RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9976
(349 letters)
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 147 bits (372), Expect = 5e-44
Identities = 78/142 (54%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 192 QYVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEE 251
+ LI NSNV H L+SSEY VRR QC+ V L + S R+V L+ LE A+ L+S E
Sbjct: 1 KLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEA--ARDLVSKEG 58
Query: 252 YKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQS 311
++R HVV EI RT + A AL+ GD+ FG+LM ESH SLRDDYEVSC ELD + A +
Sbjct: 59 FRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALA 118
Query: 312 LPGVLGCRMTGGGFGGCAIALV 333
+PGV G RMTGGGFGGC + L+
Sbjct: 119 VPGVYGSRMTGGGFGGCTVTLL 140
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 147 bits (372), Expect = 7e-44
Identities = 59/145 (40%), Positives = 81/145 (55%), Gaps = 5/145 (3%)
Query: 193 YVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRV----SFRDVSLKSLEDKHAQKLLS 248
Y +I+N+N L+ S+Y R A+ + L ++ S ++S + D + +
Sbjct: 2 YDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEF-DANTDLIGD 60
Query: 249 DEEYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHC 308
+ KR H V E +RT A G+ FG+L+N SH SL+DDYEV+ ELD +A
Sbjct: 61 ETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAET 120
Query: 309 AQSLPGVLGCRMTGGGFGGCAIALV 333
AQ GVLG RMTG GFGGCAIALV
Sbjct: 121 AQKQAGVLGARMTGAGFGGCAIALV 145
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 132 bits (333), Expect = 3e-38
Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 7/141 (4%)
Query: 193 YVFLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEY 252
L+ + V EL+SSEYA R+ + L L + S ++V+ K L L
Sbjct: 2 VSVLVFYTGVKRELASSEYAERKRIAEESLRILGKESSKEVTEKDLGK------LPPLHR 55
Query: 253 KRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSL 312
K ++V E R + +ALKEGD E GK++ +H L ++Y VSC+ELD A
Sbjct: 56 KFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAME- 114
Query: 313 PGVLGCRMTGGGFGGCAIALV 333
G G R+TG GFGG AIALV
Sbjct: 115 LGAYGARLTGAGFGGSAIALV 135
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 116 bits (291), Expect = 1e-31
Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 4/158 (2%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQK-LTPGAPKWANYVKGVVSIFNDR 91
TVL+GS + L + S AD+P + F +P Q+ L PG P+WANYVKGV+ +
Sbjct: 60 TVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYY--P 117
Query: 92 VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSF 151
AP+PGF+AV++SSVP+G GLSSSA+LEVATYTFL+ + + + +A CQ+AEHSF
Sbjct: 118 AAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCP-DSGTIAARAQVCQQAEHSF 176
Query: 152 AGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPLGD 189
AG+PCGIMDQ++S+MG++G ALLIDC++ E +PL D
Sbjct: 177 AGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSD 214
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 102 bits (255), Expect = 1e-26
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 30 QVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFN 89
+ T L ++ L+S++ K I FD+ +V+K W+NYVKG++ +
Sbjct: 49 TIGTTGLARLREDKKVKLYSENF--PKLGVIEFDLDEVEK--KDGELWSNYVKGMIVMLK 104
Query: 90 DR-VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAE 148
GF +I +P SGLSSSA+LE+ L+ + + + Q+ E
Sbjct: 105 GAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNV-PRLELVQLGQKTE 163
Query: 149 HSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPL 187
+ + GV GI+DQ+ GE A+ +DC T + +P+
Sbjct: 164 NDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPV 202
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 93.4 bits (231), Expect = 2e-23
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 74 APKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEK 133
W +YVKGV+ + + G I +P+G+GLSSSA+ EV L + +
Sbjct: 62 EGSWIDYVKGVLWVLIQEGYKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLN 121
Query: 134 TLKLTDKALACQEAEHSFAGVPCGIMDQYVSVMGEEGSALLIDCKTHEARHIPL 187
+ KAL ++AE+ F GVPCGI+DQ+ V G++ + + +D +T + +IP
Sbjct: 122 -IDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNVIFLDTQTLQYEYIPF 174
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 81.6 bits (201), Expect = 3e-19
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 28/142 (19%)
Query: 195 FLIINSNVHHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLEDKHAQKLLSDEEYKR 254
L+ N+ V + VR K + +
Sbjct: 7 ILLTNTKVPRSTKALVAGVRS----------------------RLIKFPEIM--APLLTS 42
Query: 255 GHHVVTEIDR-TYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLP 313
+ E +R + A A + +LM+ + L V LD + +
Sbjct: 43 IDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLN-ALGVGHASLDQLCQVTAA-- 99
Query: 314 GVLGCRMTGGGFGGCAIALVSP 335
L ++TG G GGC I L+ P
Sbjct: 100 HGLHSKLTGAGGGGCGITLLKP 121
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 68.5 bits (167), Expect = 7e-15
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 251 EYKRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQ 310
+ + + EID+ ALK + E FGKLM ++H+ L+ +S +LD I
Sbjct: 34 KIENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLK-KLNISTPKLDRIVDIGN 90
Query: 311 SLPGVLGCRMTGGGFGGCAIALVSP 335
G ++TG G GGC I LV+
Sbjct: 91 R--FGFGAKLTGAGGGGCVIILVNE 113
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 67.6 bits (164), Expect = 1e-13
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 15/127 (11%)
Query: 55 DKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILSSVPMGSGLSS 114
++ + + + + +P + ++ S +P G+GL S
Sbjct: 86 EQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGS 145
Query: 115 SAALEVATYTFLESITDEKTLKLTDK--------------ALACQEAEHSFAGVPCGIMD 160
SAA V L + +E T L D+ E E G P G +D
Sbjct: 146 SAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSG-VD 204
Query: 161 QYVSVMG 167
VS G
Sbjct: 205 NSVSTWG 211
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 60.3 bits (145), Expect = 2e-11
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 8/137 (5%)
Query: 33 TVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDR- 91
+ + ++I L+ + D + ++ +++ + P Y + D
Sbjct: 37 STIEIKETQEDEIILNLN----DLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYL 92
Query: 92 -VAPVPGFNAVILSSVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHS 150
+ P GF I S +P+ GL SSA++ + T + + K LK + A E
Sbjct: 93 NIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYN-KELKDDEIAKLGYMVEKE 151
Query: 151 FAGVPCGIMDQYVSVMG 167
G I D
Sbjct: 152 IQG-KASITDTSTITYK 167
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 54.3 bits (130), Expect = 7e-10
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 245 KLLSDEEYKRGHHVVTEIDR-TYKGANALKEGDFETFGKLMNESHDSLRD-DYEVSCKEL 302
++ + + +T AL++G E + + + L ++ L
Sbjct: 21 HMVQQIKQNINQNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLL 80
Query: 303 DDIAHCAQSLPGVLGCRMTGGGFGGCAIALVSP 335
+ +Q + +G G G C IAL
Sbjct: 81 RQLKEASQD--LQAVAKSSGAGGGDCGIALSFD 111
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 163
Score = 38.9 bits (90), Expect = 2e-04
Identities = 32/144 (22%), Positives = 44/144 (30%), Gaps = 7/144 (4%)
Query: 45 IHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNAVILS 104
+ D + D I K P P N V D G I
Sbjct: 25 LKEPYDVIEVEAIDDKEIIIEVDDKNIPTDPDK-NVAGIVAKKMIDDFNIGKGVKITIKK 83
Query: 105 SVPMGSGLSSSAALEVATYTFLESITDEKTLKLTDKALACQEAEHSFAGVPCGIMDQY-V 163
V GSGL SSAA T + + L L L + A D
Sbjct: 84 GVKAGSGLGSSAASSAGTAYAINELFK---LNLDKLKLVDYASYGELASSGAKHADNVAP 140
Query: 164 SVMGEEGSALLIDCKTHEARHIPL 187
++ G G ++ + + E HIP+
Sbjct: 141 AIFG--GFTMVTNYEPLEVLHIPI 162
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 190
Score = 32.8 bits (75), Expect = 0.038
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 203 HHELSSSEYAVRRAQCKSVLDKLHRVSFRDVSLKSLED 240
LS + + + VL+K R+S+ L +
Sbjct: 144 SDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPP 181
>d1f15a_ b.121.4.5 (A:) Cucumovirus coat protein {CMV (Cucumber
mosaic virus), strain fny [TaxId: 12305]}
Length = 157
Score = 29.1 bits (65), Expect = 0.50
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 56 KPTDISFDIPKVQKLTPGAPKWANYVKGVVSIFNDRVAPVPGFNA---VILSSVPMGSGL 112
KP I ++L Y K +VS RV P+P F++ V + VP S L
Sbjct: 15 KPPKIDRGSYYGKRLLLPDS-VTEYDKKLVSRLQIRVNPLPKFDSTVWVTVRKVPASSDL 73
Query: 113 SSSA 116
S +A
Sbjct: 74 SVAA 77
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 28.0 bits (62), Expect = 1.1
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 269 ANALKEGDFETFGKLMNESHDSLRDDYEVSCKELDDIAHCAQSLP 313
+ E+ +M + +++ ++ D+A P
Sbjct: 132 IKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
>d1jg5a_ d.205.1.1 (A:) GTP cyclohydrolase I feedback regulatory
protein, GFRP {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 83
Score = 25.9 bits (57), Expect = 2.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 187 LGDDHQYVFLI--INSNVHHELSS--SEYAVRRAQCKSVLDKLHRVSFRDVSL 235
+GD+H L+ + ++ L + EY V VLDKL FR +S+
Sbjct: 18 VGDEHSDPELMQQLGASKRRVLGNNFYEYYVNDPPR-IVLDKLECRGFRVLSM 69
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 26.9 bits (59), Expect = 3.3
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 27 DVRQVVTVLLGSRNNSNQIHLHSDSARADKPTDISFDIPKVQKLTPGAPKWANYVKGVVS 86
D+R + + + + L+ + D + ++ L + + + +
Sbjct: 41 DLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNC----LRDLRQLRKEMESKDASLPT 96
Query: 87 IFNDRVAPVPGFNAVILSSVPMGSGLSSSAALEVA 121
+ ++ V N P +GL+SSAA A
Sbjct: 97 LSQWKLHIVSENN------FPTAAGLASSAAGFAA 125
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 26.3 bits (56), Expect = 6.6
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 253 KRGHHVVTEIDRTYKGANALKEGDFETFGKLMNESHDSLRDDYEVSC 299
+ G+ V K AN K D + G+ + +
Sbjct: 33 EHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate
decarboxylase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 203
Score = 25.5 bits (56), Expect = 8.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 270 NALKEGDFETFGKLMNESHDSL 291
A+ E DF TF K +S
Sbjct: 49 KAIVEKDFATFAKETMMDSNSF 70
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac
{Lactococcus lactis [TaxId: 1358]}
Length = 104
Score = 24.6 bits (54), Expect = 8.7
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 266 YKGANALKEGDFETFGKLMNESHDSLR 292
+ A + GDF L+ E+ +
Sbjct: 25 LEALKAAENGDFAKADSLVVEAGSCIA 51
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 75
Score = 24.2 bits (53), Expect = 9.1
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 152 AGVPCGIMDQYVSVMGEEGSALLI 175
A + ++DQ +S++ EGS +I
Sbjct: 23 ADIGHLVLDQNMSIL--EGSLGVI 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,243,548
Number of extensions: 54983
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 21
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)