Query psy9977
Match_columns 192
No_of_seqs 122 out of 1407
Neff 10.1
Searched_HMMs 46136
Date Sat Aug 17 00:31:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3022|consensus 100.0 1.1E-37 2.4E-42 228.2 16.9 187 2-192 43-229 (300)
2 COG0489 Mrp ATPases involved i 100.0 4.8E-33 1E-37 210.1 19.0 179 4-192 55-237 (265)
3 PRK11670 antiporter inner memb 100.0 8.5E-32 1.8E-36 211.9 18.6 182 3-192 104-287 (369)
4 TIGR01969 minD_arch cell divis 100.0 4.2E-30 9.1E-35 193.9 16.9 167 7-186 1-172 (251)
5 TIGR03029 EpsG chain length de 100.0 1E-29 2.3E-34 194.1 16.6 170 3-183 100-274 (274)
6 cd02037 MRP-like MRP (Multiple 100.0 1.6E-29 3.6E-34 180.0 15.6 138 8-192 1-139 (169)
7 TIGR03018 pepcterm_TyrKin exop 100.0 2E-29 4.4E-34 184.9 16.3 167 3-182 32-207 (207)
8 TIGR01007 eps_fam capsular exo 100.0 1.7E-29 3.7E-34 185.1 15.9 173 4-187 15-193 (204)
9 CHL00175 minD septum-site dete 100.0 1.2E-28 2.5E-33 189.0 18.2 170 3-186 12-190 (281)
10 COG2894 MinD Septum formation 100.0 5.9E-29 1.3E-33 176.9 10.8 169 5-186 1-184 (272)
11 TIGR01968 minD_bact septum sit 100.0 1E-27 2.2E-32 181.9 17.0 167 6-186 1-175 (261)
12 COG0455 flhG Antiactivator of 100.0 1.1E-27 2.3E-32 179.7 15.8 168 5-185 1-177 (262)
13 TIGR03371 cellulose_yhjQ cellu 100.0 7.3E-28 1.6E-32 181.2 14.5 172 6-186 1-180 (246)
14 cd02117 NifH_like This family 100.0 1.5E-27 3.3E-32 175.7 14.7 172 7-186 1-187 (212)
15 PRK11519 tyrosine kinase; Prov 100.0 3.1E-27 6.6E-32 200.7 17.5 172 3-185 523-699 (719)
16 PRK13869 plasmid-partitioning 100.0 1.4E-27 3E-32 190.4 14.6 175 5-186 120-326 (405)
17 PRK10818 cell division inhibit 100.0 5.1E-27 1.1E-31 179.0 17.1 169 5-186 1-185 (270)
18 PRK13236 nitrogenase reductase 99.9 4.8E-27 1E-31 180.8 14.5 174 1-184 1-190 (296)
19 PRK09841 cryptic autophosphory 99.9 8.4E-27 1.8E-31 198.2 16.9 173 3-186 528-705 (726)
20 PRK13185 chlL protochlorophyll 99.9 1.1E-26 2.3E-31 177.2 15.1 170 5-185 1-185 (270)
21 PRK13232 nifH nitrogenase redu 99.9 3.9E-27 8.4E-32 179.8 12.6 171 6-185 1-185 (273)
22 CHL00072 chlL photochlorophyll 99.9 2.3E-26 4.9E-31 176.3 15.6 167 9-185 3-183 (290)
23 TIGR01005 eps_transp_fam exopo 99.9 9.2E-27 2E-31 199.5 14.6 173 3-186 543-720 (754)
24 PF06564 YhjQ: YhjQ protein; 99.9 9E-27 1.9E-31 171.8 12.5 168 6-186 1-175 (243)
25 PRK13705 plasmid-partitioning 99.9 1.6E-26 3.4E-31 183.4 14.1 176 4-186 104-306 (388)
26 PHA02519 plasmid partition pro 99.9 2.7E-26 5.8E-31 181.7 15.1 177 4-187 104-307 (387)
27 cd02032 Bchl_like This family 99.9 5.7E-26 1.2E-30 172.9 16.3 168 8-186 2-184 (267)
28 TIGR03453 partition_RepA plasm 99.9 2.9E-26 6.2E-31 182.7 14.1 176 4-186 102-309 (387)
29 TIGR01281 DPOR_bchL light-inde 99.9 3.5E-26 7.5E-31 174.2 13.8 168 8-186 2-184 (268)
30 TIGR03815 CpaE_hom_Actino heli 99.9 1.5E-25 3.4E-30 174.7 17.4 166 3-185 90-266 (322)
31 COG1192 Soj ATPases involved i 99.9 2.5E-26 5.5E-31 174.2 12.4 173 5-186 1-189 (259)
32 PRK13233 nifH nitrogenase redu 99.9 2.8E-26 6.1E-31 175.3 11.6 173 5-185 1-188 (275)
33 cd02040 NifH NifH gene encodes 99.9 6.5E-26 1.4E-30 172.9 13.4 173 6-185 1-186 (270)
34 PRK10037 cell division protein 99.9 6.1E-26 1.3E-30 171.1 12.9 166 6-185 1-174 (250)
35 cd03110 Fer4_NifH_child This p 99.9 2.7E-25 5.9E-30 159.7 14.6 154 8-186 1-155 (179)
36 PRK13235 nifH nitrogenase redu 99.9 6.5E-26 1.4E-30 173.2 11.8 173 6-184 1-186 (274)
37 PRK13234 nifH nitrogenase redu 99.9 1.2E-25 2.7E-30 172.9 13.2 170 5-185 3-189 (295)
38 PHA02518 ParA-like protein; Pr 99.9 4.2E-25 9.1E-30 162.6 15.1 139 7-185 1-144 (211)
39 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 6.6E-26 1.4E-30 164.8 10.6 158 9-186 1-160 (195)
40 PRK13230 nitrogenase reductase 99.9 3.3E-25 7.1E-30 169.7 13.4 168 6-183 1-184 (279)
41 cd02036 MinD Bacterial cell di 99.9 8.4E-25 1.8E-29 157.0 14.5 127 8-187 1-127 (179)
42 PRK13849 putative crown gall t 99.9 1.4E-24 3E-29 161.2 15.0 145 6-185 1-151 (231)
43 PRK13231 nitrogenase reductase 99.9 2.4E-25 5.2E-30 169.2 10.8 171 6-185 2-179 (264)
44 TIGR01287 nifH nitrogenase iro 99.9 2.2E-24 4.9E-29 164.8 14.5 168 7-184 1-184 (275)
45 cd00550 ArsA_ATPase Oxyanion-t 99.9 1.4E-24 3E-29 163.8 11.3 179 9-188 2-203 (254)
46 cd02035 ArsA ArsA ATPase funct 99.9 1.5E-24 3.3E-29 160.1 10.4 170 9-187 1-183 (217)
47 COG3640 CooC CO dehydrogenase 99.9 3.4E-23 7.3E-28 149.4 14.2 168 8-186 2-197 (255)
48 cd02033 BchX Chlorophyllide re 99.9 8.2E-23 1.8E-27 158.0 17.2 169 4-186 29-219 (329)
49 TIGR02016 BchX chlorophyllide 99.9 2.5E-23 5.5E-28 159.9 14.3 173 7-186 1-194 (296)
50 cd03111 CpaE_like This protein 99.9 6E-23 1.3E-27 135.0 13.3 102 8-183 1-106 (106)
51 COG1149 MinD superfamily P-loo 99.9 6.1E-23 1.3E-27 151.0 14.6 172 6-185 1-225 (284)
52 PF07015 VirC1: VirC1 protein; 99.9 7E-22 1.5E-26 143.9 13.7 146 6-186 1-152 (231)
53 cd02038 FleN-like FleN is a me 99.9 1.4E-21 3E-26 134.7 14.0 108 8-186 1-109 (139)
54 cd02042 ParA ParA and ParB of 99.9 1.5E-21 3.3E-26 128.1 13.0 99 8-182 1-104 (104)
55 PF13614 AAA_31: AAA domain; P 99.9 9.6E-23 2.1E-27 143.4 5.8 142 7-160 1-156 (157)
56 PF02374 ArsA_ATPase: Anion-tr 99.9 5.2E-22 1.1E-26 153.0 10.1 168 9-186 3-248 (305)
57 PF09140 MipZ: ATPase MipZ; I 99.8 7E-22 1.5E-26 144.5 3.6 131 7-157 1-133 (261)
58 COG4963 CpaE Flp pilus assembl 99.8 4.3E-19 9.3E-24 136.7 13.5 170 4-186 102-283 (366)
59 COG0003 ArsA Predicted ATPase 99.8 3.6E-19 7.7E-24 137.0 12.6 179 7-186 2-248 (322)
60 PF00142 Fer4_NifH: 4Fe-4S iro 99.8 4.6E-19 1E-23 130.9 12.4 170 7-185 1-186 (273)
61 COG1348 NifH Nitrogenase subun 99.8 8.9E-19 1.9E-23 126.1 12.6 173 6-186 1-188 (278)
62 KOG2825|consensus 99.8 1.5E-19 3.3E-24 131.4 8.5 184 2-186 14-265 (323)
63 cd03114 ArgK-like The function 99.7 4.1E-16 8.9E-21 108.3 14.7 142 12-185 4-148 (148)
64 TIGR00064 ftsY signal recognit 99.7 2E-15 4.3E-20 114.8 14.2 151 4-187 70-230 (272)
65 PF10609 ParA: ParA/MinD ATPas 99.6 9.9E-16 2.1E-20 93.6 7.5 71 119-192 2-72 (81)
66 TIGR00347 bioD dethiobiotin sy 99.6 1.1E-14 2.4E-19 103.3 12.7 153 11-182 2-166 (166)
67 cd02034 CooC The accessory pro 99.6 5E-15 1.1E-19 98.5 9.1 113 11-151 3-115 (116)
68 PRK10867 signal recognition pa 99.6 2.6E-14 5.7E-19 114.5 14.1 149 6-186 100-252 (433)
69 cd03115 SRP The signal recogni 99.6 5.5E-14 1.2E-18 100.4 14.4 150 9-189 2-154 (173)
70 cd01983 Fer4_NifH The Fer4_Nif 99.6 3.8E-14 8.3E-19 91.3 11.7 92 10-182 2-99 (99)
71 TIGR00959 ffh signal recogniti 99.6 6E-14 1.3E-18 112.4 13.6 150 6-186 98-251 (428)
72 PRK13768 GTPase; Provisional 99.6 4.1E-14 8.8E-19 106.8 11.5 164 6-187 2-175 (253)
73 PRK13886 conjugal transfer pro 99.6 3E-13 6.6E-18 100.2 15.4 47 5-51 1-47 (241)
74 TIGR01425 SRP54_euk signal rec 99.6 1.5E-13 3.2E-18 109.7 14.5 152 5-188 99-253 (429)
75 PRK10416 signal recognition pa 99.6 3.9E-13 8.4E-18 104.3 15.8 151 5-187 113-272 (318)
76 PRK00090 bioD dithiobiotin syn 99.5 5.7E-14 1.2E-18 104.2 7.9 166 9-186 2-174 (222)
77 PRK00771 signal recognition pa 99.5 4.7E-13 1E-17 107.5 12.3 149 5-187 94-245 (437)
78 PRK11889 flhF flagellar biosyn 99.5 1.5E-12 3.1E-17 102.3 13.2 148 5-188 240-391 (436)
79 PRK12726 flagellar biosynthesi 99.5 3.4E-12 7.4E-17 99.9 14.7 148 5-188 205-356 (407)
80 TIGR00345 arsA arsenite-activa 99.5 2.9E-13 6.3E-18 103.8 8.6 155 23-187 1-231 (284)
81 COG0541 Ffh Signal recognition 99.4 2.2E-12 4.9E-17 101.3 11.5 150 5-187 99-252 (451)
82 COG0132 BioD Dethiobiotin synt 99.4 1.1E-11 2.4E-16 90.7 14.1 174 5-186 1-177 (223)
83 PRK14974 cell division protein 99.4 1.6E-11 3.4E-16 95.7 13.4 150 6-187 140-292 (336)
84 KOG0781|consensus 99.4 2.1E-12 4.6E-17 102.1 8.3 162 5-190 377-546 (587)
85 PF00448 SRP54: SRP54-type pro 99.3 1.5E-11 3.3E-16 89.3 11.0 149 6-187 1-153 (196)
86 TIGR00750 lao LAO/AO transport 99.3 2.4E-10 5.1E-15 88.5 16.1 152 4-186 32-184 (300)
87 PRK12374 putative dithiobiotin 99.3 1.5E-10 3.3E-15 86.4 13.8 169 6-186 2-176 (231)
88 COG1703 ArgK Putative periplas 99.3 1.8E-10 4E-15 86.7 13.6 151 4-186 49-201 (323)
89 PRK12727 flagellar biosynthesi 99.3 1.3E-10 2.9E-15 94.6 13.6 144 5-188 349-498 (559)
90 COG0552 FtsY Signal recognitio 99.3 7E-11 1.5E-15 90.3 10.9 148 4-187 137-297 (340)
91 PRK12724 flagellar biosynthesi 99.2 2.2E-10 4.8E-15 91.0 13.4 143 7-188 224-373 (432)
92 PRK14493 putative bifunctional 99.2 3.7E-11 8E-16 91.3 8.2 129 6-163 1-131 (274)
93 PRK05703 flhF flagellar biosyn 99.2 1.8E-10 3.9E-15 92.8 12.5 145 6-188 221-371 (424)
94 PRK09435 membrane ATPase/prote 99.2 1.1E-09 2.4E-14 85.3 16.0 151 4-186 54-206 (332)
95 PRK01077 cobyrinic acid a,c-di 99.2 4E-10 8.7E-15 91.8 13.7 142 6-185 3-155 (451)
96 PRK12723 flagellar biosynthesi 99.2 6.7E-10 1.5E-14 88.2 14.1 146 5-188 173-326 (388)
97 PRK06731 flhF flagellar biosyn 99.2 8.8E-10 1.9E-14 83.6 13.1 148 5-188 74-225 (270)
98 PF03308 ArgK: ArgK protein; 99.2 1.1E-10 2.4E-15 86.6 7.2 150 4-185 27-178 (266)
99 PRK05632 phosphate acetyltrans 99.1 1.5E-09 3.3E-14 92.6 14.5 140 5-185 1-151 (684)
100 KOG0780|consensus 99.1 1E-09 2.2E-14 85.2 11.8 154 4-189 99-255 (483)
101 TIGR00313 cobQ cobyric acid sy 99.1 8.2E-10 1.8E-14 90.4 11.8 170 9-186 1-197 (475)
102 PF13500 AAA_26: AAA domain; P 99.1 3.4E-10 7.4E-15 82.6 8.5 161 7-185 1-169 (199)
103 PRK00784 cobyric acid synthase 99.1 1.7E-09 3.7E-14 89.0 12.8 172 5-185 1-199 (488)
104 cd03109 DTBS Dethiobiotin synt 99.1 7E-09 1.5E-13 70.9 13.1 100 11-186 4-109 (134)
105 PRK14723 flhF flagellar biosyn 99.1 2.6E-09 5.7E-14 90.7 12.4 147 6-188 185-337 (767)
106 COG0529 CysC Adenylylsulfate k 99.0 1E-09 2.2E-14 76.7 4.8 110 4-127 21-131 (197)
107 TIGR03499 FlhF flagellar biosy 99.0 1.8E-09 3.9E-14 82.9 6.6 43 5-48 193-237 (282)
108 KOG1532|consensus 98.8 3.2E-08 6.9E-13 73.9 9.1 165 7-186 19-193 (366)
109 TIGR00379 cobB cobyrinic acid 98.8 1.7E-07 3.8E-12 76.4 14.2 140 9-186 2-152 (449)
110 PRK14722 flhF flagellar biosyn 98.8 9.7E-08 2.1E-12 75.5 12.3 146 6-188 137-295 (374)
111 PRK06278 cobyrinic acid a,c-di 98.8 1.1E-07 2.5E-12 77.4 12.7 144 3-185 235-394 (476)
112 COG1419 FlhF Flagellar GTP-bin 98.8 7.3E-08 1.6E-12 76.0 10.7 142 5-185 202-349 (407)
113 COG1341 Predicted GTPase or GT 98.8 3.1E-07 6.7E-12 72.3 13.8 141 5-158 72-214 (398)
114 PF03029 ATP_bind_1: Conserved 98.7 9.9E-09 2.1E-13 76.8 3.0 154 14-187 3-169 (238)
115 PRK13896 cobyrinic acid a,c-di 98.6 8.5E-07 1.8E-11 71.7 12.7 143 6-186 1-151 (433)
116 PRK06995 flhF flagellar biosyn 98.6 4.1E-07 8.9E-12 74.2 11.0 145 5-188 255-405 (484)
117 COG1797 CobB Cobyrinic acid a, 98.6 1.2E-06 2.7E-11 69.5 11.4 143 7-186 1-153 (451)
118 PRK14494 putative molybdopteri 98.5 8.1E-07 1.8E-11 65.8 7.9 38 6-44 1-38 (229)
119 PF01583 APS_kinase: Adenylyls 98.5 7.4E-08 1.6E-12 67.1 2.2 51 7-58 3-53 (156)
120 KOG0635|consensus 98.4 7.1E-07 1.5E-11 61.0 6.2 111 3-127 28-139 (207)
121 COG1492 CobQ Cobyric acid synt 98.4 6E-07 1.3E-11 72.4 6.0 174 7-185 2-199 (486)
122 PLN02974 adenosylmethionine-8- 98.4 1.9E-06 4.1E-11 74.8 8.5 65 117-185 184-254 (817)
123 PRK13505 formate--tetrahydrofo 98.3 1.2E-06 2.7E-11 71.6 6.3 52 5-59 54-108 (557)
124 COG1763 MobB Molybdopterin-gua 98.3 1.6E-05 3.5E-10 55.6 11.0 41 5-46 1-41 (161)
125 TIGR00176 mobB molybdopterin-g 98.3 9.6E-06 2.1E-10 56.8 9.4 37 9-46 2-38 (155)
126 cd00477 FTHFS Formyltetrahydro 98.3 2.2E-06 4.7E-11 69.5 6.5 52 5-59 37-91 (524)
127 PRK10751 molybdopterin-guanine 98.3 1.4E-05 2.9E-10 56.8 9.7 45 1-46 1-45 (173)
128 cd03112 CobW_like The function 98.2 5.2E-05 1.1E-09 53.3 12.2 144 10-185 3-157 (158)
129 PRK14721 flhF flagellar biosyn 98.2 3.5E-05 7.6E-10 62.1 12.3 145 5-188 190-340 (420)
130 PRK13506 formate--tetrahydrofo 98.2 3.3E-06 7.2E-11 69.1 6.4 52 5-59 53-107 (578)
131 cd04170 EF-G_bact Elongation f 98.2 2.4E-05 5.1E-10 59.8 10.4 66 116-187 62-129 (268)
132 cd01884 EF_Tu EF-Tu subfamily. 98.1 5.2E-05 1.1E-09 55.1 10.9 69 116-187 63-131 (195)
133 PRK14495 putative molybdopteri 98.1 4.4E-05 9.6E-10 61.4 11.0 38 6-44 1-38 (452)
134 KOG1533|consensus 98.1 3.2E-06 6.9E-11 62.0 4.0 100 14-129 9-108 (290)
135 cd03116 MobB Molybdenum is an 98.1 3.6E-05 7.9E-10 54.1 8.9 40 6-46 1-40 (159)
136 cd04167 Snu114p Snu114p subfam 98.1 5.3E-05 1.2E-09 55.8 10.3 66 116-187 69-136 (213)
137 PRK04296 thymidine kinase; Pro 98.1 0.00027 5.7E-09 51.2 13.6 35 8-42 3-37 (190)
138 cd00881 GTP_translation_factor 98.1 6.6E-05 1.4E-09 53.7 10.4 67 117-187 61-127 (189)
139 cd00561 CobA_CobO_BtuR ATP:cor 98.1 5.6E-05 1.2E-09 52.9 9.5 35 8-43 4-38 (159)
140 COG2403 Predicted GTPase [Gene 98.1 7.5E-05 1.6E-09 58.4 10.8 41 3-43 123-163 (449)
141 PF00009 GTP_EFTU: Elongation 98.0 7.4E-05 1.6E-09 53.9 9.7 67 116-186 68-134 (188)
142 cd04168 TetM_like Tet(M)-like 98.0 0.00028 6.1E-09 52.9 13.0 68 116-187 62-129 (237)
143 cd04169 RF3 RF3 subfamily. Pe 98.0 6.6E-05 1.4E-09 57.3 9.6 65 116-186 69-135 (267)
144 PF03205 MobB: Molybdopterin g 98.0 2.3E-05 5E-10 53.9 6.5 41 7-48 1-42 (140)
145 cd01124 KaiC KaiC is a circadi 98.0 1.5E-05 3.2E-10 57.3 5.7 39 10-48 2-40 (187)
146 PRK00089 era GTPase Era; Revie 98.0 0.00031 6.7E-09 54.3 13.4 69 116-187 51-126 (292)
147 cd01886 EF-G Elongation factor 98.0 0.00024 5.1E-09 54.4 12.3 68 116-187 62-129 (270)
148 cd04163 Era Era subfamily. Er 98.0 0.00039 8.5E-09 48.3 12.4 22 6-28 3-24 (168)
149 cd03113 CTGs CTP synthetase (C 98.0 0.00027 5.7E-09 52.5 11.6 177 9-185 3-213 (255)
150 PHA02542 41 41 helicase; Provi 98.0 3E-06 6.5E-11 69.5 1.5 45 7-51 190-234 (473)
151 TIGR00708 cobA cob(I)alamin ad 97.9 0.00013 2.8E-09 51.8 9.2 36 8-44 7-42 (173)
152 PRK08233 hypothetical protein; 97.9 0.00012 2.6E-09 52.3 9.2 38 6-46 3-40 (182)
153 COG1159 Era GTPase [General fu 97.9 0.00016 3.6E-09 55.0 9.7 114 7-187 7-127 (298)
154 PRK00889 adenylylsulfate kinas 97.9 3.4E-05 7.3E-10 55.1 5.8 44 4-48 2-45 (175)
155 cd04165 GTPBP1_like GTPBP1-lik 97.9 0.00027 5.8E-09 52.6 10.7 69 116-186 82-150 (224)
156 KOG2749|consensus 97.9 0.00013 2.8E-09 56.8 8.8 47 4-51 101-147 (415)
157 PLN03127 Elongation factor Tu; 97.8 0.00057 1.2E-08 56.0 12.6 69 116-187 122-190 (447)
158 PRK07667 uridine kinase; Provi 97.8 5E-05 1.1E-09 55.2 5.8 39 8-46 18-56 (193)
159 cd01894 EngA1 EngA1 subfamily. 97.8 0.0002 4.4E-09 49.5 8.7 68 116-186 43-117 (157)
160 TIGR00503 prfC peptide chain r 97.8 0.00041 9E-09 57.9 11.8 65 116-186 78-144 (527)
161 TIGR00073 hypB hydrogenase acc 97.8 0.00041 8.8E-09 50.9 10.3 41 4-46 20-60 (207)
162 CHL00071 tufA elongation facto 97.8 0.00082 1.8E-08 54.5 12.8 68 116-186 73-140 (409)
163 PRK00049 elongation factor Tu; 97.8 0.0005 1.1E-08 55.5 11.4 68 116-186 73-140 (396)
164 COG1160 Predicted GTPases [Gen 97.8 0.00039 8.4E-09 55.9 10.5 68 116-186 49-124 (444)
165 PRK00093 GTP-binding protein D 97.8 0.00024 5.3E-09 58.0 9.7 67 117-186 48-121 (435)
166 PRK15453 phosphoribulokinase; 97.8 6.1E-05 1.3E-09 57.4 5.6 44 3-47 2-45 (290)
167 PRK00741 prfC peptide chain re 97.8 0.00051 1.1E-08 57.4 11.4 66 116-187 77-144 (526)
168 KOG0744|consensus 97.8 0.00014 2.9E-09 56.2 7.3 159 7-174 178-348 (423)
169 KOG1534|consensus 97.8 6E-05 1.3E-09 54.6 5.0 108 7-130 3-110 (273)
170 PRK12740 elongation factor G; 97.7 0.00021 4.6E-09 61.5 9.1 66 116-187 58-125 (668)
171 PRK05480 uridine/cytidine kina 97.7 9.8E-05 2.1E-09 54.2 6.1 43 1-46 1-43 (209)
172 smart00382 AAA ATPases associa 97.7 0.00021 4.6E-09 48.1 7.4 40 7-47 3-42 (148)
173 TIGR00436 era GTP-binding prot 97.7 0.0014 3.1E-08 50.1 12.7 67 117-187 47-120 (270)
174 PRK12736 elongation factor Tu; 97.7 0.00072 1.6E-08 54.6 11.5 69 116-187 73-141 (394)
175 cd01394 radB RadB. The archaea 97.7 8.4E-05 1.8E-09 54.9 5.6 39 8-46 20-58 (218)
176 PRK10218 GTP-binding protein; 97.7 0.0013 2.7E-08 55.9 13.0 68 116-187 66-133 (607)
177 PRK05986 cob(I)alamin adenolsy 97.7 0.00062 1.3E-08 49.1 9.6 36 8-44 24-59 (191)
178 PRK06696 uridine kinase; Valid 97.7 0.0001 2.3E-09 54.7 5.7 42 6-47 21-62 (223)
179 cd01885 EF2 EF2 (for archaea a 97.7 0.0014 3.1E-08 48.7 11.4 66 116-187 71-138 (222)
180 PRK03846 adenylylsulfate kinas 97.7 0.00012 2.5E-09 53.4 5.6 43 5-48 23-65 (198)
181 PF02492 cobW: CobW/HypB/UreG, 97.7 0.00033 7.2E-09 50.1 7.8 143 10-186 3-153 (178)
182 cd01125 repA Hexameric Replica 97.6 0.00011 2.4E-09 55.1 5.5 41 8-48 2-54 (239)
183 TIGR00682 lpxK tetraacyldisacc 97.6 0.0011 2.3E-08 51.7 11.0 43 5-47 27-70 (311)
184 PRK14489 putative bifunctional 97.6 0.00082 1.8E-08 53.7 10.6 41 5-46 204-244 (366)
185 TIGR00490 aEF-2 translation el 97.6 0.00018 3.9E-09 62.4 7.1 66 116-187 84-151 (720)
186 cd01891 TypA_BipA TypA (tyrosi 97.6 0.00063 1.4E-08 49.3 8.9 67 116-186 63-129 (194)
187 PRK09361 radB DNA repair and r 97.6 0.00017 3.6E-09 53.6 5.7 37 8-44 24-60 (225)
188 COG0857 Pta BioD-like N-termin 97.6 0.0014 3E-08 51.8 10.9 38 5-42 1-38 (354)
189 PRK05973 replicative DNA helic 97.6 0.00017 3.6E-09 53.9 5.5 40 8-47 65-104 (237)
190 PRK00652 lpxK tetraacyldisacch 97.6 0.001 2.3E-08 52.1 10.1 42 6-47 49-91 (325)
191 COG0050 TufB GTPases - transla 97.6 0.00027 5.8E-09 53.9 6.4 70 116-188 73-142 (394)
192 COG1066 Sms Predicted ATP-depe 97.6 0.00011 2.3E-09 58.4 4.5 38 8-46 94-131 (456)
193 PRK07952 DNA replication prote 97.6 0.00013 2.9E-09 54.8 4.9 35 9-43 101-135 (244)
194 TIGR01394 TypA_BipA GTP-bindin 97.6 0.0007 1.5E-08 57.4 9.5 67 116-186 62-128 (594)
195 PRK15494 era GTPase Era; Provi 97.6 0.0015 3.2E-08 51.7 10.8 67 117-186 99-172 (339)
196 PRK08533 flagellar accessory p 97.5 0.00036 7.8E-09 52.1 7.0 39 9-47 26-64 (230)
197 PRK06067 flagellar accessory p 97.5 0.00035 7.7E-09 52.2 6.9 39 7-46 26-64 (234)
198 PRK10463 hydrogenase nickel in 97.5 0.00068 1.5E-08 52.1 8.3 42 4-47 102-143 (290)
199 PRK14491 putative bifunctional 97.5 0.001 2.2E-08 56.4 9.9 38 6-44 10-47 (597)
200 TIGR00485 EF-Tu translation el 97.5 0.0018 3.9E-08 52.3 10.9 69 116-187 73-141 (394)
201 cd02028 UMPK_like Uridine mono 97.5 0.00017 3.6E-09 51.8 4.5 37 11-47 3-39 (179)
202 TIGR01618 phage_P_loop phage n 97.5 0.00066 1.4E-08 50.2 7.6 33 6-46 12-44 (220)
203 PF13479 AAA_24: AAA domain 97.5 0.00087 1.9E-08 49.4 8.2 33 6-47 3-35 (213)
204 cd04171 SelB SelB subfamily. 97.5 0.0012 2.5E-08 46.0 8.5 20 8-28 2-21 (164)
205 PLN00043 elongation factor 1-a 97.5 0.0012 2.5E-08 54.2 9.5 68 116-186 83-157 (447)
206 cd04166 CysN_ATPS CysN_ATPS su 97.5 0.0021 4.6E-08 47.2 10.0 69 116-187 75-143 (208)
207 PRK11537 putative GTP-binding 97.5 0.0035 7.6E-08 49.1 11.7 148 6-186 4-162 (318)
208 cd00880 Era_like Era (E. coli 97.5 0.0018 4E-08 44.3 9.3 69 117-186 44-116 (163)
209 cd02027 APSK Adenosine 5'-phos 97.5 0.00019 4.2E-09 49.8 4.2 38 10-47 2-39 (149)
210 cd00154 Rab Rab family. Rab G 97.4 0.0031 6.7E-08 43.3 10.4 68 116-187 47-118 (159)
211 PTZ00141 elongation factor 1- 97.4 0.0017 3.8E-08 53.2 10.2 68 116-186 83-157 (446)
212 cd02029 PRK_like Phosphoribulo 97.4 0.00024 5.3E-09 53.8 4.8 40 8-48 1-40 (277)
213 COG0523 Putative GTPases (G3E 97.4 0.0054 1.2E-07 48.1 12.4 146 12-188 6-159 (323)
214 cd01120 RecA-like_NTPases RecA 97.4 0.00028 6.2E-09 49.1 5.0 38 10-47 2-39 (165)
215 cd01890 LepA LepA subfamily. 97.4 0.0028 6.1E-08 44.9 10.1 66 116-186 65-131 (179)
216 TIGR02237 recomb_radB DNA repa 97.4 0.00039 8.5E-09 51.0 5.7 38 8-45 13-50 (209)
217 PRK12735 elongation factor Tu; 97.4 0.0034 7.5E-08 50.7 11.5 67 117-186 74-140 (396)
218 PRK00007 elongation factor G; 97.4 0.0026 5.7E-08 55.0 11.4 68 116-187 73-140 (693)
219 TIGR02655 circ_KaiC circadian 97.4 0.00051 1.1E-08 56.9 6.8 41 8-48 264-304 (484)
220 PLN03126 Elongation factor Tu; 97.4 0.003 6.6E-08 52.2 11.2 69 116-187 142-210 (478)
221 PF01121 CoaE: Dephospho-CoA k 97.4 2.2E-05 4.7E-10 56.3 -1.2 37 119-163 105-141 (180)
222 smart00175 RAB Rab subfamily o 97.4 0.0043 9.2E-08 43.2 10.5 66 117-186 48-117 (164)
223 PF07755 DUF1611: Protein of u 97.4 0.006 1.3E-07 47.1 11.8 144 5-186 111-269 (301)
224 COG3367 Uncharacterized conser 97.4 0.0065 1.4E-07 46.9 11.7 145 5-186 147-300 (339)
225 smart00053 DYNc Dynamin, GTPas 97.4 0.019 4E-07 43.2 14.0 72 117-189 124-207 (240)
226 PF13481 AAA_25: AAA domain; P 97.4 0.00034 7.4E-09 50.5 4.7 40 8-47 33-82 (193)
227 PF06418 CTP_synth_N: CTP synt 97.3 0.0015 3.2E-08 49.1 7.9 175 6-180 1-209 (276)
228 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00029 6.3E-09 53.2 4.3 37 10-46 2-38 (249)
229 cd01889 SelB_euk SelB subfamil 97.3 0.0034 7.3E-08 45.3 9.6 68 116-187 66-133 (192)
230 PRK06762 hypothetical protein; 97.3 0.00036 7.7E-09 49.3 4.3 38 7-47 2-39 (166)
231 PRK12739 elongation factor G; 97.3 0.0064 1.4E-07 52.7 12.6 68 116-187 71-138 (691)
232 PRK03003 GTP-binding protein D 97.3 0.0043 9.3E-08 51.3 11.0 69 117-186 85-158 (472)
233 cd04124 RabL2 RabL2 subfamily. 97.3 0.0058 1.3E-07 42.7 10.3 67 116-186 47-116 (161)
234 cd01883 EF1_alpha Eukaryotic e 97.3 0.00089 1.9E-08 49.6 6.4 69 116-187 75-150 (219)
235 PF13207 AAA_17: AAA domain; P 97.3 0.00043 9.4E-09 46.0 4.3 30 10-44 2-31 (121)
236 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0016 3.4E-08 48.9 7.6 40 8-47 22-61 (237)
237 PRK00081 coaE dephospho-CoA ki 97.3 9.9E-05 2.1E-09 53.6 1.1 34 6-46 2-35 (194)
238 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.00055 1.2E-08 52.1 5.2 39 7-45 36-74 (259)
239 TIGR03575 selen_PSTK_euk L-ser 97.3 0.00038 8.3E-09 54.7 4.4 39 10-48 2-41 (340)
240 PF06745 KaiC: KaiC; InterPro 97.3 0.00045 9.7E-09 51.3 4.5 39 9-47 21-60 (226)
241 cd01864 Rab19 Rab19 subfamily. 97.2 0.0079 1.7E-07 42.1 10.6 66 117-186 51-120 (165)
242 TIGR00484 EF-G translation elo 97.2 0.0033 7.2E-08 54.4 10.2 68 116-187 73-140 (689)
243 TIGR03594 GTPase_EngA ribosome 97.2 0.0024 5.2E-08 52.0 9.0 67 117-186 46-119 (429)
244 PRK05541 adenylylsulfate kinas 97.2 0.00076 1.7E-08 48.1 5.3 41 5-46 6-46 (176)
245 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0077 1.7E-07 46.0 11.0 35 8-42 81-115 (264)
246 PRK00093 GTP-binding protein D 97.2 0.0082 1.8E-07 49.1 11.9 42 144-186 255-296 (435)
247 COG4240 Predicted kinase [Gene 97.2 0.00066 1.4E-08 50.0 4.8 41 5-45 48-89 (300)
248 PF01695 IstB_IS21: IstB-like 97.2 0.00051 1.1E-08 49.2 4.2 37 7-44 48-84 (178)
249 cd01122 GP4d_helicase GP4d_hel 97.2 0.00074 1.6E-08 51.5 5.3 39 8-46 31-70 (271)
250 PRK05433 GTP-binding protein L 97.2 0.0029 6.2E-08 53.8 9.1 66 116-187 72-139 (600)
251 cd01882 BMS1 Bms1. Bms1 is an 97.2 0.013 2.7E-07 43.7 11.6 26 4-30 37-62 (225)
252 TIGR00101 ureG urease accessor 97.2 0.0072 1.6E-07 44.1 10.1 38 7-46 2-39 (199)
253 PRK04328 hypothetical protein; 97.2 0.0019 4.1E-08 48.8 7.2 40 8-47 24-63 (249)
254 KOG3220|consensus 97.2 0.0003 6.6E-09 50.6 2.6 54 101-163 91-144 (225)
255 cd04148 RGK RGK subfamily. Th 97.2 0.0087 1.9E-07 44.4 10.5 65 117-186 49-118 (221)
256 COG0467 RAD55 RecA-superfamily 97.2 0.0019 4.2E-08 49.0 7.2 43 8-50 24-66 (260)
257 cd00984 DnaB_C DnaB helicase C 97.2 0.00088 1.9E-08 50.2 5.2 40 8-47 14-54 (242)
258 COG1618 Predicted nucleotide k 97.2 0.0011 2.3E-08 46.3 5.0 36 4-40 3-38 (179)
259 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.1 0.013 2.9E-07 40.9 10.9 66 117-186 50-119 (166)
260 PF03796 DnaB_C: DnaB-like hel 97.1 0.00099 2.1E-08 50.6 5.4 40 8-47 20-60 (259)
261 cd04115 Rab33B_Rab33A Rab33B/R 97.1 0.012 2.6E-07 41.4 10.7 68 116-186 49-121 (170)
262 PTZ00451 dephospho-CoA kinase; 97.1 0.00017 3.7E-09 54.2 1.2 36 6-47 1-36 (244)
263 TIGR00455 apsK adenylylsulfate 97.1 0.0011 2.4E-08 47.6 5.3 40 8-47 19-58 (184)
264 COG1484 DnaC DNA replication p 97.1 0.00089 1.9E-08 50.7 5.0 36 8-44 107-142 (254)
265 PTZ00416 elongation factor 2; 97.1 0.0054 1.2E-07 54.2 10.3 68 116-187 90-157 (836)
266 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.00093 2E-08 49.8 5.0 39 8-46 20-64 (235)
267 cd04101 RabL4 RabL4 (Rab-like4 97.1 0.015 3.2E-07 40.5 10.9 67 116-186 50-119 (164)
268 cd01866 Rab2 Rab2 subfamily. 97.1 0.013 2.9E-07 41.2 10.6 65 118-186 53-121 (168)
269 COG3598 RepA RecA-family ATPas 97.1 0.00082 1.8E-08 51.9 4.5 44 9-52 91-144 (402)
270 cd01860 Rab5_related Rab5-rela 97.1 0.014 3.1E-07 40.5 10.7 66 117-186 49-118 (163)
271 PRK07414 cob(I)yrinic acid a,c 97.1 0.0064 1.4E-07 43.3 8.6 36 8-44 23-58 (178)
272 PRK13351 elongation factor G; 97.1 0.012 2.7E-07 51.0 12.1 66 116-187 71-138 (687)
273 CHL00189 infB translation init 97.1 0.0056 1.2E-07 53.1 9.8 67 116-186 293-359 (742)
274 cd01868 Rab11_like Rab11-like. 97.1 0.016 3.4E-07 40.5 10.7 66 117-186 51-120 (165)
275 PHA00729 NTP-binding motif con 97.1 0.0012 2.6E-08 48.9 5.0 37 7-44 18-67 (226)
276 PRK12317 elongation factor 1-a 97.1 0.0034 7.3E-08 51.2 8.0 69 116-187 82-152 (425)
277 cd02019 NK Nucleoside/nucleoti 97.0 0.0015 3.2E-08 39.1 4.4 30 12-43 4-33 (69)
278 PF13245 AAA_19: Part of AAA d 97.0 0.0019 4.1E-08 39.5 4.8 37 8-44 11-51 (76)
279 PF02606 LpxK: Tetraacyldisacc 97.0 0.0059 1.3E-07 48.0 8.7 42 6-47 35-77 (326)
280 PF13173 AAA_14: AAA domain 97.0 0.0012 2.5E-08 44.6 4.2 40 6-47 2-41 (128)
281 PLN02422 dephospho-CoA kinase 97.0 0.00021 4.5E-09 53.2 0.6 34 6-46 1-34 (232)
282 PRK05306 infB translation init 97.0 0.011 2.4E-07 51.6 11.1 66 117-186 336-401 (787)
283 cd01878 HflX HflX subfamily. 97.0 0.013 2.9E-07 42.6 10.1 67 117-186 88-165 (204)
284 cd04110 Rab35 Rab35 subfamily. 97.0 0.02 4.4E-07 41.6 11.0 66 117-186 54-122 (199)
285 cd01867 Rab8_Rab10_Rab13_like 97.0 0.021 4.5E-07 40.1 10.8 66 117-186 51-120 (167)
286 cd04113 Rab4 Rab4 subfamily. 97.0 0.018 3.8E-07 40.0 10.4 67 116-186 47-117 (161)
287 cd04160 Arfrp1 Arfrp1 subfamil 97.0 0.033 7.1E-07 38.9 11.8 67 116-186 48-119 (167)
288 cd01861 Rab6 Rab6 subfamily. 97.0 0.022 4.7E-07 39.5 10.8 66 117-186 48-117 (161)
289 cd04125 RabA_like RabA-like su 97.0 0.022 4.8E-07 40.9 10.9 66 117-186 48-117 (188)
290 TIGR00235 udk uridine kinase. 97.0 0.0015 3.2E-08 48.0 4.8 43 1-46 1-43 (207)
291 KOG0460|consensus 97.0 0.0029 6.3E-08 49.3 6.3 121 17-188 64-184 (449)
292 PRK14733 coaE dephospho-CoA ki 97.0 0.00062 1.3E-08 49.8 2.6 38 5-48 5-42 (204)
293 TIGR03594 GTPase_EngA ribosome 97.0 0.026 5.7E-07 46.0 12.4 43 144-187 254-296 (429)
294 cd04137 RheB Rheb (Ras Homolog 96.9 0.014 3E-07 41.5 9.6 66 117-186 48-118 (180)
295 PRK12377 putative replication 96.9 0.0016 3.4E-08 49.2 4.8 35 10-44 104-138 (248)
296 TIGR01393 lepA GTP-binding pro 96.9 0.01 2.2E-07 50.6 10.1 67 116-186 68-134 (595)
297 PRK14730 coaE dephospho-CoA ki 96.9 0.00046 1E-08 50.2 1.9 34 7-46 2-35 (195)
298 TIGR03600 phage_DnaB phage rep 96.9 0.0017 3.7E-08 52.9 5.4 40 8-47 195-235 (421)
299 cd02022 DPCK Dephospho-coenzym 96.9 0.00042 9E-09 49.7 1.6 32 9-47 2-33 (179)
300 COG0504 PyrG CTP synthase (UTP 96.9 0.015 3.3E-07 47.4 10.4 174 7-180 2-208 (533)
301 TIGR02012 tigrfam_recA protein 96.9 0.0019 4E-08 50.5 5.2 40 6-46 55-94 (321)
302 COG0237 CoaE Dephospho-CoA kin 96.9 0.0017 3.7E-08 47.4 4.6 35 5-46 1-35 (201)
303 PF02421 FeoB_N: Ferrous iron 96.9 0.0055 1.2E-07 42.9 6.8 68 116-186 45-117 (156)
304 COG0480 FusA Translation elong 96.9 0.0052 1.1E-07 52.9 8.0 65 117-187 75-141 (697)
305 PF08477 Miro: Miro-like prote 96.9 0.0076 1.6E-07 39.7 7.3 60 120-185 52-119 (119)
306 cd04139 RalA_RalB RalA/RalB su 96.9 0.019 4.2E-07 39.8 9.7 66 117-186 47-117 (164)
307 cd01887 IF2_eIF5B IF2/eIF5B (i 96.9 0.0057 1.2E-07 42.8 7.0 68 116-187 48-115 (168)
308 PRK09302 circadian clock prote 96.9 0.0029 6.4E-08 52.8 6.4 42 8-49 32-74 (509)
309 PF00485 PRK: Phosphoribulokin 96.9 0.0017 3.8E-08 47.1 4.5 36 9-45 2-41 (194)
310 PRK05439 pantothenate kinase; 96.9 0.0028 6E-08 49.4 5.7 41 5-46 85-127 (311)
311 TIGR00337 PyrG CTP synthase. C 96.9 0.023 5E-07 47.2 11.3 174 7-180 2-209 (525)
312 PRK06526 transposase; Provisio 96.9 0.00072 1.6E-08 51.2 2.5 35 8-43 100-134 (254)
313 cd04112 Rab26 Rab26 subfamily. 96.9 0.013 2.8E-07 42.2 8.9 66 117-186 49-118 (191)
314 cd04114 Rab30 Rab30 subfamily. 96.9 0.025 5.5E-07 39.5 10.3 65 118-186 56-124 (169)
315 PRK14734 coaE dephospho-CoA ki 96.9 0.00065 1.4E-08 49.6 2.1 33 6-45 1-33 (200)
316 cd00983 recA RecA is a bacter 96.9 0.0023 5E-08 50.1 5.2 39 7-46 56-94 (325)
317 PRK06217 hypothetical protein; 96.8 0.0019 4.1E-08 46.4 4.5 33 7-45 2-34 (183)
318 cd02025 PanK Pantothenate kina 96.8 0.0022 4.7E-08 47.6 4.7 37 9-46 2-40 (220)
319 PRK06835 DNA replication prote 96.8 0.002 4.2E-08 50.7 4.6 37 7-44 184-220 (329)
320 PRK07560 elongation factor EF- 96.8 0.0082 1.8E-07 52.4 8.8 66 116-187 85-152 (731)
321 PRK05642 DNA replication initi 96.8 0.002 4.4E-08 48.2 4.4 37 9-45 47-83 (234)
322 TIGR02538 type_IV_pilB type IV 96.8 0.011 2.3E-07 50.1 9.2 139 8-192 317-460 (564)
323 TIGR02238 recomb_DMC1 meiotic 96.8 0.0038 8.2E-08 48.8 6.1 40 7-46 96-141 (313)
324 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0025 5.5E-08 47.2 4.9 40 6-46 38-77 (226)
325 PF10662 PduV-EutP: Ethanolami 96.8 0.063 1.4E-06 36.9 11.3 74 105-184 53-129 (143)
326 PRK05595 replicative DNA helic 96.8 0.0026 5.7E-08 52.2 5.3 41 7-47 201-242 (444)
327 PLN02327 CTP synthase 96.8 0.029 6.2E-07 46.9 11.1 40 7-46 2-42 (557)
328 PRK08727 hypothetical protein; 96.8 0.0023 4.9E-08 47.9 4.5 36 10-45 44-79 (233)
329 TIGR02475 CobW cobalamin biosy 96.8 0.051 1.1E-06 43.1 12.2 40 7-49 5-44 (341)
330 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.8 0.083 1.8E-06 37.4 12.4 66 117-186 58-128 (174)
331 PRK12298 obgE GTPase CgtA; Rev 96.8 0.044 9.6E-07 44.2 12.0 20 8-28 161-180 (390)
332 cd01672 TMPK Thymidine monopho 96.8 0.0031 6.8E-08 45.5 5.1 35 8-43 2-36 (200)
333 PRK08506 replicative DNA helic 96.8 0.0029 6.3E-08 52.3 5.4 41 8-48 193-233 (472)
334 PRK11823 DNA repair protein Ra 96.8 0.0033 7.2E-08 51.6 5.6 39 8-46 81-119 (446)
335 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0039 8.5E-08 46.3 5.6 39 7-46 21-59 (229)
336 cd01863 Rab18 Rab18 subfamily. 96.8 0.039 8.4E-07 38.3 10.4 66 117-186 48-118 (161)
337 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.0043 9.3E-08 46.0 5.8 39 7-46 17-55 (224)
338 cd01121 Sms Sms (bacterial rad 96.7 0.003 6.6E-08 50.5 5.2 39 8-46 83-121 (372)
339 TIGR00416 sms DNA repair prote 96.7 0.0029 6.3E-08 52.0 5.2 39 8-46 95-133 (454)
340 PLN00116 translation elongatio 96.7 0.011 2.3E-07 52.5 8.9 67 117-187 97-163 (843)
341 COG0468 RecA RecA/RadA recombi 96.7 0.0091 2E-07 45.8 7.5 38 7-45 61-98 (279)
342 COG2874 FlaH Predicted ATPases 96.7 0.0085 1.8E-07 43.8 6.8 147 8-169 29-182 (235)
343 PRK05380 pyrG CTP synthetase; 96.7 0.033 7.1E-07 46.4 11.0 176 6-183 2-210 (533)
344 TIGR00483 EF-1_alpha translati 96.7 0.012 2.5E-07 48.1 8.5 69 116-187 83-154 (426)
345 PTZ00133 ADP-ribosylation fact 96.7 0.096 2.1E-06 37.5 12.3 67 116-186 59-130 (182)
346 PRK09554 feoB ferrous iron tra 96.7 0.043 9.4E-07 48.2 12.2 68 116-186 48-124 (772)
347 KOG4238|consensus 96.7 0.00089 1.9E-08 52.4 1.8 80 8-88 52-132 (627)
348 cd02023 UMPK Uridine monophosp 96.7 0.0029 6.4E-08 45.9 4.5 36 9-47 2-37 (198)
349 PRK06749 replicative DNA helic 96.7 0.0033 7.2E-08 51.3 5.1 40 8-47 187-226 (428)
350 smart00177 ARF ARF-like small 96.7 0.11 2.4E-06 36.8 12.5 67 116-186 55-126 (175)
351 COG4088 Predicted nucleotide k 96.7 0.0019 4.2E-08 46.9 3.2 38 10-47 4-41 (261)
352 cd04154 Arl2 Arl2 subfamily. 96.7 0.068 1.5E-06 37.7 11.3 66 117-186 57-127 (173)
353 cd04116 Rab9 Rab9 subfamily. 96.7 0.051 1.1E-06 38.1 10.6 66 117-186 53-126 (170)
354 PRK09518 bifunctional cytidyla 96.7 0.048 1E-06 47.6 12.3 68 116-186 321-395 (712)
355 PRK08903 DnaA regulatory inact 96.7 0.0035 7.6E-08 46.6 4.8 38 9-46 44-81 (227)
356 PRK09183 transposase/IS protei 96.7 0.0034 7.4E-08 47.8 4.7 36 7-43 103-138 (259)
357 PRK10512 selenocysteinyl-tRNA- 96.6 0.01 2.2E-07 50.7 7.9 66 119-187 52-117 (614)
358 cd04109 Rab28 Rab28 subfamily. 96.6 0.049 1.1E-06 40.1 10.8 67 117-186 49-121 (215)
359 PF01935 DUF87: Domain of unkn 96.6 0.0038 8.3E-08 46.4 4.9 40 6-46 23-63 (229)
360 TIGR00475 selB selenocysteine- 96.6 0.0086 1.9E-07 50.8 7.4 68 117-187 49-116 (581)
361 PRK08118 topology modulation p 96.6 0.0023 5.1E-08 45.3 3.5 25 6-31 1-25 (167)
362 TIGR03156 GTP_HflX GTP-binding 96.6 0.11 2.5E-06 41.3 13.3 67 117-186 236-313 (351)
363 cd04108 Rab36_Rab34 Rab34/Rab3 96.6 0.052 1.1E-06 38.3 10.3 67 117-186 48-118 (170)
364 PRK08939 primosomal protein Dn 96.6 0.0037 8.1E-08 48.7 4.8 37 7-44 157-193 (306)
365 PRK06893 DNA replication initi 96.6 0.0037 8.1E-08 46.6 4.6 35 10-44 42-76 (229)
366 TIGR00041 DTMP_kinase thymidyl 96.6 0.0056 1.2E-07 44.3 5.4 37 6-43 3-39 (195)
367 cd04120 Rab12 Rab12 subfamily. 96.6 0.06 1.3E-06 39.4 10.8 66 117-186 48-117 (202)
368 PLN02924 thymidylate kinase 96.6 0.0053 1.1E-07 45.5 5.3 38 4-42 14-51 (220)
369 PF02572 CobA_CobO_BtuR: ATP:c 96.6 0.014 3E-07 41.5 7.1 35 9-44 6-40 (172)
370 PRK09354 recA recombinase A; P 96.6 0.0049 1.1E-07 48.7 5.3 39 7-46 61-99 (349)
371 PRK08760 replicative DNA helic 96.6 0.0041 8.9E-08 51.4 5.0 41 8-48 230-271 (476)
372 PRK09302 circadian clock prote 96.6 0.0062 1.4E-07 50.9 6.1 39 7-46 274-312 (509)
373 PRK08116 hypothetical protein; 96.6 0.0046 1E-07 47.3 4.9 35 10-44 117-151 (268)
374 cd04107 Rab32_Rab38 Rab38/Rab3 96.6 0.081 1.8E-06 38.4 11.4 67 116-186 48-122 (201)
375 cd04121 Rab40 Rab40 subfamily. 96.6 0.071 1.5E-06 38.5 10.9 66 117-186 54-122 (189)
376 PRK08006 replicative DNA helic 96.6 0.005 1.1E-07 50.9 5.4 42 7-48 224-266 (471)
377 smart00173 RAS Ras subfamily o 96.5 0.068 1.5E-06 37.1 10.5 66 117-186 47-117 (164)
378 PRK14732 coaE dephospho-CoA ki 96.5 0.00079 1.7E-08 49.0 0.6 32 9-47 2-33 (196)
379 cd01862 Rab7 Rab7 subfamily. 96.5 0.053 1.1E-06 37.9 9.9 66 118-187 49-122 (172)
380 PLN03046 D-glycerate 3-kinase; 96.5 0.0061 1.3E-07 49.2 5.4 40 7-46 212-251 (460)
381 PF00154 RecA: recA bacterial 96.5 0.016 3.5E-07 45.3 7.6 40 6-46 53-92 (322)
382 PRK08181 transposase; Validate 96.5 0.0039 8.6E-08 47.6 4.2 36 8-44 108-143 (269)
383 PRK06921 hypothetical protein; 96.5 0.005 1.1E-07 47.0 4.7 37 6-43 117-154 (266)
384 PRK08840 replicative DNA helic 96.5 0.0059 1.3E-07 50.3 5.4 41 7-47 217-258 (464)
385 PRK12296 obgE GTPase CgtA; Rev 96.5 0.06 1.3E-06 44.8 11.1 21 7-28 160-180 (500)
386 TIGR00665 DnaB replicative DNA 96.5 0.0061 1.3E-07 49.9 5.4 41 8-48 196-237 (434)
387 PRK10436 hypothetical protein; 96.5 0.082 1.8E-06 43.6 11.9 34 9-42 220-253 (462)
388 PRK04004 translation initiatio 96.5 0.059 1.3E-06 45.9 11.4 64 119-186 72-135 (586)
389 cd04119 RJL RJL (RabJ-Like) su 96.5 0.077 1.7E-06 36.8 10.4 67 116-186 47-122 (168)
390 PF08433 KTI12: Chromatin asso 96.4 0.0049 1.1E-07 47.2 4.4 36 9-44 3-38 (270)
391 PRK06761 hypothetical protein; 96.4 0.0052 1.1E-07 47.2 4.6 38 8-45 4-42 (282)
392 PRK08084 DNA replication initi 96.4 0.0054 1.2E-07 45.9 4.6 37 10-46 48-84 (235)
393 cd04118 Rab24 Rab24 subfamily. 96.4 0.079 1.7E-06 38.1 10.6 65 118-186 50-117 (193)
394 cd00009 AAA The AAA+ (ATPases 96.4 0.0062 1.3E-07 41.2 4.5 40 7-47 20-59 (151)
395 cd01865 Rab3 Rab3 subfamily. 96.4 0.077 1.7E-06 37.1 10.2 66 117-186 49-118 (165)
396 cd04127 Rab27A Rab27a subfamil 96.4 0.075 1.6E-06 37.6 10.3 67 116-186 61-132 (180)
397 PRK05506 bifunctional sulfate 96.4 0.0061 1.3E-07 52.3 5.3 44 7-50 460-503 (632)
398 COG1663 LpxK Tetraacyldisaccha 96.4 0.029 6.3E-07 43.9 8.4 41 7-47 48-89 (336)
399 cd00544 CobU Adenosylcobinamid 96.4 0.012 2.6E-07 41.8 5.9 32 10-44 2-33 (169)
400 KOG2743|consensus 96.4 0.089 1.9E-06 40.7 10.7 34 11-46 61-94 (391)
401 PLN02796 D-glycerate 3-kinase 96.4 0.0074 1.6E-07 47.5 5.2 39 7-45 100-138 (347)
402 PRK05748 replicative DNA helic 96.4 0.0065 1.4E-07 50.0 5.2 41 8-48 204-245 (448)
403 PRK00131 aroK shikimate kinase 96.4 0.0043 9.3E-08 43.8 3.7 32 7-44 5-36 (175)
404 PRK09270 nucleoside triphospha 96.4 0.0078 1.7E-07 44.9 5.2 41 5-46 32-73 (229)
405 PRK06904 replicative DNA helic 96.4 0.0065 1.4E-07 50.2 5.2 40 8-47 222-262 (472)
406 PRK05537 bifunctional sulfate 96.4 0.007 1.5E-07 51.2 5.4 43 5-48 391-434 (568)
407 PLN03110 Rab GTPase; Provision 96.4 0.082 1.8E-06 39.0 10.5 66 117-186 60-129 (216)
408 TIGR02533 type_II_gspE general 96.4 0.067 1.5E-06 44.5 10.9 34 9-42 244-277 (486)
409 PRK03333 coaE dephospho-CoA ki 96.4 0.002 4.2E-08 52.1 2.0 34 6-46 1-34 (395)
410 TIGR00554 panK_bact pantothena 96.4 0.01 2.2E-07 45.9 5.8 42 5-47 61-104 (290)
411 COG4108 PrfC Peptide chain rel 96.4 0.035 7.5E-07 44.9 8.8 66 116-187 79-146 (528)
412 PF12846 AAA_10: AAA-like doma 96.4 0.0061 1.3E-07 46.9 4.7 34 11-44 5-38 (304)
413 cd04122 Rab14 Rab14 subfamily. 96.4 0.11 2.4E-06 36.3 10.7 66 117-186 50-119 (166)
414 PF06414 Zeta_toxin: Zeta toxi 96.4 0.0043 9.4E-08 45.2 3.6 44 3-48 11-54 (199)
415 PRK07933 thymidylate kinase; V 96.3 0.0085 1.8E-07 44.2 5.1 34 11-44 4-37 (213)
416 PRK03003 GTP-binding protein D 96.3 0.087 1.9E-06 43.7 11.5 42 144-186 293-334 (472)
417 cd01393 recA_like RecA is a b 96.3 0.0075 1.6E-07 44.7 4.8 39 7-46 20-64 (226)
418 PTZ00035 Rad51 protein; Provis 96.3 0.011 2.4E-07 46.8 5.9 39 8-46 119-163 (337)
419 PRK11058 GTPase HflX; Provisio 96.3 0.094 2E-06 42.9 11.4 65 119-186 246-321 (426)
420 PLN03187 meiotic recombination 96.3 0.013 2.9E-07 46.3 6.3 40 7-46 126-171 (344)
421 cd04123 Rab21 Rab21 subfamily. 96.3 0.099 2.2E-06 36.0 10.2 67 117-187 48-118 (162)
422 cd00879 Sar1 Sar1 subfamily. 96.3 0.1 2.3E-06 37.3 10.5 66 117-186 62-132 (190)
423 COG2109 BtuR ATP:corrinoid ade 96.3 0.11 2.3E-06 37.4 10.0 144 9-173 31-183 (198)
424 PRK06321 replicative DNA helic 96.2 0.0097 2.1E-07 49.2 5.4 41 8-48 227-268 (472)
425 PLN03071 GTP-binding nuclear p 96.2 0.13 2.9E-06 37.9 10.9 66 117-186 61-129 (219)
426 PF01591 6PF2K: 6-phosphofruct 96.2 0.019 4.1E-07 42.6 6.3 111 4-141 9-119 (222)
427 COG0378 HypB Ni2+-binding GTPa 96.2 0.054 1.2E-06 39.1 8.3 39 7-47 14-52 (202)
428 COG0572 Udk Uridine kinase [Nu 96.2 0.012 2.5E-07 43.3 5.0 39 7-48 9-47 (218)
429 cd01131 PilT Pilus retraction 96.2 0.25 5.5E-06 35.9 12.1 34 10-43 4-38 (198)
430 PRK06547 hypothetical protein; 96.2 0.0057 1.2E-07 43.6 3.3 36 5-46 14-49 (172)
431 PF13401 AAA_22: AAA domain; P 96.2 0.007 1.5E-07 40.6 3.6 41 7-47 4-49 (131)
432 PLN03186 DNA repair protein RA 96.2 0.019 4.2E-07 45.4 6.5 40 7-46 123-168 (342)
433 cd04155 Arl3 Arl3 subfamily. 96.2 0.11 2.4E-06 36.4 9.9 22 6-28 14-35 (173)
434 PLN03118 Rab family protein; P 96.1 0.092 2E-06 38.4 9.7 66 117-186 61-132 (211)
435 TIGR00152 dephospho-CoA kinase 96.1 0.0028 6E-08 45.7 1.5 32 9-46 2-33 (188)
436 PF05729 NACHT: NACHT domain 96.1 0.007 1.5E-07 42.2 3.5 27 9-35 2-28 (166)
437 PRK07261 topology modulation p 96.1 0.0083 1.8E-07 42.7 3.9 23 8-31 2-24 (171)
438 PRK09165 replicative DNA helic 96.1 0.011 2.4E-07 49.2 5.2 43 8-50 218-275 (497)
439 PTZ00301 uridine kinase; Provi 96.1 0.015 3.2E-07 42.9 5.3 39 7-46 4-44 (210)
440 TIGR02655 circ_KaiC circadian 96.1 0.021 4.5E-07 47.5 6.7 39 8-46 22-61 (484)
441 cd04117 Rab15 Rab15 subfamily. 96.1 0.18 4E-06 35.1 10.6 66 117-186 48-117 (161)
442 PRK05636 replicative DNA helic 96.1 0.013 2.8E-07 48.8 5.4 41 7-47 265-306 (505)
443 cd01876 YihA_EngB The YihA (En 96.1 0.23 4.9E-06 34.2 11.1 19 9-28 2-20 (170)
444 PRK14527 adenylate kinase; Pro 96.0 0.0095 2.1E-07 43.1 4.0 31 1-32 1-31 (191)
445 PRK09518 bifunctional cytidyla 96.0 0.14 2.9E-06 44.8 11.5 42 144-186 532-573 (712)
446 PRK01906 tetraacyldisaccharide 96.0 0.0082 1.8E-07 47.4 3.7 41 7-47 57-98 (338)
447 PF09848 DUF2075: Uncharacteri 96.0 0.011 2.3E-07 47.1 4.4 38 7-44 1-40 (352)
448 PRK07004 replicative DNA helic 96.0 0.013 2.9E-07 48.3 5.0 41 8-48 214-255 (460)
449 PRK06851 hypothetical protein; 96.0 0.025 5.4E-07 45.1 6.4 45 6-50 213-257 (367)
450 TIGR03172 probable selenium-de 95.9 0.0082 1.8E-07 44.8 3.3 30 9-41 2-31 (232)
451 PF13191 AAA_16: AAA ATPase do 95.9 0.015 3.3E-07 41.3 4.6 40 7-46 24-63 (185)
452 PHA02530 pseT polynucleotide k 95.9 0.0091 2E-07 46.3 3.6 37 6-46 1-37 (300)
453 PF13604 AAA_30: AAA domain; P 95.9 0.017 3.8E-07 42.0 4.8 35 9-43 20-54 (196)
454 PF13671 AAA_33: AAA domain; P 95.9 0.0084 1.8E-07 40.9 3.0 33 9-46 1-33 (143)
455 cd04128 Spg1 Spg1p. Spg1p (se 95.9 0.26 5.6E-06 35.3 10.8 65 117-186 48-116 (182)
456 PRK14490 putative bifunctional 95.9 0.029 6.4E-07 44.9 6.4 38 5-44 4-41 (369)
457 cd02021 GntK Gluconate kinase 95.9 0.0093 2E-07 41.2 3.1 33 10-47 2-34 (150)
458 PRK00698 tmk thymidylate kinas 95.9 0.021 4.6E-07 41.5 5.2 35 6-41 3-37 (205)
459 PRK14731 coaE dephospho-CoA ki 95.8 0.021 4.6E-07 41.9 5.1 34 5-45 4-37 (208)
460 PRK13946 shikimate kinase; Pro 95.8 0.013 2.9E-07 42.1 3.9 34 6-45 10-43 (184)
461 PF00931 NB-ARC: NB-ARC domain 95.8 0.016 3.5E-07 44.4 4.6 42 4-46 17-60 (287)
462 PF01926 MMR_HSR1: 50S ribosom 95.8 0.06 1.3E-06 35.3 6.8 63 117-183 46-116 (116)
463 COG2074 2-phosphoglycerate kin 95.8 0.01 2.3E-07 44.5 3.3 28 5-32 87-114 (299)
464 PRK04040 adenylate kinase; Pro 95.8 0.019 4.1E-07 41.5 4.6 31 6-38 2-32 (188)
465 cd02024 NRK1 Nicotinamide ribo 95.8 0.01 2.2E-07 42.9 3.1 32 11-46 3-34 (187)
466 COG0125 Tmk Thymidylate kinase 95.8 0.026 5.7E-07 41.4 5.3 36 6-42 3-38 (208)
467 TIGR02236 recomb_radA DNA repa 95.8 0.019 4E-07 44.9 4.9 40 7-46 95-140 (310)
468 PRK13973 thymidylate kinase; P 95.8 0.026 5.7E-07 41.6 5.4 36 6-42 3-38 (213)
469 PRK04220 2-phosphoglycerate ki 95.8 0.019 4.1E-07 44.5 4.8 42 6-51 91-132 (301)
470 PRK13947 shikimate kinase; Pro 95.8 0.018 3.8E-07 40.7 4.4 33 7-45 2-34 (171)
471 cd00157 Rho Rho (Ras homology) 95.7 0.033 7.2E-07 38.9 5.6 67 116-186 46-116 (171)
472 PLN02348 phosphoribulokinase 95.7 0.027 5.8E-07 45.2 5.5 40 6-46 49-103 (395)
473 TIGR02239 recomb_RAD51 DNA rep 95.7 0.035 7.6E-07 43.5 6.1 39 8-46 97-141 (316)
474 COG3265 GntK Gluconate kinase 95.7 0.074 1.6E-06 36.7 6.8 30 14-48 2-31 (161)
475 COG1102 Cmk Cytidylate kinase 95.7 0.011 2.4E-07 41.4 2.8 24 9-32 2-25 (179)
476 PRK07429 phosphoribulokinase; 95.6 0.026 5.7E-07 44.4 5.1 35 7-44 9-43 (327)
477 PRK03731 aroL shikimate kinase 95.6 0.018 3.8E-07 40.8 3.9 34 7-46 3-36 (171)
478 cd04111 Rab39 Rab39 subfamily. 95.6 0.47 1E-05 34.8 11.5 67 117-186 51-121 (211)
479 PRK12339 2-phosphoglycerate ki 95.6 0.015 3.3E-07 42.3 3.5 38 7-48 3-40 (197)
480 KOG1423|consensus 95.6 0.099 2.2E-06 40.5 7.8 33 7-46 73-105 (379)
481 PF03266 NTPase_1: NTPase; In 95.6 0.019 4.2E-07 40.7 3.8 28 11-38 3-30 (168)
482 PRK12338 hypothetical protein; 95.5 0.015 3.1E-07 45.5 3.3 38 7-48 4-41 (319)
483 cd01895 EngA2 EngA2 subfamily. 95.5 0.094 2E-06 36.5 7.3 67 117-186 49-125 (174)
484 PF00025 Arf: ADP-ribosylation 95.5 0.1 2.3E-06 37.1 7.6 66 116-186 56-127 (175)
485 PF13238 AAA_18: AAA domain; P 95.5 0.015 3.3E-07 38.7 3.0 21 11-31 2-22 (129)
486 TIGR01360 aden_kin_iso1 adenyl 95.5 0.018 4E-07 41.2 3.6 25 6-31 3-27 (188)
487 PF07724 AAA_2: AAA domain (Cd 95.5 0.04 8.6E-07 39.2 5.2 41 8-48 4-45 (171)
488 PRK04301 radA DNA repair and r 95.5 0.027 5.8E-07 44.2 4.7 40 7-46 102-147 (317)
489 PRK09866 hypothetical protein; 95.4 0.074 1.6E-06 45.4 7.3 68 117-187 229-302 (741)
490 cd01852 AIG1 AIG1 (avrRpt2-ind 95.4 0.3 6.5E-06 35.3 9.9 20 8-28 2-21 (196)
491 COG1435 Tdk Thymidine kinase [ 95.4 0.56 1.2E-05 34.0 10.7 102 5-140 3-105 (201)
492 PF13086 AAA_11: AAA domain; P 95.4 0.024 5.1E-07 41.8 4.0 34 9-42 19-60 (236)
493 COG1072 CoaA Panthothenate kin 95.4 0.043 9.4E-07 41.7 5.3 43 4-46 79-123 (283)
494 COG2804 PulE Type II secretory 95.3 0.09 2E-06 43.4 7.4 119 4-168 256-374 (500)
495 PRK13948 shikimate kinase; Pro 95.3 0.036 7.8E-07 39.9 4.6 33 7-45 11-43 (182)
496 PLN03108 Rab family protein; P 95.3 0.64 1.4E-05 34.0 11.3 23 5-28 5-27 (210)
497 PF00004 AAA: ATPase family as 95.3 0.038 8.3E-07 36.8 4.5 32 12-46 3-34 (132)
498 TIGR00362 DnaA chromosomal rep 95.2 0.029 6.3E-07 45.5 4.4 35 10-44 139-175 (405)
499 PRK05124 cysN sulfate adenylyl 95.2 0.062 1.4E-06 44.6 6.3 69 116-187 105-173 (474)
500 PRK06851 hypothetical protein; 95.2 0.071 1.5E-06 42.6 6.3 46 5-50 28-73 (367)
No 1
>KOG3022|consensus
Probab=100.00 E-value=1.1e-37 Score=228.24 Aligned_cols=187 Identities=62% Similarity=1.154 Sum_probs=174.5
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEE
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAV 81 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (192)
+.+-.++|+|.|+|||+||||+|+|||..||..|++|.++|.|...|+++.++|.+.....+...+|.+. ....++.+
T Consensus 43 l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv--~~~~~l~~ 120 (300)
T KOG3022|consen 43 LSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPV--VVNKNLKL 120 (300)
T ss_pred ccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeeecCCCceee--eecCCeEE
Confidence 4567789999999999999999999999999999999999999999999999999999988888899887 34789999
Q ss_pred EeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHH
Q psy9977 82 MSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~ 161 (192)
++.+.......+..+|+++.....+++++....|++.||+|||+||+.++........+. ..|..++|+.|...++..
T Consensus 121 mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~--~~~gAviVTTPQ~vAl~D 198 (300)
T KOG3022|consen 121 MSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLR--ESDGAVIVTTPQEVALQD 198 (300)
T ss_pred EEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeeccc--ccCceEEEeCchhhhhHH
Confidence 999999998899999999999999999999999999999999999999999987776653 348899999999999999
Q ss_pred HHHHHHHhHhcCCceeeEEeccCccCCCCCC
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGYTCPHCK 192 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~~~~~~~ 192 (192)
+++-++.+++.+++++|+|-||..|+|+||+
T Consensus 199 v~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~ 229 (300)
T KOG3022|consen 199 VRKEIDFCRKAGIPILGVVENMSGFVCPKCG 229 (300)
T ss_pred HHhhhhhhhhcCCceEEEEeccccccCCCCC
Confidence 9999999999999999999999999999996
No 2
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.8e-33 Score=210.07 Aligned_cols=179 Identities=45% Similarity=0.766 Sum_probs=153.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCC--CcccccCC-CCce
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEG--WVPVYTDA-SQTL 79 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~-~~~l 79 (192)
+..++|+++|+|||+||||+|+|||..+|+.|+||+++|+|...|+++.+|+.+... +.+...+ +.+..... ..++
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~l 134 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL 134 (265)
T ss_pred ccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceE
Confidence 367899999999999999999999999999999999999999999999999997643 3333333 55544333 5778
Q ss_pred EEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccH
Q psy9977 80 AVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~ 159 (192)
++++.+.. ...+.+......+++++..+.|..|||||||+||+..+.....+..+ .|.+++|+.|+....
T Consensus 135 si~~~~~~------p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~----~~g~viVt~p~~~~~ 204 (265)
T COG0489 135 SILPLGPV------PVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRI----PDGVVIVTTPGKTAL 204 (265)
T ss_pred EEEecCCC------CCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhcc----CCeEEEEeCCccchH
Confidence 88776653 33345566788999999999976699999999999999998888885 899999999999999
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccCCCCCC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYTCPHCK 192 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~~~~~~ 192 (192)
..+++.++.+++.+.+++|+|.|+.++.|+.||
T Consensus 205 ~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~ 237 (265)
T COG0489 205 EDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG 237 (265)
T ss_pred HHHHHHHHHHHhcCCceEEEEecCccCcccccC
Confidence 999999999999999999999999999999995
No 3
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=8.5e-32 Score=211.91 Aligned_cols=182 Identities=42% Similarity=0.779 Sum_probs=132.1
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCcccc-CCCCcccccCCCCceEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQC-PEGWVPVYTDASQTLAV 81 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 81 (192)
++.+++|+|+|+|||+||||+|+|||..|++.|+||++||+|++.++++.+||.+....... ...+.+. ...++..
T Consensus 104 ~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~---~~~g~~~ 180 (369)
T PRK11670 104 NGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPI---MAHGLAT 180 (369)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeee---eccCccc
Confidence 45779999999999999999999999999999999999999999999988888643211100 0001111 0111211
Q ss_pred EeeccccccCCcccccCCchhHHHHHHHHH-hhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHH
Q psy9977 82 MSIGFLLKNRDDAIIWRGPKKTAMIRQIIN-DVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~ 160 (192)
.+.+... .......+.++.....+.+++. .+. ++|||||||+||+.++........+ .+|.+++|+.++..++.
T Consensus 181 ~~~~~l~-~~~~~~i~~g~~~~~~l~~~l~~~~~-~~yDyvIID~PPg~gd~~l~~~~l~---aad~viiV~tp~~~s~~ 255 (369)
T PRK11670 181 NSIGYLV-TDDNAMVWRGPMASKALMQMLQETLW-PDLDYLVLDMPPGTGDIQLTLAQNI---PVTGAVVVTTPQDIALI 255 (369)
T ss_pred ccHHHhc-CcCcceeecCcchHHHHHHHHHHHhh-ccCCEEEEeCCCCCchHHHHHhhhc---cCCeEEEEecCchhHHH
Confidence 1111111 1122344455555566777764 344 7999999999999987543222222 38999999999999999
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccCCCCCC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYTCPHCK 192 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~~~~~~ 192 (192)
.+.+.++.+++.+++++|+|.|++++.|++|+
T Consensus 256 da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~ 287 (369)
T PRK11670 256 DAKKGIVMFEKVEVPVLGIVENMSMHICSNCG 287 (369)
T ss_pred HHHHHHHHHhccCCCeEEEEEcCCccccCCcc
Confidence 99999999999999999999999999999885
No 4
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.97 E-value=4.2e-30 Score=193.90 Aligned_cols=167 Identities=26% Similarity=0.447 Sum_probs=131.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC--ccccC---CCCcccccCCCCceEE
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD--VHQCP---EGWVPVYTDASQTLAV 81 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~l~~ 81 (192)
++|+|+|+|||+||||+|+|||..|+++|++|++||+|+++++++.++|.+... +.+.. ..+.+.......++++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKV 80 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEE
Confidence 589999999999999999999999999999999999999888899999876532 22221 2233333344568999
Q ss_pred EeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHH
Q psy9977 82 MSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~ 161 (192)
++.+...... .......+.+.+..++ +.|||||+|+||+.+......+.. +|.+++|+.++..++..
T Consensus 81 lp~~~~~~~~-------~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~l~~-----ad~vliv~~~~~~s~~~ 147 (251)
T TIGR01969 81 IPAGVSLEGL-------RKADPDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTALAA-----ADELLLVVNPEISSITD 147 (251)
T ss_pred EeCCCCHHHH-------hhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHHHHh-----CCeEEEEECCCCchHHH
Confidence 8865332211 0123456778888777 799999999999998877666665 99999999999999999
Q ss_pred HHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.++++..+..+.+..++|+|+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 148 ALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred HHHHHHHHHhcCCceEEEEEECCCc
Confidence 9888888888888889999999864
No 5
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.97 E-value=1e-29 Score=194.10 Aligned_cols=170 Identities=18% Similarity=0.340 Sum_probs=135.3
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCCC--cc-cc-cCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEGW--VP-VY-TDASQ 77 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~~--~~-~~-~~~~~ 77 (192)
++..++|+|+|++||+||||+|.|||..+++.|+||++||+|++.+.++.+++.+... +.+...+. .+ .. ....+
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~ 179 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALE 179 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCC
Confidence 5678999999999999999999999999999999999999999999888888765442 32222221 11 22 23357
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.+.....+.+.. ....+.++++.++ +.|||||||+||.........+.. .+|.+++|++++..
T Consensus 180 ~l~~lp~g~~~~~~~~~~------~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~~~----~~d~vilV~~~~~t 248 (274)
T TIGR03029 180 NLSVLPAGAIPPNPQELL------ARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIVAT----RARGTLIVSRVNET 248 (274)
T ss_pred CEEEEeCcCCCCCHHHHh------CcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHHHH----hCCeEEEEEECCCC
Confidence 999999987654432211 1235778888887 899999999999876555555555 39999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEecc
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENM 183 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~ 183 (192)
+...+.+.++.+++.+.+++|+|+|+
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 249 RLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999999999996
No 6
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.97 E-value=1.6e-29 Score=179.99 Aligned_cols=138 Identities=58% Similarity=1.020 Sum_probs=111.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
+|+|+|+|||+||||+|.|||..+++.|+||++||+|+++++++.++.
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~-------------------------------- 48 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR-------------------------------- 48 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh--------------------------------
Confidence 589999999999999999999999999999999999999865532200
Q ss_pred cccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHH-HhhhhcCCeEEEecCCCcccHHHHHHHH
Q psy9977 88 LKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVME-CLREVQCDGAVLVTTPQAVSIEDVRKEI 166 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~-~~~~~~ad~viiv~~~~~~~~~~~~~~~ 166 (192)
++.....+++++..+..++||+||+|+||..++....... . .+|.+++|+.|+..++..+.+++
T Consensus 49 -----------~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~----~ad~viiV~~p~~~s~~~~~~~~ 113 (169)
T cd02037 49 -----------GPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSL----PIDGAVIVTTPQEVALDDVRKAI 113 (169)
T ss_pred -----------CcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhcc----CCCeEEEEECCchhhHHHHHHHH
Confidence 0011233555555443369999999999998765543332 2 49999999999999999999999
Q ss_pred HHhHhcCCceeeEEeccCccCCCCCC
Q psy9977 167 TFCKKTNIKILGLIENMSGYTCPHCK 192 (192)
Q Consensus 167 ~~l~~~~~~~~g~v~N~~~~~~~~~~ 192 (192)
+.+++.+.+..|+|+||++..|.+|.
T Consensus 114 ~~l~~~~~~~~gvv~N~~~~~~~~~~ 139 (169)
T cd02037 114 DMFKKVNIPILGVVENMSYFVCPHCG 139 (169)
T ss_pred HHHHhcCCCeEEEEEcCCcccCCCCC
Confidence 99999999999999999998887763
No 7
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.97 E-value=2e-29 Score=184.94 Aligned_cols=167 Identities=24% Similarity=0.344 Sum_probs=130.2
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCC----CCccccc-CC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPE----GWVPVYT-DA 75 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~-~~ 75 (192)
++.+++|+|+|+|||+||||++++||++|++ .|+||++||+|++.++++.+++.+... +.+... .+.+... ..
T Consensus 32 ~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~ 111 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTN 111 (207)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCC
Confidence 4578999999999999999999999999997 799999999999998888888876542 222111 2333332 23
Q ss_pred CCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCC--cEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecC
Q psy9977 76 SQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDV--DYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~--D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~ 153 (192)
.+++++++.+.....+.+. .....+.++++.++ ++| ||||||+||.........+... +|.+++|++
T Consensus 112 ~~~l~vl~~g~~~~~~~~~------~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l~~~----aD~viiV~~ 180 (207)
T TIGR03018 112 IGRLSLLPAGRRHPNPTEL------LASQRMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARALARL----VGQIVLVVE 180 (207)
T ss_pred CCCEEEEeCCCCCCCHHHH------hCcHHHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHHHHh----CCEEEEEEE
Confidence 6789999877554332111 12356788888887 677 9999999999976555555542 999999999
Q ss_pred CCcccHHHHHHHHHHhHhcCCceeeEEec
Q psy9977 154 PQAVSIEDVRKEITFCKKTNIKILGLIEN 182 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~g~v~N 182 (192)
++..+...+.+.++.++ +.+++|+|+|
T Consensus 181 ~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 181 EGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 99999999999999999 6788999998
No 8
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.97 E-value=1.7e-29 Score=185.09 Aligned_cols=173 Identities=24% Similarity=0.374 Sum_probs=133.8
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC--Ccccc---CCCCcccc-cCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS--DVHQC---PEGWVPVY-TDASQ 77 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~-~~~~~ 77 (192)
..+|+|+|+|+|||+||||++.+||..+++.|+||++||+|++.+.+..+++.+.. .+.+. ...+.+.. ....+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~ 94 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIE 94 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCC
Confidence 34899999999999999999999999999999999999999999888777765542 22222 12222322 23347
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.+.....+... .....++++++.++ +.||+||||+||.........+.. .+|.+++|+.++..
T Consensus 95 ~l~~l~~g~~~~~~~~~------l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~~~~----~~D~vilV~~~~~~ 163 (204)
T TIGR01007 95 NLFVITSGPVPPNPTEL------LQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDAAIIAR----ACDASILVTDAGEI 163 (204)
T ss_pred CEEEEeCCCCCCCHHHH------hCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHH----hCCeEEEEEECCCC
Confidence 99999887654332211 12345778888887 799999999999654444444444 39999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+...+.+.++.+++.+.++.|+|+|+++..
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 164 KKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 999999999999999999999999998864
No 9
>CHL00175 minD septum-site determining protein; Validated
Probab=99.96 E-value=1.2e-28 Score=188.97 Aligned_cols=170 Identities=22% Similarity=0.360 Sum_probs=133.1
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---ccccC---CCCccccc--C
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---VHQCP---EGWVPVYT--D 74 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~--~ 74 (192)
.+++++|+|+|+|||+||||+|+|||.+|++.|+||++||+|++.+++..++|.+... +.+.. ..+.+... .
T Consensus 12 ~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~ 91 (281)
T CHL00175 12 ATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDK 91 (281)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecC
Confidence 4577999999999999999999999999999999999999999988899888876432 11211 12222221 2
Q ss_pred CCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCC-CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecC
Q psy9977 75 ASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWK-DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~ 153 (192)
..+++++++.+..... .......+.++++.++ . .|||||||+||++.......+.. +|.+++|+.
T Consensus 92 ~~~~l~~l~~~~~~~~--------~~~~~~~l~~~l~~l~-~~~yD~VIiDtpp~~~~~~~~~l~~-----aD~viiV~~ 157 (281)
T CHL00175 92 RWKNLSLLAISKNRQR--------YNVTRKNMNMLVDSLK-NRGYDYILIDCPAGIDVGFINAIAP-----AQEAIVVTT 157 (281)
T ss_pred CCCCeEEEeCCCchhh--------ccCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHHh-----cCeeEEEcC
Confidence 3578999986533211 0112345788888887 5 89999999999998777666655 999999999
Q ss_pred CCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 154 PQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
++..++..+.++++.++..+....++|+|+++.
T Consensus 158 p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 158 PEITAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CChHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 999999999999999998887778999999864
No 10
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.96 E-value=5.9e-29 Score=176.91 Aligned_cols=169 Identities=24% Similarity=0.357 Sum_probs=138.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccc------cCCCCccc--ccCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQ------CPEGWVPV--YTDAS 76 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~ 76 (192)
+.++|.++|+|||+||||.++|++..||++|+||++||+|..-..+...+|++.....+ ......+. .....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 46899999999999999999999999999999999999998888888889999875222 22333332 34568
Q ss_pred CceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc
Q psy9977 77 QTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
+++.++|+.+.... .....+.++++++.|+...|||||+|+|++.+..+...+.. ||..++|++|+.
T Consensus 81 ~nL~lLPAsQtrdK--------dalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~~-----Ad~AiVVtnPEv 147 (272)
T COG2894 81 ENLFLLPASQTRDK--------DALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVYF-----ADEAIVVTNPEV 147 (272)
T ss_pred CceEecccccccCc--------ccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhhhc-----cceEEEEcCCCc
Confidence 89999887643332 23456788888888886799999999999999988777776 999999999999
Q ss_pred ccHHHHHHHHHHhHhcC----Cc---eeeEEeccCcc
Q psy9977 157 VSIEDVRKEITFCKKTN----IK---ILGLIENMSGY 186 (192)
Q Consensus 157 ~~~~~~~~~~~~l~~~~----~~---~~g~v~N~~~~ 186 (192)
.+++.+.|++..|+..+ .. ...+++||+++
T Consensus 148 SsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p 184 (272)
T COG2894 148 SSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRP 184 (272)
T ss_pred cccccchhheeehhcccchhhcCCcccceEEEEccCH
Confidence 99999999999987543 12 36799999986
No 11
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.96 E-value=1e-27 Score=181.88 Aligned_cols=167 Identities=27% Similarity=0.413 Sum_probs=129.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---ccccCCC---Cccccc--CCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---VHQCPEG---WVPVYT--DASQ 77 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~--~~~~ 77 (192)
.|+|+|+|.|||+||||+|+|||..|+++|+||++||+|++.+++..++|.+... +.+...+ +.+.+. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 4799999999999999999999999999999999999999988888888875432 1111111 112221 1346
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.+..... .......+.++++.++ +.|||||||+||+........+.. +|.+++|+.++..
T Consensus 81 ~l~~l~~~~~~~~--------~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~l~~-----aD~viiv~~~~~~ 146 (261)
T TIGR01968 81 NLYLLPASQTRDK--------DAVTPEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNAVAP-----ADEAIVVTTPEVS 146 (261)
T ss_pred CeEEEeCCCchhh--------hhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHHHHh-----CCeEEEEcCCCcH
Confidence 8888886542211 1122345778888887 789999999999998776666655 9999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
++..+.++++.++..+....++++|+++.
T Consensus 147 s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 147 AVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 99999999999998777678899999864
No 12
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.96 E-value=1.1e-27 Score=179.72 Aligned_cols=168 Identities=30% Similarity=0.414 Sum_probs=138.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHH-HHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC--ccc---cCCCCcccccCCC-C
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQL-ALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD--VHQ---CPEGWVPVYTDAS-Q 77 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~l-A~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-~ 77 (192)
++++|+|.|+|||+||||+++|| |..++..|++|+++|+|...++++.++|..... +.. ....+.+...... .
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 47899999999999999999999 555555888889999999999999999998853 222 2445555555555 9
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
|++++|.+....... ....+.++.++..+. ..||||++|+|++........+.. +|.+++|+.|+..
T Consensus 81 gl~vipg~~~~~~~~-------~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~~~~~~~-----sd~~viVt~pe~~ 147 (262)
T COG0455 81 GLYVLPGGSGLEDLA-------KLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDTLSFILS-----SDELVIVTTPEPT 147 (262)
T ss_pred CEEEeeCCCChHHHh-------hcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHHHHHHHh-----cCcEEEEeCCCcc
Confidence 999999875444321 134566777887787 788999999999999888777776 8999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceee--EEeccCc
Q psy9977 158 SIEDVRKEITFCKKTNIKILG--LIENMSG 185 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g--~v~N~~~ 185 (192)
++..+..+++.+.+.+.+..+ +|+|+++
T Consensus 148 si~~A~~~i~~~~~~~~~~~~~~vV~N~v~ 177 (262)
T COG0455 148 SITDAYKTIKILSKLGLDLLGRRVVLNRVR 177 (262)
T ss_pred hHHHHHHHHHHHHHcCCccccceEEEEecc
Confidence 999999999999999999888 9999996
No 13
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.96 E-value=7.3e-28 Score=181.23 Aligned_cols=172 Identities=20% Similarity=0.266 Sum_probs=121.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---cccc---CCCCcccccCCCCce
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---VHQC---PEGWVPVYTDASQTL 79 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~l 79 (192)
||+|+|+|+|||+||||+|+|||..|+++|+||++||+|++. +++..+|.+... +... ...+.+.......++
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 79 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGV 79 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCe
Confidence 589999999999999999999999999999999999999985 577777755432 1111 112333333345788
Q ss_pred EEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccH
Q psy9977 80 AVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~ 159 (192)
++++.+.......... .......+++++..+++..||+||||+||+........+.. +|.+++|+.++..++
T Consensus 80 ~~ip~~~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~l~~-----ad~vii~~~~~~~s~ 151 (246)
T TIGR03371 80 LFLPFGDLSADEREAY---QAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQALAA-----ADLVLVVVNADAACY 151 (246)
T ss_pred EEecCCCCcHHHHHHH---hhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHHHHh-----CCeEEEEeCCCHHHH
Confidence 8888654322111110 01123457777877763346999999999988877777766 999999999999999
Q ss_pred HHHHH-HHHHhHhcCC-ceeeEEeccCcc
Q psy9977 160 EDVRK-EITFCKKTNI-KILGLIENMSGY 186 (192)
Q Consensus 160 ~~~~~-~~~~l~~~~~-~~~g~v~N~~~~ 186 (192)
..+.+ +.+.++..+. ...++|+|+++.
T Consensus 152 ~~~~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 152 ATLHQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred HHHHHHHHHHhhcccccccceEEeeccCc
Confidence 98884 4444542222 236899999864
No 14
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.95 E-value=1.5e-27 Score=175.75 Aligned_cols=172 Identities=20% Similarity=0.162 Sum_probs=116.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-CccccC--------CCCcccccCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQCP--------EGWVPVYTDASQ 77 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~ 77 (192)
++|+|++ |||+||||+++|||..||++|+||++||+|++.+....+++.... .+.+.. ....+......+
T Consensus 1 ~~iav~g-KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212)
T ss_pred CEEEEEC-CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCCC
Confidence 4799995 999999999999999999999999999999997655555454322 222111 122233444568
Q ss_pred ceEEEeeccccccCCcccccCCch-hHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH-HHHHHhhhhcCCeEEEecCCC
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPK-KTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI-TVMECLREVQCDGAVLVTTPQ 155 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~-~~l~~~~~~~ad~viiv~~~~ 155 (192)
|+++++.+......... ..... ....++ .+..+. ++|||||||+++....... ..+. ...||.+++|++++
T Consensus 80 ~l~vlp~~~~~~~~~~~--~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~~~~~~~~~l~---~~~ad~vliv~~p~ 152 (212)
T cd02117 80 GVKCVESGGPEPGVGCA--GRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDVVCGGFAMPIR---EGKADEIYIVTSGE 152 (212)
T ss_pred CcEEEeCCCCCCCcccC--CcchhhHHHHHH-hccccc-cCCCEEEEecCCCceecccccccc---cccCcEEEEEeccc
Confidence 99999987655443211 11111 112233 455555 7999999999765532221 1223 01299999999999
Q ss_pred cccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 156 AVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 156 ~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
..++..+.++++.++.. +.++.|+|+||++.
T Consensus 153 ~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 153 FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 99998888877777643 66788999999874
No 15
>PRK11519 tyrosine kinase; Provisional
Probab=99.95 E-value=3.1e-27 Score=200.71 Aligned_cols=172 Identities=16% Similarity=0.243 Sum_probs=143.6
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccC---CCCcccc-cCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCP---EGWVPVY-TDASQ 77 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~ 77 (192)
++..++|+|+|++||+||||++.|||..+|+.|+||++||+|++.|.++.+++..... +.+.. ..+.+.+ ....+
T Consensus 523 ~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~ 602 (719)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIA 602 (719)
T ss_pred CCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcC
Confidence 4567999999999999999999999999999999999999999999999888866442 33322 2333333 34568
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.|..++++.+. .....+.++++.++ ++||+||||+||.....+...+.. .+|.+++|+.++.+
T Consensus 603 ~l~~lp~g~~~~~~~el------l~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~l~~----~~d~~l~Vvr~~~t 671 (719)
T PRK11519 603 NFDLIPRGQVPPNPSEL------LMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIVGR----HVGTTLMVARYAVN 671 (719)
T ss_pred CEEEEeCCCCCCCHHHH------hhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHHHHH----HCCeEEEEEeCCCC
Confidence 99999998766665432 24567888888888 899999999999988777677777 49999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
+...+...++.+++.+.++.|+|+|+++
T Consensus 672 ~~~~~~~~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 672 TLKEVETSLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEEeCCc
Confidence 9999999999999999999999999985
No 16
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.95 E-value=1.4e-27 Score=190.43 Aligned_cols=175 Identities=22% Similarity=0.243 Sum_probs=126.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-------ccc------cCCCCccc
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-------VHQ------CPEGWVPV 71 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~ 71 (192)
.+++|+|+|.|||+||||+|+|||..||++|+||++||+|++ ++++.+||..+.. +.. ....+.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ-~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~ 198 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ-ASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDV 198 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC-CCHHHHcCCCccccccccccHHHHHhccccCCCHHHh
Confidence 568999999999999999999999999999999999999999 5778888765421 110 01222222
Q ss_pred c-cCCCCceEEEeeccccccCCccc----c---cCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhh
Q psy9977 72 Y-TDASQTLAVMSIGFLLKNRDDAI----I---WRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREV 143 (192)
Q Consensus 72 ~-~~~~~~l~~~~~~~~~~~~~~~~----~---~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~ 143 (192)
+ .+..+|++++|.+.....-+... . .........+++.++.+. ++|||||||+||..+......+.+
T Consensus 199 i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~~al~a---- 273 (405)
T PRK13869 199 IRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTLSGLCA---- 273 (405)
T ss_pred eeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHHHHHHH----
Confidence 2 34568999999764332110000 0 000112345778888887 799999999999998877777776
Q ss_pred cCCeEEEecCCCcccHHHHHHHHHH-------hHhc--C--CceeeEEeccCcc
Q psy9977 144 QCDGAVLVTTPQAVSIEDVRKEITF-------CKKT--N--IKILGLIENMSGY 186 (192)
Q Consensus 144 ~ad~viiv~~~~~~~~~~~~~~~~~-------l~~~--~--~~~~g~v~N~~~~ 186 (192)
||.+|+|+.++..++..+.++++. +++. + ...+++++|+++.
T Consensus 274 -Ad~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 274 -ATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred -cCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 999999999999998888888753 2222 2 3467899999875
No 17
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.95 E-value=5.1e-27 Score=178.98 Aligned_cols=169 Identities=21% Similarity=0.327 Sum_probs=126.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---ccc---cCCCCcccccC--CC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---VHQ---CPEGWVPVYTD--AS 76 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~--~~ 76 (192)
|+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.+++..++|.+... +.+ ....+.+.... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 46999999999999999999999999999999999999999888888888876432 111 11122222222 35
Q ss_pred CceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc
Q psy9977 77 QTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
.++++++.+.... .+ ......+.++++.+++..|||||+|+||+........+.. +|.+++|+.|+.
T Consensus 81 ~~~~~lp~~~~~~--~~------~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~l~~-----ad~vivv~~p~~ 147 (270)
T PRK10818 81 ENLYILPASQTRD--KD------ALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYF-----ADEAIITTNPEV 147 (270)
T ss_pred CCEEEecCCCCcc--hh------hhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHh-----CCeEEEEcCCCc
Confidence 7899888764321 11 1123345677777653489999999999998887777655 999999999999
Q ss_pred ccHHHHHHHHHHhHhc-------CCc-eeeEEeccCcc
Q psy9977 157 VSIEDVRKEITFCKKT-------NIK-ILGLIENMSGY 186 (192)
Q Consensus 157 ~~~~~~~~~~~~l~~~-------~~~-~~g~v~N~~~~ 186 (192)
.++..+.++++.++.. ..+ ..++|+|+++.
T Consensus 148 ~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 148 SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 9999999999987631 112 24799998874
No 18
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.95 E-value=4.8e-27 Score=180.81 Aligned_cols=174 Identities=18% Similarity=0.185 Sum_probs=119.9
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-Ccccc--------CCCCccc
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQC--------PEGWVPV 71 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~ 71 (192)
|++..+++|+| ++|||+||||+|+|||..|+++|+||++||+|++.++...+++.... .+.+. ...+.+.
T Consensus 1 ~~~~~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~ 79 (296)
T PRK13236 1 MTDENIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEV 79 (296)
T ss_pred CCCcCceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHh
Confidence 77888999999 78999999999999999999999999999999999888888875543 22222 1233344
Q ss_pred ccCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH-HH--HHHhhhhcCCeE
Q psy9977 72 YTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI-TV--MECLREVQCDGA 148 (192)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~-~~--l~~~~~~~ad~v 148 (192)
+.....|+++++++..... ....+......++.+.....+++||||+||+++....... .. +.. ||.+
T Consensus 80 i~~~~~gv~llpa~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~a-----AD~v 150 (296)
T PRK13236 80 MLTGFRGVKCVESGGPEPG----VGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGK-----AQEI 150 (296)
T ss_pred heeCCCCeEEEECCCCCCC----CCCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhcc-----CCEE
Confidence 5556789999997632211 1111222222233333222236999999999644322111 11 123 9999
Q ss_pred EEecCCCcccHHHHHHHHH----HhHhcCCceeeEEeccC
Q psy9977 149 VLVTTPQAVSIEDVRKEIT----FCKKTNIKILGLIENMS 184 (192)
Q Consensus 149 iiv~~~~~~~~~~~~~~~~----~l~~~~~~~~g~v~N~~ 184 (192)
++|+.|+..++..+.++.+ ..++.++++.|+|+||.
T Consensus 151 IIvttpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~ 190 (296)
T PRK13236 151 YIVTSGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSR 190 (296)
T ss_pred EEecCcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCC
Confidence 9999999999987775444 33355788999999984
No 19
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.95 E-value=8.4e-27 Score=198.23 Aligned_cols=173 Identities=19% Similarity=0.226 Sum_probs=141.3
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCC---CCcccc-cCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPE---GWVPVY-TDASQ 77 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~-~~~~~ 77 (192)
++..|+|+|+|.++|+||||+|.|||..+++.|+||++||+|++.|.++..|+..... +.+... .+.+.+ ....+
T Consensus 528 ~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 607 (726)
T PRK09841 528 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKG 607 (726)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCC
Confidence 4577999999999999999999999999999999999999999999888888766432 333222 233332 33457
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.+..+..|.+.+ ....+.++++.++ ++||+||||+||.....+...+.. .+|.+++|+.++.+
T Consensus 608 ~l~vl~~g~~~~~p~ell------~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la~----~ad~~llVvr~~~t 676 (726)
T PRK09841 608 GFDVITRGQVPPNPSELL------MRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGR----SVGTSLLVARFGLN 676 (726)
T ss_pred CEEEEeCCCCCCCHHHHh------CcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHH----hCCeEEEEEeCCCC
Confidence 999999987666554332 2346788888887 799999999999988766666666 49999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+...+.+.++.+++.+.++.|+|+|+++.
T Consensus 677 ~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 677 TAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 99999999999999999999999999863
No 20
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-26 Score=177.18 Aligned_cols=170 Identities=19% Similarity=0.176 Sum_probs=113.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC-CCCcccc---------CCCCcccccC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE-NSDVHQC---------PEGWVPVYTD 74 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~ 74 (192)
|+++|+|. .|||+||||+++|||..||++|+|||+||+|++. ++...++.. ...+.+. .....+....
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~-~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~ 78 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKH-DSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYE 78 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCc-chhhhhcCCCCCcHHHHHHhccccccCCCHHHheee
Confidence 46899998 6999999999999999999999999999999985 455555422 1121111 1122233334
Q ss_pred CCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-HHHHHHhhhhcCCeEEEecC
Q psy9977 75 ASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-ITVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-~~~l~~~~~~~ad~viiv~~ 153 (192)
..+|+++++.+..+....... .........++++ .+. ++|||||||+++...... ...+.. ||.+++|+.
T Consensus 79 ~~~~l~~ip~~~~~~~~~~~~-~~~~~~~~~l~~~--~~~-~~yD~viIDt~g~~~~~~~~~~l~~-----AD~viip~~ 149 (270)
T PRK13185 79 GYNGVDCVEAGGPPAGTGCGG-YVVGETVKLLKEH--HLL-DDYDVILFDVLGDVVCGGFAAPLQY-----ADYALIVTA 149 (270)
T ss_pred CCCCcEEEECCCCCCCCCccc-hhHHHHHHHHHhc--Ccc-ccCCEEEEecCCCcccCcccchhhh-----CcEEEEEec
Confidence 457999999876543321110 0000111122221 233 689999999987665432 223444 999999999
Q ss_pred CCcccHHHHHHHHHHhH----hcCCceeeEEeccCc
Q psy9977 154 PQAVSIEDVRKEITFCK----KTNIKILGLIENMSG 185 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~----~~~~~~~g~v~N~~~ 185 (192)
++..++..+.++++.++ +.++++.|+|+|+++
T Consensus 150 ~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 150 NDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred CchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 99999999998888765 346677899999965
No 21
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.95 E-value=3.9e-27 Score=179.82 Aligned_cols=171 Identities=19% Similarity=0.146 Sum_probs=118.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC-CCCccccC-------CCCcccccCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE-NSDVHQCP-------EGWVPVYTDASQ 77 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~ 77 (192)
||+|+|+ +|||+||||++.|||..||++|+||++||+|++.++...++|.. ...+.+.. ....+.......
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~~ 79 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFG 79 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCCC
Confidence 4899999 99999999999999999999999999999999988777666632 22222211 112223334467
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh-HHHH--HHHhhhhcCCeEEEecCC
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE-HITV--MECLREVQCDGAVLVTTP 154 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~-~~~~--l~~~~~~~ad~viiv~~~ 154 (192)
++++++.+..... ......+......+.+.+..+. ++|||||||+++..... .... +.. ||.+++|+.|
T Consensus 80 ~i~~i~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~~~~~~~~~al~a-----ad~vlip~~p 151 (273)
T PRK13232 80 DIKCVESGGPEPG--VGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGK-----AKEIYIVASG 151 (273)
T ss_pred CeEEEeCCCCCCC--CCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCeeECCEeccccccc-----cceEEEecCc
Confidence 8999987542211 0000111122224556666665 78999999998776422 1111 123 8999999999
Q ss_pred CcccHHHHHHHHHHhHh---cCCceeeEEeccCc
Q psy9977 155 QAVSIEDVRKEITFCKK---TNIKILGLIENMSG 185 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~ 185 (192)
+..++..+.++++.++. .++++.|+|+|+.+
T Consensus 152 ~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 152 ELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 99999988888777764 46778899999865
No 22
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.95 E-value=2.3e-26 Score=176.34 Aligned_cols=167 Identities=16% Similarity=0.156 Sum_probs=112.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccC---------CCCcccccCCCCce
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCP---------EGWVPVYTDASQTL 79 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l 79 (192)
|+|++ |||+||||++.|||.+|+++|+|||+||+|++......+.|.....+.+.. ....+.+.....++
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~l 81 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGGV 81 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEeCCCCe
Confidence 88886 999999999999999999999999999999996544333344332221111 11223344446799
Q ss_pred EEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH-HHHHHhhhhcCCeEEEecCCCccc
Q psy9977 80 AVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI-TVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~-~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
++++.+........... ........++. +..+ ++|||||||+++....... ..+.. ||.+++|+.++..+
T Consensus 82 ~lip~~~~~~~~~~~~~-~~~~~~~ll~~-l~~~--~~yD~IiIDt~~~l~~~a~~aal~~-----AD~viIp~~p~~~s 152 (290)
T CHL00072 82 DCVEAGGPPAGAGCGGY-VVGETVKLLKE-LNAF--YEYDIILFDVLGDVVCGGFAAPLNY-----ADYCIIITDNGFDA 152 (290)
T ss_pred EEEeCCCCCCccchhhc-ccHHHHHHHHH-hhcc--ccCCEEEEecCCcceechhhhhhhc-----CCEEEEEecCCHHH
Confidence 99988765433211000 00111112222 2222 4799999999887654322 33444 99999999999999
Q ss_pred HHHHHHHHHHhHhc----CCceeeEEeccCc
Q psy9977 159 IEDVRKEITFCKKT----NIKILGLIENMSG 185 (192)
Q Consensus 159 ~~~~~~~~~~l~~~----~~~~~g~v~N~~~ 185 (192)
+..+.++++.++.. +++..|+|+|+++
T Consensus 153 l~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 153 LFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 99999998877643 5678899999986
No 23
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.95 E-value=9.2e-27 Score=199.48 Aligned_cols=173 Identities=14% Similarity=0.151 Sum_probs=138.7
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCC---Cccc-ccCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEG---WVPV-YTDASQ 77 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~---~~~~-~~~~~~ 77 (192)
++..++|+|+|++||+||||+|+|||..|++.|+||++||+|+++++++.+|+.+... +.+...+ +.+. .....+
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~ 622 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAA 622 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCC
Confidence 3467899999999999999999999999999999999999999999998888866442 2222222 2222 234568
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.+..+..+.+.. ....+.+++..++ +.|||||||+||.........+... +|.+++|+.++..
T Consensus 623 ~l~~l~~g~~~~~~~~ll------~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l~~~----~D~vl~v~~~~~~ 691 (754)
T TIGR01005 623 SLPMLDSGLFPHGITELL------ASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDMRAAARL----AIIMLLVTAYDRV 691 (754)
T ss_pred CeeEecCCCCCCCHHHHh------ccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHHHHhhhh----CCeEEEEEEeCce
Confidence 999999886544432221 2245677777777 7999999999999987776666653 9999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+...+.+.++.+++.+.++.|+|+|+++.
T Consensus 692 ~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 692 VVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred eHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 99999999999999999999999999875
No 24
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.94 E-value=9e-27 Score=171.77 Aligned_cols=168 Identities=22% Similarity=0.273 Sum_probs=127.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---cc---ccCCCCcccccCCCCce
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---VH---QCPEGWVPVYTDASQTL 79 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~l 79 (192)
||+|++.|.|||+||||+++|||..|++.|++|++||+|++ ..+...||.+... +. .....|.+.......++
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpq-N~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~ 79 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQ-NLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGV 79 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcH-HHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCC
Confidence 79999999999999999999999999999999999999999 5788889887653 21 12356677777778999
Q ss_pred EEEeeccccccCCcccccCCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCccc
Q psy9977 80 AVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
+++|.|............ -......+.+.+..+. ...||+||+|+|++........+.. +|.+++|+.++..+
T Consensus 80 ~~LPfG~l~~~~~~~~~~-l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al~~-----aD~vL~V~~~Da~s 153 (243)
T PF06564_consen 80 DFLPFGQLTEAEREAFEQ-LAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQALAA-----ADLVLVVVNPDAAS 153 (243)
T ss_pred EEEcCCCCCHHHHHHHHH-hhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHHHh-----CCeEEEEeCCCHHH
Confidence 999998665543221100 1122344555556665 4789999999999998887777777 99999999999988
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
...+.+. .+. .-..+|+|+++.
T Consensus 154 ~~~L~q~--~l~----~~~~~liNq~~~ 175 (243)
T PF06564_consen 154 HARLHQR--ALP----AGHRFLINQYDP 175 (243)
T ss_pred HHHHHHh--ccc----CCcEEEEeccCc
Confidence 6555431 111 134799999986
No 25
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.94 E-value=1.6e-26 Score=183.37 Aligned_cols=176 Identities=19% Similarity=0.177 Sum_probs=123.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee-CCCCCCCCcccCCCCCC-------cccc-C---CCCccc
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI-DLCGPSVPHLLNIENSD-------VHQC-P---EGWVPV 71 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~-d~~~~~~~~~~~~~~~~-------~~~~-~---~~~~~~ 71 (192)
.++++|+|.|.|||+||||+++|||..||++|+|||+||+ |+|. +++.++|..+.. +... . ......
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 182 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYA 182 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCchhhh
Confidence 4578999999999999999999999999999999999996 9985 566777654321 1000 0 111111
Q ss_pred -ccCCCCceEEEeeccccccCCccccc------CCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhc
Q psy9977 72 -YTDASQTLAVMSIGFLLKNRDDAIIW------RGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQ 144 (192)
Q Consensus 72 -~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ 144 (192)
..+..++++++|++......+..+.. ........+++.++.++ .+|||||||+||.++....+.+.+
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~nal~A----- 256 (388)
T PRK13705 183 IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTINVVCA----- 256 (388)
T ss_pred eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHHHHHH-----
Confidence 23345899999976433211000000 00112345777777777 799999999999999888777777
Q ss_pred CCeEEEecCCCcccHHHHHHHHHHhHhc-------C-CceeeEEeccCcc
Q psy9977 145 CDGAVLVTTPQAVSIEDVRKEITFCKKT-------N-IKILGLIENMSGY 186 (192)
Q Consensus 145 ad~viiv~~~~~~~~~~~~~~~~~l~~~-------~-~~~~g~v~N~~~~ 186 (192)
||.+|+|+.++..++..+.++++.++.. + -+.+.+++|+++.
T Consensus 257 aD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (388)
T PRK13705 257 ADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN 306 (388)
T ss_pred cCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC
Confidence 9999999999999988888777666531 1 1234589998864
No 26
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.94 E-value=2.7e-26 Score=181.75 Aligned_cols=177 Identities=19% Similarity=0.180 Sum_probs=123.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee-CCCCCCCCcccCCCCCC-------ccccC-C---CCccc
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI-DLCGPSVPHLLNIENSD-------VHQCP-E---GWVPV 71 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~-d~~~~~~~~~~~~~~~~-------~~~~~-~---~~~~~ 71 (192)
+++++|+|.|.|||+||||++++||..|+++|+|||+||+ |+|. +++.++|..+.. +.... . .....
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~ 182 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEYA 182 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchHhh
Confidence 3578999999999999999999999999999999999996 9984 677777764321 11111 0 11112
Q ss_pred -ccCCCCceEEEeeccccccCCcccc-----cC-CchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhc
Q psy9977 72 -YTDASQTLAVMSIGFLLKNRDDAII-----WR-GPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQ 144 (192)
Q Consensus 72 -~~~~~~~l~~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ 144 (192)
..+..++++++|.+......+.... .. .......+++.++.+. .+|||||||+||.++....+.+.+
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~nAL~A----- 256 (387)
T PHA02519 183 IKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTINVVCA----- 256 (387)
T ss_pred eecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHHHHHH-----
Confidence 2334689999998643321100000 00 0112345777888777 799999999999999888777877
Q ss_pred CCeEEEecCCCcccHHHHHHHHHHhHh-------cC-CceeeEEeccCccC
Q psy9977 145 CDGAVLVTTPQAVSIEDVRKEITFCKK-------TN-IKILGLIENMSGYT 187 (192)
Q Consensus 145 ad~viiv~~~~~~~~~~~~~~~~~l~~-------~~-~~~~g~v~N~~~~~ 187 (192)
||.+++|+.++..++..+.++++.+.. .+ -+.+.+++|+++..
T Consensus 257 Ad~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 257 ADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred hCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 999999999999988887776655531 11 22355899988753
No 27
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.94 E-value=5.7e-26 Score=172.93 Aligned_cols=168 Identities=20% Similarity=0.185 Sum_probs=112.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC-CCCccccC---------CCCcccccCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE-NSDVHQCP---------EGWVPVYTDASQ 77 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~ 77 (192)
+|+|. +|||+||||+|.|||..||++|+||++||+|++. ++...++.. ...+.+.. ....+.+....+
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH-DSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGYG 79 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC-CcceeccCCCCCCHHHHHHhccccccCCChhheEEECCC
Confidence 58888 5999999999999999999999999999999985 455555432 12211111 122333444467
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-HHHHHHhhhhcCCeEEEecCCCc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-ITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
++++++.+............ .......+++ +. +. .+|||||||+++...... ...+.. ||.+++|+.++.
T Consensus 80 ~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~-~~yD~vIIDt~g~~~~~~~~~al~~-----aD~vlip~~p~~ 150 (267)
T cd02032 80 GVDCVEAGGPPAGAGCGGYV-VGETVKLLKE-LN-LF-EEYDVILFDVLGDVVCGGFAAPLNY-----ADYALIVTDNDF 150 (267)
T ss_pred CcEEEEcCCCCCCccccchH-HHHHHHHHHH-cc-cc-ccCCEEEEeCCCCcccccchhhhhh-----cCEEEEEecCCc
Confidence 99999877543321110000 0111122333 11 33 589999999988765442 233544 999999999999
Q ss_pred ccHHHHHHHHHHhH----hcCCceeeEEeccCcc
Q psy9977 157 VSIEDVRKEITFCK----KTNIKILGLIENMSGY 186 (192)
Q Consensus 157 ~~~~~~~~~~~~l~----~~~~~~~g~v~N~~~~ 186 (192)
.++..+.++++.++ +.+++..|+|+||++.
T Consensus 151 ~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 151 DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 99999888887665 3467778999999863
No 28
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.94 E-value=2.9e-26 Score=182.71 Aligned_cols=176 Identities=18% Similarity=0.236 Sum_probs=123.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-------ccc------cCCCCcc
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-------VHQ------CPEGWVP 70 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-------~~~------~~~~~~~ 70 (192)
..+++|+|+|.|||+||||+|+|||..|+++|+||++||+|++ ++++.++|..+.. +.. ....+.+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ-~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ-ASLSALFGYQPEFDVGENETLYGAIRYDDERRPLSE 180 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC-CCHHHHcCCCcccccccCccHHHHHhccccccCHHh
Confidence 3568999999999999999999999999999999999999997 5788888764321 100 0112222
Q ss_pred cc-cCCCCceEEEeeccccccCCccc---ccC----CchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhh
Q psy9977 71 VY-TDASQTLAVMSIGFLLKNRDDAI---IWR----GPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLRE 142 (192)
Q Consensus 71 ~~-~~~~~~l~~~~~~~~~~~~~~~~---~~~----~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~ 142 (192)
.+ .+..++++++|.+.......... ... .......+.+.+..++ ..|||||||+||..+......+..
T Consensus 181 ~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~al~a--- 256 (387)
T TIGR03453 181 IIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTLSALCA--- 256 (387)
T ss_pred hcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHHHHHHH---
Confidence 22 34567999999764322100000 000 1112345777887777 799999999999998877777776
Q ss_pred hcCCeEEEecCCCcccHHHHHHHHHH-------hHhc----CCceeeEEeccCcc
Q psy9977 143 VQCDGAVLVTTPQAVSIEDVRKEITF-------CKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 143 ~~ad~viiv~~~~~~~~~~~~~~~~~-------l~~~----~~~~~g~v~N~~~~ 186 (192)
||.+|+|+.++..++..+..+++. ++.. +....++++|+++.
T Consensus 257 --ad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 309 (387)
T TIGR03453 257 --ATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP 309 (387)
T ss_pred --cCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC
Confidence 999999999988887776655443 3332 24467899999874
No 29
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.94 E-value=3.5e-26 Score=174.21 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=112.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC-CCCccccC---------CCCcccccCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE-NSDVHQCP---------EGWVPVYTDASQ 77 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~ 77 (192)
+|+|+ +|||+||||+|.|||.+||++|+||++||+|++. ++...++.. ...+.+.. ....+.+....+
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~-~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH-DSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGYG 79 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc-cccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCCC
Confidence 58888 7999999999999999999999999999999995 455555322 22221111 223333444568
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-HHHHHHhhhhcCCeEEEecCCCc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-ITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
++++++.+........... ........++++ .+. ++|||||||+++...... ...+.. ||.+++|+.++.
T Consensus 80 ~l~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~--~~~-~~yD~ViID~~~~~~~~~~~~~l~a-----AD~vlip~~~~~ 150 (268)
T TIGR01281 80 GVDCVEAGGPPAGSGCGGY-VVGETVKLLKEH--HIL-DDYDVILFDVLGDVVCGGFATPLQY-----ADYALVVAANDF 150 (268)
T ss_pred CeEEEecCCCCCCCcccce-ehhhhHHHhhhc--ccc-ccCCEEEEecCCccccCccccchhh-----cCEEEEEecCch
Confidence 9999987754432211110 001111222221 223 689999999987665432 223444 999999999999
Q ss_pred ccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 157 VSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 157 ~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.++..+.++++.++. .++++.|+|+||++.
T Consensus 151 ~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 151 DALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 999988888776653 467788999999864
No 30
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.94 E-value=1.5e-25 Score=174.69 Aligned_cols=166 Identities=20% Similarity=0.293 Sum_probs=128.3
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-c--ccc---CCC-----Cccc
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-V--HQC---PEG-----WVPV 71 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~--~~~---~~~-----~~~~ 71 (192)
...+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.+++..++|.+... + .+. ... +...
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDA 169 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHh
Confidence 3468999999999999999999999999999999999999999998888888876532 1 111 111 1111
Q ss_pred ccCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEe
Q psy9977 72 YTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLV 151 (192)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv 151 (192)
.. ...++.+++.+.... . ......++++++.++ +.|||||||+|+.........+.. +|.+++|
T Consensus 170 ~~-~~~~l~vl~~~~~~~---~------~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~L~~-----AD~vliV 233 (322)
T TIGR03815 170 LP-RRGGLSVLSWGRAVG---A------ALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETALES-----ADLVLVV 233 (322)
T ss_pred CC-CcCCeEEEecCCCCc---C------CCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHHHHH-----CCEEEEE
Confidence 22 256888888664331 1 123566888888887 899999999999998776666665 9999999
Q ss_pred cCCCcccHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 152 TTPQAVSIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
+.++..++..+.++++.++..+.+ .++|+|+..
T Consensus 234 ~~~~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~ 266 (322)
T TIGR03815 234 VPADVRAVAAAARVCPELGRRNPD-LRLVVRGPA 266 (322)
T ss_pred cCCcHHHHHHHHHHHHHHhhhCCC-eEEEEeCCC
Confidence 999999999999999999876543 467888654
No 31
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.94 E-value=2.5e-26 Score=174.16 Aligned_cols=173 Identities=22% Similarity=0.352 Sum_probs=124.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCCCCCCCcccCCCCC---C---ccccCC---CCcccccC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLCGPSVPHLLNIENS---D---VHQCPE---GWVPVYTD 74 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~~~~~~~~~~~~~~---~---~~~~~~---~~~~~~~~ 74 (192)
+|++|+|+|.|||+||||+|.|||.+|+ ..|+|||+||+|+| .++..++|.+.. . +..... .......
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ-~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ-GSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc-chhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 5799999999999999999999999999 56799999999999 677888887665 1 111111 1111122
Q ss_pred CCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCC
Q psy9977 75 ASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTP 154 (192)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~ 154 (192)
...+++++|........ .............+++++.... .+|||||+|+||.........+.+ +|.+++++.+
T Consensus 79 ~~~~ld~ips~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~~l~~nal~a-----sd~vlIP~~~ 151 (259)
T COG1192 79 VIEGLDLIPSNIDLAEG-AEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLGVLTLNALAA-----ADHVLIPVQP 151 (259)
T ss_pred CCCCceEecCChHHHhH-HHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchhHHHHHHHHH-----cCeeEEecCc
Confidence 46788998876544320 0000001223345556555454 799999999999997777777776 9999999999
Q ss_pred CcccHHHHHHHHHHhHhcC------CceeeEEeccCcc
Q psy9977 155 QAVSIEDVRKEITFCKKTN------IKILGLIENMSGY 186 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~------~~~~g~v~N~~~~ 186 (192)
+..++..+..+++.+.... +...++++|+++.
T Consensus 152 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~ 189 (259)
T COG1192 152 EFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDS 189 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcC
Confidence 9999999988777765321 2567888898875
No 32
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.94 E-value=2.8e-26 Score=175.29 Aligned_cols=173 Identities=16% Similarity=0.131 Sum_probs=114.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCCCCCcccCCCCC-CccccC-------CCCcccccCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGPSVPHLLNIENS-DVHQCP-------EGWVPVYTDA 75 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~ 75 (192)
|+++|+|+ +|||+||||++.|||..|++ .|+||++||+|++.+....++|.... .+.+.. ....+...+.
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 36899999 89999999999999999998 69999999999997655544564432 222211 1122334445
Q ss_pred CCceEEEeeccccccCCcccccCCchhH--HHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecC
Q psy9977 76 SQTLAVMSIGFLLKNRDDAIIWRGPKKT--AMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~ 153 (192)
.++++++|++...... ...+.... ..+.+.++.+. ++|||||||+++....... ...+.+..||.+++|+.
T Consensus 80 ~~~l~~ipa~~~~~~~----~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~~~al--~~~~~~~aad~viIp~~ 152 (275)
T PRK13233 80 FKDIRCVESGGPEPGV----GCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVVCGGF--AMPIRDGKAQEVYIVAS 152 (275)
T ss_pred CCCcEEEECCCCCCCC----CCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCceeeccc--cccchhccCceEEEecc
Confidence 6789999976433210 00111111 12445555555 7899999999654432221 11000012999999999
Q ss_pred CCcccHHHHHHHHHHh----HhcCCceeeEEeccCc
Q psy9977 154 PQAVSIEDVRKEITFC----KKTNIKILGLIENMSG 185 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l----~~~~~~~~g~v~N~~~ 185 (192)
++..++..+.++++.+ ++.++++.|+|+|+..
T Consensus 153 p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~ 188 (275)
T PRK13233 153 GEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN 188 (275)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC
Confidence 9999999988887665 3557889999999753
No 33
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.94 E-value=6.5e-26 Score=172.86 Aligned_cols=173 Identities=21% Similarity=0.198 Sum_probs=111.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCC-CCccccCC-------CCcccccCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN-SDVHQCPE-------GWVPVYTDASQ 77 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~ 77 (192)
||+|+|+ +|||+||||+++|||..|+++|+||++||+|++.+....+.+... ..+.+... .+.+...+...
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFG 79 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecCC
Confidence 5889999 699999999999999999999999999999999665444443221 11111110 23334444567
Q ss_pred ceEEEeeccccccCCcccccCCch-hHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPK-KTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
++++++.+........ ...... ....++. +..+. ++|||||||+++............ ...+|.+++|+.|+.
T Consensus 80 ~l~~ip~~~~~~~~~~--~~~~~~~~~~~l~~-l~~~~-~~yD~viID~~g~~~~~~~~~~~~--~~aaD~vlip~~p~~ 153 (270)
T cd02040 80 GIKCVESGGPEPGVGC--AGRGVITAINLLEE-LGAYE-DDLDFVIYDVLGDVVCGGFAMPIR--EGKAQEIYIVTSGEM 153 (270)
T ss_pred CeEEEeCCCCCCCCCC--cCcchhhHHHHHHh-cCccc-cCCCEEEEecccCcccCCcccccc--cccccEEEEEecCch
Confidence 8999997654322110 000011 1112222 34444 689999999986553222111000 002999999999999
Q ss_pred ccHHHHHHHHHHhHh----cCCceeeEEeccCc
Q psy9977 157 VSIEDVRKEITFCKK----TNIKILGLIENMSG 185 (192)
Q Consensus 157 ~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~ 185 (192)
.++..+.++++.+.+ .+.++.++|.|+..
T Consensus 154 ~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~ 186 (270)
T cd02040 154 MALYAANNICKGILKYAKSGGVRLGGLICNSRN 186 (270)
T ss_pred HHHHHHHHHHHHHHHhCccCCCceEEEEEecCC
Confidence 999988887766653 35778888888743
No 34
>PRK10037 cell division protein; Provisional
Probab=99.94 E-value=6.1e-26 Score=171.11 Aligned_cols=166 Identities=15% Similarity=0.193 Sum_probs=108.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---ccc-c--CCCCcccccCCCCce
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---VHQ-C--PEGWVPVYTDASQTL 79 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~~~-~--~~~~~~~~~~~~~~l 79 (192)
|++|+|.|.|||+||||+++|||..|+++|+||++||+|++. .+...||..... +.. . ...+.+.......++
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQL 79 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccccCCe
Confidence 579999999999999999999999999999999999999984 556666654321 110 0 112333333335789
Q ss_pred EEEeeccccccCCcccccCC-chhHHHHHHHHHhhcC-CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 80 AVMSIGFLLKNRDDAIIWRG-PKKTAMIRQIINDVCW-KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~-~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++.+..... +...... ......+.+.+..++. .+|||||||+||..+......+.. ||.+++|+.++..
T Consensus 80 ~iip~~~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~al~a-----aD~vlvpv~~~~~ 152 (250)
T PRK10037 80 DLLPFGQLSIE--EQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLLSL-----CDHSLAIVNVDAN 152 (250)
T ss_pred EEEcCCCCCHH--HHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHHHHHh-----CCEEEEEcCcCHH
Confidence 99987521111 0000000 0011235566666641 489999999999998877666666 9999999999865
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
+. ++..+...-+...+++|+++
T Consensus 153 ~~------i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 153 CH------IRLHQQALPAGAHILINDLR 174 (250)
T ss_pred HH------HhhhccccCCCeEEEEecCC
Confidence 42 23332221223457888875
No 35
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.93 E-value=2.7e-25 Score=159.68 Aligned_cols=154 Identities=27% Similarity=0.405 Sum_probs=108.6
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
+|+|+|+|||+||||+|+|||..| +||++||+|++.|+++.+|+.+.............. ......+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKA---VIDPELCISCGLC 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccccceecCCce---EEchhhhccccch
Confidence 489999999999999999999999 899999999999999999998765432211000000 0000011110000
Q ss_pred cccCCcccccCCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHH
Q psy9977 88 LKNRDDAIIWRGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEI 166 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~ 166 (192)
......+.+.+..+. .+.|||||+|+||+........+.. +|.+++|+.++..++..+.+++
T Consensus 74 ------------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l~~-----aD~vliv~~~~~~~~~~~~~~~ 136 (179)
T cd03110 74 ------------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLTG-----ADAALLVTEPTPSGLHDLERAV 136 (179)
T ss_pred ------------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHHHc-----CCEEEEEecCCcccHHHHHHHH
Confidence 011122333322111 2699999999999988765555544 9999999999999999999999
Q ss_pred HHhHhcCCceeeEEeccCcc
Q psy9977 167 TFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 167 ~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+++.+.+ .++|+||++.
T Consensus 137 ~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 137 ELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred HHHHHcCCC-EEEEEeCCCC
Confidence 999988877 4799999875
No 36
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.93 E-value=6.5e-26 Score=173.18 Aligned_cols=173 Identities=18% Similarity=0.139 Sum_probs=108.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC-CCCccccC------CCCcccccCCCCc
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE-NSDVHQCP------EGWVPVYTDASQT 78 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~ 78 (192)
||+|+|+ +|||+||||++.|||..||++|+|||+||+|++......+++.. ...+.+.. ......+.+..++
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 4799999 79999999999999999999999999999999977655554322 22222211 1122234444678
Q ss_pred eEEEeeccccccCCcccccCCchhH-HHHHHHHHhhc-CCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc
Q psy9977 79 LAVMSIGFLLKNRDDAIIWRGPKKT-AMIRQIINDVC-WKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
+++++.+......... ....... ..+++ +...+ .++|||||||+++...........++ ..||.+++|+.++.
T Consensus 80 l~~ip~~~~~~~~~~~--~~~~~~~~~~~~~-l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~--~aad~vlIp~~~e~ 154 (274)
T PRK13235 80 TRCTESGGPEPGVGCA--GRGIITSVNLLEQ-LGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRD--GKAEEIYIVCSGEM 154 (274)
T ss_pred CEEEeCCCCCCCCCCC--CCceeehhHHHHh-hchhhccCCCCEEEEECCCCCccCCccccccc--ccccEEEEEecCch
Confidence 9998765322210000 0000000 12222 22110 15799999999766532221111000 02899999999999
Q ss_pred ccHHHHHHHHHHhH----hcCCceeeEEeccC
Q psy9977 157 VSIEDVRKEITFCK----KTNIKILGLIENMS 184 (192)
Q Consensus 157 ~~~~~~~~~~~~l~----~~~~~~~g~v~N~~ 184 (192)
.++..+.++++.++ +.++++.|+|+|+.
T Consensus 155 ~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 155 MAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 99999888877654 34677789999964
No 37
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.93 E-value=1.2e-25 Score=172.94 Aligned_cols=170 Identities=19% Similarity=0.178 Sum_probs=115.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-Ccccc--------CCCCcccccCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQC--------PEGWVPVYTDA 75 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~ 75 (192)
+|++|+|+ +|||+||||+++|||..|+++|+|||+||+|++.++...+++.... .+.+. .....+.+.+.
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheec
Confidence 45899997 9999999999999999999999999999999998877655543322 21111 11233344455
Q ss_pred CCceEEEeeccccccCCcccccCCchhHHHHH-HHHHhhc-CCCCcEEEEeCCCCCChhHH-HHHH-HhhhhcCCeEEEe
Q psy9977 76 SQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIR-QIINDVC-WKDVDYLIIDTPPGTSDEHI-TVME-CLREVQCDGAVLV 151 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~-~~~~D~IiiD~~~~~~~~~~-~~l~-~~~~~~ad~viiv 151 (192)
..|++++|++...... ........++ ..++.+. ..+|||||||+++....... ..+. . .||.+|+|
T Consensus 82 ~~gl~lipa~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~----aAD~vIIP 151 (295)
T PRK13234 82 YKGIKCVESGGPEPGV------GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIREN----KAQEIYIV 151 (295)
T ss_pred CCCeEEEECCCCCCCC------CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccc----cCceEEEe
Confidence 6899999976432210 1111112233 2444332 25899999999755432221 1111 1 29999999
Q ss_pred cCCCcccHHHHHHHHHHhHh----cCCceeeEEeccCc
Q psy9977 152 TTPQAVSIEDVRKEITFCKK----TNIKILGLIENMSG 185 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~ 185 (192)
+.++..++..+.++++.+++ .++++.|+|+|+.+
T Consensus 152 v~pe~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~r 189 (295)
T PRK13234 152 MSGEMMALYAANNIAKGILKYANSGGVRLGGLICNERQ 189 (295)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 99999999999988877764 35778899999754
No 38
>PHA02518 ParA-like protein; Provisional
Probab=99.93 E-value=4.2e-25 Score=162.56 Aligned_cols=139 Identities=25% Similarity=0.370 Sum_probs=103.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
++|+|+|.|||+||||+|+|||.+|+++|++|++||+|++++. ..+++..... . ..++..
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~-~~~~~~~~~~---------------~---~~i~~~- 60 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSS-TDWAEAREEG---------------E---PLIPVV- 60 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCh-HHHHHhcccC---------------C---CCCchh-
Confidence 5899999999999999999999999999999999999999643 3333211100 0 011100
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHH
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEI 166 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~ 166 (192)
+ ....+.+.+..+. ..|||||||+||+.+......+.. +|.+|+|+.|+..++..+.+++
T Consensus 61 ----~----------~~~~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~l~~-----aD~viip~~ps~~~~~~~~~~~ 120 (211)
T PHA02518 61 ----R----------MGKSIRADLPKVA-SGYDYVVVDGAPQDSELARAALRI-----ADMVLIPVQPSPFDIWAAPDLV 120 (211)
T ss_pred ----h----------ccHHHHHHHHHHh-ccCCEEEEeCCCCccHHHHHHHHH-----CCEEEEEeCCChhhHHHHHHHH
Confidence 0 0122444555555 799999999999988777666766 9999999999999999888887
Q ss_pred HHhHh-----cCCceeeEEeccCc
Q psy9977 167 TFCKK-----TNIKILGLIENMSG 185 (192)
Q Consensus 167 ~~l~~-----~~~~~~g~v~N~~~ 185 (192)
+.++. .+.+..+++.|+++
T Consensus 121 ~~~~~~~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 121 ELIKARQEVTDGLPKFAFIISRAI 144 (211)
T ss_pred HHHHHHHhhCCCCceEEEEEeccC
Confidence 77653 25667788999875
No 39
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.93 E-value=6.6e-26 Score=164.78 Aligned_cols=158 Identities=32% Similarity=0.478 Sum_probs=112.3
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecccc
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLL 88 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (192)
|+|+|+|||+||||+|++||.+|+++|++|+++|+|++.+....+++..+. ...+....... ..-+......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~ 72 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDI----LREGLENANAI----LKNFESQDIY 72 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHH----HTTSSHGHHCH----HESCCHHHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhh----ccccceehhhh----hhccchhhhh
Confidence 789999999999999999999999999999999999998766655544000 00000000000 0000000000
Q ss_pred ccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHH
Q psy9977 89 KNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITF 168 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~ 168 (192)
.. . .. .....++++++.+.+..||+||||+||+........+.. +|.+|+|+.++..++..+.++++.
T Consensus 73 ~~-~-----~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l~~-----ad~viv~~~~~~~~i~~~~~~~~~ 140 (195)
T PF01656_consen 73 QG-E-----EY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNALAA-----ADYVIVPIEPDPSSIEGAERLIEL 140 (195)
T ss_dssp HH-C-----HC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHHHT-----SSEEEEEEESSHHHHHHHHHHHHH
T ss_pred hh-h-----hh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHHHHh-----CceeeeecCCcHHHHHHHHHHHHH
Confidence 00 0 01 345667888887653459999999999999887666665 999999999999999999999999
Q ss_pred hHhcC--CceeeEEeccCcc
Q psy9977 169 CKKTN--IKILGLIENMSGY 186 (192)
Q Consensus 169 l~~~~--~~~~g~v~N~~~~ 186 (192)
+++.+ .+..++|+||++.
T Consensus 141 l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 141 LKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp HHHHTHTEEEEEEEEEEETS
T ss_pred HHHhccccceEEEEEeeeCC
Confidence 99877 5688999999854
No 40
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.93 E-value=3.3e-25 Score=169.72 Aligned_cols=168 Identities=18% Similarity=0.125 Sum_probs=107.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccC-------CCCcccccCCCCc
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCP-------EGWVPVYTDASQT 78 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 78 (192)
|++|+|+ +|||+||||+|.|||..||++|+||++||+|++.+....+.+.....+.+.. ....+.+....++
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~~~~~ 79 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYEGFNG 79 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheeeCCCC
Confidence 6889999 7999999999999999999999999999999996544433232222222211 1223344445689
Q ss_pred eEEEeeccccccCCcccccCCchhH--HHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH---HHHHhhhhcCCeEEEecC
Q psy9977 79 LAVMSIGFLLKNRDDAIIWRGPKKT--AMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT---VMECLREVQCDGAVLVTT 153 (192)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~---~l~~~~~~~ad~viiv~~ 153 (192)
+++++.+....... ..+.... ..+.+.+..+.+.+|||||||+++........ .+.. ||.+++|+.
T Consensus 80 l~lipa~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~a-----AD~vlIp~~ 150 (279)
T PRK13230 80 IYCVESGGPEPGYG----CAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFAMPLQKGL-----ADDVYIVTT 150 (279)
T ss_pred cEEEECCCCCCCCC----cCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCccccccccc-----cceEEEecc
Confidence 99998764332210 0001110 01112222333247999999998755322111 1223 899999999
Q ss_pred CCcccHHHHHHHHHHhHh----cCCceeeEEecc
Q psy9977 154 PQAVSIEDVRKEITFCKK----TNIKILGLIENM 183 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~----~~~~~~g~v~N~ 183 (192)
|+..++..+.++++.++. .+.++.|++.|.
T Consensus 151 p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~ 184 (279)
T PRK13230 151 CDPMAIYAANNICKGIKRFAKRGKSALGGIIYNG 184 (279)
T ss_pred chHHHHHHHHHHHHHHHHHhhcCCCcceEEEEec
Confidence 999999999887776642 356667777663
No 41
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.93 E-value=8.4e-25 Score=156.96 Aligned_cols=127 Identities=37% Similarity=0.578 Sum_probs=102.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
+|+|+|+|||+||||+|.+||.+++++|++|++||+|++.+++..+++.+.... ..
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~---------------~~--------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVV---------------YT--------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCC---------------cc---------
Confidence 589999999999999999999999999999999999998777665544321100 00
Q ss_pred cccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHH
Q psy9977 88 LKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEIT 167 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~ 167 (192)
+.+++ . . ||||||+||.........+.. +|.+++|+.++..++..+.++++
T Consensus 57 ------------------~~~~~---~-~--d~viiD~p~~~~~~~~~~l~~-----ad~viiv~~~~~~s~~~~~~~~~ 107 (179)
T cd02036 57 ------------------LHDVL---A-G--DYILIDSPAGIERGFITAIAP-----ADEALLVTTPEISSLRDADRVKG 107 (179)
T ss_pred ------------------hhhcc---c-C--CEEEEECCCCCcHHHHHHHHh-----CCcEEEEeCCCcchHHHHHHHHH
Confidence 00011 0 1 999999999988776666654 99999999999999999999999
Q ss_pred HhHhcCCceeeEEeccCccC
Q psy9977 168 FCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 168 ~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++..+.+..++|+|+++..
T Consensus 108 ~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 108 LLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred HHHHcCCceEEEEEeCCccc
Confidence 99988888899999998764
No 42
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.93 E-value=1.4e-24 Score=161.23 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=103.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
|++|+|.|.|||+||||++.+||..|+++|++|++||+|++++ +..+++..... ..+. .....
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s-~~~w~~~~~~~-----~~~~-------~~~~~---- 63 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP-LTRWKENALRS-----NTWD-------PACEV---- 63 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC-HHHHHHhhccc-----cCCC-------cccee----
Confidence 5899999999999999999999999999999999999999964 33333221110 0000 00000
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~ 165 (192)
.. ......+++.++.+..+.|||||||+||..+......+.. +|.+++|+.|+..++..+.++
T Consensus 64 ---~~---------~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~al~~-----aD~vliP~~ps~~d~~~~~~~ 126 (231)
T PRK13849 64 ---YA---------ADELPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIAS-----SNLLLIPTMLTPLDIDEALST 126 (231)
T ss_pred ---cC---------CCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHH-----CCEEEEeccCcHHHHHHHHHH
Confidence 00 0112345555555533589999999999998777666666 999999999999999888888
Q ss_pred HHHhHh------cCCceeeEEeccCc
Q psy9977 166 ITFCKK------TNIKILGLIENMSG 185 (192)
Q Consensus 166 ~~~l~~------~~~~~~g~v~N~~~ 185 (192)
++.+.+ .+++. .+++|+++
T Consensus 127 ~~~v~~~~~~~~~~l~~-~iv~~~~~ 151 (231)
T PRK13849 127 YRYVIELLLSENLAIPT-AILRQRVP 151 (231)
T ss_pred HHHHHHHHHHhCCCCCe-EEEEEecc
Confidence 766542 35544 59999975
No 43
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.93 E-value=2.4e-25 Score=169.22 Aligned_cols=171 Identities=19% Similarity=0.171 Sum_probs=113.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccC-----CCCcccccCCCCceE
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCP-----EGWVPVYTDASQTLA 80 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~ 80 (192)
||+|+|. +|||+||||+++|||..|++.| |||+||+|++......+++.....+.... ..+.........+++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGIL 79 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeE
Confidence 6899999 6999999999999999999999 99999999996554444443332221111 122333444567888
Q ss_pred EEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH-HH-HHhhhhcCCeEEEecCCCccc
Q psy9977 81 VMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT-VM-ECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~-~l-~~~~~~~ad~viiv~~~~~~~ 158 (192)
+++.+....... ...........+.+.+..++ ++|||||||+++........ .+ .. .+|.+++|+.|+..+
T Consensus 80 ~i~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~~~~~~~~~~~~~----aaD~vlip~~p~~~s 152 (264)
T PRK13231 80 CVESGGPEPGVG--CAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDVVCGGFSVPLRED----YADEVYIVTSGEYMS 152 (264)
T ss_pred EEEcCCCCCCCC--CcCceeeehhhhHHhhcccc-CCCCEEEEecCCCceEcccccccccc----ccceeEEEecCchhH
Confidence 887653221100 00000001112334445555 78999999998755322111 11 11 399999999999999
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
+..+.++++.++..+.+..+++.|+.+
T Consensus 153 i~~~~~~~~~i~~~~~~~~~vv~~~~~ 179 (264)
T PRK13231 153 LYAANNIARGIKKLKGKLGGIICNCRG 179 (264)
T ss_pred HHHHHHHHHHHHHcCCcceEEEEcCCC
Confidence 999999999988776666788888754
No 44
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.92 E-value=2.2e-24 Score=164.81 Aligned_cols=168 Identities=19% Similarity=0.197 Sum_probs=108.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-CccccC-------CCCcccccCCCCc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQCP-------EGWVPVYTDASQT 78 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~ 78 (192)
++|+|+ +|||+||||+|.|||..|+++|+||++||+|++.+....+.+.... .+.+.. ....+...+...+
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~ 79 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFGG 79 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCCC
Confidence 478998 5999999999999999999999999999999997665444443222 111111 1223334445678
Q ss_pred eEEEeeccccccCCcccccCCchhH---HHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH-HHHHhhhhcCCeEEEecCC
Q psy9977 79 LAVMSIGFLLKNRDDAIIWRGPKKT---AMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT-VMECLREVQCDGAVLVTTP 154 (192)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~-~l~~~~~~~ad~viiv~~~ 154 (192)
+++++.+....... . .+.... ..++. +..+. ++|||||||+++........ .+.. ..+|.+++|+.+
T Consensus 80 l~~i~~~~~~~~~~--~--~~~~~~~~~~~~~~-l~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~---~aAD~viip~~p 150 (275)
T TIGR01287 80 IRCVESGGPEPGVG--C--AGRGVITAINLLEE-LGAYE-DDLDFVFYDVLGDVVCGGFAMPIRE---GKAQEIYIVTSG 150 (275)
T ss_pred EEEEeCCCCCccCC--C--ccchhhhHHHHHHH-hhhhh-ccCCEEEEeccCcceecceeecccc---ccccEEEEEecc
Confidence 99998754332210 0 111111 12333 34455 68999999997654321111 0110 028999999999
Q ss_pred CcccHHHHHHHHHHhH----hcCCceeeEEeccC
Q psy9977 155 QAVSIEDVRKEITFCK----KTNIKILGLIENMS 184 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~----~~~~~~~g~v~N~~ 184 (192)
+..++..+.++++.++ +.+.++.++|.|+.
T Consensus 151 ~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~ 184 (275)
T TIGR01287 151 EMMALYAANNICKGILKYAKSGGVRLGGLICNSR 184 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCC
Confidence 9999999888776543 24667778888874
No 45
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.92 E-value=1.4e-24 Score=163.79 Aligned_cols=179 Identities=21% Similarity=0.232 Sum_probs=116.0
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-------ccccC---CCCccccc-CCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-------VHQCP---EGWVPVYT-DASQ 77 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~-~~~~ 77 (192)
+.++++|||+||||+++++|..++++|+||++||+|++ ++++..|+.+... ..... ........ ....
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 67788999999999999999999999999999999997 7999998876210 00000 00000000 0000
Q ss_pred ceEEEeecc----ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHH--------HHHhhhhcC
Q psy9977 78 TLAVMSIGF----LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITV--------MECLREVQC 145 (192)
Q Consensus 78 ~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~--------l~~~~~~~a 145 (192)
.++.+.... ...........++....-.+.++.+.+++.+||+||+|+||......... ...+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~ 160 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPER 160 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 011111000 00000000111344444555666666654689999999999643221111 112334456
Q ss_pred CeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 146 DGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 146 d~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
+.+++|+.++..++.++.+.++.++..++++.|+|+|++...+
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~ 203 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPED 203 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccc
Confidence 7899999999999999999999999999999999999998743
No 46
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.92 E-value=1.5e-24 Score=160.13 Aligned_cols=170 Identities=20% Similarity=0.267 Sum_probs=113.9
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC-------CCCcccCCCCCCc--cccCCCCcc--cc--cCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP-------SVPHLLNIENSDV--HQCPEGWVP--VY--TDA 75 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~-------~~~~~~~~~~~~~--~~~~~~~~~--~~--~~~ 75 (192)
|.++++|||+||||++.++|..++++|+||+++|+|++.+ ++...++..+... ......... .. ...
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4688899999999999999999999999999999999973 4444444211110 000000000 00 000
Q ss_pred CCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC
Q psy9977 76 SQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ 155 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~ 155 (192)
..+...++.+...+ ++...-.+.++++.+++.+||+||+|+||............+.+..+|.+++|+.++
T Consensus 81 ~~~~~~~~~~~~~p---------~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~ 151 (217)
T cd02035 81 GEGGLMLELAAALP---------GIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE 151 (217)
T ss_pred chhhhHHhHhccCC---------CHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC
Confidence 12222333232222 223333477788777733499999999997544433334444333458999999999
Q ss_pred cccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 156 AVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..++..+.+.++.+++.+.+..|+|+|++...
T Consensus 152 ~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 152 KLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 99999999999999999999999999998753
No 47
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.91 E-value=3.4e-23 Score=149.37 Aligned_cols=168 Identities=21% Similarity=0.331 Sum_probs=123.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCC-CeEEEEeeCCCCCCCCcccCCCCCC--ccc-------c---CCC-------
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKG-FKVGILDIDLCGPSVPHLLNIENSD--VHQ-------C---PEG------- 67 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g-~~vlliD~d~~~~~~~~~~~~~~~~--~~~-------~---~~~------- 67 (192)
+|+|. +|||+||||+|+.|+..+.++| ++||+||+|+ ..+++.-+|.+... +.. . ..+
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 45555 9999999999999888887755 9999999999 58899999988741 000 0 000
Q ss_pred ---Cc--c---cccCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHH
Q psy9977 68 ---WV--P---VYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMEC 139 (192)
Q Consensus 68 ---~~--~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~ 139 (192)
+. + -+....++++++--|...... +... -.-...++++++++.-.+||+||+||-++++.........
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~G-eGC~---Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~ 155 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGG-EGCA---CPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEG 155 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCC-Cccc---chHHHHHHHHHHHHhcccCcEEEEecccchhhhccccccC
Confidence 00 0 011123345555444332111 1110 1335678999998884569999999999999888777777
Q ss_pred hhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 140 LREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 140 ~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+|.+++|++|+..++..+.++.+.-++.+++.+++|+||++-
T Consensus 156 -----vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 156 -----VDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred -----CCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 999999999999999999999999999999999999999973
No 48
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.91 E-value=8.2e-23 Score=157.96 Aligned_cols=169 Identities=18% Similarity=0.277 Sum_probs=112.2
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCC---------Cccccc
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEG---------WVPVYT 73 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~ 73 (192)
+..++|+|+ +|||+||||+++|||.+|+++|+||++||+|++.++++.+||..... +.+.... ..+...
T Consensus 29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~ 107 (329)
T cd02033 29 KKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCF 107 (329)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEE
Confidence 467899998 59999999999999999999999999999999999999999865332 2111100 011111
Q ss_pred CCCCceEEEeeccccccCCcccccCCchhH--HHHHHHHHhh---cCCCCcEEEEeCCCCCCh--hHHHHHHHhhhhcCC
Q psy9977 74 DASQTLAVMSIGFLLKNRDDAIIWRGPKKT--AMIRQIINDV---CWKDVDYLIIDTPPGTSD--EHITVMECLREVQCD 146 (192)
Q Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~l---~~~~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad 146 (192)
. ..|+.++..+ ....+.+..-. ....++++.+ .| .|||||+|+++...+ ........+ +|
T Consensus 108 ~-~~gv~~~~~g-------~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~~~~----ad 174 (329)
T cd02033 108 K-RDGVFAMELG-------GPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIARDM----AQ 174 (329)
T ss_pred E-eCCEEEecCC-------CCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhhhcC----Cc
Confidence 1 2355554321 12223332221 1122344443 44 799999999876642 222222232 88
Q ss_pred eEEEecCCCcccHHH---HHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 147 GAVLVTTPQAVSIED---VRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 147 ~viiv~~~~~~~~~~---~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
.+++|+.++..++.. +.+.++.+++. +.++.|+|+||.+-
T Consensus 175 ~VIVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~ 219 (329)
T cd02033 175 KVIVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG 219 (329)
T ss_pred eEEEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC
Confidence 999999999999965 55666777766 46789999999863
No 49
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.91 E-value=2.5e-23 Score=159.87 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=100.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCC-CCccccCC---------CCccccc-CC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN-SDVHQCPE---------GWVPVYT-DA 75 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~-~~ 75 (192)
|+|+|+ +|||+||||+|+|||++|+++|+||++||+|++.++...+++... ..+.+... ...+... ..
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 589999 899999999999999999999999999999999888777766322 23222211 1111111 11
Q ss_pred CCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhc--CCCCcEEEEeCCCCCCh--h-HHHHHHHhhhhcCCeEEE
Q psy9977 76 SQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVC--WKDVDYLIIDTPPGTSD--E-HITVMECLREVQCDGAVL 150 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~~D~IiiD~~~~~~~--~-~~~~l~~~~~~~ad~vii 150 (192)
..+............+....-..+. ......+.++.++ ..+|||||||+++.... . ....+.. ||.+++
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~-~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~~~~~a~~~-----Ad~viV 153 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGR-GIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGFATPLARSL-----AEEVIV 153 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcc-hhhHHHHHHHHhhhhcccCCEEEEecCCCccccccccchhhhh-----CCeEEE
Confidence 1111000000001111000000000 1111123333332 14899999999764411 0 1112223 999999
Q ss_pred ecCCCcccHHHHHHHHH---HhHhc--CCceeeEEeccCcc
Q psy9977 151 VTTPQAVSIEDVRKEIT---FCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 151 v~~~~~~~~~~~~~~~~---~l~~~--~~~~~g~v~N~~~~ 186 (192)
|+.++..++..+.++.+ .+++. ..++.|+|+||++.
T Consensus 154 vt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 154 IGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG 194 (296)
T ss_pred EecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC
Confidence 99999998876665555 55554 37789999999863
No 50
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.91 E-value=6e-23 Score=134.97 Aligned_cols=102 Identities=26% Similarity=0.452 Sum_probs=92.1
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
+|+++|.|||+||||++.+||.++++. |++|+++|+|++.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 488999999999999999999999997 999999999999642
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHH
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEI 166 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~ 166 (192)
||||+|+||+........+.. +|.+++|+.++..++..+.+++
T Consensus 44 --------------------------------D~IIiDtpp~~~~~~~~~l~~-----aD~vlvvv~~~~~s~~~~~~~~ 86 (106)
T cd03111 44 --------------------------------DYVVVDLGRSLDEVSLAALDQ-----ADRVFLVTQQDLPSIRNAKRLL 86 (106)
T ss_pred --------------------------------CEEEEeCCCCcCHHHHHHHHH-----cCeEEEEecCChHHHHHHHHHH
Confidence 999999999998877666665 9999999999999999999999
Q ss_pred HHhHhcCCc---eeeEEecc
Q psy9977 167 TFCKKTNIK---ILGLIENM 183 (192)
Q Consensus 167 ~~l~~~~~~---~~g~v~N~ 183 (192)
+.+++.+.+ ...+|+||
T Consensus 87 ~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 87 ELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHcCCCCcCceEEEecC
Confidence 999877643 77899997
No 51
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.90 E-value=6.1e-23 Score=150.98 Aligned_cols=172 Identities=27% Similarity=0.420 Sum_probs=118.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccC-----------
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTD----------- 74 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 74 (192)
|+.|+|+|+|||+||||+|++||..|+. .++++++|+|...|+++.+++.+.....+......+.+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~-~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGD-KYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhcc-ccceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 5789999999999999999999999986 5799999999999999999988866322211110000000
Q ss_pred --CCCceE--------E----------------------E--eeccccccCCc---ccc----cCCc-hhHHHHHHHHHh
Q psy9977 75 --ASQTLA--------V----------------------M--SIGFLLKNRDD---AII----WRGP-KKTAMIRQIIND 112 (192)
Q Consensus 75 --~~~~l~--------~----------------------~--~~~~~~~~~~~---~~~----~~~~-~~~~~l~~~l~~ 112 (192)
....+. + - ..|.......+ .+. ..+. .....+..+.+.
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 000000 0 0 00100000000 000 0122 223344444444
Q ss_pred hcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 113 VCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 113 l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
.+ +..|++|||+||+.+.+....+.. +|.+++|+.|.+.++++++++++..++.+++ .++|+||++
T Consensus 160 a~-E~~~~~IIDsaaG~gCpVi~sl~~-----aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~ 225 (284)
T COG1149 160 AK-ELADLLIIDSAAGTGCPVIASLKG-----ADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYN 225 (284)
T ss_pred hh-hhcceeEEecCCCCCChHHHhhcc-----CCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCC
Confidence 44 447999999999999998888877 9999999999999999999999999999998 469999994
No 52
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.88 E-value=7e-22 Score=143.85 Aligned_cols=146 Identities=18% Similarity=0.322 Sum_probs=106.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
|++|.|.|.|||+||||.+..||-.|+++|.+|.+||+|+++|...+ ....... ..| ..++.+..
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W-~~~a~~~-----~~~-------~~~~~V~~-- 65 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW-AENAQRP-----GAW-------PDRIEVYE-- 65 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH-HHhcccc-----CCC-------CCCeeEEe--
Confidence 68999999999999999999999999999999999999999874322 1100000 000 11222211
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~ 165 (192)
......+++.++......|||||+|+.++.+......+.. +|.+++|..++.....++.++
T Consensus 66 --------------~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~aia~-----sDlVlIP~~~s~lD~~eA~~t 126 (231)
T PF07015_consen 66 --------------ADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYAIAR-----SDLVLIPMQPSQLDADEAAKT 126 (231)
T ss_pred --------------ccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHHHH-----CCEEEECCCCChHHHHHHHHH
Confidence 0122346666665543569999999998887776666666 999999999999999999988
Q ss_pred HHHhHhc------CCceeeEEeccCcc
Q psy9977 166 ITFCKKT------NIKILGLIENMSGY 186 (192)
Q Consensus 166 ~~~l~~~------~~~~~g~v~N~~~~ 186 (192)
++.+.+. .+| ..++++|+..
T Consensus 127 ~~~v~~~~~~~~~~ip-~~Vl~Tr~~~ 152 (231)
T PF07015_consen 127 FKWVRRLEKAERRDIP-AAVLFTRVPA 152 (231)
T ss_pred HHHHHHHHHhhCCCCC-eeEEEecCCc
Confidence 8877642 344 3688888763
No 53
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.88 E-value=1.4e-21 Score=134.72 Aligned_cols=108 Identities=38% Similarity=0.521 Sum_probs=94.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
+|+|+++|||+||||++.++|..++++|++|+++|+|++.+.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 48999999999999999999999999999999999998765331
Q ss_pred cccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHH
Q psy9977 88 LKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEIT 167 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~ 167 (192)
||+||+|+|+..+......+.. +|.+++|+.++..++..+.+.++
T Consensus 45 ------------------------------yd~VIiD~p~~~~~~~~~~l~~-----aD~vviv~~~~~~s~~~~~~~l~ 89 (139)
T cd02038 45 ------------------------------YDYIIIDTGAGISDNVLDFFLA-----ADEVIVVTTPEPTSITDAYALIK 89 (139)
T ss_pred ------------------------------CCEEEEECCCCCCHHHHHHHHh-----CCeEEEEcCCChhHHHHHHHHHH
Confidence 8999999999988777666665 99999999999999999999998
Q ss_pred HhHhc-CCceeeEEeccCcc
Q psy9977 168 FCKKT-NIKILGLIENMSGY 186 (192)
Q Consensus 168 ~l~~~-~~~~~g~v~N~~~~ 186 (192)
.+.+. +....++|+|+++.
T Consensus 90 ~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 90 KLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHhcCCCCEEEEEeCCCC
Confidence 88643 44567899999864
No 54
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.88 E-value=1.5e-21 Score=128.06 Aligned_cols=99 Identities=31% Similarity=0.550 Sum_probs=87.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
+|+|.|.|||+||||++.+||..++++|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 489999999999999999999999999999999999977
Q ss_pred cccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHH
Q psy9977 88 LKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEIT 167 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~ 167 (192)
||+||+|+||..+......+.. +|.+++|+.++..++..+.++++
T Consensus 40 ------------------------------~d~viiD~p~~~~~~~~~~l~~-----ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 40 ------------------------------YDYIIIDTPPSLGLLTRNALAA-----ADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred ------------------------------CCEEEEeCcCCCCHHHHHHHHH-----CCEEEEeccCCHHHHHHHHHHHH
Confidence 8999999999998877666666 99999999999999999999987
Q ss_pred ---HhH--hcCCceeeEEec
Q psy9977 168 ---FCK--KTNIKILGLIEN 182 (192)
Q Consensus 168 ---~l~--~~~~~~~g~v~N 182 (192)
..+ ....+..++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~vv~n 104 (104)
T cd02042 85 TLILEDRLNPDLDILGILPT 104 (104)
T ss_pred HHHHHHhcCCCCceEEEEeC
Confidence 333 335557788887
No 55
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.87 E-value=9.6e-23 Score=143.37 Aligned_cols=142 Identities=30% Similarity=0.395 Sum_probs=104.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-CccccCCCC------------ccccc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQCPEGW------------VPVYT 73 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~ 73 (192)
|+|+|+|++||+||||+|.+||..++++|++|++||+|...+.+..+++.+.. .+.+..... .....
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 78999999999999999999999999999999999999999999999988887 333322222 12222
Q ss_pred -CCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEec
Q psy9977 74 -DASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVT 152 (192)
Q Consensus 74 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~ 152 (192)
....++++++........ .....+.+.++++.++ +.||+||+|+|+.........+.. .+|.+++|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~~~~l~----~~D~ii~v~ 148 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDL-------EELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDTQAVLE----LADKIILVV 148 (157)
T ss_dssp EESSTTEEEE--SSSSHHH-------HHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHHHHHHT----THSEEEEEE
T ss_pred eccCCCeEEecCCCCCCch-------hhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHHHHHHH----HCCEEEEEE
Confidence 134778877644322111 1134567888898888 799999999999999887654555 499999999
Q ss_pred CCCcccHH
Q psy9977 153 TPQAVSIE 160 (192)
Q Consensus 153 ~~~~~~~~ 160 (192)
.++..+++
T Consensus 149 ~~~~~s~~ 156 (157)
T PF13614_consen 149 RPDVTSIR 156 (157)
T ss_dssp ETTHHHHH
T ss_pred CCCccccc
Confidence 99988765
No 56
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.87 E-value=5.2e-22 Score=152.96 Aligned_cols=168 Identities=24% Similarity=0.332 Sum_probs=112.9
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCCCcccccCCCCceEEEeeccc
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
+.|++||||+||||+|+.+|.++|++|+||+++..|+. +++...||.+... ..... ..+|++.+.....
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa-~~L~d~l~~~~~~~~~~v~---------~~~~L~a~eid~~ 72 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA-HSLSDVLGQKLGGEPTKVE---------GVPNLSAMEIDPE 72 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT-THHHHHHTS--BSS-EEET---------TCSSEEEEE--HH
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC-ccHHHHhCCcCCCCCeEec---------CCCCceeeecCHH
Confidence 56677999999999999999999999999999999988 6788888774322 11110 1122222211000
Q ss_pred ------------------------cccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH---------
Q psy9977 88 ------------------------LKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--------- 134 (192)
Q Consensus 88 ------------------------~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--------- 134 (192)
..........++......+.++.+.+..++||+||+|+||.......
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~ 152 (305)
T PF02374_consen 73 AELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRW 152 (305)
T ss_dssp HHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHH
Confidence 00011122235666666777777776668999999999994321000
Q ss_pred ------------------------------HHHH--------------HhhhhcCCeEEEecCCCcccHHHHHHHHHHhH
Q psy9977 135 ------------------------------TVME--------------CLREVQCDGAVLVTTPQAVSIEDVRKEITFCK 170 (192)
Q Consensus 135 ------------------------------~~l~--------------~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~ 170 (192)
..+. .+.+++.+.+++|+.|+..++.++.++++.|+
T Consensus 153 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~ 232 (305)
T PF02374_consen 153 WLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELK 232 (305)
T ss_dssp HHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHH
Confidence 0000 01156677899999999999999999999999
Q ss_pred hcCCceeeEEeccCcc
Q psy9977 171 KTNIKILGLIENMSGY 186 (192)
Q Consensus 171 ~~~~~~~g~v~N~~~~ 186 (192)
..|+++.++|+||+-.
T Consensus 233 ~~gi~v~~vVvNrvlp 248 (305)
T PF02374_consen 233 LYGIPVDAVVVNRVLP 248 (305)
T ss_dssp HTT-EEEEEEEEEE-T
T ss_pred hcCCccCeEEEEcccc
Confidence 9999999999999855
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.84 E-value=7e-22 Score=144.47 Aligned_cols=131 Identities=32% Similarity=0.459 Sum_probs=78.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec-
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG- 85 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 85 (192)
.+|+|.|+|||+||||+|.|+|.+|+++|++|.++|+|.++++++.+++........ .++.+..+.
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~-------------~gi~Lp~p~~ 67 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQR-------------DGIELPVPSH 67 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHH-------------HT------EE
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHh-------------cCcccCCccc
Confidence 489999999999999999999999999999999999999999998888633221110 011111111
Q ss_pred -cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 86 -FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 86 -~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
.... ........+......+.+++..+. .++||||||+|+..+ ........ .||.++.|.+.+..
T Consensus 68 ~~L~~-~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~-~lsr~Ahs----~ADtLiTPlNdSfv 133 (261)
T PF09140_consen 68 FFLPP-DQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTPGTDD-RLSRVAHS----MADTLITPLNDSFV 133 (261)
T ss_dssp E-SSS-HHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE-SSS--HHHHHHHH----T-SEEEEEEESSHH
T ss_pred eeecc-cccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCCCCCc-HHHHHHHH----hCCEEEccCchhHH
Confidence 1111 111111222334467888888887 799999999995544 33333333 49999999888544
No 58
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.82 E-value=4.3e-19 Score=136.71 Aligned_cols=170 Identities=23% Similarity=0.287 Sum_probs=135.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCCCCCcccCCCCCC--------ccccCCCCcc-ccc
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGPSVPHLLNIENSD--------VHQCPEGWVP-VYT 73 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~ 73 (192)
.+.+.++|.|.|||+|.||+|.|+|+.++. .+..|+++|+|.+.+....+|+.++.. ..++.....+ ...
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~ 181 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLT 181 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHh
Confidence 456899999999999999999999999997 789999999999999888888888763 2222222222 233
Q ss_pred CCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecC
Q psy9977 74 DASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~ 153 (192)
....++.+++....+.... ......+.++++.++ ..||+||+|.|..+.++....+.. +|.+++|++
T Consensus 182 ~~~~~l~ll~a~~~~~~~~-------d~~~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~vL~~-----Sd~iviv~e 248 (366)
T COG4963 182 RLASGLKLLAAPTELAKNY-------DLKTGAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQVLSG-----SDEIVIVAE 248 (366)
T ss_pred ccCCCceeecCCcchhhhc-------ccccchHHHHHHHhh-ccCCeEEEcCCCccchHHHHHHhc-----CCeEEEEec
Confidence 4577888887654444322 244567888888887 899999999998888887777776 999999999
Q ss_pred CCcccHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 154 PQAVSIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
++..+++..+++++.+++. +.+....|+||++.
T Consensus 249 ~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~ 283 (366)
T COG4963 249 PSLASLRNAKELLDELKRLRPNDPKPILVLNRVGV 283 (366)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCC
Confidence 9999999999999999864 44466799999875
No 59
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.81 E-value=3.6e-19 Score=137.05 Aligned_cols=179 Identities=21% Similarity=0.257 Sum_probs=121.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC----ccccCCC-Cccc---cc---CC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD----VHQCPEG-WVPV---YT---DA 75 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~----~~~~~~~-~~~~---~~---~~ 75 (192)
..|.|++||||+||||+|+++|.++|+.|++|++|..|+. +++...|+.+-.. +...... ..+. .. ..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA-hsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~ 80 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA-HSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDE 80 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC-CchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHH
Confidence 4577788999999999999999999999999999999998 6888888763221 1110000 0000 00 00
Q ss_pred -CCceE-EEeecc-ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--------HHH-------
Q psy9977 76 -SQTLA-VMSIGF-LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--------TVM------- 137 (192)
Q Consensus 76 -~~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--------~~l------- 137 (192)
...+. .+..+. ......+....++......+.++.+...+.+||+||+|++|....... ..+
T Consensus 81 v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~~~ 160 (322)
T COG0003 81 VKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFKPR 160 (322)
T ss_pred HHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhhhH
Confidence 00000 000000 112234455567778888888888888878999999999994221000 000
Q ss_pred -------------------------HHhh--------------hhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceee
Q psy9977 138 -------------------------ECLR--------------EVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILG 178 (192)
Q Consensus 138 -------------------------~~~~--------------~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g 178 (192)
..+. ++.-..+.+|..|...++.++.+.++.+...++++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~ 240 (322)
T COG0003 161 RKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIPVDA 240 (322)
T ss_pred HHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCCchhe
Confidence 0000 3456789999999999999999999999999999999
Q ss_pred EEeccCcc
Q psy9977 179 LIENMSGY 186 (192)
Q Consensus 179 ~v~N~~~~ 186 (192)
+++||+.+
T Consensus 241 vi~n~~~p 248 (322)
T COG0003 241 VIVNKILP 248 (322)
T ss_pred eeeecccc
Confidence 99999876
No 60
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.81 E-value=4.6e-19 Score=130.95 Aligned_cols=170 Identities=19% Similarity=0.199 Sum_probs=112.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-Ccccc--------CCCCcccccCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQC--------PEGWVPVYTDASQ 77 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~ 77 (192)
|+|+|+ +|||.||||++.||+.+||++|+||+.|-|||...+...+++.... .+.+. .....+.+.....
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 689999 9999999999999999999999999999999999888777765543 21111 1123345566678
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhc--CCCCcEEEEeCCCCCChhH-HHHHHHhhhhcCCeEEEecCC
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVC--WKDVDYLIIDTPPGTSDEH-ITVMECLREVQCDGAVLVTTP 154 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~~D~IiiD~~~~~~~~~-~~~l~~~~~~~ad~viiv~~~ 154 (192)
++.++..|. |++..-..+.-.... .++++.+. ..+||+|++|.-+..-+.. ...+. ...|+.+++|++.
T Consensus 80 gi~CvEsGG----PePGvGCaGRGI~~a-~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir---~g~a~evyIVtSg 151 (273)
T PF00142_consen 80 GILCVESGG----PEPGVGCAGRGIITA-LELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIR---EGYAQEVYIVTSG 151 (273)
T ss_dssp GEEEEE-------SCTTSSBHHHHHHHH-HHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHH---TTS-SEEEEEEBS
T ss_pred CceeeccCC----Ccccccccccchhhh-hhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhh---hccCCEEEEEecC
Confidence 999988753 222222222222222 22333332 2569999999987553322 22333 2359999999999
Q ss_pred CcccHHHHHHHHHHhHhc----CCceeeEEeccCc
Q psy9977 155 QAVSIEDVRKEITFCKKT----NIKILGLIENMSG 185 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~ 185 (192)
+.+++..+.++...+++. +.++-|+|.|+-+
T Consensus 152 e~mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~ 186 (273)
T PF00142_consen 152 EFMSLYAANNICKAIKNFADRGGARLGGIICNSRN 186 (273)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SS
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCceEEEEecCCC
Confidence 999999999998888754 4678999999654
No 61
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.9e-19 Score=126.14 Aligned_cols=173 Identities=23% Similarity=0.220 Sum_probs=123.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccC-CCCCCc----cc----cCCCCcccccCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLN-IENSDV----HQ----CPEGWVPVYTDAS 76 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~-~~~~~~----~~----~~~~~~~~~~~~~ 76 (192)
|++|+|+ +|||.||||++.|+|.+|++.|+||++|-|||...+...++| .....+ .+ .....++++.+..
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 5789999 999999999999999999999999999999999999888888 333321 11 1233445677889
Q ss_pred CceEEEeeccccccCCcccccCCchhHHHHHHHHHhhc--CCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCC
Q psy9977 77 QTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVC--WKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTP 154 (192)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~ 154 (192)
.++++..+|. |++..-..+.-....++. ++.+. .+..|+|++|..+..-+...+. .+....||.+++|++.
T Consensus 80 ~Gv~CVEsGG----PepGvGCAGRGVitai~~-Le~lgaf~~~~DvviyDVLGDVVCGGFAm--PiReg~AdeiyIVtSg 152 (278)
T COG1348 80 GGVKCVESGG----PEPGVGCAGRGVITAINL-LEELGAFEEDLDVVIYDVLGDVVCGGFAM--PIREGYADEIYIVTSG 152 (278)
T ss_pred CceEEeecCC----CCCCCCcccchHHHHHHH-HHHhCCccccCCEEEEeccCceeecceee--ehhcccCcEEEEEecC
Confidence 9999987753 333333333322222222 22221 1456999999987654433211 1223359999999999
Q ss_pred CcccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 155 QAVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
+.+++..+.++.+.+++. +.++-|+|.|+-..
T Consensus 153 e~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~ 188 (278)
T COG1348 153 EMMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSV 188 (278)
T ss_pred chHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCc
Confidence 999999999988887643 57788999997653
No 62
>KOG2825|consensus
Probab=99.80 E-value=1.5e-19 Score=131.43 Aligned_cols=184 Identities=19% Similarity=0.266 Sum_probs=119.7
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCccccc-CCCCceE
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYT-DASQTLA 80 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 80 (192)
+++......|+++|||+||||.+..||..++..+.+||+|..||. ++++.-|+...........++..+.. ...+++.
T Consensus 14 l~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA-HNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e 92 (323)
T KOG2825|consen 14 LEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA-HNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVE 92 (323)
T ss_pred hhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc-cchHHHHHHHhcCCCccccChhhheeeecCCchh
Confidence 466778899999999999999999999999999999999999998 67777665443321111111111100 0000000
Q ss_pred EEeecccccc--C-----------CcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHH----------
Q psy9977 81 VMSIGFLLKN--R-----------DDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVM---------- 137 (192)
Q Consensus 81 ~~~~~~~~~~--~-----------~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l---------- 137 (192)
+-........ + +..-..++.+..-.+.+++...+.-+||.||+|+.|.-.......+
T Consensus 93 ~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lgK 172 (323)
T KOG2825|consen 93 MGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLGK 172 (323)
T ss_pred hhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHHH
Confidence 0000000000 0 0011123444444455555555556899999999985332111000
Q ss_pred ------------H--------------------------------HhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcC
Q psy9977 138 ------------E--------------------------------CLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTN 173 (192)
Q Consensus 138 ------------~--------------------------------~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~ 173 (192)
. .+.+++++.+++|..++..++.++.|+++.|.+.+
T Consensus 173 l~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~ 252 (323)
T KOG2825|consen 173 LLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQG 252 (323)
T ss_pred HHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcC
Confidence 0 01178899999999999999999999999999999
Q ss_pred CceeeEEeccCcc
Q psy9977 174 IKILGLIENMSGY 186 (192)
Q Consensus 174 ~~~~g~v~N~~~~ 186 (192)
++..-+|+|+.-|
T Consensus 253 idthnIIVNQLL~ 265 (323)
T KOG2825|consen 253 IDTHNIIVNQLLF 265 (323)
T ss_pred CcccceeeeeccC
Confidence 9999999999876
No 63
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.72 E-value=4.1e-16 Score=108.34 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=86.1
Q ss_pred EeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC-CcccCCCCCCccccCCCCcccccCCCCceEE--Eeecccc
Q psy9977 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV-PHLLNIENSDVHQCPEGWVPVYTDASQTLAV--MSIGFLL 88 (192)
Q Consensus 12 ~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 88 (192)
+.+++|+||||++.+++..+.++|++|+++|+|++.+.. ...++. ...+. +... .+++.+ ++.+...
T Consensus 4 ~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~-~~~~~-------~~~~--~~~~~~~~~~~~~~~ 73 (148)
T cd03114 4 ITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGD-RIRME-------RHAS--DPGVFIRSLATRGFL 73 (148)
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcC-ceEhh-------heec--CCCceEEEcCCcCcc
Confidence 348999999999999999999999999999999864321 111111 00010 1111 122222 2222111
Q ss_pred ccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHH
Q psy9977 89 KNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITF 168 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~ 168 (192)
... .....+.++.++..+||+||||+ ++........+.. ||.+++|+.|+...-..+.+. ..
T Consensus 74 ~~~-----------~~~~~~~~~~~~~~~~D~iiIDt-aG~~~~~~~~~~~-----Ad~~ivv~tpe~~D~y~~~k~-~~ 135 (148)
T cd03114 74 GGL-----------SRATPEVIRVLDAAGFDVIIVET-VGVGQSEVDIASM-----ADTTVVVMAPGAGDDIQAIKA-GI 135 (148)
T ss_pred ccc-----------chhHHHHHHHHHhcCCCEEEEEC-CccChhhhhHHHh-----CCEEEEEECCCchhHHHHhhh-hH
Confidence 110 11233333444335899999999 5555544444444 999999999996666655555 55
Q ss_pred hHhcCCceeeEEeccCc
Q psy9977 169 CKKTNIKILGLIENMSG 185 (192)
Q Consensus 169 l~~~~~~~~g~v~N~~~ 185 (192)
++..++ +++||++
T Consensus 136 ~~~~~~----~~~~k~~ 148 (148)
T cd03114 136 MEIADI----VVVNKAD 148 (148)
T ss_pred hhhcCE----EEEeCCC
Confidence 555544 8899875
No 64
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.68 E-value=2e-15 Score=114.79 Aligned_cols=151 Identities=22% Similarity=0.268 Sum_probs=92.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
+.+++|+|+ +.+|+||||++++||.++++.|++|+++|+|+.+.... .. ...|. ...++.++.
T Consensus 70 ~~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~-------~q----l~~~~-----~~~~i~~~~ 132 (272)
T TIGR00064 70 NKPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAI-------EQ----LEEWA-----KRLGVDVIK 132 (272)
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHH-------HH----HHHHH-----HhCCeEEEe
Confidence 456788888 79999999999999999999999999999998654210 00 00000 111233332
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHH---Hhh-------hhcCCeEEEecC
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVME---CLR-------EVQCDGAVLVTT 153 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~---~~~-------~~~ad~viiv~~ 153 (192)
.... .. ......+.+..+..++||+||||+||...... ..+. .+. ...+|.+++|++
T Consensus 133 ~~~~-~d-----------p~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~-~~~~el~~~~~~~~~~~~~~~~~~~LVl~ 199 (272)
T TIGR00064 133 QKEG-AD-----------PAAVAFDAIQKAKARNIDVVLIDTAGRLQNKV-NLMDELKKIKRVIKKVDKDAPDEVLLVLD 199 (272)
T ss_pred CCCC-CC-----------HHHHHHHHHHHHHHCCCCEEEEeCCCCCcchH-HHHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 2110 00 01122222222222689999999999876432 2221 111 123789999999
Q ss_pred CCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 154 PQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+. ...+.+.+.....+.. ++.|+|+||+|-.
T Consensus 200 a~-~~~~~~~~~~~f~~~~--~~~g~IlTKlDe~ 230 (272)
T TIGR00064 200 AT-TGQNALEQAKVFNEAV--GLTGIILTKLDGT 230 (272)
T ss_pred CC-CCHHHHHHHHHHHhhC--CCCEEEEEccCCC
Confidence 96 5666666665545444 4579999999853
No 65
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.64 E-value=9.9e-16 Score=93.62 Aligned_cols=71 Identities=58% Similarity=1.062 Sum_probs=57.8
Q ss_pred cEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccCCCCCC
Q psy9977 119 DYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYTCPHCK 192 (192)
Q Consensus 119 D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~~~~~ 192 (192)
||+|+|+||+.++.....+..+ ..+.+++|+.|...+...+++.++.+++.+++++|+|-|+.+|+||+||
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~---~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg 72 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYL---PIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCG 72 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH-----SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT-
T ss_pred CEEEEeCCCCCCcHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCC
Confidence 8999999999999998888877 4889999999999999999999999999999999999999999999997
No 66
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.63 E-value=1.1e-14 Score=103.30 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=94.9
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-C-cc---ccCCCCcccccCCCCceEEEeec
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-D-VH---QCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
|++..+|+||||++.+||..|+++|+||.++.--..... ..+.. . +. .....+... ..+.. ..
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~~~~~~-----~~~~~--~~ 69 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTALDWDEV-----NPYAF--AL 69 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCCchhcc-----CCeee--CC
Confidence 688999999999999999999999999999754332110 00000 0 00 001111111 00010 00
Q ss_pred cccccCCccccc-CCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh------hHHHHHHHhhhhcCCeEEEecCCCccc
Q psy9977 86 FLLKNRDDAIIW-RGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD------EHITVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~------~~~~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
.. .|...... ..+.....+.+.+..++ ++||+||||++++... .....+..+ .+.+|+|+.++..+
T Consensus 70 ~~--~p~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~----~~~vilV~~~~~~~ 142 (166)
T TIGR00347 70 PL--SPHIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLL----QLPVILVVRVKLGT 142 (166)
T ss_pred CC--ChHHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHh----CCCEEEEECCCCcH
Confidence 00 00000000 11122334666666676 7999999999976442 122233333 67789999999999
Q ss_pred HHHHHHHHHHhHhcCCceeeEEec
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIEN 182 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N 182 (192)
++.+....+.+++.+.++.|+|+|
T Consensus 143 ~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 143 INHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeC
Confidence 999999999999999999999998
No 67
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.61 E-value=5e-15 Score=98.52 Aligned_cols=113 Identities=25% Similarity=0.375 Sum_probs=72.9
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecccccc
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLKN 90 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (192)
++++|||+||||++.++|++++++|++|+++|+|+ +++...++... .+...++..+.....
T Consensus 3 ~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~-----------------~~~~~~i~~g~~~~~ 63 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV-----------------GEIKLLLVMGMGRPG 63 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhcc-----------------CCceEEEEecccccC
Confidence 45589999999999999999999999999999998 22222222111 111111222221111
Q ss_pred CCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEe
Q psy9977 91 RDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLV 151 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv 151 (192)
+..... .....+++++.++....||++++|++++++......+.. +|.+++|
T Consensus 64 ~~g~~~----~~n~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~~~~-----~d~vv~v 115 (116)
T cd02034 64 GEGCYC----PENALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGTAEG-----VDLLVVV 115 (116)
T ss_pred CCCCEe----hhhHHHHHHHHHeEccCCCEEEEecHHHHHHHHhhcccc-----CCEEEEe
Confidence 111111 111267888887633799999999999998776666655 8988886
No 68
>PRK10867 signal recognition particle protein; Provisional
Probab=99.60 E-value=2.6e-14 Score=114.48 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=91.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
+.+|.++ +..|+||||++++||.+|+++ |++|++||+|.+++.....+. ......++.+.+.
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~----------------~~a~~~gv~v~~~ 162 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLK----------------TLGEQIGVPVFPS 162 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHH----------------HHHhhcCCeEEec
Confidence 4445555 899999999999999999998 999999999998875321110 0011223444332
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh--hHHHHHHHhh-hhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD--EHITVMECLR-EVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~--~~~~~l~~~~-~~~ad~viiv~~~~~~~~~~ 161 (192)
+. .. ...+...+.+...+...||+||||+++.... .....+..+. ....+.+++|+++.. -+.
T Consensus 163 ~~-~~-----------dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~--gq~ 228 (433)
T PRK10867 163 GD-GQ-----------DPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT--GQD 228 (433)
T ss_pred CC-CC-----------CHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc--HHH
Confidence 11 00 1123334444444436899999999997643 2222221111 124678888988742 244
Q ss_pred HHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+..+.+.+ .+++.|+|+|+.|-
T Consensus 229 av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 229 AVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred HHHHHHHHHh-hCCCCEEEEeCccC
Confidence 4455555543 45678999999984
No 69
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.60 E-value=5.5e-14 Score=100.36 Aligned_cols=150 Identities=24% Similarity=0.315 Sum_probs=90.5
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecccc
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLL 88 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (192)
+.++.+..|+||||++.++|..+++.|++|+++|+|..+++....+.. .....++.+.+... .
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~----------------~~~~~~~~~~~~~~-~ 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV----------------LGEQVGVPVFEEGE-G 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH----------------hcccCCeEEEecCC-C
Confidence 345559999999999999999999999999999999887644321110 00112344433210 0
Q ss_pred ccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh--hHHHHHHHhhh-hcCCeEEEecCCCcccHHHHHHH
Q psy9977 89 KNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD--EHITVMECLRE-VQCDGAVLVTTPQAVSIEDVRKE 165 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~--~~~~~l~~~~~-~~ad~viiv~~~~~~~~~~~~~~ 165 (192)
. ...+.+.+.+....+..||+||+|+++.... .....+..+.+ ...|.+++|+++. ...+.....
T Consensus 65 ~-----------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~ 132 (173)
T cd03115 65 K-----------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQA 132 (173)
T ss_pred C-----------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHH
Confidence 0 1122233333332226899999999987642 12222222211 1478899999984 444444444
Q ss_pred HHHhHhcCCceeeEEeccCccCCC
Q psy9977 166 ITFCKKTNIKILGLIENMSGYTCP 189 (192)
Q Consensus 166 ~~~l~~~~~~~~g~v~N~~~~~~~ 189 (192)
.+..+..+ +.++|+||.|....
T Consensus 133 ~~~~~~~~--~~~viltk~D~~~~ 154 (173)
T cd03115 133 KAFNEALG--ITGVILTKLDGDAR 154 (173)
T ss_pred HHHHhhCC--CCEEEEECCcCCCC
Confidence 44434555 57999999997543
No 70
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.59 E-value=3.8e-14 Score=91.27 Aligned_cols=92 Identities=35% Similarity=0.632 Sum_probs=75.9
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccccc
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLK 89 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (192)
.++++++|+||||++.++|..|++.|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~----------------------------------------------- 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID----------------------------------------------- 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC-----------------------------------------------
Confidence 345567799999999999999999999999999
Q ss_pred cCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH---HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHH
Q psy9977 90 NRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH---ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEI 166 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~---~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~ 166 (192)
|+||+|+++...... ...... +|.+++|+.++..++....+..
T Consensus 35 -----------------------------d~iivD~~~~~~~~~~~~~~~~~~-----~~~vi~v~~~~~~~~~~~~~~~ 80 (99)
T cd01983 35 -----------------------------DYVLIDTPPGLGLLVLLCLLALLA-----ADLVIIVTTPEALAVLGARRLT 80 (99)
T ss_pred -----------------------------CEEEEeCCCCccchhhhhhhhhhh-----CCEEEEecCCchhhHHHHHHHH
Confidence 999999999988776 344443 9999999999999999999885
Q ss_pred HHh---HhcCCceeeEEec
Q psy9977 167 TFC---KKTNIKILGLIEN 182 (192)
Q Consensus 167 ~~l---~~~~~~~~g~v~N 182 (192)
+.. ...+....++++|
T Consensus 81 ~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 81 EVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHHHhhccCCceEEEEeC
Confidence 433 3445556778776
No 71
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.57 E-value=6e-14 Score=112.38 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=90.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
++.+.++++..|+||||++++||.++. +.|++|++||+|.+++....-+. .+ ....++.+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~-----------~~-----a~~~gvp~~~~ 161 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLK-----------VL-----GQQVGVPVFAL 161 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHH-----------HH-----HHhcCCceEec
Confidence 456777779999999999999999987 58999999999998775321000 00 00111222211
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh--HHHHHHHhh-hhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE--HITVMECLR-EVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~--~~~~l~~~~-~~~ad~viiv~~~~~~~~~~ 161 (192)
.. ... ..+...+.+..+..+.||+||+|+++..... ....+..+. ....|.+++|+++. .-+.
T Consensus 162 ~~-~~~-----------P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~--tgq~ 227 (428)
T TIGR00959 162 GK-GQS-----------PVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM--TGQD 227 (428)
T ss_pred CC-CCC-----------HHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc--chHH
Confidence 10 000 1122334444433368999999999976432 122221111 12478889998874 2345
Q ss_pred HHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+..+.+.. .+++.|+|+|+.|-
T Consensus 228 ~~~~a~~f~~-~v~i~giIlTKlD~ 251 (428)
T TIGR00959 228 AVNTAKTFNE-RLGLTGVVLTKLDG 251 (428)
T ss_pred HHHHHHHHHh-hCCCCEEEEeCccC
Confidence 5555555542 34568999999984
No 72
>PRK13768 GTPase; Provisional
Probab=99.57 E-value=4.1e-14 Score=106.78 Aligned_cols=164 Identities=16% Similarity=0.188 Sum_probs=86.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
++++.|. +.||+||||++.+++.+++++|++|++||+|++...++.....+...+. ...+.....
T Consensus 2 ~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~----~~~~v~~~~---------- 66 (253)
T PRK13768 2 MYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYV----TAREIMKKY---------- 66 (253)
T ss_pred cEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhhe----eHHHHHHHc----------
Confidence 4445555 6799999999999999999999999999999875433211110000010 001111000
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-----HHHHHHhhhhcCCeEEEecCCCcccHH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-----ITVMECLREVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-----~~~l~~~~~~~ad~viiv~~~~~~~~~ 160 (192)
...|..............+.++...++....|++|+|+|+..+... ......+....++.++++++.......
T Consensus 67 --~l~p~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~ 144 (253)
T PRK13768 67 --GLGPNGALIASVDLLLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTP 144 (253)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCH
Confidence 0001111111111123344555555543566999999998654321 112222211127888888888543211
Q ss_pred HHHHHHHHh-----HhcCCceeeEEeccCccC
Q psy9977 161 DVRKEITFC-----KKTNIKILGLIENMSGYT 187 (192)
Q Consensus 161 ~~~~~~~~l-----~~~~~~~~g~v~N~~~~~ 187 (192)
.-......+ .+.+.+++ +|+||.|..
T Consensus 145 ~d~~~~~~l~~~~~~~~~~~~i-~v~nK~D~~ 175 (253)
T PRK13768 145 SDFVSLLLLALSVQLRLGLPQI-PVLNKADLL 175 (253)
T ss_pred HHHHHHHHHHHHHHHHcCCCEE-EEEEhHhhc
Confidence 111111111 14577766 899999864
No 73
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.56 E-value=3e-13 Score=100.19 Aligned_cols=47 Identities=34% Similarity=0.468 Sum_probs=43.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~ 51 (192)
+++++++.++|||+||||+|++||.+++++|++|+++|+|++.+++.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~ 47 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFE 47 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhh
Confidence 46899999999999999999999999999999999999999976553
No 74
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.56 E-value=1.5e-13 Score=109.66 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=90.7
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+.+|+++ |..|+||||++++||.++.++|++|++|++|+++++....+. ......++.+...
T Consensus 99 ~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk----------------~~a~~~~vp~~~~ 161 (429)
T TIGR01425 99 KQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLK----------------QNATKARIPFYGS 161 (429)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHH----------------HHhhccCCeEEee
Confidence 34566666 689999999999999999999999999999998864321110 0001112222110
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhh-hhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLR-EVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~-~~~ad~viiv~~~~~~~~~~ 161 (192)
. .. . .......+.+..++...||+|||||++....... .-+..+. ..+.|.+++|+++... +.
T Consensus 162 ~---~~-~--------dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~ 227 (429)
T TIGR01425 162 Y---TE-S--------DPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QA 227 (429)
T ss_pred c---CC-C--------CHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hh
Confidence 0 00 0 1112333444444436899999999987654321 1222211 2356888999987532 22
Q ss_pred HHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
..+..+.+.+ .+++.|+|++|.|-.+
T Consensus 228 a~~~a~~F~~-~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 228 AEAQAKAFKD-SVDVGSVIITKLDGHA 253 (429)
T ss_pred HHHHHHHHHh-ccCCcEEEEECccCCC
Confidence 2334455543 2456899999999654
No 75
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.55 E-value=3.9e-13 Score=104.30 Aligned_cols=151 Identities=22% Similarity=0.240 Sum_probs=90.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++|+++ |..|+||||++++||..++..|++|+++|+|+++..... + ...| ....++.+++.
T Consensus 113 ~~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~e----------q-l~~~-----a~~~~i~~~~~ 175 (318)
T PRK10416 113 KPFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIE----------Q-LQVW-----GERVGVPVIAQ 175 (318)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHH----------H-HHHH-----HHHcCceEEEe
Confidence 56788888 488899999999999999999999999999987643100 0 0000 11123333332
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhh-------hhcCCeEEEecCCC
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLR-------EVQCDGAVLVTTPQ 155 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~-------~~~ad~viiv~~~~ 155 (192)
.. ...| .....+.+..... +.||+||||+||....... ..+..+. ....+.+++|+++.
T Consensus 176 ~~-~~dp----------a~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 176 KE-GADP----------ASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred CC-CCCH----------HHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 10 0010 1112222322233 7999999999997653221 1111111 22467788888887
Q ss_pred cccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 156 AVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
...+.+.+.....+.. ++.|+|+||.|-.
T Consensus 244 -~g~~~~~~a~~f~~~~--~~~giIlTKlD~t 272 (318)
T PRK10416 244 -TGQNALSQAKAFHEAV--GLTGIILTKLDGT 272 (318)
T ss_pred -CChHHHHHHHHHHhhC--CCCEEEEECCCCC
Confidence 4555555554444333 5679999999953
No 76
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.51 E-value=5.7e-14 Score=104.23 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecccc
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLL 88 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (192)
|.|+++..|+|||++++.|++.|.++|++|.++-- ...+.......++..+.....+...... ....+. .. ..
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP--v~~g~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~-~~-~~-- 74 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP--VQSGCEETDRNGDALALQRLSGLPLDYE-DVNPYR-FE-EP-- 74 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee--EecCCCCCCCcHHHHHHHHHcCCCCChh-hcCcee-eC-CC--
Confidence 78899999999999999999999999999988542 2111100000000100000001000000 000011 10 00
Q ss_pred ccCCcccccC-CchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH------HHHHHhhhhcCCeEEEecCCCcccHHH
Q psy9977 89 KNRDDAIIWR-GPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI------TVMECLREVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~------~~l~~~~~~~ad~viiv~~~~~~~~~~ 161 (192)
..|....... .....+.+.+.++.++ ++||+||||++++...... ..+..+ ..-+++|+.++..+++.
T Consensus 75 ~sp~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l----~~pvilV~~~~~~~i~~ 149 (222)
T PRK00090 75 LSPHLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQL----QLPVILVVGVKLGCINH 149 (222)
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHh----CCCEEEEECCCCcHHHH
Confidence 0000000001 1122345666666666 7999999999987532211 111111 34588999999889999
Q ss_pred HHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+...++.++..++++.|+|+|+++.
T Consensus 150 ~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 150 TLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred HHHHHHHHHHCCCCeEEEEEccCCC
Confidence 9999999988899999999999864
No 77
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.49 E-value=4.7e-13 Score=107.53 Aligned_cols=149 Identities=21% Similarity=0.276 Sum_probs=90.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+.+|+++ |..|+||||++++||.+|.++|++|++|++|..+++....+. ... ...++.+...
T Consensus 94 ~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~--------------~la--~~~gvp~~~~ 156 (437)
T PRK00771 94 KPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLK--------------QLA--EKIGVPFYGD 156 (437)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHH--------------HHH--HHcCCcEEec
Confidence 45566666 789999999999999999999999999999988763211000 000 0011111110
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH--HHHHhh-hhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT--VMECLR-EVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~--~l~~~~-~~~ad~viiv~~~~~~~~~~ 161 (192)
+ ........+++.+..+. .+|+||||+++........ -+..+. ...+|.+++|+++... ..
T Consensus 157 ------~------~~~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~ 220 (437)
T PRK00771 157 ------P------DNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQ 220 (437)
T ss_pred ------C------CccCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HH
Confidence 0 00112344566666664 5799999999876643211 011111 1248899999998654 23
Q ss_pred HHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+..+.+.+ .+++.|+|+||+|-.
T Consensus 221 av~~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 221 AKNQAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred HHHHHHHHHh-cCCCCEEEEecccCC
Confidence 3334444443 356789999999853
No 78
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.47 E-value=1.5e-12 Score=102.32 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=94.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++|+|+|+ +|+||||+++.||..+..+|++|+++++|+++.+... .+... ....++.+...
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvE--------------QLk~y--ae~lgipv~v~ 302 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQ--------------QLQDY--VKTIGFEVIAV 302 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHH--------------HHHHH--hhhcCCcEEec
Confidence 4578888855 9999999999999999999999999999988632210 00000 00122222211
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcC-CCCcEEEEeCCCCCChhH--HHHHHHhh-hhcCCeEEEecCCCcccHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCW-KDVDYLIIDTPPGTSDEH--ITVMECLR-EVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~D~IiiD~~~~~~~~~--~~~l~~~~-~~~ad~viiv~~~~~~~~~ 160 (192)
.....+.+.+..++. .+||+||||+++...... ..-+..+. ....+.+++|+++. ..-+
T Consensus 303 ----------------~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~ 365 (436)
T PRK11889 303 ----------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSK 365 (436)
T ss_pred ----------------CCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChH
Confidence 112345566666541 369999999998765322 11222211 22457788887664 4445
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
.+...++.++. +++.++|+.|.|-.+
T Consensus 366 d~~~i~~~F~~--~~idglI~TKLDET~ 391 (436)
T PRK11889 366 DMIEIITNFKD--IHIDGIVFTKFDETA 391 (436)
T ss_pred HHHHHHHHhcC--CCCCEEEEEcccCCC
Confidence 66777777776 456799999999655
No 79
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.46 E-value=3.4e-12 Score=99.87 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=92.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
..++++|+|++ |+||||++++||..+.++|++|.+|++|+++.+... .|.... ...++.+...
T Consensus 205 ~~~ii~lvGpt-GvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAve--------------QLk~ya--e~lgvpv~~~ 267 (407)
T PRK12726 205 NHRIISLIGQT-GVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVE--------------QFQGYA--DKLDVELIVA 267 (407)
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHH--------------HHHHHh--hcCCCCEEec
Confidence 46788888775 999999999999999999999999999988753211 111100 0111111100
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChh--HHHHHHHhh-hhcCCeEEEecCCCcccHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDE--HITVMECLR-EVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~--~~~~l~~~~-~~~ad~viiv~~~~~~~~~ 160 (192)
.....+.+.+..++ .+.||+||||+++..... ...-+..+. ....+.+++|.+++ ....
T Consensus 268 ----------------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~ 330 (407)
T PRK12726 268 ----------------TSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSA 330 (407)
T ss_pred ----------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHH
Confidence 11233556555554 257999999999875422 222222221 12346667777663 4445
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
++..+++.++. +++.++|++|+|-.|
T Consensus 331 d~~~i~~~f~~--l~i~glI~TKLDET~ 356 (407)
T PRK12726 331 DVMTILPKLAE--IPIDGFIITKMDETT 356 (407)
T ss_pred HHHHHHHhcCc--CCCCEEEEEcccCCC
Confidence 55566666654 456799999999654
No 80
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.46 E-value=2.9e-13 Score=103.81 Aligned_cols=155 Identities=21% Similarity=0.269 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCCCcccccCCCCceEEEee-----------------
Q psy9977 23 VSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEGWVPVYTDASQTLAVMSI----------------- 84 (192)
Q Consensus 23 ~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~----------------- 84 (192)
+|+++|..++++|+||+++|+|++ +++...||.+... ..... ..++++....
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~-~~l~~~~~~~~~~~~~~v~---------~~~~L~~~~id~~~~~~~~~~~~~~~~ 70 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPA-HSLSDVFEQEIGHTPTKVT---------GVENLSAVEIDPQAALEEYRAKLVEQI 70 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCC-CCHHHHhCCccCCCCeecc---------CCCCceEEEcCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 5888888754322 00000 0112221110
Q ss_pred ------c-cccccCCcccccCCchhHHHHHHHHHhhcC--CCCcEEEEeCCCCCChhHH---------------------
Q psy9977 85 ------G-FLLKNRDDAIIWRGPKKTAMIRQIINDVCW--KDVDYLIIDTPPGTSDEHI--------------------- 134 (192)
Q Consensus 85 ------~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~~D~IiiD~~~~~~~~~~--------------------- 134 (192)
. .......+....++......+.++.+.+.+ ++||+||+|+||.-.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~~~ 150 (284)
T TIGR00345 71 KGNLPDGDMLGDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRSKL 150 (284)
T ss_pred hhhccccccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0 000000111223566666667777766653 6899999999994321000
Q ss_pred H----------------------------HHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 135 T----------------------------VMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 135 ~----------------------------~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
. ....+.++....+++|+.|+..++.++.++++.++..+.+..++|+|++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~ 230 (284)
T TIGR00345 151 GPMLKLFMGAGESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLP 230 (284)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcC
Confidence 0 001111455677999999999999999999999999999999999999876
Q ss_pred C
Q psy9977 187 T 187 (192)
Q Consensus 187 ~ 187 (192)
.
T Consensus 231 ~ 231 (284)
T TIGR00345 231 E 231 (284)
T ss_pred C
Confidence 5
No 81
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.43 E-value=2.2e-12 Score=101.35 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=94.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+.+|.++ +-.|+||||.+..||++|.++|++|++|-+|.++|..-. ....+ ...-++.+.+.
T Consensus 99 ~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~e--------------QL~~L--a~q~~v~~f~~ 161 (451)
T COG0541 99 PPTVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIE--------------QLKQL--AEQVGVPFFGS 161 (451)
T ss_pred CCeEEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHH--------------HHHHH--HHHcCCceecC
Confidence 34455555 777899999999999999999999999999999985411 01011 01122233221
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhh----hhcCCeEEEecCCCcccHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLR----EVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~----~~~ad~viiv~~~~~~~~~ 160 (192)
+ .+..-.+..++.++.+++..||+||+||.+.+.... ..+..+. ....|.+++|+++-.. +
T Consensus 162 ~------------~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide-~Lm~El~~Ik~~~~P~E~llVvDam~G--Q 226 (451)
T COG0541 162 G------------TEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDE-ELMDELKEIKEVINPDETLLVVDAMIG--Q 226 (451)
T ss_pred C------------CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccH-HHHHHHHHHHhhcCCCeEEEEEecccc--h
Confidence 0 001123456777777776789999999998775433 2222222 3468899999987422 2
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+.+..+.|.+ .+++.|+|+.+.|-.
T Consensus 227 dA~~~A~aF~e-~l~itGvIlTKlDGd 252 (451)
T COG0541 227 DAVNTAKAFNE-ALGITGVILTKLDGD 252 (451)
T ss_pred HHHHHHHHHhh-hcCCceEEEEcccCC
Confidence 23333333333 456789999999853
No 82
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=99.42 E-value=1.1e-11 Score=90.75 Aligned_cols=174 Identities=16% Similarity=0.091 Sum_probs=108.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
+++.+.|+++--|+|||.+++.|+++|.++|++|.+.--= +.+...--..++........+....+ ...+.+.+..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPV--qsG~~~~~~~~D~~~l~~~~~~~~~~--~~~~py~f~~ 76 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPV--QTGSEETAENSDALVLQRLSGLDLSY--ELINPYRFKE 76 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECce--eeCCCCCCCCchHHHHHHhcCCCccc--ccccceecCC
Confidence 5789999999999999999999999999999999765432 22111100001111111111111100 0111122211
Q ss_pred ccccccCCccccc-CCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhhhhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIW-RGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLREVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~~~~ad~viiv~~~~~~~~~~ 161 (192)
+.+|.-+... ....+.+.+..-+..+. ..||+|+|++.+++-.+.. ..+..+.....--+|+|+.....++++
T Consensus 77 ---P~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINH 152 (223)
T COG0132 77 ---PLSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINH 152 (223)
T ss_pred ---CCCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHH
Confidence 1122111111 12345556666666676 6999999999997643211 112222222466789999999999999
Q ss_pred HHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.-.++.++..|++..|+|+|+.+.
T Consensus 153 tlLt~eal~~~gl~l~G~I~n~~~~ 177 (223)
T COG0132 153 TLLTVEALRARGLPLAGWVANGINP 177 (223)
T ss_pred HHHHHHHHHHCCCCEEEEEEccCCC
Confidence 9999999999999999999998875
No 83
>PRK14974 cell division protein FtsY; Provisional
Probab=99.38 E-value=1.6e-11 Score=95.74 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=86.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
+++|+|+ |..|+||||++++||.++.++|++|+++++|..+......+ .. .....++.++...
T Consensus 140 ~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL--------------~~--~a~~lgv~v~~~~ 202 (336)
T PRK14974 140 PVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL--------------EE--HAERLGVKVIKHK 202 (336)
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH--------------HH--HHHHcCCceeccc
Confidence 4566666 68999999999999999999999999999997754321100 00 0001122222100
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh--HHHHHHHhh-hhcCCeEEEecCCCcccHHHH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE--HITVMECLR-EVQCDGAVLVTTPQAVSIEDV 162 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~--~~~~l~~~~-~~~ad~viiv~~~~~~~~~~~ 162 (192)
.+......+.+.+...+..+||+||||+++..... ....+..+. ....|.+++|.++.. .. ..
T Consensus 203 ------------~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~-g~-d~ 268 (336)
T PRK14974 203 ------------YGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA-GN-DA 268 (336)
T ss_pred ------------CCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc-ch-hH
Confidence 00011222334444333368999999999877532 222222211 124788888888743 33 33
Q ss_pred HHHHHHhHhcCCceeeEEeccCccC
Q psy9977 163 RKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 163 ~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+..+.+.+ .+++.|+|+||+|-.
T Consensus 269 ~~~a~~f~~-~~~~~giIlTKlD~~ 292 (336)
T PRK14974 269 VEQAREFNE-AVGIDGVILTKVDAD 292 (336)
T ss_pred HHHHHHHHh-cCCCCEEEEeeecCC
Confidence 333344432 234579999999964
No 84
>KOG0781|consensus
Probab=99.37 E-value=2.1e-12 Score=102.07 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=109.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+-+|.|. +-.|+||||.-+.+|++|-+.++||++.-||+.+.+. .+...++.+++.-+..
T Consensus 377 rPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGA------------------vEQLrtHv~rl~~l~~ 437 (587)
T KOG0781|consen 377 RPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGA------------------VEQLRTHVERLSALHG 437 (587)
T ss_pred CCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhH------------------HHHHHHHHHHHHHhcc
Confidence 44455555 8889999999999999999999999999999887643 2222333333321111
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhh----hhcCCeEEEecCC--Cccc
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLR----EVQCDGAVLVTTP--QAVS 158 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~----~~~ad~viiv~~~--~~~~ 158 (192)
..... .....+.+.....++.+.+.+.+.||+|++|+.+...+.. ..|..+. ....|.++.|.++ +..+
T Consensus 438 ~~v~l----fekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~-~lm~~l~k~~~~~~pd~i~~vgealvg~ds 512 (587)
T KOG0781|consen 438 TMVEL----FEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNA-PLMTSLAKLIKVNKPDLILFVGEALVGNDS 512 (587)
T ss_pred chhHH----HhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCCh-hHHHHHHHHHhcCCCceEEEehhhhhCcHH
Confidence 00000 0000223345566777777776899999999999876654 2332222 4578999999888 4557
Q ss_pred HHHHHHHHHHhHhcCC--ceeeEEeccCccCCCC
Q psy9977 159 IEDVRKEITFCKKTNI--KILGLIENMSGYTCPH 190 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~--~~~g~v~N~~~~~~~~ 190 (192)
++++.++-+.+.+..- .+.|+|+.++|.+.+.
T Consensus 513 v~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d~ 546 (587)
T KOG0781|consen 513 VDQLKKFNRALADHSTPRLIDGILLTKFDTVDDK 546 (587)
T ss_pred HHHHHHHHHHHhcCCCccccceEEEEeccchhhH
Confidence 8888888888886542 2789999999986654
No 85
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.35 E-value=1.5e-11 Score=89.27 Aligned_cols=149 Identities=23% Similarity=0.250 Sum_probs=90.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccc-cCCCCceEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVY-TDASQTLAVMSI 84 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 84 (192)
+++|+++++ .|+||||.++.||.++..+|++|.+|-+|..+.+. .+++. ....-++.+...
T Consensus 1 p~vi~lvGp-tGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga-----------------~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 1 PKVIALVGP-TGVGKTTTIAKLAARLKLKGKKVALISADTYRIGA-----------------VEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp SEEEEEEES-TTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHH-----------------HHHHHHHHHHHTEEEEES
T ss_pred CEEEEEECC-CCCchHhHHHHHHHHHhhccccceeecCCCCCccH-----------------HHHHHHHHHHhccccchh
Confidence 478888855 56999999999999999999999999999887432 11110 011122332221
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHhh-hhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECLR-EVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~~-~~~ad~viiv~~~~~~~~~~ 161 (192)
.. .....+.+++.++.+++++||+|+||+++...... ..-+..+. ....+.+++|.++... .+.
T Consensus 63 ~~------------~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~ 129 (196)
T PF00448_consen 63 RT------------ESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QED 129 (196)
T ss_dssp ST------------TSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHH
T ss_pred hc------------chhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHH
Confidence 10 01223445556665554789999999998655332 11222211 1247788888888654 345
Q ss_pred HHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+....+..+..++ .++|+.|.|-.
T Consensus 130 ~~~~~~~~~~~~~--~~lIlTKlDet 153 (196)
T PF00448_consen 130 LEQALAFYEAFGI--DGLILTKLDET 153 (196)
T ss_dssp HHHHHHHHHHSST--CEEEEESTTSS
T ss_pred HHHHHHHhhcccC--ceEEEEeecCC
Confidence 5556665555555 58999999953
No 86
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.30 E-value=2.4e-10 Score=88.51 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=86.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCC-cccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP-HLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
+.+++|+|+ +.+|+||||++..++..+.+.|++|.++++|++.+... .+++.. ..+ .... ..++..+.
T Consensus 32 ~~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~-~~~-------~~~~--~~~~~~~~ 100 (300)
T TIGR00750 32 GNAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDR-TRM-------QRLA--TDPGAFIR 100 (300)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccc-hhh-------hhcc--cCCCceee
Confidence 456777777 88999999999999999999999999999998764221 111110 001 0000 01122221
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDV 162 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~ 162 (192)
+.... .. ..+ ......+++..+....||+||+|+++.... ....+.. +|.++++..+. +-+++
T Consensus 101 ~~~~~------~~-~~~--~~~~~~~~~~~l~~~g~D~viidT~G~~~~-e~~i~~~-----aD~i~vv~~~~--~~~el 163 (300)
T TIGR00750 101 SMPTR------GH-LGG--LSQATRELILLLDAAGYDVIIVETVGVGQS-EVDIANM-----ADTFVVVTIPG--TGDDL 163 (300)
T ss_pred ecCcc------cc-ccc--hhHHHHHHHHHHHhCCCCEEEEeCCCCchh-hhHHHHh-----hceEEEEecCC--ccHHH
Confidence 11100 00 000 012334444444436999999999975433 3334443 88888886554 33444
Q ss_pred HHHHHHhHhcCCceeeEEeccCcc
Q psy9977 163 RKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 163 ~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+...+.+ .+. -+++||.|.
T Consensus 164 ~~~~~~l~~--~~~-ivv~NK~Dl 184 (300)
T TIGR00750 164 QGIKAGLME--IAD-IYVVNKADG 184 (300)
T ss_pred HHHHHHHhh--hcc-EEEEEcccc
Confidence 444443432 222 489999985
No 87
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.29 E-value=1.5e-10 Score=86.39 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=98.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCccc-CCCCC--CccccCCCCcccccCCCCceEEE
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLL-NIENS--DVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
++.|.|+++..++|||+++..|++.|.++|++|.++-- ...+....- +..+. .+.....+...... ..+...+
T Consensus 2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KP--i~~g~~~~~~~~~~~D~~~l~~~~~~~~~~~--~~~p~~~ 77 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKP--VAKGSKETPEGLRNKDALVLQSVSSIELPYE--AVNPIAL 77 (231)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECc--cccCCccCCCCCchHHHHHHHHhcCCCCCHH--hccCeec
Confidence 55799999999999999999999999999999998743 332221000 00010 01000001000000 0000011
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH---HHHHHhhhhcCCeEEEecCCCcccH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI---TVMECLREVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~---~~l~~~~~~~ad~viiv~~~~~~~~ 159 (192)
... . ...........+.+.+.+..++ ++||+||||+.+++..+.. .......+ .---+++|+.....++
T Consensus 78 ~~~----~--a~~~~~~~i~~~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~-~~~pvilV~~~~lg~i 149 (231)
T PRK12374 78 SEE----E--SSVAHSCPINYTLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQ-EQLPVLMVVGIQEGCI 149 (231)
T ss_pred CCC----c--ChHHcCCcCCHHHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHH-hCCCEEEEECCCcChH
Confidence 110 0 0001112222234555556666 7999999999985433221 11111111 1334777778888889
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+.-.++.++..++++.|+|+|+++.
T Consensus 150 n~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 150 NHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 999999999999999999999999864
No 88
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.28 E-value=1.8e-10 Score=86.70 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=95.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC-CcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV-PHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
.+..+|+|+ +-+|+||||+.-.|...|.+.|+||.++-.||.+|-. -.++|-.- .+.. ....+|+.+-
T Consensus 49 G~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi--------RM~~--~~~~~~vFiR 117 (323)
T COG1703 49 GNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI--------RMQR--LAVDPGVFIR 117 (323)
T ss_pred CCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh--------hHHh--hccCCCeEEe
Confidence 456799999 7889999999999999999999999999999887632 11111100 0000 1113444444
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-cHHH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-SIED 161 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-~~~~ 161 (192)
+.. ..... + .-....++.+..+....||+|||.+-+.-..+. ..... +|.++++..|+.. .++.
T Consensus 118 s~~------srG~l--G-GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev-~I~~~-----aDt~~~v~~pg~GD~~Q~ 182 (323)
T COG1703 118 SSP------SRGTL--G-GLSRATREAIKLLDAAGYDVIIVETVGVGQSEV-DIANM-----ADTFLVVMIPGAGDDLQG 182 (323)
T ss_pred ecC------CCccc--h-hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh-HHhhh-----cceEEEEecCCCCcHHHH
Confidence 321 11100 0 122334444444444799999999997666543 34444 9999999998854 5555
Q ss_pred HHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.-+-.+... +++||+|.
T Consensus 183 iK~GimEiaDi------~vINKaD~ 201 (323)
T COG1703 183 IKAGIMEIADI------IVINKADR 201 (323)
T ss_pred HHhhhhhhhhe------eeEeccCh
Confidence 55444434332 88999884
No 89
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.28 E-value=1.3e-10 Score=94.56 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=83.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC--CCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK--GFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~--g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
..++|+|+ |.+|+||||++.+||..+.++ |++|.++++|.++.+....+ .. .....++.+.
T Consensus 349 ~G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQL-------k~---------ya~iLgv~v~ 411 (559)
T PRK12727 349 RGGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL-------HS---------YGRQLGIAVH 411 (559)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHH-------HH---------hhcccCceeE
Confidence 45788888 457999999999999998875 58999999998754211000 00 0001111111
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhhh--hcCCeEEEecCCCccc
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLRE--VQCDGAVLVTTPQAVS 158 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~~--~~ad~viiv~~~~~~~ 158 (192)
. ......+.+.+..+ .+||+||||+++....... ..+..+.. ...+.+++.... +
T Consensus 412 ~----------------a~d~~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts---s 470 (559)
T PRK12727 412 E----------------ADSAESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA---H 470 (559)
T ss_pred e----------------cCcHHHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC---C
Confidence 0 01123455666655 4799999999987543221 11111111 123344444433 4
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
...+..+++.+... +..|+|+||+|-.+
T Consensus 471 ~~Dl~eii~~f~~~--~~~gvILTKlDEt~ 498 (559)
T PRK12727 471 FSDLDEVVRRFAHA--KPQGVVLTKLDETG 498 (559)
T ss_pred hhHHHHHHHHHHhh--CCeEEEEecCcCcc
Confidence 55555666666654 45799999998643
No 90
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.27 E-value=7e-11 Score=90.33 Aligned_cols=148 Identities=21% Similarity=0.183 Sum_probs=97.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCccc-ccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPV-YTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 82 (192)
+++.+|.|+ +-.|+||||....||++|.++|++|++.-+|..+... .+++ .+...-+..++
T Consensus 137 ~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA-----------------iEQL~~w~er~gv~vI 198 (340)
T COG0552 137 KKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA-----------------IEQLEVWGERLGVPVI 198 (340)
T ss_pred CCcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH-----------------HHHHHHHHHHhCCeEE
Confidence 346677777 7778999999999999999999999999999887532 1111 11223456666
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhh----------hhcCCeEEEec
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLR----------EVQCDGAVLVT 152 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~----------~~~ad~viiv~ 152 (192)
... .+ .+......+.+.+.+.++||++|+||.+.+.... +.|..+. ....+.++++.
T Consensus 199 ~~~--~G----------~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~~ap~e~llvl 265 (340)
T COG0552 199 SGK--EG----------ADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDPDAPHEILLVL 265 (340)
T ss_pred ccC--CC----------CCcHHHHHHHHHHHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHhccccCCCCceEEEEE
Confidence 532 11 1223455666666666899999999999886643 4444443 22234466665
Q ss_pred CC--CcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 153 TP--QAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 153 ~~--~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
++ +..++++++.+.+. .++.|+|+.|.|-.
T Consensus 266 DAttGqnal~QAk~F~ea-----v~l~GiIlTKlDgt 297 (340)
T COG0552 266 DATTGQNALSQAKIFNEA-----VGLDGIILTKLDGT 297 (340)
T ss_pred EcccChhHHHHHHHHHHh-----cCCceEEEEecccC
Confidence 55 34456666555543 33678999988843
No 91
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.25 E-value=2.2e-10 Score=91.05 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=82.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHH-HhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGL-KDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~l-a~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
++++| .+.+|+||||++++||..+ ...|++|+++++|.++..... .+ .......++.+...
T Consensus 224 ~vi~l-vGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~e-------QL---------k~yAe~lgvp~~~~- 285 (432)
T PRK12724 224 KVVFF-VGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE-------QL---------KRYADTMGMPFYPV- 285 (432)
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHH-------HH---------HHHHHhcCCCeeeh-
Confidence 44555 5899999999999999876 468999999999998753211 00 00001111111110
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCC--hhHHHHHHHhhh----hcCCeEEEecCCCcccH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTS--DEHITVMECLRE----VQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~--~~~~~~l~~~~~----~~ad~viiv~~~~~~~~ 159 (192)
.....+.+.+. ...||+||||+++... ......+..+.. .....+++|+++. ...
T Consensus 286 ---------------~~~~~l~~~l~---~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt-~~~ 346 (432)
T PRK12724 286 ---------------KDIKKFKETLA---RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST-SSY 346 (432)
T ss_pred ---------------HHHHHHHHHHH---hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC-CCH
Confidence 01112222222 2689999999987643 222222222211 1133567777664 344
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
+.+....+.++..+ +.++|+.|.|-.+
T Consensus 347 ~~~~~~~~~f~~~~--~~glIlTKLDEt~ 373 (432)
T PRK12724 347 HHTLTVLKAYESLN--YRRILLTKLDEAD 373 (432)
T ss_pred HHHHHHHHHhcCCC--CCEEEEEcccCCC
Confidence 55666777775554 4689999998643
No 92
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=99.24 E-value=3.7e-11 Score=91.34 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=74.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccc-cCCCCcccccCCCCceEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQ-CPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 84 (192)
|++|+|.+.+ |+||||++.+|+..|.++| +|.+|+.|.... . ..+..+... ...+............ ++.
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~-~----~~~g~Ds~~~~~aGa~~v~~~s~~~~-~~~- 71 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTER-L----NPDGTDTGRHFDAGADVVYGLTDGEW-VAS- 71 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCc-C----CCCCCCcHHHHHCCCcEEEEecCCeE-EEE-
Confidence 5789999875 9999999999999999999 899999997531 1 111111111 1111111110011111 110
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCC-eEEEecCCCcccHHHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCD-GAVLVTTPQAVSIEDVR 163 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad-~viiv~~~~~~~~~~~~ 163 (192)
.. ...+.+++..+. ..+|+||+|+......+.......- .+| .++++..|+...+..+.
T Consensus 72 -------------~~---~~~l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~---~~~~~~l~p~~~s~~d~~~lv 131 (274)
T PRK14493 72 -------------GR---DRSLDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMD---ADSDVVARAPTAADLDTEDLV 131 (274)
T ss_pred -------------ec---CCCHHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecc---cCCcEEEecCCCCccCHHHHH
Confidence 00 112566666665 5899999999987653221111111 266 78888888877743333
No 93
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.24 E-value=1.8e-10 Score=92.81 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=86.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH--hCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK--DKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la--~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
.++++|+++ +|+||||++++||.+++ +.|++|.+|++|+++.+... .+. .+. ...++.+..
T Consensus 221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~e-------qL~----~~a-----~~~~vp~~~ 283 (424)
T PRK05703 221 GGVVALVGP-TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVE-------QLK----TYA-----KIMGIPVEV 283 (424)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHH-------HHH----HHH-----HHhCCceEc
Confidence 467888855 89999999999999998 46899999999987532100 000 000 001111110
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHhhh-h-cCCeEEEecCCCcccH
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECLRE-V-QCDGAVLVTTPQAVSI 159 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~~~-~-~ad~viiv~~~~~~~~ 159 (192)
. .....+...+..+ ..||+||||+++...... ...+..+.. . ....+++|+++ ....
T Consensus 284 ~----------------~~~~~l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a-~~~~ 344 (424)
T PRK05703 284 V----------------YDPKELAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSA-TTKY 344 (424)
T ss_pred c----------------CCHHhHHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEEC-CCCH
Confidence 0 0112344455554 479999999997654432 122333221 0 12345555555 3455
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
..+.++++.++..++ .++|++++|-.+
T Consensus 345 ~~l~~~~~~f~~~~~--~~vI~TKlDet~ 371 (424)
T PRK05703 345 EDLKDIYKHFSRLPL--DGLIFTKLDETS 371 (424)
T ss_pred HHHHHHHHHhCCCCC--CEEEEecccccc
Confidence 677777777776554 589999998754
No 94
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.23 E-value=1.1e-09 Score=85.25 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=89.3
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCC-cccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP-HLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
+.+.+|+|+ +..|+||||++..|+..+.+.|++|.++..|++.+... .++|-... .... ...++..+.
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r--------~~~~--~~~~~~~~r 122 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTR--------MERL--SRHPNAFIR 122 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhH--------HHhh--cCCCCeEEE
Confidence 355677777 55889999999999999999999999999998864210 01110000 0000 111222222
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecC-CCcccHHH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTT-PQAVSIED 161 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~-~~~~~~~~ 161 (192)
+.+.... .......+.+.+..+....||+||+|+++...... .... .+|.+++|.. +....+..
T Consensus 123 ~~~~~~~---------l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~-~i~~-----~aD~vlvv~~p~~gd~iq~ 187 (332)
T PRK09435 123 PSPSSGT---------LGGVARKTRETMLLCEAAGYDVILVETVGVGQSET-AVAG-----MVDFFLLLQLPGAGDELQG 187 (332)
T ss_pred ecCCccc---------ccchHHHHHHHHHHHhccCCCEEEEECCCCccchh-HHHH-----hCCEEEEEecCCchHHHHH
Confidence 2111000 00123345555555554689999999998876554 2333 3999999986 44555555
Q ss_pred HHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.... .++... -+|+||.|-
T Consensus 188 ~k~g--i~E~aD----IiVVNKaDl 206 (332)
T PRK09435 188 IKKG--IMELAD----LIVINKADG 206 (332)
T ss_pred HHhh--hhhhhh----eEEeehhcc
Confidence 4431 233322 389999984
No 95
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.21 E-value=4e-10 Score=91.83 Aligned_cols=142 Identities=19% Similarity=0.298 Sum_probs=85.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
|+.|.|+++++|+||||++++|+++|+++|++|..+...+... +..+.....+. ...+++..
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~---------d~~~~~~~~g~------~~~~ld~~--- 64 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYI---------DPAYHTAATGR------PSRNLDSW--- 64 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcc---------cHHHHHHHhCC------CcccCCce---
Confidence 6789999999999999999999999999999999998743210 00000000000 01111100
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh---------hHHHHHHHhhhhcCCeEEEecCCCc
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD---------EHITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~---------~~~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
....+.+.+.+..++ ++||++||+...++.+ ........+ .+ -+|+|++.+.
T Consensus 65 --------------~~~~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l---~~-pviLV~~~~~ 125 (451)
T PRK01077 65 --------------MMGEELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLL---GA-PVVLVVDASG 125 (451)
T ss_pred --------------eCCHHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHh---CC-CEEEEECCch
Confidence 012356777777776 7899999998855432 112233322 23 3566666654
Q ss_pred cc--HHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 157 VS--IEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 157 ~~--~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
.+ +..+...+..+ ..++++.|+|+|++.
T Consensus 126 ~~~~~a~l~~~~~~~-~~~i~i~GvI~N~v~ 155 (451)
T PRK01077 126 MAQSAAALVLGFATF-DPDVRIAGVILNRVG 155 (451)
T ss_pred HHHHHHHHHHHHHHh-CCCCCEEEEEEECCC
Confidence 33 33333333333 237889999999985
No 96
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.21 E-value=6.7e-10 Score=88.23 Aligned_cols=146 Identities=21% Similarity=0.232 Sum_probs=87.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHh----CCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKD----KGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLA 80 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~----~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (192)
.+++|+++ |..|+||||+++.||..+.. .|++|.++++|+++.+....+ ..+.+ .-++.
T Consensus 173 ~~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL-----------~~~a~-----~lgvp 235 (388)
T PRK12723 173 KKRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----------QTYGD-----IMGIP 235 (388)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH-----------HHHhh-----cCCcc
Confidence 34567766 66699999999999999884 589999999998765331100 00000 01111
Q ss_pred EEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhhh-hcCC-eEEEecCCCc
Q psy9977 81 VMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLRE-VQCD-GAVLVTTPQA 156 (192)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~~-~~ad-~viiv~~~~~ 156 (192)
+... .....+.+.+..+ .+||+||||+++....... .-+..+.. ...+ .+++|.++..
T Consensus 236 v~~~----------------~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 236 VKAI----------------ESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred eEee----------------CcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 1100 1123355555555 4899999999987653321 11222211 1223 5778887754
Q ss_pred ccHHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 157 VSIEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
. .+.+.+++..+... ++.++|+.|.|-.+
T Consensus 298 ~-~~~~~~~~~~~~~~--~~~~~I~TKlDet~ 326 (388)
T PRK12723 298 K-TSDVKEIFHQFSPF--SYKTVIFTKLDETT 326 (388)
T ss_pred C-HHHHHHHHHHhcCC--CCCEEEEEeccCCC
Confidence 4 55555666666654 45689999998644
No 97
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.18 E-value=8.8e-10 Score=83.59 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=90.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
+..+++|+ +..|+||||+...++..+..+|++|.++++|.++.+... .+.... ...++.+...
T Consensus 74 ~~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~--------------ql~~~~--~~~~~~~~~~ 136 (270)
T PRK06731 74 EVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQ--------------QLQDYV--KTIGFEVIAV 136 (270)
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH--------------HHHHHh--hhcCceEEec
Confidence 44678888 559999999999999999989999999999977522110 111100 0111221110
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCCh--hHHHHHHHh-hhhcCCeEEEecCCCcccHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSD--EHITVMECL-REVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~--~~~~~l~~~-~~~~ad~viiv~~~~~~~~~ 160 (192)
.....+.+.+..++ ..+||+||||+++.... ....-+..+ ...+.|.+++|+++.. .-+
T Consensus 137 ----------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~ 199 (270)
T PRK06731 137 ----------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSK 199 (270)
T ss_pred ----------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHH
Confidence 11233455555554 24799999999988742 222222222 1234677888887743 334
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
.+...++.++. +++.++|+.|+|-.+
T Consensus 200 d~~~~~~~f~~--~~~~~~I~TKlDet~ 225 (270)
T PRK06731 200 DMIEIITNFKD--IHIDGIVFTKFDETA 225 (270)
T ss_pred HHHHHHHHhCC--CCCCEEEEEeecCCC
Confidence 45556666665 566799999999654
No 98
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.16 E-value=1.1e-10 Score=86.62 Aligned_cols=150 Identities=23% Similarity=0.241 Sum_probs=82.8
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCC-cccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP-HLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
++..+|+|+ +.+|+||||+.-.|+..+.++|++|.++-.||.+|-.- .++|-.-. ... ....+++++-
T Consensus 27 g~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiR--------M~~--~~~d~~vfIR 95 (266)
T PF03308_consen 27 GRAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIR--------MQE--LSRDPGVFIR 95 (266)
T ss_dssp T-SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGG--------CHH--HHTSTTEEEE
T ss_pred CCceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHH--------hcC--cCCCCCEEEe
Confidence 456789998 77889999999999999999999999999998866321 22221100 000 1124566655
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-cHHH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-SIED 161 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-~~~~ 161 (192)
+....-.. ---.....+.+..+....||+|||.|-+.-..+. ..... +|.+++|..|+.. .++.
T Consensus 96 S~atRG~l---------GGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-~I~~~-----aD~~v~v~~Pg~GD~iQ~ 160 (266)
T PF03308_consen 96 SMATRGSL---------GGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV-DIADM-----ADTVVLVLVPGLGDEIQA 160 (266)
T ss_dssp EE---SSH---------HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-HHHTT-----SSEEEEEEESSTCCCCCT
T ss_pred ecCcCCCC---------CCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-HHHHh-----cCeEEEEecCCCccHHHH
Confidence 43211000 0112334444444443699999999997665543 34444 9999999888743 4444
Q ss_pred HHHHHHHhHhcCCceeeEEeccCc
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
++.-+-.+.. -+|+||.|
T Consensus 161 ~KaGimEiaD------i~vVNKaD 178 (266)
T PF03308_consen 161 IKAGIMEIAD------IFVVNKAD 178 (266)
T ss_dssp B-TTHHHH-S------EEEEE--S
T ss_pred Hhhhhhhhcc------EEEEeCCC
Confidence 4433333322 26666665
No 99
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.15 E-value=1.5e-09 Score=92.60 Aligned_cols=140 Identities=22% Similarity=0.248 Sum_probs=89.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
++|.|.|.++..++|||+++..|+++|.++|++|.++--..+.| + . ...... .+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p-~---------~-------~~~~~~-------~~-- 54 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPP-L---------T-------MSEVEA-------LL-- 54 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCC-C---------C-------HHHHHH-------HH--
Confidence 36789999999999999999999999999999999987332210 0 0 000000 00
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh------HHHHHHHhhhhcCCeEEEecCCCccc
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE------HITVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~------~~~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
... ......+.+.+.+..+. ++||++|+|++...... .......+ .+-+++|+.++..+
T Consensus 55 ---~~~-------~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L----~~pVILV~~~~~~s 119 (684)
T PRK05632 55 ---ASG-------QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL----GAEVVLVSSGGNDT 119 (684)
T ss_pred ---hcc-------CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHh----CCCEEEEECCCCCC
Confidence 000 00122344455555566 79999999999755432 11122222 56788889888777
Q ss_pred HH----HHHHHHHHhH-hcCCceeeEEeccCc
Q psy9977 159 IE----DVRKEITFCK-KTNIKILGLIENMSG 185 (192)
Q Consensus 159 ~~----~~~~~~~~l~-~~~~~~~g~v~N~~~ 185 (192)
+. .+....+.+. ..+.++.|+|+|+++
T Consensus 120 i~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~ 151 (684)
T PRK05632 120 PEELAERIELAASSFGGAKNANILGVIINKLN 151 (684)
T ss_pred hHHHHHHHHHHHHHhccCCCCcEEEEEEECCC
Confidence 54 4444555555 567899999999943
No 100
>KOG0780|consensus
Probab=99.14 E-value=1e-09 Score=85.23 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=92.3
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
.++.+|.|+ +-.|+||||....+|+++.++|++|++|=+|..+++...-+.... . ..++-+.
T Consensus 99 ~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA-------------~---k~~iP~y- 160 (483)
T KOG0780|consen 99 GKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNA-------------T---KARVPFY- 160 (483)
T ss_pred CCCcEEEEE-eccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHh-------------H---hhCCeeE-
Confidence 456677777 666799999999999999999999999999988865421111000 0 0011111
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH---HHHHhhhhcCCeEEEecCCCcccHH
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT---VMECLREVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~---~l~~~~~~~ad~viiv~~~~~~~~~ 160 (192)
+ +..+ .+......+-++.+++++||+||+|+++...-.... ......+...|.+|+|.++......
T Consensus 161 -g----syte------~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 161 -G----SYTE------ADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred -e----cccc------cchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence 1 0000 012233445555555699999999999876543321 1111113468999999998754322
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccCCC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYTCP 189 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~~~ 189 (192)
.. ....++. .+.+-++|+.+.|-+..
T Consensus 230 e~--Qa~aFk~-~vdvg~vIlTKlDGhak 255 (483)
T KOG0780|consen 230 EA--QARAFKE-TVDVGAVILTKLDGHAK 255 (483)
T ss_pred HH--HHHHHHH-hhccceEEEEecccCCC
Confidence 21 1222222 33456899999886554
No 101
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.13 E-value=8.2e-10 Score=90.38 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=89.7
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC---C--CCcc-ccCCC------CcccccCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE---N--SDVH-QCPEG------WVPVYTDAS 76 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~---~--~~~~-~~~~~------~~~~~~~~~ 76 (192)
|+|+|+..++|||++++.|++.|.++|++|..+-.-. -+.......+ . .... ....+ ..+......
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~--~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~ 78 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQN--MSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPK 78 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcc--cccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcC
Confidence 5789999999999999999999999999998765531 1111111111 1 1111 01111 111111110
Q ss_pred --CceEEEeeccccccCCcc---cccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh--------HHHHHHHhhhh
Q psy9977 77 --QTLAVMSIGFLLKNRDDA---IIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE--------HITVMECLREV 143 (192)
Q Consensus 77 --~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~--------~~~~l~~~~~~ 143 (192)
....++-.+.... +..+ .........+.+.+.+..++ .+||+||||+++++... .......+
T Consensus 79 ~~~~s~~i~~g~~~~-~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l--- 153 (475)
T TIGR00313 79 GNFTSQVIVHGRAVG-DMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELA--- 153 (475)
T ss_pred CCCcCcEEEcCcccC-cCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHh---
Confidence 0111121121110 1111 00011233455666666776 78999999999865431 11112122
Q ss_pred cCCeEEEecCCCcc-cHHHHHHHHHHhHhc-CCceeeEEeccCcc
Q psy9977 144 QCDGAVLVTTPQAV-SIEDVRKEITFCKKT-NIKILGLIENMSGY 186 (192)
Q Consensus 144 ~ad~viiv~~~~~~-~~~~~~~~~~~l~~~-~~~~~g~v~N~~~~ 186 (192)
.++.+ +|++.+.. .+..+..+++.++.. +.++.|+|+|++..
T Consensus 154 ~apVI-LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~ 197 (475)
T TIGR00313 154 NADAI-LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRG 197 (475)
T ss_pred CCCEE-EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCC
Confidence 36654 44555544 445666666666543 36789999999874
No 102
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.13 E-value=3.4e-10 Score=82.60 Aligned_cols=161 Identities=20% Similarity=0.277 Sum_probs=94.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
|.|.|++...++|||+++..|+++|.++|.+|.++--=.+... ..++..+.....+...... ......+
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~-----~d~d~~~~~~~~~~~~~~~--~~~~~~~---- 69 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPE-----DDEDAELIRELFGLSEPPD--DPSPYTF---- 69 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCC-----CSSHHHHHHHHCCTCCCHH--HHECEEE----
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCC-----CCchHHHHHHHhCCCcccc--ccccccc----
Confidence 5789999999999999999999999999999998754322211 0000010000000000000 0000001
Q ss_pred ccccCCcccccCC-chhHHHHHHH-HHhhcCCCCcEEEEeCCCCCCh------hHHHHHHHhhhhcCCeEEEecCCCccc
Q psy9977 87 LLKNRDDAIIWRG-PKKTAMIRQI-INDVCWKDVDYLIIDTPPGTSD------EHITVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 87 ~~~~~~~~~~~~~-~~~~~~l~~~-l~~l~~~~~D~IiiD~~~~~~~------~~~~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
..+........ ......++++ +..++ +++|++||++.++... ........+ .+ -+|+|+..+..+
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L---~a-~vIlV~~~~~g~ 142 (199)
T PF13500_consen 70 --DEPASPHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKAL---GA-PVILVASGRLGT 142 (199)
T ss_dssp --SSSS-HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHH---T--EEEEEEESSTTH
T ss_pred --CcccCHHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHc---CC-CEEEEeCCCCCC
Confidence 11100000000 0111124454 35666 7999999999976542 223344443 24 478888888889
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
++++...++.++..|.++.|+|+|++.
T Consensus 143 i~~~l~~~~~~~~~g~~v~GvI~N~~~ 169 (199)
T PF13500_consen 143 INHTLLTIEALKQRGIRVLGVILNRVP 169 (199)
T ss_dssp HHHHHHHHHHHHCTTS-EEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 999999999999999999999999964
No 103
>PRK00784 cobyric acid synthase; Provisional
Probab=99.11 E-value=1.7e-09 Score=88.97 Aligned_cols=172 Identities=12% Similarity=0.162 Sum_probs=91.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC---CC--C-ccccCCCCcccccCCCCc
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE---NS--D-VHQCPEGWVPVYTDASQT 78 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~ 78 (192)
++|.|.|+++..|+|||++++.|+++|.++|++|..+-. .+.+.....+.+ .. . +........+. ....-
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~--~~i~P 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPS--VDMNP 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCch--hccCC
Confidence 367899999999999999999999999999999987643 211111111110 00 0 00000010000 00000
Q ss_pred eEEEeecc------ccccCCcc-----cccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh--------HHHHHHH
Q psy9977 79 LAVMSIGF------LLKNRDDA-----IIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE--------HITVMEC 139 (192)
Q Consensus 79 l~~~~~~~------~~~~~~~~-----~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~--------~~~~l~~ 139 (192)
..+.+... ....+... .........+.+.+.+..+. ++||++||+..+++... ....+..
T Consensus 77 ~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~ 155 (488)
T PRK00784 77 VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEA 155 (488)
T ss_pred EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHHHHH
Confidence 11100000 00000000 00011233455666666666 79999999987444311 1222222
Q ss_pred hhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHh-cCCceeeEEeccCc
Q psy9977 140 LREVQCDGAVLVTTPQAV-SIEDVRKEITFCKK-TNIKILGLIENMSG 185 (192)
Q Consensus 140 ~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~-~~~~~~g~v~N~~~ 185 (192)
+ .+ -+|+|++.... ++..+..+++.+.. .+.++.|+|+|++.
T Consensus 156 l---~~-PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~ 199 (488)
T PRK00784 156 A---DA-PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFR 199 (488)
T ss_pred c---CC-CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCC
Confidence 2 23 35666666554 57777767677763 35789999999987
No 104
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.09 E-value=7e-09 Score=70.89 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=77.1
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecccccc
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLKN 90 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (192)
|..++| +|||+++..|+..|.++|.+|.++....+
T Consensus 4 ~~~~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-------------------------------------------- 38 (134)
T cd03109 4 FGTGTD-IGKTVATAILARALKEKGYRVAPLKPVQT-------------------------------------------- 38 (134)
T ss_pred EeCCCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC--------------------------------------------
Confidence 344555 99999999999999999999999876643
Q ss_pred CCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh------hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHH
Q psy9977 91 RDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD------EHITVMECLREVQCDGAVLVTTPQAVSIEDVRK 164 (192)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~------~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~ 164 (192)
+|++++++++++.. .....+..+ ---+++|+.++..+++++..
T Consensus 39 ---------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~----~~~vllV~~~~~g~i~~a~~ 87 (134)
T cd03109 39 ---------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKEL----NLPAILVTSAGLGSINHAFL 87 (134)
T ss_pred ---------------------------CCEEEEECCCccccCCCCCCCHHHHHHHh----CCCEEEEEcCCCCcHhHHHH
Confidence 58888888765431 112233332 22378899999889999999
Q ss_pred HHHHhHhcCCceeeEEeccCcc
Q psy9977 165 EITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 165 ~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.++.++..|+.+.+++.|+...
T Consensus 88 ~~~~l~~~g~~i~gvi~N~~~~ 109 (134)
T cd03109 88 TIEAARIKGIILNGVLGNVIVE 109 (134)
T ss_pred HHHHHHhcCCceeEEEEccCCC
Confidence 9999999999999999998764
No 105
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.07 E-value=2.6e-09 Score=90.68 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=91.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH-hCC-CeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK-DKG-FKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g-~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
.++|+|+ |-.|+||||+...||..+. +.| ++|.++++|.++.+... .+... ....++.+..
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~e--------------QL~~~--a~~~gvpv~~ 247 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALE--------------QLRIY--GRILGVPVHA 247 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHH--------------HHHHH--HHhCCCCccc
Confidence 5788888 6667999999999999885 566 69999999977643210 00000 0011111100
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh--HHHHHHHhh-hhcCCeEEEecCCCcccHH
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE--HITVMECLR-EVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~--~~~~l~~~~-~~~ad~viiv~~~~~~~~~ 160 (192)
. .+.+.+.+.+..++ +||+||||+++..... ....+..+. ....+.+++|+++. ...+
T Consensus 248 -----------~-----~~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt-~~~~ 308 (767)
T PRK14723 248 -----------V-----KDAADLRFALAALG--DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAA-SHGD 308 (767)
T ss_pred -----------c-----CCHHHHHHHHHHhc--CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCC-CcHH
Confidence 0 12234666666664 8899999999854322 122222221 12356788888775 3556
Q ss_pred HHHHHHHHhHhc-CCceeeEEeccCccCC
Q psy9977 161 DVRKEITFCKKT-NIKILGLIENMSGYTC 188 (192)
Q Consensus 161 ~~~~~~~~l~~~-~~~~~g~v~N~~~~~~ 188 (192)
.+.++++.++.. +.++.|+|+.|.|-.+
T Consensus 309 ~l~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 309 TLNEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred HHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 677777777654 4467899999999644
No 106
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1e-09 Score=76.67 Aligned_cols=110 Identities=25% Similarity=0.235 Sum_probs=75.8
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCccc-ccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPV-YTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 82 (192)
+++.+|.|+ +-+|+||||+|..|...|.++|++|.++|.|.-+.+++.-+|.......+........ ..-...|+-++
T Consensus 21 ~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~ivi 99 (197)
T COG0529 21 QKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVI 99 (197)
T ss_pred CCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEE
Confidence 344566666 7788999999999999999999999999999999999988888777533322222221 11124566666
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCC
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPP 127 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~ 127 (192)
.+...+.. ...+..++++.. +.|=-|.+|+|-
T Consensus 100 va~ISP~r----------~~R~~aR~~~~~---~~FiEVyV~~pl 131 (197)
T COG0529 100 VAFISPYR----------EDRQMARELLGE---GEFIEVYVDTPL 131 (197)
T ss_pred EEeeCccH----------HHHHHHHHHhCc---CceEEEEeCCCH
Confidence 55443333 344556666553 567779999984
No 107
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.95 E-value=1.8e-09 Score=82.87 Aligned_cols=43 Identities=30% Similarity=0.340 Sum_probs=36.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC-C-CeEEEEeeCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK-G-FKVGILDIDLCGP 48 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g-~~vlliD~d~~~~ 48 (192)
.+++|+|+|+ +|+||||+++.||.+++.+ | ++|.+|++|+++.
T Consensus 193 ~~~vi~~vGp-tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVGP-TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4568888855 8999999999999999986 5 9999999998753
No 108
>KOG1532|consensus
Probab=98.83 E-value=3.2e-08 Score=73.89 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=94.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
+++.++-|..|+||||....|-.++.+++.+-.+|++||.-..++.-...+-.....+....++.-. .+|=.+.+
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L--GPNGgI~T--- 93 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL--GPNGGIVT--- 93 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC--CCCcchhh---
Confidence 4444444889999999999999999999999999999988766655444333222111111111100 00000000
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH-----HHHHhhhhcCCeEEEecCCCcc-c--
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT-----VMECLREVQCDGAVLVTTPQAV-S-- 158 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~-----~l~~~~~~~ad~viiv~~~~~~-~-- 158 (192)
.. . + .......+-++++... +++||+|||+|+-++...|. ....+.......++.|++.... +
T Consensus 94 --sL--N-L---F~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~ 164 (366)
T KOG1532|consen 94 --SL--N-L---FATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPT 164 (366)
T ss_pred --hH--H-H---HHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCch
Confidence 00 0 0 0011233445666555 78999999999865443332 1222222234444445444322 2
Q ss_pred --HHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 159 --IEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 159 --~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
++.+...-..|.+..+|.+ +++|+.|.
T Consensus 165 tFMSNMlYAcSilyktklp~i-vvfNK~Dv 193 (366)
T KOG1532|consen 165 TFMSNMLYACSILYKTKLPFI-VVFNKTDV 193 (366)
T ss_pred hHHHHHHHHHHHHHhccCCeE-EEEecccc
Confidence 5566666777788899887 99999985
No 109
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.82 E-value=1.7e-07 Score=76.43 Aligned_cols=140 Identities=25% Similarity=0.349 Sum_probs=80.1
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecccc
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLL 88 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 88 (192)
|.|+++.+|+|||++++.|+++|+++|++|..+-.- +. . . +..+.....+. ...+++.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g---~d---~--~-D~~~~~~~~g~------~~~~ld~------- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG---PD---Y--I-DPMFHTQATGR------PSRNLDS------- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC---CC---C--C-CHHHHHHHhCC------chhhCCc-------
Confidence 789999999999999999999999999999988642 11 0 0 00000000000 0001110
Q ss_pred ccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh---------hHHHHHHHhhhhcCCeEEEecCCCcccH
Q psy9977 89 KNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD---------EHITVMECLREVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~---------~~~~~l~~~~~~~ad~viiv~~~~~~~~ 159 (192)
.. ...+.+.+.+..+. +++|++||+...++-+ ........+ .+ -+|+|++.... .
T Consensus 60 -----~~-----~~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l---~~-pVILV~~~~~~-~ 123 (449)
T TIGR00379 60 -----FF-----MSEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKAL---DA-PIVLVMNCQRL-S 123 (449)
T ss_pred -----cc-----CCHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHh---CC-CEEEEECCchH-H
Confidence 00 13456777777776 7899999999855431 122233322 23 35556655421 1
Q ss_pred HHHHHHHHHh--HhcCCceeeEEeccCcc
Q psy9977 160 EDVRKEITFC--KKTNIKILGLIENMSGY 186 (192)
Q Consensus 160 ~~~~~~~~~l--~~~~~~~~g~v~N~~~~ 186 (192)
..+..+...+ ...++++.|+|+|++..
T Consensus 124 ~t~~al~~~~~~~~~~i~i~GvIlN~v~~ 152 (449)
T TIGR00379 124 RSAAAIVLGYRSFDPGVKLKGVILNRVGS 152 (449)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEECCCC
Confidence 2222222222 13478899999999863
No 110
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.82 E-value=9.7e-08 Score=75.53 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=82.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHh-CC-CeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccc-cCCCCceEEE
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKD-KG-FKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVY-TDASQTLAVM 82 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g-~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 82 (192)
..+++|+ |-.|+||||+++.||..+.. .| ++|.++.+|..+.+.. +.+. .....++.+.
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~-----------------EqL~~~a~~~gv~~~ 198 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGH-----------------EQLRIFGKILGVPVH 198 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHH-----------------HHHHHHHHHcCCceE
Confidence 4577766 67789999999999998875 56 6999999998754221 1100 0001111111
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh--hHHHHHHHhhh-hcCCeEEEecCCCcccH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD--EHITVMECLRE-VQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~--~~~~~l~~~~~-~~ad~viiv~~~~~~~~ 159 (192)
.. .....+...+..+ .++|+|+||+++.... .....+..+.. ......++|+++.. ..
T Consensus 199 ~~----------------~~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~ 259 (374)
T PRK14722 199 AV----------------KDGGDLQLALAEL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HG 259 (374)
T ss_pred ec----------------CCcccHHHHHHHh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-Ch
Confidence 00 0111233444444 4789999999986632 22223333211 12345677777643 44
Q ss_pred HHHHHHHHHhHhcC-------CceeeEEeccCccCC
Q psy9977 160 EDVRKEITFCKKTN-------IKILGLIENMSGYTC 188 (192)
Q Consensus 160 ~~~~~~~~~l~~~~-------~~~~g~v~N~~~~~~ 188 (192)
+.+...++.+.... .++.|+|+.|.|-.+
T Consensus 260 ~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 260 DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 44445555554432 246799999998543
No 111
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.81 E-value=1.1e-07 Score=77.45 Aligned_cols=144 Identities=22% Similarity=0.215 Sum_probs=82.7
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
.++|+.+.|+++..|+||||+++.|+++|.++ |..+-+.+.. . +. .+....+
T Consensus 235 ~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~-----------i---d~-----------~p~~~~~ 286 (476)
T PRK06278 235 RNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDV-----------R---DI-----------VPSLYLL 286 (476)
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCCh-----------h---hc-----------CCcceec
Confidence 34678899999999999999999999999975 5555432110 0 00 0000100
Q ss_pred eeccccccCCcccc--cCC-chhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH---------HHHHHHhhhhcCCeEEE
Q psy9977 83 SIGFLLKNRDDAII--WRG-PKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH---------ITVMECLREVQCDGAVL 150 (192)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~-~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~---------~~~l~~~~~~~ad~vii 150 (192)
.. +.+|..+.. ... ....+.++. ++...+|++||+...++-+.. ......+ ---+|+
T Consensus 287 ~~---~~sp~~a~n~~~d~~~~~~~~~~~----~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l----~~PVIL 355 (476)
T PRK06278 287 RE---KMTKYNSIKIGDRGWSDVEEFLEF----VKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL----GFPVYI 355 (476)
T ss_pred cc---ccCChHHHhhcCCcccCHHHHHHH----HHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHh----CCCEEE
Confidence 00 000000000 000 111223333 221478999999987654431 1122222 234788
Q ss_pred ecCCCcccHHHHHHH----HHHhHhcCCceeeEEeccCc
Q psy9977 151 VTTPQAVSIEDVRKE----ITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 151 v~~~~~~~~~~~~~~----~~~l~~~~~~~~g~v~N~~~ 185 (192)
|++....++..+... .+.+++.++++.|+|+|++.
T Consensus 356 V~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~ 394 (476)
T PRK06278 356 VSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVY 394 (476)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 888888886655543 45566678999999999987
No 112
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.80 E-value=7.3e-08 Score=76.03 Aligned_cols=142 Identities=21% Similarity=0.199 Sum_probs=91.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHH--hCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccc-cCCCCceEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLK--DKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVY-TDASQTLAV 81 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la--~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 81 (192)
+.++|+++|+. |+||||..+.||..+. ...++|.+|-.|..+=+. .+++. +...-++.+
T Consensus 202 ~~~vi~LVGPT-GVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA-----------------~EQLk~Ya~im~vp~ 263 (407)
T COG1419 202 QKRVIALVGPT-GVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA-----------------VEQLKTYADIMGVPL 263 (407)
T ss_pred cCcEEEEECCC-CCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH-----------------HHHHHHHHHHhCCce
Confidence 47889999555 6999999999999999 466899999999876332 11110 000111111
Q ss_pred EeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhh-hhcCCeEEEecCCCccc
Q psy9977 82 MSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLR-EVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~-~~~ad~viiv~~~~~~~ 158 (192)
. .. ...+.+...+..++ ++|+|+||+.+....... .-+..+. ..+...+.+|.+. ...
T Consensus 264 ~-----------vv-----~~~~el~~ai~~l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsa-t~K 324 (407)
T COG1419 264 E-----------VV-----YSPKELAEAIEALR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSA-TTK 324 (407)
T ss_pred E-----------Ee-----cCHHHHHHHHHHhh--cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEec-Ccc
Confidence 1 11 23455777777775 889999999975543322 2222222 2234456666655 456
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
-+.+..+++.++..++ .|+|+.+.|
T Consensus 325 ~~dlkei~~~f~~~~i--~~~I~TKlD 349 (407)
T COG1419 325 YEDLKEIIKQFSLFPI--DGLIFTKLD 349 (407)
T ss_pred hHHHHHHHHHhccCCc--ceeEEEccc
Confidence 6788889998888765 589999988
No 113
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.79 E-value=3.1e-07 Score=72.28 Aligned_cols=141 Identities=20% Similarity=0.204 Sum_probs=80.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
...++++++++. +||||+++-||..+-++|++|.++|+|+-++.+. -.....+............-.....++ .
T Consensus 72 ~~~~vmvvG~vD-SGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~---pPg~ISL~~~~s~~~~L~~l~~~~~~F--v 145 (398)
T COG1341 72 KVGVVMVVGPVD-SGKSTLTTYLANKLLARGRKVAIIDADVGQSEIG---PPGFISLAFPESPVISLSELEPFTLYF--V 145 (398)
T ss_pred CCcEEEEECCcC-cCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccC---CCceEEeecccCCCCCHHHcCccceEE--E
Confidence 456788886664 9999999999999999999999999998887541 111111111111111111111222222 2
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh-hHHHHHHHh-hhhcCCeEEEecCCCccc
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD-EHITVMECL-REVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~-~~~~~l~~~-~~~~ad~viiv~~~~~~~ 158 (192)
|...+... .......+.++.+.++ +.-|+|||||++=... ........+ ....+|.++.+-.....+
T Consensus 146 G~isP~~~------~~~~i~~v~rL~~~a~-~~~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~~~~~ 214 (398)
T COG1341 146 GSISPQGF------PGRYIAGVARLVDLAK-KEADFILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERANELS 214 (398)
T ss_pred eccCCCCC------hHHHHHHHHHHHHHhh-ccCCEEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEeccccccc
Confidence 22222211 1234566777777776 4579999999975544 222222221 123567777666654433
No 114
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.70 E-value=9.9e-09 Score=76.77 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccccccCCc
Q psy9977 14 GKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLKNRDD 93 (192)
Q Consensus 14 ~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (192)
|-.|+||||.+.++..++...|++|.+|++||....+++-...+-.++.. ..+.... ..+ .|..
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~----~~evm~~----~~L--------GPNG 66 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLIS----VEEVMEE----YGL--------GPNG 66 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT------HHHHHTT-----T----------HHH
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhh----hhhhhhh----cCc--------CCcH
Confidence 45689999999999999999999999999999876554432222211111 0111110 011 1111
Q ss_pred ccccCC---chhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH-----HHHHhhhhcCCeEEEecCCCcc-c----HH
Q psy9977 94 AIIWRG---PKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT-----VMECLREVQCDGAVLVTTPQAV-S----IE 160 (192)
Q Consensus 94 ~~~~~~---~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~-----~l~~~~~~~ad~viiv~~~~~~-~----~~ 160 (192)
+..... ....+.+.+.++... -+|+|+|+|+-.+..... .+..+.....-.++..++.... + +.
T Consensus 67 al~~~me~l~~~~d~l~~~i~~~~---~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s 143 (238)
T PF03029_consen 67 ALIYCMEYLEENIDWLDEEIEKYE---DDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS 143 (238)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHH----SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---CcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH
Confidence 111111 111233344443332 299999999876543322 2222211012234444444322 2 22
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+......+-+.++|.+ .|+||.|..
T Consensus 144 ~~L~s~s~~~~~~lP~v-nvlsK~Dl~ 169 (238)
T PF03029_consen 144 SLLLSLSIMLRLELPHV-NVLSKIDLL 169 (238)
T ss_dssp HHHHHHHHHHHHTSEEE-EEE--GGGS
T ss_pred HHHHHHHHHhhCCCCEE-EeeeccCcc
Confidence 22233333456788877 999999863
No 115
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.64 E-value=8.5e-07 Score=71.68 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=83.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
|+.|.|.++..|+||||++..|+++|.++|.+|-.+-.-+..- + ..+.....+ ....+++
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--------D-~~~~~~~~g------~~~~nld----- 60 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--------D-PSHHEAVAG------RPSRTLD----- 60 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--------C-HHHHHHHhC------CCcccCC-----
Confidence 4579999999999999999999999999999997776532210 0 001000000 0011111
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH---HHHHHHhhhhcCCeEEEecCCCcccHHHH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH---ITVMECLREVQCDGAVLVTTPQAVSIEDV 162 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~---~~~l~~~~~~~ad~viiv~~~~~~~~~~~ 162 (192)
|. + ...+.+++.+. + ..+|++||+...++-+.. ..-+... .---+|+|++....+....
T Consensus 61 -----~~--~-----~~~~~i~~~~~--~-~~~d~~vIEG~gGl~dg~~~s~adla~~---l~~PviLVv~~~~g~~s~a 122 (433)
T PRK13896 61 -----PW--L-----SGEDGMRRNYY--R-GEGDICVVEGVMGLYDGDVSSTAMVAEA---LDLPVVLVVDAKAGMESVA 122 (433)
T ss_pred -----hh--h-----CCHHHHHHHHH--h-hcCCEEEEECCCccccCCCCCHHHHHHH---HCCCEEEEEcCcccHHHHH
Confidence 00 0 01133444433 2 459999999987764432 1111111 1224778888877754444
Q ss_pred --HHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 163 --RKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 163 --~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
...+..+.. .++++.|+|+|++..
T Consensus 123 a~l~g~~~~~~~~~~~~~i~GvIlN~~~~ 151 (433)
T PRK13896 123 ATALGFRAYADRIGRDIDVAGVIAQRAHG 151 (433)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEEECCCc
Confidence 444333333 479999999999863
No 116
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.64 E-value=4.1e-07 Score=74.22 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=80.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHH-hCC-CeEEEEeeCCCCCCCCcccCCCCCCccccCCCCccccc-CCCCceEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLK-DKG-FKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYT-DASQTLAV 81 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g-~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 81 (192)
..++++|+ |-.|+||||++..||..+. ++| ++|.+|++|.++.+. ++.+.. ....++.+
T Consensus 255 ~g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA-----------------~EQLr~~AeilGVpv 316 (484)
T PRK06995 255 RGGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGG-----------------HEQLRIYGKILGVPV 316 (484)
T ss_pred CCcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhH-----------------HHHHHHHHHHhCCCe
Confidence 35688888 5567999999999999886 466 599999999865321 111100 00111111
Q ss_pred EeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHhhhh-cCCeEEEecCCCccc
Q psy9977 82 MSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECLREV-QCDGAVLVTTPQAVS 158 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~~~~-~ad~viiv~~~~~~~ 158 (192)
.. ... ..+ +...+..+ .++|+++||+++...... ...+..+... .....++|++.. ..
T Consensus 317 ~~----~~~-----------~~D-l~~aL~~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt-~~ 377 (484)
T PRK06995 317 HA----VKD-----------AAD-LRLALSEL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT-SH 377 (484)
T ss_pred ec----cCC-----------chh-HHHHHHhc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC-Cc
Confidence 00 000 011 11122333 478999999987543321 1122222110 022356666553 34
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
...+.+.++.++..+ +.|+|+||.|-..
T Consensus 378 ~~~l~~i~~~f~~~~--~~g~IlTKlDet~ 405 (484)
T PRK06995 378 GDTLNEVVQAYRGPG--LAGCILTKLDEAA 405 (484)
T ss_pred HHHHHHHHHHhccCC--CCEEEEeCCCCcc
Confidence 456666666666654 4689999998643
No 117
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.57 E-value=1.2e-06 Score=69.54 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=81.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
+.|.+.++.+|+||||++..|.++|.++|++|--+-.-|.. .... +..... -....|||..-
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY------IDP~---~H~~at------G~~srNLD~~m--- 62 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY------IDPG---YHTAAT------GRPSRNLDSWM--- 62 (451)
T ss_pred CceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc------cCch---hhhHhh------CCccCCCchhh---
Confidence 35788999999999999999999999999988333221110 0000 000000 00122222210
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCC--------hhHHHHHHHhhhhcCCeEEEecCCCccc
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTS--------DEHITVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~--------~~~~~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
...+.+++++..-. ++.|+.||..-=++- ....+-++.+. --=||+|++....+
T Consensus 63 --------------m~~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l---~~PVvLVid~~~~s 124 (451)
T COG1797 63 --------------MGEEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLL---GAPVVLVVDASGLS 124 (451)
T ss_pred --------------cCHHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHh---CCCEEEEEeCcchh
Confidence 12356777777666 788998876542221 12223344431 22367777777665
Q ss_pred HHHHHHHHHHhH--hcCCceeeEEeccCcc
Q psy9977 159 IEDVRKEITFCK--KTNIKILGLIENMSGY 186 (192)
Q Consensus 159 ~~~~~~~~~~l~--~~~~~~~g~v~N~~~~ 186 (192)
...+ .++..++ +..+++.|||+||+.-
T Consensus 125 ~S~A-Aiv~G~~~fdp~v~iaGVIlNrVgs 153 (451)
T COG1797 125 RSVA-AIVKGFKHFDPDVNIAGVILNRVGS 153 (451)
T ss_pred HHHH-HHHHHHHhcCCCCceEEEEEecCCC
Confidence 4433 3444444 3467889999999864
No 118
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=98.48 E-value=8.1e-07 Score=65.83 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=34.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|++|.|++. .|+||||++..|+..|.++|++|.++.-+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 578899977 59999999999999999999999999753
No 119
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.48 E-value=7.4e-08 Score=67.06 Aligned_cols=51 Identities=31% Similarity=0.367 Sum_probs=39.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN 58 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~ 58 (192)
.+|+++ |..|+||||+|..|...|.+.|.+|.++|.|.-+..+..-++...
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~ 53 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSK 53 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSH
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCH
Confidence 455555 888999999999999999999999999999988777665554443
No 120
>KOG0635|consensus
Probab=98.44 E-value=7.1e-07 Score=61.02 Aligned_cols=111 Identities=22% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccc-cCCCCceEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVY-TDASQTLAV 81 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 81 (192)
+++.-+|.++ +-+|+||||+|.+|.++|-++|+-+..+|.|.-+.++..-+|.......+......+.. .....++-+
T Consensus 28 ~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~ic 106 (207)
T KOG0635|consen 28 KQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVIC 106 (207)
T ss_pred cCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceee
Confidence 3455567776 77889999999999999999999999999999989998888877665444333333221 112345555
Q ss_pred EeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCC
Q psy9977 82 MSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPP 127 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~ 127 (192)
+..-..+.. .+...-++++.. ..|=-|++|+|-
T Consensus 107 iaSlISPYR----------~dRdacRel~~~---~~FiEvfmdvpl 139 (207)
T KOG0635|consen 107 IASLISPYR----------KDRDACRELLPE---GDFIEVFMDVPL 139 (207)
T ss_pred eehhcCchh----------ccHHHHHHhccC---CCeEEEEecCcH
Confidence 543322221 233445555432 445458888883
No 121
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.40 E-value=6e-07 Score=72.39 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=99.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC------ccccCCCC------ccccc-
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD------VHQCPEGW------VPVYT- 73 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~------~~~~~~~~------~~~~~- 73 (192)
+.|++.++.+.+|||++++.|++.++++|++| .-+-.|.-++..+.-.+... ++....+. .+++.
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V--~PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLK 79 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILARRGYRV--APFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLK 79 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHhcCCcc--CCCchhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEe
Confidence 46899999999999999999999999999999 45555555555554443332 11111122 12221
Q ss_pred -CCCCceEEEeeccccccCCccccc--CCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-----HHHHHHhhhhcC
Q psy9977 74 -DASQTLAVMSIGFLLKNRDDAIIW--RGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-----ITVMECLREVQC 145 (192)
Q Consensus 74 -~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-----~~~l~~~~~~~a 145 (192)
....+..++-.+...........+ ....-...+.+.+..+. +.||+|++...+...... ...+.. ...+
T Consensus 80 P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~--a~~~ 156 (486)
T COG1492 80 PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGV--AEIA 156 (486)
T ss_pred ecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceee--ehhc
Confidence 123356666655544432221101 11223345666667676 899999999987654322 111111 1124
Q ss_pred Ce-EEEecCCCc-ccHHHHHHHHHHhH-hcCCceeeEEeccCc
Q psy9977 146 DG-AVLVTTPQA-VSIEDVRKEITFCK-KTNIKILGLIENMSG 185 (192)
Q Consensus 146 d~-viiv~~~~~-~~~~~~~~~~~~l~-~~~~~~~g~v~N~~~ 185 (192)
|. +|+|.+=+. ....++--++..|. .....+.|+|+||++
T Consensus 157 dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFR 199 (486)
T COG1492 157 DAPVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFR 199 (486)
T ss_pred CCCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeC
Confidence 43 556665554 33333444555544 233457899999876
No 122
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.36 E-value=1.9e-06 Score=74.78 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=51.1
Q ss_pred CCcEEEEeCCCCCChhH------HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 117 DVDYLIIDTPPGTSDEH------ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~------~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
.+|++||++.+++-.+. ...+..+ ---+|+|+.....+++.+.-.++.++..|+++.|+|+|..+
T Consensus 184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l----~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~ 254 (817)
T PLN02974 184 GRVLALVETAGGVASPGPSGTLQCDLYRPL----RLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG 254 (817)
T ss_pred cCCeEEEECCCcccccCCCCCCHHHHHHHh----CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc
Confidence 58999999998764321 1222222 22489999999999999999999999999999999999644
No 123
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.33 E-value=1.2e-06 Score=71.62 Aligned_cols=52 Identities=35% Similarity=0.371 Sum_probs=47.1
Q ss_pred CcEEEEEEeCCC---CccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC
Q psy9977 5 VKHVILVLSGKG---GVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS 59 (192)
Q Consensus 5 ~~~~i~~~s~~g---g~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~ 59 (192)
..|+|.|+|... |.||||++.+||..|++.|+||+++ .+.|++...|+....
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli---LR~Psl~~~fg~kgg 108 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA---LREPSLGPVFGIKGG 108 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE---EecCCcccccCCCCC
Confidence 478999999999 9999999999999999999999999 888999888865543
No 124
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.32 E-value=1.6e-05 Score=55.65 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=35.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++++++|++.| ++||||+...+...|.++|++|.+|--...
T Consensus 1 m~~Il~ivG~k-~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYK-NSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecC-CCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 57899999555 599999999999999999999999976644
No 125
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.30 E-value=9.6e-06 Score=56.78 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=31.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|+|+ +..|+||||++..|+..|.++|++|.+|..+..
T Consensus 2 i~i~-G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 2 LQIV-GPKNSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 5666 445999999999999999999999999997743
No 126
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=98.28 E-value=2.2e-06 Score=69.45 Aligned_cols=52 Identities=31% Similarity=0.317 Sum_probs=47.1
Q ss_pred CcEEEEEEeCCC---CccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC
Q psy9977 5 VKHVILVLSGKG---GVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS 59 (192)
Q Consensus 5 ~~~~i~~~s~~g---g~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~ 59 (192)
..|+|.|+|... |.||||++++||..|++.|+||+++ .++|++...||....
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kgg 91 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKGG 91 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCCC
Confidence 578999999999 9999999999999999999999988 888999988876654
No 127
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.27 E-value=1.4e-05 Score=56.82 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=37.1
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|...++++++|+ +..|+||||+...+...|..+|++|..|--+..
T Consensus 1 ~~~~~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 1 MNKTMIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CCCCCceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 455666777777 668899999999999999999999999976543
No 128
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.24 E-value=5.2e-05 Score=53.29 Aligned_cols=144 Identities=13% Similarity=0.210 Sum_probs=75.2
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccccc
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLK 89 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (192)
.++.|--|+||||+...+.... .|+++.++-.+.....+.. ..+ ......+.-+..|-...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~------~~~-----------~~~~~~v~~l~~GCiCC 63 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDN------QLV-----------VDTDEEIIEMNNGCICC 63 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhH------HHH-----------hCCCceEEEeCCCEeEe
Confidence 4455777899999999887653 5888888777653322210 000 00111112121111111
Q ss_pred cCCcccccCCchhHHHHHHHHHhh--cCCCCcEEEEeCCCCCChhHHHHHHHh-------hhhcCCeEEEecCCCccc--
Q psy9977 90 NRDDAIIWRGPKKTAMIRQIINDV--CWKDVDYLIIDTPPGTSDEHITVMECL-------REVQCDGAVLVTTPQAVS-- 158 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~l--~~~~~D~IiiD~~~~~~~~~~~~l~~~-------~~~~ad~viiv~~~~~~~-- 158 (192)
.. .....+.+.++++.+ +...+|+|++|+|+....... +..+ ...+.|.++.++++....
T Consensus 64 ~~-------~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~--~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~ 134 (158)
T cd03112 64 TV-------RGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPV--AQTFFMDEELAERYLLDGVITLVDAKHANQH 134 (158)
T ss_pred eC-------chhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHHH--HHHHhhchhhhcceeeccEEEEEEhhHhHHH
Confidence 10 112334454444432 125799999999988754332 2111 012477788888875322
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
+.....+.++++.... +|+||.|
T Consensus 135 ~~~~~~~~~Qi~~ad~----ivlnk~d 157 (158)
T cd03112 135 LDQQTEAQSQIAFADR----ILLNKTD 157 (158)
T ss_pred hhccHHHHHHHHHCCE----EEEeccc
Confidence 2222334455555433 8999986
No 129
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=3.5e-05 Score=62.13 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=82.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHh-C-CCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCccc-ccCCCCceEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKD-K-GFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPV-YTDASQTLAV 81 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~-g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ 81 (192)
...+++++ |..|+||||+...||..+.. . +.++.++-.|..+.+.. ... .....-++.+
T Consensus 190 ~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigal-----------------EQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGH-----------------EQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHH-----------------HHHHHHHHHcCCce
Confidence 45788888 67789999999999986653 3 47888888887653211 000 0000011111
Q ss_pred EeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHhhh-hcCCeEEEecCCCccc
Q psy9977 82 MSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECLRE-VQCDGAVLVTTPQAVS 158 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~~~-~~ad~viiv~~~~~~~ 158 (192)
... .....+...+..+ .++|+|+||+++-..... ...+..+.. ......++|+++. ..
T Consensus 252 ~~v----------------~~~~dl~~al~~l--~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~ 312 (420)
T PRK14721 252 RSI----------------KDIADLQLMLHEL--RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SS 312 (420)
T ss_pred ecC----------------CCHHHHHHHHHHh--cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CC
Confidence 100 1112233444444 589999999975444211 122222211 1234667777664 44
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
.+.+..++..++.. ++.|+|+.|.|-.+
T Consensus 313 ~~~~~~~~~~f~~~--~~~~~I~TKlDEt~ 340 (420)
T PRK14721 313 GDTLDEVISAYQGH--GIHGCIITKVDEAA 340 (420)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeeeCCC
Confidence 55666677777654 45699999998643
No 130
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=98.22 E-value=3.3e-06 Score=69.06 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=47.3
Q ss_pred CcEEEEEEeCCC---CccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC
Q psy9977 5 VKHVILVLSGKG---GVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS 59 (192)
Q Consensus 5 ~~~~i~~~s~~g---g~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~ 59 (192)
..|+|.|+|... |.||||++.+||..|++.|++| +|+ .++|++...||....
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~kgg 107 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVKGG 107 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCCCC
Confidence 579999999888 9999999999999999999999 888 999999988876544
No 131
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.19 E-value=2.4e-05 Score=59.79 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=50.2
Q ss_pred CCCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+++.++|+|+..+.. ....+. .+|.+++|+++.......+..+++.+...+.+.+ +++||.|..
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~-----~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~ 129 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALR-----AADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRE 129 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHH-----HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccC
Confidence 57899999999865421 222333 3999999999987777777788888888888766 899999863
No 132
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.15 E-value=5.2e-05 Score=55.15 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=48.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.++++|+|+.... .......+ ..+|.+++|+++...-.....+.+..+...+.+.+-+++||.|..
T Consensus 63 ~~~~i~~iDtPG~~~~-~~~~~~~~--~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 63 ANRHYAHVDCPGHADY-IKNMITGA--AQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCeEEEEEECcCHHHH-HHHHHHHh--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 4567899999975322 11222222 149999999998776566777888888888887555889999863
No 133
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=98.13 E-value=4.4e-05 Score=61.40 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=33.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|++|.|++.| |+||||+...|...|.++|+||.+|--+
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 5789999765 9999999999999999999999998653
No 134
>KOG1533|consensus
Probab=98.12 E-value=3.2e-06 Score=62.01 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccccccCCc
Q psy9977 14 GKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLKNRDD 93 (192)
Q Consensus 14 ~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 93 (192)
|-.|+||||-...+.+.|...|++|.+|++||....+++-...+-..+... .+... . ....|..
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~----edvm~----~--------~~LGPNg 72 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITV----EDVME----E--------LGLGPNG 72 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccH----HHHHH----H--------hCCCCch
Confidence 567899999999999999999999999999999876654333222211110 01110 0 0112223
Q ss_pred ccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCC
Q psy9977 94 AIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGT 129 (192)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~ 129 (192)
++..-.+...+.+++++..++..+..|++||+|+-.
T Consensus 73 ~l~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQV 108 (290)
T KOG1533|consen 73 ALKYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQV 108 (290)
T ss_pred hHHHHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcE
Confidence 332223344456677777777558889999999854
No 135
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=98.10 E-value=3.6e-05 Score=54.05 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=35.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|++|.|++. .|+||||++..|...|...|++|.+|..+..
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 578888866 5999999999999999999999999988755
No 136
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.10 E-value=5.3e-05 Score=55.81 Aligned_cols=66 Identities=23% Similarity=0.223 Sum_probs=44.4
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.++|+|+...... ...+. .+|.+++|++..........+.++.+...+.+.+ +++||.|..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~-----~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALR-----LSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIV-LVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHH-----hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 467899999998654322 22233 4999999998865443444555566655666655 999999964
No 137
>PRK04296 thymidine kinase; Provisional
Probab=98.09 E-value=0.00027 Score=51.23 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=30.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
.|.++.+.-|+||||.+..++..+...|++|+++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35555677789999999999999999999999993
No 138
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.09 E-value=6.6e-05 Score=53.70 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=44.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++++++|+|+....... ....+ ..+|.+++|++..........+.+..+...+.+++ +++||.|..
T Consensus 61 ~~~~~liDtpG~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~-iv~nK~D~~ 127 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSE-VIRGL--SVSDGAILVVDANEGVQPQTREHLRIAREGGLPII-VAINKIDRV 127 (189)
T ss_pred CEEEEEEeCCCcHHHHHH-HHHHH--HhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeE-EEEECCCCc
Confidence 578999999975432221 11111 14999999999876555555566666666677655 999998853
No 139
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.08 E-value=5.6e-05 Score=52.92 Aligned_cols=35 Identities=37% Similarity=0.687 Sum_probs=29.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
.|-++.+. |.||||+|..+|...+.+|++|+++=+
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45666555 899999999999999999999999644
No 140
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.07 E-value=7.5e-05 Score=58.38 Aligned_cols=41 Identities=37% Similarity=0.492 Sum_probs=37.9
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
.-..++|++++..-|+|||+++..+|+.|.++|+||++|-.
T Consensus 123 ~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 123 KLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred hhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 34568999999999999999999999999999999999977
No 141
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.03 E-value=7.4e-05 Score=53.92 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=51.1
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+... ........+ ..+|.+++|+++...-.....+.+..+...++|.+ +++||.|.
T Consensus 68 ~~~~i~~iDtPG~~~-f~~~~~~~~--~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~i-vvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHED-FIKEMIRGL--RQADIAILVVDANDGIQPQTEEHLKILRELGIPII-VVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHH-HHHHHHHHH--TTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEE-EEEETCTS
T ss_pred cccceeecccccccc-eeeccccee--cccccceeeeecccccccccccccccccccccceE-Eeeeeccc
Confidence 688999999997543 222233322 25999999999988777888999999999999955 99999985
No 142
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.02 E-value=0.00028 Score=52.92 Aligned_cols=68 Identities=25% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.+.++|+|+...... .....+ ..+|.+++|++....-......+++.+++.+.+.+ +++||.|..
T Consensus 62 ~~~~i~liDTPG~~~f~~-~~~~~l--~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~ 129 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIA-EVERSL--SVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRA 129 (237)
T ss_pred CCEEEEEEeCCCccchHH-HHHHHH--HHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccc
Confidence 577899999997654322 122222 14899999998876655667778888888888876 899999863
No 143
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.01 E-value=6.6e-05 Score=57.32 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=46.5
Q ss_pred CCCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+..... ....+. .+|.+++|+++...-.....++++..+..+.+++ +++||.|.
T Consensus 69 ~~~~i~liDTPG~~df~~~~~~~l~-----~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~ 135 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTYRTLT-----AVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDR 135 (267)
T ss_pred CCEEEEEEECCCchHHHHHHHHHHH-----HCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCcc
Confidence 57889999999754321 222333 3999999998865444556677777777788865 89999985
No 144
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.01 E-value=2.3e-05 Score=53.91 Aligned_cols=41 Identities=32% Similarity=0.412 Sum_probs=32.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEE-EEeeCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVG-ILDIDLCGP 48 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vl-liD~d~~~~ 48 (192)
++|.|++.+ ++||||++..|...|.++|++|. +.+.+..++
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~ 42 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQF 42 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTST
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCCc
Confidence 578888775 89999999999999999999999 888887444
No 145
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.01 E-value=1.5e-05 Score=57.32 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=34.5
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
.++.+..|+|||+++..++...++.|.+|+++.++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~ 40 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPE 40 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHH
Confidence 456799999999999999999999999999999986543
No 146
>PRK00089 era GTPase Era; Reviewed
Probab=98.00 E-value=0.00031 Score=54.28 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=42.9
Q ss_pred CCCcEEEEeCCCCCChhHH-------HHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHI-------TVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~-------~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+++.++++|+|+....... ..... ...+|.++++++....--.....+++.+...+.+++ +|+|+.|..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~--~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS--LKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHH--HhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCC
Confidence 3567899999876543210 11111 125898888888876333444556666666666666 889998864
No 147
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.99 E-value=0.00024 Score=54.38 Aligned_cols=68 Identities=29% Similarity=0.213 Sum_probs=49.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+++.+.++|+|+..... ......+. .+|.+++|+++...-.....++++.++..+.+.+ +++||.|..
T Consensus 62 ~~~~i~liDTPG~~df~-~~~~~~l~--~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 129 (270)
T cd01886 62 KDHRINIIDTPGHVDFT-IEVERSLR--VLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT 129 (270)
T ss_pred CCEEEEEEECCCcHHHH-HHHHHHHH--HcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 57789999999754322 12222221 4999999999877666677788888888888887 899999963
No 148
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.97 E-value=0.00039 Score=48.28 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=17.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
..+|+++ |..|+||||+.-.+.
T Consensus 3 ~~~i~~~-G~~g~GKttl~~~l~ 24 (168)
T cd04163 3 SGFVAIV-GRPNVGKSTLLNALV 24 (168)
T ss_pred eeEEEEE-CCCCCCHHHHHHHHh
Confidence 4567777 777899999998875
No 149
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=97.97 E-value=0.00027 Score=52.53 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=94.2
Q ss_pred EEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-C---------ccccCCCCcccccCCCC
Q psy9977 9 ILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-D---------VHQCPEGWVPVYTDASQ 77 (192)
Q Consensus 9 i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~ 77 (192)
|.++++ -+|.||-..|+.++..|..+|++|..+-+||.-.--+--+..-.. + ........+-.......
T Consensus 3 i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~ 82 (255)
T cd03113 3 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLS 82 (255)
T ss_pred EEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCc
Confidence 444443 578999999999999999999999999998653211111111111 0 00000001111111111
Q ss_pred ceEEEeecccccc----CCccccc-----CCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhH----HHHHHHhhh-
Q psy9977 78 TLAVMSIGFLLKN----RDDAIIW-----RGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEH----ITVMECLRE- 142 (192)
Q Consensus 78 ~l~~~~~~~~~~~----~~~~~~~-----~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~----~~~l~~~~~- 142 (192)
.-..++.|..+.. .+....+ --|+....+++.+..+. ...+|++|++.++..++-. ..++..+..
T Consensus 83 ~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~ 162 (255)
T cd03113 83 RDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLE 162 (255)
T ss_pred CccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHH
Confidence 1112222221111 0000000 01344556666666554 3699999999999876633 333333321
Q ss_pred -hcCCe-----EEEe--cCCCcccHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 143 -VQCDG-----AVLV--TTPQAVSIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 143 -~~ad~-----viiv--~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
..-+. .++| -..+...-.-++..++.|+..|+.+.++|+|.-+
T Consensus 163 ~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~ 213 (255)
T cd03113 163 LGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEK 213 (255)
T ss_pred hCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCC
Confidence 11122 2233 2234555667788999999999999999999733
No 150
>PHA02542 41 41 helicase; Provisional
Probab=97.96 E-value=3e-06 Score=69.46 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~ 51 (192)
.-+.++++..|+||||++.++|...++.|++|++++++.....+.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIA 234 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 357788899999999999999999999999999999998765443
No 151
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.94 E-value=0.00013 Score=51.76 Aligned_cols=36 Identities=36% Similarity=0.581 Sum_probs=30.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.|-++.+ .|.||||.|..+|...+.+|++|+++=+-
T Consensus 7 li~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFl 42 (173)
T TIGR00708 7 IIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFI 42 (173)
T ss_pred EEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 4555544 78999999999999999999999988554
No 152
>PRK08233 hypothetical protein; Provisional
Probab=97.92 E-value=0.00012 Score=52.32 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=28.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..+|+|.|+. |+||||+|..|+..|. +..++..|.+..
T Consensus 3 ~~iI~I~G~~-GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAAVS-GGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 4567777555 9999999999998875 347777777643
No 153
>COG1159 Era GTPase [General function prediction only]
Probab=97.90 E-value=0.00016 Score=55.01 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=74.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
-.++++ |+.++||||+.=+|- |.++.++.--++..-. ...++..
T Consensus 7 GfVaIi-GrPNvGKSTLlN~l~------G~KisIvS~k~QTTR~------------------------~I~GI~t----- 50 (298)
T COG1159 7 GFVAII-GRPNVGKSTLLNALV------GQKISIVSPKPQTTRN------------------------RIRGIVT----- 50 (298)
T ss_pred EEEEEE-cCCCCcHHHHHHHHh------cCceEeecCCcchhhh------------------------heeEEEE-----
Confidence 356666 899999999987764 8899888776664210 0111111
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH-------HHHHHhhhhcCCeEEEecCCCcccH
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI-------TVMECLREVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~-------~~l~~~~~~~ad~viiv~~~~~~~~ 159 (192)
.+++-.|++|||+....... .+... -.++|.++++++.+..--
T Consensus 51 ----------------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s--l~dvDlilfvvd~~~~~~ 100 (298)
T COG1159 51 ----------------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSA--LKDVDLILFVVDADEGWG 100 (298)
T ss_pred ----------------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHH--hccCcEEEEEEeccccCC
Confidence 14677888898876543211 01111 235899999998887655
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..-..+++.+++...+++ +++|++|..
T Consensus 101 ~~d~~il~~lk~~~~pvi-l~iNKID~~ 127 (298)
T COG1159 101 PGDEFILEQLKKTKTPVI-LVVNKIDKV 127 (298)
T ss_pred ccHHHHHHHHhhcCCCeE-EEEEccccC
Confidence 577778888888666766 889998853
No 154
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.89 E-value=3.4e-05 Score=55.05 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=36.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
..+.+|+++ |-.|+||||++..|+..+...|.++.++|.|....
T Consensus 2 ~~g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 2 QRGVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 345666666 78889999999999999999999999999996543
No 155
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.89 E-value=0.00027 Score=52.56 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=50.1
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+-+.++|+|+... .....+..+....+|.+++|++++..-.....+.+..+...+.+++ +++||.|.
T Consensus 82 ~~~~i~liDtpG~~~-~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~i-vvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHER-YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVF-VVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHH-HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 577899999997532 2222333321124899999999877667778888888888899865 99999985
No 156
>KOG2749|consensus
Probab=97.87 E-value=0.00013 Score=56.77 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=40.0
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~ 51 (192)
...+++.++++. .+||||++.-|..+..+.|++.+++|+|+.++++.
T Consensus 101 ~~GPrv~vVGp~-d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749|consen 101 SYGPRVMVVGPT-DVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSIT 147 (415)
T ss_pred ccCCEEEEECCC-ccchHHHHHHHHHHHHHcCCcceEEEcCCCCCcee
Confidence 346778888554 59999999999999999999999999999988653
No 157
>PLN03127 Elongation factor Tu; Provisional
Probab=97.83 E-value=0.00057 Score=55.99 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=49.4
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+++-++++|+|+..... ......+ ..+|.+++|+++...-.....+.+..+...+.+.+-+++||.|..
T Consensus 122 ~~~~i~~iDtPGh~~f~-~~~~~g~--~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 122 AKRHYAHVDCPGHADYV-KNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred CCeEEEEEECCCccchH-HHHHHHH--hhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 45678999999764322 2222222 259999999998766566778888888888988655789999863
No 158
>PRK07667 uridine kinase; Provisional
Probab=97.82 E-value=5e-05 Score=55.16 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=34.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.|.-++|-.|+||||+|..|+..|.+.|.+|.+++.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 444455888999999999999999999999999999954
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.82 E-value=0.0002 Score=49.50 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=42.4
Q ss_pred CCCcEEEEeCCCCCChhH------H-HHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH------I-TVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~------~-~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... . ..... ...+|.+++|.++..........+.+.+++.+.+++ +|+||.|.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELA--IEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVI-LVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHH--HHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEE-EEEECccc
Confidence 357889999998655322 0 00111 124899999988764332333455666666677665 99999885
No 160
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.82 E-value=0.00041 Score=57.89 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=47.6
Q ss_pred CCCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+.... .....+. .+|.+++|+++...-...+..+++.++..+.+++ +++||.|.
T Consensus 78 ~~~~inliDTPG~~df~~~~~~~l~-----~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pii-vviNKiD~ 144 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDTYRTLT-----AVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIF-TFMNKLDR 144 (527)
T ss_pred CCeEEEEEECCChhhHHHHHHHHHH-----hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 5788999999976322 1223343 3999999999876555566777777777788765 89999986
No 161
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.79 E-value=0.00041 Score=50.93 Aligned_cols=41 Identities=24% Similarity=0.326 Sum_probs=32.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+..++|+|+ |--|+||||+...+++.+. .+++|.++..|+.
T Consensus 20 ~~~~~i~~~-G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 20 HGLVVLNFM-SSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred cCcEEEEEE-CCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 345677777 5667999999999998875 4679999998764
No 162
>CHL00071 tufA elongation factor Tu
Probab=97.79 E-value=0.00082 Score=54.53 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=48.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+-++++|+|+. .......+..+ ..+|.+++|+++...-.....+.+..+...+.+.+-+++||.|.
T Consensus 73 ~~~~~~~iDtPGh-~~~~~~~~~~~--~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGH-ADYVKNMITGA--AQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCCh-HHHHHHHHHHH--HhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 4567899999973 23222233332 25999999999887666777788888888888855588999986
No 163
>PRK00049 elongation factor Tu; Reviewed
Probab=97.78 E-value=0.0005 Score=55.49 Aligned_cols=68 Identities=19% Similarity=0.312 Sum_probs=47.9
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+.++++|+|+.. .........+ ..+|.+++|+++...-.....+.+..+...+.+.+-+++||.|.
T Consensus 73 ~~~~i~~iDtPG~~-~f~~~~~~~~--~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHH-HHHHHHHhhh--ccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 35578999999753 2222222222 35999999999877666677778888888888866568999986
No 164
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=0.00039 Score=55.91 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=46.6
Q ss_pred CCCcEEEEeCCCCCChh---HHH-----HHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDE---HIT-----VMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~---~~~-----~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.+|||++..... ... ...+ ..+||.+++|++....-...=..+.+.|++.+.|++ +|+||++-
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A--i~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~ 124 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIA--IEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDN 124 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHH--HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccC
Confidence 46678999998765322 111 1111 236999999999987655666677777886667766 99999885
No 165
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.77 E-value=0.00024 Score=57.98 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCCCChhH-----H--HHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH-----I--TVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~-----~--~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... . ..... ..++|.+++|+++...-...-..+.+.+++.+.+++ +++||.|.
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~--~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~ 121 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELA--IEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDG 121 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHH--HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 46789999987654111 0 01111 125999999998875433333456667777788766 99999984
No 166
>PRK15453 phosphoribulokinase; Provisional
Probab=97.77 E-value=6.1e-05 Score=57.37 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=38.3
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+++..+|+|+ |.+|+||||++..++..|...+.++.+++.|...
T Consensus 2 s~k~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 2 SAKHPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 5666788887 7778999999999999998888899999999764
No 167
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.76 E-value=0.00051 Score=57.37 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=48.9
Q ss_pred CCCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.++|+|+..+.. ....+.. +|.+++|+++...-...+.++++..+..++|++ +++||.|..
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~-----aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D~~ 144 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTA-----VDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLDRD 144 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHH-----CCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCccc
Confidence 56789999999764322 2233443 999999999876555567778888888899876 999999863
No 168
>KOG0744|consensus
Probab=97.76 E-value=0.00014 Score=56.20 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=98.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh----CCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD----KGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~----~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
|.|.+. |-.|+|||+++-+||++|+- +.++..+|+.+.. .-++.+|+...+.+......+.++.... .++-+.
T Consensus 178 RliLlh-GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh-sLFSKWFsESgKlV~kmF~kI~ELv~d~-~~lVfv 254 (423)
T KOG0744|consen 178 RLILLH-GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH-SLFSKWFSESGKLVAKMFQKIQELVEDR-GNLVFV 254 (423)
T ss_pred eEEEEe-CCCCCChhHHHHHHHHhheeeecCccccceEEEEehh-HHHHHHHhhhhhHHHHHHHHHHHHHhCC-CcEEEE
Confidence 455555 66789999999999999983 4467889999866 4567777777665555444444444432 222222
Q ss_pred eec-cc-cccCC-cccccCC-chhHHHHHHHH---HhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC
Q psy9977 83 SIG-FL-LKNRD-DAIIWRG-PKKTAMIRQII---NDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ 155 (192)
Q Consensus 83 ~~~-~~-~~~~~-~~~~~~~-~~~~~~l~~~l---~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~ 155 (192)
-.. .. ....+ ....... .+....++.++ +.++ ....++|+-++...+..+.+.++. ||.+..|..|+
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-~~~NvliL~TSNl~~siD~AfVDR-----ADi~~yVG~Pt 328 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-RYPNVLILATSNLTDSIDVAFVDR-----ADIVFYVGPPT 328 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEeccchHHHHHHHhhhH-----hhheeecCCcc
Confidence 111 00 00000 0000011 12223344444 4455 566788888888888877788888 99999999998
Q ss_pred cccHHHHHH-HHHHhHhcCC
Q psy9977 156 AVSIEDVRK-EITFCKKTNI 174 (192)
Q Consensus 156 ~~~~~~~~~-~~~~l~~~~~ 174 (192)
...+.++.+ -++.|...|+
T Consensus 329 ~~ai~~IlkscieEL~~~gI 348 (423)
T KOG0744|consen 329 AEAIYEILKSCIEELISSGI 348 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCe
Confidence 887776654 5666666544
No 169
>KOG1534|consensus
Probab=97.75 E-value=6e-05 Score=54.62 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
+.-.++-|-.|+||||-..++-.+.-..|+++-+|++||......+-...+-..+.......++ +++
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEd--------l~~----- 69 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMED--------LDL----- 69 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHH--------hcc-----
Confidence 4334455677899999999999999999999999999988765543332222222222111111 111
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCC
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTS 130 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~ 130 (192)
.|...+.+-.+...+.+.++-+..-.-+=||+|+|+|+-++
T Consensus 70 ---GPNGgLv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQIE 110 (273)
T KOG1534|consen 70 ---GPNGGLVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQIE 110 (273)
T ss_pred ---CCCccchhHHHHHHHHHHHHHhhccCccCCEEEEeCCCeeE
Confidence 12222222222233445555443322355899999998654
No 170
>PRK12740 elongation factor G; Reviewed
Probab=97.73 E-value=0.00021 Score=61.51 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=49.5
Q ss_pred CCCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++++.++|+|+.... .....+. .+|.+++|+++...........+..+...+.+.+ +++||.|..
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~-----~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~ 125 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALR-----VLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRA 125 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHH-----HhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 5789999999987542 2222333 4999999999987666667777777877888876 899999863
No 171
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.73 E-value=9.8e-05 Score=54.22 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=34.9
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|+.+.+.+|++. |.+|+||||++..|+..+ .+.++.+++.|..
T Consensus 1 ~~~~~~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 1 MMMKKPIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CCCCCCEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 456666677776 788899999999999988 4678899999865
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.72 E-value=0.00021 Score=48.09 Aligned_cols=40 Identities=35% Similarity=0.357 Sum_probs=33.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.+.++ +..|+||||++..+|..+...++.+++++++...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 456666 5588999999999999999887889999888664
No 173
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.72 E-value=0.0014 Score=50.08 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=41.6
Q ss_pred CCcEEEEeCCCCCChhH--HH-----HHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEH--IT-----VMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~-----~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+.++++|+|+...... .. ....+ ..+|.+++|++++...... ..+++.++..+.+.+ +|+||.|..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l--~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~Dl~ 120 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAI--GGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKLDNK 120 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHH--hhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECeeCC
Confidence 45688899987543210 00 11111 2589999998887543333 556666777777765 899998863
No 174
>PRK12736 elongation factor Tu; Reviewed
Probab=97.72 E-value=0.00072 Score=54.58 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=48.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.+.++|+|+. .......+..+ ..+|.+++|++....-.....+.+..+...+.+.+-+++||.|..
T Consensus 73 ~~~~i~~iDtPGh-~~f~~~~~~~~--~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 73 EKRHYAHVDCPGH-ADYVKNMITGA--AQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred CCcEEEEEECCCH-HHHHHHHHHHH--hhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 4567899999973 22222232222 258999999998766566677778888888888655889999863
No 175
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.71 E-value=8.4e-05 Score=54.92 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=34.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+..+.+.+|+||||++.++|..++.+|.+|+++|.+..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 455566899999999999999999999999999998744
No 176
>PRK10218 GTP-binding protein; Provisional
Probab=97.70 E-value=0.0013 Score=55.88 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+++.+.++|+|+...... .....+ ..+|.+++|++............+..+...+++.+ +++||.|..
T Consensus 66 ~~~~inliDTPG~~df~~-~v~~~l--~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~ 133 (607)
T PRK10218 66 NDYRINIVDTPGHADFGG-EVERVM--SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRP 133 (607)
T ss_pred CCEEEEEEECCCcchhHH-HHHHHH--HhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCC
Confidence 578899999997543321 111111 24999999999877666677777777777899876 899999963
No 177
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.70 E-value=0.00062 Score=49.05 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=30.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.|.++ +..|-||||.|..+|...+..|++|+++=+=
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 55566 5567999999999999999999999998664
No 178
>PRK06696 uridine kinase; Validated
Probab=97.68 E-value=0.0001 Score=54.69 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=35.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.+.|..++|.+|+||||+|..|+..|...|.+|+.+-+|-..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 345556668999999999999999999999999998887554
No 179
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.66 E-value=0.0014 Score=48.65 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=48.4
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.++|+|+...... ...+. .+|.+++|++............++.....+.+++ +++||.|..
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~-----~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALR-----LCDGALVVVDAVEGVCVQTETVLRQALKERVKPV-LVINKIDRL 138 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHH-----hcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 477889999997654322 22333 4999999999877666667777777777788765 999999963
No 180
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.66 E-value=0.00012 Score=53.41 Aligned_cols=43 Identities=33% Similarity=0.343 Sum_probs=36.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
++.+|+++ |..|+||||++..|+..|...|..+.++|.|....
T Consensus 23 ~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 23 KGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 44566666 77899999999999999999999999999986543
No 181
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.66 E-value=0.00033 Score=50.15 Aligned_cols=143 Identities=13% Similarity=0.196 Sum_probs=71.0
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccccc
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLK 89 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 89 (192)
.+++|==|+||||+-.++.. ....|.|+.+|-.|...-.... .........+.-+..|-...
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~-----------------~~l~~~~~~v~~l~~gcicc 64 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDA-----------------ELLQEDGVPVVELNNGCICC 64 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHH-----------------HHHHTTT-EEEEECTTTESS
T ss_pred EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccch-----------------hhhcccceEEEEecCCCccc
Confidence 34455567999999999998 6668999999988866422210 00111111122222222111
Q ss_pred cCCcccccCCchhHHHHHHHHHhhcCC--CCcEEEEeCCCCCChhHHH----HHHHhhhhcCCeEEEecCCCcc-cHHHH
Q psy9977 90 NRDDAIIWRGPKKTAMIRQIINDVCWK--DVDYLIIDTPPGTSDEHIT----VMECLREVQCDGAVLVTTPQAV-SIEDV 162 (192)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~l~~~--~~D~IiiD~~~~~~~~~~~----~l~~~~~~~ad~viiv~~~~~~-~~~~~ 162 (192)
.... .....+.++.. .. .+|+|||.+.+........ .+.. .-.-+.++.|+++... .....
T Consensus 65 ~~~~-------~~~~~l~~l~~---~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~--~~~~~~iI~vVDa~~~~~~~~~ 132 (178)
T PF02492_consen 65 TLRD-------DLVEALRRLLR---EYEERPDRIIIETSGLADPAPLILQDPPLKE--DFRLDSIITVVDATNFDELENI 132 (178)
T ss_dssp -TTS--------HHHHHHHHCC---CCHGC-SEEEEEEECSSGGGGHHHHSHHHHH--HESESEEEEEEEGTTHGGHTTH
T ss_pred ccHH-------HHHHHHHHHHH---hcCCCcCEEEECCccccccchhhhccccccc--cccccceeEEeccccccccccc
Confidence 1111 12233333322 23 5799999999855544430 0110 1146778888887442 22222
Q ss_pred H-HHHHHhHhcCCceeeEEeccCcc
Q psy9977 163 R-KEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 163 ~-~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
. .+.++++..+ -+|+||.|.
T Consensus 133 ~~~~~~Qi~~AD----vIvlnK~D~ 153 (178)
T PF02492_consen 133 PELLREQIAFAD----VIVLNKIDL 153 (178)
T ss_dssp CHHHHHHHCT-S----EEEEE-GGG
T ss_pred hhhhhhcchhcC----EEEEecccc
Confidence 2 2334444432 388998875
No 182
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.65 E-value=0.00011 Score=55.09 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=33.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh------------CCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD------------KGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~------------~g~~vlliD~d~~~~ 48 (192)
.++++.+.+|+|||+++..+|.+.+. .+.+|++++++....
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~ 54 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE 54 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH
Confidence 36778899999999999999998773 466899999886543
No 183
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=97.65 E-value=0.0011 Score=51.74 Aligned_cols=43 Identities=37% Similarity=0.492 Sum_probs=37.3
Q ss_pred CcEEEEEEeCC-CCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 5 VKHVILVLSGK-GGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 5 ~~~~i~~~s~~-gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
..++|.|-+.. ||+|||.++..||..|.++|+++.++-=-+.+
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 34688888877 99999999999999999999999999766554
No 184
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.64 E-value=0.00082 Score=53.71 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=35.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++++|.|+ +..|+||||+...|...|.++|++|.+|--|..
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 56788888 567899999999999999999999999987643
No 185
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.63 E-value=0.00018 Score=62.37 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=49.0
Q ss_pred CCCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+|.+.++|+|+.... .....+. .+|.+++|++....-......+++.+.+.+.+.+ +++||.|..
T Consensus 84 ~~~~i~liDTPG~~~f~~~~~~al~-----~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 151 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDVTRAMR-----AVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRL 151 (720)
T ss_pred CceEEEEEeCCCccccHHHHHHHHH-----hcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcc
Confidence 6889999999987542 2223343 3999999998876555566677777777788877 999999974
No 186
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.61 E-value=0.00063 Score=49.27 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=43.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+.+.++|+|+...... ..... ...+|.+++|++............+..+...+.+++ +++||.|.
T Consensus 63 ~~~~~~l~DtpG~~~~~~-~~~~~--~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGG-EVERV--LSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHH-HHHHH--HHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 467789999997543221 11111 125899999988876544555555666666677765 89999986
No 187
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.59 E-value=0.00017 Score=53.61 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=33.6
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+..+++..|+|||+++.++|...++.|.+|+++|++
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4555668999999999999999999999999999999
No 188
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=97.58 E-value=0.0014 Score=51.84 Aligned_cols=38 Identities=32% Similarity=0.587 Sum_probs=35.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
+|+.+.+++...|+|||.++.+|++.|.++|.+|.++-
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEe
Confidence 57899999999999999999999999999999998864
No 189
>PRK05973 replicative DNA helicase; Provisional
Probab=97.58 E-value=0.00017 Score=53.93 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=36.1
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.+.++++..|+|||+++.++|...+++|.+|+++.++...
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~ 104 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE 104 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH
Confidence 4667779999999999999999999999999999999764
No 190
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=97.57 E-value=0.001 Score=52.08 Aligned_cols=42 Identities=36% Similarity=0.486 Sum_probs=35.4
Q ss_pred cEEEEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 6 KHVILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 6 ~~~i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.++|.|-+. .||+|||+++..|+..|.++|++|.++-=.+.+
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 357777544 699999999999999999999999999776653
No 191
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00027 Score=53.87 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=52.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
++-.|--+|+|+-.+..- +.+.. +.++|..|+|+.+.....-+++..+-.-++.|.+.+-+.+||+|.+.
T Consensus 73 ~~rhyahVDcPGHaDYvK-NMItg--AaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 73 ANRHYAHVDCPGHADYVK-NMITG--AAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred CCceEEeccCCChHHHHH-HHhhh--HHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC
Confidence 345667789997665443 22222 11589999999998888888888888888999998889999999764
No 192
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00011 Score=58.45 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=34.1
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+..+++..|.||||+...+|..+|+++ +||||-....
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES 131 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES 131 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC
Confidence 4567789999999999999999999999 9999998855
No 193
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.57 E-value=0.00013 Score=54.80 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=31.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
-.++.|++|+|||+++.++|.++.++|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 45677999999999999999999999999999965
No 194
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.55 E-value=0.0007 Score=57.35 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=49.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.++.+.|+|+|+..+. .......+ ..+|.+++|+++.......+...+..+...+++.+ +++||.|.
T Consensus 62 ~~~kinlIDTPGh~DF-~~ev~~~l--~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~ 128 (594)
T TIGR01394 62 NGTKINIVDTPGHADF-GGEVERVL--GMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDR 128 (594)
T ss_pred CCEEEEEEECCCHHHH-HHHHHHHH--HhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCC
Confidence 5778899999965332 21221111 14999999999987777778888888888899876 99999996
No 195
>PRK15494 era GTPase Era; Provisional
Probab=97.55 E-value=0.0015 Score=51.73 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCChhH-------HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH-------ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~-------~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
++.++++|+|+...... ......+ ..+|.+++|++....--+....+++.++..+.+.+ +|+||.|.
T Consensus 99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l--~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSL--HSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CeEEEEEECCCcCCCcccHHHHHHHHHHHHh--hhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 45678888887532110 0011111 24888888887654222222345666666666665 78899885
No 196
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.55 E-value=0.00036 Score=52.11 Aligned_cols=39 Identities=28% Similarity=0.586 Sum_probs=33.1
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+..+.+..|+||||++.+++..+.++|.++++++.+...
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~ 64 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT 64 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 444448889999999999999999999999999987553
No 197
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.54 E-value=0.00035 Score=52.21 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=33.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++.++ +..|+|||+++.+++...+++|.+|++++++..
T Consensus 26 ~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 26 SLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred cEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 344444 899999999999999998889999999999744
No 198
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.53 E-value=0.00068 Score=52.07 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+...+|.++ +..|+||||+...+...|... +++.+++.|...
T Consensus 102 ~~~~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t 143 (290)
T PRK10463 102 RKQLVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT 143 (290)
T ss_pred cCCeEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence 345667777 668899999999999998764 589999888653
No 199
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.51 E-value=0.001 Score=56.42 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=34.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++++.|++ ..|+||||+...|...|.++|+||.+|.-+
T Consensus 10 ~~vi~ivG-~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 10 IPLLGFCA-YSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred ccEEEEEc-CCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 67888885 588999999999999999999999999875
No 200
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.50 E-value=0.0018 Score=52.29 Aligned_cols=69 Identities=17% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.+.++|+|+... .....+... ..+|.+++|++....-.....+.+..+...+++.+-+++||.|..
T Consensus 73 ~~~~~~liDtpGh~~-f~~~~~~~~--~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 73 ENRHYAHVDCPGHAD-YVKNMITGA--AQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred CCEEEEEEECCchHH-HHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence 355678999996432 222222221 247999999988765556677777778888888665679999853
No 201
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.50 E-value=0.00017 Score=51.76 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=32.7
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.++|..|+||||+|..|+..+...|.++.++..|-..
T Consensus 3 ~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 3 GIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 4558899999999999999999999999999998553
No 202
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.49 E-value=0.00066 Score=50.18 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=25.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++.+.|+ ++.|+||||+|..|+ .++++++.|-.
T Consensus 12 ~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 12 PNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 4455555 999999999988773 47899999965
No 203
>PF13479 AAA_24: AAA domain
Probab=97.48 E-value=0.00087 Score=49.43 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=26.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.-.++++ +..|+||||++..+ -+++++|+|...
T Consensus 3 ~~~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g~ 35 (213)
T PF13479_consen 3 PIKILIY-GPPGSGKTTLAASL--------PKPLFIDTENGS 35 (213)
T ss_pred ceEEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence 3455666 88999999999877 699999999653
No 204
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.48 E-value=0.0012 Score=46.04 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.1
Q ss_pred EEEEEeCCCCccHhHHHHHHH
Q psy9977 8 VILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA 28 (192)
+|+++ |..|+||||+...|.
T Consensus 2 ~i~i~-G~~~~GKssl~~~l~ 21 (164)
T cd04171 2 IIGTA-GHIDHGKTTLIKALT 21 (164)
T ss_pred EEEEE-ecCCCCHHHHHHHHh
Confidence 46666 888899999987774
No 205
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.46 E-value=0.0012 Score=54.18 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccH-------HHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSI-------EDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+.+-+.++|+|+..+.. ......+ +.+|.+++|+++..... ..+.+.+..++..+++.+-+++||.|.
T Consensus 83 ~~~~i~liDtPGh~df~-~~~~~g~--~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFI-KNMITGT--SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCEEEEEEECCCHHHHH-HHHHhhh--hhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 57789999999643322 2222222 25999999999986543 467777777778899876688999984
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.46 E-value=0.0021 Score=47.16 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=43.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
....+.++|+|+.... .......+ ..+|.+++|++..........+....++..+.+.+-+++||.|..
T Consensus 75 ~~~~~~liDTpG~~~~-~~~~~~~~--~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 75 PKRKFIIADTPGHEQY-TRNMVTGA--STADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred CCceEEEEECCcHHHH-HHHHHHhh--hhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 4667889999974321 11222221 258999999988765555555555566666655444689999864
No 207
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.46 E-value=0.0035 Score=49.11 Aligned_cols=148 Identities=14% Similarity=0.239 Sum_probs=75.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
.++..++ |==|+||||+.-.+... ..|+|+.+|-.|...-++...+ + ......+.-+..|
T Consensus 4 ipv~ilt-GFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD~~l------l-----------~~~~~~v~eL~~G 63 (318)
T PRK11537 4 IAVTLLT-GFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQL------I-----------GDRATQIKTLTNG 63 (318)
T ss_pred cCEEEEE-ECCCCCHHHHHHHHHhc--ccCCcccccccCcCCccccHHH------H-----------hCcCceEEEECCC
Confidence 3444444 66679999999988754 4789999998886543321100 0 0001112222211
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcC--CCCcEEEEeCCCCCChhHHHHHHHhh-------hhcCCeEEEecCCCc
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCW--KDVDYLIIDTPPGTSDEHITVMECLR-------EVQCDGAVLVTTPQA 156 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~~D~IiiD~~~~~~~~~~~~l~~~~-------~~~ad~viiv~~~~~ 156 (192)
=...+- .......+.+++...+. ..+|+|||.+.+..+... .+..+. .-.-+.++.|+++..
T Consensus 64 CiCCs~-------~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~--i~~~~~~~~~l~~~~~l~~vvtvvDa~~ 134 (318)
T PRK11537 64 CICCSR-------SNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP--IIQTFFSHEVLCQRYLLDGVIALVDAVH 134 (318)
T ss_pred EEEEcc-------CchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHH--HHHHHhcChhhcccEEeccEEEEEEhhh
Confidence 111111 11234556666654331 259999999987765432 222210 012366788887753
Q ss_pred cc--HHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 157 VS--IEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 157 ~~--~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.. +.......++++... -+|+||.+.
T Consensus 135 ~~~~~~~~~~~~~Qi~~AD----~IvlnK~Dl 162 (318)
T PRK11537 135 ADEQMNQFTIAQSQVGYAD----RILLTKTDV 162 (318)
T ss_pred hhhhccccHHHHHHHHhCC----EEEEecccc
Confidence 21 111112233444432 388898875
No 208
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.46 E-value=0.0018 Score=44.28 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=41.2
Q ss_pred CCcEEEEeCCCCCChhHHHH----HHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITV----MECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~----l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.++++++|+|+......... ...-....+|.+++++++..................+.+.+ +++||.|.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEcccc
Confidence 67889999987543211110 00000124888888888876655444445555566677655 88998875
No 209
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.45 E-value=0.00019 Score=49.84 Aligned_cols=38 Identities=37% Similarity=0.432 Sum_probs=33.2
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.++.+..|+||||++..|+..+.+.|.++.++|.|..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 45568999999999999999999999999999888654
No 210
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.45 E-value=0.0031 Score=43.29 Aligned_cols=68 Identities=25% Similarity=0.155 Sum_probs=44.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhcC---CceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKTN---IKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~g~v~N~~~~~ 187 (192)
..+++.++|+|+...... ..... -.++|.++++.+.. ..+.+.+.+++..+.... .++ -++.||.|..
T Consensus 47 ~~~~~~l~D~~g~~~~~~-~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 118 (159)
T cd00154 47 KTVKLQIWDTAGQERFRS-ITPSY--YRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPI-ILVGNKIDLE 118 (159)
T ss_pred EEEEEEEEecCChHHHHH-HHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEccccc
Confidence 457889999987543221 11111 12589999988886 456777777777776543 554 4999998863
No 211
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.44 E-value=0.0017 Score=53.20 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=49.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccH-------HHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSI-------EDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+.... ....+..+ ..+|.+++|+++..... ..+.+.+..+...|++.+-+++||.|.
T Consensus 83 ~~~~i~lIDtPGh~~f-~~~~~~g~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDF-IKNMITGT--SQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred CCeEEEEEECCChHHH-HHHHHHhh--hhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 5788999999974332 22233222 25999999999876532 577788888888899876699999983
No 212
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.44 E-value=0.00024 Score=53.75 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=34.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
+|+|+ |.+|+||||++..++..|.+.|.++.+++.|....
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 35665 78889999999999999999999999999997654
No 213
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.44 E-value=0.0054 Score=48.05 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred EeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccccccC
Q psy9977 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLKNR 91 (192)
Q Consensus 12 ~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (192)
++|==|+||||+--++..... |+|+.+|--++..=+... .. ........+.-++.|=....-
T Consensus 6 itGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~-----~~-----------~l~~~~e~~~El~nGCICCT~ 67 (323)
T COG0523 6 ITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDG-----GA-----------LLSDTGEEVVELTNGCICCTV 67 (323)
T ss_pred EeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccC-----CC-----------ccccCCccEEEeCCceEEEec
Confidence 334447999999998877766 999999977755433321 01 111111112222222111111
Q ss_pred CcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-HHHHHH---h-hhhcCCeEEEecCCCcccHHH---HH
Q psy9977 92 DDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-ITVMEC---L-REVQCDGAVLVTTPQAVSIED---VR 163 (192)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-~~~l~~---~-~~~~ad~viiv~~~~~~~~~~---~~ 163 (192)
.. .....+.++.+ .+ +.+|+|||.+.+...... ...+.. + ....-|.++.|+++....... ..
T Consensus 68 r~-------dl~~~~~~L~~-~~-~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~ 138 (323)
T COG0523 68 RD-------DLLPALERLLR-RR-DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE 138 (323)
T ss_pred cc-------hhHHHHHHHHh-cc-CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH
Confidence 11 23345666666 44 679999999997654411 111111 0 011345678888876443222 23
Q ss_pred HHHHHhHhcCCceeeEEeccCccCC
Q psy9977 164 KEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 164 ~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
.+.++++...+ +|+||.|.+.
T Consensus 139 ~~~~Qia~AD~----ivlNK~Dlv~ 159 (323)
T COG0523 139 LAEDQLAFADV----IVLNKTDLVD 159 (323)
T ss_pred HHHHHHHhCcE----EEEecccCCC
Confidence 34445554433 8999998743
No 214
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.43 E-value=0.00028 Score=49.06 Aligned_cols=38 Identities=39% Similarity=0.488 Sum_probs=33.5
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.++.+..|+||||++..++..++..|.+|++++.+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 34558899999999999999999999999999998664
No 215
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.43 E-value=0.0028 Score=44.95 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... .....+ ..+|.+++|.+.... +.... ..+..+...+.+++ +|+||.|.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~-~~~~~~--~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~ii-iv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSY-EVSRSL--AACEGALLLVDATQGVEAQTL-ANFYLALENNLEII-PVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHH-HHHHHH--HhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCCEE-EEEECCCC
Confidence 467788999997543322 111112 249999999988643 22222 22233334566655 89999985
No 216
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.42 E-value=0.00039 Score=50.95 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=33.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.+..+.+..|+|||+++..++...++.|.+|++||++.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34444579999999999999999999999999999984
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=97.41 E-value=0.0034 Score=50.72 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=46.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..-++++|+|+.. .........+ ..+|.+++|+++...-.....+.+..+...+.+.+-+++||.|.
T Consensus 74 ~~~i~~iDtPGh~-~f~~~~~~~~--~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 74 NRHYAHVDCPGHA-DYVKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CcEEEEEECCCHH-HHHHHHHhhh--ccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 4567899999742 2222222222 25899999998876555666777777888888866567999986
No 218
>PRK00007 elongation factor G; Reviewed
Probab=97.41 E-value=0.0026 Score=55.04 Aligned_cols=68 Identities=28% Similarity=0.186 Sum_probs=51.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++.+.++|+|+..+.. ......+. .+|.+++|+++...-.....+++..+.+.+.+.+ +++||.|..
T Consensus 73 ~~~~~~liDTPG~~~f~-~ev~~al~--~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~ 140 (693)
T PRK00007 73 KDHRINIIDTPGHVDFT-IEVERSLR--VLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT 140 (693)
T ss_pred CCeEEEEEeCCCcHHHH-HHHHHHHH--HcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 57889999999754322 22332222 4899999999877767777888999999999987 999999964
No 219
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.41 E-value=0.00051 Score=56.93 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=36.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
.+.++++..|+||||++..++...+++|.+|+++-++....
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~ 304 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRA 304 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHH
Confidence 45667799999999999999999999999999999986643
No 220
>PLN03126 Elongation factor Tu; Provisional
Probab=97.40 E-value=0.003 Score=52.18 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=48.9
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+++.+.++|+|+... .....+..+ ..+|.+++|+++...-...+.+.+..+...+.+.+-+++||.|..
T Consensus 142 ~~~~i~liDtPGh~~-f~~~~~~g~--~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 142 ENRHYAHVDCPGHAD-YVKNMITGA--AQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred CCcEEEEEECCCHHH-HHHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 456789999996432 222222222 248999999988876667778888888888888666889999863
No 221
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.40 E-value=2.2e-05 Score=56.33 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=23.7
Q ss_pred cEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHH
Q psy9977 119 DYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVR 163 (192)
Q Consensus 119 D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~ 163 (192)
.++++|.|-.++.. +.. .+|.+++|..+....+..+.
T Consensus 105 ~~~v~e~pLL~E~~----~~~----~~D~vi~V~a~~e~ri~Rl~ 141 (180)
T PF01121_consen 105 KVVVVEIPLLFESG----LEK----LCDEVIVVYAPEEIRIKRLM 141 (180)
T ss_dssp SEEEEE-TTTTTTT----GGG----GSSEEEEEE--HHHHHHHHH
T ss_pred CEEEEEcchhhhhh----Hhh----hhceEEEEECCHHHHHHHHH
Confidence 89999999776642 223 39999999988665555443
No 222
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.38 E-value=0.0043 Score=43.17 Aligned_cols=66 Identities=24% Similarity=0.215 Sum_probs=40.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+....... .......+|.++++.+.. ..+.+.+.+++..+.. .+.+++ ++.||.|.
T Consensus 48 ~~~~~l~D~~G~~~~~~~---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~piv-vv~nK~D~ 117 (164)
T smart00175 48 RVKLQIWDTAGQERFRSI---TSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIM-LVGNKSDL 117 (164)
T ss_pred EEEEEEEECCChHHHHHH---HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEEchhc
Confidence 456778898874322211 111112589888888775 3466666666666554 345554 88898874
No 223
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=97.38 E-value=0.006 Score=47.11 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=83.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
..++|+++++...+||=|.+..|.+.+.++|.++-++-....+ -+ . ...
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTG-im----------------------i-a~~------- 159 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTG-IM----------------------I-AGY------- 159 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHH-HH----------------------C-HSE-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCce-EE----------------------E-ecC-------
Confidence 6789999999999999999999999999999999888776442 10 0 000
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH-H-HHHHhhhhcCCeEEEecCCCcc-----
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI-T-VMECLREVQCDGAVLVTTPQAV----- 157 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~-~-~l~~~~~~~ad~viiv~~~~~~----- 157 (192)
+..... .........++.++.... ++.|+|+|...+.+..+.. . .+.-+.-++.|.+|+.-.|...
T Consensus 160 Gv~iDa------v~~DFvaGavE~~v~~~~-~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~ 232 (301)
T PF07755_consen 160 GVPIDA------VPSDFVAGAVEALVPEAA-EEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGF 232 (301)
T ss_dssp C--GGG------SBGGGHHHHHHHHHHHHC-CC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTS
T ss_pred Ceeccc------hhhhhHHHHHHHHHHhhC-cCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCC
Confidence 000000 011134566777777766 3569999999987765442 2 2222223479999999998443
Q ss_pred ------cHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 158 ------SIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 158 ------~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
++++..++++.+... ..+++|+-+|-.+.
T Consensus 233 p~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l 269 (301)
T PF07755_consen 233 PHYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSGL 269 (301)
T ss_dssp TTSC---HHHHHHHHHHCCCGC---EEEEEECC-TTS
T ss_pred CcCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCCC
Confidence 333444444444332 34488898996553
No 224
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0065 Score=46.93 Aligned_cols=145 Identities=18% Similarity=0.259 Sum_probs=93.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
..+++++.++.--+||=|.+..|...+.+.|+++-++-..+.+ -+ . ...++.+
T Consensus 147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg-il----------------------~-~~~gvvv--- 199 (339)
T COG3367 147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG-IL----------------------I-ADDGVVV--- 199 (339)
T ss_pred CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCcee-eE----------------------E-ecCceEe---
Confidence 4679999999999999999999999999999999888777442 11 0 0111111
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-HHHHHHhhhhcCCeEEEecCCCcccHH---
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-ITVMECLREVQCDGAVLVTTPQAVSIE--- 160 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-~~~l~~~~~~~ad~viiv~~~~~~~~~--- 160 (192)
.. + ........++.+.-.+.+.++|+|+|...+++..+. ...+..+.-++.|.++++-+|......
T Consensus 200 ----da----v--~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P 269 (339)
T COG3367 200 ----DA----V--VMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFP 269 (339)
T ss_pred ----cc----h--hHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCC
Confidence 00 0 111233445555544442499999999998877655 223333334579999999998765443
Q ss_pred ----HHHHHHHHhHhc-CCceeeEEeccCcc
Q psy9977 161 ----DVRKEITFCKKT-NIKILGLIENMSGY 186 (192)
Q Consensus 161 ----~~~~~~~~l~~~-~~~~~g~v~N~~~~ 186 (192)
.++..++..+.. +.+++++.+|--+.
T Consensus 270 ~~ip~leevi~l~e~l~~a~Vvgi~lNtr~~ 300 (339)
T COG3367 270 EPIPPLEEVIALYELLSNAKVVGIALNTRNL 300 (339)
T ss_pred CcCCCHHHHHHHHHHccCCcEEEEEeccccc
Confidence 233334433332 37889999985543
No 225
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.36 E-value=0.019 Score=43.20 Aligned_cols=72 Identities=11% Similarity=-0.044 Sum_probs=44.7
Q ss_pred CCcEEEEeCCCCCCh------h-HHH----HHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHhcCCceeeEEeccC
Q psy9977 117 DVDYLIIDTPPGTSD------E-HIT----VMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCKKTNIKILGLIENMS 184 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~------~-~~~----~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~g~v~N~~ 184 (192)
..|+.++|+|+.... . ... .+..+.....+.+++|+++... .-....++.+.+...+.+.+ +|+||.
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti-~ViTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTI-GVITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEE-EEEECC
Confidence 389999999987631 1 111 1222222244567777765432 33445678888888888766 899999
Q ss_pred ccCCC
Q psy9977 185 GYTCP 189 (192)
Q Consensus 185 ~~~~~ 189 (192)
|...+
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 87543
No 226
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.35 E-value=0.00034 Score=50.50 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=31.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh----------CCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD----------KGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~----------~g~~vlliD~d~~~ 47 (192)
-+.++.+.+|+||||++.++|..++. .+.+|++++++...
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 35677799999999999999999997 67899999999664
No 227
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=97.35 E-value=0.0015 Score=49.10 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=87.1
Q ss_pred cEEEEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-CccccCCC-Ccc--------cccC
Q psy9977 6 KHVILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQCPEG-WVP--------VYTD 74 (192)
Q Consensus 6 ~~~i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~~~~-~~~--------~~~~ 74 (192)
+|-|.|+++ -+|.||-.+|+.++..|..+|++|.++-+||.-.-=+-.+..-.+ +..-...+ ..+ ....
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 466777765 589999999999999999999999999999652110101111111 00000111 111 1112
Q ss_pred CCCceEEEeeccccccC----Cccccc-----CCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCCh----hHHHHHHHh
Q psy9977 75 ASQTLAVMSIGFLLKNR----DDAIIW-----RGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSD----EHITVMECL 140 (192)
Q Consensus 75 ~~~~l~~~~~~~~~~~~----~~~~~~-----~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~----~~~~~l~~~ 140 (192)
....-..++.|..+..- +....+ --|+....+.+.+.... ....|++|++.++..++ ++..++..+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~~~~~Dv~iiEiGGTVGDIEs~pFlEAirQl 160 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKKPEPDVVIIEIGGTVGDIESLPFLEAIRQL 160 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHCCCT-SEEEEEEESETTSCCCHHHHHHHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcCCCCCCEEEEecCCcccccccccHHHHHHHH
Confidence 22333344444333210 000000 12455666776666665 24799999999987665 333344443
Q ss_pred hh---------hcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEE
Q psy9977 141 RE---------VQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLI 180 (192)
Q Consensus 141 ~~---------~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v 180 (192)
.. -+.+.+-.+-..+...-.-++...+.|+..|+...-+|
T Consensus 161 ~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilv 209 (276)
T PF06418_consen 161 RNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILV 209 (276)
T ss_dssp HHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEE
T ss_pred HHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEE
Confidence 31 11222222334556677788899999999998876333
No 228
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.34 E-value=0.00029 Score=53.22 Aligned_cols=37 Identities=49% Similarity=0.649 Sum_probs=33.0
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++.|-.|+||||+|..|+..+...|++|.+++.|.-
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 4667999999999999999999999999999988754
No 229
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.32 E-value=0.0034 Score=45.34 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=40.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.+.++|+|+.... ....+... ..+|.+++|++..........+.+......+.+++ +++||.|..
T Consensus 66 ~~~~~~i~DtpG~~~~-~~~~~~~~--~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPGHASL-IRTIIGGA--QIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCCcHHH-HHHHHHHH--hhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 4788999999975321 11222221 13789999988865332233333333444566655 899998853
No 230
>PRK06762 hypothetical protein; Provisional
Probab=97.31 E-value=0.00036 Score=49.26 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=29.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.+.++.|..|+||||+|..|+..+ |..+.+++.|...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 3445556999999999999999888 4468888877554
No 231
>PRK12739 elongation factor G; Reviewed
Probab=97.30 E-value=0.0064 Score=52.69 Aligned_cols=68 Identities=25% Similarity=0.163 Sum_probs=50.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++.++++|+|+.... .......+. .+|.+++|+++...-......++..+...+.+.+ +++||.|..
T Consensus 71 ~~~~i~liDTPG~~~f-~~e~~~al~--~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~ 138 (691)
T PRK12739 71 KGHRINIIDTPGHVDF-TIEVERSLR--VLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRI 138 (691)
T ss_pred CCEEEEEEcCCCHHHH-HHHHHHHHH--HhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 5788999999975432 222332222 4899999999876656667788888888899887 999999964
No 232
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.29 E-value=0.0043 Score=51.35 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCChhH-----HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH-----ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~-----~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
...+.++|+|+...... ..........++|.+++|++.....-.....+.+.+++.+.+++ +|+||.|.
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl 158 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDD 158 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccC
Confidence 45678899987432110 00000001125999999999875433334566777777777766 99999985
No 233
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.29 E-value=0.0058 Score=42.71 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
..+.+-+.|+++...... .... .-..+|.+++|.+.+ ..+...+...++.+.+. +.+++ +|.||.|.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~--~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~i-vv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQT--MHAS-YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCI-VVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhh--hhHH-HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEECccC
Confidence 356778889986433211 1111 112589988888875 44666666677766543 56655 99999885
No 234
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.29 E-value=0.00089 Score=49.56 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=42.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-------cHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-------SIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-------~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.++|+|+.... .......+ ..+|.+++|++.... ....+.+.+......+.+.+-+++||.|..
T Consensus 75 ~~~~i~liDtpG~~~~-~~~~~~~~--~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 75 EKYRFTILDAPGHRDF-VPNMITGA--SQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred CCeEEEEEECCChHHH-HHHHHHHh--hhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 5778999999964322 12222221 248999999888753 222344444555556655555899999864
No 235
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00043 Score=46.02 Aligned_cols=30 Identities=47% Similarity=0.737 Sum_probs=23.1
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+++|..|+||||+|..||..+ |..++ ++|
T Consensus 2 I~I~G~~gsGKST~a~~La~~~---~~~~i--~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL---GFPVI--SMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---TCEEE--EEH
T ss_pred EEEECCCCCCHHHHHHHHHHHH---CCeEE--Eec
Confidence 4556888999999999998877 66664 444
No 236
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.28 E-value=0.0016 Score=48.91 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=34.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.+.++.+..|+|||+++.+++...+++|.+++++.++...
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHP 61 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCH
Confidence 4555568999999999999999988999999999998653
No 237
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.27 E-value=9.9e-05 Score=53.64 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=25.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|++|+++ |.-|+||||++..|+. .|.. ++|+|.-
T Consensus 2 ~~~i~lt-G~~gsGKst~~~~l~~----~g~~--~i~~D~~ 35 (194)
T PRK00081 2 MLIIGLT-GGIGSGKSTVANLFAE----LGAP--VIDADAI 35 (194)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH----cCCE--EEEecHH
Confidence 5677777 6677999999977764 4665 5888854
No 238
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.27 E-value=0.00055 Score=52.07 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=34.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..+.++++..|+|||+++.++|...+++|.+|++++++.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 356667799999999999999999999999999999984
No 239
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.27 E-value=0.00038 Score=54.73 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=34.4
Q ss_pred EEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLCGP 48 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~~~ 48 (192)
.++.|-.|+||||++..|+..|. +.|++|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 46778899999999999999998 5999999999996554
No 240
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.26 E-value=0.00045 Score=51.33 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.0
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~ 47 (192)
+.++.+..|+|||+++..++...+++ |.+|+++.++...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 44455888999999999999999998 9999999998653
No 241
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.25 E-value=0.0079 Score=42.07 Aligned_cols=66 Identities=24% Similarity=0.211 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+...... +....-..+|.++++.+.+. .+.+.+.+.++.+.. .+.+++ +|.||.|.
T Consensus 51 ~~~l~i~D~~G~~~~~~---~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl 120 (165)
T cd01864 51 RVKLQIWDTAGQERFRT---ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLL-LIGNKCDL 120 (165)
T ss_pred EEEEEEEECCChHHHHH---HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECccc
Confidence 46789999997532211 11111125899888888764 466777777776654 345555 89999985
No 242
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.24 E-value=0.0033 Score=54.43 Aligned_cols=68 Identities=24% Similarity=0.141 Sum_probs=48.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+++-+.++|+|+...... .....+. .+|.+++|++....-......++..+.+.+.+.+ +++||.|..
T Consensus 73 ~~~~i~liDTPG~~~~~~-~~~~~l~--~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 140 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTV-EVERSLR--VLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKT 140 (689)
T ss_pred CCeEEEEEECCCCcchhH-HHHHHHH--HhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 577899999997654322 2222221 4899999999876555556677778888888876 899999964
No 243
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.24 E-value=0.0024 Score=52.04 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCChhH-------HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH-------ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~-------~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+..+.|+|+|+...... ...... ..++|.+++|+++...-......+.+.+++.+.+++ +|+||.|.
T Consensus 46 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~--~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~ 119 (429)
T TIGR03594 46 GREFILIDTGGIEEDDDGLDKQIREQAEIA--IEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDG 119 (429)
T ss_pred CeEEEEEECCCCCCcchhHHHHHHHHHHHH--HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccC
Confidence 44688899987532110 011111 125899999999876444444567777777777766 89999985
No 244
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.23 E-value=0.00076 Score=48.08 Aligned_cols=41 Identities=37% Similarity=0.290 Sum_probs=33.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+..|.| .|-.|+||||++..|+..|...+..+.++|.|.-
T Consensus 6 ~~~~I~i-~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 6 NGYVIWI-TGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCEEEE-EcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 3445555 5888899999999999999988889999987643
No 245
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.23 E-value=0.0077 Score=45.96 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=28.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
-+.++++..|+||||+...+...+...+.+++.|+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 35666688899999999999888877777887776
No 246
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.23 E-value=0.0082 Score=49.08 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=30.4
Q ss_pred cCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 144 QCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 144 ~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+|.+++|++..........+++..+.+.+.+.+ +++||.|.
T Consensus 255 ~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl 296 (435)
T PRK00093 255 RADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDL 296 (435)
T ss_pred HCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 4888888888876555555566666666677665 88998875
No 247
>COG4240 Predicted kinase [General function prediction only]
Probab=97.22 E-value=0.00066 Score=50.00 Aligned_cols=41 Identities=34% Similarity=0.422 Sum_probs=36.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCC-CeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKG-FKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g-~~vlliD~d~ 45 (192)
..+.|..+|+-.|+||||+|+.+-..|+.+| .+|+...+|-
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 4467788889999999999999999999998 6999998874
No 248
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.21 E-value=0.00051 Score=49.22 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=29.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+-+.++ |..|+|||.+|..++..+.++|++|++++..
T Consensus 48 ~~l~l~-G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILY-GPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp -EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred eEEEEE-hhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 445666 4679999999999999999999999999875
No 249
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.21 E-value=0.00074 Score=51.55 Aligned_cols=39 Identities=31% Similarity=0.560 Sum_probs=34.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~ 46 (192)
.+.++++..|+||||++.++|..++.. |.+|+++.++..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 356677999999999999999999886 999999999764
No 250
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.19 E-value=0.0029 Score=53.81 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=43.0
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.|.+.++|+|+..+... ...+. .+|.+++|++............+......+++++ +++||.|..
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~-----~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiI-vViNKiDl~ 139 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLA-----ACEGALLVVDASQGVEAQTLANVYLALENDLEII-PVLNKIDLP 139 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHH-----HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCC
Confidence 467889999997554321 12233 4999999999875433334444444455678765 999999963
No 251
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.19 E-value=0.013 Score=43.69 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=18.4
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHH
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALG 30 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~ 30 (192)
..+.+|+++ +..|+||||+.-.|...
T Consensus 37 ~~~~~i~iv-G~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVV-GPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHhh
Confidence 345677777 55566999999777543
No 252
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.19 E-value=0.0072 Score=44.09 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=29.0
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..|+++ +..|+||||+...+...+... .++.++..|..
T Consensus 2 ~~i~i~-G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~ 39 (199)
T TIGR00101 2 LKIGVA-GPVGSGKTALIEALTRALRQK-YQLAVITNDIY 39 (199)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcC
Confidence 345666 778899999999999888764 46777777755
No 253
>PRK04328 hypothetical protein; Provisional
Probab=97.18 E-value=0.0019 Score=48.82 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=33.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.+.++.+..|+|||+++..++...+++|.+++++.++...
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP 63 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH
Confidence 3444457788999999999999988899999999998653
No 254
>KOG3220|consensus
Probab=97.17 E-value=0.0003 Score=50.61 Aligned_cols=54 Identities=17% Similarity=0.342 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHH
Q psy9977 101 KKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVR 163 (192)
Q Consensus 101 ~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~ 163 (192)
...+.+.+++..+. ..|.+||+|.|=.++. -+..+ +..+++|+-+....++.+.
T Consensus 91 Ir~em~ke~~~~~l-~G~r~ivlDiPLLFE~----~~~~~----~~~tvvV~cd~~~Ql~Rl~ 144 (225)
T KOG3220|consen 91 IRKEMFKEILKLLL-RGYRVIVLDIPLLFEA----KLLKI----CHKTVVVTCDEELQLERLV 144 (225)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEechHHHHH----hHHhh----eeeEEEEEECcHHHHHHHH
Confidence 33456666666666 7999999999955543 23332 7778888877666555444
No 255
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.16 E-value=0.0087 Score=44.37 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+++............ .+|.+++|.+.. ..+.+.+...+..+.+. +.|++ +|.||.|-
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~----~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pii-lV~NK~Dl 118 (221)
T cd04148 49 ESTLVVIDHWEQEMWTEDSCMQY----QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPII-LVGNKSDL 118 (221)
T ss_pred EEEEEEEeCCCcchHHHhHHhhc----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEChhc
Confidence 56788999987651111112220 389998888775 55777777777766542 45554 99999885
No 256
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.16 E-value=0.0019 Score=49.04 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=36.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV 50 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~ 50 (192)
.+.++.+..|+|||+++.+++...++.|.+|++|..+.....+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 3444558889999999999999999999999999999775444
No 257
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.16 E-value=0.00088 Score=50.22 Aligned_cols=40 Identities=15% Similarity=0.395 Sum_probs=35.6
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~ 47 (192)
.+.++++..|+|||+++.+++..++.. |.+|+++.++...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 466777999999999999999999987 9999999998653
No 258
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0011 Score=46.27 Aligned_cols=36 Identities=39% Similarity=0.664 Sum_probs=31.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI 40 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vll 40 (192)
+++..|+++ +..|+||||++..+|..|.+.|++|.=
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeee
Confidence 456677777 888999999999999999999999853
No 259
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.15 E-value=0.013 Score=40.89 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=38.7
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+-|+|+|+...... .... .-..+|.++++.+.. ..+...+...++.+.+ .+.+++ +|.||.|-
T Consensus 50 ~~~~~i~D~~G~~~~~~--~~~~-~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~i-iv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRT--ITSS-YYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHH--HHHH-HhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEEChhc
Confidence 45667888876432211 1111 112588888888764 4466666666665554 245544 88898874
No 260
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.15 E-value=0.00099 Score=50.60 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=34.9
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~ 47 (192)
-+.++++..|+|||+++.++|..++.. |++|+++.++...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 577888999999999999999999996 6999999998664
No 261
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.14 E-value=0.012 Score=41.43 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
..+.+-|+|+++...... ..... ....+|.+++|.+.. ..+...+...++.+.+. +.|++ +|.||.|.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~-~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl 121 (170)
T cd04115 49 ERIKVQLWDTAGQERFRK-SMVQH-YYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI-LVGNKCDL 121 (170)
T ss_pred eEEEEEEEeCCChHHHHH-hhHHH-hhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 357788999876432211 11111 112588888888775 45677777777666543 45655 89999885
No 262
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.14 E-value=0.00017 Score=54.15 Aligned_cols=36 Identities=36% Similarity=0.321 Sum_probs=25.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
|.+|+++ |.-|+||||++.-|+.. .|.+| ||+|.-.
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~v--iDaD~ia 36 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE---HHIEV--IDADLVV 36 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH---cCCeE--EehHHHH
Confidence 4678888 56679999998555422 37777 9999554
No 263
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.13 E-value=0.0011 Score=47.64 Aligned_cols=40 Identities=40% Similarity=0.610 Sum_probs=33.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.+.++.|..|+||||++..|+..+...|..+.++|.|...
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 4455557889999999999999999889899999988654
No 264
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.00089 Score=50.75 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=31.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
-+.++ |..|+|||.+|+++|..+.+.|++|+++...
T Consensus 107 nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 107 NLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 44555 8899999999999999999999999999764
No 265
>PTZ00416 elongation factor 2; Provisional
Probab=97.12 E-value=0.0054 Score=54.22 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=50.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..|-+.++|+|+..+... .....+ ..+|.+++|+++...-...+..+++.+...+.+.+ +++||.|..
T Consensus 90 ~~~~i~liDtPG~~~f~~-~~~~al--~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSS-EVTAAL--RVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHH-HHHHHH--hcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 356789999997654322 222222 24999999999887766778888888888888876 899999864
No 266
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.12 E-value=0.00093 Score=49.84 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=30.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC------CCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK------GFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~------g~~vlliD~d~~ 46 (192)
.+..+.+..|+|||+++..++...... +.+|+++|.+..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 344455888999999999999775543 479999999853
No 267
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.11 E-value=0.015 Score=40.53 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=41.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
....+.+.|+|+...... .... .-..+|.+++|.+.+ ..+...+..+++.+... +.+.+ +|.||.|.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~--~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSD--MVSN-YWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGV-LVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHH--HHHH-HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECccc
Confidence 356788999986422211 1111 123589999888876 44566666666666543 45544 88999885
No 268
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.11 E-value=0.013 Score=41.16 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=40.4
Q ss_pred CcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 118 VDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
..+.|.|+|+....... .... ...+|.++++.+.. ..+.+.+.++++.+++. +.+++ +|.||.|.
T Consensus 53 ~~~~i~Dt~G~~~~~~~-~~~~--~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRSI-TRSY--YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIM-LIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHHH-HHHH--hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECccc
Confidence 46788888764322111 1111 12588888888875 56777777777766542 45554 88899885
No 269
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.00082 Score=51.94 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=34.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHh----CC------CeEEEEeeCCCCCCCCc
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKD----KG------FKVGILDIDLCGPSVPH 52 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~----~g------~~vlliD~d~~~~~~~~ 52 (192)
..|+-+-||+||||++.-|+.+++. -| .+|++|.+....+++-.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~ 144 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILE 144 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHH
Confidence 4455589999999999999999884 24 47999999888766533
No 270
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.10 E-value=0.014 Score=40.49 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhcC---CceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKTN---IKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+......... ..-..+|.++++.++. ..+...+...+..+.... .+++ ++.||.|.
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~ 118 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAP---MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIA-LVGNKADL 118 (163)
T ss_pred EEEEEEEeCCchHHHHHHHH---HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccc
Confidence 55678889886432221111 1112488888888875 556777777777765443 4444 78898875
No 271
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=97.09 E-value=0.0064 Score=43.31 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=29.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.|-|+ +-.|=||||.|..+|...+-+|+||+++=+=
T Consensus 23 li~VY-tGdGKGKTTAAlGlalRAaG~G~rV~iiQFl 58 (178)
T PRK07414 23 LVQVF-TSSQRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred EEEEE-eCCCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence 34455 3456899999999999999999999998664
No 272
>PRK13351 elongation factor G; Reviewed
Probab=97.08 E-value=0.012 Score=50.97 Aligned_cols=66 Identities=18% Similarity=0.107 Sum_probs=48.5
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.++|+|+..+... ...+. .+|.+++|++............++.+...+.+++ +++||.|..
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~-----~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~ 138 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLR-----VLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRV 138 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHH-----hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCC
Confidence 467889999997643221 12232 4999999999876655566777788888888876 899999964
No 273
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.08 E-value=0.0056 Score=53.08 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=45.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... .... ....+|.+++|++++......+.+.+..+...+.|++ +++|+.|.
T Consensus 293 ~~~kItfiDTPGhe~F~~--mr~r-g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI-VViNKiDl 359 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSS--MRSR-GANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII-VAINKIDK 359 (742)
T ss_pred CceEEEEEECCcHHHHHH--HHHH-HHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE-EEEECCCc
Confidence 357889999997432211 1111 1124999999998876555566667777777888866 99999985
No 274
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.08 E-value=0.016 Score=40.50 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+....... ... .-..++.++++.+.. ..+...+.+.++.+.+. +.+++ +|.||.|.
T Consensus 51 ~~~~~l~D~~g~~~~~~~--~~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~-vv~nK~Dl 120 (165)
T cd01868 51 TIKAQIWDTAGQERYRAI--TSA-YYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIM-LVGNKSDL 120 (165)
T ss_pred EEEEEEEeCCChHHHHHH--HHH-HHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccc
Confidence 456778888764322211 111 112477777776664 55666666666666542 34443 88888875
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.0012 Score=48.92 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=26.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHH-------------hCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLK-------------DKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la-------------~~g~~vlliD~d 44 (192)
..|.++ |..|+||||+|..+|..+. +.+++++++|.+
T Consensus 18 ~nIlIt-G~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~ 67 (226)
T PHA00729 18 VSAVIF-GKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELP 67 (226)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHH
Confidence 345555 6789999999999999875 345556666654
No 276
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.06 E-value=0.0034 Score=51.24 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=44.1
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc--ccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA--VSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~--~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.+.++|+|+...... .....+ ..+|.+++|++... .-.....+.+..++..+.+.+-+++||.|..
T Consensus 82 ~~~~i~liDtpG~~~~~~-~~~~~~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVK-NMITGA--SQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred CCeEEEEEECCCcccchh-hHhhch--hcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 578899999997432211 122211 24899999988875 3334455555666666765555899999863
No 277
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.03 E-value=0.0015 Score=39.09 Aligned_cols=30 Identities=47% Similarity=0.607 Sum_probs=25.7
Q ss_pred EeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 12 ~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
+.+..|+||||++..|+..| .+.++.++|.
T Consensus 4 i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 4 ITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 35888999999999999999 6788888876
No 278
>PF13245 AAA_19: Part of AAA domain
Probab=97.02 E-value=0.0019 Score=39.46 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=29.7
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC----CCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK----GFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~----g~~vlliD~d 44 (192)
-+.++.+-.|+|||+++++++..+... |.+|+++-..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 345667888999999988888888865 8899998543
No 279
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=97.02 E-value=0.0059 Score=48.00 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=34.8
Q ss_pred cEEEEEEe-CCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 6 KHVILVLS-GKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 6 ~~~i~~~s-~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.++|.|-+ .-||+|||-++..|+..|.++|+++.++-=-+.+
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 45666655 3589999999999999999999999999766554
No 280
>PF13173 AAA_14: AAA domain
Probab=97.01 E-value=0.0012 Score=44.64 Aligned_cols=40 Identities=30% Similarity=0.389 Sum_probs=31.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.++++++ |--|+||||++.+++..+. ...+++++|+|-..
T Consensus 2 ~~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 3566666 5556999999999998887 67799999998553
No 281
>PLN02422 dephospho-CoA kinase
Probab=97.01 E-value=0.00021 Score=53.24 Aligned_cols=34 Identities=35% Similarity=0.415 Sum_probs=25.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|++|+++ |.-|+||||++..|+ +.|..| +|+|.-
T Consensus 1 M~~iglt-G~igsGKstv~~~l~----~~g~~~--idaD~~ 34 (232)
T PLN02422 1 MRVVGLT-GGIASGKSTVSNLFK----SSGIPV--VDADKV 34 (232)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCeE--EehhHH
Confidence 3567777 677899999997776 457776 888854
No 282
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.00 E-value=0.011 Score=51.64 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+......... .. ...+|.+++|++.+......+...+......+++++ +++|+.|.
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~-rg--a~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiI-VviNKiDl 401 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRA-RG--AQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPII-VAINKIDK 401 (787)
T ss_pred CEEEEEEECCCCccchhHHH-hh--hhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEE-EEEECccc
Confidence 45688999997543222111 11 124899999998876666666777777777888866 99999985
No 283
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.00 E-value=0.013 Score=42.60 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=36.5
Q ss_pred CCcEEEEeCCCCCCh---h----HHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHh---cCCceeeEEeccCc
Q psy9977 117 DVDYLIIDTPPGTSD---E----HITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCKK---TNIKILGLIENMSG 185 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~---~----~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~---~~~~~~g~v~N~~~ 185 (192)
.+.++++|+|+.... . ....+.. ...+|.++++.+.... +......+.+.++. .+.+++ +|+||.|
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~--~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~vi-iV~NK~D 164 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEE--VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMI-LVLNKID 164 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHH--HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEE-EEEEccc
Confidence 347888888875321 0 0111111 1258888888877633 33334334444443 344544 8999988
Q ss_pred c
Q psy9977 186 Y 186 (192)
Q Consensus 186 ~ 186 (192)
-
T Consensus 165 l 165 (204)
T cd01878 165 L 165 (204)
T ss_pred c
Confidence 5
No 284
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.00 E-value=0.02 Score=41.55 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+........ -.. -..+|.+++|.+.. ..+.+.+.+.++.+... ..++ -+|.|+.|.
T Consensus 54 ~~~l~l~D~~G~~~~~~~~-~~~--~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pi-ivVgNK~Dl 122 (199)
T cd04110 54 RVKLQIWDTAGQERFRTIT-STY--YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCK-VLVGNKNDD 122 (199)
T ss_pred EEEEEEEeCCCchhHHHHH-HHH--hCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECccc
Confidence 3467788888643221111 111 12488888887764 55677777777766543 3444 488999885
No 285
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.00 E-value=0.021 Score=40.07 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=40.3
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.+.|+|+........ -.. ...+|.++++.+.. ..+.+.+.+.+..+.+. +.+++ +|.||.|.
T Consensus 51 ~~~l~l~D~~g~~~~~~~~-~~~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl 120 (167)
T cd01867 51 KIKLQIWDTAGQERFRTIT-TAY--YRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM-LVGNKCDM 120 (167)
T ss_pred EEEEEEEeCCchHHHHHHH-HHH--hCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECccc
Confidence 4577888988744322211 111 12589888887653 55666666666666543 45544 88899885
No 286
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.00 E-value=0.018 Score=40.03 Aligned_cols=67 Identities=24% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... ..... ...+|.++++.+.. ..+...+..++..+.. .+.++ -++.||.|.
T Consensus 47 ~~~~l~l~D~~G~~~~~~-~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~ 117 (161)
T cd04113 47 KRVKLQIWDTAGQERFRS-VTRSY--YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVV-ILVGNKSDL 117 (161)
T ss_pred EEEEEEEEECcchHHHHH-hHHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEEchhc
Confidence 356788999986532211 11111 12588888888775 4466666666665542 35554 488999875
No 287
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.00 E-value=0.033 Score=38.88 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=39.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... ..... ...+|.+++|++... .+.......+..+.+ .+.|++ +++||.|.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~-~~~~~--~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRS-LWDKY--YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLL-ILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHH-HHHHH--hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEE-EEEEcccc
Confidence 356889999986433221 11111 125898888888753 345555544444322 356655 99999985
No 288
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.99 E-value=0.022 Score=39.48 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhHh-c--CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCKK-T--NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~~-~--~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... .... .-..+|.+++|.+.+. .+.+.+...+..+.. . +.+++ ++.|+.|-
T Consensus 48 ~~~l~~~D~~G~~~~~~--~~~~-~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~nK~D~ 117 (161)
T cd01861 48 TVRLQLWDTAGQERFRS--LIPS-YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIV-LVGNKTDL 117 (161)
T ss_pred EEEEEEEECCCcHHHHH--HHHH-HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE-EEEEChhc
Confidence 34678899986433221 1111 1125888888888763 456666666666543 2 25554 99999886
No 289
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.97 E-value=0.022 Score=40.85 Aligned_cols=66 Identities=18% Similarity=0.091 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+++...... +....-..+|.+++|.+.. ..+...+..+++.+.+. ..+ +-+|.||.|.
T Consensus 48 ~~~~~i~Dt~g~~~~~~---~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl 117 (188)
T cd04125 48 IIKLQIWDTNGQERFRS---LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDL 117 (188)
T ss_pred EEEEEEEECCCcHHHHh---hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCC
Confidence 46778889887432221 1111112589988888775 55666666666666543 333 4589999885
No 290
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.97 E-value=0.0015 Score=47.96 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|..+...+|++. |.+|+||||++..|+..+.. .++.++..|..
T Consensus 1 ~~~~~g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 1 MDKPKGIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCCCCeEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 455666666666 78889999999999988764 45666666643
No 291
>KOG0460|consensus
Probab=96.96 E-value=0.0029 Score=49.31 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=77.0
Q ss_pred CccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccccccCCcccc
Q psy9977 17 GVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFLLKNRDDAII 96 (192)
Q Consensus 17 g~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 96 (192)
.-||||+++++-+.||++|.-.. .+.| .+...-.....++.+-.+...+..+.
T Consensus 64 DHGKTTLTaAITkila~~g~A~~-~kyd----------------------eID~APEEkaRGITIn~aHveYeTa~---- 116 (449)
T KOG0460|consen 64 DHGKTTLTAAITKILAEKGGAKF-KKYD----------------------EIDKAPEEKARGITINAAHVEYETAK---- 116 (449)
T ss_pred cCCchhHHHHHHHHHHhcccccc-ccHh----------------------hhhcChhhhhccceEeeeeeeeeccc----
Confidence 46999999999999999874321 1111 01111112234445444443333310
Q ss_pred cCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCce
Q psy9977 97 WRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKI 176 (192)
Q Consensus 97 ~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (192)
+.|- =+|||+-.+..- +.+.. ..+.|..|+|+.+....+-++++.+-.-++.|++.
T Consensus 117 -------------------RhYa--H~DCPGHADYIK-NMItG--aaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ 172 (449)
T KOG0460|consen 117 -------------------RHYA--HTDCPGHADYIK-NMITG--AAQMDGAILVVAATDGPMPQTREHLLLARQVGVKH 172 (449)
T ss_pred -------------------cccc--cCCCCchHHHHH-HhhcC--ccccCceEEEEEcCCCCCcchHHHHHHHHHcCCce
Confidence 2333 368886544322 22222 22689999999999888999999888889999999
Q ss_pred eeEEeccCccCC
Q psy9977 177 LGLIENMSGYTC 188 (192)
Q Consensus 177 ~g~v~N~~~~~~ 188 (192)
+-+.+|++|.+.
T Consensus 173 ivvfiNKvD~V~ 184 (449)
T KOG0460|consen 173 IVVFINKVDLVD 184 (449)
T ss_pred EEEEEecccccC
Confidence 989999999763
No 292
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.96 E-value=0.00062 Score=49.81 Aligned_cols=38 Identities=24% Similarity=0.121 Sum_probs=26.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
.+.+|+++ |.-|+||||++..|+.. .|.+| +|+|....
T Consensus 5 ~~~~IglT-G~iGsGKStv~~~l~~~---lg~~v--idaD~i~~ 42 (204)
T PRK14733 5 NTYPIGIT-GGIASGKSTATRILKEK---LNLNV--VCADTISR 42 (204)
T ss_pred ceEEEEEE-CCCCCCHHHHHHHHHHH---cCCeE--EeccHHHH
Confidence 34567777 66679999999776642 47774 88886543
No 293
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.96 E-value=0.026 Score=46.02 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=30.0
Q ss_pred cCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 144 QCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 144 ~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+|.+++|++........-.+++..+.+.+.+++ +|+||.|..
T Consensus 254 ~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl~ 296 (429)
T TIGR03594 254 RADVVLLVLDATEGITEQDLRIAGLILEAGKALV-IVVNKWDLV 296 (429)
T ss_pred hCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEECcccC
Confidence 4888888888775444444556666666677765 889998853
No 294
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.95 E-value=0.014 Score=41.45 Aligned_cols=66 Identities=21% Similarity=0.193 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.|.+.++|+|+.......... ....+|.++++.+.+ ..+.+.+....+.+.+ .+.+++ ++.||.|.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 118 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQK---YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV-LVGNKSDL 118 (180)
T ss_pred EEEEEEEECCChHhhHHHHHH---HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEchhh
Confidence 567788998865332211111 111377766666544 4456666655554432 345555 89998885
No 295
>PRK12377 putative replication protein; Provisional
Probab=96.94 E-value=0.0016 Score=49.18 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=30.5
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.++.|..|+|||.++.++|..+.++|++|.++...
T Consensus 104 l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 104 FVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 34457789999999999999999999999998775
No 296
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.94 E-value=0.01 Score=50.56 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=40.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..|.+.++|+|+...... .....+ ..+|.+++|++............+....+.+++++ +++||.|.
T Consensus 68 ~~~~l~liDTPG~~dF~~-~v~~~l--~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiI-iViNKiDl 134 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSY-EVSRSL--AACEGALLLVDAAQGIEAQTLANVYLALENDLEII-PVINKIDL 134 (595)
T ss_pred CEEEEEEEECCCcHHHHH-HHHHHH--HhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCC
Confidence 357889999997654321 121122 14999999999875432233333333334577755 99999985
No 297
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.94 E-value=0.00046 Score=50.18 Aligned_cols=34 Identities=38% Similarity=0.423 Sum_probs=24.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++|+++ |.-|+||||++..|+..+ |..| +|+|.-
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~~ 35 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADIY 35 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcHH
Confidence 467777 777899999997776432 7766 688854
No 298
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.94 E-value=0.0017 Score=52.88 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=35.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~~ 47 (192)
-+.++++..|+|||+++.++|..++ ++|++|+++.++...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 4667889999999999999999998 689999999988654
No 299
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.94 E-value=0.00042 Score=49.68 Aligned_cols=32 Identities=41% Similarity=0.439 Sum_probs=23.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
|+++ |..|+||||++..|+. .|..| +|+|.-.
T Consensus 2 i~it-G~~gsGKst~~~~l~~----~g~~~--i~~D~~~ 33 (179)
T cd02022 2 IGLT-GGIGSGKSTVAKLLKE----LGIPV--IDADKIA 33 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHH----CCCCE--EecCHHH
Confidence 4555 7889999999988775 57665 7887543
No 300
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.015 Score=47.40 Aligned_cols=174 Identities=15% Similarity=0.156 Sum_probs=89.7
Q ss_pred EEEEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC----CCCcc-----cCCCCCC-ccccCCCCcccccCC
Q psy9977 7 HVILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP----SVPHL-----LNIENSD-VHQCPEGWVPVYTDA 75 (192)
Q Consensus 7 ~~i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~----~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~ 75 (192)
|-|.|+++ -+|.||-..|+.|++.|..+|++|..+-+||.-. .++-+ |-.++.. ....+.-.+-.....
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~~ 81 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDVN 81 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCCC
Confidence 55666655 4789999999999999999999999999986521 00000 0000000 000001111111111
Q ss_pred CCceEEEeeccccccC----Cccccc-----CCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH----HHHHHHhhh
Q psy9977 76 SQTLAVMSIGFLLKNR----DDAIIW-----RGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH----ITVMECLRE 142 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~----~~~~~~-----~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~----~~~l~~~~~ 142 (192)
.....-++.|..+..- .....+ --++.+..+++.+....+..+|++|+..++..++-. ..++.++..
T Consensus 82 l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~~~~DvvivEIGGTVGDIEslpFlEAiRQ~~~ 161 (533)
T COG0504 82 LSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAADSTADVVIVEIGGTVGDIESLPFLEAIRQLRL 161 (533)
T ss_pred ccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcCCCCCEEEEEeCCceecccccHHHHHHHHHHh
Confidence 2222222333222110 000000 013445567777766653349999999999776532 233333321
Q ss_pred ---------hcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEE
Q psy9977 143 ---------VQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLI 180 (192)
Q Consensus 143 ---------~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v 180 (192)
-+.+.+-..-..+...-.-++...+.|+..|+..--+|
T Consensus 162 e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii 208 (533)
T COG0504 162 ELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILI 208 (533)
T ss_pred hhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEE
Confidence 11222222222355555667788888888888766333
No 301
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.93 E-value=0.0019 Score=50.54 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=33.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+++.++ +..|+||||++.+++...++.|.+|++||+...
T Consensus 55 G~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 55 GRIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 94 (321)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence 3455566 568999999999999999999999999999743
No 302
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.92 E-value=0.0017 Score=47.41 Aligned_cols=35 Identities=40% Similarity=0.463 Sum_probs=27.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+|.+|+++ |+-|+||||+| ..+++.|.+| +|+|-.
T Consensus 1 ~~~iIglT-G~igsGKStva----~~~~~~G~~v--idaD~v 35 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVA----KILAELGFPV--IDADDV 35 (201)
T ss_pred CceEEEEe-cCCCCCHHHHH----HHHHHcCCeE--EEccHH
Confidence 47889999 77889999998 5555667777 777744
No 303
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=96.90 E-value=0.0055 Score=42.88 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=46.5
Q ss_pred CCCcEEEEeCCCCCC-----hhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTS-----DEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~-----~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
....+.++|+|+..+ .........+...+.|.+++|+++.. ++.-..+..++...+.|.+ +++||.|-
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~v-vvlN~~D~ 117 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVV-VVLNKMDE 117 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEE-EEEETHHH
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEE-EEEeCHHH
Confidence 357899999998432 22223334444567999999999975 5666678888888899977 99999874
No 304
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0052 Score=52.87 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=53.9
Q ss_pred CCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+|.+=+||+|+-.+. .....+.. +|..++|+++...-..++...+++..+.+.|.+ +++||.|..
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrv-----lDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~ 141 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRV-----LDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRL 141 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHh-----hcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECcccc
Confidence 488899999986543 22334444 899999999999999999999999999999987 999999873
No 305
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.89 E-value=0.0076 Score=39.69 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=35.7
Q ss_pred EEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-----cCCceeeEEeccCc
Q psy9977 120 YLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-----TNIKILGLIENMSG 185 (192)
Q Consensus 120 ~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-----~~~~~~g~v~N~~~ 185 (192)
+.+.|.++...... ...+. .+|.+++|.+.. ..+++.+.++++.+.. ..+|++ +|.||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~-----~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~pii-lv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLK-----KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPII-LVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHH-----HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEE-EEEE-TC
T ss_pred EEEEecCccceecccccchhh-----cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEE-EEEeccC
Confidence 56677765432211 11233 399999999765 4567777666555543 246654 8889875
No 306
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.88 E-value=0.019 Score=39.77 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+.......... . ...+|.++++.... ..+..........+.+ .+.+++ ++.||.|-
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~-~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-iv~NK~D~ 117 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDN-Y--HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL-LVGNKCDL 117 (164)
T ss_pred EEEEEEEECCChhhhhHHHHH-H--hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEcccc
Confidence 567788888874433221111 1 12477777766543 4455555555555443 345554 88998885
No 307
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.88 E-value=0.0057 Score=42.76 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=45.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+++.++|+|+......... .....+|.+++|++++..........+..++..+.+++ +|+||.|..
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~---~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~ 115 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRA---RGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFI-VALNKIDKP 115 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHH---HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEEceecc
Confidence 478999999997543221111 01124999999999876545555556666777788765 999999853
No 308
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.88 E-value=0.0029 Score=52.80 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=34.6
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCGPS 49 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~~~ 49 (192)
.+.++.+..|+|||+++.+++...+++ |.+|++|.++.....
T Consensus 32 s~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~ 74 (509)
T PRK09302 32 RPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPED 74 (509)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHH
Confidence 344455888999999999999988887 999999999876443
No 309
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.88 E-value=0.0017 Score=47.07 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=29.0
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCe----EEEEeeCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFK----VGILDIDL 45 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~----vlliD~d~ 45 (192)
|+|. |-+|+||||+|..|+..|.+.|.+ +.++..|.
T Consensus 2 IgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 2 IGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred EEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 4454 778899999999999999998876 66666653
No 310
>PRK05439 pantothenate kinase; Provisional
Probab=96.87 E-value=0.0028 Score=49.38 Aligned_cols=41 Identities=32% Similarity=0.292 Sum_probs=33.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHh--CCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKD--KGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~--~g~~vlliD~d~~ 46 (192)
.+.+|+|. |..|+||||+|..|+..+.+ .|.+|.++.+|-.
T Consensus 85 ~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 85 VPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 33455555 88889999999999999986 4789999999954
No 311
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=96.87 E-value=0.023 Score=47.19 Aligned_cols=174 Identities=15% Similarity=0.151 Sum_probs=88.8
Q ss_pred EEEEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-C---------ccccCCCCcccccCC
Q psy9977 7 HVILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-D---------VHQCPEGWVPVYTDA 75 (192)
Q Consensus 7 ~~i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~ 75 (192)
|-|.|+++ -+|.||-.+|+.++..|..+|++|..+-+||.-.-=+-.+..-.. + ........+-.....
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 81 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDTN 81 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCCC
Confidence 56666655 579999999999999999999999999999653210100111110 0 000000011111111
Q ss_pred CCceEEEeeccccccC----CcccccC-----CchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhH----HHHHHHhh
Q psy9977 76 SQTLAVMSIGFLLKNR----DDAIIWR-----GPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEH----ITVMECLR 141 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~----~~~~~~~-----~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~----~~~l~~~~ 141 (192)
...-.-++.|..+..- +....+. -|+.+..+.+.+.... ...+|++|+..++..++-. ..++..+.
T Consensus 82 l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~~~~~d~~i~EiGGTvGDiEs~pf~ea~rq~~ 161 (525)
T TIGR00337 82 LTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAKISGPDVVIVEIGGTVGDIESLPFLEAIRQFR 161 (525)
T ss_pred CcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcccCCCCEEEEEeCCccccccccHHHHHHHHHH
Confidence 1111122222222110 0000000 1344556666666544 3699999999999876633 33333332
Q ss_pred h--hcCCe-----EEEe--cCCCcccHHHHHHHHHHhHhcCCceeeEE
Q psy9977 142 E--VQCDG-----AVLV--TTPQAVSIEDVRKEITFCKKTNIKILGLI 180 (192)
Q Consensus 142 ~--~~ad~-----viiv--~~~~~~~~~~~~~~~~~l~~~~~~~~g~v 180 (192)
. ..-+. .++| ...+...-.-++..++.|+..|+...-++
T Consensus 162 ~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~ 209 (525)
T TIGR00337 162 NEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIII 209 (525)
T ss_pred HhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEE
Confidence 1 11122 2233 22344445556788888888888766333
No 312
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.00072 Score=51.22 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=29.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
-+.++ |..|+|||+++.+++..+.++|++|+++.+
T Consensus 100 nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 44444 778999999999999999999999988544
No 313
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.86 E-value=0.013 Score=42.24 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+...... .... ....+|.+++|.+.. ..+.+.+...+..+.+. +.+++ ++.||.|.
T Consensus 49 ~~~~~i~Dt~G~~~~~~--~~~~-~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~NK~Dl 118 (191)
T cd04112 49 KVKLQIWDTAGQERFRS--VTHA-YYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIM-LLGNKADM 118 (191)
T ss_pred EEEEEEEeCCCcHHHHH--hhHH-HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEcccc
Confidence 45678899987432211 1111 112589888888875 45666666666666543 44544 88899885
No 314
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.86 E-value=0.025 Score=39.54 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=33.9
Q ss_pred CcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhH---hcCCceeeEEeccCcc
Q psy9977 118 VDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCK---KTNIKILGLIENMSGY 186 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~---~~~~~~~g~v~N~~~~ 186 (192)
+.+.+.|+|+....... .-..+ ..+|.++++.+.+. .+.+.+...+..++ ..+.+.+ +|.||.|.
T Consensus 56 ~~~~~~D~~g~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i-~v~NK~D~ 124 (169)
T cd04114 56 IKLQIWDTAGQERFRSI-TQSYY--RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI-LVGNKIDL 124 (169)
T ss_pred EEEEEEECCCcHHHHHH-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccc
Confidence 45667788754322211 11111 14788777777653 34444444444443 2345544 88888875
No 315
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.86 E-value=0.00065 Score=49.64 Aligned_cols=33 Identities=39% Similarity=0.496 Sum_probs=25.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
|++|+++ |.-|+||||++..|+ ..|..| +|+|.
T Consensus 1 m~~igit-G~igsGKst~~~~l~----~~g~~v--id~D~ 33 (200)
T PRK14734 1 MLRIGLT-GGIGSGKSTVADLLS----SEGFLI--VDADQ 33 (200)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCeE--EeCcH
Confidence 3577888 667799999998776 357765 88883
No 316
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.85 E-value=0.0023 Score=50.09 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=33.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+++-++ +..|+||||++..++...++.|.++++||+.-.
T Consensus 56 ~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~ 94 (325)
T cd00983 56 RIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA 94 (325)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 455555 679999999999999999999999999998743
No 317
>PRK06217 hypothetical protein; Validated
Probab=96.85 E-value=0.0019 Score=46.39 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=25.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.|.|+ |-.|+||||++..|+..+ |.+ ++|.|.
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 456666 788899999999999776 554 577773
No 318
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.83 E-value=0.0022 Score=47.62 Aligned_cols=37 Identities=30% Similarity=0.253 Sum_probs=30.7
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHh--CCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKD--KGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~--~g~~vlliD~d~~ 46 (192)
|++. |..|+||||++..|+..+.. .+.+|.+|.+|-.
T Consensus 2 igI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4555 78889999999999999986 5678999988855
No 319
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.82 E-value=0.002 Score=50.71 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=32.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+-+.++ |..|+|||.++..+|..+.++|++|+++.++
T Consensus 184 ~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 445555 6779999999999999999999999999885
No 320
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.82 E-value=0.0082 Score=52.37 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+++-+.++|+|+..+. .....+. .+|.+++|+++...-...+..+++...+.+.+.+ +++||.|..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~-----~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~i-v~iNK~D~~ 152 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMR-----AVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV-LFINKVDRL 152 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHH-----hcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeE-EEEECchhh
Confidence 3667899999976543 2222333 3999999999877666667777777666777765 899999864
No 321
>PRK05642 DNA replication initiation factor; Validated
Probab=96.81 E-value=0.002 Score=48.24 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=32.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
-.+..|..|+|||.++..++.++.++|++|++++++.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 3456688899999999999999998999999999874
No 322
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.81 E-value=0.011 Score=50.11 Aligned_cols=139 Identities=15% Similarity=0.212 Sum_probs=69.9
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
=+.+++|.-|+||||+..++...+.+.+++++-++--.-. . .+++.-+...
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~-~--------------------------~~~~~q~~v~-- 367 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI-N--------------------------LPGINQVNVN-- 367 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee-c--------------------------CCCceEEEec--
Confidence 3556668889999999888777765545555443322110 0 0111111100
Q ss_pred cccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHH
Q psy9977 88 LKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEIT 167 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~ 167 (192)
.. .+..+...++.+++ .+.|+|+|.=-...+... ..+.+. ...+.++-+--.......+.|+.+
T Consensus 368 -~~-------~g~~~~~~l~~~LR----~dPDvI~vGEiRd~eta~-~a~~aa---~tGHlv~tTlHa~~a~~~i~Rl~~ 431 (564)
T TIGR02538 368 -PK-------IGLTFAAALRSFLR----QDPDIIMVGEIRDLETAE-IAIKAA---QTGHLVLSTLHTNDAPETLARLVN 431 (564)
T ss_pred -cc-------cCCCHHHHHHHHhc----cCCCEEEeCCCCCHHHHH-HHHHHH---HcCCcEEEEeccCCHHHHHHHHHH
Confidence 00 11234556666665 799999986432222111 123332 244555655555666666666665
Q ss_pred Hh-H--hcCCceeeEEecc--CccCCCCCC
Q psy9977 168 FC-K--KTNIKILGLIENM--SGYTCPHCK 192 (192)
Q Consensus 168 ~l-~--~~~~~~~g~v~N~--~~~~~~~~~ 192 (192)
.- . ...- .+..|+++ +...||+|+
T Consensus 432 lg~~~~~la~-~l~~vi~QrLvr~lC~~C~ 460 (564)
T TIGR02538 432 MGIAPFNIAS-SVNLIMAQRLARRLCSHCK 460 (564)
T ss_pred cCCCHHHHHH-HHHHhheeeehhhcccccC
Confidence 31 1 0000 12235555 455788884
No 323
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.81 E-value=0.0038 Score=48.81 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=31.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~~ 46 (192)
..|.-+.+..|+|||+++..+|...+. .|.+|++||..-.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 355656689999999999999876542 3579999999854
No 324
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.80 E-value=0.0025 Score=47.16 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=33.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.+.++ |..|+|||+++..++..+.+.|.++++++++..
T Consensus 38 ~~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 38 DRFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3445555 778999999999999999888999999998754
No 325
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.80 E-value=0.063 Score=36.93 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCCCcEEEE--eCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHhcCCceeeEEe
Q psy9977 105 MIRQIINDVCWKDVDYLII--DTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCKKTNIKILGLIE 181 (192)
Q Consensus 105 ~l~~~l~~l~~~~~D~Iii--D~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~g~v~ 181 (192)
....++... .+-|+|++ |...............+ ....+=+|+..+.. +-....+..+.|+..|.+.+ +.+
T Consensus 53 ~y~aLi~ta--~dad~V~ll~dat~~~~~~pP~fa~~f---~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~v 126 (143)
T PF10662_consen 53 FYHALIVTA--QDADVVLLLQDATEPRSVFPPGFASMF---NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEV 126 (143)
T ss_pred HHHHHHHHH--hhCCEEEEEecCCCCCccCCchhhccc---CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEE
Confidence 345555443 36676554 44432222222233333 25566667777766 67788888899999998866 555
Q ss_pred ccC
Q psy9977 182 NMS 184 (192)
Q Consensus 182 N~~ 184 (192)
+-.
T Consensus 127 S~~ 129 (143)
T PF10662_consen 127 SAV 129 (143)
T ss_pred ECC
Confidence 443
No 326
>PRK05595 replicative DNA helicase; Provisional
Probab=96.79 E-value=0.0026 Score=52.18 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=35.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~~ 47 (192)
.-+.++++..|+|||+++.++|..++ ++|++|+++.++...
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~ 242 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSK 242 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCH
Confidence 35678889999999999999999887 579999999998654
No 327
>PLN02327 CTP synthase
Probab=96.78 E-value=0.029 Score=46.88 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=35.0
Q ss_pred EEEEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|-|.|+++ -+|.||-.+|+.++..|..+|++|..+-+||.
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY 42 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPY 42 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccc
Confidence 66666655 57999999999999999999999999999865
No 328
>PRK08727 hypothetical protein; Validated
Probab=96.78 E-value=0.0023 Score=47.92 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=31.7
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.++.|..|+|||.++..++..+.++|++|.++.++-
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 455588999999999999999999999999998764
No 329
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.77 E-value=0.051 Score=43.09 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=29.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPS 49 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~ 49 (192)
++ .+++|==|+||||+--.+... ..|+|+.+|-.|...-+
T Consensus 5 pv-~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ 44 (341)
T TIGR02475 5 PV-TIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLG 44 (341)
T ss_pred CE-EEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCcccc
Confidence 44 444455679999999988764 47899999988866433
No 330
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=96.77 E-value=0.083 Score=37.37 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHh-Hh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFC-KK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l-~~---~~~~~~g~v~N~~~~ 186 (192)
...+.++|+|+......... ..+ ..+|.+++|++.... +.....+.+..+ +. .+.++ -++.||.|.
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~-~~~--~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~-viv~NK~Dl 128 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWN-TYY--TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVL-LVLANKQDL 128 (174)
T ss_pred CeEEEEEECCCCHHHHHHHH-HHh--hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCE-EEEEECCCC
Confidence 45788899987543222111 111 148988888887532 344444433333 22 23454 489999885
No 331
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.76 E-value=0.044 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.7
Q ss_pred EEEEEeCCCCccHhHHHHHHH
Q psy9977 8 VILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA 28 (192)
-|+++ +..++||||+.-.|.
T Consensus 161 dValV-G~PNaGKSTLln~Lt 180 (390)
T PRK12298 161 DVGLL-GLPNAGKSTFIRAVS 180 (390)
T ss_pred cEEEE-cCCCCCHHHHHHHHh
Confidence 46777 888999999998885
No 332
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.76 E-value=0.0031 Score=45.46 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=29.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
.|+|. |--|+||||++..|+.+|...|++|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45555 778899999999999999999999976654
No 333
>PRK08506 replicative DNA helicase; Provisional
Probab=96.75 E-value=0.0029 Score=52.28 Aligned_cols=41 Identities=15% Similarity=0.369 Sum_probs=36.7
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
-+.++++..|+|||+++.++|..+++.|++|+++.++....
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ 233 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAE 233 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHH
Confidence 56788899999999999999999999999999999887643
No 334
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.75 E-value=0.0033 Score=51.57 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=34.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.++++..|+||||++..+|..++++|.+|++++.+..
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES 119 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 456666899999999999999999999999999998744
No 335
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.75 E-value=0.0039 Score=46.34 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=32.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..+.+ .+..|+||||++.+++...+++|.+|+++..+..
T Consensus 21 ~~~~i-~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 21 FFVAV-TGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred eEEEE-ECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 34444 4788999999999999988889999999998754
No 336
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.75 E-value=0.039 Score=38.25 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=39.7
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+........ -.. ...+|.++++.+.. ..+.+.+...++.+.+ .+.+++ +|.||.|.
T Consensus 48 ~~~~~l~D~~g~~~~~~~~-~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~-iv~nK~D~ 118 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLT-SSY--YRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM-LVGNKIDK 118 (161)
T ss_pred EEEEEEEECCCchhhhhhh-HHH--hCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE-EEEECCcc
Confidence 5678899998743322111 111 12589888888876 3456666665555543 345444 88899885
No 337
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.75 E-value=0.0043 Score=46.03 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=33.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++.+ .+..|+|||+++..++...+++|.+|++++++..
T Consensus 17 ~~~li-~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 17 HVIVV-IGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 44555 5679999999999999999899999999999865
No 338
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.75 E-value=0.003 Score=50.50 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.1
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.++++..|+||||++..+|..+++.|.+|++++.+..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 455666899999999999999999999999999998743
No 339
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.73 E-value=0.0029 Score=51.99 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=34.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.++++..|+||||++..+|..+++.|.+|++++.+..
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 455677999999999999999999999999999998744
No 340
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.73 E-value=0.011 Score=52.47 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=49.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.|-+=+||+|+-.+... .....+ +.+|.+++|+++...-...+.++++.+...+++.+ +++||.|..
T Consensus 97 ~~~inliDtPGh~dF~~-e~~~al--~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i-~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSS-EVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHH-HHHHHH--hhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEE-EEEECCccc
Confidence 45557899997544322 222222 14999999999887767778888998888888876 999999864
No 341
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0091 Score=45.76 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=32.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+++=|+ +-.|+||||+|..++......|.++.+||..-
T Consensus 61 ~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 61 RITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred eEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 445566 66789999999999999999999999999984
No 342
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.71 E-value=0.0085 Score=43.84 Aligned_cols=147 Identities=18% Similarity=0.303 Sum_probs=84.9
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeeccc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGFL 87 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 87 (192)
.+..+=+.-|+|||.++..+++-+-++|++|.++-..... ..+..+-+. ...+..+.+. ...+.+++....
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~---refi~qm~s----l~ydv~~~~l--~G~l~~~~~~~~ 99 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV---REFIKQMES----LSYDVSDFLL--SGRLLFFPVNLE 99 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH---HHHHHHHHh----cCCCchHHHh--cceeEEEEeccc
Confidence 3445557788999999999999999999999999876442 111111000 0111122221 345566654322
Q ss_pred cccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-----HHHHHHhhh--hcCCeEEEecCCCcccHH
Q psy9977 88 LKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH-----ITVMECLRE--VQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~-----~~~l~~~~~--~~ad~viiv~~~~~~~~~ 160 (192)
+ ..|........|+.+++..+..+.|+||||.=....... ...+..+.. ..--.+++.+.|...+-+
T Consensus 100 ~------~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~ 173 (235)
T COG2874 100 P------VNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDED 173 (235)
T ss_pred c------cccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHH
Confidence 2 222333456778888887775688999999865332111 112222111 122357778888777766
Q ss_pred HHHHHHHHh
Q psy9977 161 DVRKEITFC 169 (192)
Q Consensus 161 ~~~~~~~~l 169 (192)
.+-++....
T Consensus 174 ~~~rirs~~ 182 (235)
T COG2874 174 VLTRIRSAC 182 (235)
T ss_pred HHHHHHHhh
Confidence 666665543
No 343
>PRK05380 pyrG CTP synthetase; Validated
Probab=96.71 E-value=0.033 Score=46.36 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=92.3
Q ss_pred cEEEEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-C---------ccccCCCCcccccC
Q psy9977 6 KHVILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-D---------VHQCPEGWVPVYTD 74 (192)
Q Consensus 6 ~~~i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~ 74 (192)
+|-|.|+++ -+|.||-.+|+.++..|..+|++|..+-+||.-.-=+--+..-.. + ....+.-.+-....
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 577777765 579999999999999999999999999998653210000111000 0 00000001111111
Q ss_pred CCCceEEEeeccccccC----CcccccC-----CchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH----HHHHHHhh
Q psy9977 75 ASQTLAVMSIGFLLKNR----DDAIIWR-----GPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH----ITVMECLR 141 (192)
Q Consensus 75 ~~~~l~~~~~~~~~~~~----~~~~~~~-----~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~----~~~l~~~~ 141 (192)
....-.-++.|..+..- +....+. -|+.+..+++.+.... ..+|++|++.++..++-. ..++..+.
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~-~~~dv~i~EiGGTvGDiEs~pf~ea~rq~~ 160 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG-TDADVVIVEIGGTVGDIESLPFLEAIRQLR 160 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC-CCCCEEEEEeCCccccccccHHHHHHHHHH
Confidence 11111222222222110 0000000 1344667777777776 789999999999876633 33333332
Q ss_pred h--hcCCe-----EEEec--CCCcccHHHHHHHHHHhHhcCCceeeEEecc
Q psy9977 142 E--VQCDG-----AVLVT--TPQAVSIEDVRKEITFCKKTNIKILGLIENM 183 (192)
Q Consensus 142 ~--~~ad~-----viiv~--~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~ 183 (192)
. ..-+. .++|. ..+...-.-++..++.|+..|+... +|+=|
T Consensus 161 ~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd-~i~~R 210 (533)
T PRK05380 161 LELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPD-ILVCR 210 (533)
T ss_pred HhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCC-EEEEe
Confidence 1 11112 22222 2344455567788888888888766 44333
No 344
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=96.71 E-value=0.012 Score=48.12 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc---cHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV---SIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~---~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.+.|+|+|+.- .........+ ..+|.+++|++.... ........+...+..+.+.+-+++||.|..
T Consensus 83 ~~~~i~iiDtpGh~-~f~~~~~~~~--~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 83 DKYEVTIVDCPGHR-DFIKNMITGA--SQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSV 154 (426)
T ss_pred CCeEEEEEECCCHH-HHHHHHHhhh--hhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence 46788999999732 2111222211 259999999888755 222333333444455655555889999864
No 345
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.70 E-value=0.096 Score=37.47 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=39.4
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHh-Hh---cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFC-KK---TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l-~~---~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+....... ....+ ..+|.+|+|.+.. ..++......+..+ +. ...+++ ++.|+.|.
T Consensus 59 ~~~~~~l~D~~G~~~~~~~-~~~~~--~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl 130 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPL-WRHYY--QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLL-VFANKQDL 130 (182)
T ss_pred CCEEEEEEECCCCHhHHHH-HHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEE-EEEeCCCC
Confidence 3577899999865332221 11111 2589888888875 44566555544433 22 234444 89999985
No 346
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.70 E-value=0.043 Score=48.15 Aligned_cols=68 Identities=15% Similarity=0.032 Sum_probs=41.9
Q ss_pred CCCcEEEEeCCCCCChhH-------HH--HHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH-------IT--VMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~-------~~--~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.++++.++|+|+..+... .. ....+...++|.+++|+++.. .+....+..++.+.+.|.+ +++||.|.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~--ler~l~l~~ql~e~giPvI-vVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCI-VALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCc--chhhHHHHHHHHHcCCCEE-EEEEchhh
Confidence 466788889987543210 00 111122235899998888764 3333445566777788766 99999885
No 347
>KOG4238|consensus
Probab=96.69 E-value=0.00089 Score=52.45 Aligned_cols=80 Identities=21% Similarity=0.135 Sum_probs=59.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccc-cCCCCceEEEeecc
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVY-TDASQTLAVMSIGF 86 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 86 (192)
.|.++ +-+|.||||++.+|-.+|...|.++.-+|.|..+.+++..+|..+....+......+.. .....++-++.+..
T Consensus 52 tvw~t-glsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcitsfi 130 (627)
T KOG4238|consen 52 TVWLT-GLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITSFI 130 (627)
T ss_pred eEEee-ccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeehhc
Confidence 34444 77889999999999999999999999999999999999999988876544433333321 22355666666544
Q ss_pred cc
Q psy9977 87 LL 88 (192)
Q Consensus 87 ~~ 88 (192)
.+
T Consensus 131 sp 132 (627)
T KOG4238|consen 131 SP 132 (627)
T ss_pred Ch
Confidence 43
No 348
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.69 E-value=0.0029 Score=45.94 Aligned_cols=36 Identities=33% Similarity=0.348 Sum_probs=29.1
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
|++. |..|+||||++..|+..+ .+.++.++.+|...
T Consensus 2 igi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 4454 678999999999999988 56789999998543
No 349
>PRK06749 replicative DNA helicase; Provisional
Probab=96.68 E-value=0.0033 Score=51.29 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=36.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
-+.++++..|+|||+++.++|...+++|++|+++.++...
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 5677889999999999999999999999999999888764
No 350
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=96.67 E-value=0.11 Score=36.82 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=41.4
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhH-h---cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCK-K---TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~-~---~~~~~~g~v~N~~~~ 186 (192)
+.+.+.+.|+|+...... ....+ -..+|.+++|.+.. ..+++...+.+..+. . .+.+ +-+|.||.|.
T Consensus 55 ~~~~l~l~D~~G~~~~~~--~~~~~-~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl 126 (175)
T smart00177 55 KNISFTVWDVGGQDKIRP--LWRHY-YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDL 126 (175)
T ss_pred CCEEEEEEECCCChhhHH--HHHHH-hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCc
Confidence 356789999987544322 21111 12589999988875 445666666555542 2 2344 4599999985
No 351
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0019 Score=46.92 Aligned_cols=38 Identities=32% Similarity=0.477 Sum_probs=33.0
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.+++|-.|+||||.|-+||+.|.+.+++|..+..|...
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~ 41 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR 41 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh
Confidence 34558889999999999999999999999888887664
No 352
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.66 E-value=0.068 Score=37.71 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhH----hcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCK----KTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~----~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... ..-..+ ..+|.+++|.+.... +.......+..+- ..+.+++ +|.||.|.
T Consensus 57 ~~~l~l~D~~G~~~~~~-~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDVGGQKTLRP-YWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLL-ILANKQDL 127 (173)
T ss_pred CEEEEEEECCCCHHHHH-HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECccc
Confidence 45678888886532211 111111 148888888776543 4555444443331 2355555 88999885
No 353
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.66 E-value=0.051 Score=38.09 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=36.4
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-------cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-------TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~g~v~N~~~~ 186 (192)
.+.+.|.|+|+...... +....-..+|.++++.+.+ ..+.+.+.+.+..+.. .+.|++ +|.||.|.
T Consensus 53 ~~~l~i~D~~G~~~~~~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 126 (170)
T cd04116 53 FVTLQIWDTAGQERFRS---LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-VLGNKNDI 126 (170)
T ss_pred EEEEEEEeCCChHHHHH---hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE-EEEECccc
Confidence 45677888886432211 1111112578877776544 4556666655554432 234544 88898885
No 354
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.66 E-value=0.048 Score=47.59 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCCCCChh------HH-HHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDE------HI-TVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~------~~-~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
....+.++|+|+..... .. ..... ...+|.+++|++....-...-..+.+.+++.+.+++ +|+||.|.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~--~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIA--VSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHH--HHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 35678889998744210 00 11111 125999999999864323333456777777788776 89999985
No 355
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.66 E-value=0.0035 Score=46.57 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=32.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..++.|..|+|||+++..++..+.+.|+++.++++...
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 34555888999999999999999899999999998754
No 356
>PRK09183 transposase/IS protein; Provisional
Probab=96.65 E-value=0.0034 Score=47.75 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=30.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
..+.++ |..|+|||+++..++..+.++|++|+++++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 345555 677999999999999998899999999874
No 357
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.65 E-value=0.01 Score=50.73 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=44.0
Q ss_pred cEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 119 DYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 119 D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
-+-++|+|+-- ......+..+ ..+|.+++|++.+..-...+.+.+..++..+.+.+-+|+||.|..
T Consensus 52 ~i~~IDtPGhe-~fi~~m~~g~--~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 52 VLGFIDVPGHE-KFLSNMLAGV--GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EEEEEECCCHH-HHHHHHHHHh--hcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 46789998642 2222222222 248888888888776666777777777777777655899998853
No 358
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=96.64 E-value=0.049 Score=40.10 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=41.3
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhcC-----CceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKTN-----IKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-----~~~~g~v~N~~~~ 186 (192)
.+.+.|.|+++..... .....+ -..+|.+++|.+.. ..+.+.+...++.+.+.. -..+-+|.||.|.
T Consensus 49 ~~~~~i~Dt~G~~~~~--~l~~~~-~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 49 NVTLQVWDIGGQSIGG--KMLDKY-IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred EEEEEEEECCCcHHHH--HHHHHH-hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 4677889998642211 111111 22599999988876 447777777777666432 1234589999985
No 359
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=96.64 E-value=0.0038 Score=46.41 Aligned_cols=40 Identities=35% Similarity=0.342 Sum_probs=34.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~ 46 (192)
.+-++|+ +..|+|||+++..|...+. +.|.+++++|..-.
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 4677888 7778999999999999999 89999999998744
No 360
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.63 E-value=0.0086 Score=50.82 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=43.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
++.+.++|+|+.- ......+..+ ..+|.+++|++.+......+.+.+..++..+++..-+++||.|..
T Consensus 49 ~~~v~~iDtPGhe-~f~~~~~~g~--~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 49 DYRLGFIDVPGHE-KFISNAIAGG--GGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred CEEEEEEECCCHH-HHHHHHHhhh--ccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 3667888998632 2222222221 248888888888765555556666667777887445889988853
No 361
>PRK08118 topology modulation protein; Reviewed
Probab=96.63 E-value=0.0023 Score=45.32 Aligned_cols=25 Identities=44% Similarity=0.698 Sum_probs=20.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
|+.|.|+ |.+|+||||+|..|+..+
T Consensus 1 m~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 1 MKKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3567777 688999999998888665
No 362
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.62 E-value=0.11 Score=41.29 Aligned_cols=67 Identities=19% Similarity=0.116 Sum_probs=37.7
Q ss_pred CCcEEEEeCCCCCCh---h----HHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhHhc---CCceeeEEeccCc
Q psy9977 117 DVDYLIIDTPPGTSD---E----HITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCKKT---NIKILGLIENMSG 185 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~---~----~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~ 185 (192)
...++++|+++.... . ....+.. ..+||.+++|++.+. .+......+.+.++.. +.+.+ +|+||.|
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~tle~--~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piI-lV~NK~D 312 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRATLEE--VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQL-LVYNKID 312 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHHHHHH--HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEE-EEEEeec
Confidence 456788888875321 1 1111111 125899999988753 3344443333444433 45554 9999998
Q ss_pred c
Q psy9977 186 Y 186 (192)
Q Consensus 186 ~ 186 (192)
.
T Consensus 313 l 313 (351)
T TIGR03156 313 L 313 (351)
T ss_pred C
Confidence 5
No 363
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.61 E-value=0.052 Score=38.34 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhcC---CceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKTN---IKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~g~v~N~~~~ 186 (192)
.+.+-|.|+|+.......... .-..+|.+++|.+.. ..+.....+.++.+.+.. -..+-+|.||.|.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~---~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIAST---YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHH---HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 456778888864332221111 112588888888874 456777777776653321 1234589999885
No 364
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.61 E-value=0.0037 Score=48.68 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=31.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+-+.++ |.-|+|||.++.++|..++++|++|.++.+.
T Consensus 157 ~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 345555 6789999999999999999999999999774
No 365
>PRK06893 DNA replication initiation factor; Validated
Probab=96.61 E-value=0.0037 Score=46.62 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=31.3
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+..|..|+|||.++..+|..+.++|.+|.+++++
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 44558889999999999999999999999999986
No 366
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.60 E-value=0.0056 Score=44.27 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=30.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
++.|+|. |--|+||||++..|+.+|...|++|.++..
T Consensus 3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4555555 777899999999999999999999977644
No 367
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.60 E-value=0.06 Score=39.37 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+-|.|+++.-.... .... --..+|.+++|.+.. ..+.+.+...++.+++. +.+++ +|.||.|.
T Consensus 48 ~v~l~iwDtaGqe~~~~--l~~~-y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~pii-lVgNK~DL 117 (202)
T cd04120 48 KIRLQIWDTAGQERFNS--ITSA-YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL-LVGNKLDC 117 (202)
T ss_pred EEEEEEEeCCCchhhHH--HHHH-HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECccc
Confidence 57788999986543222 1111 112589988887754 67888888777777643 45544 89999985
No 368
>PLN02924 thymidylate kinase
Probab=96.59 E-value=0.0053 Score=45.55 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=31.2
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
++++.|+|- |-.|+||||.+..|+.+|..+|++|.++.
T Consensus 14 ~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 14 SRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 445566665 77889999999999999999999986554
No 369
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=96.58 E-value=0.014 Score=41.50 Aligned_cols=35 Identities=37% Similarity=0.512 Sum_probs=25.5
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|-++.+ .|=||||.|..+|...+-.|+||+++=+=
T Consensus 6 i~vytG-~GKGKTTAAlGlalRA~G~G~rV~ivQFl 40 (172)
T PF02572_consen 6 IQVYTG-DGKGKTTAALGLALRAAGHGMRVLIVQFL 40 (172)
T ss_dssp EEEEES-SSS-HHHHHHHHHHHHHCTT--EEEEESS
T ss_pred EEEEeC-CCCCchHHHHHHHHHHHhCCCEEEEEEEe
Confidence 445533 46899999999999999999999998653
No 370
>PRK09354 recA recombinase A; Provisional
Probab=96.58 E-value=0.0049 Score=48.69 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=33.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+++-++ +..|+||||++..++...++.|.++++||+.-.
T Consensus 61 ~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s 99 (349)
T PRK09354 61 RIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 99 (349)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence 445555 679999999999999999999999999999854
No 371
>PRK08760 replicative DNA helicase; Provisional
Probab=96.56 E-value=0.0041 Score=51.44 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=35.6
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~ 48 (192)
-+.++++..|+|||+++.++|...+. .|++|+++.++....
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS 271 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHH
Confidence 56778899999999999999999985 699999999887643
No 372
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.56 E-value=0.0062 Score=50.87 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=33.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++.| .+..|+|||+++.+++...+++|.+|+++.++..
T Consensus 274 ~~~li-~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 274 SIILV-SGATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred cEEEE-EcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 34444 5789999999999999999999999999999854
No 373
>PRK08116 hypothetical protein; Validated
Probab=96.56 E-value=0.0046 Score=47.28 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=30.8
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.++.|..|+|||.++..+|..+.++|++|++++..
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45557889999999999999999999999999864
No 374
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.56 E-value=0.081 Score=38.39 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=42.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-------cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-------TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~g~v~N~~~~ 186 (192)
..+.+.+.|+|+....... ....-..+|.+++|.+.. ..+++.+...++.+.. .++|++ +|.||.|.
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~---~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pii-lv~NK~Dl 122 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGM---TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCL-LLANKCDL 122 (201)
T ss_pred CEEEEEEEECCCchhhhhh---HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEE-EEEECCCc
Confidence 4677889999875332221 111112589988888765 5677777766665542 345554 99999986
No 375
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.56 E-value=0.071 Score=38.52 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=44.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh--cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK--TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~--~~~~~~g~v~N~~~~ 186 (192)
.+.+-|.|+++...... .... --..+|.+++|.+.. ..+.+.+.+.++.+.+ .+.+++ +|.||.|.
T Consensus 54 ~~~l~iwDt~G~~~~~~--l~~~-~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~pii-lVGNK~DL 122 (189)
T cd04121 54 RVKLQLWDTSGQGRFCT--IFRS-YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKI-LVGNRLHL 122 (189)
T ss_pred EEEEEEEeCCCcHHHHH--HHHH-HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECccc
Confidence 56778889886543322 1111 112589988888875 7788888888888764 355555 89999986
No 376
>PRK08006 replicative DNA helicase; Provisional
Probab=96.55 E-value=0.005 Score=50.87 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGP 48 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~ 48 (192)
.-+.++++..|+|||+++.++|..++. +|++|+++.++....
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ 266 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGE 266 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 356778899999999999999999985 799999999886643
No 377
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.54 E-value=0.068 Score=37.13 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+.......... . -..+|.++++.+.. ..+.+.+....+.+.+ .+.|++ +|.||.|.
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~-~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-~v~nK~Dl 117 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQ-Y--MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV-LVGNKCDL 117 (164)
T ss_pred EEEEEEEECCCcccchHHHHH-H--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 456778888864433221111 1 11478877777765 4566666665555432 245554 88899884
No 378
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.54 E-value=0.00079 Score=49.02 Aligned_cols=32 Identities=31% Similarity=0.223 Sum_probs=22.9
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
|+++ |.-|+||||++..|+ +.|.. ++|+|.-.
T Consensus 2 i~it-G~~gsGKst~~~~l~----~~g~~--~i~~D~i~ 33 (196)
T PRK14732 2 IGIT-GMIGGGKSTALKILE----ELGAF--GISADRLA 33 (196)
T ss_pred EEEE-CCCCccHHHHHHHHH----HCCCE--EEecchHH
Confidence 5556 777899999998765 34644 58888654
No 379
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.52 E-value=0.053 Score=37.93 Aligned_cols=66 Identities=18% Similarity=0.099 Sum_probs=34.8
Q ss_pred CcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-------cCCceeeEEeccCccC
Q psy9977 118 VDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-------TNIKILGLIENMSGYT 187 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~g~v~N~~~~~ 187 (192)
+-+.++|+|+........ ...+ ..+|.++++.+.. ..+.+....+.+.+.. .+.+++ +|.||.|..
T Consensus 49 ~~~~~~D~~g~~~~~~~~-~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQSLG-VAFY--RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV-VLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHHhHH-HHHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE-EEEECcccc
Confidence 345678887643222111 1111 2488888887664 3344555444433321 145554 888998863
No 380
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.50 E-value=0.0061 Score=49.24 Aligned_cols=40 Identities=28% Similarity=0.337 Sum_probs=32.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.|.-++|..|+||||++..|...+...|.++..|..|-.
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 4455555888899999999999888878899999977744
No 381
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.50 E-value=0.016 Score=45.29 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=33.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+++-++++ .++||||++..+...+.+.|..+++||....
T Consensus 53 G~ivEi~G~-~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYGP-ESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred CceEEEeCC-CCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 567888876 4789999999999999889999999999744
No 382
>PRK08181 transposase; Validated
Probab=96.50 E-value=0.0039 Score=47.62 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=30.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
-+.++ |..|+|||.++..+|..+.++|++|+++.+.
T Consensus 108 nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 108 NLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred eEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 34444 7788999999999999999999999999863
No 383
>PRK06921 hypothetical protein; Provisional
Probab=96.49 E-value=0.005 Score=47.03 Aligned_cols=37 Identities=35% Similarity=0.422 Sum_probs=31.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDI 43 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~ 43 (192)
.+-+.|+ |..|+|||.++.++|..+.++ |++|+++..
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3445555 677999999999999999987 999999886
No 384
>PRK08840 replicative DNA helicase; Provisional
Probab=96.48 E-value=0.0059 Score=50.34 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=35.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~ 47 (192)
.-+.++++..|+|||+++.++|..++. +|++|+++.++...
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 356778899999999999999999985 79999999988664
No 385
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=96.47 E-value=0.06 Score=44.77 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHH
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA 28 (192)
..|+++ +..++||||+...|.
T Consensus 160 adV~LV-G~PNAGKSTLln~Ls 180 (500)
T PRK12296 160 ADVGLV-GFPSAGKSSLISALS 180 (500)
T ss_pred ceEEEE-EcCCCCHHHHHHHHh
Confidence 346666 788999999998885
No 386
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.47 E-value=0.0061 Score=49.88 Aligned_cols=41 Identities=15% Similarity=0.360 Sum_probs=35.9
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~ 48 (192)
-+.++++..|+|||+++.++|..++. .|++|+++.++....
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~ 237 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 237 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHH
Confidence 46778899999999999999999986 699999999986643
No 387
>PRK10436 hypothetical protein; Provisional
Probab=96.47 E-value=0.082 Score=43.64 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=24.2
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
+.+++|.-|+||||+..++-..+.+.+++++-|+
T Consensus 220 liLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiE 253 (462)
T PRK10436 220 LILVTGPTGSGKTVTLYSALQTLNTAQINICSVE 253 (462)
T ss_pred eEEEECCCCCChHHHHHHHHHhhCCCCCEEEEec
Confidence 4445566689999998887777766666766554
No 388
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.47 E-value=0.059 Score=45.87 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=42.4
Q ss_pred cEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 119 DYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 119 D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.++|+|+.-.... .... ....+|.+++|++.+..-.......+..++..+.+++ +++||.|.
T Consensus 72 ~i~~iDTPG~e~f~~--~~~~-~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiI-vviNK~D~ 135 (586)
T PRK04004 72 GLLFIDTPGHEAFTN--LRKR-GGALADIAILVVDINEGFQPQTIEAINILKRRKTPFV-VAANKIDR 135 (586)
T ss_pred CEEEEECCChHHHHH--HHHH-hHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCC
Confidence 478999997543222 1111 1124999999998875444555556666777788865 99999996
No 389
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.46 E-value=0.077 Score=36.79 Aligned_cols=67 Identities=19% Similarity=0.100 Sum_probs=41.4
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc--------CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT--------NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~--------~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... . ....-..+|.++++.+.. ..+.+.+...+..+.+. +.++ -+|.||.|.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~--~-~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLE--V-RNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVV-VVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHH--H-HHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceE-EEEEEchhc
Confidence 467888999987532221 1 111123589999998876 44566666666665432 3444 489999885
No 390
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.45 E-value=0.0049 Score=47.16 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=27.3
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+++|-.|+||||+|..|+..+.+.+++|.+++-|
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 345569999999999999999999999999999955
No 391
>PRK06761 hypothetical protein; Provisional
Probab=96.45 E-value=0.0052 Score=47.20 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=30.1
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEE-EeeCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI-LDIDL 45 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vll-iD~d~ 45 (192)
.+.++.+-.|+||||++..++..+...|.++-. .+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 345555778899999999999999888988875 45554
No 392
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.44 E-value=0.0054 Score=45.94 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=32.1
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++.|..|+|||+++..++..+.++|++|.++.++..
T Consensus 48 l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 48 IYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 4455778899999999999999999999999999853
No 393
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.44 E-value=0.079 Score=38.05 Aligned_cols=65 Identities=18% Similarity=0.100 Sum_probs=35.5
Q ss_pred CcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 118 VDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
+.+-++|+++....... .......+|.+++|.+.. ..+.+.+..+++.+... +.+++ +|.|+.|.
T Consensus 50 ~~l~i~D~~G~~~~~~~---~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAM---SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIY-LCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhh---hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEE-EEEEcccc
Confidence 34556777754322111 111112478877777664 44555555566665543 45544 88888874
No 394
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.42 E-value=0.0062 Score=41.15 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=32.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.+. +.|..|+|||+++..++..+.+.+.++..+++....
T Consensus 20 ~~v~-i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 20 KNLL-LYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CeEE-EECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 3444 458889999999999999999888999999887543
No 395
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.42 E-value=0.077 Score=37.05 Aligned_cols=66 Identities=21% Similarity=0.109 Sum_probs=37.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.+.|+++....... .... -..+|.++++.+.. ..+.+.+...++.+.+. ..+ +-+|.||.|.
T Consensus 49 ~~~~~l~Dt~g~~~~~~~-~~~~--~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl 118 (165)
T cd01865 49 RVKLQIWDTAGQERYRTI-TTAY--YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDM 118 (165)
T ss_pred EEEEEEEECCChHHHHHH-HHHH--ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECccc
Confidence 356778888754322111 1111 12578777776654 45666666666666542 333 4488898875
No 396
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.42 E-value=0.075 Score=37.60 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=41.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
..+.+-|+|+|+...... . ....-..+|.+++|.+.. ..+...+...+..+... +.++ -+|.||.|.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~--~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-iiv~nK~Dl 132 (180)
T cd04127 61 QRIHLQLWDTAGQERFRS--L-TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDI-VLCGNKADL 132 (180)
T ss_pred CEEEEEEEeCCChHHHHH--H-HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEeCccc
Confidence 356788999986432211 1 111123589888888875 55677777666666542 4444 489999885
No 397
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.41 E-value=0.0061 Score=52.28 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV 50 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~ 50 (192)
..+.++.|..|+||||+|..|+..|..+|..+.++|.|..+..+
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l 503 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL 503 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc
Confidence 45555668899999999999999999889999999999776544
No 398
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=96.40 E-value=0.029 Score=43.87 Aligned_cols=41 Identities=37% Similarity=0.527 Sum_probs=34.2
Q ss_pred EEEEEEe-CCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 7 HVILVLS-GKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s-~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
++|.|-+ .-||+|||-++..||..|.++|.++.++.=.+.+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 4455444 4699999999999999999999999999887665
No 399
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.40 E-value=0.012 Score=41.81 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=25.4
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.++.+..|+|||+.|..++.. .|.+++++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc
Confidence 355688899999999999765 67799998554
No 400
>KOG2743|consensus
Probab=96.40 E-value=0.089 Score=40.65 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=23.3
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++.+==|+||||+.-.+.. .+.|+|+.+|--.+.
T Consensus 61 IITGyLGaGKtTLLn~Il~--~~hgKRIAVIlNEfG 94 (391)
T KOG2743|consen 61 IITGYLGAGKTTLLNYILT--GQHGKRIAVILNEFG 94 (391)
T ss_pred EEEecccCChHHHHHHHHc--cCCCceEEEEhhhcc
Confidence 3334458999999765532 258999999965544
No 401
>PLN02796 D-glycerate 3-kinase
Probab=96.40 E-value=0.0074 Score=47.54 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=30.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.|.-++|..|+||||++..|+..+...|.++..|-.|-
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 344444478899999999999999988888888776663
No 402
>PRK05748 replicative DNA helicase; Provisional
Probab=96.40 E-value=0.0065 Score=49.96 Aligned_cols=41 Identities=15% Similarity=0.379 Sum_probs=35.7
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~ 48 (192)
-+.++++..|+|||+++.++|...+. .|++|+++.++....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~ 245 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE 245 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence 56777899999999999999999885 699999999887644
No 403
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.39 E-value=0.0043 Score=43.82 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=23.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.|.++ |..|+||||+|..||..+ |.. ++|.|
T Consensus 5 ~~i~l~-G~~GsGKstla~~La~~l---~~~--~~d~d 36 (175)
T PRK00131 5 PNIVLI-GFMGAGKSTIGRLLAKRL---GYD--FIDTD 36 (175)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 344444 888999999999999887 443 45666
No 404
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.39 E-value=0.0078 Score=44.87 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=31.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEE-EeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI-LDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vll-iD~d~~ 46 (192)
.+.+|++. |..|+||||++..|+..+...+..+.+ +.+|..
T Consensus 32 ~~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 32 RRTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 34455555 889999999999999999987766655 777643
No 405
>PRK06904 replicative DNA helicase; Validated
Probab=96.39 E-value=0.0065 Score=50.20 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=35.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCG 47 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~ 47 (192)
-+.++++..|+|||+++.++|...+. .|++|+++-++...
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 46778899999999999999999986 69999999888664
No 406
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.39 E-value=0.007 Score=51.16 Aligned_cols=43 Identities=30% Similarity=0.491 Sum_probs=35.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGP 48 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~ 48 (192)
.+.+|.+ .|-.|+||||++..||..|.. .|.++.++|.|.-+.
T Consensus 391 ~g~~Ivl-~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~ 434 (568)
T PRK05537 391 QGFTVFF-TGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK 434 (568)
T ss_pred CCeEEEE-ECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH
Confidence 3345545 588899999999999999997 899999999996643
No 407
>PLN03110 Rab GTPase; Provisional
Probab=96.37 E-value=0.082 Score=38.97 Aligned_cols=66 Identities=21% Similarity=0.195 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|.|+++...... .... .-..+|.+++|.+.. ..+.+.+...++.+++. +.+++ +|.||.|.
T Consensus 60 ~~~l~l~Dt~G~~~~~~--~~~~-~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-iv~nK~Dl 129 (216)
T PLN03110 60 TVKAQIWDTAGQERYRA--ITSA-YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM-MAGNKSDL 129 (216)
T ss_pred EEEEEEEECCCcHHHHH--HHHH-HhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEE-EEEEChhc
Confidence 45677888876433222 1111 112588888877765 55666666666666543 45444 88898874
No 408
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.37 E-value=0.067 Score=44.50 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.6
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
+.+++|.-|+||||+...+-..+...+++++.++
T Consensus 244 lilitGptGSGKTTtL~a~L~~l~~~~~~iiTiE 277 (486)
T TIGR02533 244 IILVTGPTGSGKTTTLYAALSRLNTPERNILTVE 277 (486)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEc
Confidence 4556688889999999887666655566665554
No 409
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.37 E-value=0.002 Score=52.07 Aligned_cols=34 Identities=41% Similarity=0.465 Sum_probs=25.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|++|+++ |.-|+||||++..|+ +.|..| +|+|.-
T Consensus 1 m~~Iglt-G~igsGKStv~~~L~----~~G~~v--idaD~i 34 (395)
T PRK03333 1 MLRIGLT-GGIGAGKSTVAARLA----ELGAVV--VDADVL 34 (395)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCeE--EehHHH
Confidence 3568888 666799999997775 457776 898854
No 410
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.37 E-value=0.01 Score=45.86 Aligned_cols=42 Identities=29% Similarity=0.222 Sum_probs=31.7
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC--CCeEEEEeeCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK--GFKVGILDIDLCG 47 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~--g~~vlliD~d~~~ 47 (192)
.+.+|+|. |..|+||||++..|+..+.+. +.+|.++..|...
T Consensus 61 ~p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 34455555 778899999999998888753 4579999888653
No 411
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.37 E-value=0.035 Score=44.93 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=54.2
Q ss_pred CCCcEEEEeCCCC--CChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPG--TSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~--~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++-+=|+|+|+- +++.....+.+ +|..++|+++...--.++.++.+.++..++|++ ..+||.|+.
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRtLtA-----vDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~-TFiNKlDR~ 146 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRTLTA-----VDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF-TFINKLDRE 146 (528)
T ss_pred CCeEEeccCCCCccccchhHHHHHHh-----hheeeEEEecccCccHHHHHHHHHHhhcCCceE-EEeeccccc
Confidence 3455678999974 44555567777 899999999999999999999999999999987 888999874
No 412
>PF12846 AAA_10: AAA-like domain
Probab=96.36 E-value=0.0061 Score=46.85 Aligned_cols=34 Identities=35% Similarity=0.477 Sum_probs=30.5
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++.|+.|+||||++.++...+...|.+++++|..
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4448889999999999999999999999999765
No 413
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.36 E-value=0.11 Score=36.28 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|.|+|+....... .... -..+|.+++|.+.. ..+.+.+...++.+... +.+ +-+|.||.|.
T Consensus 50 ~~~l~i~Dt~G~~~~~~~-~~~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl 119 (166)
T cd04122 50 KIKLQIWDTAGQERFRAV-TRSY--YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADL 119 (166)
T ss_pred EEEEEEEECCCcHHHHHH-HHHH--hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 567788998864322111 1111 12588888887775 45667777766665432 333 4488999875
No 414
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.35 E-value=0.0043 Score=45.19 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=31.1
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
+...+++.|++|..|+||||++..+...+. +....+||.|....
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHH
Confidence 346688889999999999999998877665 67888899997654
No 415
>PRK07933 thymidylate kinase; Validated
Probab=96.35 E-value=0.0085 Score=44.21 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=29.5
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++-|-.|+||||.+..|+.+|..+|++|.+....
T Consensus 4 viEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 4 AIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3447778999999999999999999999988754
No 416
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.34 E-value=0.087 Score=43.70 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=24.1
Q ss_pred cCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 144 QCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 144 ~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+|.+++|.+.....-..-.+.+..+...+.+++ +|+||.|.
T Consensus 293 ~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piI-iV~NK~Dl 334 (472)
T PRK03003 293 AAEVAVVLIDASEPISEQDQRVLSMVIEAGRALV-LAFNKWDL 334 (472)
T ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 4777777777654322222344555555566554 77777774
No 417
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.32 E-value=0.0075 Score=44.66 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=32.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCC------CeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKG------FKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g------~~vlliD~d~~ 46 (192)
.++.++ +..|+|||+++..+|...+..| .+|+++|.+..
T Consensus 20 ~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 20 RITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred cEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 445555 7889999999999999988777 89999999743
No 418
>PTZ00035 Rad51 protein; Provisional
Probab=96.32 E-value=0.011 Score=46.77 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=29.9
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~~ 46 (192)
.+..+.+..|+|||+++..++..... .+.+|++||....
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 44445579999999999999876552 4569999998743
No 419
>PRK11058 GTPase HflX; Provisional
Probab=96.31 E-value=0.094 Score=42.89 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=36.1
Q ss_pred cEEEEeCCCCCCh---h----HHHHHHHhhhhcCCeEEEecCCCccc-HHHH---HHHHHHhHhcCCceeeEEeccCcc
Q psy9977 119 DYLIIDTPPGTSD---E----HITVMECLREVQCDGAVLVTTPQAVS-IEDV---RKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 119 D~IiiD~~~~~~~---~----~~~~l~~~~~~~ad~viiv~~~~~~~-~~~~---~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.++++|+++.... . +...+.. ...+|.+++|++.+... .... .++++.+...+.+++ +|+||.|.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~--~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL 321 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQE--TRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDM 321 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHH--hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccC
Confidence 5677888775332 1 1111111 23589888888876432 2332 344444444456655 89999885
No 420
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.31 E-value=0.013 Score=46.31 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~~ 46 (192)
..|.-+.+..|+|||+++..+|...+. .+.+|++||..-.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 456666699999999999999876652 2369999999853
No 421
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.29 E-value=0.099 Score=35.98 Aligned_cols=67 Identities=27% Similarity=0.281 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... . ....-..+|.+++|.+.. ..+.+.+..+++.++.. +.+++ ++.||.|..
T Consensus 48 ~~~~~~~D~~g~~~~~~--~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHA--L-GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLV-IVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHH--h-hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccc
Confidence 34677788876332211 1 111112478888877654 34556666655555432 34444 888888853
No 422
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.28 E-value=0.1 Score=37.26 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=33.7
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhH----hcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCK----KTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~----~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... .....+ ..+|.+++|.+... .+.......+..+. ..+.|++ ++.||.|.
T Consensus 62 ~~~~~l~D~~G~~~~~~-~~~~~~--~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi-vv~NK~Dl 132 (190)
T cd00879 62 NIKFKTFDLGGHEQARR-LWKDYF--PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL-ILGNKIDL 132 (190)
T ss_pred CEEEEEEECCCCHHHHH-HHHHHh--ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE-EEEeCCCC
Confidence 35667788875432211 111111 14788887776643 23443443333332 2345554 78898885
No 423
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=96.28 E-value=0.11 Score=37.42 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=74.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee--cc
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI--GF 86 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 86 (192)
|.|+ +-.|=||||.|..+|....-.|+||+++=+=-.. ...| .......-..++..... +.
T Consensus 31 i~V~-TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~----~~~G------------E~~~~~~~~~~v~~~~~~~g~ 93 (198)
T COG2109 31 IIVF-TGNGKGKTTAALGLALRALGHGLRVGVVQFIKGG----WKYG------------EEAALEKFGLGVEFHGMGEGF 93 (198)
T ss_pred EEEE-ecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecC----cchh------------HHHHHHhhccceeEEecCCce
Confidence 4444 3456899999999999999999999998653111 0000 00000000111121111 11
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCC------CChhHHHHHHHhh-hhcCCeEEEecCCCcccH
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPG------TSDEHITVMECLR-EVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~------~~~~~~~~l~~~~-~~~ad~viiv~~~~~~~~ 159 (192)
......... ........+......++++.||+||+|==.. ++... ++..+. -++-..||+.-+.-+..+
T Consensus 94 tw~~~~~~~--d~~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~ee--V~~~l~~kP~~~~vIiTGr~ap~~l 169 (198)
T COG2109 94 TWETQDREA--DIAAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEE--VVALLKARPEHTHVIITGRGAPPEL 169 (198)
T ss_pred eCCCcCcHH--HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHH--HHHHHhcCCCCcEEEEECCCCCHHH
Confidence 111110000 0011223344444445557999999995431 22211 222222 133456777777778888
Q ss_pred HHHHHHHHHhHhcC
Q psy9977 160 EDVRKEITFCKKTN 173 (192)
Q Consensus 160 ~~~~~~~~~l~~~~ 173 (192)
-+...++..++...
T Consensus 170 ie~ADlVTEm~~vK 183 (198)
T COG2109 170 IELADLVTEMRLVK 183 (198)
T ss_pred HHHHHHHhhccccc
Confidence 88888888887543
No 424
>PRK06321 replicative DNA helicase; Provisional
Probab=96.23 E-value=0.0097 Score=49.17 Aligned_cols=41 Identities=17% Similarity=0.395 Sum_probs=35.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~ 48 (192)
-+.++++..|+|||+++.++|..++. .|++|+++.++....
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 46777899999999999999999985 799999998886643
No 425
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.21 E-value=0.13 Score=37.94 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh--cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK--TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~--~~~~~~g~v~N~~~~ 186 (192)
.+.+-|.|+++.-.... .... .-..+|.+++|.+.. ..+...+...++.+.+ .+.+++ +|.||.|.
T Consensus 61 ~~~l~i~Dt~G~~~~~~--~~~~-~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pii-lvgNK~Dl 129 (219)
T PLN03071 61 KIRFYCWDTAGQEKFGG--LRDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDV 129 (219)
T ss_pred EEEEEEEECCCchhhhh--hhHH-HcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEEchhh
Confidence 45777888876433211 1111 011477777776665 4566666666666543 245544 88888885
No 426
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=96.21 E-value=0.019 Score=42.60 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=61.3
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
...|.+.++-|-.+-|||++|..|+++|.-.|.++-++.+...+-.. .+. ..+
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~---~~~------------------------~~~ 61 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKL---SGA------------------------PQD 61 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH---HSS-------------------------S-
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecc---ccc------------------------ccc
Confidence 35678888889999999999999999999999999999875322110 000 000
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhh
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLR 141 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~ 141 (192)
+....+...+....+.......+++++..+.++.=++-|+|+...........+..+.
T Consensus 62 ~~ff~p~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~ 119 (222)
T PF01591_consen 62 AEFFDPDNEEAKKLREQIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFK 119 (222)
T ss_dssp GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHH
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 0111111112222222233456777777776456689999998877666655555543
No 427
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.20 E-value=0.054 Score=39.12 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=33.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
..|.|. +.-|+|||++...+.+.|.++ +++.+|..|...
T Consensus 14 ~~i~v~-Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 14 LRIGVG-GPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred EEEEec-CCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence 466666 666799999999999999988 999999999775
No 428
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.19 E-value=0.012 Score=43.35 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=29.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
.+|++. |-+|+||||+|..|+..|... ++.+|-.|...-
T Consensus 9 iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk 47 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYK 47 (218)
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeecccccc
Confidence 345555 777899999999999888754 788888775543
No 429
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.19 E-value=0.25 Score=35.90 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=25.8
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEee
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDI 43 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~ 43 (192)
.++++..|+||||+...++..+... +.+++.++-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 4556888999999999999888763 556666554
No 430
>PRK06547 hypothetical protein; Provisional
Probab=96.18 E-value=0.0057 Score=43.59 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=25.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.+|+|. |..|+||||++..|+..+ | +.++++|..
T Consensus 14 ~~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 14 GMITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 44455555 888999999999998763 3 345666643
No 431
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.16 E-value=0.007 Score=40.59 Aligned_cols=41 Identities=32% Similarity=0.348 Sum_probs=30.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhC-----CCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDK-----GFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~-----g~~vlliD~d~~~ 47 (192)
+.+.++.|..|+|||+++..++..+... ..+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 4456666888999999999999999864 6788888887553
No 432
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.16 E-value=0.019 Score=45.41 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=30.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~~ 46 (192)
..|..+.+..|+|||+++..+|...+. .+.+|++||.+-.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 356666689999999999999976542 2248999999854
No 433
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.16 E-value=0.11 Score=36.41 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=17.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
...|+++ |..|+||||+...+.
T Consensus 14 ~~~v~i~-G~~g~GKStLl~~l~ 35 (173)
T cd04155 14 EPRILIL-GLDNAGKTTILKQLA 35 (173)
T ss_pred ccEEEEE-ccCCCCHHHHHHHHh
Confidence 3457777 788899999987774
No 434
>PLN03118 Rab family protein; Provisional
Probab=96.14 E-value=0.092 Score=38.44 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHH-HHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEI-TFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~-~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+........ -..+ ..+|.+++|.+.. ..+...+..++ ..+.. .+.+++ +|.||.|.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~-~~~~--~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl 132 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLT-SSYY--RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKM-LVGNKVDR 132 (211)
T ss_pred EEEEEEEECCCchhhHHHH-HHHH--hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 4678889998754332211 1111 2588888887765 34555554432 22221 234444 78899885
No 435
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.13 E-value=0.0028 Score=45.75 Aligned_cols=32 Identities=44% Similarity=0.443 Sum_probs=22.2
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|+++ |.-|+||||++..|+... |.++ +|+|.-
T Consensus 2 i~it-G~~gsGKst~~~~l~~~~---~~~~--i~~D~~ 33 (188)
T TIGR00152 2 IGLT-GGIGSGKSTVANYLADKY---HFPV--IDADKI 33 (188)
T ss_pred EEEE-CCCCCCHHHHHHHHHHhc---CCeE--EeCCHH
Confidence 4555 777899999997665432 3665 788854
No 436
>PF05729 NACHT: NACHT domain
Probab=96.12 E-value=0.007 Score=42.16 Aligned_cols=27 Identities=41% Similarity=0.585 Sum_probs=23.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKG 35 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g 35 (192)
+.++.|..|+||||++..++..+.+.+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 456669999999999999999999866
No 437
>PRK07261 topology modulation protein; Provisional
Probab=96.11 E-value=0.0083 Score=42.67 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
.|+++ |.+|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 45666 788999999999987654
No 438
>PRK09165 replicative DNA helicase; Provisional
Probab=96.11 E-value=0.011 Score=49.19 Aligned_cols=43 Identities=21% Similarity=0.530 Sum_probs=35.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC---------------CCeEEEEeeCCCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK---------------GFKVGILDIDLCGPSV 50 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~---------------g~~vlliD~d~~~~~~ 50 (192)
-+.++++..|+|||+++.++|...++. |++|+++.+......+
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 567778999999999999999999863 7899999888765433
No 439
>PTZ00301 uridine kinase; Provisional
Probab=96.10 E-value=0.015 Score=42.86 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh-CC-CeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD-KG-FKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~-~g-~~vlliD~d~~ 46 (192)
.+|++. |-+|+||||+|..|+..+.+ .| ..|.++-.|..
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 456665 77789999999999988864 34 34667777644
No 440
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.10 E-value=0.021 Score=47.48 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=32.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~ 46 (192)
.+..+.+..|+||||++.+++..-+++ |.++++|.++..
T Consensus 22 ~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 22 RSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 344555888999999999999887765 999999999854
No 441
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.08 E-value=0.18 Score=35.07 Aligned_cols=66 Identities=21% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCC-CcccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTP-QAVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|.|+++.......... . ...+|.++++.+. +..+.+.+..+++.+... +.++ -+|.||.|.
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~-~--~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~i-ilvgnK~Dl 117 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQ-Y--YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQK-ILIGNKADE 117 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHH-H--hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECccc
Confidence 345677788754332211111 1 1257888887764 355777777766665533 3444 488888875
No 442
>PRK05636 replicative DNA helicase; Provisional
Probab=96.07 E-value=0.013 Score=48.83 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=35.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~ 47 (192)
.-+.++++..|+|||+++.++|...+. .|++|+++.++...
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 356677899999999999999999884 79999999888764
No 443
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.06 E-value=0.23 Score=34.24 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=15.4
Q ss_pred EEEEeCCCCccHhHHHHHHH
Q psy9977 9 ILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA 28 (192)
|+++ |..|+||||+...++
T Consensus 2 i~l~-G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFA-GRSNVGKSSLINALT 20 (170)
T ss_pred EEEE-cCCCCCHHHHHHHHh
Confidence 4555 777899999998886
No 444
>PRK14527 adenylate kinase; Provisional
Probab=96.04 E-value=0.0095 Score=43.06 Aligned_cols=31 Identities=35% Similarity=0.513 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
|+..++++|.++ |..|+||||+|..||..+.
T Consensus 1 ~~~~~~~~i~i~-G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 1 MTQTKNKVVIFL-GPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCCCcEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 566777777777 6689999999999987764
No 445
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.01 E-value=0.14 Score=44.83 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=25.4
Q ss_pred cCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 144 QCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 144 ~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+|.+++|++.....-..-.+++..+.+.+.+++ +|+||.|.
T Consensus 532 ~advvilViDat~~~s~~~~~i~~~~~~~~~piI-iV~NK~DL 573 (712)
T PRK09518 532 RSELALFLFDASQPISEQDLKVMSMAVDAGRALV-LVFNKWDL 573 (712)
T ss_pred cCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEEchhc
Confidence 4777777777654433333345555555566655 78888774
No 446
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=96.01 E-value=0.0082 Score=47.38 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=34.4
Q ss_pred EEEEEEe-CCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 7 HVILVLS-GKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 7 ~~i~~~s-~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
++|.|-+ +-||+|||-++..||..|.++|+++.++-=-+.+
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 4665555 4699999999999999999999999999876654
No 447
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.01 E-value=0.011 Score=47.14 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=32.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHH--HhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGL--KDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~l--a~~g~~vlliD~d 44 (192)
|.+.|+.|..|+|||.++.+++..+ .+.+.+++++-.+
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 4678888999999999999999999 7778888777665
No 448
>PRK07004 replicative DNA helicase; Provisional
Probab=96.00 E-value=0.013 Score=48.30 Aligned_cols=41 Identities=17% Similarity=0.454 Sum_probs=35.6
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~ 48 (192)
-+.++++..|+|||+++.++|..++. .|++|+++-++....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ 255 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGT 255 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHH
Confidence 46777899999999999999999885 799999998887653
No 449
>PRK06851 hypothetical protein; Provisional
Probab=95.99 E-value=0.025 Score=45.11 Aligned_cols=45 Identities=27% Similarity=0.424 Sum_probs=36.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV 50 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~ 50 (192)
.+.+.++.+..|+||||+...++..+.++|++|.+.=|-....++
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdsl 257 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSL 257 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence 345566668889999999999999999999999999887553333
No 450
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=95.94 E-value=0.0082 Score=44.76 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=25.6
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
|+|+ |+.||||+...||..+..+|++|++-
T Consensus 2 i~~v---G~gGKTtl~~~l~~~~~~~g~~v~~T 31 (232)
T TIGR03172 2 IAFV---GAGGKTSTMFWLAAEYRKEGYRVLVT 31 (232)
T ss_pred EEEE---cCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4455 45899999999999999999999764
No 451
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.91 E-value=0.015 Score=41.30 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=28.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..+.++.|..|+|||++...+...+.+.+.-++.++++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 3455555888999999999999999987545888888866
No 452
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.90 E-value=0.0091 Score=46.25 Aligned_cols=37 Identities=27% Similarity=0.198 Sum_probs=28.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|+.+.++.|-.|+||||+|..|+..+. +...+|.|..
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 345666679999999999999988763 4577787754
No 453
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.89 E-value=0.017 Score=41.98 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=27.7
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
+.++.+..|+||||+...++..+...|++|+++-.
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 45555778999999999999999999999988743
No 454
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.89 E-value=0.0084 Score=40.91 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=25.3
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.++.|..|+||||++..++..+. ..+++.|..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~ 33 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEI 33 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHH
Confidence 456678899999999988876554 566888853
No 455
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=95.87 E-value=0.26 Score=35.26 Aligned_cols=65 Identities=8% Similarity=0.089 Sum_probs=36.6
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+-|.|+++...... ... ..-..+|.+++|.+.. ..+.+.+.+.++.+.+. ..+ + +|.||.|.
T Consensus 48 ~~~l~iwDt~G~~~~~~--~~~-~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-i-lVgnK~Dl 116 (182)
T cd04128 48 EITFSIWDLGGQREFIN--MLP-LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-I-LVGTKYDL 116 (182)
T ss_pred EEEEEEEeCCCchhHHH--hhH-HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-E-EEEEchhc
Confidence 45677788775433221 111 1112578877777654 44666666666666542 233 3 67888875
No 456
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.86 E-value=0.029 Score=44.93 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=32.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.+|+|+ |..|+||||++..|...|.++ ++|.++.-+
T Consensus 4 ~~~~i~i~-G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 4 HPFEIAFC-GYSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred CCEEEEEE-eCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 34677777 557899999999999999999 999999753
No 457
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.86 E-value=0.0093 Score=41.20 Aligned_cols=33 Identities=42% Similarity=0.498 Sum_probs=25.3
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.++.|..|+||||+|..|+..+ | ..++|.|...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 4666899999999999998774 3 3567887654
No 458
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.85 E-value=0.021 Score=41.47 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=28.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
++.|+|. |-.|+||||++..|+..|...|+.+.+.
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 3555555 7788999999999999999888776654
No 459
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.84 E-value=0.021 Score=41.92 Aligned_cols=34 Identities=35% Similarity=0.475 Sum_probs=25.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
...+|+++ |.-|+||||++.-|+ +.|..| +|+|.
T Consensus 4 ~~~~igit-G~igsGKSt~~~~l~----~~g~~v--~d~D~ 37 (208)
T PRK14731 4 LPFLVGVT-GGIGSGKSTVCRFLA----EMGCEL--FEADR 37 (208)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHH----HCCCeE--EeccH
Confidence 34567776 777899999986665 457766 78873
No 460
>PRK13946 shikimate kinase; Provisional
Probab=95.81 E-value=0.013 Score=42.09 Aligned_cols=34 Identities=44% Similarity=0.642 Sum_probs=25.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.+.|.++ |-.|+||||++..||..| |.+ ++|.|.
T Consensus 10 ~~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 10 KRTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 3456666 778999999999999887 666 477773
No 461
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.81 E-value=0.016 Score=44.41 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHh-CC-CeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKD-KG-FKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g-~~vlliD~d~~ 46 (192)
+..++|+++ |-||+||||+|..+++.... .. ..+..+++...
T Consensus 17 ~~~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~ 60 (287)
T PF00931_consen 17 NEVRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN 60 (287)
T ss_dssp TSSEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-
T ss_pred CCeEEEEEE-cCCcCCcceeeeecccccccccccccccccccccc
Confidence 345666666 88999999999999988553 22 35677777644
No 462
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.81 E-value=0.06 Score=35.34 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCChhHH--------HHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEecc
Q psy9977 117 DVDYLIIDTPPGTSDEHI--------TVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENM 183 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~--------~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~ 183 (192)
...++++|+|+..+.... ..+..+ ..+|.+++|++.+...-+...++++.++ .+.+++ +|+||
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i-~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQI--SKSDLIIYVVDASNPITEDDKNILRELK-NKKPII-LVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--CTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEE-EEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--HHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEE-EEEcC
Confidence 556789999987653111 122222 4689999999977744456667778886 555554 89886
No 463
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.01 Score=44.46 Aligned_cols=28 Identities=39% Similarity=0.661 Sum_probs=24.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
+.+.|.++++-.|+||||+|..+|+.|.
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLg 114 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLG 114 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcC
Confidence 3468899999999999999999998765
No 464
>PRK04040 adenylate kinase; Provisional
Probab=95.79 E-value=0.019 Score=41.52 Aligned_cols=31 Identities=39% Similarity=0.577 Sum_probs=23.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeE
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~v 38 (192)
+++|+++ |..|+||||++..|+..+. .+.++
T Consensus 2 ~~~i~v~-G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVT-GVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 4566666 7888999999999999885 24444
No 465
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.78 E-value=0.01 Score=42.90 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=24.3
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++|..|+||||+|..|+..+. .+.+|..|-.
T Consensus 3 ~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf 34 (187)
T cd02024 3 GISGVTNSGKTTLAKLLQRILP----NCCVIHQDDF 34 (187)
T ss_pred EEECCCCCCHHHHHHHHHHHcC----CCeEEccccc
Confidence 3448889999999999998862 4667777743
No 466
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.026 Score=41.43 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=29.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
++.|+|= |--|+||||.+..|+.+|.++|.+|.+.-
T Consensus 3 g~fI~iE-GiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 3 GMFIVIE-GIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4556665 66789999999999999999999887653
No 467
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.78 E-value=0.019 Score=44.87 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~~ 46 (192)
..|..+.+..|+|||+++..+|...+. .+.+|++||.+-.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 345555689999999999999988763 2349999999853
No 468
>PRK13973 thymidylate kinase; Provisional
Probab=95.78 E-value=0.026 Score=41.57 Aligned_cols=36 Identities=33% Similarity=0.387 Sum_probs=30.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
++.|+|- |-.|+||||.+..|+.+|...|++|.+..
T Consensus 3 g~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 3 GRFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3566664 77789999999999999999999997663
No 469
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.78 E-value=0.019 Score=44.46 Aligned_cols=42 Identities=29% Similarity=0.544 Sum_probs=30.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~ 51 (192)
.+.+.+++|-.|+||||+|..||..| |.++ ++..|.-+..+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l---~~~~-vi~~D~~re~~R 132 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL---GIRS-VIGTDSIREVMR 132 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh---CCCE-EEechHHHHHHH
Confidence 34666777999999999999999888 4443 566776654333
No 470
>PRK13947 shikimate kinase; Provisional
Probab=95.77 E-value=0.018 Score=40.70 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=24.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.|.++ |-.|+||||++..||..| |++. +|.|.
T Consensus 2 ~~I~l~-G~~GsGKst~a~~La~~l---g~~~--id~d~ 34 (171)
T PRK13947 2 KNIVLI-GFMGTGKTTVGKRVATTL---SFGF--IDTDK 34 (171)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CCCE--EECch
Confidence 345555 778899999999998776 5565 77774
No 471
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.72 E-value=0.033 Score=38.93 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHH-HHHHhHhc--CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA-VSIEDVRK-EITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~-~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+........... -..+|.++++.+.+. .+...... ++..+... +.+++ +|.||.|.
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl 116 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLS---YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPII-LVGTKIDL 116 (171)
T ss_pred EEEEEEEEeCCCcccccccchhh---cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEEccHHh
Confidence 46778899998754322211111 124899999998864 44444433 34444432 35554 99999885
No 472
>PLN02348 phosphoribulokinase
Probab=95.71 E-value=0.027 Score=45.21 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=30.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCC---------------CeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKG---------------FKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g---------------~~vlliD~d~~ 46 (192)
+-+|+|. +-+|+||||++..|+..|...+ ..+.+|-+|-.
T Consensus 49 p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 49 TVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 3445554 8889999999999999997542 46788888844
No 473
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.69 E-value=0.035 Score=43.54 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=29.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh---CC---CeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD---KG---FKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~---~g---~~vlliD~d~~ 46 (192)
.|..+.+..|+|||+++..+|...+. .| .+|++||....
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 45555589999999999999874332 33 48999999854
No 474
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.074 Score=36.74 Aligned_cols=30 Identities=43% Similarity=0.494 Sum_probs=23.7
Q ss_pred CCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 14 GKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 14 ~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
+-.|+||||++..||..|. --+||.|--.|
T Consensus 2 GVsG~GKStvg~~lA~~lg-----~~fidGDdlHp 31 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG-----AKFIDGDDLHP 31 (161)
T ss_pred CCCccCHHHHHHHHHHHcC-----CceecccccCC
Confidence 4579999999999998876 34689986544
No 475
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.011 Score=41.37 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
+..+||+.|+||||+|..||.++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 345789999999999988887754
No 476
>PRK07429 phosphoribulokinase; Provisional
Probab=95.62 E-value=0.026 Score=44.43 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=25.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
-+|++. |..|+||||++..|+..+...+ +.++..|
T Consensus 9 ~IIgI~-G~SGSGKSTla~~L~~ll~~~~--~~vi~~D 43 (327)
T PRK07429 9 VLLGVA-GDSGCGKTTFLRGLADLLGEEL--VTVICTD 43 (327)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHhHhccCc--eEEEEec
Confidence 355555 8889999999999998876544 3445555
No 477
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.61 E-value=0.018 Score=40.76 Aligned_cols=34 Identities=35% Similarity=0.678 Sum_probs=25.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.|.++ |-.|+||||++..||..+ |++ ++|.|..
T Consensus 3 ~~i~~~-G~~GsGKst~~~~la~~l---g~~--~~d~D~~ 36 (171)
T PRK03731 3 QPLFLV-GARGCGKTTVGMALAQAL---GYR--FVDTDQW 36 (171)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEccHH
Confidence 456665 788999999999998776 554 4777743
No 478
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.60 E-value=0.47 Score=34.81 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=39.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+++....... .... -..+|.+++|.+.. ..+.+.+.+.++.+.+. ....+-+|.||.|.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~-~~~~--~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 51 RIKLQLWDTAGQERFRSI-TRSY--YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEEEEeCCcchhHHHH-HHHH--hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 457788998864332211 1111 12588888887775 55677777666665432 12234478899885
No 479
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.58 E-value=0.015 Score=42.34 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=27.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
+.+.+++|..|+||||+|..||..+ |..+ ++..|.-+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~~r~ 40 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDYLRE 40 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHHHHH
Confidence 4566777999999999999998874 5544 566664433
No 480
>KOG1423|consensus
Probab=95.58 E-value=0.099 Score=40.52 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=23.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
-.|+++ |-.++||||++-++- |.||..+.....
T Consensus 73 L~vavI-G~PNvGKStLtN~mi------g~kv~~vS~K~~ 105 (379)
T KOG1423|consen 73 LYVAVI-GAPNVGKSTLTNQMI------GQKVSAVSRKVH 105 (379)
T ss_pred EEEEEE-cCCCcchhhhhhHhh------CCcccccccccc
Confidence 356777 678999999997774 777755554443
No 481
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.56 E-value=0.019 Score=40.71 Aligned_cols=28 Identities=39% Similarity=0.638 Sum_probs=23.4
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeE
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKV 38 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~v 38 (192)
|..++-|+||||+...+...+.++|.+|
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 4458899999999999999998887766
No 482
>PRK12338 hypothetical protein; Provisional
Probab=95.53 E-value=0.015 Score=45.50 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=27.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
+.+.+++|.+|+||||+|..||..+ |.+. ++..|..+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l---~~~~-~~~tD~~r~ 41 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL---NIKH-LIETDFIRE 41 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC---CCeE-EccChHHHH
Confidence 4566777999999999999998876 4443 456665543
No 483
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.52 E-value=0.094 Score=36.45 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCCh-------hH---HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSD-------EH---ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~-------~~---~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..++.++|+|+.... .. ...+..+ ..+|.++++++...........++..+...+.+++ +++||.|.
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl 125 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI--ERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDL 125 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHH--hhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEecccc
Confidence 456889999874321 00 0111111 14889999888765444444556666665666665 89999875
No 484
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.51 E-value=0.1 Score=37.06 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=40.3
Q ss_pred CCCcEEEEeCCCCCChh-HHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHh-H---hcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDE-HITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFC-K---KTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~-~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l-~---~~~~~~~g~v~N~~~~ 186 (192)
.++.+.+.|.++..... .+..... .+|.+|.|++... ..+.++...+..+ . ..+.|+. +++||.|.
T Consensus 56 ~~~~~~~~d~gG~~~~~~~w~~y~~----~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piL-Il~NK~D~ 127 (175)
T PF00025_consen 56 KGYSLTIWDLGGQESFRPLWKSYFQ----NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPIL-ILANKQDL 127 (175)
T ss_dssp TTEEEEEEEESSSGGGGGGGGGGHT----TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEE-EEEESTTS
T ss_pred CcEEEEEEeccccccccccceeecc----ccceeEEEEecccceeecccccchhhhcchhhcccceEE-EEeccccc
Confidence 46778889987653321 1112111 4898888888764 4566666555544 2 2345554 99999885
No 485
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.50 E-value=0.015 Score=38.66 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=18.6
Q ss_pred EEeCCCCccHhHHHHHHHHHH
Q psy9977 11 VLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~l 31 (192)
+++|..|+||||++..|+..+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 456888999999999999997
No 486
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.48 E-value=0.018 Score=41.17 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
.++|++.|+ .|+||||++..||..+
T Consensus 3 ~~ii~i~G~-~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG-PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence 467777744 8999999999999775
No 487
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.47 E-value=0.04 Score=39.23 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=33.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~~~ 48 (192)
...++.+-.|+|||.+|..||..+. ....+.+.+|+.....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 3444447778999999999999999 6888999999986643
No 488
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.45 E-value=0.027 Score=44.18 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=31.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhC------CCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDK------GFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~------g~~vlliD~d~~ 46 (192)
..+..+.+..|+|||+++..+|...+.. +.+|++||++-.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 3455566899999999999999887642 359999999853
No 489
>PRK09866 hypothetical protein; Provisional
Probab=95.44 E-value=0.074 Score=45.43 Aligned_cols=68 Identities=9% Similarity=0.024 Sum_probs=44.3
Q ss_pred CCcEEEEeCCCCCCh--h--HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCC--ceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSD--E--HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNI--KILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~--~--~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~--~~~g~v~N~~~~~ 187 (192)
...+|++|+|+.... . .......+ .++|.+++|+++...--..-..+.+.+++.+. +++ +|+||+|..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL--~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVI-LVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQL--ARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLY-VLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHH--hhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEE-EEEEcccCC
Confidence 577899999987542 1 11122222 25999999999875322333456677776663 544 999999964
No 490
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=95.43 E-value=0.3 Score=35.32 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=16.3
Q ss_pred EEEEEeCCCCccHhHHHHHHH
Q psy9977 8 VILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA 28 (192)
.|+++ |+.|+||||+.-.+.
T Consensus 2 ~i~lv-G~~g~GKSsl~N~il 21 (196)
T cd01852 2 RLVLV-GKTGAGKSATGNTIL 21 (196)
T ss_pred EEEEE-CCCCCCHHHHHHHhh
Confidence 46677 889999999987774
No 491
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.56 Score=34.02 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=60.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
+.+...++|+. ++|||+--..-++.+...|.+|+++-..... .++.+.. .. ..++.
T Consensus 3 ~g~l~~i~gpM-~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~-----R~~~~~V------------~S--r~G~~---- 58 (201)
T COG1435 3 MGWLEFIYGPM-FSGKTEELLRRARRYKEAGMKVLVFKPAIDT-----RYGVGKV------------SS--RIGLS---- 58 (201)
T ss_pred eEEEEEEEccC-cCcchHHHHHHHHHHHHcCCeEEEEeccccc-----cccccee------------ee--ccCCc----
Confidence 45566666555 5999999999999999999999998554332 1111100 00 00000
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhHHHHHHHh
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEHITVMECL 140 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~~~~l~~~ 140 (192)
.++...+ ....+.+.+.... +...|.|+||=..-++......+..+
T Consensus 59 -------~~A~~i~---~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~l 105 (201)
T COG1435 59 -------SEAVVIP---SDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNEL 105 (201)
T ss_pred -------ccceecC---ChHHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHH
Confidence 0111111 1223444444432 12268999999988888877788887
No 492
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.37 E-value=0.024 Score=41.77 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=26.5
Q ss_pred EEEEeCCCCccHhHHHHHHHHHH--------HhCCCeEEEEe
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGL--------KDKGFKVGILD 42 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~l--------a~~g~~vlliD 42 (192)
+.++.|-.|+|||++.+.++..+ ...+.+++++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67788888999999999999998 56788888873
No 493
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.36 E-value=0.043 Score=41.71 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCe--EEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFK--VGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~--vlliD~d~~ 46 (192)
...+.|.-.+|.-|+||||+|..|+..+++.+-+ |-+|-+|-.
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF 123 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence 3445555555888899999999999999997765 888888844
No 494
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.34 E-value=0.09 Score=43.36 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=64.0
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
++.-.|.|+| --|+||||.-..+-..+....+++.-|+=-.- - ..+++.-+.
T Consensus 256 ~p~GliLvTG-PTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE-~--------------------------~~~gI~Q~q 307 (500)
T COG2804 256 RPQGLILVTG-PTGSGKTTTLYAALSELNTPERNIITIEDPVE-Y--------------------------QLPGINQVQ 307 (500)
T ss_pred CCCeEEEEeC-CCCCCHHHHHHHHHHHhcCCCceEEEeeCCee-e--------------------------ecCCcceee
Confidence 3344666664 45699999999998888887777655542111 0 111111111
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHH
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVR 163 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~ 163 (192)
- ++. -+..+...++.+++ .+.|+|+|.= +.+...+-+.. .+...-+.++-+-=.......+.
T Consensus 308 V-----N~k-----~gltfa~~LRa~LR----qDPDvImVGE---IRD~ETAeiav-qAalTGHLVlSTlHtnda~~ai~ 369 (500)
T COG2804 308 V-----NPK-----IGLTFARALRAILR----QDPDVIMVGE---IRDLETAEIAV-QAALTGHLVLSTLHTNDAPGAIT 369 (500)
T ss_pred c-----ccc-----cCCCHHHHHHHHhc----cCCCeEEEec---cCCHHHHHHHH-HHHhcCCeEeeecccCchHHHHH
Confidence 0 010 12245667787776 7999999864 33332222211 11124455555555555566666
Q ss_pred HHHHH
Q psy9977 164 KEITF 168 (192)
Q Consensus 164 ~~~~~ 168 (192)
|+.+.
T Consensus 370 RL~~m 374 (500)
T COG2804 370 RLLEM 374 (500)
T ss_pred HHHHc
Confidence 65554
No 495
>PRK13948 shikimate kinase; Provisional
Probab=95.32 E-value=0.036 Score=39.88 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=24.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..|.++ |--|+||||++..||..| |+++ ||+|.
T Consensus 11 ~~I~Li-G~~GsGKSTvg~~La~~l---g~~~--iD~D~ 43 (182)
T PRK13948 11 TWVALA-GFMGTGKSRIGWELSRAL---MLHF--IDTDR 43 (182)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHc---CCCE--EECCH
Confidence 445555 777899999998888776 5555 69983
No 496
>PLN03108 Rab family protein; Provisional
Probab=95.27 E-value=0.64 Score=34.05 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=17.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
..-.|+++ +..|+||||+...++
T Consensus 5 ~~~kiviv-G~~gvGKStLi~~l~ 27 (210)
T PLN03108 5 YLFKYIII-GDTGVGKSCLLLQFT 27 (210)
T ss_pred cceEEEEE-CCCCCCHHHHHHHHH
Confidence 34467777 677899999987664
No 497
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.27 E-value=0.038 Score=36.83 Aligned_cols=32 Identities=38% Similarity=0.428 Sum_probs=25.1
Q ss_pred EeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 12 ~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.|..|+|||+++..+|..+ |.+++-+|+...
T Consensus 3 l~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~ 34 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYL---GFPFIEIDGSEL 34 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHT---TSEEEEEETTHH
T ss_pred EECcCCCCeeHHHHHHHhhc---cccccccccccc
Confidence 44777899999999999887 577777776643
No 498
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.23 E-value=0.029 Score=45.53 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=30.4
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhC--CCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDK--GFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~--g~~vlliD~d 44 (192)
.++.|..|+|||.++..++..+.++ |.+|+++.++
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 4555888999999999999999886 7899999875
No 499
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.20 E-value=0.062 Score=44.56 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=44.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.++++|+|+-. .........+ ..+|.+++|++....-.....+.+..+...+.+.+-+++||.|..
T Consensus 105 ~~~~i~~iDTPGh~-~f~~~~~~~l--~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 105 EKRKFIIADTPGHE-QYTRNMATGA--STCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred CCcEEEEEECCCcH-HHHHHHHHHH--hhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 46789999999732 2222222222 259999999998755444445555556666666555899999864
No 500
>PRK06851 hypothetical protein; Provisional
Probab=95.19 E-value=0.071 Score=42.59 Aligned_cols=46 Identities=28% Similarity=0.430 Sum_probs=37.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV 50 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~ 50 (192)
..+.+.++++..|+||||+...++..+.++|++|-++=+.....++
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~sl 73 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSL 73 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCce
Confidence 3466778889999999999999999999999998877555554344
Done!