Query psy9976
Match_columns 349
No_of_seqs 165 out of 1787
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:30:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9976.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9976hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 7.7E-76 1.7E-80 548.0 36.2 326 10-346 34-364 (390)
2 PLN02865 galactokinase 100.0 6.4E-68 1.4E-72 513.3 37.4 327 10-345 41-390 (423)
3 PTZ00290 galactokinase; Provis 100.0 2.4E-65 5.2E-70 499.8 36.8 324 10-345 48-430 (468)
4 PRK00555 galactokinase; Provis 100.0 6.1E-63 1.3E-67 474.9 37.8 326 7-345 10-336 (363)
5 PRK05101 galactokinase; Provis 100.0 9.1E-63 2E-67 477.0 36.8 325 9-345 30-356 (382)
6 PRK05322 galactokinase; Provis 100.0 1.7E-62 3.6E-67 475.6 37.0 328 7-345 27-361 (387)
7 PLN02521 galactokinase 100.0 3.8E-61 8.2E-66 475.6 33.1 327 7-345 56-459 (497)
8 TIGR00131 gal_kin galactokinas 100.0 3.2E-60 7E-65 460.9 35.3 329 7-345 25-360 (386)
9 PRK03817 galactokinase; Provis 100.0 2.5E-54 5.5E-59 414.9 34.6 316 7-344 8-323 (351)
10 TIGR00549 mevalon_kin mevalona 100.0 1.3E-44 2.9E-49 336.2 26.7 270 7-332 4-273 (273)
11 TIGR01220 Pmev_kin_Gr_pos phos 100.0 4E-43 8.7E-48 337.2 30.9 295 7-345 8-342 (358)
12 COG1577 ERG12 Mevalonate kinas 100.0 3.8E-43 8.2E-48 325.8 26.6 274 7-337 8-283 (307)
13 PLN02677 mevalonate kinase 100.0 1.9E-41 4E-46 326.0 28.4 293 6-345 9-362 (387)
14 KOG0631|consensus 100.0 1.2E-41 2.5E-46 323.4 22.0 328 10-344 50-453 (489)
15 COG2605 Predicted kinase relat 100.0 1.2E-40 2.5E-45 298.0 24.0 281 15-347 22-312 (333)
16 PRK13412 fkp bifunctional fuco 100.0 5.8E-39 1.3E-43 333.1 31.8 285 18-346 633-949 (974)
17 PRK03926 mevalonate kinase; Pr 100.0 3.9E-38 8.4E-43 296.9 31.2 271 7-345 9-279 (302)
18 PTZ00298 mevalonate kinase; Pr 100.0 1.4E-36 3E-41 289.1 27.4 282 7-345 18-306 (328)
19 KOG1511|consensus 100.0 2.5E-31 5.4E-36 243.1 23.9 287 7-339 12-350 (397)
20 TIGR01219 Pmev_kin_ERG8 phosph 100.0 4.2E-28 9E-33 236.4 30.3 310 7-343 7-427 (454)
21 PRK00128 ipk 4-diphosphocytidy 99.9 9.7E-27 2.1E-31 217.7 19.4 251 9-345 16-269 (286)
22 PLN02451 homoserine kinase 99.9 1.1E-25 2.4E-30 216.5 26.0 263 19-344 64-337 (370)
23 TIGR01920 Shik_kin_archae shik 99.9 6.8E-25 1.5E-29 202.2 27.2 229 28-344 20-250 (261)
24 PRK01212 homoserine kinase; Pr 99.9 1.7E-24 3.7E-29 204.0 25.6 252 21-345 18-276 (301)
25 PRK02534 4-diphosphocytidyl-2- 99.9 6.5E-25 1.4E-29 207.8 19.5 266 10-345 18-287 (312)
26 COG0083 ThrB Homoserine kinase 99.9 8.1E-24 1.8E-28 194.9 25.5 241 21-336 18-263 (299)
27 TIGR00154 ispE 4-diphosphocyti 99.9 1.6E-24 3.6E-29 202.9 21.4 248 11-343 13-269 (293)
28 TIGR00191 thrB homoserine kina 99.9 1.8E-23 3.9E-28 197.0 24.9 247 20-339 14-270 (302)
29 PRK03188 4-diphosphocytidyl-2- 99.9 4.5E-23 9.9E-28 194.2 19.8 207 79-345 65-273 (300)
30 PRK01123 shikimate kinase; Pro 99.9 3.6E-22 7.8E-27 186.3 25.6 236 28-345 26-263 (282)
31 PTZ00299 homoserine kinase; Pr 99.9 1.1E-21 2.4E-26 185.9 22.9 238 21-334 22-273 (336)
32 PRK14609 4-diphosphocytidyl-2- 99.9 5.6E-22 1.2E-26 183.5 18.2 244 28-341 8-259 (269)
33 PRK14608 4-diphosphocytidyl-2- 99.9 3E-22 6.5E-27 187.4 16.4 250 28-345 14-275 (290)
34 PRK14611 4-diphosphocytidyl-2- 99.9 2E-21 4.4E-26 180.6 17.8 195 77-335 60-254 (275)
35 PRK14615 4-diphosphocytidyl-2- 99.9 6.7E-21 1.5E-25 178.7 20.5 263 28-345 14-284 (296)
36 PRK14614 4-diphosphocytidyl-2- 99.9 6.8E-21 1.5E-25 177.5 18.0 198 79-344 67-265 (280)
37 PRK14616 4-diphosphocytidyl-2- 99.9 7.1E-21 1.5E-25 178.1 17.6 204 78-345 64-270 (287)
38 PRK14613 4-diphosphocytidyl-2- 99.9 1.3E-20 2.8E-25 176.8 18.7 208 78-345 74-283 (297)
39 PRK14612 4-diphosphocytidyl-2- 99.9 2.5E-20 5.4E-25 173.5 17.6 236 18-345 21-261 (276)
40 TIGR00144 beta_RFAP_syn beta-R 99.8 5E-18 1.1E-22 161.0 27.0 237 28-336 30-290 (324)
41 PRK00343 ipk 4-diphosphocytidy 99.8 2.3E-19 5E-24 166.2 17.4 191 76-343 66-257 (271)
42 PRK14610 4-diphosphocytidyl-2- 99.8 4E-18 8.7E-23 159.0 18.0 201 78-345 65-267 (283)
43 PRK00650 4-diphosphocytidyl-2- 99.8 8.8E-18 1.9E-22 155.6 17.8 163 28-207 8-174 (288)
44 COG1947 IspE 4-diphosphocytidy 99.8 5.7E-17 1.2E-21 148.8 18.5 251 25-342 9-266 (289)
45 PRK05905 hypothetical protein; 99.7 1.2E-15 2.7E-20 139.4 16.6 163 28-211 8-182 (258)
46 PF00288 GHMP_kinases_N: GHMP 99.7 4.7E-16 1E-20 113.4 8.9 67 99-168 1-67 (67)
47 TIGR01240 mevDPdecarb diphosph 99.7 1.3E-13 2.8E-18 129.6 26.7 218 78-345 66-300 (305)
48 PRK04181 4-diphosphocytidyl-2- 99.6 4.8E-15 1E-19 136.0 12.1 164 28-211 8-183 (257)
49 COG1685 Archaeal shikimate kin 99.6 4.8E-13 1E-17 119.8 22.9 197 79-336 52-250 (278)
50 COG1907 Predicted archaeal sug 99.5 6.1E-13 1.3E-17 120.3 19.3 197 96-341 70-281 (312)
51 COG4542 PduX Protein involved 99.5 6.7E-13 1.4E-17 117.5 17.1 192 95-345 81-273 (293)
52 PF08544 GHMP_kinases_C: GHMP 99.4 1.6E-13 3.5E-18 104.5 5.4 77 268-345 1-79 (85)
53 COG3890 ERG8 Phosphomevalonate 99.4 2.9E-10 6.4E-15 102.0 22.8 178 7-207 11-207 (337)
54 PLN02407 diphosphomevalonate d 99.3 1.1E-09 2.5E-14 103.0 22.8 198 98-343 104-325 (343)
55 COG3407 MVD1 Mevalonate pyroph 99.3 3E-09 6.5E-14 99.4 25.2 219 78-345 71-304 (329)
56 KOG4644|consensus 99.3 3.3E-10 7.1E-15 109.1 17.7 210 95-337 689-910 (948)
57 COG1829 Predicted archaeal kin 99.0 1.8E-07 4E-12 84.6 23.2 200 80-346 62-266 (283)
58 KOG4519|consensus 98.8 1.9E-06 4.1E-11 79.6 21.9 68 109-179 152-231 (459)
59 KOG1537|consensus 98.8 4.5E-08 9.8E-13 87.5 11.0 201 97-343 94-325 (355)
60 KOG2833|consensus 98.6 7.3E-06 1.6E-10 75.3 19.5 141 98-285 106-256 (395)
61 PF10509 GalKase_gal_bdg: Gala 97.3 0.00015 3.3E-09 49.6 2.2 29 10-40 24-52 (52)
62 PF03460 NIR_SIR_ferr: Nitrite 47.1 21 0.00046 25.2 2.8 46 297-345 21-66 (69)
63 PF09440 eIF3_N: eIF3 subunit 39.9 2.1E+02 0.0045 23.5 7.9 63 246-310 62-131 (133)
64 COG1938 Archaeal enzymes of AT 39.1 2.9E+02 0.0062 25.3 9.3 29 122-151 192-220 (244)
65 TIGR00162 conserved hypothetic 34.5 1.7E+02 0.0036 25.6 6.9 34 116-150 127-160 (188)
66 PRK11199 tyrA bifunctional cho 26.2 2.7E+02 0.0059 27.0 7.6 47 265-311 324-370 (374)
67 PF07830 PP2C_C: Protein serin 25.5 64 0.0014 24.2 2.3 19 105-123 61-79 (81)
68 PRK00411 cdc6 cell division co 25.1 6.1E+02 0.013 24.2 11.0 54 277-332 315-371 (394)
69 cd01434 EFG_mtEFG1_IV EFG_mtEF 24.8 3.1E+02 0.0068 21.3 6.5 48 82-130 62-112 (116)
70 COG2221 DsrA Dissimilatory sul 24.5 63 0.0014 30.6 2.6 49 295-346 40-88 (317)
71 PF12208 DUF3601: Domain of un 23.3 12 0.00025 27.8 -1.9 26 7-33 29-54 (78)
72 PF11815 DUF3336: Domain of un 22.0 1.9E+02 0.0042 24.0 4.9 37 264-302 62-98 (145)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-76 Score=548.01 Aligned_cols=326 Identities=37% Similarity=0.571 Sum_probs=299.4
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCC-CCcCHhHHHHHHHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTP-GAPKWANYVKGVVSIF 88 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~-~~~~w~~~v~~~~~~l 88 (349)
|.|| |+|+|||+|||| |||..|++.+++++|.+++++|.++. .....+.++. ++.+ ..+.|+||+++++..+
T Consensus 34 LIGE-HtDYn~G~VlP~-Ain~~t~v~v~~r~d~~v~l~s~n~~---~~~~~~~~~~--d~~~~~~~~W~nYvkgvi~~l 106 (390)
T COG0153 34 LIGE-HTDYNGGFVLPC-AINYGTYVAVAKRDDGKVRLYSANFG---NAGDIFFLLL--DIAKEKIDDWANYVKGVIKAL 106 (390)
T ss_pred eecc-ceeccCceEEEE-EeecceEEEEEEccCceEEEEeCCCc---cccceeecch--hhcccccchhhhhHHHHHHHH
Confidence 3455 789999999999 99999999999999999999999873 2233344432 2322 3478999999999999
Q ss_pred HhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhcc
Q psy9976 89 NDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168 (349)
Q Consensus 89 ~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg 168 (349)
++.|+.++|+++.|.||||.|+|||||||++||++.++.++++.++ ++.+++++|+.+|+.|+|.|||+|||+++.||+
T Consensus 107 ~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~-~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~ 185 (390)
T COG0153 107 QKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPL-DKAELAKIAQVAENQFVGVNCGIMDQLASAFGK 185 (390)
T ss_pred HhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhhccCCcCchHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhch--hccCCCCHHHHHHHHhccc
Q psy9976 169 EGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHR--VSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 169 ~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~--~~l~~~~~~~~~~~~~~~~ 246 (349)
+|+++++||++++++++|+|. .++.++|+||++++.++.++||.||+||++|++.|++ +.|++++.+.+.+. ...
T Consensus 186 ~~~al~ld~~~l~~~~~~~p~-~~~~ivI~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~--~~~ 262 (390)
T COG0153 186 KDHALLLDCRTLEYEPVPFPV-GGVSIVIVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAAL--QAE 262 (390)
T ss_pred CCcEEEEEcccCceEEeccCc-cceEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhh--hhh
Confidence 999999999999999999997 4599999999999999999999999999999999999 99999999998876 333
Q ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 247 L--SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 247 l--~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
+ ++..++|+.|+++|++||.++++||+++|+.+||+||++||.+||++|++||||+|+|+++|....|++|+||||||
T Consensus 263 i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTGaG 342 (390)
T COG0153 263 IEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAG 342 (390)
T ss_pred cccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecCCC
Confidence 4 46788999999999999999999999999999999999999999999999999999999999875788999999999
Q ss_pred ccceeEEEeCCCchhhhhhhcc
Q psy9976 325 FGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 325 ~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
||||+|+|++.+.+++|+++++
T Consensus 343 fGGc~IaLv~~~~v~~~~e~v~ 364 (390)
T COG0153 343 FGGCVIALVPNDDVEAVAEAVA 364 (390)
T ss_pred CCceEEEEechhhHHHHHHHHH
Confidence 9999999999999999888764
No 2
>PLN02865 galactokinase
Probab=100.00 E-value=6.4e-68 Score=513.27 Aligned_cols=327 Identities=25% Similarity=0.370 Sum_probs=292.3
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc-c------CCCCCcCHhHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ-K------LTPGAPKWANYVK 82 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~-~------l~~~~~~w~~~v~ 82 (349)
|.|| |+|++||+|||| |||++++++++|++|++|+|.|.++ +...+|+++..+ + .....++|+||++
T Consensus 41 lIGE-HtDYngG~VLp~-AI~~~~~va~~~~~~~~i~v~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~Yv~ 114 (423)
T PLN02865 41 PLGA-HIDHQGGTVSAM-TINKGILLGFVPSGDPEVLLRSAQF----EGEVRFRVDEIQHPIANVSSDSKEESNWGDYAR 114 (423)
T ss_pred cccc-cccCCCCeEEeE-EeeccEEEEEEECCCCEEEEEECCC----CCceEEeccccccccccccccCCCCCCHHHHHH
Confidence 4555 799999999999 9999999999999999999999876 233566654210 0 1123467999999
Q ss_pred HHHHHHHhcCCCC-CceEEEEEeCC-CCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhH
Q psy9976 83 GVVSIFNDRVAPV-PGFNAVILSSV-PMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMD 160 (349)
Q Consensus 83 ~~~~~l~~~~~~~-~g~~i~i~s~i-P~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D 160 (349)
+++..+.+.+... +||++.|++++ |+|+|||||||++||++.++..+++.++ ++++++++|+++|+.++|.|||+||
T Consensus 115 gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~-~~~~la~~a~~~E~~~~G~~~G~mD 193 (423)
T PLN02865 115 GAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTV-SPEDNIELDRLIENEYLGLRNGILD 193 (423)
T ss_pred HHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCcccc
Confidence 9999998888766 69999999999 5799999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhccCCeEEEEecCCCeeEEeeCCCC-----CCeEEEEEeCCCCcccC-hhhHHHHHHHHHHHHHHhc--------
Q psy9976 161 QYVSVMGEEGSALLIDCKTHEARHIPLGDD-----HQYVFLIINSNVHHELS-SSEYAVRRAQCKSVLDKLH-------- 226 (349)
Q Consensus 161 ~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~-----~~~~~ll~~s~~~~~~~-~~~y~~r~~~~~~a~~~l~-------- 226 (349)
|+++++|..|+++++||+++.++++|+|.+ .++.|++++|+++|..+ +..||.||.||+.|+++|+
T Consensus 194 Q~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~ 273 (423)
T PLN02865 194 QSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFLLEASGNDEL 273 (423)
T ss_pred HHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999999988888887631 26889999999999977 7899999999999999996
Q ss_pred hhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHH
Q psy9976 227 RVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIA 306 (349)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~ 306 (349)
..+||+++.+++.+. +..+++..++|+.|+++|+.||.+++++|+++|++.||++|++||.++|++|++||||+|.|+
T Consensus 274 ~~~Lr~~~~~~~~~~--~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv 351 (423)
T PLN02865 274 EPLLCNVEPEVYEAH--KCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLY 351 (423)
T ss_pred hhhhhcCCHHHHHHH--HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHH
Confidence 467899998888765 555788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 307 HCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 307 ~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+.+++.+|++|+||||||||||+++|++.+.+++|+++.
T Consensus 352 ~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v 390 (423)
T PLN02865 352 EILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFV 390 (423)
T ss_pred HHHHhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHH
Confidence 999985699999999999999999999999999887764
No 3
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=2.4e-65 Score=499.77 Aligned_cols=324 Identities=24% Similarity=0.414 Sum_probs=270.1
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEec---CCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRN---NSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~---~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+|| |+|++||+|||| |||++++++++++ +++++++.+... . .|+++.. ......+.|+||++++++
T Consensus 48 LIGE-HtDYngG~VLp~-AId~~~~va~~~~~~~~~~~i~~~~~~~-----~--~~~~~~~-~~~~~~~~W~nYv~gv~~ 117 (468)
T PTZ00290 48 FIGE-HVDYMGGYVCPA-AVLEGCHILVGRVKHFCDHKLRFATETD-----E--HFVLDHL-GGAKHNKAWTTFVRGAAT 117 (468)
T ss_pred eccc-ccccCCCeeeec-cccCcEEEEEeecCCCCCCeEEEEECCC-----c--eeecCcc-cccCCcccHHHHHHHHHH
Confidence 3454 789999999999 9999999998765 678899955441 1 3444321 111234679999999998
Q ss_pred H-HHhcCCC-----CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCC-----------------CC--CCHHHHH
Q psy9976 87 I-FNDRVAP-----VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDE-----------------KT--LKLTDKA 141 (349)
Q Consensus 87 ~-l~~~~~~-----~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~-----------------~~--~~~~~l~ 141 (349)
. +++.+.. ++||++.|.|+||+|+|||||||++||++.|++.+++. .+ .+..+++
T Consensus 118 ~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA 197 (468)
T PTZ00290 118 LRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELA 197 (468)
T ss_pred HHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHH
Confidence 6 6556663 47999999999999999999999999999999998632 12 1458999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCC--CCCeEEEEEeCCCCcccChh---hHHHHHH
Q psy9976 142 LACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGD--DHQYVFLIINSNVHHELSSS---EYAVRRA 216 (349)
Q Consensus 142 ~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~--~~~~~~ll~~s~~~~~~~~~---~y~~r~~ 216 (349)
++|+++|++|+|.|||+|||+++++|++|+++++||++++++++|++. .+++.|+|+||+++|++.++ +||.||.
T Consensus 198 ~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ 277 (468)
T PTZ00290 198 KQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRS 277 (468)
T ss_pred HHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHH
Confidence 999999999999999999999999999999999999999999998753 14799999999999997655 9999999
Q ss_pred HHHHHHHHhchhccCCCC------------------HHHHH-HHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHh----
Q psy9976 217 QCKSVLDKLHRVSFRDVS------------------LKSLE-DKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALK---- 273 (349)
Q Consensus 217 ~~~~a~~~l~~~~l~~~~------------------~~~~~-~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~---- 273 (349)
||+.|++.|++..+++++ ..++. .. +..+++..++|++|+++|++||.+++++|+
T Consensus 278 ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~ 355 (468)
T PTZ00290 278 DQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESC--KPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELP 355 (468)
T ss_pred HHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHh--hhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Confidence 999999999875554331 12231 22 355688899999999999999999999995
Q ss_pred ---cCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 274 ---EGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 274 ---~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
++|+..||++|++||.+||++|++|||+||.|++.+.+..|++||||||||||||+|+|++++.++++++++
T Consensus 356 l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v 430 (468)
T PTZ00290 356 LSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHV 430 (468)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHH
Confidence 567999999999999999999999999999999986543699999999999999999999999988887764
No 4
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=6.1e-63 Score=474.91 Aligned_cols=326 Identities=33% Similarity=0.505 Sum_probs=290.8
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+-|+|| |+|+++|+|||+ |||+++++.++|++|+++++.|.+++ ....++++. .......|.+|+++++.
T Consensus 10 Rv~LiGE-H~dy~~g~vl~~-Ai~~~~~v~~~~~~~~~i~i~s~~~~----~~~~~~~~~---~~~~~~~w~~y~~gv~~ 80 (363)
T PRK00555 10 RINLIGE-HTDYNLGFALPI-ALPQRTVVTFTPEHTDAITASSDRAD----GSARIPLDT---TPGQVTGWAAYAAGVIW 80 (363)
T ss_pred eEEeecc-cccCCCCeEEeE-EeeccEEEEEEECCCCEEEEEECCCC----CceEEecCC---CCCCCcchHHHHHHHHH
Confidence 4557788 678889999999 99999999999999999999998752 234444431 12234679999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+++.+..+.|+++.|.|+||+|+|||||||++||++.|+..+++.++ ++++++++|+++|+.++|.|||+|||++++|
T Consensus 81 ~l~~~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~-~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~ 159 (363)
T PRK00555 81 ALRGAGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRI-DRLEQARLAQRAENEYVGAPTGLLDQLAALF 159 (363)
T ss_pred HHHHcCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhCCCCCChhHHHHHHh
Confidence 998888777899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCC-CCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDD-HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~-~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
||.|+++++||++..++++|++.. +++.|++++|++++.+++.+||.||.+|+.+.+.++.+.+|++..+.+... ..
T Consensus 160 G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~~~~~lr~~~~~~~~~~--~~ 237 (363)
T PRK00555 160 GAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVSSLRAVQDRGLAAL--GA 237 (363)
T ss_pred CCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCcccccchhhHHHHHHHHHHHHHhCccchhcCCHHHHHHH--Hh
Confidence 999999999998888888887642 346799999999999999999999999999999998888998887766655 33
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCc
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGF 325 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~ 325 (349)
..++..++|+.|+++|++|+.+++++|+++|++.||++|+++|.++|+.+++|+|++|.|++.+++ .|++|+|+|||||
T Consensus 238 ~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~-~Ga~GaklsGaG~ 316 (363)
T PRK00555 238 IADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSAVR-AGALGARMTGGGF 316 (363)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHh-cCCeEEEECCCCc
Confidence 346678899999999999999999999999999999999999999998899999999999999999 7999999999999
Q ss_pred cceeEEEeCCCchhhhhhhc
Q psy9976 326 GGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 326 GG~~i~l~~~~~~~~~~~~~ 345 (349)
|||+++|++.+.++++.+.+
T Consensus 317 Gg~vial~~~~~~~~~~~~l 336 (363)
T PRK00555 317 GGCVIALVPADRAEDVADTV 336 (363)
T ss_pred cCeEEEEEchhHHHHHHHHH
Confidence 99999999998887776653
No 5
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=9.1e-63 Score=476.98 Aligned_cols=325 Identities=35% Similarity=0.554 Sum_probs=291.7
Q ss_pred hhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC-CCCCcCHhHHHHHHHHH
Q psy9976 9 YLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL-TPGAPKWANYVKGVVSI 87 (349)
Q Consensus 9 ~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l-~~~~~~w~~~v~~~~~~ 87 (349)
-|+||. .|++||.|||+ |||+++++.+++++++.+++.+.++. .....|+++. ++ ......|.||+++++..
T Consensus 30 nL~GeH-~Dy~gg~vL~~-AId~~~~v~i~~~~~~~i~v~s~~~~---~~~~~~~~~~--~~~~~~~~~w~~yv~~~~~~ 102 (382)
T PRK05101 30 NLIGEH-TDYNDGFVLPC-AIDYQTVISCAKRDDRIVRVIAADYD---NQQDEFSLDA--PIVPHPEQQWANYVRGVVKH 102 (382)
T ss_pred EEeccc-eeecCCEEEEE-EecccEEEEEEECCCCEEEEEECCCC---CCceEEecCc--ccccCCCCchHHHHHHHHHH
Confidence 356775 45999999999 99999999999999999999998752 1233455543 12 22356899999999999
Q ss_pred HHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy9976 88 FNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167 (349)
Q Consensus 88 l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g 167 (349)
+.+.+....||++.|.|+||+|+|||||||++||++.|++.+++.++ ++++++++|+++|+.++|.|||+|||+++++|
T Consensus 103 l~~~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l-~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G 181 (382)
T PRK05101 103 LQERNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPL-SGAEIALNGQEAENQFVGCNCGIMDQLISALG 181 (382)
T ss_pred HHHhCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHHcC
Confidence 98776666799999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 168 EEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 168 g~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
+.++++++|+++.+++++|+| +++.|+|++|++++++.+..||.||+||+.|.+.++.+.+++++.+++... +..+
T Consensus 182 ~~~~~~~~d~~~~~~~~~~~~--~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~l~~~~l~~~~~~~~~~~--~~~l 257 (382)
T PRK05101 182 KKDHALLIDCRSLETKAVPMP--EGVAVVIINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAV--AAEL 257 (382)
T ss_pred CCCeEEEEEcCCCceEEeeCC--CCcEEEEEeCCCCccccccchhHHHHHHHHHHHHhChHhhhcCCHHHHHHH--HhhC
Confidence 999999999999888898887 488999999999999888999999999999999999999999988877665 4567
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC-eEEEecccCcc
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV-LGCRMTGGGFG 326 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga-~gakltGaG~G 326 (349)
++..++|+.|+++|++||.++++||+++|+..||++|+++|.+||+.|++|||++|.|++.|++..|+ +||||||||||
T Consensus 258 ~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGakltGaG~G 337 (382)
T PRK05101 258 DPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFG 337 (382)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEeccCCCc
Confidence 88999999999999999999999999999999999999999999988999999999999999994497 58899999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++++..
T Consensus 338 G~~ial~~~~~~~~~~~~~ 356 (382)
T PRK05101 338 GCIVALVPEELVEAVRQAV 356 (382)
T ss_pred cEEEEEEcHHHHHHHHHHH
Confidence 9999999999998887654
No 6
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=1.7e-62 Score=475.59 Aligned_cols=328 Identities=36% Similarity=0.577 Sum_probs=290.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCC-CCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLT-PGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~-~~~~~w~~~v~~~~ 85 (349)
|+-|+|| |.|++||+|||+ |||+++++++++++|+++++.|.++.. .....|++++ +. .....|.+|+++++
T Consensus 27 Rv~L~GE-H~d~~g~~vl~~-AI~~~~~v~~~~~~~~~i~i~s~~~~~--~~~~~~~~~~---~~~~~~~~w~~y~~gvi 99 (387)
T PRK05322 27 RINLIGE-HTDYNGGHVFPA-AITLGTYGAARKRDDKKVRLYSANFED--LGIIEFDLDD---LSFDKEDDWANYPKGVL 99 (387)
T ss_pred eeEeccc-ceeecCceeeee-eccceEEEEEEECCCCEEEEEECCCCC--CceEEEeccc---cCCCCccchHHHHHHHH
Confidence 4556777 567799999999 999999999999999999999987521 1134455442 22 23467999999999
Q ss_pred HHHHhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 86 SIFNDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 86 ~~l~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
..+.+.+..+ .||++.|.|+||+|+|||||||++||++.|++++++.++ ++++++++|+.+|+.++|.|||+|||+++
T Consensus 100 ~~l~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l-~~~~la~~a~~~E~~~~G~~sG~mDq~as 178 (387)
T PRK05322 100 KFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDL-DRLELVKLGQKTENEFIGVNSGIMDQFAI 178 (387)
T ss_pred HHHHHcCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhccCCCCcchHHHHHH
Confidence 9998777644 799999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhch----hccCCCCHHHHHH
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHR----VSFRDVSLKSLED 240 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~----~~l~~~~~~~~~~ 240 (349)
++||.++++++||++++++.+|++. +++.|+|++|++++++.+..||.||.||+++++.+++ ..+++++.+++..
T Consensus 179 ~~G~~~~~~~~d~~~~~~~~~~~~~-~~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~~~~~~~~l~~~~~~~~~~ 257 (387)
T PRK05322 179 GMGKKDHAILLDCNTLEYEYVPLDL-GDYVIVIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEFDE 257 (387)
T ss_pred HhccCCeEEEEecCCCceEEeccCC-CCeEEEEEECCCccccCcchhhHHHHHHHHHHHHHhhhcCccchhcCCHHHHHH
Confidence 9999999999999998888988875 5788999999999999999999999999999999864 5688888887776
Q ss_pred HHhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEE
Q psy9976 241 KHAQKLL-SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319 (349)
Q Consensus 241 ~~~~~~l-~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gak 319 (349)
+ +..+ ++..++|+.|++.|+.|+..++.||+++|++.||++|+++|.+|++.|++|+|++|.|++.+++.+|++|+|
T Consensus 258 ~--~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~gar 335 (387)
T PRK05322 258 Y--SYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGAR 335 (387)
T ss_pred H--HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEE
Confidence 5 4445 378889999999999999999999999999999999999999999999999999999999997436999999
Q ss_pred ecccCccceeEEEeCCCchhhhhhhc
Q psy9976 320 MTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 320 ltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|||||+|||+++|++.+..+++.+++
T Consensus 336 lsGaG~GG~vial~~~~~~~~~~~~l 361 (387)
T PRK05322 336 MTGAGFGGCAIAIVKKDKVEAFKENV 361 (387)
T ss_pred EecCCCceEEEEEEcHHHHHHHHHHH
Confidence 99999999999999999888776553
No 7
>PLN02521 galactokinase
Probab=100.00 E-value=3.8e-61 Score=475.65 Aligned_cols=327 Identities=28% Similarity=0.385 Sum_probs=276.0
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCC-CeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHH----
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNS-NQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYV---- 81 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d-~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v---- 81 (349)
|+.|+|| |+|++||+|||+ |||++++++++++++ +.+++.+.+.. .....|+++...........|.||+
T Consensus 56 RVnLiGE-HtDy~gg~vLp~-AI~~~~~v~~~~~~~~~~i~i~s~~~~---~~~~~~~~~~~~~~~~~~~~W~nYv~~~~ 130 (497)
T PLN02521 56 RVNLIGE-HIDYEGYSVLPM-AIRQDTIVAIRRAEGSKKLRIANVNDK---YTTCTFPADPDQEVDLANHKWGNYFICGY 130 (497)
T ss_pred eEEEecc-ceeecCCeEEEE-EEcCcEEEEEEEcCCCCEEEEEECCCC---CCceeeecCcccccccccccHHHHHHHHH
Confidence 4557787 789999999999 999999999999987 88999987642 1233444432111112345799999
Q ss_pred HHHHHHHHhcCCC---CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 82 KGVVSIFNDRVAP---VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 82 ~~~~~~l~~~~~~---~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
++++..+.+.+.. ..||++.|.|+||+|+|||||||++||++.++.++++.++ ++++++++|+++|+ +.|.+||+
T Consensus 131 ~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l-~~~~la~la~~~E~-~~g~~~g~ 208 (497)
T PLN02521 131 KGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNF-TKKEVAQFTCKCER-HIGTQSGG 208 (497)
T ss_pred HHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhC-ccCCCCCh
Confidence 8999988876653 3499999999999999999999999999999999999999 99999999999999 68999999
Q ss_pred hHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcc---cChhhHHHHHHHHHHHHHHhc---------
Q psy9976 159 MDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHE---LSSSEYAVRRAQCKSVLDKLH--------- 226 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~---~~~~~y~~r~~~~~~a~~~l~--------- 226 (349)
|||+++++|++|+++++||+++.++++|+|. ++.|+|++|++++. +.++.||.||.||+.|+++|+
T Consensus 209 mDq~as~~g~~g~al~~d~~~l~~~~v~~p~--~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~ 286 (497)
T PLN02521 209 MDQAISIMAQQGVAKLIDFNPVRATDVQLPA--GGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEE 286 (497)
T ss_pred HHHHHHHhcCCCcEEEEecCCCceEEeecCC--CcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchh
Confidence 9999999999999999999999999999874 88999999996655 777899999999999999996
Q ss_pred ----hhccCCCC-----------------------------HHHHHHHHhcc-cC------------------CHHHHHH
Q psy9976 227 ----RVSFRDVS-----------------------------LKSLEDKHAQK-LL------------------SDEEYKR 254 (349)
Q Consensus 227 ----~~~l~~~~-----------------------------~~~~~~~~~~~-~l------------------~~~~~~r 254 (349)
..+||++. .+++.+. +. .+ ...+++|
T Consensus 287 ~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R 364 (497)
T PLN02521 287 AISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEI--LGESLTSIFKNSPTSLAVLKAAKHFKLHQR 364 (497)
T ss_pred cccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHH--hCCcHHHHhhccccccccccccchhHHhhh
Confidence 33455541 1233222 11 01 1367899
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcccee
Q psy9976 255 GHHVVTEIDRTYKGANALKEG-----DFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCA 329 (349)
Q Consensus 255 ~~~~i~e~~rv~~~~~al~~~-----d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~ 329 (349)
+.|+++|+.||.+++++|+++ ++..||++|++||.++|++|++|||++|.|++.+++ .|++|+||||||||||+
T Consensus 365 a~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGaG~GG~~ 443 (497)
T PLN02521 365 AVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLTGAGWGGCA 443 (497)
T ss_pred hhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEECCCCCCeEE
Confidence 999999999999999999886 399999999999999999999999999999999999 69999999999999999
Q ss_pred EEEeCCCchhhhhhhc
Q psy9976 330 IALVSPLNLRRGRKKK 345 (349)
Q Consensus 330 i~l~~~~~~~~~~~~~ 345 (349)
++|++++.++++++++
T Consensus 444 i~lv~~~~~~~~~~~l 459 (497)
T PLN02521 444 VALVKEAIVPQFILAL 459 (497)
T ss_pred EEEECHHHHHHHHHHH
Confidence 9999999888877664
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=3.2e-60 Score=460.92 Aligned_cols=329 Identities=33% Similarity=0.496 Sum_probs=286.1
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCC-CCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTP-GAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~-~~~~w~~~v~~~~ 85 (349)
|+-++||. .|++||.||++ |||+++++.+++++++++++.+.+++ ....+++++. +..+ ....|.+|+++++
T Consensus 25 rv~L~GeH-~dy~g~~vl~~-AI~~~~~v~~~~~~~~~i~i~~~~~~---~~~~~~~~~~--~~~~~~~~~w~~y~~~~~ 97 (386)
T TIGR00131 25 RVNLIGEH-TDYNDGSVLPC-AIDFGTLCAVAVRDDKNVRIYLANAD---NKFAERSLDL--PLDGSEVSDWANYFKGVL 97 (386)
T ss_pred ceEeeccc-eeeCCceEEee-EeeccEEEEEEECCCCeEEEEECCCC---CcceEEECCC--CCCCCCCCCcHhHHHHHH
Confidence 44567885 55899999999 99999999999999999999998752 1123344331 1222 2468999999999
Q ss_pred HHHHhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 86 SIFNDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 86 ~~l~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
..+.+.+... .||++.|.|+||+|+|||||||++||++.|++.+++.++ ++++++++++.+|+.++|.|||+|||+++
T Consensus 98 ~~~~~~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~-~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s 176 (386)
T TIGR00131 98 HVAQERFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPL-DSKQILLRIQVAENHFVGVNCGIMDQAAS 176 (386)
T ss_pred HHHHHhcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCccCCCcchHHHHHH
Confidence 9988766543 599999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchh---ccCCCCHHHHHHH
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV---SFRDVSLKSLEDK 241 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~---~l~~~~~~~~~~~ 241 (349)
++||.|+++++||++.+++++|+|. .++.|+|++|+++++|.+..||.||.||+.|++.++.+ .+|++.++++...
T Consensus 177 ~~G~~~~~l~~~~~~~~~~~~~~~~-~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~~~~~~~lr~~~~~~~~~~ 255 (386)
T TIGR00131 177 VLGKEDHALLVECRSLKATPFKFPQ-LGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAATDKGALRDFMNEYFARY 255 (386)
T ss_pred HhccCCcEEEEEcCCCceeeecCCC-CCeEEEEEeCCCccccccchhHHHHHHHHHHHHHhccccccchhhCCHHHHhhh
Confidence 9999999999999988888888763 37899999999999998899999999999999999876 8888887776531
Q ss_pred Hh-cccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHH-HcCCCCeEEE
Q psy9976 242 HA-QKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCA-QSLPGVLGCR 319 (349)
Q Consensus 242 ~~-~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a-~~~~Ga~gak 319 (349)
.. ...+.+...+|+.|+++|+.||.+++++|+++|++.||++|+++|.+|++.|++|||++|.+++.+ ++ +||+|||
T Consensus 256 ~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~-~GAlGak 334 (386)
T TIGR00131 256 IARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELVCSAALV-NGSGGSR 334 (386)
T ss_pred HhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhc-CCCcEEE
Confidence 00 234566778899999999999999999999999999999999999999998999999999999886 55 7999999
Q ss_pred ecccCccceeEEEeCCCchhhhhhhc
Q psy9976 320 MTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 320 ltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|||||||||+++|++++.++++++.+
T Consensus 335 ltGaG~GG~vial~~~~~~~~v~~~~ 360 (386)
T TIGR00131 335 MTGAGFGGCTVHLVPNENVDKVRQAV 360 (386)
T ss_pred EecCCCceEEEEEEcHHHHHHHHHHH
Confidence 99999999999999999888887764
No 9
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=2.5e-54 Score=414.88 Aligned_cols=316 Identities=36% Similarity=0.565 Sum_probs=281.7
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++||+.. +++|+||++ |||+++++.++++ +.+++.+.+++ ....|++++ + ....+|.+|+++++.
T Consensus 8 rv~L~Geh~d-~~~g~~l~~-aI~~~~~v~~~~~--~~~~i~~~~~~----~~~~~~~~~---~-~~~~~~~~~~~~~~~ 75 (351)
T PRK03817 8 RVNLIGEHTD-YNDGYVLPF-AINLYTFLEIEKS--EKFIFYSENFN----EEKTFELDK---L-EKLNSWADYIKGVIW 75 (351)
T ss_pred eEEEecccee-eCCCeEEEE-EecCcEEEEEEeC--CeEEEEECCCC----CcEEEeCCc---c-CCCCchHHHHHHHHH
Confidence 6788999865 799999999 9999999998775 56888888752 235566542 2 234689999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+....||++.|.|+||+++|||||||++||++.+++++++.++ ++++++++|.++|+.++|.|+|+|||+++++
T Consensus 76 ~~~~~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~-~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~ 154 (351)
T PRK03817 76 VLEKRGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNL-SKLELALLAREAENEFVGVPCGIMDQFAVAF 154 (351)
T ss_pred HHHHcCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhcccccCCCCcCchhhheee
Confidence 998777767899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|+.++++++|+.+..+.++|+|. ++++++++|+.++.+.+..||+||.+|+++++.++..++++++.+++..
T Consensus 155 g~~~~~~~~~~~~~~~~~~~~~~--~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------ 226 (351)
T PRK03817 155 GKKDHAIFLDTMTLEYEYVPFPE--DYEILVFDTGVKRELASSEYNERRQECEEALKILGKKSSKEVTEEDLSK------ 226 (351)
T ss_pred ccCCEEEEEecCCCceEEEecCC--CcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccchhcCCHHHHHh------
Confidence 99888999999887788888874 8999999999988887789999999999999999988888877665432
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+++..++|+.|++.|++|+.+++.+|+++|++.||++|+++|.++++.|++++|++|.|++.+++ .|++|+|+||||||
T Consensus 227 l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGaG~G 305 (351)
T PRK03817 227 LPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGAGFG 305 (351)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 47778899999999999999999999999999999999999999998899999999999999999 69999999999999
Q ss_pred ceeEEEeCCCchhhhhhh
Q psy9976 327 GCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~ 344 (349)
||+++|++++.++++++.
T Consensus 306 g~vlal~~~~~~~~~~~~ 323 (351)
T PRK03817 306 GSAIALVDKGKFESIGEE 323 (351)
T ss_pred eEEEEEEchHHHHHHHHH
Confidence 999999999887776554
No 10
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=1.3e-44 Score=336.16 Aligned_cols=270 Identities=25% Similarity=0.328 Sum_probs=211.6
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||.+.+ ||+||++ |||+++++.+++++++ +++.+..+.. . .. ........|.+|+++++.
T Consensus 4 kv~L~GEH~v~~-g~~al~~-aI~~~~~~~~~~~~~~-~~i~~~~~~~----~----~~---~~~~~~~~~~~~v~~~l~ 69 (273)
T TIGR00549 4 KIILFGEHAVVY-GEPAIAA-PIPLRTTVTVIESSDG-SFIESDLGRG----S----LD---DAPQELDGLVSYIAEALS 69 (273)
T ss_pred eEEEEecChhcc-CCCeeEE-EecccEEEEEEEcCCC-ceEeccccCC----c----Hh---HhhHHHHHHHHHHHHHHH
Confidence 789999998876 9999999 9999999999888776 6777665410 0 01 011123579999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+ ..++++.+.|+||+|+|||||||++||++.|++++++.++ ++++++++|+.+|+.++|.|||. ||++++|
T Consensus 70 ~~~~~~--~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~-~~~~l~~~a~~~E~~~~G~~sG~-D~~~~~~ 145 (273)
T TIGR00549 70 YFSELN--PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSEL-SKEELAKLANEAEKIAHGKPSGI-DTATSTY 145 (273)
T ss_pred HhhccC--CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCCchH-hHHHHhc
Confidence 887432 2359999999999999999999999999999999999999 99999999999999999999997 9999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|| +++++.... ...++.+ +++.+++++|+.+++|.. .+ +.+.. .++.
T Consensus 146 Gg---~~~~~~~~~-~~~~~~~--~~~~lvl~~tg~~~~T~~-~~-----------~~v~~--~~~~------------- 192 (273)
T TIGR00549 146 GG---PVYFEKGEG-EFTKLIS--LDGYFVIADTGVSGSTKE-AV-----------ARVRQ--LLER------------- 192 (273)
T ss_pred CC---eEEEEcCCC-ceeeccC--CCeEEEEEECCCCCcHHH-HH-----------HHHHH--HHHh-------------
Confidence 98 677775543 2333333 368899999999987642 11 11110 0000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
.++..++....+.+ ++.+++++|+++|++.||++|+++|..+++ +++++|++|+|++.+++ .|++|+||||||+|
T Consensus 193 -~~~~~~~~~~~~~~--~~~~~~~al~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~G 267 (273)
T TIGR00549 193 -FPELIDSIMDAIGE--LTLEAKAALQDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARK-AGALGAKLTGAGGG 267 (273)
T ss_pred -CHHHHHHHHHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-CCCceeeeccCCCC
Confidence 11111122222222 488999999999999999999999998876 79999999999999999 69999999999999
Q ss_pred ceeEEE
Q psy9976 327 GCAIAL 332 (349)
Q Consensus 327 G~~i~l 332 (349)
||+|+|
T Consensus 268 G~~i~l 273 (273)
T TIGR00549 268 GCMIAL 273 (273)
T ss_pred ceEEeC
Confidence 999986
No 11
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=4e-43 Score=337.16 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=228.7
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC---CCCCcCHhHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL---TPGAPKWANYVKG 83 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l---~~~~~~w~~~v~~ 83 (349)
|++|+|||.+.+.|..+|++ |||+++++.++++++..+++.|.++. .....|..+.. .+ .+...+|.+|+++
T Consensus 8 Kl~L~GEhavv~~G~pAl~~-aI~~~~~v~i~~~~~~~~~i~s~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 82 (358)
T TIGR01220 8 KLFVAGEYAVVEPGNPAILV-AVDRFVTVTVEDADGAADVIISSDLG---PQPVGWRRHDG-RLVVRDPDARSALAYVVS 82 (358)
T ss_pred eEEEeeeEEEecCCCeEEEE-EEcCcEEEEEEeCCCCceEEEecCCC---CCceEEEecCC-ceeecccccccchHHHHH
Confidence 78999999999888889999 99999999999999888899888763 22344443321 11 1123479999999
Q ss_pred HHHHH----HhcCCCCCceEEEEEeCCCCC----CCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC
Q psy9976 84 VVSIF----NDRVAPVPGFNAVILSSVPMG----SGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP 155 (349)
Q Consensus 84 ~~~~l----~~~~~~~~g~~i~i~s~iP~g----~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 155 (349)
++..+ ...+...+||++.|.|++|++ +|||||||++||++.|+..+++.++ ++++++++|+.+|+.++|.+
T Consensus 83 ~i~~~~~~~~~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l-~~~~l~~lA~~~E~~~~g~~ 161 (358)
T TIGR01220 83 AIETVERYAGERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLEL-SNDEIFKLAMLATAELQPKG 161 (358)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhhhCCCC
Confidence 98765 334556679999999999994 6999999999999999999999999 99999999999999999998
Q ss_pred ChhhHHHHHHhccCCeEEEEe-cC----------------------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHH
Q psy9976 156 CGIMDQYVSVMGEEGSALLID-CK----------------------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYA 212 (349)
Q Consensus 156 ~G~~D~~a~~~gg~~~~~~~d-~~----------------------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~ 212 (349)
+|. |+++++||| ++++. +. +..+++++++ ++++++|++|+.+++|...
T Consensus 162 sg~-D~~a~~~GG---~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~--~~~~l~v~~tg~~~~T~~~--- 232 (358)
T TIGR01220 162 SCG-DIAASTYGG---WIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP--KGLTLLIGWTGSPASTASL--- 232 (358)
T ss_pred Ccc-hhhhhhhCC---EEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC--CCCEEEEEeCCCCcCcHHH---
Confidence 887 999999999 55553 32 1235666665 4789999999999886421
Q ss_pred HHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q psy9976 213 VRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLR 292 (349)
Q Consensus 213 ~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr 292 (349)
++.+. +. +.. .++.+++..+.+.+. +.+++++|+++|++.||++|+++|..|+
T Consensus 233 ---------v~~V~-------------~~--~~~-~~~~~~~~l~~~~~i--~~~~~~al~~~d~~~lg~~~~~~~~lL~ 285 (358)
T TIGR01220 233 ---------VSDVH-------------RR--KWR-GSASYQRFLETSTDC--VESAITAFETGDITSLQKEIRRNRQELA 285 (358)
T ss_pred ---------HHHHH-------------HH--hhc-ChHHHHHHHHHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 11110 00 000 112233333334444 8899999999999999999999999998
Q ss_pred cc-----cCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhhhhhhc
Q psy9976 293 DD-----YEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 293 ~~-----~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~~~~~~ 345 (349)
.. .++|+|+++.|++.+++ .|+ |||+||||+|||+|+|++++ ..+++..++
T Consensus 286 ~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~ 342 (358)
T TIGR01220 286 RLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIAILDAEADITHVRQRW 342 (358)
T ss_pred HhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHH
Confidence 73 48999999999999999 697 99999999999999999764 455565543
No 12
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=3.8e-43 Score=325.81 Aligned_cols=274 Identities=25% Similarity=0.332 Sum_probs=220.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+|++|||+|++ |..++.+ |||++.++.++..++..+.+.+.++.. . .++. .+.. .|+..++.
T Consensus 8 KliL~GEHAVVy-G~pAI~~-aI~~~~~v~~~~s~~~~~~i~~~~~~~----~---~~~~------~~~~--~~~~~~v~ 70 (307)
T COG1577 8 KLILFGEHAVVY-GYPAIAA-AIDLRVTVTISESDSNKIVIESSDLKS----S---TLER------DEDE--GYIQAAVR 70 (307)
T ss_pred cEEEEecceeee-CCchhhe-eeeeeEEEEEEecCCCcEEEeccCCCC----c---cccc------cccc--hHHHHHHH
Confidence 899999999999 7789999 999999999999888899999987531 1 1111 0111 57777777
Q ss_pred HHHhcCC--CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 87 IFNDRVA--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 87 ~l~~~~~--~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
.+.+... +..||+++|.|+||+|+|||||||+.||++.|++.+++.++ +++++++++.++|..++|+|||+ |.+++
T Consensus 71 ~~~e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~l-s~~~l~~la~~~e~~vqG~~Sg~-D~a~~ 148 (307)
T COG1577 71 LASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVEL-SPEELAKLANKVELIVQGKASGI-DIATI 148 (307)
T ss_pred HHHHHhcccCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHcCCCCcc-cceEE
Confidence 6655433 56799999999999999999999999999999999999999 99999999999999999999998 99999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhc
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQ 244 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~ 244 (349)
+||| +++|... ..++++.++. .. .|+|.+++.+.+|... -+ .+.+++.
T Consensus 149 ~~gg---~v~~~~~-~~~~~l~~~~-~~-~~~I~~tg~~~sT~e~-V~-------~V~~l~~------------------ 196 (307)
T COG1577 149 TYGG---LVAFKKG-FDFEKLEIEL-LG-TLVIGDTGVPGSTKEL-VA-------GVAKLLE------------------ 196 (307)
T ss_pred EeCC---EEEEecC-CCcccccccc-CC-eEEEEEcCCcCcHHHH-HH-------HHHHHHH------------------
Confidence 9999 7777632 3456666655 23 6899999999887411 10 1111110
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 245 KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 245 ~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
. .++.+....+.+.+. +.++..+++++|.+.||++|+.+|..|.. .++|+|++|+|++.+++ .|+.|||+||||
T Consensus 197 -~-~~~~~~~~~~~ig~~--~~~a~~al~~~d~e~lgelm~~nq~LL~~-LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAG 270 (307)
T COG1577 197 -E-EPEVIDPILDAIGEL--VQEAEAALQTGDFEELGELMNINQGLLKA-LGVSTPELDELVEAARS-LGALGAKLTGAG 270 (307)
T ss_pred -h-hhHHHHHHHHHHHHH--HHHHHHHHhcccHHHHHHHHHHHHHHHHh-cCcCcHHHHHHHHHHHh-cCccccccccCC
Confidence 0 122234445555544 89999999999999999999999999976 88999999999999999 699999999999
Q ss_pred ccceeEEEeCCCc
Q psy9976 325 FGGCAIALVSPLN 337 (349)
Q Consensus 325 ~GG~~i~l~~~~~ 337 (349)
+|||+|+|+++.+
T Consensus 271 gGGc~IaL~~~~~ 283 (307)
T COG1577 271 GGGCIIALAKNEE 283 (307)
T ss_pred CCceEEEEeccch
Confidence 9999999999633
No 13
>PLN02677 mevalonate kinase
Probab=100.00 E-value=1.9e-41 Score=325.95 Aligned_cols=293 Identities=20% Similarity=0.267 Sum_probs=208.6
Q ss_pred HHHhhhhhceeeeCCcEEEecccccceEEEEEEecC----CCeEEEEecCCCCCCCCceEEeCCCcc-cCC----CC-Cc
Q psy9976 6 QRLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNN----SNQIHLHSDSARADKPTDISFDIPKVQ-KLT----PG-AP 75 (349)
Q Consensus 6 ~~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~----d~~i~v~s~~~~~~~~~~~~~~l~~~~-~l~----~~-~~ 75 (349)
-|+||+|||++.+ ||.+|++ |||+++++.+++++ .+.|.+...+. ....+|+.+... ... +. ..
T Consensus 9 gk~~l~Geh~~~~-g~~a~~~-ai~~~~~~~~~~~~~~~~~~~i~~~~~di----~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (387)
T PLN02677 9 GKIILAGEHAVVH-GSTAVAA-AIDLYTYVSLRFPPSAENDDTLKLQLKDL----GLEFSWPLARIKEALPDLGTPCPST 82 (387)
T ss_pred ccEEEeeeeeeec-CCeeeee-EeeceEEEEEEecCCCCCCCeEEEEcCCC----CceEEechHhhhhhhcccccccccc
Confidence 4899999999988 9999999 99999999998753 34555444332 122333332110 000 00 11
Q ss_pred CHh---HHHHHHHHHHHhcCCC----------------------CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhh
Q psy9976 76 KWA---NYVKGVVSIFNDRVAP----------------------VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESIT 130 (349)
Q Consensus 76 ~w~---~~v~~~~~~l~~~~~~----------------------~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~ 130 (349)
.|. ..+..+..++.+.+.+ ..++++.|.|+||+|+|||||||++||++.||..++
T Consensus 83 ~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~ 162 (387)
T PLN02677 83 PTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAAS 162 (387)
T ss_pred ccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 221 1222222333322222 458999999999999999999999999999999999
Q ss_pred CC-CC------------CCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEE
Q psy9976 131 DE-KT------------LKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLI 197 (349)
Q Consensus 131 ~~-~~------------~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll 197 (349)
+. +. .+.++++++|+.+|+.++|.|||+ |+++++||| ++.|+ +..+++++.+ ++++++|
T Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg---~I~f~--~~~~~~l~~~--~~l~llv 234 (387)
T PLN02677 163 DSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGN---MIKFK--SGELTRLQSN--MPLKMLI 234 (387)
T ss_pred CCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCC---eEEEc--CCCceecCCC--CCceEEE
Confidence 83 21 033688899999999999999999 999999998 55554 4455666654 4789999
Q ss_pred EeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q psy9976 198 INSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKE--- 274 (349)
Q Consensus 198 ~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~--- 274 (349)
+||+++++|... ++.+. +. +.. .+..++.....+.++ +.++.++|++
T Consensus 235 ~dTgv~~sT~~l------------V~~V~-------------~~--~~~-~p~~~~~il~~~~~i--~~~a~~al~~~~~ 284 (387)
T PLN02677 235 TNTRVGRNTKAL------------VAGVS-------------ER--ALR-HPDAMKSVFNAVDSI--SEELATIIQSPAE 284 (387)
T ss_pred EECCCCCcHHHH------------HHHHH-------------HH--HHh-CHHHHHHHHHHHHHH--HHHHHHHHhcccc
Confidence 999999997521 11111 00 000 233344445555555 8899999987
Q ss_pred ------CCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC----chhhhhhh
Q psy9976 275 ------GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL----NLRRGRKK 344 (349)
Q Consensus 275 ------~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~----~~~~~~~~ 344 (349)
+|+..||++|+.+|..|+. +++|+|.|+.+++.+++ .| ++||+||||+|||+|+|++++ .++++..+
T Consensus 285 ~~~~~~~~~~~Lg~lm~~N~~LL~~-LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~ 361 (387)
T PLN02677 285 DELSITEKEEKLKELMEMNQGLLQC-MGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAE 361 (387)
T ss_pred ccccccchHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEcccccchhHHHHHHHH
Confidence 5699999999999999986 89999999999999999 46 799999999999999999852 34445544
Q ss_pred c
Q psy9976 345 K 345 (349)
Q Consensus 345 ~ 345 (349)
+
T Consensus 362 l 362 (387)
T PLN02677 362 L 362 (387)
T ss_pred H
Confidence 3
No 14
>KOG0631|consensus
Probab=100.00 E-value=1.2e-41 Score=323.40 Aligned_cols=328 Identities=29% Similarity=0.403 Sum_probs=256.5
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCC-cccCCCCCcCHhHHH----HHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPK-VQKLTPGAPKWANYV----KGV 84 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~-~~~l~~~~~~w~~~v----~~~ 84 (349)
+.|| |+|++++-|+|| |||..+.+.+.+.+|..++|..++++.+ +...+++++. ...+.++.+.|.||+ +++
T Consensus 50 LiGE-HiDy~~~sVlpm-aid~~~l~~~~~~~d~~~sl~~tN~~~~-f~~~~~~~p~~~~~I~~~~~~w~ny~~C~~~g~ 126 (489)
T KOG0631|consen 50 LIGE-HIDYCGYSVLPM-AIDVDTLIAVAPSDDGIVSLRLTNFNPD-FIYFKYPLPSIVWQIDPDVSKWENYFYCGMKGF 126 (489)
T ss_pred cccc-eeeecCceeeeE-EeeeeeEEEEEEcCCCceeEEEecCCCc-cceeeccCCchhcccCCCccchhhhhccchHHH
Confidence 4555 899999999999 9999999999999999978888877543 4566677765 124566788999999 787
Q ss_pred HHHHHhcCC-CC--CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhh-CCCC-CCHHHHHHHHHHHHHhhcCCCChhh
Q psy9976 85 VSIFNDRVA-PV--PGFNAVILSSVPMGSGLSSSAALEVATYTFLESIT-DEKT-LKLTDKALACQEAEHSFAGVPCGIM 159 (349)
Q Consensus 85 ~~~l~~~~~-~~--~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~-~~~~-~~~~~l~~~a~~~E~~~~G~~~G~~ 159 (349)
.++++.... .. -|+.+...+++|.|+||+||||++++...|...+. |.++ ..+.+++.++..+|+ +.|.++|+|
T Consensus 127 h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~-~~G~~~gGm 205 (489)
T KOG0631|consen 127 HEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAES-YIGLNSGGM 205 (489)
T ss_pred HHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeec-ccCcCCCcH
Confidence 777743221 22 39999999999999999999999999888887776 7762 278999999998887 689999999
Q ss_pred HHHHHHhccCCeEEEEe--cCCCeeEEeeCCCCCCeEEEEEeCCCCcc---cChhhHHHHHHHHHHHHHHhchhccCCC-
Q psy9976 160 DQYVSVMGEEGSALLID--CKTHEARHIPLGDDHQYVFLIINSNVHHE---LSSSEYAVRRAQCKSVLDKLHRVSFRDV- 233 (349)
Q Consensus 160 D~~a~~~gg~~~~~~~d--~~~~~~~~l~~~~~~~~~~ll~~s~~~~~---~~~~~y~~r~~~~~~a~~~l~~~~l~~~- 233 (349)
||.++++|.+++++++| +.++....++++. .-.|++.++.+..+ +....||.|..||..+...+..+.+-+.
T Consensus 206 dq~asvl~~~~~Al~v~~~~~Pf~~~~lk~~~--~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~ 283 (489)
T KOG0631|consen 206 DQAASVLAEKGHALLVDPYFTPFRRSMLKLPD--GGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELP 283 (489)
T ss_pred HHHHHHHHhcCceEEecccCCccccccccCCC--CceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccH
Confidence 99999999999999999 4466666666653 33789999887654 4567899998777666655542111111
Q ss_pred ---------------------------------------CHHHHHHHHh-------cc--------cCCHHHHHHHHHHH
Q psy9976 234 ---------------------------------------SLKSLEDKHA-------QK--------LLSDEEYKRGHHVV 259 (349)
Q Consensus 234 ---------------------------------------~~~~~~~~~~-------~~--------~l~~~~~~r~~~~i 259 (349)
+.+++...+. +. ....+.++|+.|++
T Consensus 284 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v~~~~~k~~~rakHv~ 363 (489)
T KOG0631|consen 284 AYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAVDLQVKKLYQRAKHVY 363 (489)
T ss_pred HHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 1111111110 00 00126789999999
Q ss_pred HHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 260 TEIDRTYKGANALKEGD------FETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 260 ~e~~rv~~~~~al~~~d------~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
+|..|+.++..++.+.+ +..||+|||+||.+++.+|++||||+|+|++++++ +|.+|+|+||||||||+++++
T Consensus 364 sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTGaGwGGc~v~lv 442 (489)
T KOG0631|consen 364 SEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTGAGWGGCTVALV 442 (489)
T ss_pred HHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeeccccccceeeec
Confidence 99999999999987653 56689999999999999999999999999999999 799999999999999999999
Q ss_pred CCCchhhhhhh
Q psy9976 334 SPLNLRRGRKK 344 (349)
Q Consensus 334 ~~~~~~~~~~~ 344 (349)
+.+.++.+.+.
T Consensus 443 p~d~~~~~~~~ 453 (489)
T KOG0631|consen 443 PADLVDFAVAA 453 (489)
T ss_pred cccchHHHHHh
Confidence 98877776654
No 15
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=297.96 Aligned_cols=281 Identities=18% Similarity=0.234 Sum_probs=219.1
Q ss_pred eeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHH--HHhcC
Q psy9976 15 MVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSI--FNDRV 92 (349)
Q Consensus 15 ~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~--l~~~~ 92 (349)
+..++||.||++ +||+++|+.+.+..|++|+++.... ++. .+ .+.. ++. ..++.++.. +...+
T Consensus 22 y~~k~GGaVlna-tIdky~y~~i~~~~d~~I~~~~~~~--------~~v-~~--~~~~-~h~--~~~~~~l~r~~l~~~g 86 (333)
T COG2605 22 YCSKHGGAVLNA-TIDKYIYVTIEKGFDDEIRVRYDRT--------EFV-KS--YLEN-EHK--PLVVESLKRDFLEFNG 86 (333)
T ss_pred HHHhcCCEEEEe-eeeeEEEEEEccCCCceEEEecchH--------Hhh-hh--hHhh-cCc--hHHHHHHHHHHHhhcC
Confidence 467899999999 9999999999999999999884431 111 10 0000 111 255666652 33223
Q ss_pred CCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeE
Q psy9976 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSA 172 (349)
Q Consensus 93 ~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~ 172 (349)
.+ .+++...+|+|+|+|||||||++||++.|+..+-|..+ ++++|++.|..+|++.++.+.|.|||++++|||+|
T Consensus 87 ~~--~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~-~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFn-- 161 (333)
T COG2605 87 GT--PIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESL-GPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFN-- 161 (333)
T ss_pred CC--ceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHhccccccccHHHHHhCCce--
Confidence 22 29999999999999999999999999999999999999 99999999999999999999999999999999965
Q ss_pred EEEecCC---CeeEEeeCCCC----CCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 173 LLIDCKT---HEARHIPLGDD----HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 173 ~~~d~~~---~~~~~l~~~~~----~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
+++|.+ ..++++++... -+.++++++||+++..+ +++. +++.++. +
T Consensus 162 -fMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss---------------~V~~---------dQ~~~~~--~ 214 (333)
T COG2605 162 -FMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQSS---------------EVIE---------DQVRNVV--D 214 (333)
T ss_pred -EEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccchh---------------HHHH---------HHHHHhh--c
Confidence 445443 44567665431 24679999999988643 2221 2222220 0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-cCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-YEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
.++...++.|.+.+. +.++.++|-.+|+.+||++|+.+|+..+.. -.+|+|.+|.+++.|++ +||+|+|++|||
T Consensus 215 --~~~~~~e~~~~mk~~--A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG 289 (333)
T COG2605 215 --GDEETLEALHEMKAL--AYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAG 289 (333)
T ss_pred --ccHHHHHHHHHHHHH--HHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccC
Confidence 112234566767666 799999999999999999999999988773 58999999999999999 799999999999
Q ss_pred ccceeEEEeCCCchhhhhhhccC
Q psy9976 325 FGGCAIALVSPLNLRRGRKKKSL 347 (349)
Q Consensus 325 ~GG~~i~l~~~~~~~~~~~~~~~ 347 (349)
+||+++.+|++.+..++++.+..
T Consensus 290 ~gGFllf~~~p~k~~~l~r~l~~ 312 (333)
T COG2605 290 GGGFLLFFCDPSKRNELARALEK 312 (333)
T ss_pred CccEEEEEeCccchHHHHHHHHH
Confidence 99999999999999999887753
No 16
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=5.8e-39 Score=333.11 Aligned_cols=285 Identities=16% Similarity=0.179 Sum_probs=213.9
Q ss_pred eCCcEEEecccccce----EEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC--CCCCcCHhHHHHHHHH-----
Q psy9976 18 KRLQWIIMMDVRQVV----TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL--TPGAPKWANYVKGVVS----- 86 (349)
Q Consensus 18 ~~~G~vl~~~Ai~~~----~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l--~~~~~~w~~~v~~~~~----- 86 (349)
++||+|||+ |||++ +++.+++++|.+|++.|.++. ....++..+ .+ .....+|.+|+++++.
T Consensus 633 ynGG~VLn~-AId~~g~~pi~v~v~~~~d~~irl~S~d~~----~~~~v~~~~--~l~~~~~~~~~~~~~K~al~~~G~~ 705 (974)
T PRK13412 633 YSGGNVVNL-AIELNGQPPLQVYVKPCSEPHIVLRSIDLG----AMEVVRTNE--ELRDYKKVGSPFSIPKAALCLAGFA 705 (974)
T ss_pred cCCcEEEEE-EEeCCCCccEEEEEEECCCCeEEEEECCCC----CceEEecch--hhcccccccchHhhhhhhheecccc
Confidence 899999999 99996 999999999999999998863 122233211 12 1234579999998874
Q ss_pred ---------HHHhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCC
Q psy9976 87 ---------IFNDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPC 156 (349)
Q Consensus 87 ---------~l~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~ 156 (349)
.+++..... .||++.|.|+||+|+|||||||++||++.|+.++++.++ +++++++++..+|+.++|.+
T Consensus 706 ~~~~~~~~~~l~e~l~~~G~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~l-s~~ela~~A~~~E~~lhg~~- 783 (974)
T PRK13412 706 PRFSAESYASLEEQLKAFGSGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAW-DKNEICNRTLVLEQLLTTGG- 783 (974)
T ss_pred cccccchhHHHHHHHHhcCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHCCCC-
Confidence 222111111 599999999999999999999999999999999999999 99999999999998866555
Q ss_pred hhhHHHHHHhccCCeEEEEecCC-----CeeEEeeCCC----CCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhch
Q psy9976 157 GIMDQYVSVMGEEGSALLIDCKT-----HEARHIPLGD----DHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHR 227 (349)
Q Consensus 157 G~~D~~a~~~gg~~~~~~~d~~~-----~~~~~l~~~~----~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~ 227 (349)
|.|||+++++|| +.++++.+ ..++++|.+. ..+-+++|++||+++.+.. ++..
T Consensus 784 g~qDq~~a~~GG---~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~---------------iV~~ 845 (974)
T PRK13412 784 GWQDQYGGVLPG---VKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKG---------------ILAE 845 (974)
T ss_pred chhhhhhHhcCC---eEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHH---------------HHHH
Confidence 667999999999 67777543 1234444321 0134699999999887642 1110
Q ss_pred hccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-cCCCChhHHHHH
Q psy9976 228 VSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-YEVSCKELDDIA 306 (349)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~~vs~p~ld~l~ 306 (349)
.+... . ..+....+..+.+.++ +.++.+||+++|+++||++|+++|..++.. .++|+|++|.|+
T Consensus 846 ---------Vv~~~--~--~~~~~~~~~l~~ig~L--a~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li 910 (974)
T PRK13412 846 ---------IVRSM--F--LNSTAHLQLLHEMKAH--ALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAII 910 (974)
T ss_pred ---------HHHHH--H--hCcHHHHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 00000 0 0111223344445555 899999999999999999999999988872 499999999999
Q ss_pred HHHHcCCCCeEEEecccCccceeEEEeC-CCchhhhhhhcc
Q psy9976 307 HCAQSLPGVLGCRMTGGGFGGCAIALVS-PLNLRRGRKKKS 346 (349)
Q Consensus 307 ~~a~~~~Ga~gakltGaG~GG~~i~l~~-~~~~~~~~~~~~ 346 (349)
+.|++ ||+|+|+||||+|||++++++ ++.++++++++.
T Consensus 911 ~~A~~--gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~ 949 (974)
T PRK13412 911 ELIKD--YTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILT 949 (974)
T ss_pred HHHHc--CCcEEEecccCcccEEEEEECChhhHHHHHHHHH
Confidence 99975 799999999999999999995 566777776653
No 17
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=3.9e-38 Score=296.93 Aligned_cols=271 Identities=26% Similarity=0.332 Sum_probs=209.4
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++|||.+.+ ||.+|++ |||+++++.++++++ .+++.+... + .+.|.++++.++.
T Consensus 9 kv~L~Geh~~~~-g~~~l~~-aI~~~~~v~i~~~~~-~~~i~~~~~------------~--------~~~~~~~~~~~~~ 65 (302)
T PRK03926 9 KIYLFGEHAVVY-GKPAIAC-AIDLRTYVRAEFNDD-SIYIESDYG------------K--------TGEKHPYVSAAIE 65 (302)
T ss_pred EEEEEecceeec-CCeEEEE-EecceEEEEEEECCC-ceEEecccc------------c--------ccchhHHHHHHHH
Confidence 567889877666 9999999 999999999987754 344432110 0 1146678999998
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+... .+|++++++++||+++|||||||+++|++.+++++++.++ ++++++++|+++|+.++|.++|. |+++++|
T Consensus 66 ~~~~~~~-~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l-~~~~l~~la~~~E~~~~G~~sg~-D~~~~~~ 142 (302)
T PRK03926 66 KMREEAD-KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGL-SLEEIAKLGHKVELLVQGAASPT-DTYVSTM 142 (302)
T ss_pred HHHHhcC-CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHcCCCchH-HHHHHhc
Confidence 8876533 4599999999999999999999999999999999999999 99999999999999999999996 9999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|| .++++... ++ +. +++.++|++|+.+.+|. ..|...+. +++.
T Consensus 143 Gg---~~~~~~~~----~l--~~-~~~~~vl~~~~~~~sT~-~~~~~~~~-------------~~~~------------- 185 (302)
T PRK03926 143 GG---FVTIPDRK----KL--PF-PECGIVVGYTGSSGSTK-ELVANVRK-------------LKEE------------- 185 (302)
T ss_pred CC---eEEEcCCC----cC--CC-CCceEEEEECCCCCcHH-HHHHHHHH-------------HHHh-------------
Confidence 98 45554222 33 33 47889999999988764 22221110 0000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
.++.+....+.+.+. +.++..++.++|++.||++|+++|..+ +.+++++|+++.+++.+++ .|++|+||||||+|
T Consensus 186 -~~~~~~~~~~~~~~~--~~~~~~al~~~d~~~l~~~~~~~~~~~-~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~G 260 (302)
T PRK03926 186 -YPELIEPILSSIGKI--SEKGEELILSGDYVSLGELMNINQGLL-DALGVSTKELSELIYAART-AGALGAKITGAGGG 260 (302)
T ss_pred -CHHHHHHHHHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCC
Confidence 111122222233333 566778999999999999999999755 5589999999999999999 69999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++++++
T Consensus 261 g~v~~l~~~~~~~~~~~~~ 279 (302)
T PRK03926 261 GCMVALAAPEKQSEVATAI 279 (302)
T ss_pred CEEEEEeccccHHHHHHHH
Confidence 9999999988888777654
No 18
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=1.4e-36 Score=289.10 Aligned_cols=282 Identities=17% Similarity=0.202 Sum_probs=205.9
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecC-CCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNN-SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~-d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~ 85 (349)
|.+++||.+|++. ...+.. +||++..+.++..+ ++.+.+.+... .++.+ ...-.|++..+.
T Consensus 18 kvil~GEHaVvyg-~~aI~~-~I~~~d~~~i~~~~~~~~~~~~~~~~--------~~~~~--------~~~~~n~~~~a~ 79 (328)
T PTZ00298 18 KVILFGEHFVVYG-AEAIVA-GIDEYTECRLELTKGVPGLQVVDQRP--------AVPGY--------IVEKREEQRKAH 79 (328)
T ss_pred eEEEEecceeecC-Cchhhh-ecccceEEEEEEccCCCCceeccccc--------cccch--------HHHhHHHHHHHH
Confidence 6788999988864 455557 99998776665443 22222222110 01100 001136666666
Q ss_pred HHHHhc-CCC--CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy9976 86 SIFNDR-VAP--VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY 162 (349)
Q Consensus 86 ~~l~~~-~~~--~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~ 162 (349)
..+.+. +.. .+|++|+|.++||+++|||||||++||++.+++++++.++ +++++++++..+|+.++|.|+|. |++
T Consensus 80 ~~~~~~~~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~l-s~~el~~~a~~~E~~~~g~~sG~-D~~ 157 (328)
T PTZ00298 80 QLVLRHLNIDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNL-TEEEVNLSAFVGEGGYHGTPSGA-DNT 157 (328)
T ss_pred HHHHHHHhcccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCChH-HHH
Confidence 665442 322 2599999999999999999999999999999999999999 99999999999999999999998 999
Q ss_pred HHHhccCCeEEEEecCC--CeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHH
Q psy9976 163 VSVMGEEGSALLIDCKT--HEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLED 240 (349)
Q Consensus 163 a~~~gg~~~~~~~d~~~--~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~ 240 (349)
++++|| +++++... ..+++++++ +++.+++++|+.+.+|. ..|...+. +++..++
T Consensus 158 ~~~~Gg---~~~~~~~~g~~~~~~l~~~--~~~~lvv~~~~~~~sT~-~~~~~v~~-------------~~~~~p~---- 214 (328)
T PTZ00298 158 AATYGG---LISYRRVNGKSVFKRIAFQ--QPLYLVVCSTGITASTT-KVVGDVRK-------------LKENQPT---- 214 (328)
T ss_pred HHHcCC---eEEEecCCCccceeEecCC--CCCeEEEEECCCchhHH-HHHHHHHH-------------HHhcCHH----
Confidence 999998 56655332 235666655 47789999999988864 22321110 0111111
Q ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEe
Q psy9976 241 KHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRM 320 (349)
Q Consensus 241 ~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakl 320 (349)
.+.+....+.+ ++.++..+|.++|++.++++|+++|+.++. +++++|+++.+++.+++ .|++|+||
T Consensus 215 ----------~~~~~~~~~~~--~~~~~~~al~~~d~~~lg~~m~~~~~~l~~-~~v~~p~l~~l~~~~~~-~Ga~gakl 280 (328)
T PTZ00298 215 ----------WFNRLLENYNA--CVSEAKEALQKGNLFRVGELMNANHDLCQK-LTVSCRELDSIVQTCRT-YGALGAKM 280 (328)
T ss_pred ----------HHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHh-CCCceeEe
Confidence 11222233332 378889999999999999999999999986 78999999999999999 69999999
Q ss_pred cccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 321 TGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 321 tGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
||+|+|||+++|+++ +.++++.+.+
T Consensus 281 SGsG~GG~v~al~~~~~~a~~~~~~l 306 (328)
T PTZ00298 281 SGTGRGGLVVALAASEDQRDAIAKAV 306 (328)
T ss_pred ccCCCCeEEEEEecchhhHHHHHHHH
Confidence 999999999999976 5566665443
No 19
>KOG1511|consensus
Probab=100.00 E-value=2.5e-31 Score=243.09 Aligned_cols=287 Identities=21% Similarity=0.255 Sum_probs=197.0
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc--------c---------
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ--------K--------- 69 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~--------~--------- 69 (349)
|.+++||-+|++ |..+|++ +||++||+.+.+..+++|.+.-.+.. -...|.+++.. .
T Consensus 12 KvILfGEHAVVy-g~~AlAa-ai~LrTyl~l~~san~~i~l~l~di~----~~~~w~l~~~~~~l~~~~~~~~~~q~p~~ 85 (397)
T KOG1511|consen 12 KVILFGEHAVVY-GRTALAA-AIDLRTYLRLQTSANDRILLQLPDIS----IEKAWSLADFNGALPEQRSTYESVQTPAS 85 (397)
T ss_pred cEEEeccceeEE-CCceeEE-EeecceeEEEEecCCCeEEEecccCC----ceEEEEhhhhhhhhhhhhhhhhccCCcch
Confidence 667899988876 5678888 99999999998888888887655542 23455554310 0
Q ss_pred ---------CCC---CCcCHhHH--HHHHHHHHHhcCC----CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhC
Q psy9976 70 ---------LTP---GAPKWANY--VKGVVSIFNDRVA----PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITD 131 (349)
Q Consensus 70 ---------l~~---~~~~w~~~--v~~~~~~l~~~~~----~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~ 131 (349)
+.. ....-..+ +...++.|.-... ..+.+++.+.|++|+|+|||||||++|+++.++..+.|
T Consensus 86 ~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g 165 (397)
T KOG1511|consen 86 EVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALATALLRLAG 165 (397)
T ss_pred hhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcc
Confidence 000 00000000 1111222211111 23349999999999999999999999999999998776
Q ss_pred CCC----------CCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCC
Q psy9976 132 EKT----------LKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSN 201 (349)
Q Consensus 132 ~~~----------~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~ 201 (349)
.-- .+.+-+-+.|...|+.+||+|||+ |+++|.||| ++.|. +..+++.++.. |.++++++||.
T Consensus 166 ~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~Gg---~i~f~-kg~~~~~Lk~~--~~L~illtnTr 238 (397)
T KOG1511|consen 166 LIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYGG---LISFK-KGVEIESLKHL--PPLRILLTNTR 238 (397)
T ss_pred cCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccCc---eEEee-cCccceecccC--CCceEEEEccc
Confidence 421 023566788999999999999999 999999999 44443 22256665433 68999999999
Q ss_pred CCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc----CCH
Q psy9976 202 VHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKE----GDF 277 (349)
Q Consensus 202 ~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~----~d~ 277 (349)
++++|....-. ++.+ ..++| ++.+.....+.++ ..++...+.+ .+.
T Consensus 239 v~RnTk~lVa~---------Vr~~------------------~~kfP-evi~~i~~aid~i--s~ea~~il~~e~~~~~~ 288 (397)
T KOG1511|consen 239 VPRNTKALVAG---------VREL------------------LEKFP-EVIKAIFDAIDEI--SLEAVWILQRENDEFSS 288 (397)
T ss_pred cCccHHHHHHH---------HHHH------------------HHhhh-HHHHHHHHHHHHH--HHHHHHHHhcccccCCC
Confidence 99998632110 0011 01112 2223344444455 6777777763 122
Q ss_pred H---HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchh
Q psy9976 278 E---TFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLR 339 (349)
Q Consensus 278 ~---~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~ 339 (349)
. ++.++|..||..|.. .|||+|.+|.++...++ .| +.+|+||||+|||+++|++++.-+
T Consensus 289 ~~Eq~L~eLi~iNq~LL~a-lGVsH~~le~v~~~t~k-~g-i~sKLTGAGgGGc~itlL~~~~~q 350 (397)
T KOG1511|consen 289 PKEQKLEELIRINQDLLDA-LGVSHPSLELVCTTTRK-LG-IHSKLTGAGGGGCVITLLKPGTEQ 350 (397)
T ss_pred cHHHHHHHHHHHhHHHHHH-hCCCcHHHHHHHHHHHH-hC-cceecccCCCCceEEEEECCCCch
Confidence 2 599999999998855 99999999999999999 48 688999999999999999997633
No 20
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=4.2e-28 Score=236.43 Aligned_cols=310 Identities=14% Similarity=0.080 Sum_probs=202.5
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCC--C----eEEEEecCCCCCCCCceEEeCCCcc-cCC-------C
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNS--N----QIHLHSDSARADKPTDISFDIPKVQ-KLT-------P 72 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d--~----~i~v~s~~~~~~~~~~~~~~l~~~~-~l~-------~ 72 (349)
||||||||.|..++-..+-. |+|.++++++++..+ . +|+|.|.+|. .....|...... .+. .
T Consensus 7 KlliAGgYlVLep~y~aiVv-al~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~---~~~~~y~~~~~~~~~~~~~~~~~~ 82 (454)
T TIGR01219 7 KVLMAGGYLVLDKPYAGLVL-GLNARFYAIVKPINEEVGAWKWDVRVKSPQFS---DREWLYKISLNHLTLQSVSASDSR 82 (454)
T ss_pred eEEEecceEEecCCCcEEEE-EecceEEEEEeecccccccCcceEEEeCCCCC---CCceEEEEecCCccceeecccccC
Confidence 89999999888876655556 999999999976432 1 5788999874 123344332210 000 0
Q ss_pred CCcCHhHHHHHHHHHH----HhcCCC---CCceEEEEEeCC-------------------CC--------CCCCChHHHH
Q psy9976 73 GAPKWANYVKGVVSIF----NDRVAP---VPGFNAVILSSV-------------------PM--------GSGLSSSAAL 118 (349)
Q Consensus 73 ~~~~w~~~v~~~~~~l----~~~~~~---~~g~~i~i~s~i-------------------P~--------g~GLgSSaA~ 118 (349)
...+| .||..++... ...+.. +++++|+|.||. +. +.|||||||+
T Consensus 83 ~~~~n-~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAv 161 (454)
T TIGR01219 83 NPFVN-PFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAM 161 (454)
T ss_pred CCCCC-hHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHH
Confidence 12233 4776666543 333333 678999998887 22 7999999999
Q ss_pred HHHHHHHHHHhhCCCCC------------CHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhccCCeEEEEecCCC-----
Q psy9976 119 EVATYTFLESITDEKTL------------KLTDKALACQEAEHSFAGV-PCGIMDQYVSVMGEEGSALLIDCKTH----- 180 (349)
Q Consensus 119 ~vA~~~al~~~~~~~~~------------~~~~l~~~a~~~E~~~~G~-~~G~~D~~a~~~gg~~~~~~~d~~~~----- 180 (349)
+||++.||..+++.... +++.+.++|+.+|...+|+ +||. |.++++||| +.|.+|.+.
T Consensus 162 tVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~-DvAaavyGg---i~Y~rfd~~~l~~~ 237 (454)
T TIGR01219 162 TTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGF-DVSAAVYGS---QRYRRFSPELISFL 237 (454)
T ss_pred HHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCch-hhhhhhcCc---eEEEecChhhhhhh
Confidence 99999999999986652 5789999999999999996 6887 999999999 677777542
Q ss_pred -----------------------eeEEeeCCCCCCeEEEEEeCCCCcccChhh--HHHHHHH-HHHHHHHhchhccCCCC
Q psy9976 181 -----------------------EARHIPLGDDHQYVFLIINSNVHHELSSSE--YAVRRAQ-CKSVLDKLHRVSFRDVS 234 (349)
Q Consensus 181 -----------------------~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~--y~~r~~~-~~~a~~~l~~~~l~~~~ 234 (349)
+++++++| ++++++|.+++.+.+|.... ...++++ -+.+..++.
T Consensus 238 ~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP--~~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i~~-------- 307 (454)
T TIGR01219 238 QVAITGLPLNEVLGTIVKGKWDNKRTEFSLP--PLMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESRENWQ-------- 307 (454)
T ss_pred hccccccchhhhHHHHhccCCCCceeeccCC--CCCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHHHH--------
Confidence 22344444 58999999999998875321 0000000 000001110
Q ss_pred HHHHHHHHhcccCCHHHHHHHHH--HHHHH--HHHHHHHHHHhcC--------CHHHHHHHHHHHHHhhhcc-----cCC
Q psy9976 235 LKSLEDKHAQKLLSDEEYKRGHH--VVTEI--DRTYKGANALKEG--------DFETFGKLMNESHDSLRDD-----YEV 297 (349)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~r~~~--~i~e~--~rv~~~~~al~~~--------d~~~lg~lm~~s~~~lr~~-----~~v 297 (349)
.+... ++.+.....+ ...+. .--..+++.|..+ |+..+.+.|..+...||+. ..|
T Consensus 308 --~l~~a------N~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~I 379 (454)
T TIGR01219 308 --NLSDA------NLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDI 379 (454)
T ss_pred --HHHHH------HHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcc
Confidence 00000 0000000000 00000 0011223344445 7888999999999888763 367
Q ss_pred CChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCc--hhhhhh
Q psy9976 298 SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLN--LRRGRK 343 (349)
Q Consensus 298 s~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~--~~~~~~ 343 (349)
-+|++..|++.+.+++|++||+.+|||||+|+++|+..+. .+.+.+
T Consensus 380 Ep~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~ 427 (454)
T TIGR01219 380 EPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQ 427 (454)
T ss_pred cCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHH
Confidence 8999999999999999999999999999999999997753 344444
No 21
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=9.7e-27 Score=217.72 Aligned_cols=251 Identities=17% Similarity=0.170 Sum_probs=182.7
Q ss_pred hhhhhceee-eCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHH
Q psy9976 9 YLLKSLMVK-KRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSI 87 (349)
Q Consensus 9 ~~~~~~~~~-~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~ 87 (349)
.|.|+ +.| +|...++++ |||++.++.+++.+++.+++.+... .++ ..|.|++..++..
T Consensus 16 ~i~g~-~~dg~h~l~si~~-ai~l~~~v~v~~~~~~~~~i~~~~~----------~~~---------~~~~n~~~~~~~~ 74 (286)
T PRK00128 16 DVLGK-REDGYHEVEMIMQ-TIDLADRLEIEKLKEDGIVVESNNR----------YVP---------NDERNLAYKAAKL 74 (286)
T ss_pred ecCcc-CCCCcceeheeeE-ecCCCcEEEEEECCCCCEEEEeCCC----------CCC---------CCCCcHHHHHHHH
Confidence 34555 344 555569999 9999999999887766677665321 011 1244688888877
Q ss_pred HHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy9976 88 FNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167 (349)
Q Consensus 88 l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g 167 (349)
+.+.....+|++++|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++|. |.+++++|
T Consensus 75 ~~~~~~~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l-~~~~l~~~a~~~g~----------dv~~~~~G 143 (286)
T PRK00128 75 LKERYNIKQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGL-SLEELAEIGLEIGS----------DVPFCIYG 143 (286)
T ss_pred HHHhcCCCCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCc-CHHHHHHHHHHhCC----------CCCeEeeC
Confidence 76654334689999999999999999999999999999999999999 99999999998853 88889999
Q ss_pred cCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 168 EEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 168 g~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
| .++.+..+..+.+++.+ ++..+++++|+...+|. ..| +.+.. .
T Consensus 144 g---~~~~~~~g~~~~~~~~~--~~~~~vv~~p~~~~~T~-~~~-----------~~~~~--------~----------- 187 (286)
T PRK00128 144 G---TALATGRGEKITPLKSP--PSCWVVLAKPDIGVSTK-DVY-----------KNLDL--------D----------- 187 (286)
T ss_pred C---eEEEecCCcccccCCCC--CCcEEEEEcCCCCCCHH-HHH-----------hcCcc--------c-----------
Confidence 8 55555444445555433 46779999999877653 111 11100 0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCC-CChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEV-SCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~v-s~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+.. ...+..+..++.++|++.++++|+ +.++. +.+ .+|+++.+++.+++ .|++|++|||+|
T Consensus 188 ------~~~-----~~~~~~~~~~l~~~d~~~~~~~~~---n~l~~-~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG-- 249 (286)
T PRK00128 188 ------KIS-----HPDTEKLIEAIEEGDYQGICANMG---NVLEN-VTLKKYPEIAKIKERMLK-FGADGALMSGSG-- 249 (286)
T ss_pred ------ccc-----CcchHHHHHHHhcCCHHHHHHhcc---CcHHH-HHHhhChHHHHHHHHHHh-cCCCeeEEcccC--
Confidence 000 001466788899999999999885 33433 555 48999999999999 699999999998
Q ss_pred ceeEEEeCCC-chhhhhhhc
Q psy9976 327 GCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~-~~~~~~~~~ 345 (349)
+|+++|++++ .++++.+.+
T Consensus 250 ~sv~~l~~~~~~~~~i~~~l 269 (286)
T PRK00128 250 PTVFGLFDDESRAQRIYNGL 269 (286)
T ss_pred ccEEEEeCCHHHHHHHHHHh
Confidence 9999999773 455555543
No 22
>PLN02451 homoserine kinase
Probab=99.95 E-value=1.1e-25 Score=216.54 Aligned_cols=263 Identities=16% Similarity=0.206 Sum_probs=187.0
Q ss_pred CC--cE-EEeccccc-ceEEEEEEecCC---CeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHh-
Q psy9976 19 RL--QW-IIMMDVRQ-VVTVLLGSRNNS---NQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFND- 90 (349)
Q Consensus 19 ~~--G~-vl~~~Ai~-~~~~v~~~~~~d---~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~- 90 (349)
|- |+ ++.+ |+| +|..+.+++.++ +.+.|.+.... . ...+.+ +-.|++..++..+.+
T Consensus 64 NLGpgfD~lG~-a~d~l~d~v~~~~~~~~~~~~~~i~~~~g~---~--~~l~~~----------~~~Nlv~~a~~~~~~~ 127 (370)
T PLN02451 64 NLGPGFDFLGC-AVDGLGDFVTARVDPGVRPGEVSISEITGD---T--GRLSKD----------PLRNCAGIAAIATMKL 127 (370)
T ss_pred hcccChhhhhh-hhccCcCEEEEEECCCCCcccEEEEEeccc---c--ccCCCC----------cccCcHHHHHHHHHHH
Confidence 55 55 8999 999 999999887653 35666642210 0 011111 112677666665544
Q ss_pred cCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH-HHhccC
Q psy9976 91 RVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV-SVMGEE 169 (349)
Q Consensus 91 ~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a-~~~gg~ 169 (349)
.+....|++|+|.++||+|+|||||||+++|++.+++++++.++ +++++++++.++|..+.|.. +|+++ +++||
T Consensus 128 ~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~l-s~~eL~~la~~~E~~v~g~h---~Dnva~a~~GG- 202 (370)
T PLN02451 128 LGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPL-GKDDLVLAGLESEAKVSGYH---ADNIAPALMGG- 202 (370)
T ss_pred cCCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhchhcCCC---ccchhHhhcCC-
Confidence 45445699999999999999999999999999999999999999 99999999999999888752 59887 78998
Q ss_pred CeEEEEe-cCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 170 GSALLID-CKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 170 ~~~~~~d-~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
.++.+ ..+.++.+++++..+++.++++.++.+.+|. ++.+.+.... +
T Consensus 203 --~v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~------------~ar~~lp~~~------------------~ 250 (370)
T PLN02451 203 --FVLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTK------------KMRAALPKEI------------------P 250 (370)
T ss_pred --EEEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHH------------HHHHHHhhhc------------------c
Confidence 45554 4444556666653247899999999888764 2222332100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccce
Q psy9976 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328 (349)
Q Consensus 249 ~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~ 328 (349)
...+ +.+..|+..+..+|.++|++.+++.|++.|.. +.....++|+++.+++.+++ .|++|++|||+| +|
T Consensus 251 -----~~~~-v~~~~~~~~l~~al~~~d~~~l~~~m~nD~~~-e~~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSG--pt 320 (370)
T PLN02451 251 -----MKHH-VWNCSQAAALVAAILQGDAVLLGEALSSDKIV-EPTRAPLIPGMEAVKKAALE-AGAYGCTISGAG--PT 320 (370)
T ss_pred -----hhhH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-HHHHhhhCccHHHHHHHHHH-CCCeEEEEEccc--hh
Confidence 0111 11234466778999999999999999865432 22235689999999999999 699999999987 89
Q ss_pred eEEEeCCC-chhhhhhh
Q psy9976 329 AIALVSPL-NLRRGRKK 344 (349)
Q Consensus 329 ~i~l~~~~-~~~~~~~~ 344 (349)
+++|++++ .++++.++
T Consensus 321 vfal~~~~~~a~~i~~~ 337 (370)
T PLN02451 321 AVAVIDDEEKGEEVGER 337 (370)
T ss_pred eEEEEcCHHHHHHHHHH
Confidence 99999853 45555443
No 23
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.94 E-value=6.8e-25 Score=202.16 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=165.8
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVP 107 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP 107 (349)
+||+++.+.+++.++..+.+.+.. . .|++..++..+.+.....+|+++++.++||
T Consensus 20 aI~~~~~v~v~~~~~~~~~~~~~~----------------------~---~n~i~~~~~~~~~~~~~~~g~~i~i~s~iP 74 (261)
T TIGR01920 20 GIDLWVEAKVREGDEAGVSTYVRG----------------------N---PRLIERILTAIRSKFGIVDGLEVEVESEIP 74 (261)
T ss_pred EccCceEEEEEECCCCceeeeecC----------------------C---hHHHHHHHHHHHHhcCCCCCEEEEEecCCC
Confidence 778888888877665554433311 0 168888888777654434799999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcC-CCChhhHHHHHHhccCCeEEEEecCCCeeE-Ee
Q psy9976 108 MGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAG-VPCGIMDQYVSVMGEEGSALLIDCKTHEAR-HI 185 (349)
Q Consensus 108 ~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G-~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~-~l 185 (349)
+++|||||||+++|++.+++++++.++ +++++++++.++|+..++ .++|.+|+++++||| +++.+.++.... .+
T Consensus 75 ~~~GLGSSaA~~~a~~~al~~~~~~~l-~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~~~~~~~~~~~~~~ 150 (261)
T TIGR01920 75 AGSGLKSSSALVNALVEAVLKAKGVEI-DDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IVITDNRRMKILKRD 150 (261)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EEEEeCCCceEEEec
Confidence 999999999999999999999999999 999999999999998764 456777999999999 677776554333 23
Q ss_pred eCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q psy9976 186 PLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRT 265 (349)
Q Consensus 186 ~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv 265 (349)
++ |+..++++.++...+|... . ...+. .. . ..+
T Consensus 151 ~~---~~~~~vv~~p~~~~tt~~~--~---------~~~l~---------------------------~~----~--~~~ 183 (261)
T TIGR01920 151 KL---EGCTAAVLVPKEGERRENV--D---------LNRFR---------------------------RI----S--PVV 183 (261)
T ss_pred CC---CCceEEEEECCCCcccccc--c---------HHHhh---------------------------hc----c--hHH
Confidence 32 3457788888764433200 0 01110 00 0 115
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhh
Q psy9976 266 YKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 266 ~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~ 344 (349)
.++.++++.+|+. ++|+.+|..+....+++++ +++.+++ .|++|++|||+ |||+++|+++. +++.+.
T Consensus 184 ~~~~~~~~~~~l~---~am~~n~~l~~~~lg~~~~----~i~~a~~-~Galga~lSGa--G~sv~aL~~~~--~~v~~~ 250 (261)
T TIGR01920 184 EEAFNLALRGEYL---KAMVLNGVAYATALGYPLE----PASKALE-AGAAAAGLSGK--GPSYFALTEDP--EEAAEA 250 (261)
T ss_pred HHHHHHHhhCCHH---HHHhhChHHhHHhhCCChH----HHHHHHH-cCCcEEeecCC--CCeEEEEeCCH--HHHHHH
Confidence 6667788888877 6788888766456777775 4566888 69999999997 59999998765 444443
No 24
>PRK01212 homoserine kinase; Provisional
Probab=99.94 E-value=1.7e-24 Score=203.98 Aligned_cols=252 Identities=19% Similarity=0.253 Sum_probs=178.1
Q ss_pred cE-EEecccccceEEEEEEecCC-C-e--EEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCC
Q psy9976 21 QW-IIMMDVRQVVTVLLGSRNNS-N-Q--IHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPV 95 (349)
Q Consensus 21 G~-vl~~~Ai~~~~~v~~~~~~d-~-~--i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~ 95 (349)
|| +|.+ +++.+.++.+.+.++ . . +++..... . +++. .+ -.|.+..++..+.+.....
T Consensus 18 gfd~lG~-al~~~d~l~~~~~~~~~~~~~~~~~~~~~-----~----~~p~----~~----~~Nli~~a~~~~~~~~~~~ 79 (301)
T PRK01212 18 GFDSLGL-ALSLYDEVLVGDVVSVEAEFSIEVIGEGA-----D----KLPL----DP----EKNLVYQAALKFLEKLGKP 79 (301)
T ss_pred Chhhhhc-cccCccEEEEEEccCCCCceEEEEEecCC-----C----cCCC----CC----ccccHHHHHHHHHHHcCCC
Confidence 45 7888 999999999887543 2 2 44332110 0 1110 00 1267777777776543334
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
+|++|.|.++||.++|||||||.++|++.+++++++.++ +.++++++|.++|. ++- |...+++|| .++.
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l-~~~eL~~~a~~~e~------~~d-dv~~~l~GG---~~~~ 148 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPL-SKEELLQLATEGEG------HPD-NVAPALLGG---LVLA 148 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcC------CHH-HHHHHHhCC---EEEE
Confidence 689999999999999999999999999999999999999 99999999999986 221 556689998 4555
Q ss_pred -ecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHH
Q psy9976 176 -DCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKR 254 (349)
Q Consensus 176 -d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r 254 (349)
+..+..+++++.+ +++++++++|+...+|. .+.+.+.. +. +
T Consensus 149 ~~g~g~~~~~~~~~--~~~~~vlv~p~~~~sT~------------~a~~~l~~----~~--------------~------ 190 (301)
T PRK01212 149 LEENGVISVKIPVF--DDLKWVVAIPNIELSTA------------EARAVLPK----QY--------------S------ 190 (301)
T ss_pred EECCceEEEEecCC--CCeEEEEEECCCcCCHH------------HHHHhCcC----cC--------------C------
Confidence 3555567777665 47889999999877653 22222321 00 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 255 GHHVVTEIDRTYKGANALKEGDFETFGKLMNES-HDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 255 ~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s-~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
..+.+.+..|+..+..+|.++|++.+++.|+.. |+..+ ...+|+++.+++.+++ .|++|++|||+| +|+++|+
T Consensus 191 ~~~~~~~~~~~~~l~~al~~~d~~~~~~~~~~~~~~~~~---~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~ 264 (301)
T PRK01212 191 LKDAVFNSSRAALLVAALYTGDYELAGRAMKDVLHEPYR---AKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALC 264 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHhchhheHHhH---HhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEe
Confidence 011223345677889999999999999998432 33332 2356999999999999 699999999987 9999999
Q ss_pred CCCchhhhhhhc
Q psy9976 334 SPLNLRRGRKKK 345 (349)
Q Consensus 334 ~~~~~~~~~~~~ 345 (349)
+++..+++.+++
T Consensus 265 ~~~~~~~~~~~l 276 (301)
T PRK01212 265 DKEDAEKVADAL 276 (301)
T ss_pred ccccHHHHHHHH
Confidence 876555555443
No 25
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=6.5e-25 Score=207.77 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=185.0
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHH
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFN 89 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~ 89 (349)
|.|++---++.+.++++ +||++.++.+++.+++.+++.+... .++. ...|++..++..+.
T Consensus 18 i~g~~~dGy~~l~~~~~-~i~l~d~v~v~~~~~~~~~~~~~~~----------~~~~---------~~~n~~~~~~~~~~ 77 (312)
T PRK02534 18 ILGDRPDGFHELAMVMQ-SIDLADRLELRNNGDGTIRLHCDHP----------QLST---------DDDNLIYRAAQLLR 77 (312)
T ss_pred cCccCCCCCCceEEEEE-ECCCCCEEEEEECCCCcEEEEECCC----------CCCC---------CchhHHHHHHHHHH
Confidence 34664222555568888 9999999999887776677655321 1110 12478888888776
Q ss_pred hc-CCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhcc
Q psy9976 90 DR-VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168 (349)
Q Consensus 90 ~~-~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg 168 (349)
+. +...+|++|+|.++||+++|||||||+++|++.+++++++.++ ++++++++|.++|. |..++++||
T Consensus 78 ~~~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l-~~~~l~~~a~~~g~----------dv~~~~~GG 146 (312)
T PRK02534 78 KRFPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGL-TQPELESLAAELGS----------DVPFCIAGG 146 (312)
T ss_pred HHhCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC----------CCcEEeECC
Confidence 65 4334699999999999999999999999999999999999999 99999999988752 778889998
Q ss_pred CCeEEEEecCCCeeEEeeCCCCCCeEEEEE-eCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 169 EGSALLIDCKTHEARHIPLGDDHQYVFLII-NSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 169 ~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~-~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
..+....+..+++++.+ +++.++++ +++...+|. ..|..-| +.+..+ .+.
T Consensus 147 ---~~~~~~~g~~~~~~~~~--~~~~~vv~~~p~~~~~T~-~a~~~~~-------~~~~~~----~~~------------ 197 (312)
T PRK02534 147 ---TQLCFGRGEILEPLPDL--DGLGVVLAKYPSLSVSTP-WAYKTYR-------QQFGDT----YLS------------ 197 (312)
T ss_pred ---eEEEECCCCEeEECCCC--CCcEEEEEECCCCCccHH-HHHHHHh-------hhcccc----ccc------------
Confidence 33333334446666654 47888887 698887653 2221111 111110 000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHH-cCCCCeEEEecccCcc
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQ-SLPGVLGCRMTGGGFG 326 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~-~~~Ga~gakltGaG~G 326 (349)
.+ .....+.+..|...+..+|.++|++.+++.| |+.+|....-..|+++++++.++ + .|++|+.|||+|
T Consensus 198 ~~----~~~~~~~~~~~~~~l~~al~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG-- 267 (312)
T PRK02534 198 DE----EDFEQRRQALRSGPLLQAISAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG-- 267 (312)
T ss_pred Cc----ccccccccccchhHHHHhhhccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--
Confidence 00 0011122233355678899999999998866 55666644447899999999888 8 699999999887
Q ss_pred ceeEEEeCCC-chhhhhhhc
Q psy9976 327 GCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~-~~~~~~~~~ 345 (349)
+|+++|++++ .++++.+.+
T Consensus 268 ptv~~l~~~~~~a~~~~~~l 287 (312)
T PRK02534 268 PTCFALFESQEQAEQALEQV 287 (312)
T ss_pred cceEEEeCCHHHHHHHHHHH
Confidence 9999999874 555555443
No 26
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=8.1e-24 Score=194.87 Aligned_cols=241 Identities=19% Similarity=0.262 Sum_probs=180.3
Q ss_pred cE-EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH-HHHHhcCCCCCce
Q psy9976 21 QW-IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV-SIFNDRVAPVPGF 98 (349)
Q Consensus 21 G~-vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~-~~l~~~~~~~~g~ 98 (349)
|| +|.+ |++++..+++....| ..++...... ....+++ + .|++..++ ..+++.+...+ +
T Consensus 18 GFD~lGl-Al~~~~~~~v~~~~~-~~~i~~~g~~-----~~~iP~~------~-----~n~~~~~~~~~~~~~~~~~~-~ 78 (299)
T COG0083 18 GFDVLGL-ALDLYNDVVVVEVVD-KFEIEVEGEG-----ADKIPLD------P-----ENLVYQAALKFLEALGIEAG-V 78 (299)
T ss_pred Cccceee-eccccCcEEEEEecC-cEEEEEeccc-----ccCCCCC------c-----ceeHHHHHHHHHHHhCCCcc-E
Confidence 55 9999 999987777766554 5555444310 1111211 1 13554444 44455555554 9
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH-HHhccCCeEEEEe-
Q psy9976 99 NAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV-SVMGEEGSALLID- 176 (349)
Q Consensus 99 ~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a-~~~gg~~~~~~~d- 176 (349)
++.++++||.++|||||||.+||.+.+++++++.++ +++++.+++...| |+| |+.+ |++|| +.+..
T Consensus 79 ~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L-~~~~ll~~a~~~E----gHp----DNVapa~lGG---~~l~~~ 146 (299)
T COG0083 79 KIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPL-SKEELLQLALEIE----GHP----DNVAPAVLGG---LVLVEE 146 (299)
T ss_pred EEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHhc----CCC----chHHHHhhCC---EEEEee
Confidence 999999999999999999999999999999999999 9999999999998 588 8888 99999 34333
Q ss_pred cCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHH
Q psy9976 177 CKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGH 256 (349)
Q Consensus 177 ~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~ 256 (349)
-.+.....+|++ ++++++++.|+.+.+|. +++++|.++. + ..
T Consensus 147 ~~~~~~~~v~~~--~~~~~v~~iP~~e~sT~------------~aR~vLP~~~------------------~------~~ 188 (299)
T COG0083 147 ESGIISVKVPFP--SDLKLVVVIPNFEVSTA------------EARKVLPKSY------------------S------RK 188 (299)
T ss_pred cCCceEEEccCC--cceEEEEEeCCccccHH------------HHHHhccccC------------------C------HH
Confidence 245555666765 49999999999988875 5667775321 1 23
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCC
Q psy9976 257 HVVTEIDRTYKGANALKEGDFETFGKLMNE-SHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335 (349)
Q Consensus 257 ~~i~e~~rv~~~~~al~~~d~~~lg~lm~~-s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~ 335 (349)
..+.+.+|+.-++.||.++|++.+...|++ -|+..|. -.-|.++++.+.+.+ .|++|+-+|||| +++++++++
T Consensus 189 daV~n~s~~a~lv~al~~~~~~l~~~~~~D~ihepyR~---~L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~~~ 262 (299)
T COG0083 189 DAVFNLSRAALLVAALLEGDPELLRAMMKDVIHEPYRA---KLVPGYAEVREAALE-AGALGATLSGAG--PTVFALADE 262 (299)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHhccccchhhhh---hhCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEecc
Confidence 456667778999999999997777777764 4455554 256889999999999 799999999998 999999999
Q ss_pred C
Q psy9976 336 L 336 (349)
Q Consensus 336 ~ 336 (349)
.
T Consensus 263 ~ 263 (299)
T COG0083 263 S 263 (299)
T ss_pred c
Confidence 5
No 27
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.93 E-value=1.6e-24 Score=202.93 Aligned_cols=248 Identities=14% Similarity=0.128 Sum_probs=174.7
Q ss_pred hhhceeeeCCcE----EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 11 LKSLMVKKRLQW----IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 11 ~~~~~~~~~~G~----vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
.++..-.+++|| ++++ +||+++++.+++++++.+++.+... .++. + .|++..++.
T Consensus 13 ~l~i~~~r~dGyH~l~sl~~-~i~l~d~v~i~~~~~~~i~~~~~~~----------~~~~-------~---~nlv~~a~~ 71 (293)
T TIGR00154 13 FLYITGKRPDGYHELQTLMQ-FLDLGDKIIISVRSDDDIRLLKGDF----------DVPL-------E---ENLIYRAAQ 71 (293)
T ss_pred EEecCCcCCCCCcceEEEEE-EeccCcEEEEEECCCCcEEEeeCCC----------CCCC-------C---CcHHHHHHH
Confidence 344434458898 9999 9999999999988887788766432 1110 1 179999998
Q ss_pred HHHhcCC----CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy9976 87 IFNDRVA----PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY 162 (349)
Q Consensus 87 ~l~~~~~----~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~ 162 (349)
.+.+... ..+|+++.|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++| . |..
T Consensus 72 ~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l-~~~~l~~la~~lg---------~-Dv~ 140 (293)
T TIGR00154 72 LLKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGL-SLEELAELGLTLG---------A-DVP 140 (293)
T ss_pred HHHHHhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhC---------C-Ccc
Confidence 8876543 35699999999999999999999999999999999999999 9999999999874 2 888
Q ss_pred HHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHH
Q psy9976 163 VSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKH 242 (349)
Q Consensus 163 a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~ 242 (349)
.+++|| ..+....+..+++++.+ +++.+++++|+...+|. ..| +.+.. ....
T Consensus 141 ~~~~gg---~~~~~g~ge~~~~l~~~--~~~~~vl~~p~~~~sT~-~~~-----------~~l~~---~~~~-------- 192 (293)
T TIGR00154 141 FFVSGH---AAFATGVGEIITPFEDP--PEKWVVIAKPHVSISTP-VVY-----------QAYKL---PRNT-------- 192 (293)
T ss_pred eEEECC---eEEEEecCcEEEECCCC--CCcEEEEEcCCCCcChH-HHH-----------Hhhhh---cccC--------
Confidence 899998 45554444445555433 46779999999988764 222 11110 0000
Q ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecc
Q psy9976 243 AQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTG 322 (349)
Q Consensus 243 ~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltG 322 (349)
+ .. ...+..++..+++..+... .|+.++.....++|+++++++.+++ .|+++++|||
T Consensus 193 -----~-~~-------------~~~l~~~~~~~~~~~~~~~---~~ndle~~~~~~~p~l~~i~~~l~~-~Ga~~a~mSG 249 (293)
T TIGR00154 193 -----P-KR-------------AKEWLKKISLECLQLLDSN---GLNDLEKVALKRHTEVAQALNWLLE-YGLAPERLSG 249 (293)
T ss_pred -----c-ch-------------hHHHHHHHhhccHHHHhhh---hcCccHHHHHhcCHHHHHHHHHHHh-CCCCeEEEec
Confidence 0 00 1123334444455444322 2444544323388999999999999 6999999999
Q ss_pred cCccceeEEEeCCCc-hhhhhh
Q psy9976 323 GGFGGCAIALVSPLN-LRRGRK 343 (349)
Q Consensus 323 aG~GG~~i~l~~~~~-~~~~~~ 343 (349)
+| +|+++|++++. ++++.+
T Consensus 250 SG--~tvf~l~~~~~~a~~~~~ 269 (293)
T TIGR00154 250 SG--ACVFALFDMESEAEQVLE 269 (293)
T ss_pred cc--cceEEEeCCHHHHHHHHH
Confidence 96 99999998754 444444
No 28
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.92 E-value=1.8e-23 Score=197.02 Aligned_cols=247 Identities=17% Similarity=0.217 Sum_probs=168.7
Q ss_pred CcE-EEecccccceEEEEEEe----cCCC-eEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhc-C
Q psy9976 20 LQW-IIMMDVRQVVTVLLGSR----NNSN-QIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR-V 92 (349)
Q Consensus 20 ~G~-vl~~~Ai~~~~~v~~~~----~~d~-~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~-~ 92 (349)
-|| +|.+ |++.|..+.+.. .... .+++..... . .++ ..+ -.|++..++..+.+. +
T Consensus 14 ~GfD~lg~-al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~p----~~~----~~Nlv~~a~~~~~~~~g 75 (302)
T TIGR00191 14 PGFDVLGA-ALSLYLGLTVTDVVAQESDDTEIEAEGEGV-----E----KIP----TEP----TDNLIYQVAKRFLDQLG 75 (302)
T ss_pred cChhhhhh-hccccceEEEEeeecccCCCceEEEEeccc-----c----cCC----CCc----ccccHHHHHHHHHHHcC
Confidence 355 8999 999998777764 2221 233332110 0 111 000 126887777766554 4
Q ss_pred CCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHH-HHHHhccCCe
Q psy9976 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQ-YVSVMGEEGS 171 (349)
Q Consensus 93 ~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~-~a~~~gg~~~ 171 (349)
.+.+|++|.|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++|. +| |+ .+++|||
T Consensus 76 ~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l-~~~el~~~a~~~E~----h~----Dnv~~~l~GG--- 143 (302)
T TIGR00191 76 IRMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPL-SKERLLDYASELEG----HP----DNVAPALLGG--- 143 (302)
T ss_pred CCCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhcC----Cc----ccHHHHhccC---
Confidence 333699999999999999999999999999999999999999 99999999999985 23 74 5688998
Q ss_pred EEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHH
Q psy9976 172 ALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251 (349)
Q Consensus 172 ~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 251 (349)
+++....+..+.+++++..+++.+++++|+.+.+|. ++.+.+... + +.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~------------~a~~~lp~~----~--------------~~-- 191 (302)
T TIGR00191 144 FQLAFVEDDKLEVLKIPIFSKLDWVLAIPNIEVSTA------------EARAVLPKA----Y--------------PR-- 191 (302)
T ss_pred EEEEEEcCCceEEEEeCCCCCEEEEEEECCCcccHH------------HHHHhCccc----C--------------CH--
Confidence 555544444455655542147899999999887764 222333210 0 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcccee
Q psy9976 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNES--HDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCA 329 (349)
Q Consensus 252 ~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s--~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~ 329 (349)
.+.+.+..|...+..+|.+++++ +++.+..+ |+..+ ...+|+++.+++.+++ .|++|++|||+| +|+
T Consensus 192 ----~~~v~~~~~~~~l~~al~~~~~~-l~~~~~~d~l~e~~~---~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv 260 (302)
T TIGR00191 192 ----QDLVFNLSHLAGLVHAIYQKKPD-LGAIMMKDRIHQPYR---ESLIPNLFKIKQAALE-KGAYGITISGSG--PTI 260 (302)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCHH-HHHHHcccccchhhH---hhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhh
Confidence 11122233455567888888764 56665544 23333 3468999999999999 699999999998 999
Q ss_pred EEEeCCCchh
Q psy9976 330 IALVSPLNLR 339 (349)
Q Consensus 330 i~l~~~~~~~ 339 (349)
++|++++...
T Consensus 261 ~al~~~~~~~ 270 (302)
T TIGR00191 261 LAMADEEFAE 270 (302)
T ss_pred eEEecchhhH
Confidence 9999876543
No 29
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=4.5e-23 Score=194.18 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 79 ~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
|.+..+++.+.+.....+|++|+|.|+||+++|||||||.++|++.+++++++.++ ++++++++|.++|
T Consensus 65 nl~~~~~~~~~~~~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~l-s~~el~~~a~~ig---------- 133 (300)
T PRK03188 65 NLAWRAAELLAEHVGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGL-SRDELLELAAELG---------- 133 (300)
T ss_pred cHHHHHHHHHHHHhCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhC----------
Confidence 67777777765543334689999999999999999999999999999999999999 9999999999874
Q ss_pred hHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHH
Q psy9976 159 MDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSL 238 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~ 238 (349)
.|..++++|| .++.+..+..+.+++.+ +++.++++.++...+|. ..|+ .+.. ++..
T Consensus 134 ~dv~~~~~GG---~~~~~~~g~~~~~~~~~--~~~~~~lv~p~~~~sT~-~~~~-----------~l~~--~~~~----- 189 (300)
T PRK03188 134 SDVPFALLGG---TALGTGRGEQLAPVLAR--GTFHWVLAFADGGLSTP-AVFR-----------ELDR--LREA----- 189 (300)
T ss_pred CCcchhhcCC---eEEEEecCCEEEECCCC--CCcEEEEEeCCCCCCHH-HHHH-----------hchh--hhcc-----
Confidence 2888899998 55555444445555443 35566666666555442 2222 1110 0000
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCC-CChhHHHHHHHHHcCCCCeE
Q psy9976 239 EDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEV-SCKELDDIAHCAQSLPGVLG 317 (349)
Q Consensus 239 ~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~v-s~p~ld~l~~~a~~~~Ga~g 317 (349)
..+....++..+..++.++|++.+++.|.. .++. +.+ .+|+++++++.+++ .|++|
T Consensus 190 ------------------~~~~~~~~~~~~~~al~~~d~~~l~~~~~n---~le~-~~~~~~p~l~~l~~~~~~-~Galg 246 (300)
T PRK03188 190 ------------------GDPPRLGEPDPLLAALRAGDPAQLAPLLGN---DLQA-AALSLRPSLRRTLRAGEE-AGALA 246 (300)
T ss_pred ------------------ccccccccHHHHHHHHHcCCHHHHHHHhhC---cCHH-HHHHhCchHHHHHHHHHH-CCCCE
Confidence 000011125778899999999999999853 2332 434 49999999999999 69999
Q ss_pred EEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 318 CRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 318 akltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
++|||+| +++++|+++ +.++++.+.+
T Consensus 247 a~lSGsG--~tv~~l~~~~~~~~~~~~~l 273 (300)
T PRK03188 247 GIVSGSG--PTCAFLCADADSAVDVAAAL 273 (300)
T ss_pred EEEEccc--cceEEEeCCHHHHHHHHHHH
Confidence 9999987 678899986 4455665544
No 30
>PRK01123 shikimate kinase; Provisional
Probab=99.91 E-value=3.6e-22 Score=186.32 Aligned_cols=236 Identities=15% Similarity=0.100 Sum_probs=158.2
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVP 107 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP 107 (349)
+||++..+.+++.++. +.+.... . .++ . .. .|++..++..+.+......||++++.++||
T Consensus 26 ~i~l~~~v~v~~~~~~-~~~~~~~------~----~~~------~--~~-~~~v~~~~~~~~~~~~~~~~~~i~i~s~IP 85 (282)
T PRK01123 26 GIDLKTTATVELSDDG-GGIEGEI------S----GNP------D--AD-TRLIERCVELVLERFGIDYGATVRTKSEIP 85 (282)
T ss_pred EeccEEEEEEEECCCC-ceeeecc------c----CCC------C--CC-chHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 7889999998776553 2222110 0 011 0 11 267777777665543223599999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCC-CChhhHHHHHHhccCCeEEEEecCCCe-eEEe
Q psy9976 108 MGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGV-PCGIMDQYVSVMGEEGSALLIDCKTHE-ARHI 185 (349)
Q Consensus 108 ~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~-~~G~~D~~a~~~gg~~~~~~~d~~~~~-~~~l 185 (349)
+++|||||||+++|++.+++++++.++ ++++++++|.++|+...+. .++.+|+++++||| +++.+..+.. +..
T Consensus 86 ~~~GLGSSaA~~va~~~a~~~~~~~~l-~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG---~~~~~~~~~~~~~~- 160 (282)
T PRK01123 86 LASGLKSSSAAANATVLATLDALGEDL-DDLDILRLGVKASRDAGVTVTGAFDDACASYFGG---VTVTDNREMKLLKR- 160 (282)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhhccccccccCchhHHHHHHhCC---EEEEcCCCceEEEE-
Confidence 999999999999999999999999999 9999999999999987664 35667899999999 5666543322 223
Q ss_pred eCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q psy9976 186 PLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRT 265 (349)
Q Consensus 186 ~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv 265 (349)
.+. ++.++++.|+.+.+|... |+ .++.. . . .++
T Consensus 161 -~~~--~~~~vv~~p~~~~~T~~~----r~-------~~l~~-------------~------~--------------~~~ 193 (282)
T PRK01123 161 -DEV--ELDVLVLIPPEGAFSASA----DV-------ERMKL-------------I------A--------------PYV 193 (282)
T ss_pred -ecC--CcEEEEEECCCCcchhhh----hh-------hhchh-------------c------C--------------cHH
Confidence 332 578999999987766421 10 00110 0 0 002
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 266 YKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 266 ~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
.++.++++.+|+. ++|+.++...|...++++ .++..+++ .|++|+++||+ |||+++|++.+..+++.+.+
T Consensus 194 d~~~~~~~~~~l~---~~~~~~~l~~~~~l~~~~----~~i~~a~~-~Ga~ga~lSGa--Gptv~al~~~~~~~~v~~~l 263 (282)
T PRK01123 194 DMAFELALDGEYF---KAMTLNGLLYSSALGFPT----EPALEALE-AGAVGVGLSGT--GPSYVAIVDEEDPEEVKEAW 263 (282)
T ss_pred HHHHHHHhhccHH---HHHHhCCchhhhhhCCCh----HHHHHHHH-CCCeEEEEecC--CCeEEEEeCCCCHHHHHHHH
Confidence 2333344556765 566665444444455554 33555778 69999999986 49999999887777665553
No 31
>PTZ00299 homoserine kinase; Provisional
Probab=99.89 E-value=1.1e-21 Score=185.88 Aligned_cols=238 Identities=17% Similarity=0.209 Sum_probs=165.6
Q ss_pred cE-EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHH-HhcCC-CCCc
Q psy9976 21 QW-IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF-NDRVA-PVPG 97 (349)
Q Consensus 21 G~-vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l-~~~~~-~~~g 97 (349)
|| +|.+ |++++..+.+++.+...+++..... . .++. .-.|.+..++..+ .+.+. ..+|
T Consensus 22 GFDsLGl-AL~lyd~v~v~~~~~~~i~i~G~~~-----~----~lp~---------~~~nlv~~a~~~~~~~~~~~~~~g 82 (336)
T PTZ00299 22 AYDTLGM-ALSIFMELTVEHADAFSMTVEGEGS-----E----HIST---------DEDNMVVQACRLAFEEYAHKSMPP 82 (336)
T ss_pred cHHHHhh-hcccCcEEEEEECCCCEEEEecCCc-----C----CCCC---------CcchHHHHHHHHHHHHhcCCCCCc
Confidence 45 8889 9999999998875543454432110 0 1111 0125665555544 33333 2358
Q ss_pred eEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHhhcCCCChhhH-HHHHHhccCCeEE
Q psy9976 98 FNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLK---LTDKALACQEAEHSFAGVPCGIMD-QYVSVMGEEGSAL 173 (349)
Q Consensus 98 ~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~---~~~l~~~a~~~E~~~~G~~~G~~D-~~a~~~gg~~~~~ 173 (349)
+++.|.++||+++|||||||.+||.+.+++++++.++ + ++++.+++.++| |+| | ...+++|| +.
T Consensus 83 ~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l-~~~~~~el~~~A~~~E----GHp----DNVapal~GG---~~ 150 (336)
T PTZ00299 83 LKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTM-ETENEEALLQAIAKFE----GHP----DNAAPAIYGG---IQ 150 (336)
T ss_pred eEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCC-CccCHHHHHHHHHhhc----CCc----ccHHHHHhCC---EE
Confidence 9999999999999999999999999999999999988 5 789999999988 566 9 45599999 44
Q ss_pred EEe-cCCCe--eEEeeCCCCCCeEEEEEeCCCCc--ccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 174 LID-CKTHE--ARHIPLGDDHQYVFLIINSNVHH--ELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 174 ~~d-~~~~~--~~~l~~~~~~~~~~ll~~s~~~~--~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
+.. ....+ ..+++.+ +++.++++.|+... +| . .++++|.++ + +
T Consensus 151 ~~~~~~~ge~~~~~i~~~--~~~~~vv~iP~~~~~~sT--~----------~aR~vLP~~----v--------------~ 198 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTP--PNLSVVLFVPHNKMKANT--H----------VTRNLIPTS----V--------------S 198 (336)
T ss_pred EEEecCCCceEEEecCCC--CCeEEEEEECCCCccccH--H----------HHHhhCccc----C--------------c
Confidence 333 22223 3345544 48899999998743 44 2 233444311 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccC--CCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYE--VSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 249 ~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~--vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
..+.+.+..|+..++.+|.++|++.+..+.+.-|+ .|. -..|+++.+.+.+.+ .|++|+-|||||
T Consensus 199 ------~~dav~n~~~~~~lv~al~~~d~~ll~~~~D~lhe----p~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSG-- 265 (336)
T PTZ00299 199 ------LEDAVFNISRTSILVLALSTGDLRMLKSCSDKLHE----QQRSDALFPHFRPCVKAARE-AGAHYAFLSGAG-- 265 (336)
T ss_pred ------HHHHHHhhhHHHHHHHHHHhCCHHHHHhchhcccC----cccccccCccHHHHHHHHHH-CCCeEEEEEchh--
Confidence 12344455666778999999999998653222333 343 358999999999999 699999999998
Q ss_pred ceeEEEeC
Q psy9976 327 GCAIALVS 334 (349)
Q Consensus 327 G~~i~l~~ 334 (349)
.++++|++
T Consensus 266 PTv~al~~ 273 (336)
T PTZ00299 266 PSVCALVG 273 (336)
T ss_pred hhheEEec
Confidence 99999998
No 32
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=5.6e-22 Score=183.48 Aligned_cols=244 Identities=12% Similarity=0.145 Sum_probs=160.5
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc--cC--C---CCCcCHhHHHHHHHHHHHhcCCCCCceEE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ--KL--T---PGAPKWANYVKGVVSIFNDRVAPVPGFNA 100 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~--~l--~---~~~~~w~~~v~~~~~~l~~~~~~~~g~~i 100 (349)
-||++..|.. +|+|+.+.|.|....++-.+.+++...+.. .+ . .....|.|++..++..+.+... ..|++|
T Consensus 8 KiNL~L~v~~-~r~dGyH~l~s~~~~i~l~D~l~i~~~~~~~~~~~~~~~~~~~~~~~Nlv~~a~~~~~~~~~-~~~~~i 85 (269)
T PRK14609 8 KINLGLNVVE-KRPDGYHNLETVFYPIPLTDALEITVRSATKTSLTVSGIPIPGDPEDNLVVKAYNLLKKDFP-LPPVHI 85 (269)
T ss_pred cEEeeeccCC-cCCCCcceeeEEEEECCCCcEEEEEEcCCCcEEEEeCCCCCCCCccccHHHHHHHHHHHHcC-CCCeEE
Confidence 6666666663 566677666666443433444444321100 00 0 0113467999998888876544 468999
Q ss_pred EEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCC
Q psy9976 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH 180 (349)
Q Consensus 101 ~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~ 180 (349)
.+.++||+++|||||||.++|++.+++++++.++ +.+++.++|.++ |. |...+++|+ ..+....+.
T Consensus 86 ~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l-~~~~l~~la~~i---------Ga-Dvpffl~g~---~a~~~G~Ge 151 (269)
T PRK14609 86 HLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGL-SDEELEAYAATL---------GA-DCAFFIRNK---PVYATGIGD 151 (269)
T ss_pred EEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHh---------CC-CceEEccCC---CEEEEEeCC
Confidence 9999999999999999999999999999999999 999999999976 33 888888886 344444455
Q ss_pred eeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy9976 181 EARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVT 260 (349)
Q Consensus 181 ~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~ 260 (349)
.+++++.+. +++.+++++|++..+|. ..| +.+... . +... ....+.
T Consensus 152 ~l~~l~~~~-~~~~~vlv~P~~~~sT~-~a~-----------~~l~~~----~--------------~~~~---~~~~~~ 197 (269)
T PRK14609 152 IFSPIDLSL-SGYYIALVKPDIHVSTA-EAY-----------AGIKPH----K--------------PETS---LKEIIR 197 (269)
T ss_pred eeEECCCCC-CCCEEEEECCCCCCChH-HHH-----------Hhhhhc----C--------------cchh---hHHHHh
Confidence 567765443 57789999999988774 222 222100 0 0000 000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCC-Cchh
Q psy9976 261 EIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP-LNLR 339 (349)
Q Consensus 261 e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~-~~~~ 339 (349)
.+... +++.-|+.++......+|+++.+.+.+++ .|+++++||||| +|+++++++ +..+
T Consensus 198 --------------~~~~~---~~~~l~Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~~~~~~ 257 (269)
T PRK14609 198 --------------QPVEE---WKNKLVNDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKKPPNLD 257 (269)
T ss_pred --------------hHHHH---HHhhcCCChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECChHHcC
Confidence 00001 11112344444445578999999999999 699999999997 999999975 4455
Q ss_pred hh
Q psy9976 340 RG 341 (349)
Q Consensus 340 ~~ 341 (349)
+|
T Consensus 258 ~~ 259 (269)
T PRK14609 258 EF 259 (269)
T ss_pred cc
Confidence 54
No 33
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.89 E-value=3e-22 Score=187.40 Aligned_cols=250 Identities=16% Similarity=0.126 Sum_probs=162.6
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCc-c-cCC---C--CCcCHhHHHHHHHHHHHhcCC-CCCceE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKV-Q-KLT---P--GAPKWANYVKGVVSIFNDRVA-PVPGFN 99 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~-~-~l~---~--~~~~w~~~v~~~~~~l~~~~~-~~~g~~ 99 (349)
-||++..|.. +|+|+.+.|.|....++-.+.+++...+. . .+. . -...+.|++..++..+.+... ..+|++
T Consensus 14 KiNL~L~i~~-kr~dGyH~l~s~~~~i~l~D~l~i~~~~~~~i~~~~~~~~~ip~~~~Nlv~ka~~~~~~~~g~~~~~~~ 92 (290)
T PRK14608 14 KINLALHVTG-RRADGYHLLESLVAFADVGDRLTLEPAEALSLTVSGPFAAGLGDGDDNLVLRAARALRARVGPGLPPGA 92 (290)
T ss_pred eEEeeeccCC-CCCCCCcceeEEEEECCCCcEEEEEECCCCcEEEeCCCccCCCCCCCcHHHHHHHHHHHHhCCCCCceE
Confidence 6777766663 56777777777654343344554432111 0 000 0 012357999888888876542 456999
Q ss_pred EEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCC
Q psy9976 100 AVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKT 179 (349)
Q Consensus 100 i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~ 179 (349)
++|.++||+++|||||||.+||++.+++++++.++ ++++++++|.++| . |..++++|| ..+....+
T Consensus 93 i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~l-s~~el~~la~~ig---------~-dv~~~l~gg---~~~~~g~g 158 (290)
T PRK14608 93 FHLEKNLPVAAGIGGGSADAAAALRLLARLWGLAL-DDERLAALALSLG---------A-DVPVCLDSR---PLIMRGIG 158 (290)
T ss_pred EEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhC---------C-CcchhhcCC---eEEEEecC
Confidence 99999999999999999999999999999999999 9999999999874 2 889999998 44444444
Q ss_pred CeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHH
Q psy9976 180 HEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV 259 (349)
Q Consensus 180 ~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i 259 (349)
..+++++.+ +++.++|++|+.+.+|. ..| +.+... ...+.. ..+
T Consensus 159 ~~~~~l~~~--~~~~~vv~~p~~~~sT~-~~~-----------~~l~~~--~~~~~~--------------------~~~ 202 (290)
T PRK14608 159 EELTPLPGL--PSLPAVLVNPGVPVATP-DVF-----------RALGLR--DGPPLP--------------------GAP 202 (290)
T ss_pred CEeEECCCC--CCcEEEEECCCCCcChH-HHH-----------Hhhccc--cCCcch--------------------hhh
Confidence 456666532 57789999999988864 222 222110 000000 000
Q ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCC-CCeEEEecccCccceeEEEeCCC
Q psy9976 260 TEIDRTYKGANALK--EGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLP-GVLGCRMTGGGFGGCAIALVSPL 336 (349)
Q Consensus 260 ~e~~rv~~~~~al~--~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~-Ga~gakltGaG~GG~~i~l~~~~ 336 (349)
....+...+..++. .+|++... --.+|+++.+.+.+++ . |++|++||||| +++++|++++
T Consensus 203 ~~~~~~~~l~~~~~~~~ndle~~~--------------~~l~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~ 265 (290)
T PRK14608 203 DPLASADALLAALAATRNDLEPPA--------------LALAPVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADE 265 (290)
T ss_pred hhhhhhhhHHHHHHhccCccHHHH--------------HHcCcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCH
Confidence 01111222222222 12332211 1258999999999999 8 99999999998 9999999864
Q ss_pred -chhhhhhhc
Q psy9976 337 -NLRRGRKKK 345 (349)
Q Consensus 337 -~~~~~~~~~ 345 (349)
.++++.+.+
T Consensus 266 ~~a~~~~~~l 275 (290)
T PRK14608 266 AAAEAAAAAI 275 (290)
T ss_pred HHHHHHHHHh
Confidence 355555443
No 34
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.88 E-value=2e-21 Score=180.64 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=143.7
Q ss_pred HhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCC
Q psy9976 77 WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPC 156 (349)
Q Consensus 77 w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~ 156 (349)
+.|++..++..+.+......|++|++.++||+++|||||||.+||++.+++++++.++ +.+++.++|.++|.
T Consensus 60 ~~n~v~~a~~~~~~~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l-~~~~l~~la~~i~~------- 131 (275)
T PRK14611 60 EENIVYKALRLFERYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPL-SEEELFELASSISA------- 131 (275)
T ss_pred cccHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhCC-------
Confidence 5689999998887654334699999999999999999999999999999999999999 99999999998863
Q ss_pred hhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 157 GIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 157 G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
|...+++|| .++.+..+..+.+++.+ ++..+++++|+.+.+|. ..| +.+...
T Consensus 132 ---D~~~~~~Gg---~~~~~~~g~~~~~~~~~--~~~~~vv~~p~~~~sT~-~~~-----------~~l~~~-------- 183 (275)
T PRK14611 132 ---DAPFFLKGG---FALGRGIGDKLEFLEKP--ISREITLVYPNIKSSTG-RVY-----------SKVTKQ-------- 183 (275)
T ss_pred ---CCCeeecCC---eEEEeccCceeEECCcC--CCcEEEEEeCCCCCChH-HHH-----------Hhcchh--------
Confidence 766677887 55555544445555433 35578999999988764 222 112100
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
......+...+.+++.++|+..++..+. +.+.+.+.-..|++..+.+...+ .| +
T Consensus 184 ---------------------~~~~~~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P~l~~~~~~l~~-~~-~ 237 (275)
T PRK14611 184 ---------------------ILTNKEDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYPEIKEVYRFLEY-LG-Y 237 (275)
T ss_pred ---------------------hccCcchHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCHHHHHHHHHHHh-CC-C
Confidence 0011122455677888999988876542 33444444578999999988766 46 5
Q ss_pred EEEecccCccceeEEEeCC
Q psy9976 317 GCRMTGGGFGGCAIALVSP 335 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~ 335 (349)
++.|||+| .++++++++
T Consensus 238 ~~~~SGSG--~tvf~l~~~ 254 (275)
T PRK14611 238 KPFVSGSG--SSVYVFGKP 254 (275)
T ss_pred CEEEeCcc--ccceeEeCC
Confidence 89999998 999999965
No 35
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=6.7e-21 Score=178.74 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=159.8
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCC-CCceEEeCCCc-c-cCC---CCCcCHhHHHHHHHHHHHhcCCCCCceEEE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADK-PTDISFDIPKV-Q-KLT---PGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~-~~~~~~~l~~~-~-~l~---~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~ 101 (349)
-||++..|.. +|+|+++.|.+....++. .+.+++...+. . .+. ...+.-.|.+..++..+.+.....+|++|+
T Consensus 14 KINL~L~v~~-kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~~~~~~~~~~Nlv~~a~~~~~~~~~~~~~~~i~ 92 (296)
T PRK14615 14 KVNLDLRITG-VRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTCTIPDLDPERNTVTRAYTAFAAATGFRPPLEVH 92 (296)
T ss_pred eEEeccccCC-cCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEECCCCCCCCccHHHHHHHHHHHHhCCCCCeEEE
Confidence 6666666553 456666666666433331 33444432110 0 000 000111578877777776543333699999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCe
Q psy9976 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHE 181 (349)
Q Consensus 102 i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~ 181 (349)
|.++||+++|||||||.++|++.+++++++.++ +.+++++++.++|. |...+.+|| ..+.......
T Consensus 93 i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l-~~~~l~~~a~~~ga----------DvPffl~gg---~a~~~G~Ge~ 158 (296)
T PRK14615 93 LRKGIPHGAGLGGGSADAAALLRHLNSIAPHPL-SPEALAKLAAGVGA----------DVPFFLHNV---PCRATGIGEI 158 (296)
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCC----------CCeeeccCC---CEEEEeeEeE
Confidence 999999999999999999999999999999999 99999999998754 666666676 3444444455
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhc-cCCCCHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy9976 182 ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVS-FRDVSLKSLEDKHAQKLLSDEEYKRGHHVVT 260 (349)
Q Consensus 182 ~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~-l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~ 260 (349)
+++++++. +++.++|++|+++.+|. ..| +.+.... +.... ..+
T Consensus 159 ~~~l~~~~-~~~~~vl~~P~~~vsT~-~a~-----------~~~~~~~~~~~~~------------~~~----------- 202 (296)
T PRK14615 159 LTPVALGL-SGWTLVLVCPEVQVSTP-WAY-----------AAWDAANAKQIAA------------SSR----------- 202 (296)
T ss_pred EEECCCCC-CCcEEEEECCCCCcChH-HHH-----------HHhhhhccccccc------------ccc-----------
Confidence 66766544 57789999999988774 223 2221100 00000 000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCC-Cchh
Q psy9976 261 EIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP-LNLR 339 (349)
Q Consensus 261 e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~-~~~~ 339 (349)
...+...+......+|...+++... .++.++...--..|+++.+.+.+++ .|++|++|||+| +|+++|+++ +.++
T Consensus 203 ~~~~~~~~l~~~~~~~~~~~~~~~~-l~ndle~~~~~l~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~ 278 (296)
T PRK14615 203 KQNRLRGCLTTEGVADRNPLSRGLW-LHNSFEPVVFAAHPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAE 278 (296)
T ss_pred cccchHHHHHhhhccchhhhhhhhh-ccccchhHhHHhChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHH
Confidence 0000111222333334333222110 0111222111378999999999999 699999999998 999999876 4456
Q ss_pred hhhhhc
Q psy9976 340 RGRKKK 345 (349)
Q Consensus 340 ~~~~~~ 345 (349)
++.+++
T Consensus 279 ~i~~~l 284 (296)
T PRK14615 279 AAFEML 284 (296)
T ss_pred HHHHHH
Confidence 666554
No 36
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=6.8e-21 Score=177.53 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 79 ~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
|.+..++..+.+.....+|+++.|.++||+++|||||||.++|++.+++++++.++ +++++.++|..+ |.
T Consensus 67 nl~~~a~~~~~~~~~~~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l-~~~~l~~~a~~~---------G~ 136 (280)
T PRK14614 67 NIAWRAADALLDLSGREVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGL-SDERLMEIGVKL---------GA 136 (280)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHh---------CC
Confidence 67766666665543334589999999999999999999999999999999999999 999999998865 33
Q ss_pred hHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHH
Q psy9976 159 MDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSL 238 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~ 238 (349)
|..++++|| ..+....+..+++++.+ +++.+++++|+...+|. ..|.. +... ++..
T Consensus 137 -Dv~~~l~gg---~~~~~g~ge~~~~l~~~--~~~~ivl~~p~~~~sT~-~~~~~-----------~~~~--~~~~---- 192 (280)
T PRK14614 137 -DVPFFIFKK---TALAEGIGDKLTAVEGV--PPLWVVLVNPGLHVSTA-WVYQN-----------LRLT--SRKD---- 192 (280)
T ss_pred -CcceeeeCC---cEEEEEcCceeEECCCC--CCcEEEEECCCCCCCHH-HHHhc-----------cccc--ccCc----
Confidence 888888987 44444344455665543 46789999999988764 22211 1000 0000
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEE
Q psy9976 239 EDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGC 318 (349)
Q Consensus 239 ~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ga 318 (349)
....... +.. . ....++..+|++.+. + -..|+++.+++.+++ .|++|+
T Consensus 193 ----------~~~~~~~---~~~---~-~~~~~~~~ndle~~~--~------------~~~p~l~~i~~~~~~-~Galga 240 (280)
T PRK14614 193 ----------LAIIPRF---FGS---V-AEVCALLSNDLESVT--I------------GRFPVIGEIKEELLA-AGARGS 240 (280)
T ss_pred ----------chhhhhh---hhh---H-HHHhhhcccCcHHHH--H------------hcChHHHHHHHHHHh-CCCCEE
Confidence 0000000 000 1 111244557776552 0 037999999999999 699999
Q ss_pred EecccCccceeEEEeCCCc-hhhhhhh
Q psy9976 319 RMTGGGFGGCAIALVSPLN-LRRGRKK 344 (349)
Q Consensus 319 kltGaG~GG~~i~l~~~~~-~~~~~~~ 344 (349)
+|||+| ||+++|++++. ++++.+.
T Consensus 241 ~lSGSG--~tv~~l~~~~~~~~~~~~~ 265 (280)
T PRK14614 241 LMSGSG--STVFGLFDDEAAARAAAEE 265 (280)
T ss_pred EEeccc--cceEEEeCCHHHHHHHHHH
Confidence 999997 99999998765 4555443
No 37
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=7.1e-21 Score=178.09 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.|++..++..+.+......|++|.|.++||+++|||||||.++|++.+++++++.++ +.++++++|.++|.
T Consensus 64 ~nl~~~a~~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~l-s~~el~~~a~~ig~-------- 134 (287)
T PRK14616 64 SNLCIRAAKALQEYAGVSKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINA-PSADLHRLAVKLGA-------- 134 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC--------
Confidence 477777777665543335699999999999999999999999999999999999999 99999999999864
Q ss_pred hhHHHHHH-hccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 158 IMDQYVSV-MGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 158 ~~D~~a~~-~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
|..+++ +|| +.+.......+++++.+. .+.+++++|+...+|. .+.+.+.++...
T Consensus 135 --Dvp~~l~~gg---~~~~~g~g~~~~~~~~~~--~~~~vvv~P~~~vsT~------------~a~~~l~~~~~~----- 190 (287)
T PRK14616 135 --DVPYFLEMKG---LAYATGIGDELEDLQLTL--PFHIVTVFPEEHISTV------------WAYKNFYRRFER----- 190 (287)
T ss_pred --CcceEeccCC---cEEEEEcCceeEECCcCC--CcEEEEECCCCCcCHH------------HHHHHhhhhccc-----
Confidence 644444 355 333333344455554443 4779999999988774 222333211000
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKE-GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~-~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga 315 (349)
...++..++.++.. +|++.++.++|.- +..+. -..|+++.+.+.+++ .|+
T Consensus 191 ------------------------~~~~~~~l~~~l~~~~~~~l~~~~~nD~-e~~~~---~l~p~l~~v~~~~~~-~Ga 241 (287)
T PRK14616 191 ------------------------ERPDLKTLVRRLCLDGDTSVLPAFENDF-ESAVF---DHYPAVRKVKDDLLE-AGS 241 (287)
T ss_pred ------------------------CCchHHHHHHHHhcCCHHHHHHHhcCcc-HHHHH---HhChHHHHHHHHHHh-CCC
Confidence 01112333444433 5666665544422 11221 247999999999999 699
Q ss_pred eEEEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 316 LGCRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
+|+.|||+| .|+++|+++ +.++++.+.+
T Consensus 242 lg~~lSGSG--ptv~al~~~~~~a~~i~~~l 270 (287)
T PRK14616 242 FFASLSGSG--SAVFGLFENEADAEAAAEMM 270 (287)
T ss_pred CeEEEeccc--ccceEEeCCHHHHHHHHHHh
Confidence 999999998 899999987 5566666554
No 38
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=1.3e-20 Score=176.84 Aligned_cols=208 Identities=13% Similarity=0.072 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.|++..++..+.+......|++|+|.++||+++|||||||..++++.+++..+++. ..+++.+++.++|
T Consensus 74 ~Nlv~ka~~~~~~~~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l~--~~e~L~~lA~~lG--------- 142 (297)
T PRK14613 74 QNILYKTFIKARSLFPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNFF--TSDEMQVFAKEIG--------- 142 (297)
T ss_pred cchHHHHHHHHHHHhCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHhC---------
Confidence 58998888887665444469999999999999999999999988888888766542 3577777988873
Q ss_pred hhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHH
Q psy9976 158 IMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKS 237 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~ 237 (349)
. |..+++.|+ ..+.+..+..+++++++ +.+ ++++.|++..+|. . +.+.+......
T Consensus 143 a-DvP~~l~G~---~a~~~g~Ge~~~~l~~~--~~~-~vlv~P~~~vsT~-~-----------a~~~l~~~~~~------ 197 (297)
T PRK14613 143 S-DVPFFLGEG---HAFVTGKGEIMEEIEVH--KGQ-GILALTPQVMNTG-E-----------MYALLKKPLQE------ 197 (297)
T ss_pred C-ccchhhcCC---eEEEecCCcEEEEcCCC--CCe-EEEEECCCCcChH-H-----------HHHhcchhhcc------
Confidence 2 866676665 45555555556666544 344 4677899888764 2 22333211000
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 238 LEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLM-NESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 238 ~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm-~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
+. ...++. .+...+..++.++|++.+...| |.-+. .+ .--.|+++.+.+.+++ .|++
T Consensus 198 ----------~~-----~~~~~~--~~~~~~~~al~~~~~~~l~~~l~ndle~-~~---~~l~P~~~~i~~~~~~-~Ga~ 255 (297)
T PRK14613 198 ----------SA-----SQKNGN--TLSEDLISSLKVGDWVSLQGRLENDFEP-VA---FQLHPELGVLKDKFLE-FGSS 255 (297)
T ss_pred ----------cc-----cccccc--ccHHHHHHHHHcCCHHHHHHHhcccchH-HH---HHhCcHHHHHHHHHHH-cCCC
Confidence 00 000111 1245677888999999875543 44322 11 1248999999999999 6999
Q ss_pred EEEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 317 GCRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
+++||||| +|+++++++ +.++++.+.+
T Consensus 256 ~~~mSGSG--ptvf~l~~~~~~a~~~~~~l 283 (297)
T PRK14613 256 YCSLTGSG--SSMYGLVQGLEIQEELLPRL 283 (297)
T ss_pred EEEEEccc--cceEEEeCCHHHHHHHHHHH
Confidence 99999996 999999987 5555555443
No 39
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=2.5e-20 Score=173.46 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=154.4
Q ss_pred eCCcE----EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 18 KRLQW----IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 18 ~~~G~----vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
+.+|| .|.. +||++..+.+.+.++ .+++..... .++. ...|.+..++..+.+...
T Consensus 21 ~~dgyH~l~sl~~-al~l~d~v~i~~~~~-~~~i~~~~~----------~~p~---------~~~Nli~ka~~~~~~~~g 79 (276)
T PRK14612 21 REDGYHELHTLMV-PLDVGDRLEVEPIAS-GLELRVLGA----------DLPT---------DERNLVYRAARAYLDAAG 79 (276)
T ss_pred CCCCCceeEEEEE-ECCCCCEEEEEECCC-cEEEEcCCC----------CCCC---------CCcccHHHHHHHHHHHhC
Confidence 34554 6667 888888888766543 344432110 1110 123677767666655432
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
..+|++|+|.++||+++|||||||.+||++.+++++++.++ + +.+++..+| . |.+.+++|| ..
T Consensus 80 ~~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l-~---l~~ia~~~g---------~-dv~~~~~GG---~~ 142 (276)
T PRK14612 80 QPGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPV-D---LPALALTLG---------A-DVPFFLLGG---AA 142 (276)
T ss_pred CCCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCCh-H---HHHHHHHhC---------C-CcCeeeeCC---eE
Confidence 34589999999999999999999999999999999999776 5 445555442 2 888899998 44
Q ss_pred EEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHH
Q psy9976 174 LIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253 (349)
Q Consensus 174 ~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 253 (349)
+....+..+++++ . +++.++|+.|+++.+|. . +.+.+..+ .+ +.
T Consensus 143 ~~~g~g~~~~~l~--~-~~~~~vv~~P~~~~sT~-~-----------a~~~l~~~---~~--------------~~---- 186 (276)
T PRK14612 143 EARGVGERLTPLE--L-PPVPLVLVNPGVAVSAR-D-----------AYRWLEPE---DF--------------GP---- 186 (276)
T ss_pred EEEecCccceEcC--C-CCcEEEEECCCCCCCHH-H-----------HHHhhccc---cC--------------CC----
Confidence 4443344455554 2 47789999999988764 2 22222100 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 254 RGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 254 r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
..|+..+..+|.++|...+.+ .++......+|+++.+++.+++ .|++|++|||+| +|+++|+
T Consensus 187 --------~~~~~~l~~~l~~~d~~~~~n-------~l~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~ 248 (276)
T PRK14612 187 --------ELDVEAILAALARGEEPPYWN-------SLEGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLA 248 (276)
T ss_pred --------cccHHHHHHHHHhcccccccC-------CcHHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEe
Confidence 012455666777777433221 2333334588999999999999 699999999998 8999999
Q ss_pred CCCc-hhhhhhhc
Q psy9976 334 SPLN-LRRGRKKK 345 (349)
Q Consensus 334 ~~~~-~~~~~~~~ 345 (349)
+++. ++++.+.+
T Consensus 249 ~~~~~a~~~~~~l 261 (276)
T PRK14612 249 EDAAQAQRAAAAL 261 (276)
T ss_pred CCHHHHHHHHHHh
Confidence 8643 55555543
No 40
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.83 E-value=5e-18 Score=161.04 Aligned_cols=237 Identities=17% Similarity=0.167 Sum_probs=156.1
Q ss_pred cccc-eEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q psy9976 28 VRQV-VTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSV 106 (349)
Q Consensus 28 Ai~~-~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~i 106 (349)
|||- ++++.+++.++..+++.+... . .++ ...-.|.+..++..+.+.... .|++++|.++|
T Consensus 30 al~~~~~~v~v~~~~~~~v~~~~~~g-----~----~l~--------~~~~~n~~~~~~~~~~~~~g~-~~~~i~i~~~I 91 (324)
T TIGR00144 30 ALEEPEIVIGLKESDDMGVEFTSHAE-----G----KLG--------EEYRRSRIMEAARKTLKHIGS-EGFHFTVRSMF 91 (324)
T ss_pred EEeCCcEEEEEEECCCceEEeccccc-----c----ccc--------chhHHHHHHHHHHHHHHHhCC-CCEEEEEeecC
Confidence 6665 788888887776665554321 0 111 112246676666655443222 59999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEec----C----
Q psy9976 107 PMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDC----K---- 178 (349)
Q Consensus 107 P~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~----~---- 178 (349)
|+++|||||||..+|.+.|++++++.++ +++++++++.+. .++|. |.+++.+|| ++ ++. .
T Consensus 92 P~~~GLGSsaa~avA~~~a~~~l~~~~l-s~~el~~~a~~g------e~s~~-~va~~~~GG---~v-v~~G~~~~~~~~ 159 (324)
T TIGR00144 92 PAHSGLGSGTQLSLAVGRLVSEYYGMKF-TAREIAHIVGRG------GTSGI-GVASFEDGG---FI-VDGGHSSKEKSD 159 (324)
T ss_pred CCccCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHhCC------CCCcc-ceeeeeeCC---EE-EECCcccccccc
Confidence 9999999999999999999999999999 999999998854 44555 678899999 34 331 1
Q ss_pred -----------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 179 -----------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 179 -----------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
+..+.+ ++. |+|+++++.|+.+ +|.+. | ..++|.+. ..++.++
T Consensus 160 ~~~~~~~~~~~~~~~~r--~~~-p~~~~vlviP~~~-~t~~a----r------e~~~lp~~--~~i~~~d---------- 213 (324)
T TIGR00144 160 FLPSSASSAKPAPVIAR--YDF-PDWNIILAIPEID-SVSGR----R------EVNIFQKY--CPVPLRD---------- 213 (324)
T ss_pred cCcccccCCCCCCeEEe--cCC-CCcEEEEEecCCC-CCCcH----H------HHHHHHhc--CCCCHHH----------
Confidence 011222 333 5899999999977 55432 1 12234321 1122221
Q ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhhhccc--CCCChhHHHHHHHHHcCCCCeEEEeccc
Q psy9976 248 SDEEYKRGHHVVTEIDRT--YKGANALKEGDFETFGKLMNESHDSLRDDY--EVSCKELDDIAHCAQSLPGVLGCRMTGG 323 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv--~~~~~al~~~d~~~lg~lm~~s~~~lr~~~--~vs~p~ld~l~~~a~~~~Ga~gakltGa 323 (349)
. .+..|+ .++..+|.++|++.|++.|++-+..--+.. +.-.|.+..+++.+.+ ++|+-|||+
T Consensus 214 ----v-------~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~---a~g~~iSGs 279 (324)
T TIGR00144 214 ----V-------ERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS---APGAGMSSF 279 (324)
T ss_pred ----H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh---ccCceecCC
Confidence 1 222232 556999999999999999986443210101 1236677777777654 488999876
Q ss_pred CccceeEEEeCCC
Q psy9976 324 GFGGCAIALVSPL 336 (349)
Q Consensus 324 G~GG~~i~l~~~~ 336 (349)
| +++++|++++
T Consensus 280 G--PTv~al~~~~ 290 (324)
T TIGR00144 280 G--PTVYAVTDEK 290 (324)
T ss_pred C--CeEEEEecCc
Confidence 5 9999999864
No 41
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=2.3e-19 Score=166.25 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=131.1
Q ss_pred CHhHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC
Q psy9976 76 KWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP 155 (349)
Q Consensus 76 ~w~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 155 (349)
.|.|++..++..+.+......|+++.|.++||+++|||||||.++|++.+++++++.++ ++++++++|.++|.
T Consensus 66 ~~~N~v~~a~~~l~~~~~~~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~l-s~~el~~la~~iga------ 138 (271)
T PRK00343 66 EEDNLIVRAARLLQKATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGL-SRDELAELGLKLGA------ 138 (271)
T ss_pred CcccHHHHHHHHHHHHhCCCCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC------
Confidence 46799999999887754444699999999999999999999999999999999999999 99999999988743
Q ss_pred ChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCH
Q psy9976 156 CGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSL 235 (349)
Q Consensus 156 ~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~ 235 (349)
|..+++.|+ ..+....+..+++++. +...++|++|+.+.+|. ..|+. . .+.+ ..
T Consensus 139 ----Dvp~~l~g~---~~~~~g~g~~~~~l~~---~~~~~vl~~p~~~~sT~-~~~~~-~--------~~~~----~~-- 192 (271)
T PRK00343 139 ----DVPVFVRGH---AAFAEGIGEILTPVDL---PEKWYLVVKPGVHISTA-EIFSD-P--------DLTR----DT-- 192 (271)
T ss_pred ----CceEEecCC---cEEEEecCCEEEECCC---CCcEEEEEeCCCCcChH-HHHhh-h--------hhcc----CC--
Confidence 655555554 3444444445566543 34557889999988764 33311 0 0000 00
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC
Q psy9976 236 KSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315 (349)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga 315 (349)
+.. . ...+......+|++.... --.|+++.+.+.+.+ .|+
T Consensus 193 ------------~~~-------~------~~~~~~~~~~Ndle~~~~--------------~~~P~~~~~~~~l~~-~ga 232 (271)
T PRK00343 193 ------------PKI-------S------IADFLAGPFRNDCEPVVR--------------KRYPEVAQALSWLLE-YAP 232 (271)
T ss_pred ------------Chh-------h------HHHHHhccccCCHHHHHH--------------HhChHHHHHHHHHHh-CCC
Confidence 100 0 011111112345555431 257889999999988 587
Q ss_pred eEEEecccCccceeEEEeCCCc-hhhhhh
Q psy9976 316 LGCRMTGGGFGGCAIALVSPLN-LRRGRK 343 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~~~~~-~~~~~~ 343 (349)
+.|||+| .++++|++++. ++++.+
T Consensus 233 --~~mSGSG--~tvF~l~~~~~~a~~~~~ 257 (271)
T PRK00343 233 --SRMTGTG--ACVFAEFDTEAEAEQVLA 257 (271)
T ss_pred --eEEeccc--cceEEEcCCHHHHHHHHH
Confidence 8899998 99999998743 444443
No 42
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.79 E-value=4e-18 Score=159.00 Aligned_cols=201 Identities=14% Similarity=0.172 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.|++..++..+.+.....+|++|+|.++||+++|||||||.++|++.+++++++ + +.+++.+++.++ |
T Consensus 65 ~Nlv~kA~~~l~~~~~~~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--l-s~~~l~~ia~~l---------G 132 (283)
T PRK14610 65 NNTVQRAIGLLLRHSPVRTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--I-DEQILNELALSV---------G 132 (283)
T ss_pred CcHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--C-CHHHHHHHHHHh---------C
Confidence 589988888876654434599999999999999999999999999999999996 6 889999998874 5
Q ss_pred hhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeC-CCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 158 IMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINS-NVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s-~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
. |...+++|| ..+....+..+++++....+. .++|+.+ ++..+| ...|.. +... ...
T Consensus 133 a-DvPffl~g~---~a~~~G~Ge~l~~l~~~~~~~-~~vl~~p~~~~~sT-~~vy~~-----------~~~~---~~~-- 190 (283)
T PRK14610 133 S-DVPACLDSK---TLFVRGIGEDILLLPDLSLPT-YVVLVAPKGKFLST-RKVFNK-----------YECK---AFS-- 190 (283)
T ss_pred C-CCcEEEECC---eEEEEecccEEEECcccCCCC-eEEEEECCCCccCh-HHHHHh-----------hccc---ccC--
Confidence 4 999999997 456776677777775311133 4777777 566665 344421 1100 000
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
+.. .. . .+..+++.. ++...++.++...--.+|+++++.+..++..|++
T Consensus 191 -----------~~~--~~-~--------------~~~~~~~~~---~~~~~~Ndle~~~~~l~P~l~~~~~~l~~~~ga~ 239 (283)
T PRK14610 191 -----------EPI--DN-L--------------PVAQDDLLE---LLKEARNDLLETAISLVPEIEEILFVLESLEGCI 239 (283)
T ss_pred -----------Ccc--cc-c--------------ccchhHHHH---HHHHhcCchHHHHHHhChHHHHHHHHHHhcCCCc
Confidence 000 00 0 011112221 1222244444311225899999999887534889
Q ss_pred EEEecccCccceeEEEeCC-Cchhhhhhhc
Q psy9976 317 GCRMTGGGFGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
++.|||+| .|+++++++ +.++++.+.+
T Consensus 240 ~a~mSGSG--sTvf~l~~~~~~a~~~~~~l 267 (283)
T PRK14610 240 LSRMSGSG--ATCFALFEEEEAAEAAARYL 267 (283)
T ss_pred eEEEeCcc--cceeEEeCCHHHHHHHHHHh
Confidence 99999998 899999976 4556665554
No 43
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=8.8e-18 Score=155.61 Aligned_cols=163 Identities=11% Similarity=0.064 Sum_probs=115.5
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcc--cCC--CCCcCHhHHHHHHHHHHHhcCCCCCceEEEEE
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQ--KLT--PGAPKWANYVKGVVSIFNDRVAPVPGFNAVIL 103 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~--~l~--~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i~ 103 (349)
-||++..|.. +|+|+.+.|.|....++-.+.+++...+.. .+. +..+.-.|++..++..+.+......|++|.+.
T Consensus 8 KINL~L~V~g-kR~DGYH~l~sl~~~i~l~D~l~i~~~~~~~i~i~~~~~~~~~~Nlv~ra~~~l~~~~g~~~~v~I~i~ 86 (288)
T PRK00650 8 KLNLFLQLLG-KREDGFHEIVTRYQAIAFGDQLSLSISSRDSLQVINACHLETPSNSIWKSVALFRRYTGITTPVSWRVV 86 (288)
T ss_pred eEEeeeccCC-cCCCCCcceeEEEEEcCCCCEEEEEECCCCcEEEeCCCCCCccccHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 6777766663 567777777776543443455555421110 010 00011258998888887765333458999999
Q ss_pred eCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeE
Q psy9976 104 SSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEAR 183 (349)
Q Consensus 104 s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~ 183 (349)
++||+++|||||||..+|++.+++++++.++ +++++.+++.++|- |...++.|| ..+....+..++
T Consensus 87 K~IP~gaGLGggSS~aAa~L~~ln~l~~~~l-s~~eL~~lA~~lGa----------DvPffl~~g---~a~~~G~Ge~l~ 152 (288)
T PRK00650 87 KQIPIGAGLAGGSSNAATALFALNQIFQTGL-SDEELRSLAEKIGM----------DTPFFFSTG---SALGVGRGEKII 152 (288)
T ss_pred eCCCCcCCcCcchhHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC----------cchhhhcCc---eEEEEecCCEEE
Confidence 9999999999999999999999999999999 99999999998853 888888876 444444455667
Q ss_pred EeeCCCCCCeEEEEEeCCCCcccC
Q psy9976 184 HIPLGDDHQYVFLIINSNVHHELS 207 (349)
Q Consensus 184 ~l~~~~~~~~~~ll~~s~~~~~~~ 207 (349)
+++.+ ++..++++.|++..+|.
T Consensus 153 ~~~~~--~~~~~vlv~P~~~vsT~ 174 (288)
T PRK00650 153 ALEES--VSDRYVLYFSSEGVLTS 174 (288)
T ss_pred ECcCC--CCceEEEEeCCCCCChH
Confidence 76543 45678999999887764
No 44
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.75 E-value=5.7e-17 Score=148.78 Aligned_cols=251 Identities=15% Similarity=0.136 Sum_probs=162.6
Q ss_pred ecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCC-cc--cCC---CCCcCHhHHHHHHHHHHHhcCCCCCce
Q psy9976 25 MMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPK-VQ--KLT---PGAPKWANYVKGVVSIFNDRVAPVPGF 98 (349)
Q Consensus 25 ~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~-~~--~l~---~~~~~w~~~v~~~~~~l~~~~~~~~g~ 98 (349)
|+ -||++..|.. +|+|+++.|.+...-++..+++++..-+ +. ... ..-+.-.|++..+...|++......|+
T Consensus 9 pA-KiNL~L~V~g-kr~DGYHel~sl~~~id~~D~l~i~~~~~~~~~~~~~~~~~lp~~~NLv~rAa~ll~~~~~~~~~v 86 (289)
T COG1947 9 PA-KINLFLHVTG-KRADGYHELETLFQFIDLGDELTIRPRDDDGFIVLGTFADGLPTDENLVYRAAELLRKRTGIAGGV 86 (289)
T ss_pred cc-eEEEEEEecc-cCCCCceeeEEEEEEeccCCEEEEEECCCCCceEecCCCCCCCCcchHHHHHHHHHHHHhCCCCCe
Confidence 45 7888888874 6678888888874333334555554332 11 000 011111289999999888766566789
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecC
Q psy9976 99 NAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCK 178 (349)
Q Consensus 99 ~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~ 178 (349)
+|+|+++||+++|||+.||.++|++.+|+++|+.++ +.++|.+++.++ |. |...|++|| .-+....
T Consensus 87 ~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~l-s~~eL~~Lg~~L---------Ga-DVPffl~g~---tA~a~G~ 152 (289)
T COG1947 87 SIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGL-SLEELAELGLRL---------GA-DVPFFLSGG---TAFAEGR 152 (289)
T ss_pred eEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHh---------CC-CcCeeeeCC---ceEEEEc
Confidence 999999999999999999999999999999999999 999999999987 44 999999987 4455666
Q ss_pred CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHH
Q psy9976 179 THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHV 258 (349)
Q Consensus 179 ~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~ 258 (349)
+..+++++-+ +...++++++++..+|. ..|. ...+...+ ..+
T Consensus 153 GE~l~~~~~~--~~~~~vl~~P~v~vsT~-~vy~--------------~~~~~~~~-----------~~~---------- 194 (289)
T COG1947 153 GEKLEPLEDP--PEKWYVLAKPGVGVSTK-EVYK--------------DPELTRNT-----------PKS---------- 194 (289)
T ss_pred cceeeECCCC--CCceEEEEeCCCCCChH-HHHc--------------CcCccccc-----------CCc----------
Confidence 7777776532 46778999998877764 3332 10000000 000
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCc-
Q psy9976 259 VTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLN- 337 (349)
Q Consensus 259 i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~- 337 (349)
.....++...++..+.+.. ++.|+..---..|+++.......+ .|+.+++|||+| .|++++++.+.
T Consensus 195 -------~~~~~~~~~~~~~~~~~~~---~NdLe~~~~~~~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~ 261 (289)
T COG1947 195 -------EPLIAALSLENLKQIAPFL---INDLEKVALRLYPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKE 261 (289)
T ss_pred -------hhhhHHHhhhhHhhhcccc---ccchHHHHHHhChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHH
Confidence 0111111112222221111 112222111245778886666776 488999999998 99999998865
Q ss_pred hhhhh
Q psy9976 338 LRRGR 342 (349)
Q Consensus 338 ~~~~~ 342 (349)
++++-
T Consensus 262 a~~~~ 266 (289)
T COG1947 262 AQRVA 266 (289)
T ss_pred HHHHH
Confidence 44443
No 45
>PRK05905 hypothetical protein; Provisional
Probab=99.68 E-value=1.2e-15 Score=139.44 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=114.3
Q ss_pred cccceEEEEEEecC-CCeEEEEecCCCC-CCCCceEEeCCCc---c-cCC---CC-CcCHhHHHH-HHHHHHHhcCCCCC
Q psy9976 28 VRQVVTVLLGSRNN-SNQIHLHSDSARA-DKPTDISFDIPKV---Q-KLT---PG-APKWANYVK-GVVSIFNDRVAPVP 96 (349)
Q Consensus 28 Ai~~~~~v~~~~~~-d~~i~v~s~~~~~-~~~~~~~~~l~~~---~-~l~---~~-~~~w~~~v~-~~~~~l~~~~~~~~ 96 (349)
-||++..|.. +|+ |+++.|.|....+ +-.+++++...+. . .+. .. ... .|.+. .++..+.+.....+
T Consensus 8 KINL~L~I~g-kR~DdGYHel~sv~~~i~~l~D~l~i~~~~~~~~~i~~~~~~~~~~~~-~nli~~ka~~~l~~~~~~~~ 85 (258)
T PRK05905 8 KINLGLSIYK-KCKKVTKHKLESIFILVENVYDDIEIEKIEKNIDDIHYFDETNEILVY-SRLILVKTLEWLRDKYNIKN 85 (258)
T ss_pred eEEeeeeecc-cCCCCCCcceeEEEEEccccccEEEEEECCCCCceEEEeCCCcCCCCC-cchHHHHHHHHHHHHhCCCC
Confidence 6777777763 556 4777777775444 3345555542211 0 000 00 112 57776 88887766544346
Q ss_pred ceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc-cCCeEEEE
Q psy9976 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG-EEGSALLI 175 (349)
Q Consensus 97 g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g-g~~~~~~~ 175 (349)
|++|.+.++||.++||||+||.++|++.+|+++++ + +.+++.+++.++ |. |...+++| + ..+.
T Consensus 86 ~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--l-s~~~L~~ia~~l---------GA-DVPFfl~g~~---~a~~ 149 (258)
T PRK05905 86 HFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--I-NEINYKDVVNKL---------GS-DIPFFLSGYK---TAYI 149 (258)
T ss_pred CeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--C-CHHHHHHHHHHh---------CC-CcceEEeCCc---cEEE
Confidence 89999999999999999999999999999999997 5 889999998876 44 99999999 6 3455
Q ss_pred ecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhH
Q psy9976 176 DCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211 (349)
Q Consensus 176 d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y 211 (349)
...+..+++++.+ +...++|+++++..+|. ..|
T Consensus 150 ~G~GE~l~pl~~~--~~~~~vlv~P~~~vST~-~vY 182 (258)
T PRK05905 150 SDYGSQVEDLIGQ--FKLTYKVIFMNVNVSTK-KVF 182 (258)
T ss_pred EeeCceeEECCCC--CCceEEEECCCCCCCHH-HHH
Confidence 6566677887543 24568999999888764 444
No 46
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.66 E-value=4.7e-16 Score=113.42 Aligned_cols=67 Identities=40% Similarity=0.450 Sum_probs=63.3
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhcc
Q psy9976 99 NAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168 (349)
Q Consensus 99 ~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg 168 (349)
+|+++|+||+++|||||||+++|++.+++++++.++ ++++++++++.+|+.+ |.|+|. |+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~-~~~~l~~~a~~~e~~~-g~~~g~-d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPL-SKEELAKLAQEAERYI-GKPSGI-DDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSS-BHHHHHHHHHHHHHHC-SSSHSH-HHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHHHHc-CCCChh-hHHHHHhCc
Confidence 589999999999999999999999999999999999 9999999999999877 999777 779999997
No 47
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.65 E-value=1.3e-13 Score=129.55 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=140.7
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
.+.+..++..+++......+++|.+.+++|.++|||||||..+|++.|++++++.++ ++.++.+++.+.| |..|+
T Consensus 66 ~~~v~~~l~~~~~~~~~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l-~~~eL~~lA~~gs----Gsa~~ 140 (305)
T TIGR01240 66 NEKTSNCLDDFRQLRKEQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPL-DTSELSRIARKGS----GSACR 140 (305)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhc----CCeee
Confidence 357788888887765555689999999999999999999999999999999999999 9999999999876 44444
Q ss_pred hhHHHHHHhccCCeEEEEecC----CCeeEEeeCCCC-CCeE-EEEEeCCCCccc-ChhhHHHHHHHHHHHHHHhchhcc
Q psy9976 158 IMDQYVSVMGEEGSALLIDCK----THEARHIPLGDD-HQYV-FLIINSNVHHEL-SSSEYAVRRAQCKSVLDKLHRVSF 230 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~----~~~~~~l~~~~~-~~~~-~ll~~s~~~~~~-~~~~y~~r~~~~~~a~~~l~~~~l 230 (349)
++||| ++..+.. +....++|.+.. ++++ ++++.+..+... .+. .+...+..
T Consensus 141 ------s~~GG---~v~~~~g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~----------gm~~~~~t--- 198 (305)
T TIGR01240 141 ------SLFGG---YVAWEKGKDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQ----------GMQLTVAT--- 198 (305)
T ss_pred ------eeecC---eEEEEcCCCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHH----------HHHHhhhc---
Confidence 78999 4555431 122344433311 2333 334444443321 111 01111110
Q ss_pred CCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-------cCCCChhHH
Q psy9976 231 RDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-------YEVSCKELD 303 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-------~~vs~p~ld 303 (349)
++....+..+ ..+ +..++++||.++|++.||++...+-..+... +-.-+|+--
T Consensus 199 -----------------s~~~~~~v~~-~~~--~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~ 258 (305)
T TIGR01240 199 -----------------SELFKEWIEH-VVP--DFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSK 258 (305)
T ss_pred -----------------CccHHHHHHH-HHH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHH
Confidence 1111122222 111 3789999999999999999887665554432 122334433
Q ss_pred H---HHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 304 D---IAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 304 ~---l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
. +++..++ .|...+-..-|| +.+..|++++..+++.+.+
T Consensus 259 ~ii~~v~~~r~-~g~~~~~T~DAG--pNv~vl~~~~~~~~v~~~~ 300 (305)
T TIGR01240 259 RAMSAVHTLRQ-GGTICYFTMDAG--PNVKVLYLAENLSKLFEFI 300 (305)
T ss_pred HHHHHHHHHHh-CCCcEEEEEcCC--CCEEEEEccccHHHHHHHH
Confidence 3 4444566 476666666676 9999999999988876643
No 48
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.61 E-value=4.8e-15 Score=135.99 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=114.3
Q ss_pred cccceEEEEEEecCCCeEEEEecCCCC-CCCCceEEeCCCcc--cCCCC--CcCHhHHHHHHHHHHHhc--CC----CCC
Q psy9976 28 VRQVVTVLLGSRNNSNQIHLHSDSARA-DKPTDISFDIPKVQ--KLTPG--APKWANYVKGVVSIFNDR--VA----PVP 96 (349)
Q Consensus 28 Ai~~~~~v~~~~~~d~~i~v~s~~~~~-~~~~~~~~~l~~~~--~l~~~--~~~w~~~v~~~~~~l~~~--~~----~~~ 96 (349)
-||++..|.. +| |+.+.|.|....+ +-.+++++...... .+... .+.-.|++..++..+.+. +. ..+
T Consensus 8 KINL~L~v~~-kr-dGyH~l~s~~~~i~~l~D~l~i~~~~~~~~~i~~~~~~p~~~NLv~kA~~~l~~~~~~~~~~~~~~ 85 (257)
T PRK04181 8 KVNIFLKILG-KR-GNYHELISRFVLVKDLFDEIEFVPKSAESFELIGNFDCPLEENIIYKAYQELKNKGFSNELIEFFK 85 (257)
T ss_pred eEEEEEeeCc-CC-CCCceeheeeeEccCcCcEEEEEECCCCCEEEEcCCCCCCCCcHHHHHHHHHHHhccccccccCCC
Confidence 6777766664 45 7777777765444 33445555421100 01000 001258888888877652 21 125
Q ss_pred ceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc-cCCeEEEE
Q psy9976 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG-EEGSALLI 175 (349)
Q Consensus 97 g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g-g~~~~~~~ 175 (349)
|++|.+.++||+++|||||||.++|++.+++++++.++ +++++.+++.++ |. |...+++| + ..+.
T Consensus 86 gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~l-s~~eL~~lA~~l---------Ga-DvPffl~~~~---~a~~ 151 (257)
T PRK04181 86 KKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKL-SLEELAEIGSKV---------GA-DVAFFISGYK---SANV 151 (257)
T ss_pred ceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHh---------CC-CccEEecCCc---eEEE
Confidence 89999999999999999999999999999999999999 999999999876 44 99999998 5 4455
Q ss_pred ecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhH
Q psy9976 176 DCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211 (349)
Q Consensus 176 d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y 211 (349)
...+..+++++.+ +. .++|+++++..+|. ..|
T Consensus 152 ~G~Ge~l~~l~~~--~~-~~~lv~P~~~vsT~-~vy 183 (257)
T PRK04181 152 SGIGEIVEEFEEE--IL-NLEIFTPNIFCSTK-AVY 183 (257)
T ss_pred EeeCCeeEECCCC--CC-eEEEECCCCCcCHH-HHH
Confidence 6566677877532 23 38899999888764 455
No 49
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=4.8e-13 Score=119.81 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC-Ch
Q psy9976 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP-CG 157 (349)
Q Consensus 79 ~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~-~G 157 (349)
+.+..++..+.+......|+++.++|+||.++||.||||+..|++.|+..+.+.++ ++.+++.+..++-.+. |.. .|
T Consensus 52 ~li~~~~~~v~e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~-~~~~i~~l~a~~S~~a-GvSvTG 129 (278)
T COG1685 52 RLIERCVERVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEI-DDFEILRLGARASKEA-GVSVTG 129 (278)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHHhc-CceEec
Confidence 47778888777766555699999999999999999999999999999999999998 9999999888876542 432 45
Q ss_pred hh-HHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 158 IM-DQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 158 ~~-D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
.. |..++.||| +.+.|.+...+-... +. +++..+|.-++.+..+.. ++.+
T Consensus 130 A~DDa~AS~~GG---~~iTDN~~m~Ilrr~-~~-~~~~vlI~~p~~k~~~~~------------------------vdv~ 180 (278)
T COG1685 130 AFDDACASYLGG---IVITDNRKMRILRRL-DL-PELTVLILAPGEKRLSAN------------------------VDVN 180 (278)
T ss_pred cchHHHHHHhCC---eEEecchhheehhcc-cc-CCceEEEEecCCcccccc------------------------CCHH
Confidence 44 566699998 777776665443321 22 577778877886644321 2222
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
.++ +..+++ +.+.+.-.+|+|.. .|.-|.......++.... +...+.+ .|+.
T Consensus 181 ~~r--------------~~a~~~------e~A~~lA~~G~~~~---Am~lNG~~y~~aLG~~~e----~~~~ale-~GA~ 232 (278)
T COG1685 181 RLR--------------LIAPVV------EEAFRLALKGEYFK---AMVLNGILYCSALGYDLE----PALKALE-AGAA 232 (278)
T ss_pred HHH--------------HhhHHH------HHHHHHHhcccHHH---HHHHhHHHHHHHhCCChH----HHHHHHh-cccc
Confidence 221 122222 23333334577765 466666655555666552 3556777 5999
Q ss_pred EEEecccCccceeEEEeCCC
Q psy9976 317 GCRMTGGGFGGCAIALVSPL 336 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~~ 336 (349)
++-+||-| ++.++|++++
T Consensus 233 ~aglSGtG--Pa~~Al~~~~ 250 (278)
T COG1685 233 AAGLSGTG--PAYFALTEDP 250 (278)
T ss_pred eeccCCCC--CceEEEecCc
Confidence 99999876 9999999887
No 50
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.55 E-value=6.1e-13 Score=120.26 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=147.1
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
.|++|.|.+++|...||||-..+..|+..++++++++.+ +..+++....+ |-.||+ -.++.-+|| +.+
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~-~~~elA~~vgR------G~tSgi-Gv~afe~GG----FIV 137 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLEL-SIRELAFAVGR------GGTSGI-GVYAFEYGG----FIV 137 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHcc------CCccce-eEEEEEECC----EEE
Confidence 689999999999999999999999999999999999999 98888777664 555676 567778888 345
Q ss_pred ecC--C------Ce--eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 176 DCK--T------HE--ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 176 d~~--~------~~--~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
|.. . .. +-...+|. +|+|+|+-|..++... +++| ..++.+ ..
T Consensus 138 DGGh~~~f~ps~~sP~I~R~dfPe--dW~~VlaIP~~~rg~~------~~~E----~~if~~----------------~~ 189 (312)
T COG1907 138 DGGHSFGFLPSSASPLIFRLDFPE--DWRFVLAIPEVERGVS------GRRE----VDIFKK----------------YC 189 (312)
T ss_pred ECCcccCcccCCCCceeeeecCCC--ceEEEEEecCCCcccc------chHH----HHHHHh----------------cC
Confidence 631 1 11 22334543 8999999999876432 1111 233321 12
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh---hc--ccCCCChhHHHHHHHHHcCCCCeEEEe
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSL---RD--DYEVSCKELDDIAHCAQSLPGVLGCRM 320 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~l---r~--~~~vs~p~ld~l~~~a~~~~Ga~gakl 320 (349)
.++.+..+++.|.+ ..+++.|+-++|++.||+.|++-|... -+ .-.+.|+.++.+++.+.+ + +++|-+
T Consensus 190 p~p~~~~~~ls~~v-----Lm~mmPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~-~-a~~agq 262 (312)
T COG1907 190 PVPLEEVGELSHRV-----LMKMMPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE-A-AYGAGQ 262 (312)
T ss_pred CCCHHHHHHHHHHH-----HHHHhHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH-h-cccccc
Confidence 23545556666665 688999999999999999999988865 22 245688899999999999 5 788888
Q ss_pred cccCccceeEEEeCCCchhhh
Q psy9976 321 TGGGFGGCAIALVSPLNLRRG 341 (349)
Q Consensus 321 tGaG~GG~~i~l~~~~~~~~~ 341 (349)
| .||+++++++++....++
T Consensus 263 S--SwGPtvY~i~d~~~~~~~ 281 (312)
T COG1907 263 S--SWGPTVYGIVDSREAGSV 281 (312)
T ss_pred c--ccCCEEEEeccccccchH
Confidence 5 689999999998775543
No 51
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.52 E-value=6.7e-13 Score=117.54 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=141.5
Q ss_pred CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEE
Q psy9976 95 VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALL 174 (349)
Q Consensus 95 ~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~ 174 (349)
..|.++.+.|+||.|.||+||+|..||++.|+.+++|.++ +..+++++|..+|.. |- .+|-+ +++
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l-~es~iakLcv~iEPt---------Ds--iiF~~---~tl 145 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGREL-RESEIAKLCVSIEPT---------DS--IIFDK---ATL 145 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCC-CHHHHHHHHhhcCCc---------cc--eeccc---cee
Confidence 4689999999999999999999999999999999999999 999999999999954 32 23544 788
Q ss_pred EecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHH-HHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHH
Q psy9976 175 IDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAV-RRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253 (349)
Q Consensus 175 ~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~-r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 253 (349)
||.+...+... ....|.+.+|++.++....|. .|+. +|.+ +.+ ++. +
T Consensus 146 Fd~r~g~~~~~-~g~~PpL~ilv~e~~~~v~T~--~y~q~~r~e-----~~~----------~~~--------------~ 193 (293)
T COG4542 146 FDQREGRVIEF-LGEMPPLHILVFEGKGTVETV--DYNQPPRGE-----KLL----------APL--------------A 193 (293)
T ss_pred ehhccchHHHh-cCCCCceEEEEEcCCCceeee--eccCCchhh-----hhh----------hhH--------------H
Confidence 88766555432 222268899999988777665 3432 2211 000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 254 RGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 254 r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
-+.+. .+.+.+|+..+|...+|+.-..|-...++. .+-|.++.|.+.+.+. +++|--..-+ |++++|.
T Consensus 194 ----e~~~l--~~~v~~A~~~~~~~~lG~AAT~SAv~~Q~~--LPK~~~~~lL~l~e~~-~~~Gv~VAHS---GtmlGli 261 (293)
T COG4542 194 ----ELGNL--INLVEKALKVGDPKLLGEAATLSAVKNQDR--LPKPGLNELLRLVEET-CAIGVIVAHS---GTMLGLI 261 (293)
T ss_pred ----HHHHH--HHHHHHHHccCCHHHHHHHHHHHHHhhccc--cCchhHHHHHHHHHHh-cccceEEecc---CceEEee
Confidence 11111 456677899999999999999887766553 6888999999999995 7889888777 6999998
Q ss_pred CCCchhhhhhhc
Q psy9976 334 SPLNLRRGRKKK 345 (349)
Q Consensus 334 ~~~~~~~~~~~~ 345 (349)
-+........|+
T Consensus 262 ~D~~~~~d~~k~ 273 (293)
T COG4542 262 YDRKYALDPRKL 273 (293)
T ss_pred eccccccchHHH
Confidence 877644444443
No 52
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.43 E-value=1.6e-13 Score=104.53 Aligned_cols=77 Identities=34% Similarity=0.505 Sum_probs=66.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh-hhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe-CCCchhhhhhhc
Q psy9976 268 GANALKEGDFETFGKLMNESHDS-LRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV-SPLNLRRGRKKK 345 (349)
Q Consensus 268 ~~~al~~~d~~~lg~lm~~s~~~-lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~-~~~~~~~~~~~~ 345 (349)
|++||.++|++.|+++|+++|.. ......+.+|+++.+++.+++ .|+++++|||+|||||+++|+ +.+.++++++.+
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 57899999999999999999884 222467899999999999999 699999999999999999999 557777777665
No 53
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=99.37 E-value=2.9e-10 Score=101.98 Aligned_cols=178 Identities=13% Similarity=0.068 Sum_probs=103.1
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHH-HHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYV-KGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v-~~~~ 85 (349)
|+.++|+|-+-..|+..... |++++..... +||.+.++ + -|.++ .+.....+....+ .-++
T Consensus 11 k~LlaGdYs~lv~glsahai-a~nkr~~cs~-------vrvKskds----w---lfhis---i~g~~knsfiEl~~~~Vf 72 (337)
T COG3890 11 KLLLAGDYSILVEGLSAHAI-AINKRAFCSF-------VRVKSKDS----W---LFHIS---IKGIDKNSFIELRSDFVF 72 (337)
T ss_pred ceEEeccceeeeecceeeEE-Eeccccccce-------eEeccCce----E---EEEee---ecccCCChHHHHHHHHHH
Confidence 67789999888778776666 7777644332 45555442 0 11111 0111112221111 1234
Q ss_pred HHHHhc-CCCCCceEEE----EE--eC-CCC---CCCCChHHHHHHHHH--HHHHHhhCCCCCCHHHHHHHHHHHHHhhc
Q psy9976 86 SIFNDR-VAPVPGFNAV----IL--SS-VPM---GSGLSSSAALEVATY--TFLESITDEKTLKLTDKALACQEAEHSFA 152 (349)
Q Consensus 86 ~~l~~~-~~~~~g~~i~----i~--s~-iP~---g~GLgSSaA~~vA~~--~al~~~~~~~~~~~~~l~~~a~~~E~~~~ 152 (349)
.+|... ..-..++++. .. ++ +|. ..|||||||+++.+. ..+.+..+.++..+.++.++|+.+...-+
T Consensus 73 ~yF~~~~~~c~qnlev~~ddayy~q~~f~~d~g~KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQ 152 (337)
T COG3890 73 KYFAYLSQNCFQNLEVFADDAYYDQSNFFFDDGTKTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQ 152 (337)
T ss_pred HHHHhhhhhccccceeecchhhcccccceecCCccCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Confidence 444322 1112233333 11 11 222 699999999999987 33344355566235899999999988877
Q ss_pred CC-CChhhHHHHHHhccCCeEEEEecCCCeeEEee-C---CCCCCeEEEEEeCCCCcccC
Q psy9976 153 GV-PCGIMDQYVSVMGEEGSALLIDCKTHEARHIP-L---GDDHQYVFLIINSNVHHELS 207 (349)
Q Consensus 153 G~-~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~-~---~~~~~~~~ll~~s~~~~~~~ 207 (349)
|. .||. |.++++||+ +++-+|.+.-...++ + +. .++.++..+.....+|.
T Consensus 153 ggIGSGf-DiaaA~fGs---iiyrRF~p~li~~l~qig~~nf-g~y~LmmGd~a~gSeTv 207 (337)
T COG3890 153 GGIGSGF-DIAAAIFGS---IIYRRFEPGLIPKLRQIGAVNF-GDYYLMMGDQAIGSETV 207 (337)
T ss_pred CCCCccc-hhhHhhhcc---eEEeecCcchhhhhHhhCcccc-cCeeeeecccccCccch
Confidence 65 4555 999999998 777667664333331 1 11 47888888888766654
No 54
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.29 E-value=1.1e-09 Score=103.03 Aligned_cols=198 Identities=18% Similarity=0.174 Sum_probs=120.9
Q ss_pred eEEEEEe--CCCCCCCCChHHHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEE
Q psy9976 98 FNAVILS--SVPMGSGLSSSAALEVATYTFLESITDEKTLK-LTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALL 174 (349)
Q Consensus 98 ~~i~i~s--~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~-~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~ 174 (349)
+++.|.| ++|.++||+||||..+|++.|+..+++.++ + +.++..+|. +| ||. |.- ++||| ++.
T Consensus 104 ~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~-~~~~~ls~lAr------~G--SGS-a~r-S~~Gg---~v~ 169 (343)
T PLN02407 104 LHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKE-DFPGELSAIAR------QG--SGS-ACR-SLYGG---FVK 169 (343)
T ss_pred ccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHh------cc--ChH-HHH-HhhCC---eEE
Confidence 3677777 999999999999999999999999999998 8 889888888 35 665 655 99999 566
Q ss_pred EecCC----CeeEEeeCCCC---CCeEE--EEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 175 IDCKT----HEARHIPLGDD---HQYVF--LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 175 ~d~~~----~~~~~l~~~~~---~~~~~--ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
..... ...-..|++.. |++++ +|++.+.+.-..+. +.+.- +
T Consensus 170 w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~-----------GM~~t---------------v---- 219 (343)
T PLN02407 170 WNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTS-----------GMRES---------------V---- 219 (343)
T ss_pred ecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchH-----------HHHHh---------------h----
Confidence 65331 12222333221 34553 33444432211111 00000 0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-------cCCCChhHH---HHHHHHHcCCCC
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-------YEVSCKELD---DIAHCAQSLPGV 315 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-------~~vs~p~ld---~l~~~a~~~~Ga 315 (349)
.-++-.-.|..+++. ++..++.+||+++|+..||++.-.+-..+... +-..+|+-- .+++..++..|.
T Consensus 220 ~TSp~~~~w~~~~~~--~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~ 297 (343)
T PLN02407 220 ETSPLLQHRAKEVVP--KRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGT 297 (343)
T ss_pred hcChhHHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCC
Confidence 002222233333222 24789999999999999999987665554432 111234333 344444442253
Q ss_pred -eEEEecccCccceeEEEeCCCchhh-hhh
Q psy9976 316 -LGCRMTGGGFGGCAIALVSPLNLRR-GRK 343 (349)
Q Consensus 316 -~gakltGaG~GG~~i~l~~~~~~~~-~~~ 343 (349)
-.+--.-|| +.+..|++++..++ +.+
T Consensus 298 ~~v~yT~DAG--PNv~vl~~~~~~~~~v~~ 325 (343)
T PLN02407 298 PQVAYTFDAG--PNAVLIALNRKVAAQLLQ 325 (343)
T ss_pred ccEEEEecCC--CCEEEEEChhhhHHHHHH
Confidence 355566676 88999999888776 653
No 55
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=99.28 E-value=3e-09 Score=99.42 Aligned_cols=219 Identities=17% Similarity=0.088 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCCh
Q psy9976 78 ANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCG 157 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G 157 (349)
...++.+++.+++....-..+.|...++.|-++||+||||..+|+..|+..+++.++ |..++-++|+.+ ..|+
T Consensus 71 ~~k~~~~ld~~R~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~-d~~~lS~~AR~g------SGSa 143 (329)
T COG3407 71 NEKARRVLDRFRKEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDL-DDEFLSRIARLG------SGSA 143 (329)
T ss_pred HHHHHHHHHHHHHhhcccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCC-CHHHHHHHHHHh------ccch
Confidence 467899999998644434578889999999999999999999999999999999999 999999998864 2222
Q ss_pred hhHHHHHHhccCCeEEEEecCC-Cee-----EEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccC
Q psy9976 158 IMDQYVSVMGEEGSALLIDCKT-HEA-----RHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFR 231 (349)
Q Consensus 158 ~~D~~a~~~gg~~~~~~~d~~~-~~~-----~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~ 231 (349)
.-++||| ++.-+..+ ..+ .+.+++.+...-++++.+..+.-..+... +.-
T Consensus 144 ----~RS~~Gg---~~~W~~~~g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm-----------~~~------ 199 (329)
T COG3407 144 ----SRSIFGG---FVLWEKGEGEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGM-----------QLT------ 199 (329)
T ss_pred ----hhhhcCC---eeEeccCCCCccceeeeccccCccccceEEEEEccccCCCCchHHH-----------HHH------
Confidence 2378999 44444222 111 22233321234456556555443221111 100
Q ss_pred CCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-c------CCCChhHHH
Q psy9976 232 DVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-Y------EVSCKELDD 304 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~------~vs~p~ld~ 304 (349)
.. + ++..-.|..|.. +. ..++..+++++|++.|+++..++-..+... + -+-+++--.
T Consensus 200 --------~~--t---S~~y~~w~~~~~-~~--~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ 263 (329)
T COG3407 200 --------AE--T---SPFYDAWLEHSE-ED--LEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLR 263 (329)
T ss_pred --------HH--c---ChHHHHHHHHHH-Hh--HHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHH
Confidence 00 0 222223333332 22 378899999999999999887665544331 1 223445445
Q ss_pred HHHHHHcC--CCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 305 IAHCAQSL--PGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 305 l~~~a~~~--~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+++..+++ .|-..+-..-|| +.+..++..+..+++.+.+
T Consensus 264 ii~~v~~~r~~g~~~~fT~DaG--PnV~v~~~~~~l~~~~~~~ 304 (329)
T COG3407 264 IIEFVHELRKEGNAVYFTMDAG--PNVKVITLEENLIDLLEIL 304 (329)
T ss_pred HHHHHHHHHhcCCceEEEEcCC--CceEEEEecccHHHHHHHH
Confidence 55544443 132334444444 9999999999888876654
No 56
>KOG4644|consensus
Probab=99.26 E-value=3.3e-10 Score=109.12 Aligned_cols=210 Identities=16% Similarity=0.184 Sum_probs=136.4
Q ss_pred CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHH----HHHHHHHHHHhhcCCCChhhHHHHHHhccCC
Q psy9976 95 VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD----KALACQEAEHSFAGVPCGIMDQYVSVMGEEG 170 (349)
Q Consensus 95 ~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~----l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~ 170 (349)
..||++...|++|-|+|||.||-+....+.|+....+.-. ..+. +..-..+.|+ ++...+|+|||...++-|..
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~-gTeaLiHailHtvlrlEQ-ilTTGGGWQDQ~G~im~GIK 766 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRAD-GTEALIHAILHTVLRLEQ-ILTTGGGWQDQCGAIMEGIK 766 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhcccc-chhHhHHHHHHHHHHHHH-HhhcCCchhhhccchhhhhh
Confidence 4699999999999999999999999888889888877654 4333 3444446777 45677899999998888732
Q ss_pred eE-EEEe-cCCCeeEEeeCCC----CCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhc
Q psy9976 171 SA-LLID-CKTHEARHIPLGD----DHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQ 244 (349)
Q Consensus 171 ~~-~~~d-~~~~~~~~l~~~~----~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~ 244 (349)
.. .+.+ ..+.+++++.+|. +-+-++++++||.++ .|..+|+. .+| .-+.+.
T Consensus 767 ~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKTR---------------LAkNLLQd-ViR----n~far~--- 823 (948)
T KOG4644|consen 767 KGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKTR---------------LAKNLLQD-VIR----NFFARC--- 823 (948)
T ss_pred hccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCchH---------------HHHHHHHH-HHH----HHHHhh---
Confidence 11 1111 1133456666654 123368999999754 22334431 011 111100
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-ccCCCChhHHHHHHHHHc-CCCCeEEEecc
Q psy9976 245 KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRD-DYEVSCKELDDIAHCAQS-LPGVLGCRMTG 322 (349)
Q Consensus 245 ~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-~~~vs~p~ld~l~~~a~~-~~Ga~gakltG 322 (349)
+ . .+.-.|-+.|. +.++.+.+++|..+.+|+++...|...+- .-++..+...+|++.... ..| -.+-..|
T Consensus 824 ---~-a-~~Q~ah~l~~~--tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AG 895 (948)
T KOG4644|consen 824 ---K-A-TKQKAHKLAEA--TDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAG 895 (948)
T ss_pred ---H-H-HHHHHHHHHHH--HHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhcc
Confidence 1 1 11222334444 89999999999999999999988876533 235666677777776543 123 2334889
Q ss_pred cCccceeEEEeCCCc
Q psy9976 323 GGFGGCAIALVSPLN 337 (349)
Q Consensus 323 aG~GG~~i~l~~~~~ 337 (349)
||+||+++.+.+...
T Consensus 896 AGGGGFiYLl~kEpq 910 (948)
T KOG4644|consen 896 AGGGGFIYLLIKEPQ 910 (948)
T ss_pred CCCCcEEEEEecCCC
Confidence 999999999987643
No 57
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.02 E-value=1.8e-07 Score=84.58 Aligned_cols=200 Identities=23% Similarity=0.240 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy9976 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIM 159 (349)
Q Consensus 80 ~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~ 159 (349)
..+.+++.+.. .|+.+.+.+++|+|+|+|-|+|...+.+.+++..++. +.+..++.|+.+|-+ ..+|+.
T Consensus 62 ~~~~v~e~L~~-----~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~---~~~~a~~~AH~aEV~---~gtGLG 130 (283)
T COG1829 62 ITRKVIEKLGP-----DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGL---GEESAARIAHVAEVE---NGTGLG 130 (283)
T ss_pred hHHHHHHHhCc-----cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHH---cCCCch
Confidence 45677777763 3478999999999999999999999999999998875 467899999999864 345777
Q ss_pred HHHHHHhccCCeEEEEecCC---CeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 160 DQYVSVMGEEGSALLIDCKT---HEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 160 D~~a~~~gg~~~~~~~d~~~---~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
|..+..+||. .+.+.-.. ..++.+|.| +++++.+.-+. .+|. +++
T Consensus 131 DVvAq~~GGl--ViR~~pG~Pg~~~vd~Ip~~---~~~V~~~~~g~-l~T~---------------~vi----------- 178 (283)
T COG1829 131 DVVAQYTGGL--VIRVKPGGPGEGEVDRIPVP---GLRVITISLGE-LSTK---------------SVI----------- 178 (283)
T ss_pred HHHHHhcCcE--EEEecCCCCCeEEEEEeecC---CceEEEEEccc-ccHH---------------Hhh-----------
Confidence 9999999981 22332222 245666654 46766555442 3332 122
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCC
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG-ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~-~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga 315 (349)
+++..+ .+++. ..++ .+.|++-+++.| |+.+.+--+ ..+.++.++...++.... .|-
T Consensus 179 -----------~~~~~~----~i~~~--g~~~l~ellk~Ptle~f---~~~a~~FA~-~~Gl~~~~v~~~~~~~~~-~g~ 236 (283)
T COG1829 179 -----------TDEVVR----KINEA--GKRALAELLKNPTLENF---MEEAREFAR-RTGLMSEEVKEAAEALHS-VGG 236 (283)
T ss_pred -----------hhHHHH----HHHHH--HHHHHHHHHhCCCHHHH---HHHHHHHHH-HhCcCHHHHHHHHHHhhh-cCc
Confidence 111111 12222 2222 334555566665 666655333 377888887777777776 466
Q ss_pred eEEEecccCccceeEEEe-CCCchhhhhhhcc
Q psy9976 316 LGCRMTGGGFGGCAIALV-SPLNLRRGRKKKS 346 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~-~~~~~~~~~~~~~ 346 (349)
+++.|.= .|-.++++. ..+..+++.+.+.
T Consensus 237 l~as~~m--lg~tVFa~~~~~e~~~~~~~~~~ 266 (283)
T COG1829 237 LGASMAM--LGVTVFALSPEAERLAEVGKDLG 266 (283)
T ss_pred hhHhHHh--hCcEEEEeccccchHHHHHHhhc
Confidence 7665533 247788888 3456666665543
No 58
>KOG4519|consensus
Probab=98.81 E-value=1.9e-06 Score=79.60 Aligned_cols=68 Identities=22% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCCCChHHHHHHHHHHHHHHhhCC---C-------C-C-CHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEe
Q psy9976 109 GSGLSSSAALEVATYTFLESITDE---K-------T-L-KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176 (349)
Q Consensus 109 g~GLgSSaA~~vA~~~al~~~~~~---~-------~-~-~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d 176 (349)
+.|||||||++.++..++.+.++. + + + +++-+-.+|+.+.-..+|+-+...|..+++||. ..|.+
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrR 228 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRR 228 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeee
Confidence 789999999999999777766642 1 2 1 245567788888777888765555999999997 56666
Q ss_pred cCC
Q psy9976 177 CKT 179 (349)
Q Consensus 177 ~~~ 179 (349)
|.+
T Consensus 229 F~P 231 (459)
T KOG4519|consen 229 FSP 231 (459)
T ss_pred CCH
Confidence 753
No 59
>KOG1537|consensus
Probab=98.80 E-value=4.5e-08 Score=87.46 Aligned_cols=201 Identities=22% Similarity=0.306 Sum_probs=126.0
Q ss_pred ceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh-------hcCCCChh-----------
Q psy9976 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHS-------FAGVPCGI----------- 158 (349)
Q Consensus 97 g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~-------~~G~~~G~----------- 158 (349)
+-.+.+..-||.|.|+|||++..+|-....++...+.+ ++......+.-+|+. ++|.-+|.
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGl-sk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~ 172 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGL-SKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAK 172 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCC-ccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhh
Confidence 45677788899999999999999998877777666655 554444444444431 11111110
Q ss_pred -----hHHHH-HHhccCCeEEEEe-cCCCee-EEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhcc
Q psy9976 159 -----MDQYV-SVMGEEGSALLID-CKTHEA-RHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSF 230 (349)
Q Consensus 159 -----~D~~a-~~~gg~~~~~~~d-~~~~~~-~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l 230 (349)
.|... ...|| ..++. ..+.+. +++.+|..++++++++.+.....|... +..|..
T Consensus 173 ~~~~~ad~ilp~~~gg---~~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k~------------R~vLPt--- 234 (355)
T KOG1537|consen 173 VSGYHADNILPAIMGG---FVLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKKM------------RAVLPT--- 234 (355)
T ss_pred hcCCCHHHhcccccCC---eeeecCCCcccccccccCCCCccceEEEEeccccccchhh------------hhhcCc---
Confidence 13222 55555 23333 445555 556666656899999999988777521 223321
Q ss_pred CCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHH-HHHHH-HHHhhhcccCCCChhHHHHHH
Q psy9976 231 RDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEG-DFETFG-KLMNE-SHDSLRDDYEVSCKELDDIAH 307 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~-d~~~lg-~lm~~-s~~~lr~~~~vs~p~ld~l~~ 307 (349)
.|.+..|++ +.+|...+..|+.++ |-..++ .+|.+ -|+..|. --.|-++.+..
T Consensus 235 --------------------~yp~~d~V~-NlqrlA~LttAl~~~p~n~~L~y~~m~DkvhqPyRa---~LIPGl~~il~ 290 (355)
T KOG1537|consen 235 --------------------EYPMVDHVW-NLQRLAALTTALLEGPDNVMLGYALMSDKVHQPYRA---PLIPGLEAILK 290 (355)
T ss_pred --------------------cccceeeee-cHHHHHHHHHHHhcCCCchhhhhhhhhccccCcccc---ccCccHHHHHH
Confidence 123344444 456777778888877 544444 45542 4444444 35688999998
Q ss_pred HHHc--CCCCeEEEecccCccceeEEEeCCCchhhhhh
Q psy9976 308 CAQS--LPGVLGCRMTGGGFGGCAIALVSPLNLRRGRK 343 (349)
Q Consensus 308 ~a~~--~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~ 343 (349)
.+.. ++|.+|.-++||| .+++++.. ++-+++..
T Consensus 291 ~~~p~t~pGl~GiclSGAG--PT~lAlat-enf~eI~~ 325 (355)
T KOG1537|consen 291 AALPATYPGLFGICLSGAG--PTALALAT-ENFQEIGE 325 (355)
T ss_pred hhCcccCCceeeEEecCCC--CeeEEEec-CcHHHHHH
Confidence 8877 2499999999998 99999987 44555443
No 60
>KOG2833|consensus
Probab=98.61 E-value=7.3e-06 Score=75.34 Aligned_cols=141 Identities=21% Similarity=0.209 Sum_probs=88.2
Q ss_pred eEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH-HHhccCCeEEEEe
Q psy9976 98 FNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV-SVMGEEGSALLID 176 (349)
Q Consensus 98 ~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a-~~~gg~~~~~~~d 176 (349)
+.|.-.+|.|..+||.||||=-+|++.+|+.+|+++. +++++-.+|++. ||. ++ ++||| ++...
T Consensus 106 lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~-~~~els~iAR~G--------SGS---ACRSl~GG---~V~W~ 170 (395)
T KOG2833|consen 106 LHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDD-SPEELSRIARQG--------SGS---ACRSLYGG---FVAWE 170 (395)
T ss_pred EEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCC-CHHHHHHHHhcc--------Cch---hhhhhhcc---eeEee
Confidence 5555666899999999999999999999999999999 999998888853 332 23 78999 55552
Q ss_pred ------cCC-CeeEEeeCCCCCCeEEEE-EeCCCCcccC-hhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccC
Q psy9976 177 ------CKT-HEARHIPLGDDHQYVFLI-INSNVHHELS-SSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLL 247 (349)
Q Consensus 177 ------~~~-~~~~~l~~~~~~~~~~ll-~~s~~~~~~~-~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l 247 (349)
... ..++..|-..=|++++++ +-+.....+. ++.+..-+ +.
T Consensus 171 mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sv----eT-------------------------- 220 (395)
T KOG2833|consen 171 MGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSV----ET-------------------------- 220 (395)
T ss_pred cccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHH----HH--------------------------
Confidence 111 223333321115666443 3344433332 11111000 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy9976 248 SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMN 285 (349)
Q Consensus 248 ~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~ 285 (349)
+.-+..|+.+++- +|..++.+|+++.||+.|.++.-
T Consensus 221 S~L~qhRi~~vVP--~Ri~~m~eaI~~rDF~~FA~lTm 256 (395)
T KOG2833|consen 221 SQLLQHRIESVVP--QRIQQMREAIRERDFESFAKLTM 256 (395)
T ss_pred hHHHHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHH
Confidence 1112234444432 46889999999999999999754
No 61
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=97.31 E-value=0.00015 Score=49.65 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=23.3
Q ss_pred hhhhceeeeCCcEEEecccccceEEEEEEec
Q psy9976 10 LLKSLMVKKRLQWIIMMDVRQVVTVLLGSRN 40 (349)
Q Consensus 10 ~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~ 40 (349)
|.|| |+|+++|+|||+ |||+.+++++++|
T Consensus 24 liGe-HtDy~gG~Vl~~-Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 24 LIGE-HTDYNGGFVLPA-AIDLRTYVAVSPR 52 (52)
T ss_dssp EE-T-T-GGGT-EEEEE-EEEEEEEEEEEEE
T ss_pred ecCc-ccccCCCeEEEE-EeeccEEEEEEcC
Confidence 4555 789999999999 9999999999886
No 62
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=47.06 E-value=21 Score=25.22 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 297 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 297 vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
++.+.+..|.++++++ |..-.|+|... +..+--++.+.++++.+.|
T Consensus 21 i~~~~l~~la~ia~~y-g~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L 66 (69)
T PF03460_consen 21 ISAEQLRALAEIAEKY-GDGEIRLTTRQ--NLQLRGVPEENLPAIFEEL 66 (69)
T ss_dssp EEHHHHHHHHHHHHHH-STSEEEEETTS--CEEEEEEEGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHh-CCCeEEECCCC--eEEEeCCCHHHHHHHHHHH
Confidence 4666799999999994 87889999875 7788879999999988765
No 63
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=39.91 E-value=2.1e+02 Score=23.52 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHHHHHH----HHHHHHHhcCCHHHHHHHHHHH---HHhhhcccCCCChhHHHHHHHHH
Q psy9976 246 LLSDEEYKRGHHVVTEIDRT----YKGANALKEGDFETFGKLMNES---HDSLRDDYEVSCKELDDIAHCAQ 310 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv----~~~~~al~~~d~~~lg~lm~~s---~~~lr~~~~vs~p~ld~l~~~a~ 310 (349)
..+.+..+|-..++.+.... ....+.+. |.+.+..+-+.. ...|++.++++..-+|.|++.|+
T Consensus 62 e~p~e~~~kr~~Vl~~l~~l~~~~~~v~~~~~--~~ev~~~l~~dk~~nl~~L~~~h~it~e~id~LY~~ak 131 (133)
T PF09440_consen 62 EVPAELAEKREEVLAELKELEEETEPVLELLE--DPEVVKNLRSDKKQNLEYLEENHGITPEMIDALYKYAK 131 (133)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CHHHHHHHHccHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 34666666666666655433 33333333 334444443332 23355568999999999998875
No 64
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=39.09 E-value=2.9e+02 Score=25.29 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q psy9976 122 TYTFLESITDEKTLKLTDKALACQEAEHSF 151 (349)
Q Consensus 122 ~~~al~~~~~~~~~~~~~l~~~a~~~E~~~ 151 (349)
++.++++++|++. +.+.|.+.|..+|...
T Consensus 192 vve~lnk~~~l~V-~td~L~keAe~i~~~l 220 (244)
T COG1938 192 VVEALNKMLGLNV-DTDKLEKEAEEIEEQL 220 (244)
T ss_pred HHHHHHHHhcCcc-CHHHHHHHHHHHHHHH
Confidence 4568999999998 9888888888877643
No 65
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=34.49 E-value=1.7e+02 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q psy9976 116 AALEVATYTFLESITDEKTLKLTDKALACQEAEHS 150 (349)
Q Consensus 116 aA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~ 150 (349)
.-.+.+++.+|++++|+++ |.++|.+.|.++|..
T Consensus 127 P~AA~alL~~L~kllgl~v-d~~~L~e~Ae~ie~~ 160 (188)
T TIGR00162 127 PKAAKAVLEVLCKMLSLEV-SVEALEERAKEMEKI 160 (188)
T ss_pred hHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHH
Confidence 4446677888999999999 999999988888754
No 66
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.17 E-value=2.7e+02 Score=26.97 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHc
Q psy9976 265 TYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311 (349)
Q Consensus 265 v~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~ 311 (349)
..++.+++.++|.++|-+++.+++..+.+.-.-.-++.+.+++...+
T Consensus 324 l~~l~~~l~~~d~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T PRK11199 324 FGEALELLEQGDKQAFIDSFRKVEHWFGDYAEQFLKESRSLLQQAND 370 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 67888899999999999999998776654222233455666665543
No 67
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=25.50 E-value=64 Score=24.16 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=13.8
Q ss_pred CCCCCCCCChHHHHHHHHH
Q psy9976 105 SVPMGSGLSSSAALEVATY 123 (349)
Q Consensus 105 ~iP~g~GLgSSaA~~vA~~ 123 (349)
++|+|.||.|=-+++-+++
T Consensus 61 ~LPPGGGl~sKr~~Ie~vy 79 (81)
T PF07830_consen 61 GLPPGGGLASKRSVIEAVY 79 (81)
T ss_dssp S--TTTTCGGGHHHHHHHH
T ss_pred CCcCCcCHHHHHHHHHHHh
Confidence 6899999999888876654
No 68
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=25.07 E-value=6.1e+02 Score=24.23 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhhhcccCCCC---hhHHHHHHHHHcCCCCeEEEecccCccceeEEE
Q psy9976 277 FETFGKLMNESHDSLRDDYEVSC---KELDDIAHCAQSLPGVLGCRMTGGGFGGCAIAL 332 (349)
Q Consensus 277 ~~~lg~lm~~s~~~lr~~~~vs~---p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l 332 (349)
.-.++++.......++. ++++. .++-..++.... .|.+..+..|.|..|-.--+
T Consensus 315 ~~~~~~i~~~y~~l~~~-~~~~~~~~~~~~~~l~~L~~-~glI~~~~~~~g~~g~~~~~ 371 (394)
T PRK00411 315 EVTTGEVYEEYKELCEE-LGYEPRTHTRFYEYINKLDM-LGIINTRYSGKGGRGRTRLI 371 (394)
T ss_pred cccHHHHHHHHHHHHHH-cCCCcCcHHHHHHHHHHHHh-cCCeEEEEecCCCCCCeEEE
Confidence 34567777665554443 55543 667777777777 59888888877754443333
No 69
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=24.82 E-value=3.1e+02 Score=21.34 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHh---cCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhh
Q psy9976 82 KGVVSIFND---RVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESIT 130 (349)
Q Consensus 82 ~~~~~~l~~---~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~ 130 (349)
+++...+.. .|+++.++.+++... +...+-++.+++..|...|+...+
T Consensus 62 ~g~~~a~~~Gpl~G~pv~~v~V~l~~~-~~~~~~s~~~~~~~aa~~a~~~al 112 (116)
T cd01434 62 KGFREALEKGPLAGYPVVDVKVTLYDG-SYHDVDSSEMAFKIAARMAFKEAF 112 (116)
T ss_pred HHHHHHHhcCcccCCccccEEEEEEec-eeecCCCCHHHHHHHHHHHHHHHH
Confidence 455555543 266788999999854 556677788999888888877654
No 70
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=24.49 E-value=63 Score=30.59 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=39.3
Q ss_pred cCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhcc
Q psy9976 295 YEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 295 ~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
.-+|++.|..+++.|.++ |.-..++|+-+ |.-|-..+.++++++...|+
T Consensus 40 g~l~~e~Lr~i~diAeky-G~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 40 GFLSAETLRKIADIAEKY-GDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred CccCHHHHHHHHHHHHHh-CCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 345777899999999994 87789999886 77777788888888777664
No 71
>PF12208 DUF3601: Domain of unknown function (DUF3601); InterPro: IPR022020 This domain family is found in bacteria, and is approximately 80 amino acids in length. ; PDB: 3G1J_B.
Probab=23.31 E-value=12 Score=27.75 Aligned_cols=26 Identities=4% Similarity=0.061 Sum_probs=20.8
Q ss_pred HHhhhhhceeeeCCcEEEecccccceE
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVT 33 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~ 33 (349)
++++|+.|+.-+.+|++|-. +.|+.+
T Consensus 29 ~~~fa~~~f~pY~~g~tL~i-s~ek~I 54 (78)
T PF12208_consen 29 IWYFACVYFLPYEDGYTLYI-SSEKTI 54 (78)
T ss_dssp EEEEEEEEEETTTTEEEEEE-TEEEEE
T ss_pred EEEEeeccCceEcCceEEEE-ecCceE
Confidence 36788999999999999977 777733
No 72
>PF11815 DUF3336: Domain of unknown function (DUF3336); InterPro: IPR021771 This family of proteins is characterised by an N-terminal domain that is found adjacent to the patatin/phospholipase A2-related domain (see PF01734 from PFAM). The family of proteins, which contain these two domains, have been characterised in Saccharomyces cerevisiae (Baker's yeast) as a bifunctional enzyme with triacylglycerol lipase and lysophosphatidic acid acyltransferase or lysophosphatidylethanolamine acyltransferase activity. They are generally involved in triacylglycerol mobilisation and localized to lipid particles [, ].
Probab=21.97 E-value=1.9e+02 Score=23.99 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhH
Q psy9976 264 RTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKEL 302 (349)
Q Consensus 264 rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~l 302 (349)
|+..+..+-.++|+..+-.++... ..|+..++++|.|
T Consensus 62 rl~~L~~aR~~~d~~~l~~~Lr~~--l~RNlggi~n~~L 98 (145)
T PF11815_consen 62 RLRELREARQSGDIEALMFLLRTG--LHRNLGGIGNPRL 98 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH--HhcCccccCCHHH
Confidence 467888888899999988888753 5666678888865
Done!