BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9976
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 271 bits (692), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 142/314 (45%), Positives = 194/314 (61%), Gaps = 7/314 (2%)
Query: 21 QWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWAN 79
Q +++ ++ TVL+GS + L + S AD+P + F +P Q+ L PG P+WAN
Sbjct: 56 QGLVLPXALELXTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWAN 115
Query: 80 YVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLKLTD 139
YVKGV+ + AP+PGF+AV+ A+LEVATYTFL+ + + +
Sbjct: 116 YVKGVIQYYP--AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAA 172
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
+A CQ+AEHSFAG PCGI DQ++S+ G++G ALLIDC++ E +PL D + LI N
Sbjct: 173 RAQVCQQAEHSFAGXPCGIXDQFISLXGQKGHALLIDCRSLETSLVPLSDP-KLAVLITN 231
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259
SNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV
Sbjct: 232 SNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVV 289
Query: 260 TEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319
EI RT + A AL+ GD+ FG+L ESH SLRDDYEVSC ELD + A ++PGV G R
Sbjct: 290 GEIRRTAQAAAALRRGDYRAFGRLXVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSR 349
Query: 320 MTXXXXXXCAIALV 333
T C + L+
Sbjct: 350 XTGGGFGGCTVTLL 363
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 145/288 (50%), Gaps = 8/288 (2%)
Query: 60 ISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPV-PGFNAVIXXXXXXXXXXXXXAAL 118
I FD+ +V+K W+NYVKG++ + + GF +I A+L
Sbjct: 105 IEFDLDEVEK--KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASL 162
Query: 119 EVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCK 178
E+ L+ + + +L L Q+ E+ + GV GI+DQ+ GE A+ +DC
Sbjct: 163 ELLVGVVLDDLFNLNVPRLELVQLG-QKTENDYIGVNSGILDQFAIGFGEVKKAIELDCN 221
Query: 179 THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLH-RVSFRDVSLKS 237
T + +P+ + Y +I+N+N L+ S+Y R A+ + L ++ R+ + + S
Sbjct: 222 TLKYEMVPV-ELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELS 280
Query: 238 LEDKHAQK-LLSDEEY-KRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDY 295
E+ A L+ DE KR H V E +RT A G+ FG+L+N SH SL+DDY
Sbjct: 281 NEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDY 340
Query: 296 EVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVSPLNLRRGRK 343
EV+ ELD +A AQ GVLG RMT CAIALV+ N+ RK
Sbjct: 341 EVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRK 388
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 125/260 (48%), Gaps = 16/260 (6%)
Query: 77 WANYVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLK 136
W +YVKG+ + + V G + A+ EV L+ + + K
Sbjct: 67 WIDYVKGIFWVLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDS 126
Query: 137 LTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFL 196
L+ K L ++AE+ F GVPCGI+DQ+ V G EG+ + +D T + +IP D L
Sbjct: 127 LS-KVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVS--IL 183
Query: 197 IINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDV---SLKSLEDKHAQKLLSDEEYK 253
+ + V EL+SSEYA R+ + L L + S ++V L L H +K
Sbjct: 184 VFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLH-RKFFG----- 237
Query: 254 RGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLP 313
++V E R + +ALKEG+ E GK++ +H L +YEVSCKELD A L
Sbjct: 238 ---YIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKL- 293
Query: 314 GVLGCRMTXXXXXXCAIALV 333
G G R+T AIALV
Sbjct: 294 GAYGARLTGAGFGGSAIALV 313
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 124/257 (48%), Gaps = 10/257 (3%)
Query: 77 WANYVKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTLK 136
W +YVKGV+ + + G I A+ EV L + + +
Sbjct: 69 WIDYVKGVLWVLIQEGYKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYN-LNID 127
Query: 137 LTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFL 196
KAL ++AE+ F GVPCGI+DQ+ V G++ + + +D +T + +IP D L
Sbjct: 128 PLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNVIFLDTQTLQYEYIPFPKDVS--VL 185
Query: 197 IINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGH 256
+ + V EL+SSEYA R+ + L L + S ++V+ K L L K
Sbjct: 186 VFYTGVKRELASSEYAERKRIAEESLRILGKESSKEVTEKDLGK------LPPLHRKFFS 239
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
++V E R + +ALKEGD E GK++ +H L ++Y VSC+ELD A L G
Sbjct: 240 YIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXEL-GAY 298
Query: 317 GCRMTXXXXXXCAIALV 333
G R+T AIALV
Sbjct: 299 GARLTGAGFGGSAIALV 315
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 126/315 (40%), Gaps = 63/315 (20%)
Query: 75 PKWANY----VKGVVSIFNDRVAPVPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESIT 130
P W NY +KG+ F ++ + G N ++ +AL V +
Sbjct: 125 PLWHNYFLCGLKGIQEHFG--LSNLTGMNCLVDGNIPPSSGLSSSSAL-VCCAGLVTLTV 181
Query: 131 DEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDD 190
+ L + A C ++E + G G MDQ +S + EEG+A LI+ A + L
Sbjct: 182 LGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSG 240
Query: 191 HQYVFLIINSNVH-HELSSSEYAVRRAQCK---------------SVL------------ 222
VF+I NS V ++ ++S + +R +C+ VL
Sbjct: 241 A--VFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGIS 298
Query: 223 ---------DKLHRVSFR--------DVSLKSLEDK----HAQKLLSDEEYKRGHHVVTE 261
D LH + +SL+ L + + Q +L + Y+R HV +E
Sbjct: 299 LEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSE 358
Query: 262 IDRTYKGANALKEGD---FETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGC 318
R + +E + G+LMN+SH S RD YE SC ELD + + G G
Sbjct: 359 AARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKF-GAQGS 417
Query: 319 RMTXXXXXXCAIALV 333
R+T C +++V
Sbjct: 418 RLTGAGWGGCTVSMV 432
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 252 YKRGHHVVTEIDRTYKGANALK-------EGDFETFGKLMNESHDSLRDDYEVSCKELDD 304
Y+R HV +E R K + E F+ FG LMNES S YE SC E+D
Sbjct: 411 YQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEIDK 470
Query: 305 IAHCAQSLPGVLGCRMTXXXXXXCAIALV 333
I A S G G R+T C + LV
Sbjct: 471 ICSIALS-NGSYGSRLTGAGWGGCTVHLV 498
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 147 AEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH---EARHIPLGDDHQYVFLIINSNV- 202
AEH + GV G MDQ SV GEE AL ++ K P +H+ F+I N+ V
Sbjct: 225 AEH-YVGVNNGGMDQAASVCGEEDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVV 283
Query: 203 --HHELSSSEYAVRRAQCKS---VLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHH 257
E + + Y +R + + VL + V S +K + + Y R H+
Sbjct: 284 SNKFETAPTNYNLRVVEVTTAANVLAATYGVVLLSGKEGSSTNKGNLRDFMNVYYARYHN 343
Query: 258 VVT 260
+ T
Sbjct: 344 IST 346
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 234 SLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRD 293
+ K + D H K ++KR + T I + AL++GD + G+LMN +HD R
Sbjct: 201 TAKVVNDVHKMKQQQPVQFKRLYDNYTHI--VSQAREALQKGDLQRLGQLMNANHDLCR- 257
Query: 294 DYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVSPLNLR----RGRKKKSLDA 349
+VSC+EL+ I ++ G LG +++ A+AL + + R +G K K +A
Sbjct: 258 QIDVSCRELESIVQTCRTY-GALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEA 316
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 252 YKRGHHVVTEIDRTYKGANALKEGDFET-------FGKLMNESHDSLRDDYEVSCKELDD 304
Y+R HV +E R K + F T FG+LMNES S YE SC E +
Sbjct: 383 YQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQ 442
Query: 305 IAHCAQSLP-GVLGCRMTXXXXXXCAIALV 333
I C+ +L G G R+T C I LV
Sbjct: 443 I--CSIALANGSFGSRLTGAGWGGCTIHLV 470
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 18/207 (8%)
Query: 24 IMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKG 83
+ +DV + V + N + ++D A + D+ D + P +W+NY K
Sbjct: 65 LAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPLD-GSYMAIDPSVSEWSNYFKC 123
Query: 84 ---VVSIFNDRVAP-----VPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTL 135
V + ++AP P A I +A A K
Sbjct: 124 GLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALATIRANMGKNF 183
Query: 136 KLTDKALA--CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH---EARHIPLGDD 190
++ K L AEH + GV G MDQ SV GEE AL ++ + P +
Sbjct: 184 DISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKN 242
Query: 191 HQYVFLIINSNV---HHELSSSEYAVR 214
H+ F+I N+ V E + + Y +R
Sbjct: 243 HEISFVIANTLVKSNKFETAPTNYNLR 269
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 252 YKRGHHVVTEIDRTYKGANALKEGDFET-------FGKLMNESHDSLRDDYEVSCKELDD 304
Y+R HV +E R K + F T FG+LMNES S YE SC E +
Sbjct: 368 YQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQ 427
Query: 305 IAHCAQSLP-GVLGCRMTXXXXXXCAIALV 333
I C+ +L G G R+T C I LV
Sbjct: 428 I--CSIALANGSFGSRLTGAGWGGCTIHLV 455
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 78/207 (37%), Gaps = 18/207 (8%)
Query: 24 IMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKG 83
+ +DV + V + N + ++D A + D+ D + P +W+NY K
Sbjct: 50 LAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPLD-GSYMAIDPSVSEWSNYFKC 108
Query: 84 ---VVSIFNDRVAP-----VPGFNAVIXXXXXXXXXXXXXAALEVATYTFLESITDEKTL 135
V + ++AP P A I +A A K
Sbjct: 109 GLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALATIRANMGKNF 168
Query: 136 KLTDKALA--CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH---EARHIPLGDD 190
++ K L AEH + GV G MDQ SV GEE AL ++ + P +
Sbjct: 169 DISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKN 227
Query: 191 HQYVFLIINSNV---HHELSSSEYAVR 214
H+ F+I N+ V E + + Y +R
Sbjct: 228 HEISFVIANTLVKSNKFETAPTNYNLR 254
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 234 SLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRD 293
+ K + D H K ++KR + T I + AL++GD + G+L N +HD R
Sbjct: 201 TAKVVNDVHKXKQQQPVQFKRLYDNYTHI--VSQAREALQKGDLQRLGQLXNANHDLCR- 257
Query: 294 DYEVSCKELDDIAHCAQSLPGVLGCRMTXXXXXXCAIALVSPLNLR----RGRKKKSLDA 349
+VSC+EL+ I ++ G LG +++ A+AL + + R +G K K +A
Sbjct: 258 QIDVSCRELESIVQTCRTY-GALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPEA 316
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
H + E+ T + A+ + D E G++++++H L++ VS E D + A S G L
Sbjct: 194 HALGEL--TQQAEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGAL 249
Query: 317 GCRMTXXXXXXCAIALVSPLN 337
G +M+ C IALV+ L
Sbjct: 250 GAKMSGGGLGGCIIALVTNLT 270
>pdb|3SJ8|A Chain A, Crystal Structure Of The 3c Protease From Coxsackievirus
A16
pdb|3SJI|A Chain A, Crystal Structure Of Cva16 3c In Complex With Rupintrivir
(Ag7088)
Length = 190
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 164 SVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVL 222
++ G + L+I+ + + +P+GD QY FL ++ H + + QC V+
Sbjct: 94 TITGASDATLIINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVV 152
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
+ EID+ ALK + E FGKLM ++H+ L+ +S +LD I
Sbjct: 220 EIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLK-KLNISTPKLDRIVDIGNRFG--F 274
Query: 317 GCRMTXXXXXXCAIALV 333
G ++T C I LV
Sbjct: 275 GAKLTGAGGGGCVIILV 291
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
+ EID+ ALK + E FGKLM ++H+ L+ +S +LD I
Sbjct: 217 EIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLK-KLNISTPKLDRIVDIGNRFG--F 271
Query: 317 GCRMTXXXXXXCAIALV 333
G ++T C I LV
Sbjct: 272 GAKLTGAGGGGCVIILV 288
>pdb|3SJO|A Chain A, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|B Chain B, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|C Chain C, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|D Chain D, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|E Chain E, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|F Chain F, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|G Chain G, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|H Chain H, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
Length = 190
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 171 SALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV 228
+ L+I+ + + +P+GD QY FL ++ H + + QC V+ + +V
Sbjct: 101 ATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVVTSVGKV 158
>pdb|1QEX|A Chain A, Bacteriophage T4 Gene Product 9 (gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
pdb|1QEX|B Chain B, Bacteriophage T4 Gene Product 9 (gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector
pdb|1PDP|A Chain A, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|B Chain B, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|C Chain C, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|D Chain D, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|E Chain E, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|F Chain F, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|G Chain G, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|H Chain H, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|I Chain I, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|J Chain J, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|K Chain K, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|L Chain L, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|M Chain M, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|N Chain N, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|O Chain O, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|P Chain P, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|Q Chain Q, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1PDP|R Chain R, Fitting Of Gp9 Structure Into The Bacteriophage T4
Baseplate Cryoem Reconstruction
pdb|1S2E|A Chain A, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector,
Alternative Fit Of The First 19 Residues
pdb|1S2E|B Chain B, Bacteriophage T4 Gene Product 9 (Gp9), The Trigger Of Tail
Contraction And The Long Tail Fibers Connector,
Alternative Fit Of The First 19 Residues
pdb|1TJA|C Chain C, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1TJA|D Chain D, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1TJA|E Chain E, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1ZKU|A Chain A, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|B Chain B, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|C Chain C, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|D Chain D, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|E Chain E, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|F Chain F, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|G Chain G, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|H Chain H, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|I Chain I, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|J Chain J, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|K Chain K, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|L Chain L, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|M Chain M, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|N Chain N, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|O Chain O, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|P Chain P, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|Q Chain Q, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
pdb|1ZKU|R Chain R, Fitting Of The Gp9 Structure In The Em Density Of
Bacteriophage T4 Extended Tail
Length = 288
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 173 LLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSF 230
LL+ C++ + R I + + I+ V+ E+ SSEYAV R ++ D++ ++F
Sbjct: 202 LLVTCQSVDGRKIKTAEIN-----ILVDTVNSEVISSEYAVMRVGNETEEDEIANIAF 254
>pdb|3OSY|A Chain A, Human Enterovirus 71 3c Protease
pdb|3OSY|B Chain B, Human Enterovirus 71 3c Protease
pdb|3OSY|C Chain C, Human Enterovirus 71 3c Protease
pdb|3OSY|D Chain D, Human Enterovirus 71 3c Protease
pdb|3OSY|E Chain E, Human Enterovirus 71 3c Protease
Length = 204
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 171 SALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVL 222
+ L+I+ + + +P+GD QY FL ++ H + + QC V+
Sbjct: 121 ATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVV 172
>pdb|3QZR|A Chain A, Human Enterovirus 71 3c Protease Mutant E71a In Complex
With Rupintrivir
pdb|3QZR|B Chain B, Human Enterovirus 71 3c Protease Mutant E71a In Complex
With Rupintrivir
Length = 187
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 171 SALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVL 222
+ L+I+ + + +P+GD QY FL ++ H + + QC V+
Sbjct: 104 ATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVV 155
>pdb|3QZQ|A Chain A, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|B Chain B, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|C Chain C, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|D Chain D, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
Length = 187
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 171 SALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVL 222
+ L+I+ + + +P+GD QY FL ++ H + + QC V+
Sbjct: 104 ATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGGVV 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,518,534
Number of Sequences: 62578
Number of extensions: 364489
Number of successful extensions: 759
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 28
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)