RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9976
(349 letters)
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 388 bits (999), Expect = e-135
Identities = 161/302 (53%), Positives = 211/302 (69%), Gaps = 7/302 (2%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIFNDR 91
TVL+GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+ +
Sbjct: 68 TVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYY--P 125
Query: 92 VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSF 151
AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + + +A CQ+AEHSF
Sbjct: 126 AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDS-GTIAARAQVCQQAEHSF 184
Query: 152 AGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211
AG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D + LI NSNV H L+SSEY
Sbjct: 185 AGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPL-SDPKLAVLITNSNVRHSLASSEY 243
Query: 212 AVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANA 271
VRR QC+ V L + S R+V L+ LE A+ L+S E ++R HVV EI RT + A A
Sbjct: 244 PVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEGFRRARHVVGEIRRTAQAAAA 301
Query: 272 LKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIA 331
L+ GD+ FG+LM ESH SLRDDYEVSC ELD + A ++PGV G RMTGGGFGGC +
Sbjct: 302 LRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVT 361
Query: 332 LV 333
L+
Sbjct: 362 LL 363
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 372 bits (958), Expect = e-128
Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 12/306 (3%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
T L ++ L+S++ K I FD+ +V+K W+NYVKG++ +
Sbjct: 80 TTGLARLREDKKVKLYSENF--PKLGVIEFDLDEVEK--KDGELWSNYVKGMIVMLKGAG 135
Query: 93 APV-PGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSF 151
+ GF +I +P SGLSSSA+LE+ L+ + + + + Q+ E+ +
Sbjct: 136 YEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLN-VPRLELVQLGQKTENDY 194
Query: 152 AGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEY 211
GV GI+DQ+ GE A+ +DC T + +P+ + Y +I+N+N L+ S+Y
Sbjct: 195 IGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPV-ELRDYDIVIMNTNKPRALTESKY 253
Query: 212 AVRRAQCKSVLDKLHRV----SFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYK 267
R A+ + L ++ S ++S + + + + + KR H V E +RT
Sbjct: 254 NERFAETREALKRMQTRLDIQSLGELSNEEFD-ANTDLIGDETLIKRARHAVYENNRTKI 312
Query: 268 GANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGG 327
A G+ FG+L+N SH SL+DDYEV+ ELD +A AQ GVLG RMTG GFGG
Sbjct: 313 AQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGG 372
Query: 328 CAIALV 333
CAIALV
Sbjct: 373 CAIALV 378
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 359 bits (923), Expect = e-124
Identities = 102/301 (33%), Positives = 153/301 (50%), Gaps = 20/301 (6%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
T + ++ ++ L+S + F + ++K W +YVKG+ + +
Sbjct: 33 TKIEAEKHG--EVILYS----EHFGEERKFSLNDLRK----ENSWIDYVKGIFWVLKESD 82
Query: 93 APVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFA 152
V G + ++P+G+GLSSSA+ EV L+ + + K L K L ++AE+ F
Sbjct: 83 YEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLK-LDSLSKVLLAKKAENEFV 141
Query: 153 GVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYA 212
GVPCGI+DQ+ V G EG+ + +D T + +IP D L+ + V EL+SSEYA
Sbjct: 142 GVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKD--VSILVFYTGVRRELASSEYA 199
Query: 213 VRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANAL 272
R+ + L L + S ++V L L K ++V E R + +AL
Sbjct: 200 ERKHIAEESLKILGKGSSKEVREGELSK------LPPLHRKFFGYIVRENARVLEVRDAL 253
Query: 273 KEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIAL 332
KEG+ E GK++ +H L +YEVSCKELD A L G G R+TG GFGG AIAL
Sbjct: 254 KEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKL-GAYGARLTGAGFGGSAIAL 312
Query: 333 V 333
V
Sbjct: 313 V 313
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 302 bits (774), Expect = e-100
Identities = 84/355 (23%), Positives = 143/355 (40%), Gaps = 63/355 (17%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRV 92
++ + + L + + D S +Q + P W NY + +
Sbjct: 87 VLIAVEPVKTYALQLANTN---PLYPDFSTSANNIQ-IDKTKPLWHNYFLCGLKGIQEHF 142
Query: 93 A--PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHS 150
+ G N ++ ++P SGLSSS+AL ++ + L + A C ++E
Sbjct: 143 GLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLG-RNLSKVELAEICAKSER- 200
Query: 151 FAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNV-HHELSSS 209
+ G G MDQ +S + EEG+A LI+ A + L VF+I NS V ++ ++S
Sbjct: 201 YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKL--PSGAVFVIANSCVEMNKAATS 258
Query: 210 EYAVRRAQCKSVLDKLHRV---------------SFRDVSLKSLE--------------- 239
+ +R +C+ L + + +SL+ +
Sbjct: 259 HFNIRVMECRLAAKLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPE 318
Query: 240 ------------------DKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALK---EGDFE 278
+ Q +L + Y+R HV +E R + + E +
Sbjct: 319 EICRCLGISLEELRTQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQ 378
Query: 279 TFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
G+LMN+SH S RD YE SC ELD + + G G R+TG G+GGC +++V
Sbjct: 379 LLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWGGCTVSMV 432
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 216 bits (553), Expect = 5e-69
Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 44/257 (17%)
Query: 77 WANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLK 136
V + I S++P G+ SSAA+ +A + L
Sbjct: 54 EDTLSMAVYASLEYLNITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQ-ADLP 112
Query: 137 LTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFL 196
+ AE P G+ + + K + + +
Sbjct: 113 HDVLEILVNRAEMIAHMNPSGLDAKTCLSDQ-----PIRFIKNVGFTELEMDLSAY--LV 165
Query: 197 IINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGH 256
I ++ V+ + V+ ++
Sbjct: 166 IADTGVYGHTREAIQVVQNKG--------------------------------KDALPFL 193
Query: 257 HVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVL 316
H + E+ T + A+ + D E G++++++H L+ + VS E D + A S G L
Sbjct: 194 HALGEL--TQQAEIAISQKDAEGLGQILSQAHLHLK-EIGVSSLEADSLVETALS-HGAL 249
Query: 317 GCRMTGGGFGGCAIALV 333
G +M+GGG GGC IALV
Sbjct: 250 GAKMSGGGLGGCIIALV 266
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 213 bits (544), Expect = 4e-67
Identities = 54/279 (19%), Positives = 102/279 (36%), Gaps = 41/279 (14%)
Query: 59 DISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAAL 118
+ P + +V G I + SG+ +SA+
Sbjct: 59 QVDDQRPAIPGYIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASD 118
Query: 119 EVATYTFLESITDEKTLKLTDKALA--CQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176
VA L + L LTD+ + E + G P G + + G +L
Sbjct: 119 VVAFSRALSELYQ---LNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGG----LILYR 171
Query: 177 CKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236
+ ++ P+ + +++ + ++ + V + + +
Sbjct: 172 RQNGKSVFKPIAFQQRLYLVVVGTGINASTAKVVNDVHKMKQQ----------------- 214
Query: 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYE 296
Q + Y H+V++ AL++GD + G+LMN +HD R +
Sbjct: 215 -------QPVQFKRLYDNYTHIVSQ------AREALQKGDLQRLGQLMNANHDLCR-QID 260
Query: 297 VSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
VSC+EL+ I ++ G LG +++G G GG A+AL +
Sbjct: 261 VSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAAS 298
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 212 bits (542), Expect = 5e-67
Identities = 56/305 (18%), Positives = 101/305 (33%), Gaps = 54/305 (17%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR- 91
+ + ++I L+ D + ++ +++ + P Y + D
Sbjct: 37 STIEIKETQEDEIILNL----NDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYL 92
Query: 92 -VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALA--CQEAE 148
+ P GF I S +P+ GL SSA++ + T + + +L D +A E
Sbjct: 93 NIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYN---KELKDDEIAKLGYMVE 149
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSS 208
G D ++ N
Sbjct: 150 KEIQGKASI-TDTSTITYKG---------------------------ILEIKNNKFRKIK 181
Query: 209 SEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKG 268
E+ CK ++ + + ++ + + + EID+
Sbjct: 182 GEFEEFLKNCKFLI--------VYAEKRKKKTAELVNEVA--KIENKDEIFKEIDKV--I 229
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGC 328
ALK + E FGKLM ++H+ L+ +S +LD I G ++TG G GGC
Sbjct: 230 DEALKIKNKEDFGKLMTKNHELLK-KLNISTPKLDRIVDIGNR--FGFGAKLTGAGGGGC 286
Query: 329 AIALV 333
I LV
Sbjct: 287 VIILV 291
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 210 bits (537), Expect = 3e-66
Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 47/295 (15%)
Query: 41 NSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNA 100
N+ +I + ++ + + I D+ +++K +V+ F +
Sbjct: 35 NAGKIKVLIEALESGNYSSIKSDV-----YDGMLYDAPDHLKSLVNRFVELNNITEPLAV 89
Query: 101 VILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMD 160
I +++P GL SSAA+ VA K+L + AE G P GI
Sbjct: 90 TIQTNLPPSRGLGSSAAVAVAFVRASYDFLG-KSLTKEELIEKANWAEQIAHGKPSGIDT 148
Query: 161 QYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKS 220
Q + + K H L D ++I++ V + + V +
Sbjct: 149 QTIVSGK-----PVWFQKGHAETLKTLSLDGY--MVVIDTGVKGSTRQAVHDVHKLC--- 198
Query: 221 VLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETF 280
E+ + HV + ++ ++ FE
Sbjct: 199 -----------------------------EDPQYMSHVKHIGKLVLRASDVIEHHKFEAL 229
Query: 281 GKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
+ NE H L+ VS +++ + + G + ++TG G GG + L
Sbjct: 230 ADIFNECHADLK-ALTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKD 282
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 202 bits (515), Expect = 7e-61
Identities = 55/289 (19%), Positives = 100/289 (34%), Gaps = 24/289 (8%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIP---KVQKLTPGAPKWANYVKGVVSIFN 89
+ + + +A K FD+P + P +W+NY K + + +
Sbjct: 71 MLCAVKILDEKNPSITLTNA-DPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAH 129
Query: 90 D----------RVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTD 139
P+ G S +P G GLSS+ A T ++ + D
Sbjct: 130 SYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALATIRANMGKNFDISKKD 189
Query: 140 KALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTH-EARHIPL--GDDHQYVFL 196
AEH + GV G MDQ SV GEE AL ++ + +A +H+ F+
Sbjct: 190 LTRITAVAEH-YVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFV 248
Query: 197 IINSNVHH---ELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYK 253
I N+ V E + + Y +R + + L + S +D + + ++
Sbjct: 249 IANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALP--SHKDNSNSERGNLRDFM 306
Query: 254 RGHHVVTEIDRTYKGANALKEGD-FETFGKLMNESHDSLRDDYEVSCKE 301
++ E + + +L+ ES + + V
Sbjct: 307 DAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEAS 355
Score = 120 bits (301), Expect = 2e-30
Identities = 43/169 (25%), Positives = 59/169 (34%), Gaps = 13/169 (7%)
Query: 172 ALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFR 231
A + L + V S + + + L+ R
Sbjct: 308 AYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTR 367
Query: 232 DVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFET-------FGKLM 284
D + + Y+R HV +E R K + F T FG+LM
Sbjct: 368 DY-----LTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLM 422
Query: 285 NESHDSLRDDYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALV 333
NES S YE SC E + I A + G G R+TG G+GGC I LV
Sbjct: 423 NESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTGAGWGGCTIHLV 470
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 166 bits (422), Expect = 1e-48
Identities = 51/300 (17%), Positives = 96/300 (32%), Gaps = 38/300 (12%)
Query: 38 SRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGV-VSIFNDRVAPVP 96
NS +I +++ A+ K + A+ +KGV I D
Sbjct: 46 EETNSGRIEINAYDAQCCKSYLSMSQLEID--------GEASLIKGVYNRIIRDYRLEPK 97
Query: 97 GFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPC 156
F + P GSGL +S+ + V L + + E E G+
Sbjct: 98 SFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLP-LGDYETSRLAYEIERKDLGLSG 156
Query: 157 GIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRA 216
G DQY + G + D L + + EL SS
Sbjct: 157 GKQDQYAAAFGGFNYMEFLQN-----------DLVIVNPLKMKRWIVDELESSMVLYFTG 205
Query: 217 QCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGD 276
+ +S S + ++ ++ H + + AL +GD
Sbjct: 206 RSRS-------------SAAIINEQKKNTSEGNQTAIEAMHKIKQS--AIDTKLALLKGD 250
Query: 277 FETFGKLMNESHDSLRD-DYEVSCKELDDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
F +++ E ++ + ++ + + A G + +++G G GG + +V P
Sbjct: 251 VGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMFVVEP 309
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 128 bits (321), Expect = 8e-34
Identities = 51/258 (19%), Positives = 83/258 (32%), Gaps = 52/258 (20%)
Query: 94 PVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDK------------- 140
+P + ++ S +P G+GL SSAA V L + +E T L D+
Sbjct: 125 TLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKS 184
Query: 141 -ALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIIN 199
E E G P G+ + + + + + + Q L+ N
Sbjct: 185 INKWAYEGERVIHGNPSGVDNSVST------WGGALRYQQGKMSSLKRLPALQ--ILLTN 236
Query: 200 SNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS--DEEYKRGHH 257
+ V + VR K + LL+ D
Sbjct: 237 TKVPRSTKALVAGVRSRLIK-------------------FPEIMAPLLTSIDAISLECER 277
Query: 258 VVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLPGVLG 317
V+ E+ A A + +LM+ + L V LD + + L
Sbjct: 278 VLGEM------AAAPVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAA--HGLH 328
Query: 318 CRMTGGGFGGCAIALVSP 335
++TG G GGC I L+ P
Sbjct: 329 SKLTGAGGGGCGITLLKP 346
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 98.9 bits (246), Expect = 2e-23
Identities = 48/324 (14%), Positives = 94/324 (29%), Gaps = 40/324 (12%)
Query: 23 IIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWA---N 79
I+ V + +T+ L N++ + + P +L P W
Sbjct: 30 AILTAVNRYITLTLEDSER-NELWIPHY--------ENPVSWPIGGELKPDGEHWTFTAE 80
Query: 80 YVKGVVSIFNDRVAPVPGFNAVILSSVP----MGSGLSSSAALEVATYTFLESITDEKTL 135
+ + + VI + + GL SSAA VA L + +
Sbjct: 81 AINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEIS 140
Query: 136 KLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVF 195
L LA + G D + G I T + + ++ +
Sbjct: 141 MLKKFKLA-ALSHLVVQGNGSC-GDIASCMYGG-----WIAYTTFDQEWVKHRLAYKSLE 193
Query: 196 LIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRG 255
+ + + V + + + + E+ K
Sbjct: 194 WFMKEPWPML---------QIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNY 244
Query: 256 HHVVTEIDR-TYKGANALKEGDFETFGKLMNESHDSLRD-----DYEVSCKELDDIAHCA 309
H +T + + A D E + E+ L++ + L ++A A
Sbjct: 245 QHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSA 304
Query: 310 QSLPGVLGCRMTGGGFGGCAIALV 333
+++ G + +G G G C IA
Sbjct: 305 ENMGG--AGKSSGSGGGDCGIAFS 326
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 73.5 bits (180), Expect = 7e-15
Identities = 40/264 (15%), Positives = 84/264 (31%), Gaps = 33/264 (12%)
Query: 79 NYVKGVVSIFNDRVA----PVPGFNAVILSSVPMGS---GLSSSAALEVATYTFLESITD 131
+ ++ +++ D +A + F+ I + GL SS ++ V ++++
Sbjct: 66 SLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLV---VKALLA 122
Query: 132 EKTLKLTDKALACQEAE-HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGDD 190
L + L + G + D + L+ ++ D
Sbjct: 123 LYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAED-----LVLYQSF---------D 168
Query: 191 HQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDE 250
Q V + + ++ +Q K L+ V + S H + +
Sbjct: 169 RQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVS---SHMVQQIKQN 225
Query: 251 EYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRD-DYEVSCKELDDIAHCA 309
+ E AL++G E + + + L ++ L + +
Sbjct: 226 INQNFLTSSKET--VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEAS 283
Query: 310 QSLPGVLGCRMTGGGFGGCAIALV 333
Q L V + +G G G C IAL
Sbjct: 284 QDLQAV--AKSSGAGGGDCGIALS 305
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 7e-06
Identities = 55/359 (15%), Positives = 108/359 (30%), Gaps = 110/359 (30%)
Query: 2 KTILQRLYLLKSLMVKKRLQ----WIIMMDVRQVVTVLLGSRNNSNQIHLHSDSARADKP 57
KT + L + S V+ ++ W+ + + TVL + QI + ++R+D
Sbjct: 163 KTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHS 220
Query: 58 TDISFDIPKVQKLTPGAPKWANYVKG-----------VVSIFNDRVAPVPGFNAVIL--- 103
++I I +Q K Y + FN + IL
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTT 272
Query: 104 --SSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVP---CGI 158
V LS++ ++ ++T ++ L K L C+ + +P
Sbjct: 273 RFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTT 325
Query: 159 MDQYVSVMGEEGSALLIDCKTH--EARHI-----------------PLGDDHQYVFL-II 198
+ +S++ + D +H+ P + L +
Sbjct: 326 NPRRLSIIA----ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 199 NSNVH----------HELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLS 248
+ H ++ S+ V++KLH+ SL +K
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSD-------VMVVVNKLHK--------YSLVEKQ-----P 421
Query: 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCK-ELDDIA 306
E + E+ + AL H S+ D Y + + DD+
Sbjct: 422 KESTISIPSIYLELKVKLENEYAL---------------HRSIVDHYNIPKTFDSDDLI 465
Score = 46.0 bits (108), Expect = 1e-05
Identities = 30/166 (18%), Positives = 47/166 (28%), Gaps = 48/166 (28%)
Query: 203 HHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVV--- 259
HH E + Q K +L + K ++D + +LS EE H++
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEID---HIIMSK 58
Query: 260 TEIDRTY--------KGANALK----EGDFETFGKLM-----------------NESHDS 290
+ T K ++ E + LM E D
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 291 LRDD------YEVS-CKELDDIAHCAQSL---PGVLGCRMTGGGFG 326
L +D Y VS + + L VL + G G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSG 162
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET:
ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5
d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Length = 296
Score = 34.9 bits (81), Expect = 0.033
Identities = 14/43 (32%), Positives = 14/43 (32%)
Query: 79 NYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVA 121
N V D G I V GSGL SSAA
Sbjct: 58 NVAGIVAKKMIDDFNIGKGVKITIKKGVKAGSGLGSSAASSAG 100
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure,
ATP binding, CHOL biosynthesis, structural genomics,
PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5
d.58.26.2
Length = 416
Score = 32.9 bits (74), Expect = 0.15
Identities = 33/228 (14%), Positives = 60/228 (26%), Gaps = 42/228 (18%)
Query: 104 SSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPC--GIMDQ 161
++ P +GL+SSAA A + +I L + ++ + S + G
Sbjct: 130 NNFPTAAGLASSAAGFAA---LVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVA 186
Query: 162 YVSVMGEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSV 221
+ E+G D + + L+++ S+
Sbjct: 187 WEMGKAEDGH----DSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQG----------- 231
Query: 222 LDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFG 281
S+ +R HVV R A+ E DF TF
Sbjct: 232 -------------------MQLTVATSELFKERIEHVV--PKRFEVMRKAIVEKDFATFA 270
Query: 282 KLMNESHDSLRDDYEVSCKELDDIA-HCAQSLPGVLGCRMTGGGFGGC 328
K +S S + + + + G
Sbjct: 271 KETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVA 318
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.19
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 28/138 (20%)
Query: 5 LQRLYLLKSLMVKKRLQWIIMMDVRQVVTV-------LLGSRNNSNQIHLHSDSARADKP 57
LQ + LK K R + + +VR+ V++ ++ + RA
Sbjct: 731 LQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRA--- 787
Query: 58 TDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSG------ 111
+I D P+++ ++G++ + +RV V GF V P GS
Sbjct: 788 -NIQLDFPELKPYKQVKQIAPAELEGLLDL--ERVIVVTGFAEV----GPWGSARTRWEM 840
Query: 112 -----LSSSAALEVATYT 124
S +E+A
Sbjct: 841 EAFGEFSLEGCVEMAWIM 858
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 31.8 bits (73), Expect = 0.27
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 84 VVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVA 121
++ + + + V+ +P GL SS+A VA
Sbjct: 58 IIETALNLAPNLTPHHLVMTCDIPPARGLGSSSAAVVA 95
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis,
lipid synthesis, lyase, steroid biosynthesis, sterol
biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Length = 414
Score = 30.6 bits (68), Expect = 0.79
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 56/241 (23%)
Query: 68 QKLTPGAPKWANYVKGVVSIFNDRVAPVPG----------FNAVILSSVPMGSGLSSSAA 117
++ G P+ ++ + + R + G + +++ P +GL+SSAA
Sbjct: 84 REEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVHVASVNNFPTAAGLASSAA 143
Query: 118 LEVATYTFLESITDEKTLKLTDKA-LACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176
L + L++ A A S G G++ A I
Sbjct: 144 GYACLAYTLAQV-YGVEGDLSEVARRGSGSACRSLYG-GFVEWQMGEQADGKDSIARQIA 201
Query: 177 CKTHEARHIPLGDDHQYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLK 236
+ H Q LI+ + + + S ++ + S L K R +
Sbjct: 202 PEWH---------WPQLRILILVVSADKKQTGSTVGMQTSVETSTLLK-FRA-------E 244
Query: 237 SLEDKHAQKLLSDEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLM----NESHDSLR 292
S+ + +++ ++E DF+ F +L N+ H +
Sbjct: 245 SVVPERMKEMTR----------------------CIQEQDFQGFAQLTMKDSNQFHATCL 282
Query: 293 D 293
D
Sbjct: 283 D 283
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate
decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Length = 380
Score = 30.1 bits (67), Expect = 1.1
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 18/164 (10%)
Query: 51 SARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGS 110
R D TD + + + P+ + + + S + + N V ++ P +
Sbjct: 53 ELRDDIETD-TLRLNGTEVDVGKTPRVQSMLLHLRSTCPEELKNKK-VNIVSENNFPTAA 110
Query: 111 GLSSSA----ALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVM 166
G++SSA A+ A +S T+ L AC S G I ++
Sbjct: 111 GMASSASGYCAMSAALIRAFKSTTNVSMLARLGSGSAC----RSAFG-GFVIWNKGEKPD 165
Query: 167 GEEGSALLIDCKTHEARHIPLGDDHQYVFLIINSNVHHELSSSE 210
G + A +TH + Q + ++ S+
Sbjct: 166 GSDCVATQFVDETHW-------PEIQVMCAVLKGAQKDVSSTKG 202
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase,
rhodanese-like family, structural genomics, PSI-2,
protein structure initiative; HET: MSE; 1.80A
{Saccharomyces cerevisiae} PDB: 3fs5_A*
Length = 169
Score = 29.3 bits (65), Expect = 1.3
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 8/114 (7%)
Query: 206 LSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKRGHHVVTEID-R 264
+ SS + + + L S+ ++K L+ + + + +D R
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGMDSYSITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVR 60
Query: 265 TY-------KGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311
K + + + E L + L+ I HC S
Sbjct: 61 GSDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLS 114
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 28.8 bits (63), Expect = 2.9
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 26/177 (14%)
Query: 127 ESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIP 186
S EKTL + E + Q + L++ +
Sbjct: 240 SSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHT 299
Query: 187 LGDDHQYVFLIIN---SNVHHE-------LSSSEYAVRRAQCKSVLDKLHRVSFRDVSL- 235
L + + + ++H +SS + A ++ K+ + + L
Sbjct: 300 LLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLL 359
Query: 236 ------------KSLEDKHAQKL---LSDEEYKRGHHVVTEIDRTYKGANALKEGDF 277
S K A + + H++ RT K A+ G+
Sbjct: 360 FSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNI 416
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, ALF4, transition state analog,
cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Length = 372
Score = 28.2 bits (62), Expect = 4.4
Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 23/184 (12%)
Query: 117 ALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLID 176
++V Y F I D + L+ A +E + +
Sbjct: 163 LIKVVPYEFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEG 222
Query: 177 CKTHEARHIPLGDDHQYVFLIINSNVHH-------ELSSSEYAVRRAQCKSVLDKLHRVS 229
T + D + ++H ++SS + A ++ K+ +
Sbjct: 223 KPTPSHTLLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKV 282
Query: 230 FRDVSL-------------KSLEDKHAQKL---LSDEEYKRGHHVVTEIDRTYKGANALK 273
+ L S K A + + H++ RT K A+
Sbjct: 283 LKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVS 342
Query: 274 EGDF 277
G+
Sbjct: 343 MGNI 346
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component;
mutagenesis, transferase, sugar transport,
phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A
2wwv_A
Length = 103
Score = 25.9 bits (57), Expect = 9.3
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 270 NALKEGDFETFGKLMNESHDSLRDDYEV 297
K+GDF +M++S +L + + V
Sbjct: 27 KQAKQGDFAAAKAMMDQSRMALNEAHLV 54
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 26.8 bits (60), Expect = 9.6
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 153 GVPCGIMDQYVSVMGEEGSALLIDC 177
V G + + ++ +LID
Sbjct: 5 PVTLGPLQENAYLVETGEGPVLIDP 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,278,839
Number of extensions: 318062
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 34
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)