Query psy9976
Match_columns 349
No_of_seqs 165 out of 1787
Neff 8.2
Searched_HMMs 29240
Date Sat Aug 17 00:30:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9976.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9976hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 7E-63 2.4E-67 490.5 32.9 328 8-345 48-485 (520)
2 1wuu_A Galactokinase; galactos 100.0 1.2E-54 4.2E-59 422.9 37.3 330 8-345 45-375 (399)
3 1pie_A Galactokinase; galactos 100.0 9.9E-54 3.4E-58 419.0 38.7 327 9-345 58-390 (419)
4 2a2c_A N-acetylgalactosamine k 100.0 1.1E-52 3.7E-57 417.7 34.8 326 9-345 65-444 (478)
5 2cz9_A Probable galactokinase; 100.0 5.4E-51 1.8E-55 390.0 32.0 317 7-345 9-325 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 6.2E-50 2.1E-54 384.0 19.9 297 7-346 11-320 (357)
7 3k17_A LIN0012 protein; protei 100.0 1.3E-44 4.5E-49 347.8 29.0 287 7-345 14-339 (365)
8 3gon_A Phosphomevalonate kinas 100.0 1.3E-44 4.5E-49 343.1 27.8 280 7-344 9-315 (335)
9 2pg9_A Phosphomevalonate kinas 100.0 4.1E-43 1.4E-47 334.2 25.7 276 7-345 11-318 (337)
10 1kvk_A MK, mevalonate kinase; 100.0 7.4E-43 2.5E-47 339.3 24.8 293 7-341 13-352 (395)
11 2x7i_A Mevalonate kinase; tran 100.0 1.2E-39 4.2E-44 306.2 24.8 277 7-345 14-293 (308)
12 4hac_A Mevalonate kinase; GHMP 100.0 3.7E-38 1.3E-42 298.2 30.7 273 7-345 29-301 (321)
13 1kkh_A Mevalonate kinase; mixe 100.0 3.5E-38 1.2E-42 297.5 24.9 282 7-346 13-304 (317)
14 2hfs_A Mevalonate kinase, puta 100.0 6.5E-37 2.2E-41 290.5 29.7 281 7-345 21-309 (332)
15 2oi2_A Mevalonate kinase; enzy 100.0 9.2E-37 3.2E-41 284.1 22.3 265 7-345 13-279 (292)
16 1h72_C HK, homoserine kinase; 100.0 5.4E-32 1.8E-36 252.6 24.7 254 23-345 20-277 (296)
17 3hul_A HSK, HK, homoserine kin 100.0 1.2E-26 4.3E-31 216.8 24.4 247 23-346 20-268 (298)
18 2gs8_A Mevalonate pyrophosphat 100.0 8.4E-27 2.9E-31 219.8 21.8 267 14-345 22-300 (317)
19 3pyf_A 4-diphosphocytidyl-2-C- 99.9 4.9E-26 1.7E-30 213.5 21.9 250 18-345 24-278 (306)
20 3qt5_A Mevalonate diphosphate 99.9 1.1E-24 3.7E-29 206.5 21.8 271 14-345 23-309 (332)
21 2v8p_A 4-diphosphocytidyl-2-C- 99.9 1.6E-25 5.5E-30 206.6 14.6 226 22-341 31-258 (271)
22 1uek_A 4-(cytidine 5'-diphosph 99.9 1.4E-23 4.9E-28 193.8 16.8 228 22-346 27-255 (275)
23 2ww4_A 4-diphosphocytidyl-2C-m 99.9 7.1E-24 2.4E-28 196.7 14.2 236 11-345 18-261 (283)
24 1fi4_A Mevalonate 5-diphosphat 99.9 1.1E-20 3.7E-25 184.2 23.4 219 78-344 92-342 (416)
25 2hke_A Diphosphomevalonate dec 99.8 6.7E-18 2.3E-22 162.8 25.5 249 23-344 36-313 (380)
26 3lto_A Mevalonate diphosphate 99.7 3.5E-16 1.2E-20 146.7 22.9 208 80-345 79-304 (323)
27 3f0n_A Mevalonate pyrophosphat 99.7 3.3E-15 1.1E-19 143.3 21.9 199 96-345 122-340 (414)
28 3myf_A Sensor protein; HPT, hi 38.8 1.3E+02 0.0043 22.8 8.8 44 265-311 37-80 (119)
29 3iqt_A Signal transduction his 38.3 1.1E+02 0.0038 23.3 7.2 44 265-311 46-89 (123)
30 1rzw_A Protein AF2095(GR4); be 24.8 83 0.0029 24.3 4.3 52 295-347 53-113 (123)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=7e-63 Score=490.51 Aligned_cols=328 Identities=28% Similarity=0.407 Sum_probs=273.7
Q ss_pred HhhhhhceeeeCCcEEEecccccceEEEEEEec--CCCeEEEEecCCCCCCCCceEEeCCCcc---cCCCCCcCHhHHHH
Q psy9976 8 LYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRN--NSNQIHLHSDSARADKPTDISFDIPKVQ---KLTPGAPKWANYVK 82 (349)
Q Consensus 8 l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~--~d~~i~v~s~~~~~~~~~~~~~~l~~~~---~l~~~~~~w~~~v~ 82 (349)
+.|+|| |+|++||+|||| |||++++++++++ +|+.|+|+|.+.. ....+|+++.+. .+.+..+.|+||++
T Consensus 48 VnLiGE-HtDyngG~VLp~-AI~~~~~vav~~~~~~d~~i~i~S~~~~---~~~~~~~l~~~~~~~~i~~~~~~W~~Yv~ 122 (520)
T 3v2u_C 48 VNLIGE-HIDYCDFSVLPL-AIDVDMLCAVKILDEKNPSITLTNADPK---FAQRKFDLPLDGSYMAIDPSVSEWSNYFK 122 (520)
T ss_dssp EEEECT-TCGGGTCCBEEE-EEEEEEEEEEEECCCSSCEEEEEESSTT---SCCEEEECCTTCCCCCCCTTSCCHHHHHH
T ss_pred EEEecc-CeeeCCCEEEEE-EeecceEEEEEeccCCCCEEEEEECCCC---CCceEEEeccCccccccCcccccHHHHHH
Confidence 457788 467899999999 9999999999998 8999999998742 224567763110 23344568999999
Q ss_pred HHH----HHHHhc------CCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHH
Q psy9976 83 GVV----SIFNDR------VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESIT---DEKTLKLTDKALACQEAEH 149 (349)
Q Consensus 83 ~~~----~~l~~~------~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~---~~~~~~~~~l~~~a~~~E~ 149 (349)
+++ +.+++. +.+..||++.|.|+||+|+|| |||++||++.|+..++ +.++ ++.+++++|+++|+
T Consensus 123 g~i~~v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l-~~~~la~la~~aE~ 199 (520)
T 3v2u_C 123 CGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDI-SKKDLTRITAVAEH 199 (520)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCC-BHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHH
Confidence 865 345442 446789999999999999999 9999999999999998 7778 99999999999998
Q ss_pred hhcCCCChhhHHHHHHhccCCeEEEEecCC-CeeEEeeCCC--CCCeEEEEEeCCC---CcccChhhHHHHHHHHHHHHH
Q psy9976 150 SFAGVPCGIMDQYVSVMGEEGSALLIDCKT-HEARHIPLGD--DHQYVFLIINSNV---HHELSSSEYAVRRAQCKSVLD 223 (349)
Q Consensus 150 ~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~-~~~~~l~~~~--~~~~~~ll~~s~~---~~~~~~~~y~~r~~~~~~a~~ 223 (349)
++|.|||+|||+++++|++|+++++||++ ++++++|+|. .+++.|+|++|++ ++.+.+++||.||.||+.|++
T Consensus 200 -~vG~~~G~mDQ~as~~G~~g~~l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~ 278 (520)
T 3v2u_C 200 -YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAAN 278 (520)
T ss_dssp -GGTCCCCSHHHHHHHHCBTTBEEEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHH
T ss_pred -HhCCCCchhhHHHHHhCCCCeEEEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999873 1489999999999 788889999999999999999
Q ss_pred Hhchh-----------------ccCCCCHH---------------------HHHHH-------Hhcc-------------
Q psy9976 224 KLHRV-----------------SFRDVSLK---------------------SLEDK-------HAQK------------- 245 (349)
Q Consensus 224 ~l~~~-----------------~l~~~~~~---------------------~~~~~-------~~~~------------- 245 (349)
+|++. +||+++.+ +++.. +...
T Consensus 279 ~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l 358 (520)
T 3v2u_C 279 ALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTAL 358 (520)
T ss_dssp HHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHT
T ss_pred HHHHhhCCcccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhh
Confidence 99642 35544211 01000 0000
Q ss_pred cCC-H-----------------HHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhhhcccCCCCh
Q psy9976 246 LLS-D-----------------EEYKRGHHVVTEIDRTYKGANALKEG-------DFETFGKLMNESHDSLRDDYEVSCK 300 (349)
Q Consensus 246 ~l~-~-----------------~~~~r~~~~i~e~~rv~~~~~al~~~-------d~~~lg~lm~~s~~~lr~~~~vs~p 300 (349)
.++ + .+++|++|+++|++||.+++++|+++ |++.||++|+++|.+||++|++|||
T Consensus 359 ~~~~~~l~~~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~p 438 (520)
T 3v2u_C 359 NCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCI 438 (520)
T ss_dssp TSCHHHHHHHHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCH
T ss_pred cCChhhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 011 1 36899999999999999999999997 5999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCeEEEecccCccceeEEEe---CCCchhhhhhhc
Q psy9976 301 ELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV---SPLNLRRGRKKK 345 (349)
Q Consensus 301 ~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~---~~~~~~~~~~~~ 345 (349)
+||.|+++|++ .|++|+||||||||||+|+|+ +++.++++++.+
T Consensus 439 eld~lv~~a~~-~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l 485 (520)
T 3v2u_C 439 ETNQICSIALA-NGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKAL 485 (520)
T ss_dssp HHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHH
Confidence 99999999999 699999999999999999999 888888887764
No 2
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.2e-54 Score=422.86 Aligned_cols=330 Identities=49% Similarity=0.862 Sum_probs=285.8
Q ss_pred HhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccC-CCCCcCHhHHHHHHHH
Q psy9976 8 LYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKL-TPGAPKWANYVKGVVS 86 (349)
Q Consensus 8 l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l-~~~~~~w~~~v~~~~~ 86 (349)
+.++||+.. +++|.+|++ |||+++++++++++++.+++.+.++........+|+++..+.+ .+....|.||+++++.
T Consensus 45 v~L~Geh~D-y~~~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~v~~a~~ 122 (399)
T 1wuu_A 45 VNLIGEHTD-YNQGLVLPM-ALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQ 122 (399)
T ss_dssp EEEECTTCG-GGTCEEEEE-EEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCCCCCCSSGGGHHHHHHHH
T ss_pred EEEeccccc-cCCCEEEeE-EecccEEEEEEECCCCeEEEEECCCCCccccceEEecCccccccccCCCCHHHHHHHHHH
Confidence 346789874 899999999 9999999999999888999999864211011234555411111 1224579999999999
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+ .+...+|+++.+.|+||+|+|||||||++||++.|++++++.++ ++++++++|+++|+.++|.|||+|||+++++
T Consensus 123 ~l--~~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l-~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~ 199 (399)
T 1wuu_A 123 YY--PAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSG-TIAARAQVCQQAEHSFAGMPCGIMDQFISLM 199 (399)
T ss_dssp HC--SSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCS-CHHHHHHHHHHHHHHHTCCCCCSHHHHHHHH
T ss_pred Hh--cCCCCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHHh
Confidence 88 34456899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
||.+.++++|+.+..++++|++. +++.++|++|+++++|....||.|+.+|+.+.++|+.+.+++.+.+++... .+.
T Consensus 200 Gg~~~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~--~~~ 276 (399)
T 1wuu_A 200 GQKGHALLIDCRSLETSLVPLSD-PKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAA--RDL 276 (399)
T ss_dssp CCTTEEEEEETTTCCEEEEECCC-SSEEEEEEEEEEEC--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTG--GGG
T ss_pred ccCCeEEEEecCCCceEEecCCC-CCeEEEEEECCCccccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHH--Hhh
Confidence 99988899999888889998874 589999999999999988899999999999999999888888888877665 556
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+++..++|+.|.+.|++|+.+++++|+++|++.||++|+++|+++++.+++++|+++.+++.+++..|++|+||||||||
T Consensus 277 l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sGaG~G 356 (399)
T 1wuu_A 277 VSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFG 356 (399)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECSSCSE
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeecCCCc
Confidence 78888899999999999999999999999999999999999999998899999999999999998339999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++.+.+
T Consensus 357 g~v~~l~~~~~~~~~~~~l 375 (399)
T 1wuu_A 357 GCTVTLLEASAAPHAMRHI 375 (399)
T ss_dssp EEEEEEEEGGGHHHHHHHH
T ss_pred cEEEEEEccchHHHHHHHH
Confidence 9999999988778777654
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=9.9e-54 Score=418.98 Aligned_cols=327 Identities=33% Similarity=0.507 Sum_probs=283.3
Q ss_pred hhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHH
Q psy9976 9 YLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 88 (349)
Q Consensus 9 ~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l 88 (349)
.++||+. |.+||.+|++ |||+++++++++++++.+++.+.++. +....+|++++. ..+....|.||+++++..+
T Consensus 58 ~L~Geh~-d~~G~~~l~~-aI~l~~~v~v~~~~~~~i~i~~~~~~--~~~~~~~~~~~~--~~~~~~~~~n~v~~~~~~l 131 (419)
T 1pie_A 58 NLIGEHT-DYNGGYVFPA-SITIGTTGLARLREDKKVKLYSENFP--KLGVIEFDLDEV--EKKDGELWSNYVKGMIVML 131 (419)
T ss_dssp EEECCSC-TTTTCEEEEE-EEEEEEEEEEEECSSSEEEEEETTCG--GGCCEEEETTCT--TSCCTTCTHHHHHHHHHHH
T ss_pred EEcccce-eeCCCEEEEE-EEcccEEEEEEECCCCEEEEEECCCC--CcceeEEecccc--cCCCCcCHHHHHHHHHHHH
Confidence 4567864 5688999999 99999999999988888999887631 012345665421 0122368999999999999
Q ss_pred HhcCCCC-CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhc
Q psy9976 89 NDRVAPV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167 (349)
Q Consensus 89 ~~~~~~~-~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~g 167 (349)
.+.+... .|++|.|.|+||+|+|||||||++||++.|++++++.++ ++++++++|+++|+.++|.|||+|||++++||
T Consensus 132 ~~~g~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~l-s~~el~~la~~~E~~~~G~~~G~~D~~~~~~G 210 (419)
T 1pie_A 132 KGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNV-PRLELVQLGQKTENDYIGVNSGILDQFAIGFG 210 (419)
T ss_dssp HHTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHC
T ss_pred HHhCCCCCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCccchhHHHHHhc
Confidence 8766555 799999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhc----hhccCCCCHHHHHHHHh
Q psy9976 168 EEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLH----RVSFRDVSLKSLEDKHA 243 (349)
Q Consensus 168 g~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~----~~~l~~~~~~~~~~~~~ 243 (349)
|.+.++++|+.+..++++|+|. +++.++|++|+++++|.+..||.||.+|++|.++|+ ...+++.+++++.++
T Consensus 211 g~~~~~~~d~~~~~~~~l~~~~-~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~-- 287 (419)
T 1pie_A 211 EVKKAIELDCNTLKYEMVPVEL-RDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDAN-- 287 (419)
T ss_dssp BTTEEEEEETTTCCEEEEECCC-TTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHT--
T ss_pred cCCeEEEeecCCCceEEeecCC-CCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhhccccCchhhCCHHHHHHH--
Confidence 9988999999888899998874 589999999999999988999999999999999997 456777777777655
Q ss_pred cccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecc
Q psy9976 244 QKLL-SDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTG 322 (349)
Q Consensus 244 ~~~l-~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltG 322 (349)
.+.+ ++..++|+.|++.|+.|+.+++++|+++|++.||++|+++|.++++.|++++|+++.+++.+++.+|++|+||||
T Consensus 288 ~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsG 367 (419)
T 1pie_A 288 TDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTG 367 (419)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECS
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEec
Confidence 4445 345678899999999999999999999999999999999999999989999999999999999933999999999
Q ss_pred cCccceeEEEeCCCchhhhhhhc
Q psy9976 323 GGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 323 aG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
||||||+++|++++.++++++.+
T Consensus 368 aG~Gg~v~al~~~~~a~~~~~~l 390 (419)
T 1pie_A 368 AGFGGCAIALVAHDNVSAFRKAV 390 (419)
T ss_dssp SCSSSEEEEEEEGGGHHHHHHHH
T ss_pred CCCCeEEEEEEchhhHHHHHHHH
Confidence 99999999999988777776654
No 4
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=1.1e-52 Score=417.66 Aligned_cols=326 Identities=25% Similarity=0.390 Sum_probs=263.5
Q ss_pred hhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHH
Q psy9976 9 YLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIF 88 (349)
Q Consensus 9 ~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l 88 (349)
.++||+ .|++|+.||++ |||+++++++++++++.++|.+.+.. ....++++++. .....+..|.||++.++..+
T Consensus 65 ~L~Geh-~D~~g~~vl~~-AI~~~~~v~v~~~~~~~i~i~~~~~~---~~~~~~~~~~l-~~~~~~~~~~n~v~~a~~~v 138 (478)
T 2a2c_A 65 NIIGEH-IDYCGYSVLPM-AVEQDVLIAVEPVKTYALQLANTNPL---YPDFSTSANNI-QIDKTKPLWHNYFLCGLKGI 138 (478)
T ss_dssp EEECTT-CGGGTCCBEEE-EEEEEEEEEEEECSSSCEEEEESSTT---SCCEEECCCCC---CCSSCCHHHHHHHHHHHH
T ss_pred EEeccc-eeeCCCeEEEE-EecccEEEEEEECCCCeEEEEECCCC---Ccceeccchhc-ccCCCcccHHHHHHHHHHHH
Confidence 456886 56789999999 99999999999998889999987632 11223333311 11123568999996555443
Q ss_pred HhcCC--CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 89 NDRVA--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 89 ~~~~~--~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+... ...||++.|.|+||+|+|||||||++||++.|++.+++.++ ++++++++|+++|+ +.|.|+|+|||+++++
T Consensus 139 ~~~~~~~~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~l-s~~~l~~la~~~E~-~~g~~~g~~D~~a~~~ 216 (478)
T 2a2c_A 139 QEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNL-SKVELAEICAKSER-YIGTEGGGMDQSISFL 216 (478)
T ss_dssp HHHTTCCSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHG-GGTCCCCSHHHHHHHH
T ss_pred HHHHhccCCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-hcCCCCccHHHHHHHh
Confidence 32211 25799999999999999999999999999999999999999 99999999999997 7899999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCccc-ChhhHHHHHHHHHHHHHHhchh---------ccCCC---
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHEL-SSSEYAVRRAQCKSVLDKLHRV---------SFRDV--- 233 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~-~~~~y~~r~~~~~~a~~~l~~~---------~l~~~--- 233 (349)
|++|++++++|.+..++++|+| +++.|+|++|++++++ .+..||.||.||+.|+++|+++ .++++
T Consensus 217 G~~g~~~~i~f~~~~~~~~~~~--~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~~~~~~~~~~~~~l~d~~~~ 294 (478)
T 2a2c_A 217 AEEGTAKLIEFSPLRATDVKLP--SGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAK 294 (478)
T ss_dssp CBTTBEEEEETTTTEEEEECCC--TTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHHHHTTCCTTTCCCHHHHHHH
T ss_pred ccCCcEEEEEcCCCceEEecCC--CCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHHhhhcccccccchHHhhhhh
Confidence 9777899999999888888887 4899999999999975 3589999999999999999854 12221
Q ss_pred ---------------------CHHHHHHHHh-------cccCC--------HHHHHHHHHHHHHHHHHHHHHHHHhc---
Q psy9976 234 ---------------------SLKSLEDKHA-------QKLLS--------DEEYKRGHHVVTEIDRTYKGANALKE--- 274 (349)
Q Consensus 234 ---------------------~~~~~~~~~~-------~~~l~--------~~~~~r~~~~i~e~~rv~~~~~al~~--- 274 (349)
+.+++.+.++ ...++ ...++|+.|++.|+.|+.+++++|++
T Consensus 295 ~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~~ 374 (478)
T 2a2c_A 295 LGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPE 374 (478)
T ss_dssp HTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1111111000 00001 13567899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 275 GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 275 ~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+|++.||++|+++|.++|++|++|||++|.|++.+++ .|++|+||||||||||+++|++++.++++++.+
T Consensus 375 ~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l 444 (478)
T 2a2c_A 375 NMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMVPADKLPSFLANV 444 (478)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCccEEEEEEcHHHHHHHHHHH
Confidence 9999999999999999999899999999999999999 699999999999999999999998888777654
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=5.4e-51 Score=390.01 Aligned_cols=317 Identities=31% Similarity=0.471 Sum_probs=270.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++||+.. .++|.+|++ |||+++++.+++++++.+++.+... ....+| ++ .+..+.|.||+++++.
T Consensus 9 ki~L~Ge~~d-~~~~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~----~~~~~~-l~-----~~~~~~~~~~~~~~~~ 76 (350)
T 2cz9_A 9 RVNLIGEHTD-YTYGYVMPM-AINLYTKIEAEKHGEVILYSEHFGE----ERKFSL-ND-----LRKENSWIDYVKGIFW 76 (350)
T ss_dssp EEEEECTTCG-GGTCEEEEE-EEEEEEEEEEEEESSEEEEETTTTE----EEEECT-TC-----CCCCSSTHHHHHHHHH
T ss_pred EEEEeecChh-hCCCEEEEE-EeeceEEEEEEECCCCeEEEEECCC----Cccccc-cC-----CCCCCcHHHHHHHHHH
Confidence 3456788765 789999999 9999999999988777788765442 001111 21 0124579999999998
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+...+|++|.+.|+||+|+|||||||++||++.|++++++.++ ++++++++|.++|..++|.|+|+||++++++
T Consensus 77 ~l~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l-~~~el~~la~~~e~~~~g~~~gi~d~~~~~~ 155 (350)
T 2cz9_A 77 VLKESDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKL-DSLSKVLLAKKAENEFVGVPCGILDQFAVVF 155 (350)
T ss_dssp HHHHTTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCCCCSHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCccchhHHHHHh
Confidence 887766666899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|+.++++++|+.+..++++|++ ++++++|++|++++++.+..|+.|+.+|++|++.++.+.+|+.+.+++ ..
T Consensus 156 g~~~~~~~~d~~~~~~~~l~~~--~~~~~vl~~~~~~~~~~t~~~~~r~~~~~~a~~~~~~~~lr~~~~~~~------~~ 227 (350)
T 2cz9_A 156 GREGNVIFLDTHTLDYEYIPFP--KDVSILVFYTGVRRELASSEYAERKHIAEESLKILGKGSSKEVREGEL------SK 227 (350)
T ss_dssp CCTTEEEEEETTTCCEEEEECC--TTEEEEEEECSCC----CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGG------GG
T ss_pred cCCCeEEEEecCCCcEEEEcCC--CCcEEEEEECCCCCccccchHHHHHHHHHHHHHHhChhhhhhCCHHHH------hh
Confidence 9988899999988888999887 489999999999987777779999999999999998878887765443 12
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
+++..+++..|.+.|+.|+.++.++|.++|++.||++|+++|.++++.+++++|+++.+++.+++ .|++|+||||||||
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG~G 306 (350)
T 2cz9_A 228 LPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAGFG 306 (350)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSCSS
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCCCc
Confidence 46666678889999999999999999999999999999999999998899999999999999999 59999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++.+.+
T Consensus 307 ~~v~~l~~~~~~~~~~~~l 325 (350)
T 2cz9_A 307 GSAIALVDKEDAETIGEEI 325 (350)
T ss_dssp SEEEEEEEGGGHHHHHHHH
T ss_pred eEEEEEEchhhHHHHHHHH
Confidence 9999999987777666543
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.2e-50 Score=384.03 Aligned_cols=297 Identities=15% Similarity=0.163 Sum_probs=221.9
Q ss_pred HHhhhhhceeee------CCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHH
Q psy9976 7 RLYLLKSLMVKK------RLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANY 80 (349)
Q Consensus 7 ~l~~~~~~~~~~------~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~ 80 (349)
|+.++|| |+|+ ++|+|||+ |||+++++++++++|+.|+|.|.++ ....+|++++ .+ ....|.||
T Consensus 11 RvnL~Ge-htD~~~~~~~~gG~vl~~-AId~~~~v~i~~~~d~~i~i~s~~~----~~~~~~~~~~--~~--~~~~~~~~ 80 (357)
T 3k85_A 11 RLGLAGG-GSDVSPYSDIYGGLILNA-TINLYAYCTIEETNSGRIEINAYDA----QCCKSYLSMS--QL--EIDGEASL 80 (357)
T ss_dssp EEEEECT-TTTSTTHHHHTCEEEEEE-EEEEEEEEEEEECSSSEEEEEETTT----TEEEEEECCS--SC--CCCSSSHH
T ss_pred EEEEecC-CccCcchhhcCCCEEEEE-EEeCcEEEEEEECCCCeEEEEECCC----CceEEEeccc--cc--cccchHHH
Confidence 3456674 2333 89999999 9999999999999999999999875 2344566542 12 24679999
Q ss_pred HHHHHHHHHhcCCC-CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy9976 81 VKGVVSIFNDRVAP-VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIM 159 (349)
Q Consensus 81 v~~~~~~l~~~~~~-~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~ 159 (349)
++++++.+.+.+.. .+||++.+.++||+|+|||||||++||++.|++++++.++ ++++++++|+++|+.++|.|||+|
T Consensus 81 v~~~~~~l~~~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l-~~~~l~~~a~~~E~~~~G~~~G~~ 159 (357)
T 3k85_A 81 IKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPL-GDYETSRLAYEIERKDLGLSGGKQ 159 (357)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHTTTCCCCCSH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHccCCCcHH
Confidence 99999999887653 6799999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhccCCeEEEEecCCCeeEEeeCCCCC-----CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCC
Q psy9976 160 DQYVSVMGEEGSALLIDCKTHEARHIPLGDDH-----QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVS 234 (349)
Q Consensus 160 D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~-----~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~ 234 (349)
||++++|||...+.+.++.+..++++|++. . ++.++|++|+.++++. ++++... +
T Consensus 160 D~~a~~~Gg~~~~~~~~~~~~~~~~l~~~~-~~~~~l~~~lvi~~t~~~~~a~---------------~~l~~~~----~ 219 (357)
T 3k85_A 160 DQYAAAFGGFNYMEFLQNDLVIVNPLKMKR-WIVDELESSMVLYFTGRSRSSA---------------AIINEQK----K 219 (357)
T ss_dssp HHHHHHHCSEEEEEEETTTEEEEEEECCCH-HHHHHHHHTEEEECC----------------------------------
T ss_pred HHHHHHhCCceEEEEeCCCceeEEEEecCh-hhhhhcCceEEEEECCCcccHH---------------HHHHHHH----H
Confidence 999999999654445555666678887763 1 2578999999888753 2232100 0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc-cCCCChhHHHHHHHHHcCC
Q psy9976 235 LKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDD-YEVSCKELDDIAHCAQSLP 313 (349)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~-~~vs~p~ld~l~~~a~~~~ 313 (349)
.+ +. .+..+.++.|.+.+ ++.++++||+++|++.||++|+++|.++++. +++|+|++|.+++.+++ .
T Consensus 220 --~~------~~-~~~~~~~~~~~i~~--~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~-~ 287 (357)
T 3k85_A 220 --NT------SE-GNQTAIEAMHKIKQ--SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-A 287 (357)
T ss_dssp ---------------CCTTHHHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-S
T ss_pred --Hh------hc-CcHHHHHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-c
Confidence 00 00 00112456777766 5899999999999999999999999999986 89999999999999999 5
Q ss_pred CCeEEEecccCccceeEEEeCCCchhhhhhhcc
Q psy9976 314 GVLGCRMTGGGFGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 314 Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
||+|+||||||+|||+++|++++.++++++.++
T Consensus 288 Ga~GaklsGaG~gG~vial~~~~~~~~~~~~l~ 320 (357)
T 3k85_A 288 GAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALN 320 (357)
T ss_dssp CCSEEEECCCC---CEEEECCHHHHHHHHHHHH
T ss_pred CCeEeEecccCCCCEEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999888888876653
No 7
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=1.3e-44 Score=347.81 Aligned_cols=287 Identities=17% Similarity=0.165 Sum_probs=227.4
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||.+..+||.|||+ |||+++++++++++|. +|.|..++ ...+|+++. .+......| +|++++++
T Consensus 14 rv~L~GEh~~~~~g~~~l~~-Ai~~~~~v~v~~~~~~--~i~s~~~~----~~~~~~~~~--~~~~~~~~~-~yv~~~i~ 83 (365)
T 3k17_A 14 KLYVAGEYAVVESGHTAILT-AVNRYITLTLEDSERN--ELWIPHYE----NPVSWPIGG--ELKPDGEHW-TFTAEAIN 83 (365)
T ss_dssp EEEEECTTGGGSTTCEEEEE-EEEEEEEEEEEECSSC--EEECTTCS----SCBCCCTTS--CCCCSCGGG-HHHHHHHH
T ss_pred eEEEecccEEecCCCEEEEE-EccCcEEEEEEECCCc--EEEecCCC----cceeeeccc--CCCCCCChH-HHHHHHHH
Confidence 67899998877679999999 9999999999998876 57777652 233444432 122234568 99999988
Q ss_pred HHH----hcCCCCCceEEEEEeCCCC----CCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChh
Q psy9976 87 IFN----DRVAPVPGFNAVILSSVPM----GSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGI 158 (349)
Q Consensus 87 ~l~----~~~~~~~g~~i~i~s~iP~----g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~ 158 (349)
.+. +.+...+||++.|.|+||+ ++|||||||++||++.|++++++.++ ++++++++|+.+|+.++|.+ |.
T Consensus 84 ~~~~~~~~~g~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l-~~~~l~~~a~~~E~~~~g~~-~g 161 (365)
T 3k17_A 84 IATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEI-SMLKKFKLAALSHLVVQGNG-SC 161 (365)
T ss_dssp HHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHHHSSC-CS
T ss_pred HHHHHHHhcCCCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCC-Cc
Confidence 653 4566778999999999997 57999999999999999999999999 99999999999999999954 55
Q ss_pred hHHHHHHhccCCeEEEEe-cC----------------------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHH
Q psy9976 159 MDQYVSVMGEEGSALLID-CK----------------------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRR 215 (349)
Q Consensus 159 ~D~~a~~~gg~~~~~~~d-~~----------------------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~ 215 (349)
|||++++||| +++++ +. +..++++|++. + +++|++|+.+++|..
T Consensus 162 ~D~~~~~~Gg---~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~--~-~lll~~t~~~~sT~~------- 228 (365)
T 3k17_A 162 GDIASCMYGG---WIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPV--P-TFSVGWTGTPVSTGK------- 228 (365)
T ss_dssp HHHHHHHHCS---EEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCS--S-EEEEEECSCCCCHHH-------
T ss_pred ccHHHHhcCC---EEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCc--c-cEEEEECCCccchHH-------
Confidence 7999999999 66665 32 45677887764 6 899999999998641
Q ss_pred HHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc
Q psy9976 216 AQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEID-RTYKGANALKEGDFETFGKLMNESHDSLRDD 294 (349)
Q Consensus 216 ~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~-rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~ 294 (349)
+++.+.. . ++. .+ .+..+++.++. ++.+++++|+++|++.||++|+++|.+||+
T Consensus 229 -----~~~~v~~----------~-----~~~-~~---~~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~- 283 (365)
T 3k17_A 229 -----LVSQIHA----------F-----KQE-DS---KNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQE- 283 (365)
T ss_dssp -----HHHHHHH----------H-----HHH-CH---HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-
T ss_pred -----HHHHHHH----------H-----HHh-Ch---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-
Confidence 1111110 0 000 11 12456777764 589999999999999999999999999998
Q ss_pred cCC------CChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhhhhhhc
Q psy9976 295 YEV------SCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 295 ~~v------s~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~~~~~~ 345 (349)
+++ ++|++|.|++.+++ .|++ +||||||||||+++|++++ .++++++.+
T Consensus 284 l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l 339 (365)
T 3k17_A 284 LGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEW 339 (365)
T ss_dssp HHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHH
T ss_pred hhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHH
Confidence 665 99999999999999 5988 9999999999999999874 466666554
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=1.3e-44 Score=343.06 Aligned_cols=280 Identities=13% Similarity=0.085 Sum_probs=219.3
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||+|.++|+.+|++ |||+++++.++++++.+| ++..++. . +++. ..+..+-|.++++.+..
T Consensus 9 KviL~GEhaVv~~G~~Ala~-ai~~~~~v~i~~~~~~~i--~~~~~~~----~--~~~~----~~~~~~~~~~~i~~~~~ 75 (335)
T 3gon_A 9 KLYWAGEYAILEPGQLALIK-DIPIYMRAEIAFSDSYRI--YSDMFDF----A--VDLR----PNPDYSLIQETIALMGD 75 (335)
T ss_dssp EEEEECTTGGGSTTCEEEEE-EEEEEEEEEEEECSSCEE--EETTSSS----C--BCSS----CCTTTHHHHHHHHHHHH
T ss_pred EEEEEeeeeEEcCCCcEEEE-EecceEEEEEEECCCCEE--EEeCCCc----c--cccC----cCCCcHHHHHHHHHHHH
Confidence 78999999999999999999 999999999999877654 5554311 1 1111 01112235566777778
Q ss_pred HHHhcCCCCCceEEEEEeCCCCC---CCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMG---SGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV 163 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g---~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a 163 (349)
++.+.+...+||++.|.|++|.+ +|||||||++||++.+++++++.++ ++++++++|+.+|+.++|.||| |||++
T Consensus 76 ~l~~~~~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~-~~~~l~~la~~~E~~~~g~~sg-~D~a~ 153 (335)
T 3gon_A 76 FLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSV-DQNLLFKLTSAVLLKRGDNGSM-GDLAC 153 (335)
T ss_dssp HHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTTCCSCS-HHHHH
T ss_pred HHHHcCCCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccc-hHHHHHHHHHHHHHHhcCCCCC-CCcce
Confidence 88888888899999999999987 6999999999999999999999999 9999999999999999999988 79999
Q ss_pred HHhccCCeEEEEecC----------------------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHH
Q psy9976 164 SVMGEEGSALLIDCK----------------------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSV 221 (349)
Q Consensus 164 ~~~gg~~~~~~~d~~----------------------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a 221 (349)
++||| +++++.. ....++++.+ +++++++++++.+.+|.. +
T Consensus 154 a~~Gg---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~t~~------------~ 216 (335)
T 3gon_A 154 IAAED---LVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT--LECDFLVGWTKEVAVSSH------------M 216 (335)
T ss_dssp HHHTS---CEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC--SCCEEEEEECCCCCCHHH------------H
T ss_pred eecCC---eEEEEeCCccccceeecccchhheecccccceeEEcCCc--cccceEEeecCChhhHHH------------H
Confidence 99999 4555432 1234455444 478999999999887641 1
Q ss_pred HHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-ccCCCCh
Q psy9976 222 LDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRD-DYEVSCK 300 (349)
Q Consensus 222 ~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-~~~vs~p 300 (349)
++.+. ....+.. .....+++.++.++|+++|++.||++|+++|.+|++ .+++++|
T Consensus 217 v~~v~------------------~~~~~~~------~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p 272 (335)
T 3gon_A 217 VQQIK------------------QNINQNF------LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTP 272 (335)
T ss_dssp HHHHG------------------GGCCHHH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHH------------------HHhHHHH------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCH
Confidence 12121 1112221 122334589999999999999999999999999998 5689999
Q ss_pred hHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhhhhhh
Q psy9976 301 ELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRRGRKK 344 (349)
Q Consensus 301 ~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~~~~~ 344 (349)
++|.|++.|++ .|+ |+||||||||||+|+|++++ .+++++++
T Consensus 273 ~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~~~~~~~i~~~ 315 (335)
T 3gon_A 273 LLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFDAQSTKTLKNR 315 (335)
T ss_dssp HHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCc-EEEEccccchheEEEEECCHHHHHHHHHH
Confidence 99999999999 585 89999999999999999864 35555543
No 9
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=4.1e-43 Score=334.18 Aligned_cols=276 Identities=14% Similarity=0.152 Sum_probs=220.1
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|++|+|||.++++||.||++ |||++++++++++++ ++|.|..++ .. ++.. + +..| +|++++++
T Consensus 11 kv~L~GeH~v~y~G~~~l~~-Ai~~~~~v~v~~~~~--~~i~s~~~~----~~--~~~~------~-~~~~-~~v~~~i~ 73 (337)
T 2pg9_A 11 KLYWAGEYAILEPGQLALIK-DIPIYMRAEIAFSDS--YRIYSDMFD----FA--VDLR------P-NPDY-SLIQETIA 73 (337)
T ss_dssp EEEEECTTGGGSTTCEEEEE-EEEEEEEEEEEECSS--CEEEETTSS----SC--BCSS------C-CTTT-HHHHHHHH
T ss_pred eEEEeccceEecCCCEEEEE-EccccEEEEEEeCCc--EEEecCCCC----ce--eeec------C-CCCc-HHHHHHHH
Confidence 56789999999999999999 999999999988753 788887642 11 1111 1 3468 79998887
Q ss_pred HHHh----cCCCCCceEEEEEeCCCCC---CCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhh
Q psy9976 87 IFND----RVAPVPGFNAVILSSVPMG---SGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIM 159 (349)
Q Consensus 87 ~l~~----~~~~~~g~~i~i~s~iP~g---~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~ 159 (349)
.+.+ .+...+||++.|.|+||.+ +|||||||++||++.|++++++.++ ++++++++|+++| .+.|.++|.|
T Consensus 74 ~~~~~~~~~g~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l-~~~~l~~la~~~E-~~~~~~~~~~ 151 (337)
T 2pg9_A 74 LMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSV-DQNLLFKLTSAVL-LKRGDNGSMG 151 (337)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH-HHTTCCSCSH
T ss_pred HHHHHHHhcCCCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH-HHhCCCCCHH
Confidence 7643 4667789999999999999 9999999999999999999999999 9999999999999 5678888888
Q ss_pred HHHHHHhccCCeEEEEe-cC---------------------CCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHH
Q psy9976 160 DQYVSVMGEEGSALLID-CK---------------------THEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQ 217 (349)
Q Consensus 160 D~~a~~~gg~~~~~~~d-~~---------------------~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~ 217 (349)
||++++||| ++++. +. +..+++++++ +++++++++|+++++|.
T Consensus 152 D~~~~~~Gg---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~~~lvl~~~~~~~~T~---------- 216 (337)
T 2pg9_A 152 DLACIAAED---LVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT--LECDFLVGWTKEVAVSS---------- 216 (337)
T ss_dssp HHHHHHHTS---CEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC--SCCEEEEEECCCCCCHH----------
T ss_pred HHHHHHhCC---EEEEecCChHHhhhhhcccchhhhcccccccceeeecCC--CCceEEEEECCCccchH----------
Confidence 999999999 44443 22 2356777665 48999999999998864
Q ss_pred HHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccc-
Q psy9976 218 CKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTE-IDRTYKGANALKEGDFETFGKLMNESHDSLRDDY- 295 (349)
Q Consensus 218 ~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e-~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~- 295 (349)
++.+.+.. ..++. .+.+ .+++.+++++|.++|++.||++|+++|.++++..
T Consensus 217 --~~~~~~~~------------------~~~~~-------~~~~~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~ 269 (337)
T 2pg9_A 217 --HMVQQIKQ------------------NINQN-------FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLST 269 (337)
T ss_dssp --HHHHHHGG------------------GCCHH-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHH------------------HHHHH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 22233321 11111 1222 2347889999999999999999999999998743
Q ss_pred CCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhhhhhhc
Q psy9976 296 EVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRRGRKKK 345 (349)
Q Consensus 296 ~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~~~~~~ 345 (349)
++++|++|.+++.+++ .|++ +||||||||||+++|++++ .++++.+.+
T Consensus 270 ~v~~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~~~~~~~~~~~l 318 (337)
T 2pg9_A 270 DIYTPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFDAQSTKTLKNRW 318 (337)
T ss_dssp TTCCHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECCHHHHHHHHHHH
Confidence 3999999999999999 5999 9999999999999999864 466666554
No 10
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=7.4e-43 Score=339.34 Aligned_cols=293 Identities=21% Similarity=0.276 Sum_probs=222.9
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCC-----C---------
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLT-----P--------- 72 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~-----~--------- 72 (349)
|+.++|||.+ ++||.||++ |||+++++.+++++++.+++.+.+.. ...+|++++..... +
T Consensus 13 rv~L~Geh~d-~~g~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (395)
T 1kvk_A 13 KVILHGEHAV-VHGKVALAV-ALNLRTFLVLRPQSNGKVSLNLPNVG----IKQVWDVATLQLLDTGFLEQGDVPAPTLE 86 (395)
T ss_dssp EEEEECTTGG-GGTCCEEEE-EEEEEEEEEEEECSSSEEEEEETTTT----EEEEEEHHHHHTSCC--------------
T ss_pred EEEEecCCee-eECCEeeee-EeeccEEEEEEECCCCeEEEEcCCCC----ceEEEEhHhhhhhhcccccccccccccHH
Confidence 4568899875 779999999 99999999999999999999887641 12345443110000 0
Q ss_pred ---------CCcCHhHH-----HHHHHHHHHhc-CC--CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCC---
Q psy9976 73 ---------GAPKWANY-----VKGVVSIFNDR-VA--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDE--- 132 (349)
Q Consensus 73 ---------~~~~w~~~-----v~~~~~~l~~~-~~--~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~--- 132 (349)
....|.|| ++.++..+.+. +. ..+||++.+.|+||+|+|||||||++||++.|++++++.
T Consensus 87 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~ 166 (395)
T 1kvk_A 87 QLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTN 166 (395)
T ss_dssp --CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccc
Confidence 02378898 44554444332 32 257999999999999999999999999999999999998
Q ss_pred --CCCC-------H---HHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeC
Q psy9976 133 --KTLK-------L---TDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINS 200 (349)
Q Consensus 133 --~~~~-------~---~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s 200 (349)
++ + + .+++++|+.+|+.++|.|||+ ||+++++|| +++++ +..++++|.+ ++++++|++|
T Consensus 167 ~~~l-~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg---~~~~~--~~~~~~l~~~--~~~~~vl~~~ 237 (395)
T 1kvk_A 167 PLKD-RGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGG---ALRYQ--QGKMSSLKRL--PALQILLTNT 237 (395)
T ss_dssp GGGG-CCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCS---EEEES--SSCEEECSCC--CCEEEEEEEC
T ss_pred cccc-cccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcc---eEEEc--CCCceeccCC--CCcEEEEEEC
Confidence 77 7 7 556666889999999999999 999999998 56653 4467777754 5899999999
Q ss_pred CCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHH
Q psy9976 201 NVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG-ANALKEGDFET 279 (349)
Q Consensus 201 ~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~-~~al~~~d~~~ 279 (349)
+++++|.. .+...|... ..+ .+.+ +..++++.|++.|+.|+... ..+|.++|++.
T Consensus 238 ~~~~~T~~-~~~~~~~~~----~~~---------~~~~----------~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~ 293 (395)
T 1kvk_A 238 KVPRSTKA-LVAGVRSRL----IKF---------PEIM----------APLLTSIDAISLECERVLGEMAAAPVPEQYLV 293 (395)
T ss_dssp CCCCCHHH-HHHHHHHHH----HHS---------HHHH----------HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCCchHH-HHHHHHHHH----HHC---------HHHH----------HHHHHHHHHHHHHHHHHHHhhhccccHHHHHH
Confidence 99998742 222111000 000 0111 12356778888888776655 57788899999
Q ss_pred HHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhhh
Q psy9976 280 FGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRG 341 (349)
Q Consensus 280 lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~~ 341 (349)
||++|+++|.++++ |++++|++|.+++.+++ .|+ |+||||||||||+++|++++..+++
T Consensus 294 lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~ 352 (395)
T 1kvk_A 294 LEELMDMNQHHLNA-LGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGCGITLLKPGLERAK 352 (395)
T ss_dssp HHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSEEEEEECTTCCHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCEEEEEecCCCCHHH
Confidence 99999999999997 99999999999999999 599 9999999999999999998754443
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=1.2e-39 Score=306.21 Aligned_cols=277 Identities=19% Similarity=0.230 Sum_probs=217.2
Q ss_pred HHhhhhhceeeeCCcEEEecccccce-EEEEEEecCCCe-EEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVV-TVLLGSRNNSNQ-IHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGV 84 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~-~~v~~~~~~d~~-i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~ 84 (349)
|+.++||+.. ++++.+|++ +||++ +++++++++++. +++.+..+. .+++ ..+.|.|+++++
T Consensus 14 kinL~Ge~~d-~~g~~~l~~-ai~~~~~~v~v~~~~~~~~i~~~~~~~~--------~~~~-------~~~~~~~~v~~~ 76 (308)
T 2x7i_A 14 KIILIGEHAV-TFGEPAIAV-PFNAGKIKVLIEALESGNYSSIKSDVYD--------GMLY-------DAPDHLKSLVNR 76 (308)
T ss_dssp EEEEEEBTTC-CTTSCEEEE-EEEEEEEEEEEEECCTTCCCEEEEEECS--------SCCC-------CTTSCHHHHHHH
T ss_pred EEEEEecCee-ecCCeEEEE-EEcCCEEEEEEEECCCCCeeEEEecCCC--------CChh-------hhhHHHHHHHHH
Confidence 4456799865 899999999 99995 889999887766 777765421 0121 123689999999
Q ss_pred HHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHH
Q psy9976 85 VSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVS 164 (349)
Q Consensus 85 ~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~ 164 (349)
+..+.+. .+|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|+++|+.++|.|||. |+.++
T Consensus 77 ~~~~~~~---~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l-~~~~l~~la~~~E~~~~g~~sG~-d~~~~ 151 (308)
T 2x7i_A 77 FVELNNI---TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSL-TKEELIEKANWAEQIAHGKPSGI-DTQTI 151 (308)
T ss_dssp HHHHTTC---CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHSSCCHH-HHHHH
T ss_pred HHHHHhh---CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHCCCCchH-HHHHh
Confidence 9888643 3599999999999999999999999999999999999999 99999999999999999999998 99999
Q ss_pred HhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhc
Q psy9976 165 VMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQ 244 (349)
Q Consensus 165 ~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~ 244 (349)
.+|| .++++ ++..++++|++ +++.+++++++.+++|.. .+ +.+.. . .
T Consensus 152 ~~g~---~~~~~-~g~~~~~~~~~--~~~~~vi~~~~~~~sT~~-~~-----------~~l~~-----~----~------ 198 (308)
T 2x7i_A 152 VSGK---PVWFQ-KGHAETLKTLS--LDGYMVVIDTGVKGSTRQ-AV-----------HDVHK-----L----C------ 198 (308)
T ss_dssp HHTS---CEEEE-TTEEEECSCCC--BSSEEEEEECCC--CCSC-CC-----------C---------------------
T ss_pred hCCc---eEEEE-cCCCceEeccC--CCceEEEEECcCCCCHHH-HH-----------HHHHH-----H----H------
Confidence 9987 56777 45556666654 378899999999888752 11 11110 0 0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccC
Q psy9976 245 KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGG 324 (349)
Q Consensus 245 ~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG 324 (349)
. .++..++ ..+ +. .++.++.++|+++|++.||++|+++|..+++ +++++|+++.+++.+++ .|++|+||||+|
T Consensus 199 ~-~~~~~~~-~~~-~~--~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG 271 (308)
T 2x7i_A 199 E-DPQYMSH-VKH-IG--KLVLRASDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAG 271 (308)
T ss_dssp ---CCHHHH-HHH-HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTT
T ss_pred h-cCchHHH-HHH-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccC
Confidence 0 0111111 222 22 2478889999999999999999999999998 79999999999999999 699999999999
Q ss_pred ccceeEEEeCC-Cchhhhhhhc
Q psy9976 325 FGGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 325 ~GG~~i~l~~~-~~~~~~~~~~ 345 (349)
+|||+++|+++ +.++++.+++
T Consensus 272 ~GG~v~~l~~~~~~~~~~~~~l 293 (308)
T 2x7i_A 272 RGGSMLLLAKDLPTAKNIVKAV 293 (308)
T ss_dssp TCSSEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEEeCChhHHHHHHHHH
Confidence 99999999998 6677776654
No 12
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=3.7e-38 Score=298.16 Aligned_cols=273 Identities=24% Similarity=0.344 Sum_probs=205.4
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++||+ .+.+||.+|++ |||+++++++++.++ ++|.+... .. .++ .... |+++.+..
T Consensus 29 kinL~GeH-~~~~Gg~~l~~-aI~~~~~v~v~~~~~--i~i~~~~~------~~--~~~------~~~~---~~~~~~~~ 87 (321)
T 4hac_A 29 KIYLFGEH-AVVYGETAIAC-AVELRTRVRAELNDS--ITIQSQIG------RT--GLD------FEKH---PYVSAVIE 87 (321)
T ss_dssp EEEEECTT-TGGGTCCEEEE-EEEEEEEEEEEECSS--EEEEETTE------EE--SSC------TTTS---HHHHHHHH
T ss_pred EEEEEccC-EEEcCCEEEEE-EeccCEEEEEEECCC--EEEEECCC------Cc--ccc------cchh---HHHHHHHH
Confidence 34566754 56689999999 999999999987543 88887652 00 111 1122 44455555
Q ss_pred HHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHh
Q psy9976 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166 (349)
Q Consensus 87 ~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~ 166 (349)
.+.+.+ ..+|+++.+.++||+++|||||||+++|++.|++++++.++ ++++++++|.++|+.++|.+ |.+|++++++
T Consensus 88 ~l~~~~-~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l-~~~~l~~la~~~e~~~~g~~-~~~D~~~~~~ 164 (321)
T 4hac_A 88 KMRKSI-PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGL-SLQEIAKLGHEIEIKVQGAA-SPTDTYVSTF 164 (321)
T ss_dssp HHTTTS-CCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHSCC-CSHHHHHHHH
T ss_pred HHHHhC-CCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCC-cHHHHHHHHc
Confidence 555444 46799999999999999999999999999999999999999 99999999999999999995 5569999999
Q ss_pred ccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 167 gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
|| ++++ ... +.+++ |+++++|++|+++++|.. .|. .++.+.. .
T Consensus 165 Gg---~~~~-~~~---~~l~~---p~~~~vlv~p~~~~sT~~-~~~--------~~~~l~~------------------~ 207 (321)
T 4hac_A 165 GG---VVTI-PER---RKLKT---PDCGIVIGDTGVFSSTKE-LVA--------NVRQLRE------------------S 207 (321)
T ss_dssp CS---EEEE-TTC---CEECC---CCCEEEEEECCCCCCHHH-HHH--------HHHHHHH------------------H
T ss_pred CC---eEEE-cCC---ceecc---CCCEEEEEECCCCccHHH-HHH--------HHHHHHh------------------c
Confidence 98 5665 222 23443 378899999999988642 111 1111110 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCcc
Q psy9976 247 LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFG 326 (349)
Q Consensus 247 l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~G 326 (349)
.+...+...+.+.+. +.++.++|.++|++.||++|+++|..+ +.+++++|+++++++.+++ .|++|+||||+|+|
T Consensus 208 -~~~~~~~~~~~~~~~--~~~~~~al~~~d~~~lg~~~~~~~~~~-~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~G 282 (321)
T 4hac_A 208 -YPDLIEPLMTSIGKI--SRIGEQLVLSGDYASIGRLMNVNQGLL-DALGVNILELSQLIYSARA-AGAFGAKITGAGGG 282 (321)
T ss_dssp -CHHHHHHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSS
T ss_pred -CHHHHHHHHHHHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCC
Confidence 111112222233332 678899999999999999999998755 4589999999999999999 69999999999999
Q ss_pred ceeEEEeCCCchhhhhhhc
Q psy9976 327 GCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 327 G~~i~l~~~~~~~~~~~~~ 345 (349)
||+++|++++.++++.+.+
T Consensus 283 G~v~al~~~~~a~~~~~~l 301 (321)
T 4hac_A 283 GCMVALTAPEKCNQVAEAV 301 (321)
T ss_dssp SEEEEEECSTTHHHHHHHH
T ss_pred CEEEEEcCHHHHHHHHHHH
Confidence 9999999777777777655
No 13
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=3.5e-38 Score=297.49 Aligned_cols=282 Identities=21% Similarity=0.292 Sum_probs=214.3
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~ 86 (349)
|+.++|||.+. +|+.+|++ |||+++++.++++++..+++.+... ....+|++++ .+...+.+| ++++.++.
T Consensus 13 ki~L~geh~~~-~G~~~l~~-ai~~~~~v~v~~~~~~~i~i~~~~~----~~~~~~~~~~--~~~~~~~~~-~~~~~~~~ 83 (317)
T 1kkh_A 13 KVILFGEHAVV-YGYRAISM-AIDLTSTIEIKETQEDEIILNLNDL----NKSLGLNLNE--IKNINPNNF-GDFKYCLC 83 (317)
T ss_dssp EEEEECTTGGG-GTCCEEEE-EEEEEEEEEEEECCSSEEEEEETTT----TEEEEEETTT--GGGCCGGGS-GGGHHHHH
T ss_pred EEEEEcCCeeE-cCCEEEEE-EecCeEEEEEEECCCCeEEEEeCCC----CCceEEEecc--CCccCcccc-hHHHHHHH
Confidence 45678998765 67789999 9999999999998888898887653 1234455431 111223467 66777766
Q ss_pred HHHhc----CC-CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHH
Q psy9976 87 IFNDR----VA-PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQ 161 (349)
Q Consensus 87 ~l~~~----~~-~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~ 161 (349)
.+... +. ..+|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|+++|+.++|.|+| +|+
T Consensus 84 ~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l-~~~~l~~~a~~~E~~~~g~~sg-~D~ 161 (317)
T 1kkh_A 84 AIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKEL-KDDEIAKLGYMVEKEIQGKASI-TDT 161 (317)
T ss_dssp HHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHHHHHSSSCCS-HHH
T ss_pred HHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCch-HHH
Confidence 65431 32 24699999999999999999999999999999999999999 9999999999999999999988 599
Q ss_pred HHHHhccCCeEEEEecCCCeeEEeeCCCCC-----CeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHH
Q psy9976 162 YVSVMGEEGSALLIDCKTHEARHIPLGDDH-----QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236 (349)
Q Consensus 162 ~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~-----~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~ 236 (349)
+++++|| .+++ .+..+++++++. | ++.+++++|+.+++|.. +.+.+.. ++
T Consensus 162 ~~~~~Gg---~~~~--~~~~~~~~~~~~-~~~l~~~~~~vl~~~~~~~~T~~------------~~~~~~~--~~----- 216 (317)
T 1kkh_A 162 STITYKG---ILEI--KNNKFRKIKGEF-EEFLKNCKFLIVYAEKRKKKTAE------------LVNEVAK--IE----- 216 (317)
T ss_dssp HHHHHCS---EEEE--SSSCEEEECHHH-HHHHHTCCEEEEEEECCCSCHHH------------HHHHHHT--CT-----
T ss_pred HHHHhCC---eEEE--cCCCceEecCCc-ccccccCcEEEEEECCCcCcHHH------------HHHHHHH--hh-----
Confidence 9999998 4455 345577776432 1 25899999999887641 1111210 00
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCe
Q psy9976 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316 (349)
Q Consensus 237 ~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~ 316 (349)
+. ...+.+.. ..+.+++..+|++.|+++|+++|..+++ +++++|+++.+++.+++ .| +
T Consensus 217 -----------~~------~~~~~~~~--~~~~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~-~G-~ 274 (317)
T 1kkh_A 217 -----------NK------DEIFKEID--KVIDEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-F 274 (317)
T ss_dssp -----------TH------HHHHHHHH--HHHHHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-S
T ss_pred -----------cc------HHHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHh-cC-c
Confidence 00 01112221 2245678889999999999999998876 79999999999999999 59 9
Q ss_pred EEEecccCccceeEEEeCCCchhhhhhhcc
Q psy9976 317 GCRMTGGGFGGCAIALVSPLNLRRGRKKKS 346 (349)
Q Consensus 317 gakltGaG~GG~~i~l~~~~~~~~~~~~~~ 346 (349)
|+||||+|+|||+++|++++.++++.+.++
T Consensus 275 ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 275 GAKLTGAGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp EEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred eeEEeecCCCCEEEEEechhhHHHHHHHHH
Confidence 999999999999999999887777776653
No 14
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=6.5e-37 Score=290.55 Aligned_cols=281 Identities=20% Similarity=0.282 Sum_probs=209.5
Q ss_pred HHhhhhhceeeeCCcEEEecccccceEEEEEEecC-CCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVRQVVTVLLGSRNN-SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~-d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~ 85 (349)
|+.++|||.+ .+||.+|++ +||+++++.+++++ ++.+++.+... .++. ....+.|.+..++
T Consensus 21 Ki~L~Geh~~-~~G~~~l~~-ai~~~~~v~v~~~~~~~~~~~~~~~~----------~~~~------~~~~~~~~~~~a~ 82 (332)
T 2hfs_A 21 KVILFGEHFV-VHGAEAIVA-GISEYTECRLEINPGVPGLQVDDQRP----------AIPG------YIAQKRDEQIKAH 82 (332)
T ss_dssp EEEEECTTGG-GGTCCEEEE-EEEEEEEEEEEEETTCCSEEEEECCC----------CCTT------HHHHHHHHHHHHH
T ss_pred EEEEecCCEE-EcCCeEEEE-EecccEEEEEEEcCCCCCeEEEecCc----------cccc------cccccchhHHHHH
Confidence 4567787655 478999999 99999999998875 45566644321 1110 0012335555555
Q ss_pred HHH-HhcCCCC--CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy9976 86 SIF-NDRVAPV--PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY 162 (349)
Q Consensus 86 ~~l-~~~~~~~--~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~ 162 (349)
..+ ...+... +|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|+++|+.++|.|+|. |++
T Consensus 83 ~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l-~~~~l~~~a~~~E~~~~G~~~G~-D~~ 160 (332)
T 2hfs_A 83 QLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNL-TDEEVNLSAFVGEGGYHGTPSGA-DNT 160 (332)
T ss_dssp HHHHHHTTBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHGGGSSSCCCSH-HHH
T ss_pred HHHHHHcCCccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCcH-hHH
Confidence 544 3344432 699999999999999999999999999999999999999 99999999999999999999999 999
Q ss_pred HHHhccCCeEEEEecCC-C-eeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHH
Q psy9976 163 VSVMGEEGSALLIDCKT-H-EARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLED 240 (349)
Q Consensus 163 a~~~gg~~~~~~~d~~~-~-~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~ 240 (349)
++++|| +++++... . .+++++++ ++++++|++|+.+++|. ..|...+ .+ ++.
T Consensus 161 ~~~~Gg---~~~~~~~~g~~~~~~~~~~--~~~~~vl~~~~~~~~T~-~~~~~~~--------~~-----~~~------- 214 (332)
T 2hfs_A 161 AATYGG---LILYRRQNGKSVFKPIAFQ--QRLYLVVVGTGINASTA-KVVNDVH--------KM-----KQQ------- 214 (332)
T ss_dssp HHHHCE---EEEEEECSSSEEEEEECCC--SCEEEEEEECSCCCCHH-HHHHHHH--------HH-----HHH-------
T ss_pred HHhcCC---eEEEecCCCCcceeeecCC--CCcEEEEEECCCCccHH-HHHHHHH--------HH-----HHh-------
Confidence 999998 55565322 2 46777765 48999999999998863 2222110 00 000
Q ss_pred HHhcccCCHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEE
Q psy9976 241 KHAQKLLSDEEYKRGHHVVTEI-DRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR 319 (349)
Q Consensus 241 ~~~~~~l~~~~~~r~~~~i~e~-~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gak 319 (349)
++..++. ++... +++.++.++|+++|++.|+++|+++|..++. +++++|+++.+++.+++ .|++|+|
T Consensus 215 -------~~~~~~~---~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~ 282 (332)
T 2hfs_A 215 -------QPVQFKR---LYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAK 282 (332)
T ss_dssp -------CHHHHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEE
T ss_pred -------CHHHHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEE
Confidence 1111111 11111 2367889999999999999999999998887 78999999999999999 6999999
Q ss_pred ecccCccceeEEEeCCCc-hhhhhhhc
Q psy9976 320 MTGGGFGGCAIALVSPLN-LRRGRKKK 345 (349)
Q Consensus 320 ltGaG~GG~~i~l~~~~~-~~~~~~~~ 345 (349)
|||+|+|||+++|++++. ++++.+.+
T Consensus 283 ~sGaG~gg~v~~l~~~~~~a~~~~~~l 309 (332)
T 2hfs_A 283 LSGTGRGGIAVALAASSDQRDAIVKGL 309 (332)
T ss_dssp EESSCSSSEEEEEESSHHHHHHHHHHH
T ss_pred eccCCCCcEEEEEecCcccHHHHHHHH
Confidence 999999999999998764 55665543
No 15
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=9.2e-37 Score=284.14 Aligned_cols=265 Identities=20% Similarity=0.238 Sum_probs=199.6
Q ss_pred HHhhhhhceeeeCCcEEEecccc-cceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHH
Q psy9976 7 RLYLLKSLMVKKRLQWIIMMDVR-QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVV 85 (349)
Q Consensus 7 ~l~~~~~~~~~~~~G~vl~~~Ai-~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~ 85 (349)
|+.++||+.. .+|+.+|++ +| |+++++.+++++ +.+++.+. ...|.+..+.
T Consensus 13 ki~L~Ge~~~-~~g~~~l~~-ai~~~~~~v~v~~~~-~~~~i~~~-------------------------~~~~~~~~~~ 64 (292)
T 2oi2_A 13 KIILIGEHAV-VYGYPAISL-PLLEVEVTCKVVPAE-SPWRLYEE-------------------------DTLSMAVYAS 64 (292)
T ss_dssp EEEEECTTGG-GGTCCEEEE-EEEEEEEEEEEEECS-SCCCCCCC-------------------------SHHHHHHHHH
T ss_pred EEEEEeCCee-ecCCcEEEE-EEcCcEEEEEEEECC-CceEEEec-------------------------Cccchhhhhh
Confidence 4567899865 588889999 99 999999998753 22222110 1124444444
Q ss_pred HHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHH
Q psy9976 86 SIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSV 165 (349)
Q Consensus 86 ~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~ 165 (349)
..+. +...+|++|.+.++||+++|||||||+++|++.|++++++.++ ++++++++|.++|+.++|.|+|+ |+++++
T Consensus 65 ~~~~--~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l-~~~~l~~la~~~E~~~~~~p~g~-d~~~~~ 140 (292)
T 2oi2_A 65 LEYL--NITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADL-PHDVLEILVNRAEMIAHMNPSGL-DAKTCL 140 (292)
T ss_dssp HHHH--TCSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHTTCCCCSH-HHHHHT
T ss_pred HHHh--cccCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHhcCCCCch-hHHHHh
Confidence 4332 4435699999999999999999999999999999999999999 99999999999999899999997 999999
Q ss_pred hccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcc
Q psy9976 166 MGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQK 245 (349)
Q Consensus 166 ~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~ 245 (349)
+|| ++++ .+...++++|++. +.+ +++++++.+++|.. +.+.+....
T Consensus 141 ~gg---~~~~-~~~~~~~~~~~~~-~~~-~~i~~~~~~~sT~~------------~~~~l~~~~---------------- 186 (292)
T 2oi2_A 141 SDQ---PIRF-IKNVGFTELEMDL-SAY-LVIADTGVYGHTRE------------AIQVVQNKG---------------- 186 (292)
T ss_dssp CSS---CEEE-ETTTEEEECCCCC-SCE-EEEEECSSCCCHHH------------HHHHHHHTG----------------
T ss_pred cCc---eEEE-EcCCCceeecCCC-CCE-EEEEECCCCCcHHH------------HHHHHHHHH----------------
Confidence 998 4555 3455677777654 455 89999998887642 122221100
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCc
Q psy9976 246 LLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGF 325 (349)
Q Consensus 246 ~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~ 325 (349)
+. .++..+.+.+. +.++.++|.++|++.|+++|+++|..+++ +++++|+++.+++.+++ .|++|+||||+|+
T Consensus 187 --~~--~~~~~~~~~~~--~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~ 258 (292)
T 2oi2_A 187 --KD--ALPFLHALGEL--TQQAEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGL 258 (292)
T ss_dssp --GG--GHHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSS
T ss_pred --hh--hHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCC
Confidence 00 01223333333 67888999999999999999999999987 79999999999999999 6999999999999
Q ss_pred cceeEEEeCC-Cchhhhhhhc
Q psy9976 326 GGCAIALVSP-LNLRRGRKKK 345 (349)
Q Consensus 326 GG~~i~l~~~-~~~~~~~~~~ 345 (349)
|||+++|+++ +.++++.+.+
T Consensus 259 Gg~v~~l~~~~~~~~~~~~~l 279 (292)
T 2oi2_A 259 GGCIIALVTNLTHAQELAERL 279 (292)
T ss_dssp SSEEEEEESCHHHHHHHHHHH
T ss_pred CcEEEEEecCchHHHHHHHHH
Confidence 9999999987 5677766654
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=100.00 E-value=5.4e-32 Score=252.60 Aligned_cols=254 Identities=18% Similarity=0.187 Sum_probs=196.7
Q ss_pred EEecccccc-eEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhc-CCCCCceEE
Q psy9976 23 IIMMDVRQV-VTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR-VAPVPGFNA 100 (349)
Q Consensus 23 vl~~~Ai~~-~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~-~~~~~g~~i 100 (349)
|+++ ++|. ++++++++++++.+++.+... .++ .+.|.|++..+++.+.+. +.. .|++|
T Consensus 20 vl~~-a~d~~~~~~~~~~~~~~~~~i~~~~~----------~~~--------~~~~~n~v~~a~~~~~~~~g~~-~g~~i 79 (296)
T 1h72_C 20 VFGL-CLKEPYDVIEVEAIDDKEIIIEVDDK----------NIP--------TDPDKNVAGIVAKKMIDDFNIG-KGVKI 79 (296)
T ss_dssp TEEE-EEEEEEEEEEEEEESSSSEEEEESCT----------TSC--------CCTTTSHHHHHHHHHHHHTTCC-CEEEE
T ss_pred hhHH-hcccccEEEEEEecCCCeEEEEEcCC----------cCC--------CCCccCcHHHHHHHHHHHhCCC-CCeEE
Confidence 8999 9998 566677776666677664321 011 123789999999887664 433 69999
Q ss_pred EEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCC
Q psy9976 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH 180 (349)
Q Consensus 101 ~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~ 180 (349)
.+.++||+|+|||||||+++|++.|++++++.++ ++++++++|.++|..++|.|++. |..++++||. +++.+..+.
T Consensus 80 ~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l-~~~~l~~la~~~e~~~~g~~~~d-dv~~~~~gg~--~~~~~~~~~ 155 (296)
T 1h72_C 80 TIKKGVKAGSGLGSSAASSAGTAYAINELFKLNL-DKLKLVDYASYGELASSGAKHAD-NVAPAIFGGF--TMVTNYEPL 155 (296)
T ss_dssp EEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHSSCCCT-THHHHHHCSE--EEEEETTTT
T ss_pred EEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhcCcccCCCCcc-chHHHHhCCE--EEEEeCCce
Confidence 9999999999999999999999999999999999 99999999999999999999974 6666999982 344445555
Q ss_pred eeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHH
Q psy9976 181 EARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVT 260 (349)
Q Consensus 181 ~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~ 260 (349)
.++++++| ++++++|++|+++.+|. ++.+.+.. ..+ ..+.+.
T Consensus 156 ~~~~~~~~--~~~~~vl~~p~~~~~T~------------~~~~~l~~------------------~~~------~~~~~~ 197 (296)
T 1h72_C 156 EVLHIPID--FKLDILIAIPNISINTK------------EAREILPK------------------AVG------LKDLVN 197 (296)
T ss_dssp EEEEECCC--SCCCEEEECCSSCCCHH------------HHHHTSCS------------------CCC------HHHHHH
T ss_pred EEEEEcCC--CCeEEEEEeCCCCccHH------------HHHHhccC------------------cCc------HHHHHH
Confidence 57888776 37889999999876653 22223321 001 234556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH--HHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCch
Q psy9976 261 EIDRTYKGANALKEGDFETFGKLM--NESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNL 338 (349)
Q Consensus 261 e~~rv~~~~~al~~~d~~~lg~lm--~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~ 338 (349)
+..|+.++.++|.++|++.||++| |..|+.++. .++|+++.+++.+++ . ++|++|||+| +|+++|++++.+
T Consensus 198 ~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~-~-a~ga~~sGsG--~~v~~l~~~~~~ 270 (296)
T 1h72_C 198 NVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKD-K-VYGITISGSG--PSIIAFPKEEFI 270 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTT-T-EEEEEECTTS--SCEEEEECGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHh-h-cceEEEecCC--hheEEEecHHHH
Confidence 666788899999999999999999 556666654 799999999999999 5 7999999998 599999976777
Q ss_pred hhhhhhc
Q psy9976 339 RRGRKKK 345 (349)
Q Consensus 339 ~~~~~~~ 345 (349)
+++.+.+
T Consensus 271 ~~~~~~l 277 (296)
T 1h72_C 271 DEVENIL 277 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.95 E-value=1.2e-26 Score=216.81 Aligned_cols=247 Identities=15% Similarity=0.141 Sum_probs=171.3
Q ss_pred EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEEE
Q psy9976 23 IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVI 102 (349)
Q Consensus 23 vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~i 102 (349)
+|.+ |||++.++.+++. ++.+++..... . .++. ++ .|++..++..+.+ ...|++|.+
T Consensus 20 ~lg~-al~l~d~v~~~~~-~~~~~i~~~~~-----~----~~p~------~~---~nlv~~a~~~~~~---~~~g~~i~i 76 (298)
T 3hul_A 20 SCGL-ALTLYLTLDIGAE-ADSWYIEHNIG-----G----GIPH------DE---TNVIIETALNLAP---NLTPHHLVM 76 (298)
T ss_dssp TEEE-EEEEEEEEEEEEE-CSSCEEECCCC-----T----TCCS------ST---TSHHHHHHHHHCT---TCCCEEEEE
T ss_pred hhhh-hcccceEEEEEEc-CCceEEEecCc-----c----cCCC------CC---CcHHHHHHHHHhc---cCCceEEEE
Confidence 6667 9999999988753 34455554321 0 1110 11 2566666666654 356999999
Q ss_pred EeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCee
Q psy9976 103 LSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEA 182 (349)
Q Consensus 103 ~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~~ 182 (349)
.++||+++|||||||+++|++.|++++++.++ +++++++++.++| |.| .|.+++++|| +.+....+..+
T Consensus 77 ~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l-~~~el~~la~~~e----g~~---ddv~~~~~GG---~~~~~g~ge~~ 145 (298)
T 3hul_A 77 TCDIPPARGLGSSSAAVVAGIELANTLAELNL-SKEEKVRIAAEIE----GHP---DNVAPAVLGN---WVVGAKLDGED 145 (298)
T ss_dssp EECSCTTSSSSHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH----SCS---TTHHHHHHCS---EEEEEEETTEE
T ss_pred ecCCCCCCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhc----CCc---ccCcccccCC---EEEEEeCCCcE
Confidence 99999999999999999999999999999999 9999999999998 444 2566788999 44433333344
Q ss_pred EEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHH
Q psy9976 183 RHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEI 262 (349)
Q Consensus 183 ~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~ 262 (349)
...+++. |+++++++.++...+|. ++.+.+..+ .+. . ..+.+.
T Consensus 146 ~~~~~~~-p~~~~vlv~p~~~~sT~------------~a~~~l~~~------------------~~~---~---~~~~~~ 188 (298)
T 3hul_A 146 FYVRHLF-PDCALIAFIPKAELLTS------------ESRGVLPDT------------------LPF---K---EAVQAS 188 (298)
T ss_dssp EEEEECC-C-CEEEEEECCCCCC--------------------CCE------------------EEH---H---HHHHHH
T ss_pred EEEEcCC-CCeEEEEEECCCCCCcH------------HHHHHHhhh------------------ccH---H---HHHHHH
Confidence 4334443 57899999999887764 122333210 010 0 122334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH--HHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCCchhh
Q psy9976 263 DRTYKGANALKEGDFETFGKLMNE--SHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRR 340 (349)
Q Consensus 263 ~rv~~~~~al~~~d~~~lg~lm~~--s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~~~~~ 340 (349)
.++..++.+|.++|++.++++|+. .|+..+. ..+|+++.+++.+++ .|++|++|||+| +|+++|++++.+++
T Consensus 189 ~~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~---~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~~~a~~ 262 (298)
T 3hul_A 189 SIANVMIAAILRNDMTLAGEMMERDLWHEKYRS---QLVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPRNLANK 262 (298)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCCC-----C---TTGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHH---hhCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECHHHHHH
Confidence 457889999999999999999963 2454443 258999999999999 699999999998 79999999777777
Q ss_pred hhhhcc
Q psy9976 341 GRKKKS 346 (349)
Q Consensus 341 ~~~~~~ 346 (349)
+.+.++
T Consensus 263 v~~~l~ 268 (298)
T 3hul_A 263 LQTSLQ 268 (298)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 18
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.95 E-value=8.4e-27 Score=219.79 Aligned_cols=267 Identities=15% Similarity=0.086 Sum_probs=183.9
Q ss_pred ceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 14 LMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 14 ~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
|+.++++|+++|. ....++.+. ..+++-+++..+..+ +..++.++.. .....|.|+++.+++.+.+.+.
T Consensus 22 ~~g~~~~g~~lp~-~dslg~al~-~l~~~~~v~~~~~~~-----~~~~~~~~g~----~~~~~~~n~v~~~~~~~~~~~~ 90 (317)
T 2gs8_A 22 YWGKENQAKMIPS-TSSISLTLE-NMFTTTSVSFLPDTA-----TSDQFYINGI----LQNDEEHTKISAIIDQFRQPGQ 90 (317)
T ss_dssp CCCEEETTTTEES-SCEEEEEEE-EEEEEEEEEECCTTC-----CSCEEEETTE----ECCHHHHHHHHHHHTTTCCTTC
T ss_pred eeeeccCCcccCC-CCceEEEee-cccceEEEEEEcCCC-----CeEEEEECCC----ccccchHHHHHHHHHHHHHhcC
Confidence 7889999999988 777776664 344433444322221 1123443311 1123699999999998876554
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
.|++|.+.++||.++|||||||.++|++.|++++++.++ +++++++++.+.|. +...+++|| ++
T Consensus 91 --~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~l-s~~el~~la~~~~G----------~~~~~~~GG---~~ 154 (317)
T 2gs8_A 91 --AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQL-DQKALAQKAKFASG----------SSSRSFFGP---VA 154 (317)
T ss_dssp --CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHG----------GGGGGGSCS---EE
T ss_pred --CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhhcc----------hhHhhhcCC---hh
Confidence 789999999999999999999999999999999999999 99999999987752 345578998 55
Q ss_pred EEecCCCeeEEeeCCCCCCeEE--EEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHH
Q psy9976 174 LIDCKTHEARHIPLGDDHQYVF--LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251 (349)
Q Consensus 174 ~~d~~~~~~~~l~~~~~~~~~~--ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 251 (349)
.....+..+...|+|. ++.+ ++++++.++..++..|+.++ .. ++..
T Consensus 155 ~~~~~~~~~~~~~~~~--~~~~~v~i~~~~~~~~~tt~~~~~~~----------~~--------------------~~~~ 202 (317)
T 2gs8_A 155 AWDKDSGAIYKVETDL--KMAMIMLVLNAAKKPISSREGMKLCR----------DT--------------------STTF 202 (317)
T ss_dssp EECTTTCCEEECCCCC--CEEEEEEECCCSSCCSCHHHHHHHHH----------HH--------------------CTTH
T ss_pred eEeeCCCceeEEEccc--cccEEEEEEECCCcCcccHHHHHHHh----------hc--------------------CHHH
Confidence 5554444344455553 5564 44466554443444454221 10 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCC-------hhHHHHHH---HHHcCCCCeEEEec
Q psy9976 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSC-------KELDDIAH---CAQSLPGVLGCRMT 321 (349)
Q Consensus 252 ~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~-------p~ld~l~~---~a~~~~Ga~gaklt 321 (349)
.+++.+ ...|+..++.||.++|++.||++|+++|..|++.+..++ |.+..+.+ .+++ .|+.++-++
T Consensus 203 ~~~~~~---~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~S 278 (317)
T 2gs8_A 203 DQWVEQ---SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTM 278 (317)
T ss_dssp HHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred HHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEe
Confidence 112222 244688999999999999999999999988887554444 44455554 4555 598899999
Q ss_pred ccCccceeEEEeCCCchhhhhhhc
Q psy9976 322 GGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 322 GaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
|+| +|+++|++++.++++.+.+
T Consensus 279 GaG--ptv~~l~~~~~~~~v~~~l 300 (317)
T 2gs8_A 279 DAG--PNVKVLCLEKDLAQLAERL 300 (317)
T ss_dssp CSS--SCEEEEEEGGGHHHHHHHH
T ss_pred cCC--CeEEEEEcHHHHHHHHHHH
Confidence 887 9999999988777776654
No 19
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.94 E-value=4.9e-26 Score=213.48 Aligned_cols=250 Identities=14% Similarity=0.174 Sum_probs=179.1
Q ss_pred eCCcE----EEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 18 KRLQW----IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 18 ~~~G~----vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
+.+|| .+.+ +||++..+.+++.++..|++..... . .++ . ...|++..++..+.+...
T Consensus 24 r~DGyh~l~s~~~-al~l~D~l~~~~~~~~~i~~~g~~~-----~----~~p------~---~~~Nlv~~A~~~l~~~~g 84 (306)
T 3pyf_A 24 REDGYHELTTVFH-AVSLVDEVTVRNADVLSLELVGEGA-----D----QLP------T---DERNLAWQAAELMAEHVG 84 (306)
T ss_dssp CTTSCCCEEEEEE-EEEEEEEEEEEECSSCEEEEESTTG-----G----GSC------C---STTSHHHHHHHHHHHHTT
T ss_pred CCCCCcchheeEE-EcccCCEEEEEECCCCEEEEeCCCc-----c----CCC------C---CCccHHHHHHHHHHHHhC
Confidence 45565 4446 8888888888776655555543211 0 111 0 124799888887766433
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
...|++|.+.++||+++|||||||.++|++.+++++++.++ +++++++++.++|. |.+++++|| ..
T Consensus 85 ~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l-~~~~l~~la~~~~~----------Dv~~~~~Gg---~~ 150 (306)
T 3pyf_A 85 RAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNV-PRRDLRMLAARLGS----------DVPFALHGG---TA 150 (306)
T ss_dssp CCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHCT----------THHHHHHBS---EE
T ss_pred CCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCC----------CCceeecCc---eE
Confidence 34699999999999999999999999999999999999999 99999999999862 999999998 55
Q ss_pred EEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHH
Q psy9976 174 LIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253 (349)
Q Consensus 174 ~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 253 (349)
+....+..+.+++.+ +++++++++|+.+.+|. ..| +.+.... . ...
T Consensus 151 ~~~g~ge~~~~l~~~--~~~~~vl~~P~~~vsT~-~a~-----------~~l~~~~----------~---~~~------- 196 (306)
T 3pyf_A 151 LGTGRGEELATVLSR--NTFHWVLAFADSGLLTS-AVY-----------NELDRLR----------E---VGD------- 196 (306)
T ss_dssp EECSSSSCCEEECCS--SCEEEEEEECSSCCCHH-HHH-----------HHHHHHH----------H---HSC-------
T ss_pred EEEeeCCeEEEccCC--CCcEEEEEECCCCCcHH-HHH-----------Hhhhhhc----------c---ccc-------
Confidence 555555567777765 48999999999987764 222 1221000 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEe
Q psy9976 254 RGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333 (349)
Q Consensus 254 r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~ 333 (349)
+....++..+..+|.++|++.+++.|.. .++......+|+++.+++.+++ .|++|++|||+| +|+++|+
T Consensus 197 -----~~~~~~~~~~~~al~~~d~~~l~~~l~n---~le~~~~~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~ 265 (306)
T 3pyf_A 197 -----PPRLGEPGPVLAALAAGDPDQLAPLLGN---EMQAAAVSLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLC 265 (306)
T ss_dssp -----CCCCCCHHHHHHHHHHTCHHHHGGGCEE---TTHHHHHHHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEE
T ss_pred -----cccccCHHHHHHHHHhCCHHHHHHHhcc---chHHHHHHhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEe
Confidence 0000125677889999999999998842 2333212358999999999999 699999999997 9999999
Q ss_pred CCC-chhhhhhhc
Q psy9976 334 SPL-NLRRGRKKK 345 (349)
Q Consensus 334 ~~~-~~~~~~~~~ 345 (349)
+++ .++++.+.+
T Consensus 266 ~~~~~a~~~~~~l 278 (306)
T 3pyf_A 266 TSASSAIDVGAQL 278 (306)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 874 355555443
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.93 E-value=1.1e-24 Score=206.54 Aligned_cols=271 Identities=15% Similarity=0.102 Sum_probs=185.5
Q ss_pred ceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCC
Q psy9976 14 LMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVA 93 (349)
Q Consensus 14 ~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~ 93 (349)
|+.++++|++||+ ...+++.+. .++++-+++ .+..+ +..++.++.. .+ ...|.|++..++..+.+...
T Consensus 23 y~gk~~~~~~lP~-~dslglal~-~~~~~~~v~-~~~~~-----~~~~~~i~g~-~~---~~~~~n~v~~~~~~~~~~~~ 90 (332)
T 3qt5_A 23 YWGKADETYIIPM-NNSLSVTLD-RFYTETKVT-FDPDF-----TEDCLILNGN-EV---NAKEKEKIQNYMNIVRDLAG 90 (332)
T ss_dssp CCCEEETTTTEES-SCEEEEEEE-EEEEEEEEE-EETTC-----SSCEEEETTE-EC---CHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeccCCccccC-CCceEEEec-CCCCeeEEE-EcCCC-----CccEEEECCc-cC---CcchHHHHHHHHHHHHHhcC
Confidence 8999999999999 888887776 345544555 23332 1234444421 11 23588999999988766433
Q ss_pred CCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEE
Q psy9976 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSAL 173 (349)
Q Consensus 94 ~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~ 173 (349)
...|++|.+.++||.++|||||||..+|++.|++++++.++ +++++++++.++| | |...++||| ++
T Consensus 91 ~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l-~~~el~~la~~~~--------g--~~~~~~~GG---~~ 156 (332)
T 3qt5_A 91 NRLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNL-SDTDLSRLARRGS--------G--SASRSIFGG---FA 156 (332)
T ss_dssp CCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHC--------G--GGGGGGSCS---EE
T ss_pred CCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHhc--------C--CchhhhcCC---eE
Confidence 34689999999999999999999999999999999999999 9999999999874 3 556788999 55
Q ss_pred EEecC-CC---eeEEeeCC-CCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 174 LIDCK-TH---EARHIPLG-DDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 174 ~~d~~-~~---~~~~l~~~-~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
..+.. .. ...+++.. ..|+++++++.+....++..+. +.+... +. . +
T Consensus 157 ~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~------------~~~~~~---------~~----~---s 208 (332)
T 3qt5_A 157 EWEKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSR------------SGMSLT---------RD----T---S 208 (332)
T ss_dssp EEECCSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CH------------HHHHHH---------HH----H---C
T ss_pred EEecCCCCccceeeecccccCCCCcEEEEEEEcCCCCCCchH------------HHHHHh---------hh----c---C
Confidence 54421 11 12455411 1157888888877654433211 111100 00 0 0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccc-------CCCChhHHHHHHHHH---cCCCCeE
Q psy9976 249 DEEYKRGHHVVTEID-RTYKGANALKEGDFETFGKLMNESHDSLRDDY-------EVSCKELDDIAHCAQ---SLPGVLG 317 (349)
Q Consensus 249 ~~~~~r~~~~i~e~~-rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~-------~vs~p~ld~l~~~a~---~~~Ga~g 317 (349)
. .++ +.+.+.. |+..++.||.++|++.|+++|..++..|...+ -..+|+++.+++.++ + .|++|
T Consensus 209 ~-~~~---~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~-~Ga~~ 283 (332)
T 3qt5_A 209 R-FYQ---YWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRK-ANLPC 283 (332)
T ss_dssp T-THH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCE
T ss_pred h-hHH---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHh-CCCcE
Confidence 0 011 1122233 58899999999999999999985544443322 125799999988884 7 69999
Q ss_pred EEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 318 CRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 318 akltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+.++|+| +|+++|++++.++++.+.+
T Consensus 284 a~~SGaG--Ptv~~l~~~~~a~~v~~~l 309 (332)
T 3qt5_A 284 YFTMDAG--PNVKVLVEKKNKQAVMEQF 309 (332)
T ss_dssp EEECCSS--SCEEEEEEHHHHHHHHHHH
T ss_pred EEEeCCC--CcEEEEECHHHHHHHHHHH
Confidence 9999886 9999999987777776654
No 21
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.93 E-value=1.6e-25 Score=206.55 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=165.0
Q ss_pred EEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEE
Q psy9976 22 WIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101 (349)
Q Consensus 22 ~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~ 101 (349)
.++++ +||+++++ +++ ++.+++.+ . .++ ..|.|++..+++.+.+.....+|++|.
T Consensus 31 ~sl~~-ai~l~~~v-~~~--~~~i~i~~-~-----------~~~---------~~~~nlv~~a~~~~~~~~g~~~g~~i~ 85 (271)
T 2v8p_A 31 LTLYQ-EIPFYDEI-YIR--EGVLRVET-N-----------IGI---------PQEENLVYKGLREFERITGIEINYSIF 85 (271)
T ss_dssp EEEEE-EEEEEEEE-EEE--ESSCEEEE-S-----------SCC---------CTTTCHHHHHHHHHHHHHCCCCCEEEE
T ss_pred EEEEE-EcCcccEE-EEe--CCeEEEEe-C-----------CCC---------CCCchHHHHHHHHHHHHhCCCCCeEEE
Confidence 48989 99999999 877 44566554 1 011 136789999888776542223799999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCe
Q psy9976 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHE 181 (349)
Q Consensus 102 i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~ 181 (349)
+.++||+++|||||||.++|++.|++++++.++ ++++++++|.++|. |..++++|| +.+....+..
T Consensus 86 i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l-~~~el~~la~~~e~----------dv~~~~~gg---~~~~~g~g~~ 151 (271)
T 2v8p_A 86 IQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPL-SEEELRELVGSISA----------DAPFFLLGK---SAIGRGKGEV 151 (271)
T ss_dssp EECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCS-CHHHHHHHHHHHCT----------TTGGGGTCS---EEEEETTTTE
T ss_pred EEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHhCC----------CHHHHhcCC---eEEEEEcCCE
Confidence 999999999999999999999999999999999 99999999999972 888889998 5666555556
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHH
Q psy9976 182 ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTE 261 (349)
Q Consensus 182 ~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e 261 (349)
++++++| +++++++++|+++.+|. . +.+.+... . +
T Consensus 152 ~~~l~~~--~~~~~vl~~p~~~~sT~-~-----------~~~~~~~~-------------------~------------~ 186 (271)
T 2v8p_A 152 LEPVETE--ISGKITLVIPQVSSSTG-R-----------VYSSLREE-------------------H------------F 186 (271)
T ss_dssp EEECCCC--CCSEEEEEECSSCCCHH-H-----------HHHTCCTT-------------------S------------C
T ss_pred EEEccCC--CCcEEEEEeCCCCCCHH-H-----------HHHhcccc-------------------c------------C
Confidence 6776632 27899999999876653 1 11111100 0 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEE-ecccCccceeEEEeCCC-chh
Q psy9976 262 IDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCR-MTGGGFGGCAIALVSPL-NLR 339 (349)
Q Consensus 262 ~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gak-ltGaG~GG~~i~l~~~~-~~~ 339 (349)
.|+..+ .+|.++|++.++++|+. .++..-...+|+++.+++.+++ .|+ ++ |||+| +|+++|++++ .++
T Consensus 187 -~~~~~~-~al~~~d~~~~~~~~~n---~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~~~a~ 256 (271)
T 2v8p_A 187 -VTPEYA-EEKIQRIISGEVEEIEN---VLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGASEELK 256 (271)
T ss_dssp -CCHHHH-HHHHHHHHTTCGGGCCB---HHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCCHHHH
T ss_pred -cchhHH-HHhhcCCHHHHHHHHhC---ChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCHHHHH
Confidence 123344 77888888888887731 1222112368999999999999 597 99 99998 8999999875 344
Q ss_pred hh
Q psy9976 340 RG 341 (349)
Q Consensus 340 ~~ 341 (349)
++
T Consensus 257 ~~ 258 (271)
T 2v8p_A 257 KA 258 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 22
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.91 E-value=1.4e-23 Score=193.79 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=157.9
Q ss_pred EEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCCCCceEEE
Q psy9976 22 WIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101 (349)
Q Consensus 22 ~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~~~g~~i~ 101 (349)
.++++ +||+++++.+++ + .+++.+.. .++ ..|++..+++.+.+......|++|.
T Consensus 27 ~sl~~-ai~l~~~v~~~~--~-~~~i~~~~-----------~~~-----------~~n~v~~a~~~~~~~~g~~~g~~i~ 80 (275)
T 1uek_A 27 HTLFA-PFSLADRLVVEP--V-SSGLHFQG-----------PYG-----------RENLAYRAASLYLEAAGQPGGVRIL 80 (275)
T ss_dssp EEEEE-EEEEEEEEEEEE--E-SSCEEEES-----------TTG-----------GGSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEE-EcCCCCEEEEEE--C-cEEEEEcC-----------CCC-----------CccHHHHHHHHHHHHhCCCCCEEEE
Confidence 38889 999999999877 2 33333321 010 1378988888776543334699999
Q ss_pred EEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEEecCCCe
Q psy9976 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHE 181 (349)
Q Consensus 102 i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~~~~ 181 (349)
+.++||+++|||||||+++|++.|++++++.++ +++++|.++|. |++++++|| +.+....+..
T Consensus 81 i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l----~l~~la~~~g~----------dv~~~~~Gg---~~~~~g~g~~ 143 (275)
T 1uek_A 81 LEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV----DLFALARTLGA----------DVPFFLLGR---GAEARGVGER 143 (275)
T ss_dssp EECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC----CHHHHHHHHCT----------THHHHHHCS---EEEEETTTTE
T ss_pred EecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh----HHHHHHHHhCC----------ChHHHhcCC---eEEEEccCce
Confidence 999999999999999999999999999999876 78888888752 999999998 5666655556
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHH
Q psy9976 182 ARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTE 261 (349)
Q Consensus 182 ~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e 261 (349)
+++++ + |++++++++|+.+.+|. ++.+.+..+..+. ..
T Consensus 144 ~~~l~-~--~~~~~vl~~p~~~~sT~------------~~~~~~~~~~~~~--------------~~------------- 181 (275)
T 1uek_A 144 LKPLA-L--PPVPAVVFFPGLRVPTP------------LVYRAVRPEDFGP--------------DL------------- 181 (275)
T ss_dssp EEEEC-C--CCEEEEEEECCCCCCHH------------HHHHTCCGGGCCC--------------CC-------------
T ss_pred eEEcc-C--CCcEEEEEeCCCCCchH------------HHHHhCchhhccc--------------CC-------------
Confidence 77776 3 58999999999877753 1222222110000 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEecccCccceeEEEeCCC-chhh
Q psy9976 262 IDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPL-NLRR 340 (349)
Q Consensus 262 ~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGaG~GG~~i~l~~~~-~~~~ 340 (349)
++..+..+|.++ ++. +.||. ++.....++|+++.+++.+++ .|++|++|||+| +|+++|++++ .+++
T Consensus 182 --~~~~~~~al~~~-~~~--~~~n~----l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~ 249 (275)
T 1uek_A 182 --PVEAILEALARG-EEP--PYWNS----LEGPAFRLFPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARR 249 (275)
T ss_dssp --CHHHHHHHHHHT-CCC--SCCBT----THHHHHHHCTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHH
T ss_pred --ChHHHHHHHHhc-ccc--ccccc----hHHHHHHhChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHH
Confidence 022344555544 322 22322 111111257999999999999 699999999998 7999999875 5666
Q ss_pred hhhhcc
Q psy9976 341 GRKKKS 346 (349)
Q Consensus 341 ~~~~~~ 346 (349)
+.+.++
T Consensus 250 ~~~~l~ 255 (275)
T 1uek_A 250 AAEALR 255 (275)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 666543
No 23
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.91 E-value=7.1e-24 Score=196.72 Aligned_cols=236 Identities=14% Similarity=0.117 Sum_probs=162.0
Q ss_pred hhhceeeeCCcEEEecccccceEEEEEEecCCCeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHh
Q psy9976 11 LKSLMVKKRLQWIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFND 90 (349)
Q Consensus 11 ~~~~~~~~~~G~vl~~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~ 90 (349)
.||+.=-+|.+.++++ +||+++++.+++++++.+++.+... .++ ...|++..+++.+.+
T Consensus 18 ~g~~~dGyh~l~sl~~-ai~l~~~v~v~~~~~~~i~i~~~~~----------~~~----------~~~nlv~~a~~~~~~ 76 (283)
T 2ww4_A 18 TGQRADGYHTLQTLFQ-FLDYGDTISIELRDDGDIRLLTPVE----------GVE----------HEDNLIVRAARLLMK 76 (283)
T ss_dssp EEECTTSCEEEEEEEE-EEEEEEEEEEEEESSSCEEECSCBT----------TBC----------GGGSHHHHHHHHHHH
T ss_pred cCCCCCCCcceEEEEE-ECCCCcEEEEEECCCCcEEEEeCCC----------CCC----------CcccHHHHHHHHHHH
Confidence 4554211344458889 9999999999988777777654310 011 014799888887755
Q ss_pred c-------CCCCCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHH
Q psy9976 91 R-------VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV 163 (349)
Q Consensus 91 ~-------~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a 163 (349)
. +. .+|++|.+.++||+|+|||||||+++|++.|++++++.++ ++++++++|.++|. |.++
T Consensus 77 ~~~~~~~~g~-~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l-~~~~l~~la~~~e~----------dv~~ 144 (283)
T 2ww4_A 77 TAADSGRLPT-GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGL-SMDELAEMGLTLGA----------DVPV 144 (283)
T ss_dssp HHHHTTCSCT-TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHTTCT----------THHH
T ss_pred HhhhhcccCC-CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHhCC----------CHHH
Confidence 3 43 5799999999999999999999999999999999999999 99999999998863 9999
Q ss_pred HHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHh
Q psy9976 164 SVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHA 243 (349)
Q Consensus 164 ~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~ 243 (349)
+++|| ..+....+..++++++ |++.+++++|+++.+|. . .++.... +.+
T Consensus 145 ~~~gg---~~~~~g~g~~~~~l~~---~~~~~vl~~p~~~~sT~-~--------------~~~~~~~---~~~------- 193 (283)
T 2ww4_A 145 FVRGH---AAFAEGVGEILTPVDP---PEKWYLVAHPGVSIPTP-V--------------IFKDPEL---PRN------- 193 (283)
T ss_dssp HHHTB---CEEEETTTTEEEECCC---CCCEEEEECCSCCCCHH-H--------------HHTCTTS---CCC-------
T ss_pred hhcCC---eEEEEecCccceEcCC---CCcEEEEEeCCCCCchH-H--------------HHhcccc---ccc-------
Confidence 99998 4555555556666654 47889999999987753 1 1111000 000
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHcCCCCeEEEeccc
Q psy9976 244 QKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGG 323 (349)
Q Consensus 244 ~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~~~Ga~gakltGa 323 (349)
+... . . .+|.++++ +|..+. . ....+|+++.+++.+++ .| +++|||+
T Consensus 194 -~~~~---------~------l----~~l~~~~~------~nd~~~-~---~~~~~p~l~~i~~~~~~-~G--~a~~SGs 240 (283)
T 2ww4_A 194 -TPKR---------S------I----ETLLKCEF------SNDCEV-I---ARKRFREVDAVLSWLLE-YA--PSRLTGT 240 (283)
T ss_dssp -CCCC---------C------H----HHHHTSCC------CBTTHH-H---HHHHCHHHHHHHHHHHT-TS--CEEECTT
T ss_pred -chHH---------H------H----HHHHhhhh------cCchHH-H---HHhcChHHHHHHHHHHH-cC--CceECCc
Confidence 0000 0 0 01222221 111111 1 12358999999999999 58 8999999
Q ss_pred CccceeEEEeCCCc-hhhhhhhc
Q psy9976 324 GFGGCAIALVSPLN-LRRGRKKK 345 (349)
Q Consensus 324 G~GG~~i~l~~~~~-~~~~~~~~ 345 (349)
| +|+++|++++. ++++.+.+
T Consensus 241 G--~tvf~l~~~~~~a~~~~~~l 261 (283)
T 2ww4_A 241 G--ACVFAEFDTESEARQVLEQA 261 (283)
T ss_dssp S--SCEEEEESSHHHHHHHHHHC
T ss_pred c--cceEEEeCCHHHHHHHHHHh
Confidence 7 99999998753 66666654
No 24
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.87 E-value=1.1e-20 Score=184.20 Aligned_cols=219 Identities=17% Similarity=0.090 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHhcCCC------------CCceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q psy9976 78 ANYVKGVVSIFNDRVAP------------VPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQ 145 (349)
Q Consensus 78 ~~~v~~~~~~l~~~~~~------------~~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~ 145 (349)
.|+++.++..+.+.... ..|++|.+.++||.++|||||||.++|++.|++++++.++ ++++|+++|.
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~L-s~~eLa~lA~ 170 (416)
T 1fi4_A 92 NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQ-STSEISRIAR 170 (416)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCS-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHh
Confidence 36777887776553211 4689999999999999999999999999999999999999 9999999998
Q ss_pred HHHHhhcCCCChhhHHHHHHhccCCeEEEEecC------CCeeEEeeCC-CCCCeE--EEEEeCCCCcccChhhHHHHHH
Q psy9976 146 EAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCK------THEARHIPLG-DDHQYV--FLIINSNVHHELSSSEYAVRRA 216 (349)
Q Consensus 146 ~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~d~~------~~~~~~l~~~-~~~~~~--~ll~~s~~~~~~~~~~y~~r~~ 216 (349)
+.+ | +...++||| ++..+.. .....+++.+ ..|+++ +++.+++.+...++..|+.++.
T Consensus 171 ~g~--------G--s~~~sl~GG---~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~~~ 237 (416)
T 1fi4_A 171 KGS--------G--SACRSLFGG---YVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVA 237 (416)
T ss_dssp HHH--------G--GGGGGGSSS---EEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHHHH
T ss_pred ccC--------C--chheEeeCC---cEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHHhh
Confidence 764 2 556789999 5554422 1223555432 114676 4445554444333444433221
Q ss_pred HHHHHHHHhchhccCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccc-
Q psy9976 217 QCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDY- 295 (349)
Q Consensus 217 ~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~r~~~~i~e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~~~- 295 (349)
. .+....++.++ ...|+..++.||.++|++.||++|.++|..++..+
T Consensus 238 ~------------------------------~~~~~~~~~~i--~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~ 285 (416)
T 1fi4_A 238 T------------------------------SELFKERIEHV--VPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCL 285 (416)
T ss_dssp H------------------------------CSHHHHHHHTH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred c------------------------------CHhHHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 0 00011112221 12468899999999999999999988877776532
Q ss_pred ------CCCChhHHHHHHHHHcC---CC-CeEEEecccCccceeEEEeCCCchhhhhhh
Q psy9976 296 ------EVSCKELDDIAHCAQSL---PG-VLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 296 ------~vs~p~ld~l~~~a~~~---~G-a~gakltGaG~GG~~i~l~~~~~~~~~~~~ 344 (349)
....|....+++.+.+. .| +.++-++|+| +++++|++++.++++.+.
T Consensus 286 ~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~~~~~v~~~ 342 (416)
T 1fi4_A 286 DSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAENESKLFAF 342 (416)
T ss_dssp TSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGGGHHHHHHH
T ss_pred ccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHHHHHHHHHH
Confidence 23556777777665442 27 6788899887 999999987766665543
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.81 E-value=6.7e-18 Score=162.76 Aligned_cols=249 Identities=13% Similarity=0.107 Sum_probs=158.7
Q ss_pred EEeccccc---ceEEEEEEecCC-CeEEEEecCCCCCCCCceEEeCCCcccCCCCCcCHhHHHHHHHHHHHhcCCC---C
Q psy9976 23 IIMMDVRQ---VVTVLLGSRNNS-NQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAP---V 95 (349)
Q Consensus 23 vl~~~Ai~---~~~~v~~~~~~d-~~i~v~s~~~~~~~~~~~~~~l~~~~~l~~~~~~w~~~v~~~~~~l~~~~~~---~ 95 (349)
.|.+ |+| .++.++++..++ ...++..... ..+. .-.+.+..++..+.+.... .
T Consensus 36 slgl-aL~~~~l~~~~~v~~~~~~~~~~i~i~g~--------~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~ 95 (380)
T 2hke_A 36 SFSI-TLSASPFRSKTSVELRDDIETDTLRLNGT--------EVDV-----------GKTPRVQSMLLHLRSTCPEELKN 95 (380)
T ss_dssp EEEE-EBCSSSCCEEEEEEEESSCSSCEEEETTE--------EECG-----------GGCHHHHHHHHHHHTSSCHHHHT
T ss_pred ceEE-EecCCCCceEEEEEECCCCCccEEEECCc--------ccCc-----------hhHHHHHHHHHHHHHHhcccCCC
Confidence 6778 999 788888876432 1233332210 0010 0136888888888765332 5
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
.|++|.+.++||.++|||||||..+|++.|++++++.+ +++++++.+.+ | |...|+||| ++..
T Consensus 96 ~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~----~eL~~lA~~g~--------G--sva~s~~GG---~v~~ 158 (380)
T 2hke_A 96 KKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST----TNVSMLARLGS--------G--SACRSAFGG---FVIW 158 (380)
T ss_dssp CEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS----SCHHHHHHHHC--------G--GGGGGGSSS---EEEE
T ss_pred CCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH----HHHHHHHhhcC--------c--ceeeehhCC---eEEE
Confidence 68999999999999999999999999999999999865 67788887553 2 567799999 5544
Q ss_pred ecC------CCeeEEeeCCC-CCCeEEEEE--eCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhccc
Q psy9976 176 DCK------THEARHIPLGD-DHQYVFLII--NSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKL 246 (349)
Q Consensus 176 d~~------~~~~~~l~~~~-~~~~~~ll~--~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~ 246 (349)
... .....+++.+. .|+++++++ +++.....++..+ .+.+...
T Consensus 159 ~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~----------r~~~~~~------------------ 210 (380)
T 2hke_A 159 NKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGM----------QQSLKTS------------------ 210 (380)
T ss_dssp ECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHH----------HHHHHHC------------------
T ss_pred ecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHH----------HHHHhcC------------------
Confidence 422 12345665431 156764444 3332222122211 1111100
Q ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-------ccCCCChhHHHHHHHHHcC--C-C
Q psy9976 247 LSDEEYKRGHHVVT--EIDRTYKGANALKEGDFETFGKLMNESHDSLRD-------DYEVSCKELDDIAHCAQSL--P-G 314 (349)
Q Consensus 247 l~~~~~~r~~~~i~--e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-------~~~vs~p~ld~l~~~a~~~--~-G 314 (349)
+ .++ +.+. ...++..++.||.++|++.||++|.+++..+.. ......|....+++.+.+. . |
T Consensus 211 -~--~~~---~~~~~~~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~G 284 (380)
T 2hke_A 211 -P--LMK---KRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKG 284 (380)
T ss_dssp -T--THH---HHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred -h--hHH---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcC
Confidence 0 001 1222 234588899999999999999999765554442 1344778878887776541 3 8
Q ss_pred -CeEEEecccCccceeEEEeCCCchhhhhhh
Q psy9976 315 -VLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344 (349)
Q Consensus 315 -a~gakltGaG~GG~~i~l~~~~~~~~~~~~ 344 (349)
+.++.++||| +++++|++++.++++.+.
T Consensus 285 a~~~a~~SGaG--Ptv~~l~~~~~~~~v~~~ 313 (380)
T 2hke_A 285 RTALAYTFDAG--ANCFLFVLKEDLPEAVAM 313 (380)
T ss_dssp SCCEEEECCSS--SCEEEEEEGGGHHHHHHH
T ss_pred CcceEEEECCC--CcEEEEECHHHHHHHHHH
Confidence 7789999876 999999987666665543
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.74 E-value=3.5e-16 Score=146.69 Aligned_cols=208 Identities=15% Similarity=0.081 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEEeCCCCCCCCChHHHHHHHHH----HHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCC
Q psy9976 80 YVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATY----TFLESITDEKTLKLTDKALACQEAEHSFAGVP 155 (349)
Q Consensus 80 ~v~~~~~~l~~~~~~~~g~~i~i~s~iP~g~GLgSSaA~~vA~~----~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~ 155 (349)
.++.+++.++ ...|++|.+.++||.++|||||||..||++ .|+++++++++.+++++.++|...+
T Consensus 79 ~i~~~l~~~~----~~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs------- 147 (323)
T 3lto_A 79 HLVRLKEYFG----YVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS------- 147 (323)
T ss_dssp HHHHHHHHHT----CCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC-------
T ss_pred HHHHHHHHhC----CCCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-------
Confidence 4444444443 345899999999999999999999999999 9999999988537889999986442
Q ss_pred ChhhHHHHHHhccCCeEEEEecCCCeeEEeeCCCCCCeEEEEEe-CCC--CcccChhhHHHHHHHHHHHHHHhchhccCC
Q psy9976 156 CGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN-SNV--HHELSSSEYAVRRAQCKSVLDKLHRVSFRD 232 (349)
Q Consensus 156 ~G~~D~~a~~~gg~~~~~~~d~~~~~~~~l~~~~~~~~~~ll~~-s~~--~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~ 232 (349)
| +...|+||| ++..... ..+++..+. |++.++++. +.. +.+|+ .+.+.+....
T Consensus 148 -G--saa~si~GG---~v~~~~g--~~~~l~~~~-~~l~~~v~vi~~~~~~vsT~------------~~~~~l~~~~--- 203 (323)
T 3lto_A 148 -G--SSCRSFYAP---WALWTGD--KVSAIDLPY-KDLLHQVIVISSQEKEIPSR------------VAHKLVKTSP--- 203 (323)
T ss_dssp -G--GGGGGGSCS---EEEEETT--EEEECCCSC-CSCEEEEEECCCCTTCCCHH------------HHHHHGGGST---
T ss_pred -C--CcchhhhCC---EEEEecC--cEEEccCCC-CCCeEEEEEECCCCCCCCCH------------HHHhhcccCh---
Confidence 3 456699999 5544322 334443122 466654433 222 22332 1122222100
Q ss_pred CCHHHHHHHHhcccCCHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-------ccCCCChhHHH
Q psy9976 233 VSLKSLEDKHAQKLLSDEEYKRGHHVVT-EIDRTYKGANALKEGDFETFGKLMNESHDSLRD-------DYEVSCKELDD 304 (349)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~r~~~~i~-e~~rv~~~~~al~~~d~~~lg~lm~~s~~~lr~-------~~~vs~p~ld~ 304 (349)
+- ...+. ...++..++.||.++|++.|+++|..++..|.. .+....|+...
T Consensus 204 --------------~~-------~~~~~~~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~ 262 (323)
T 3lto_A 204 --------------FY-------ETRSERAEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLH 262 (323)
T ss_dssp --------------TT-------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHH
T ss_pred --------------hH-------HHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHH
Confidence 00 01111 223588999999999999999987655544443 12346777777
Q ss_pred HHHHHHcC---CCCeEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 305 IAHCAQSL---PGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 305 l~~~a~~~---~Ga~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
+++.+.++ .|++++.++||| +.+++|++++..+++.+.+
T Consensus 263 i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~l~~~~~~~~v~~~l 304 (323)
T 3lto_A 263 ILSVIEKFWNEKGDGPVVTMDAG--PNVHLLYRSDQTDLARQFK 304 (323)
T ss_dssp HHHHHHHHHHHHSCCCEEECCSS--SCEEEEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCC--CCeEEEEecccHHHHHHHH
Confidence 76666442 489999999998 8889999988877766543
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.68 E-value=3.3e-15 Score=143.26 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=132.8
Q ss_pred CceEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhcCCCChhhHHHHHHhccCCeEEEE
Q psy9976 96 PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLI 175 (349)
Q Consensus 96 ~g~~i~i~s~iP~g~GLgSSaA~~vA~~~al~~~~~~~~~~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~gg~~~~~~~ 175 (349)
.|++|.+.++||.++|||||||..+|++.|++++++++ +++.++|...+ | +...|+||| ++..
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l~----~el~~lA~~~s--------G--s~~~s~~GG---~v~w 184 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGVE----GDLSEVARRGS--------G--SACRSLYGG---FVEW 184 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTCC----SCCHHHHHHHC--------G--GGGGGGSSS---EEEE
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCCh----HHHHHHHHHhC--------C--CcchHhhCC---EEEE
Confidence 48999999999999999999999999999999999973 36667776552 3 456699999 5655
Q ss_pred ecC------CCeeEEeeCCCC-CCeEEEEEeCCCCcccChhhHHHHHHHHHHHHHHhchhccCCCCHHHHHHHHhcccCC
Q psy9976 176 DCK------THEARHIPLGDD-HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248 (349)
Q Consensus 176 d~~------~~~~~~l~~~~~-~~~~~ll~~s~~~~~~~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~~~l~ 248 (349)
... .....+++.+.. |+++++++.......+..+.- . +.+.+.. +
T Consensus 185 ~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~-----~---mr~~l~t--------------------s 236 (414)
T 3f0n_A 185 QMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTV-----G---MQTSVET--------------------S 236 (414)
T ss_dssp CCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHH-----H---HHHHHHH--------------------C
T ss_pred EeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchH-----H---HHhhccc--------------------C
Confidence 321 112355543211 578877666443333222110 0 0011110 1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHH----HHhhhc---ccCCCChhHHHHHHHHHcCC----CC
Q psy9976 249 DEEYKRGHHVVTE--IDRTYKGANALKEGDFETFGKLMNES----HDSLRD---DYEVSCKELDDIAHCAQSLP----GV 315 (349)
Q Consensus 249 ~~~~~r~~~~i~e--~~rv~~~~~al~~~d~~~lg~lm~~s----~~~lr~---~~~vs~p~ld~l~~~a~~~~----Ga 315 (349)
. ...+.+.. ..|+..++.||.++|++.||+++..+ |..+++ .+...+|+...+++.+.++. |+
T Consensus 237 ~----~~~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~ 312 (414)
T 3f0n_A 237 T----LLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQT 312 (414)
T ss_dssp H----HHHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSC
T ss_pred c----cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCc
Confidence 1 12233333 35689999999999999999987644 333333 23446888888888877642 78
Q ss_pred eEEEecccCccceeEEEeCCCchhhhhhhc
Q psy9976 316 LGCRMTGGGFGGCAIALVSPLNLRRGRKKK 345 (349)
Q Consensus 316 ~gakltGaG~GG~~i~l~~~~~~~~~~~~~ 345 (349)
.++.++||| +.+++|++++..+++.+.+
T Consensus 313 ~~~~tsdAG--Pnv~vl~~~~~~~~v~~~l 340 (414)
T 3f0n_A 313 KVAYTFDAG--PNAVIFTLEDTVAEFVAAV 340 (414)
T ss_dssp CEEEECCSS--SCEEEEEEHHHHHHHHHHH
T ss_pred eEEEEECCC--CCEEEEEecccHHHHHHHH
Confidence 999999998 8899999888877776654
No 28
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=38.80 E-value=1.3e+02 Score=22.84 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHc
Q psy9976 265 TYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311 (349)
Q Consensus 265 v~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~ 311 (349)
...+..++..+|++.+.++...-|-+.+. +..|.+..++.....
T Consensus 37 ~~~l~~a~~~~d~~~l~~~aHkLkGaa~~---~Ga~~L~~~~~~LE~ 80 (119)
T 3myf_A 37 VEKIQTALGQNDQATMLSTIHKLHGASCY---CGVPTTQRLCQEIES 80 (119)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTT---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHH
Confidence 56677788889999999999888877765 567878777766554
No 29
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=38.31 E-value=1.1e+02 Score=23.35 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHc
Q psy9976 265 TYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311 (349)
Q Consensus 265 v~~~~~al~~~d~~~lg~lm~~s~~~lr~~~~vs~p~ld~l~~~a~~ 311 (349)
...+.+++..+|++.+.++...-|-+.+. +..|.+..++.....
T Consensus 46 ~~~l~~a~~~~d~~~l~~~aHkLkGaa~~---~Ga~~L~~~c~~LE~ 89 (123)
T 3iqt_A 46 RNKVEEQLVGENPEGLVDLIHKLHGSCGY---SGVPRMKNLCQLIEQ 89 (123)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHTT---SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHH
Confidence 56677788889999999999888887765 567888777776554
No 30
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=24.82 E-value=83 Score=24.33 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=39.2
Q ss_pred cCCC-ChhHHHHHHHHHcCCCCeEEEecccCcc------ceeEEEeC--CCchhhhhhhccC
Q psy9976 295 YEVS-CKELDDIAHCAQSLPGVLGCRMTGGGFG------GCAIALVS--PLNLRRGRKKKSL 347 (349)
Q Consensus 295 ~~vs-~p~ld~l~~~a~~~~Ga~gakltGaG~G------G~~i~l~~--~~~~~~~~~~~~~ 347 (349)
..+. -.++..|.+.|++ .|.-..-+.-||+- -+++++-| ++.++++-++|.|
T Consensus 53 lk~~~e~el~~L~~~a~~-~gl~~~~I~DAG~Tei~pgt~TvlaigP~p~~~vd~itg~LkL 113 (123)
T 1rzw_A 53 LKVKSLEELLGIKHKAES-LGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPL 113 (123)
T ss_dssp EECSCHHHHHHHHHHHHH-TTCCEEEECCTTCCSCSTTSCEEEEEEEECHHHHHHHHTCSCC
T ss_pred EecCCHHHHHHHHHHHHH-CCCCEEEEECCCCcccCCCCEEEEEeCcCCHHHHHHhcCCCee
Confidence 4554 4679999999999 58767788888875 45777744 4668889998876
Done!