RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9976
(349 letters)
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 303 bits (777), Expect = e-101
Identities = 126/303 (41%), Positives = 170/303 (56%), Gaps = 8/303 (2%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
T + ++ + ++ L+S A DI F + + K WANYVKGV+ R
Sbjct: 55 TYVAVAKRDDGKVRLYS--ANFGNAGDIFFLLLDIAKEK--IDDWANYVKGVIKALQKRG 110
Query: 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFA 152
G + VI ++P+G+GLSSSAALEVA L+ + + K + A Q AE+ F
Sbjct: 111 YAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKA-ELAKIAQVAENQFV 169
Query: 153 GVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYA 212
GV CGIMDQ S G++ ALL+DC+T E +P +I+NSNV EL+ SEY
Sbjct: 170 GVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVG-GVSIVIVNSNVKRELADSEYN 228
Query: 213 VRRAQCKSVLDKLHRV--SFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGAN 270
RRA+C+ + L S RDV+ + A+ + + +R HVVTE R + A
Sbjct: 229 ERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAK 288
Query: 271 ALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAI 330
AL+ GD FG+LMNESH+SLRDDYEV+C ELD + A + G G RMTG GFGGC I
Sbjct: 289 ALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVI 348
Query: 331 ALV 333
ALV
Sbjct: 349 ALV 351
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 270 bits (692), Expect = 3e-88
Identities = 115/265 (43%), Positives = 162/265 (61%), Gaps = 14/265 (5%)
Query: 77 WANYVKGVVSIFNDRVAPVP-GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTL 135
WANY KGV+ + + GF+ +I ++P G+GLSSSA++E+ T L+ + +
Sbjct: 91 WANYPKGVLKFLQEAGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLD 150
Query: 136 KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIP--LGDDHQY 193
+L + Q+ E+ F GV GIMDQ+ MG++ A+L+DC T E ++P LGD Y
Sbjct: 151 RL-ELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGD---Y 206
Query: 194 VFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV----SFRDVSLKSLEDKHAQKLLSD 249
V +I+N+N EL+ S+Y RRA+C+ L++L + S +++ + D+++ L+ D
Sbjct: 207 VIVIMNTNKRRELADSKYNERRAECEKALEELQKKLDIKSLGELTEEEF-DEYS-YLIKD 264
Query: 250 E-EYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHC 308
E KR H VTE RT K ALK GD E FG+LMN SH SLRDDYEV+ ELD +
Sbjct: 265 ETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEA 324
Query: 309 AQSLPGVLGCRMTGGGFGGCAIALV 333
A GVLG RMTG GFGGCAIA+V
Sbjct: 325 AWKQEGVLGARMTGAGFGGCAIAIV 349
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 267 bits (685), Expect = 8e-88
Identities = 117/292 (40%), Positives = 169/292 (57%), Gaps = 18/292 (6%)
Query: 42 SNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAV 101
S + +S++ +K +F++ K++KL WA+Y+KGV+ + R V G
Sbjct: 39 SEKFIFYSENFNEEK----TFELDKLEKLN----SWADYIKGVIWVLEKRGYEVGGVKGK 90
Query: 102 ILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQ 161
+ S++P+G+GLSSSA+LEVA L + KL + AL +EAE+ F GVPCGIMDQ
Sbjct: 91 VSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKL-ELALLAREAENEFVGVPCGIMDQ 149
Query: 162 YVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSV 221
+ G++ A+ +D T E ++P +D Y L+ ++ V EL+SSEY RR +C+
Sbjct: 150 FAVAFGKKDHAIFLDTMTLEYEYVPFPED--YEILVFDTGVKRELASSEYNERRQECEEA 207
Query: 222 LDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFG 281
L L + S ++V+ + L L KR +V+ E +R K +ALKEGD ET G
Sbjct: 208 LKILGKKSSKEVTEEDLS------KLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLG 261
Query: 282 KLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
+L+ ESH L D+YEVSC+ELD A L G G R+TG GFGG AIALV
Sbjct: 262 ELLTESHWDLADNYEVSCEELDFFVEFALEL-GAYGARLTGAGFGGSAIALV 312
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 265 bits (679), Expect = 2e-86
Identities = 111/261 (42%), Positives = 154/261 (59%), Gaps = 6/261 (2%)
Query: 76 KWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTL 135
+WANYV+GVV +R G + VI +VP G+GLSSSA+LEVA + + L
Sbjct: 91 QWANYVRGVVKHLQERNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLP-L 149
Query: 136 KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVF 195
+ AL QEAE+ F G CGIMDQ +S +G++ ALLIDC++ E + +P+ + V
Sbjct: 150 SGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVV- 208
Query: 196 LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRG 255
IINSNV L SEY RR QC++ + RDV+L+ A+ L KR
Sbjct: 209 -IINSNVKRGLVDSEYNTRRQQCETAARFFGVKALRDVTLEQFNAVAAE--LDPVVAKRA 265
Query: 256 HHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGV 315
HV+TE RT + A+AL GD + G+LM ESH S+RDD+E++ ++D + +++ G
Sbjct: 266 RHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGD 325
Query: 316 L-GCRMTGGGFGGCAIALVSP 335
G RMTGGGFGGC +ALV
Sbjct: 326 QGGVRMTGGGFGGCIVALVPE 346
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 241 bits (617), Expect = 3e-77
Identities = 112/300 (37%), Positives = 153/300 (51%), Gaps = 11/300 (3%)
Query: 51 SARADKPTD-ISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVP-GFNAVILSSVPM 108
A AD S D+P WANY KGV+ + +R P G + V +VP
Sbjct: 65 LANADNKFAERSLDLPLDGSEVS---DWANYFKGVLHVAQERFNSFPLGADIVCSGNVPT 121
Query: 109 GSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168
GSGLSSSAA E A L+++ L L Q AE+ F GV CGIMDQ SV+G+
Sbjct: 122 GSGLSSSAAFECAVGAVLQNMGHLP-LDSKQILLRIQVAENHFVGVNCGIMDQAASVLGK 180
Query: 169 EGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKS---VLDKL 225
E ALL++C++ +A F+I N+NV L+ S Y RR +C + L
Sbjct: 181 EDHALLVECRSLKATPFKF-PQLGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLAAT 239
Query: 226 HRVSFRDVSLKSLEDKHAQ-KLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLM 284
+ + RD + A+ + +R HVV+E R K A+K+ DF+ FG LM
Sbjct: 240 DKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALM 299
Query: 285 NESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKK 344
NESH S DDYE +C E+D++ A + G G RMTG GFGGC + LV N+ + R+
Sbjct: 300 NESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQA 359
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 206 bits (526), Expect = 8e-64
Identities = 111/285 (38%), Positives = 145/285 (50%), Gaps = 12/285 (4%)
Query: 51 SARADKPTDISFDIPKVQKLTPGAPK-WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMG 109
S RAD I D TPG WA Y GV+ PVPG I S V +G
Sbjct: 50 SDRADGSARIPLDT------TPGQVTGWAAYAAGVIWALRGAGHPVPGGAMSITSDVEIG 103
Query: 110 SGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEE 169
SGLSSSAALE A + + T + +L LA Q AE+ + G P G++DQ ++ G
Sbjct: 104 SGLSSSAALECAVLGAVGAATGTRIDRLEQARLA-QRAENEYVGAPTGLLDQLAALFGAP 162
Query: 170 GSALLIDCKTHEARHIPLG-DDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV 228
+ALLID + R + D V L+++S H + EYA RRA C+ L
Sbjct: 163 KTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGVS 222
Query: 229 SFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESH 288
S R V + L A + + +R HV+TE R A AL + DF G+L+ SH
Sbjct: 223 SLRAVQDRGLAALGA--IADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASH 280
Query: 289 DSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
S+RDD+E++ + +D IA A G LG RMTGGGFGGC IALV
Sbjct: 281 ASMRDDFEITTERIDLIADSAVRA-GALGARMTGGGFGGCVIALV 324
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 133 bits (336), Expect = 2e-35
Identities = 83/301 (27%), Positives = 126/301 (41%), Gaps = 24/301 (7%)
Query: 57 PTDISFDIPKVQKLTPGAPK-------WANYVKGVVSIFNDR-VAPVPGFNAVILSSVPM 108
++ F + ++Q W +Y +G V R A G I S +
Sbjct: 82 EGEVRFRVDEIQHPIANVSSDSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGL 141
Query: 109 -GSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMG 167
SGLSSSAA+ VA LE+ + T+ D + E+ + G+ GI+DQ ++
Sbjct: 142 DSSGLSSSAAVGVAYLLALENANN-LTVSPEDNIELDRLIENEYLGLRNGILDQSAILLS 200
Query: 168 EEGSALLIDCKTHEARHIPLGDDHQ------YVFLIINSNVHHEL-SSSEYAVRRAQCKS 220
G +DCKT + + + L Q + L+ S + H L + Y +R ++C+
Sbjct: 201 RYGCLTFMDCKTLDHKLVSL-QFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQE 259
Query: 221 VLDKLHRVSFRD-----VSLKSLEDKHAQK-LLSDEEYKRGHHVVTEIDRTYKGANALKE 274
L S D + E A K L +R H +E R KG A
Sbjct: 260 AARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWAS 319
Query: 275 GDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVS 334
G+ E FGKL++ S S ++YE C+ L + PGV G R +G GF GC +A V
Sbjct: 320 GNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVD 379
Query: 335 P 335
Sbjct: 380 A 380
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 121 bits (306), Expect = 4e-31
Identities = 88/316 (27%), Positives = 144/316 (45%), Gaps = 64/316 (20%)
Query: 77 WANYVKGVVSIFNDRV------APVPGFNAVILSSVPMGSGLSSSAALEVA--------- 121
W +V+G ++ +R+ + G V+ ++PMG+G+S+SA+ VA
Sbjct: 108 WTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVV 167
Query: 122 -------------TYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGE 168
Y+ L ++ E+ ++L +A + E F GV GIMDQ++S E
Sbjct: 168 TRRYKGCPTSPGRRYSILPPMSKEELIELAKQA---RRIETEFCGVNVGIMDQFISAFAE 224
Query: 169 EGSALLIDCK--THEARHIP--LGDDHQYVFLIINSNVHHEL---SSSEYAVRRAQCKSV 221
E + +DCK T E+ + LGD FL+I+S + H+L ++ Y R+ +
Sbjct: 225 EDKFMFLDCKSLTFESHDMTPLLGDGA--CFLLIDSMIKHDLLGGTAGMYNTVRSDQEGA 282
Query: 222 LDKL--HRV-----SFRDVSL---KSLEDKHA-------QKLLSDEEYKRGHHVVTEIDR 264
K+ HR +F D+ K D + L++ E++RG + + E R
Sbjct: 283 QKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNIMEQIR 342
Query: 265 TYK------GANAL-KEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLG 317
T + L +E F G+++N H +RD +++ ELD I GV G
Sbjct: 343 TLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAG 402
Query: 318 CRMTGGGFGGCAIALV 333
RM GGGFGGC I L+
Sbjct: 403 GRMMGGGFGGCIILLL 418
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 89.3 bits (222), Expect = 3e-20
Identities = 67/278 (24%), Positives = 105/278 (37%), Gaps = 52/278 (18%)
Query: 79 NYVKGVVSIFND--RVAPVPGFNAVILSSVPMGSGLSSSAALEVAT----YTFL-ESITD 131
Y++ V + ++ + + F+ I S +P+G+GL SSAA+ VA + ++
Sbjct: 63 GYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSP 122
Query: 132 EKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDH 191
E+ KL +K E G G +D G G E I L
Sbjct: 123 EELAKLANKV------ELIVQGKASG-IDIATITYG--GLVAFKKGFDFEKLEIELLG-- 171
Query: 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251
+I ++ V S++ V + + + D
Sbjct: 172 --TLVIGDTGVPG---STKELVAGVA---------------------KLLEEEPEVIDPI 205
Query: 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311
+V E + AL+ GDFE G+LMN + L VS ELD++ A+S
Sbjct: 206 LDAIGELVQEAEA------ALQTGDFEELGELMNINQGLL-KALGVSTPELDELVEAARS 258
Query: 312 LPGVLGCRMTGGGFGGCAIALVSPLNLRRGRKKKSLDA 349
L G LG ++TG G GGC IAL + + A
Sbjct: 259 L-GALGAKLTGAGGGGCIIALAKNEEIAETLSNRLEKA 295
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 84.3 bits (209), Expect = 1e-18
Identities = 71/256 (27%), Positives = 107/256 (41%), Gaps = 46/256 (17%)
Query: 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLT 138
+YV +S F++ P I S +P G GL SSAA+ VA + ++ D +L+
Sbjct: 63 SYVAEALSYFSELNPPP--LEITIDSEIPPGRGLGSSAAVAVA---LIRALADYFGSELS 117
Query: 139 DKALA--CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFL 196
+ LA EAE G P GI D S G + K + D F+
Sbjct: 118 KEELAELANEAEKIAHGKPSGI-DTATSTS---GGPVYF-EKGEGEFTKLISLD--GYFV 170
Query: 197 IINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGH 256
I ++ V S+ E AV R ++ L ++ + + D
Sbjct: 171 IADTGVSG--STKE-AVAR-------------------VRQLLERFPELI--DSIMDA-- 204
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
+ E+ AL++GD E+ G+LMN + L VS +LD + A+ G L
Sbjct: 205 --IGELTLE--AKAALEDGDVESLGELMNINQGLL-KALGVSHPKLDQLVEIARKA-GAL 258
Query: 317 GCRMTGGGFGGCAIAL 332
G ++TG G GGC IAL
Sbjct: 259 GAKLTGAGGGGCMIAL 274
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 78.6 bits (194), Expect = 5e-16
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 234 SLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFET-----FGKLMNESH 288
SL L+ KL ++R HV +E R + + + E G LMNESH
Sbjct: 349 SLAVLKAAKHFKL-----HQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESH 403
Query: 289 DSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
S YE SC EL+++ + G LG R+TG G+GGCA+ALV
Sbjct: 404 YSCSVLYECSCPELEELVKVCRD-NGALGARLTGAGWGGCAVALV 447
Score = 72.8 bits (179), Expect = 4e-14
Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 26 MDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYV---- 81
M +RQ V + S ++ + + DK T +F Q++ KW NY
Sbjct: 74 MAIRQDTIVAIRRAEGSKKLRI---ANVNDKYTTCTFPADPDQEVDLANHKWGNYFICGY 130
Query: 82 KGVVSIFNDR---VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLT 138
KGV + V P G + V+ +VP GSGLSSSAAL + +I L T
Sbjct: 131 KGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAI---AIMAALGLNFT 187
Query: 139 DKALA---CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176
K +A C+ H G G MDQ +S+M ++G A LID
Sbjct: 188 KKEVAQFTCKCERHI--GTQSGGMDQAISIMAQQGVAKLID 226
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 74.7 bits (184), Expect = 3e-15
Identities = 75/322 (23%), Positives = 123/322 (38%), Gaps = 85/322 (26%)
Query: 26 MDVRQVVTVLLGSRNNSNQIHLHSDSARA-DKPTDISFDIPKVQKLTPGAPKWANYVKGV 84
+D+R V N + I++ SD + +K +S I K+++
Sbjct: 29 IDLRTYVRAEF----NDDSIYIESDYGKTGEKHPYVSAAIEKMRE--------------- 69
Query: 85 VSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALA- 143
A G I S +P+GSGL SSAA+ VAT + ++ L L+ + +A
Sbjct: 70 -------EADKDGVTVSITSQIPVGSGLGSSAAVTVAT---IGALNRLLGLGLSLEEIAK 119
Query: 144 -CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNV 202
+ E G D YVS M G + I + + +P + ++ +
Sbjct: 120 LGHKVELLVQGAASPT-DTYVSTM---GGFVTIP----DRKKLPFPE---CGIVVGYTGS 168
Query: 203 HHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEI 262
S+ E + K EEY ++ I
Sbjct: 169 SG--STKELVANVRKLK------------------------------EEYP---ELIEPI 193
Query: 263 -----DRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLG 317
+ KG + GD+ + G+LMN + L D VS KEL ++ + A++ G LG
Sbjct: 194 LSSIGKISEKGEELILSGDYVSLGELMNINQ-GLLDALGVSTKELSELIYAART-AGALG 251
Query: 318 CRMTGGGFGGCAIALVSPLNLR 339
++TG G GGC +AL +P
Sbjct: 252 AKITGAGGGGCMVALAAPEKQS 273
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 57.2 bits (139), Expect = 6e-11
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMD 160
I S++P+G+GL SSAAL VA L + L + A EAE GV G
Sbjct: 3 EIESNIPLGAGLGSSAALAVALLLALNELFG-LPLSKEELARLALEAEG-AIGVNSGDDV 60
Query: 161 QYVSVMGE 168
SV G
Sbjct: 61 -AASVYGG 67
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 57.9 bits (140), Expect = 6e-11
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 271 ALKEGDFETFGKLMNESHDS--LRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328
AL+EGD E G+L+NE+ S + ELD++ + L G LG +++G G G
Sbjct: 4 ALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELREL-GALGAKLSGSGGGPT 62
Query: 329 AIALVSP 335
AL
Sbjct: 63 VFALFKD 69
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 58.3 bits (141), Expect = 1e-09
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 241 KHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCK 300
K Q + + + V+E AL++G+ G+LMN +HD + VSC+
Sbjct: 209 KENQPTWFNRLLENYNACVSE------AKEALQKGNLFRVGELMNANHDLCQ-KLTVSCR 261
Query: 301 ELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVS 334
ELD I ++ G LG +M+G G GG +AL +
Sbjct: 262 ELDSIVQTCRTY-GALGAKMSGTGRGGLVVALAA 294
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 40.1 bits (94), Expect = 0.001
Identities = 55/239 (23%), Positives = 87/239 (36%), Gaps = 41/239 (17%)
Query: 104 SSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYV 163
S P GSGL SS+A VA L + E A E E + G DQY
Sbjct: 96 SDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAY-EIEREDLKIVGGKQDQYA 154
Query: 164 SVMGEEGSALLIDCKTHEARHIPLG------DDHQYVFLIINSNVHHELSSSEYAVRRAQ 217
+ G G + E PL + + L+ + + + SSE V Q
Sbjct: 155 AAFG--GFNFMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQ--SSE--VIEDQ 208
Query: 218 CKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDF 277
++V+D ++LE H K L+ Y+ +AL D
Sbjct: 209 VRNVVDG---------DEETLEALHEMKALA-----------------YEMKDALVRNDI 242
Query: 278 ETFGKLMNESHDSLRD-DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
FG++++ ++ + +S +D I A G G +++G G GG + P
Sbjct: 243 PEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKN-GAYGGKLSGAGGGGFLLFFCDP 300
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 34.8 bits (80), Expect = 0.060
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 23/90 (25%)
Query: 97 GFN---AVILSSVPMGSGLSSSAALEV----ATYTFLESIT-----------DEKTLKLT 138
GFN V+ S +P+GSGL SSAA V A +SI+ DE L+L
Sbjct: 126 GFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELV 185
Query: 139 DK-ALACQEAEHSFAGVPCGIMDQYVSVMG 167
+K A E E G P GI D VS G
Sbjct: 186 NKWAF---EGEKIIHGKPSGI-DNTVSTYG 211
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 33.9 bits (78), Expect = 0.085
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 81 VKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVAT 122
++ V ++ G + S +P+GSGL SS+A A
Sbjct: 54 IERCVERVREKYGIPLGVEVEVESEIPVGSGLKSSSAASNAL 95
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 33.9 bits (78), Expect = 0.090
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 81 VKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDK 140
++ +++ + V G + S +P GSGL SS+AL A +E++ K +++ D
Sbjct: 48 IERILTAIRSKFGIVDGLEVEVESEIPAGSGLKSSSALVNAL---VEAVLKAKGVEIDDI 104
Query: 141 ALACQEAEHSF-AGV 154
+ A S AG+
Sbjct: 105 DILRLGARLSKDAGL 119
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 31.0 bits (71), Expect = 0.76
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 97 GFNAVILSSVPMGSGLSSSAALEVAT 122
G S +P+ SGL SS+A AT
Sbjct: 75 GATVRTKSEIPLASGLKSSSAAANAT 100
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 30.5 bits (70), Expect = 1.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 88 FNDRVAPVPGFNAVILSSVPMGSGLSSSAA 117
F +++ PG + ++P+G GL SSAA
Sbjct: 72 FLEKLGKPPGLRIELEKNIPLGRGLGSSAA 101
>gnl|CDD|224364 COG1447, CelC, Phosphotransferase system cellobiose-specific
component IIA [Carbohydrate transport and metabolism].
Length = 105
Score = 28.3 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 266 YKGANALKEGDFETFGKLMNESHDSLRD 293
Y+ A KEGDFE +L+ E++D+L +
Sbjct: 24 YEALKAAKEGDFEEAEELIQEANDALNE 51
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid
metabolism].
Length = 329
Score = 29.2 bits (66), Expect = 3.2
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 75 PKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKT 134
+ V+ F V ++ P +GL+SSAA A ++
Sbjct: 68 EDENEKARRVLDRFRKEYGISFKVKIVSYNNFPTAAGLASSAAGAAA---LAAALNRLYD 124
Query: 135 LKLTDKALA 143
L L D+ L+
Sbjct: 125 LDLDDEFLS 133
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. Homoserine kinase is part of
the threonine biosynthetic pathway.Homoserine kinase is
a member of the GHMP kinases (Galactokinase, Homoserine
kinase, Mevalonate kinase, Phosphomevalonate kinase) and
shares with them an amino-terminal domain probably
related to ATP binding.P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054) [Amino
acid biosynthesis, Aspartate family].
Length = 302
Score = 28.9 bits (65), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 96 PGFNAVILSSVPMGSGLSSSAALEVAT 122
P + ++P+G GL SSAA VA
Sbjct: 79 PPVKVTLEKNIPLGRGLGSSAAAIVAA 105
>gnl|CDD|131798 TIGR02751, PEPCase_arch, phosphoenolpyruvate carboxylase, archaeal
type. This family is the archaeal-type
phosphoenolpyruvate carboxylase, although not every host
species is archaeal. These sequences bear little
resemblance to the bacterial/eukaryotic type. The
members from Sulfolobus solfataricus and
Methanothermobacter thermautotrophicus were verified
experimentally, while the activity is known to be
present in a number of other archaea [Energy metabolism,
Other].
Length = 506
Score = 28.9 bits (65), Expect = 4.6
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 240 DKHA-QKLLSDE-EYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNE-------SHDS 290
D H +KLLS ++ + H + +I TY+ N EG KL+ E ++D
Sbjct: 55 DTHVVRKLLSRYYDFFKEHILGKDIFLTYRVPNPAIEG---AEAKLLLETLESIPRNYDV 111
Query: 291 LRDDY 295
R+ Y
Sbjct: 112 AREFY 116
>gnl|CDD|238133 cd00215, PTS_IIA_lac, PTS_IIA, PTS system, lactose/cellobiose
specific IIA subunit. The bacterial phosphoenolpyruvate:
sugar phosphotransferase system (PTS) is a multi-protein
system involved in the regulation of a variety of
metabolic and transcriptional processes. This family is
one of four structurally and functionally distinct group
IIA PTS system cytoplasmic enzymes, necessary for the
uptake of carbohydrates across the cytoplasmic membrane
and their phosphorylation. This family of proteins
normally function as a homotrimer, stabilized by a
centrally located metal ion. Separation into subunits is
thought to occur after phosphorylation.
Length = 97
Score = 27.2 bits (61), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 266 YKGANALKEGDFETFGKLMNESHDSLR 292
+ A KEGDF +L+ E++DSL
Sbjct: 20 LEALKAAKEGDFAEAEELLEEANDSLN 46
>gnl|CDD|109803 pfam00760, Cucumo_coat, Cucumovirus coat protein.
Length = 205
Score = 28.0 bits (62), Expect = 6.0
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 56 KPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNA---VILSSVPMGSGL 112
+PT Q+L P + Y K VS R+ P P F++ V L +P S L
Sbjct: 69 RPTKTEKGSSFGQRLILPVPV-SEYPKKKVSCVQIRLNPSPKFDSTVWVTLRKLPESSDL 127
Query: 113 SSSA 116
SS A
Sbjct: 128 SSEA 131
>gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional.
Length = 633
Score = 28.7 bits (65), Expect = 6.0
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 238 LEDKHAQKL----LSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFG 281
LE KH + L L D +++++ YK AL E DF G
Sbjct: 479 LEWKHDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSPDG 526
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 28.3 bits (64), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 106 VPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKAL 142
+P+G GL SSAA VA L + + L L+ + L
Sbjct: 86 IPLGRGLGSSAASIVAA---LAAANELAGLPLSKEEL 119
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,454,288
Number of extensions: 1657209
Number of successful extensions: 1305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 38
Length of query: 349
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 251
Effective length of database: 6,590,910
Effective search space: 1654318410
Effective search space used: 1654318410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)