Query psy9977
Match_columns 192
No_of_seqs 122 out of 1407
Neff 10.1
Searched_HMMs 29240
Date Sat Aug 17 00:32:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ph1_A Nucleotide-binding prot 100.0 4.5E-33 1.6E-37 210.3 18.5 185 3-191 15-199 (262)
2 3la6_A Tyrosine-protein kinase 100.0 4.8E-32 1.7E-36 206.6 13.8 174 2-186 88-266 (286)
3 3bfv_A CAPA1, CAPB2, membrane 100.0 1.4E-31 4.8E-36 202.8 12.9 173 3-186 79-256 (271)
4 3cio_A ETK, tyrosine-protein k 100.0 8.9E-31 3.1E-35 201.0 12.6 175 2-187 100-279 (299)
5 3ea0_A ATPase, para family; al 100.0 1.1E-30 3.8E-35 195.0 9.8 171 3-186 1-184 (245)
6 1g3q_A MIND ATPase, cell divis 100.0 1.6E-29 5.3E-34 188.0 14.5 170 5-187 1-176 (237)
7 1hyq_A MIND, cell division inh 100.0 2.7E-29 9.3E-34 189.5 15.0 169 5-187 1-175 (263)
8 3q9l_A Septum site-determining 100.0 3.1E-29 1E-33 188.8 14.4 168 5-186 1-185 (260)
9 3pg5_A Uncharacterized protein 100.0 3.2E-29 1.1E-33 197.1 13.0 176 6-186 1-254 (361)
10 3k9g_A PF-32 protein; ssgcid, 100.0 3.4E-29 1.1E-33 189.5 12.1 174 2-185 23-208 (267)
11 1wcv_1 SOJ, segregation protei 100.0 4.1E-29 1.4E-33 188.1 11.6 173 1-187 1-182 (257)
12 3kjh_A CO dehydrogenase/acetyl 100.0 1.9E-28 6.4E-33 183.5 13.1 167 8-186 2-195 (254)
13 3end_A Light-independent proto 100.0 6E-28 2E-32 186.1 14.0 171 3-186 38-225 (307)
14 4dzz_A Plasmid partitioning pr 100.0 2.1E-27 7.3E-32 172.8 15.6 137 6-186 1-142 (206)
15 3zq6_A Putative arsenical pump 100.0 1.1E-28 3.7E-33 191.5 7.3 187 5-192 12-272 (324)
16 3ug7_A Arsenical pump-driving 99.9 3.1E-28 1.1E-32 190.6 9.1 181 3-192 22-287 (349)
17 2oze_A ORF delta'; para, walke 99.9 5.2E-27 1.8E-31 180.1 13.4 176 5-186 33-224 (298)
18 3iqw_A Tail-anchored protein t 99.9 3.5E-27 1.2E-31 183.1 9.2 182 3-186 12-263 (334)
19 1cp2_A CP2, nitrogenase iron p 99.9 6.9E-27 2.4E-31 176.9 10.3 174 6-186 1-186 (269)
20 2afh_E Nitrogenase iron protei 99.9 1.3E-26 4.3E-31 177.3 11.8 170 6-186 2-189 (289)
21 3fwy_A Light-independent proto 99.9 5.3E-26 1.8E-30 175.2 14.9 173 4-186 46-232 (314)
22 2woo_A ATPase GET3; tail-ancho 99.9 1.8E-26 6.1E-31 179.4 10.7 183 4-191 16-271 (329)
23 3fkq_A NTRC-like two-domain pr 99.9 2.6E-26 8.8E-31 181.4 10.8 167 3-184 140-322 (373)
24 2woj_A ATPase GET3; tail-ancho 99.9 1.3E-26 4.3E-31 181.6 8.6 180 3-186 14-276 (354)
25 3ez2_A Plasmid partition prote 99.9 1.6E-26 5.6E-31 184.0 8.0 178 4-188 106-319 (398)
26 3ez9_A Para; DNA binding, wing 99.9 4.5E-26 1.5E-30 181.7 9.0 175 4-185 109-321 (403)
27 3io3_A DEHA2D07832P; chaperone 99.9 3.7E-26 1.3E-30 178.2 6.2 177 3-187 14-273 (348)
28 2xj4_A MIPZ; replication, cell 99.9 1.8E-26 6E-31 176.3 3.2 163 5-187 3-191 (286)
29 3cwq_A Para family chromosome 99.9 1.4E-24 4.7E-29 158.6 11.3 131 7-187 1-133 (209)
30 3igf_A ALL4481 protein; two-do 99.9 1.2E-21 4.1E-26 153.8 13.5 165 6-183 1-252 (374)
31 1ihu_A Arsenical pump-driving 99.9 3E-22 1E-26 166.6 8.3 173 5-187 6-240 (589)
32 1byi_A Dethiobiotin synthase; 99.9 1.6E-21 5.4E-26 143.6 10.5 169 6-186 1-179 (224)
33 1ihu_A Arsenical pump-driving 99.8 9.7E-22 3.3E-26 163.5 7.6 180 4-188 324-533 (589)
34 2xxa_A Signal recognition part 99.8 5.8E-18 2E-22 135.5 11.2 152 4-187 98-253 (433)
35 1zu4_A FTSY; GTPase, signal re 99.7 2.1E-16 7E-21 122.0 13.4 157 4-188 103-268 (320)
36 1j8m_F SRP54, signal recogniti 99.7 7.2E-17 2.5E-21 123.4 9.5 150 6-187 98-252 (297)
37 3of5_A Dethiobiotin synthetase 99.7 2.3E-16 7.7E-21 116.4 8.7 173 3-187 1-182 (228)
38 3qxc_A Dethiobiotin synthetase 99.7 7.8E-16 2.7E-20 114.1 10.5 169 2-186 17-201 (242)
39 3fgn_A Dethiobiotin synthetase 99.6 3.5E-15 1.2E-19 111.2 13.1 166 3-185 23-197 (251)
40 1ls1_A Signal recognition part 99.6 1.8E-15 6.1E-20 115.7 10.2 151 5-187 97-250 (295)
41 3dm5_A SRP54, signal recogniti 99.6 4.3E-15 1.5E-19 118.5 12.7 151 5-187 99-252 (443)
42 1yrb_A ATP(GTP)binding protein 99.6 5E-16 1.7E-20 116.6 6.9 162 4-186 11-183 (262)
43 2ffh_A Protein (FFH); SRP54, s 99.6 1.4E-15 4.8E-20 121.1 9.3 151 5-187 97-250 (425)
44 2j37_W Signal recognition part 99.6 1.1E-14 3.9E-19 118.2 9.7 152 4-187 99-253 (504)
45 2v3c_C SRP54, signal recogniti 99.5 3.7E-14 1.3E-18 113.5 10.8 150 5-187 98-251 (432)
46 3kl4_A SRP54, signal recogniti 99.5 1.7E-13 5.6E-18 109.4 10.8 151 5-187 96-251 (433)
47 1vma_A Cell division protein F 99.5 5.1E-13 1.8E-17 102.4 11.1 152 4-187 102-262 (306)
48 2px0_A Flagellar biosynthesis 99.4 3.2E-12 1.1E-16 97.7 11.2 146 4-187 103-252 (296)
49 3p32_A Probable GTPase RV1496/ 99.3 3.7E-12 1.3E-16 99.7 8.8 152 5-186 78-229 (355)
50 2p67_A LAO/AO transport system 99.1 6.3E-10 2.2E-14 86.6 9.8 152 4-186 54-206 (341)
51 2r8r_A Sensor protein; KDPD, P 99.0 1.1E-09 3.8E-14 79.8 6.7 45 4-48 3-47 (228)
52 2obn_A Hypothetical protein; s 98.9 1.2E-08 3.9E-13 79.0 9.1 144 5-186 151-311 (349)
53 4a0g_A Adenosylmethionine-8-am 98.8 1.2E-07 4E-12 81.8 14.9 65 117-185 201-271 (831)
54 3e70_C DPA, signal recognition 98.7 1.4E-07 4.7E-12 72.9 10.9 151 4-186 127-280 (328)
55 2yhs_A FTSY, cell division pro 98.6 2.2E-06 7.5E-11 69.3 16.2 152 4-187 291-451 (503)
56 3pzx_A Formate--tetrahydrofola 98.6 5.3E-08 1.8E-12 77.6 5.6 53 4-59 55-110 (557)
57 1rj9_A FTSY, signal recognitio 98.5 2.1E-06 7.1E-11 65.6 11.8 43 5-48 101-143 (304)
58 1g5t_A COB(I)alamin adenosyltr 98.3 3.2E-06 1.1E-10 60.2 8.8 37 8-45 30-66 (196)
59 2g0t_A Conserved hypothetical 98.3 2.1E-05 7.1E-10 61.0 12.8 141 5-183 168-323 (350)
60 2www_A Methylmalonic aciduria 98.3 4.1E-05 1.4E-09 59.6 14.6 42 6-48 74-115 (349)
61 1s1m_A CTP synthase; CTP synth 98.2 4E-06 1.4E-10 68.6 8.8 173 6-183 3-212 (545)
62 1vco_A CTP synthetase; tetrame 98.2 3E-06 1E-10 69.3 8.1 176 5-184 11-224 (550)
63 2wsm_A Hydrogenase expression/ 98.2 7.6E-07 2.6E-11 64.5 3.3 40 5-46 29-68 (221)
64 2rdo_7 EF-G, elongation factor 98.1 2.2E-05 7.6E-10 66.5 11.3 66 116-187 80-147 (704)
65 2h5e_A Peptide chain release f 98.1 7.2E-06 2.5E-10 67.3 7.5 68 116-187 80-147 (529)
66 1xjc_A MOBB protein homolog; s 98.1 6.4E-06 2.2E-10 57.5 5.8 42 4-46 2-43 (169)
67 2b8t_A Thymidine kinase; deoxy 98.1 9.4E-05 3.2E-09 53.9 12.1 37 8-44 13-49 (223)
68 2og2_A Putative signal recogni 98.0 0.00027 9.2E-09 55.1 15.1 43 4-47 155-197 (359)
69 3b9q_A Chloroplast SRP recepto 98.0 0.00022 7.6E-09 54.3 14.2 43 4-47 98-140 (302)
70 2qm8_A GTPase/ATPase; G protei 98.0 6.2E-05 2.1E-09 58.3 10.8 42 5-47 54-95 (337)
71 2c78_A Elongation factor TU-A; 97.9 0.00019 6.6E-09 56.9 12.6 69 116-187 73-141 (405)
72 3iev_A GTP-binding protein ERA 97.9 0.00053 1.8E-08 52.3 13.7 65 117-187 58-135 (308)
73 3vqt_A RF-3, peptide chain rel 97.8 3.1E-05 1.1E-09 63.8 6.7 66 116-187 98-165 (548)
74 1xp8_A RECA protein, recombina 97.8 0.00011 3.7E-09 57.6 9.0 40 6-46 74-113 (366)
75 1xx6_A Thymidine kinase; NESG, 97.8 0.001 3.5E-08 47.2 12.8 37 5-42 7-43 (191)
76 1d2e_A Elongation factor TU (E 97.7 0.0002 6.8E-09 56.7 9.5 69 116-187 64-132 (397)
77 2xex_A Elongation factor G; GT 97.7 0.00038 1.3E-08 59.0 11.1 66 116-187 73-140 (693)
78 2c5m_A CTP synthase; cytidine 97.7 0.00043 1.5E-08 50.8 9.7 177 4-180 21-237 (294)
79 2elf_A Protein translation elo 97.7 0.00045 1.5E-08 54.2 10.5 67 116-186 58-125 (370)
80 1wf3_A GTP-binding protein; GT 97.6 0.00053 1.8E-08 52.2 10.5 69 116-187 53-130 (301)
81 1z2a_A RAS-related protein RAB 97.6 0.00028 9.6E-09 48.1 8.2 65 117-187 53-122 (168)
82 1dar_A EF-G, elongation factor 97.6 0.00036 1.2E-08 59.1 10.4 66 116-187 75-142 (691)
83 2ce2_X GTPase HRAS; signaling 97.6 0.00083 2.8E-08 45.4 10.6 66 116-187 49-121 (166)
84 4fn5_A EF-G 1, elongation fact 97.6 0.00095 3.2E-08 56.7 12.8 66 116-187 83-150 (709)
85 2yvu_A Probable adenylyl-sulfa 97.6 0.0001 3.5E-09 51.9 5.6 40 6-46 13-52 (186)
86 2dyk_A GTP-binding protein; GT 97.6 0.0017 5.6E-08 43.9 11.5 68 117-186 48-120 (161)
87 3iby_A Ferrous iron transport 97.5 0.00077 2.6E-08 50.1 9.9 67 117-186 47-122 (256)
88 4i1u_A Dephospho-COA kinase; s 97.5 3.4E-05 1.2E-09 55.6 2.2 34 5-45 8-41 (210)
89 1u94_A RECA protein, recombina 97.5 0.00013 4.5E-09 56.9 5.6 39 7-46 64-102 (356)
90 2atv_A RERG, RAS-like estrogen 97.5 0.0014 4.9E-08 46.1 10.5 67 116-187 74-145 (196)
91 2erx_A GTP-binding protein DI- 97.5 0.0012 3.9E-08 45.1 9.8 65 116-186 49-121 (172)
92 1a7j_A Phosphoribulokinase; tr 97.5 7.7E-05 2.6E-09 56.6 4.0 44 3-47 2-45 (290)
93 1u8z_A RAS-related protein RAL 97.5 0.0018 6.2E-08 43.8 10.7 65 116-186 50-121 (168)
94 1z0f_A RAB14, member RAS oncog 97.5 0.0018 6.3E-08 44.4 10.6 64 117-186 63-132 (179)
95 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00015 5.3E-09 53.9 5.3 40 6-46 4-43 (260)
96 2efe_B Small GTP-binding prote 97.4 0.0012 4.2E-08 45.5 9.4 65 117-186 60-129 (181)
97 3pqc_A Probable GTP-binding pr 97.4 0.0022 7.6E-08 44.7 10.8 23 5-28 22-44 (195)
98 1np6_A Molybdopterin-guanine d 97.4 0.00032 1.1E-08 49.1 6.1 41 5-46 5-45 (174)
99 2a9k_A RAS-related protein RAL 97.4 0.0029 9.8E-08 43.7 11.1 64 117-186 65-135 (187)
100 3t1o_A Gliding protein MGLA; G 97.4 0.0033 1.1E-07 43.9 11.4 67 116-186 72-147 (198)
101 3con_A GTPase NRAS; structural 97.4 0.002 6.7E-08 45.0 10.1 67 116-186 67-138 (190)
102 2nzj_A GTP-binding protein REM 97.4 0.0016 5.6E-08 44.5 9.6 69 117-187 51-124 (175)
103 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00038 1.3E-08 50.3 6.5 40 6-46 23-62 (235)
104 3oes_A GTPase rhebl1; small GT 97.4 0.00082 2.8E-08 47.6 8.1 65 116-186 70-141 (201)
105 1nks_A Adenylate kinase; therm 97.4 0.0002 6.8E-09 50.3 4.8 38 6-44 1-38 (194)
106 1r2q_A RAS-related protein RAB 97.4 0.0024 8.1E-08 43.4 10.2 66 117-186 54-123 (170)
107 3clv_A RAB5 protein, putative; 97.4 0.0067 2.3E-07 42.4 12.7 62 118-185 93-158 (208)
108 1c1y_A RAS-related protein RAP 97.4 0.004 1.4E-07 42.1 11.2 65 116-186 49-120 (167)
109 4dcu_A GTP-binding protein ENG 97.4 0.00077 2.6E-08 54.3 8.5 70 116-186 69-143 (456)
110 2j9r_A Thymidine kinase; TK1, 97.4 0.00024 8.4E-09 51.2 5.0 36 8-43 29-64 (214)
111 2kjq_A DNAA-related protein; s 97.4 0.0013 4.3E-08 44.7 8.3 37 7-44 37-73 (149)
112 3t5g_A GTP-binding protein RHE 97.3 0.00067 2.3E-08 47.0 7.1 66 117-186 53-123 (181)
113 3j2k_7 ERF3, eukaryotic polype 97.3 0.0023 8E-08 51.2 11.0 68 116-186 93-167 (439)
114 2il1_A RAB12; G-protein, GDP, 97.3 0.0025 8.6E-08 44.7 10.1 66 117-186 74-143 (192)
115 2bov_A RAla, RAS-related prote 97.3 0.0041 1.4E-07 43.8 11.2 64 117-186 61-131 (206)
116 2ywe_A GTP-binding protein LEP 97.3 0.0014 4.9E-08 54.5 9.7 68 116-187 71-138 (600)
117 3uie_A Adenylyl-sulfate kinase 97.3 0.00027 9.3E-09 50.3 4.7 44 4-48 23-66 (200)
118 1uj2_A Uridine-cytidine kinase 97.3 0.00025 8.7E-09 52.4 4.6 42 4-46 20-66 (252)
119 1ky3_A GTP-binding protein YPT 97.3 0.0018 6.2E-08 44.6 8.8 67 116-186 56-130 (182)
120 3tkl_A RAS-related protein RAB 97.3 0.002 6.8E-08 45.1 9.1 65 117-187 64-134 (196)
121 3sjy_A Translation initiation 97.3 0.0026 8.9E-08 50.3 10.6 67 117-186 74-141 (403)
122 1kao_A RAP2A; GTP-binding prot 97.3 0.0058 2E-07 41.2 11.2 64 117-186 50-120 (167)
123 2fg5_A RAB-22B, RAS-related pr 97.3 0.0038 1.3E-07 43.7 10.5 65 116-186 70-140 (192)
124 1rz3_A Hypothetical protein rb 97.3 0.00048 1.6E-08 49.1 5.8 42 5-47 21-62 (201)
125 3io5_A Recombination and repai 97.3 0.00077 2.6E-08 51.6 7.1 37 10-46 31-69 (333)
126 1z08_A RAS-related protein RAB 97.3 0.0027 9.3E-08 43.2 9.4 67 116-186 53-123 (170)
127 1zbd_A Rabphilin-3A; G protein 97.2 0.0038 1.3E-07 44.0 10.3 67 117-187 56-126 (203)
128 1r8s_A ADP-ribosylation factor 97.2 0.015 5.2E-07 39.1 12.9 67 116-186 42-113 (164)
129 2j69_A Bacterial dynamin-like 97.2 0.0018 6.3E-08 54.9 9.7 66 118-186 174-242 (695)
130 1jny_A EF-1-alpha, elongation 97.2 0.002 6.7E-08 51.6 9.4 69 116-187 82-157 (435)
131 2fv8_A H6, RHO-related GTP-bin 97.2 0.0011 3.6E-08 47.3 7.1 67 117-187 72-142 (207)
132 2gf9_A RAS-related protein RAB 97.2 0.0015 5E-08 45.7 7.7 66 117-186 70-139 (189)
133 2p5s_A RAS and EF-hand domain 97.2 0.002 6.8E-08 45.5 8.4 66 117-186 76-145 (199)
134 3bh0_A DNAB-like replicative h 97.2 0.00058 2E-08 52.3 5.8 39 8-46 69-107 (315)
135 3i8s_A Ferrous iron transport 97.2 0.0035 1.2E-07 46.9 10.0 67 117-186 49-124 (274)
136 2g6b_A RAS-related protein RAB 97.2 0.0032 1.1E-07 43.3 9.2 67 117-187 59-129 (180)
137 3bc1_A RAS-related protein RAB 97.2 0.0074 2.5E-07 41.8 11.1 67 117-187 69-140 (195)
138 3cph_A RAS-related protein SEC 97.2 0.0023 7.8E-08 45.5 8.5 64 117-186 68-137 (213)
139 1ek0_A Protein (GTP-binding pr 97.2 0.0034 1.2E-07 42.6 9.1 67 117-187 51-121 (170)
140 2dr3_A UPF0273 protein PH0284; 97.1 0.00065 2.2E-08 49.6 5.5 39 7-46 24-62 (247)
141 2lkc_A Translation initiation 97.1 0.0011 3.8E-08 45.6 6.4 25 3-28 5-29 (178)
142 1mky_A Probable GTP-binding pr 97.1 0.0051 1.8E-07 49.2 11.1 21 7-28 2-22 (439)
143 2gf0_A GTP-binding protein DI- 97.1 0.0034 1.2E-07 44.0 9.1 66 116-187 54-127 (199)
144 3nva_A CTP synthase; rossman f 97.1 0.0014 4.7E-08 53.3 7.5 175 5-182 2-213 (535)
145 1z06_A RAS-related protein RAB 97.1 0.0045 1.6E-07 43.1 9.6 67 117-186 68-139 (189)
146 1x3s_A RAS-related protein RAB 97.1 0.0018 6.3E-08 45.2 7.5 65 116-186 62-133 (195)
147 1z0j_A RAB-22, RAS-related pro 97.1 0.004 1.4E-07 42.3 9.0 66 117-186 54-123 (170)
148 1g16_A RAS-related protein SEC 97.1 0.0028 9.6E-08 43.1 8.1 64 117-186 51-120 (170)
149 2f1r_A Molybdopterin-guanine d 97.1 0.00055 1.9E-08 47.7 4.5 40 6-46 2-41 (171)
150 4a1f_A DNAB helicase, replicat 97.1 0.00075 2.6E-08 52.2 5.6 39 9-47 48-86 (338)
151 2pez_A Bifunctional 3'-phospho 97.1 0.00083 2.8E-08 46.8 5.4 43 5-48 4-46 (179)
152 2qu8_A Putative nucleolar GTP- 97.1 0.0055 1.9E-07 44.2 10.0 68 117-186 75-154 (228)
153 3hr8_A Protein RECA; alpha and 97.1 0.0011 3.8E-08 51.6 6.5 40 6-46 61-100 (356)
154 1zj6_A ADP-ribosylation factor 97.1 0.018 6.3E-07 39.8 12.4 65 117-187 59-130 (187)
155 1zd9_A ADP-ribosylation factor 97.1 0.013 4.4E-07 40.8 11.6 68 116-187 65-137 (188)
156 2iwr_A Centaurin gamma 1; ANK 97.1 0.012 4.1E-07 40.4 11.2 61 117-186 53-120 (178)
157 4dsu_A GTPase KRAS, isoform 2B 97.1 0.012 4.2E-07 40.6 11.4 64 117-186 51-121 (189)
158 1vg8_A RAS-related protein RAB 97.1 0.0017 5.7E-08 46.0 6.9 68 116-187 55-130 (207)
159 3cb4_D GTP-binding protein LEP 97.1 0.0021 7.1E-08 53.5 8.3 68 116-187 69-136 (599)
160 2hjg_A GTP-binding protein ENG 97.1 0.00046 1.6E-08 55.2 4.3 68 116-186 49-123 (436)
161 2ew1_A RAS-related protein RAB 97.1 0.0042 1.4E-07 44.1 9.0 66 117-186 74-143 (201)
162 2dy1_A Elongation factor G; tr 97.1 0.0035 1.2E-07 52.8 9.8 68 116-187 72-139 (665)
163 3p26_A Elongation factor 1 alp 97.1 0.0044 1.5E-07 50.2 10.0 69 116-187 109-184 (483)
164 2b6h_A ADP-ribosylation factor 97.1 0.0097 3.3E-07 41.7 10.7 66 116-187 71-143 (192)
165 3bgw_A DNAB-like replicative h 97.0 0.00076 2.6E-08 54.1 5.4 41 8-48 198-238 (444)
166 2yc2_C IFT27, small RAB-relate 97.0 0.002 6.8E-08 45.5 7.1 67 117-187 72-145 (208)
167 3e2i_A Thymidine kinase; Zn-bi 97.0 0.0069 2.4E-07 43.7 9.7 37 6-43 28-64 (219)
168 3ihw_A Centg3; RAS, centaurin, 97.0 0.014 4.8E-07 40.6 11.2 61 117-186 66-131 (184)
169 1nn5_A Similar to deoxythymidy 97.0 0.0011 3.6E-08 47.4 5.4 37 5-42 8-44 (215)
170 3lxw_A GTPase IMAP family memb 97.0 0.013 4.5E-07 43.0 11.5 69 116-186 68-151 (247)
171 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.0054 1.8E-07 42.0 8.9 67 117-187 55-129 (177)
172 3avx_A Elongation factor TS, e 97.0 0.0026 9E-08 56.6 8.7 69 116-187 357-425 (1289)
173 1m2o_B GTP-binding protein SAR 97.0 0.0073 2.5E-07 42.3 9.7 66 117-186 66-136 (190)
174 3q85_A GTP-binding protein REM 97.0 0.003 1E-07 43.0 7.5 64 117-186 50-121 (169)
175 1nrj_B SR-beta, signal recogni 97.0 0.0027 9.2E-08 45.4 7.5 69 117-187 54-133 (218)
176 2y8e_A RAB-protein 6, GH09086P 97.0 0.0071 2.4E-07 41.4 9.5 64 117-186 62-131 (179)
177 2zr9_A Protein RECA, recombina 97.0 0.00091 3.1E-08 52.0 5.3 40 6-46 61-100 (349)
178 2hup_A RAS-related protein RAB 97.0 0.0081 2.8E-07 42.4 9.9 66 117-186 77-146 (201)
179 3tw8_B RAS-related protein RAB 97.0 0.0017 5.7E-08 44.7 6.1 64 117-186 57-125 (181)
180 3lxx_A GTPase IMAP family memb 97.0 0.019 6.3E-07 41.8 12.0 22 6-28 29-50 (239)
181 3a1s_A Iron(II) transport prot 97.0 0.0043 1.5E-07 46.0 8.6 67 117-186 51-122 (258)
182 2ged_A SR-beta, signal recogni 97.0 0.0048 1.6E-07 43.1 8.4 69 117-187 90-169 (193)
183 2vo1_A CTP synthase 1; pyrimid 97.0 0.017 6E-07 42.7 11.3 177 4-180 21-237 (295)
184 2bme_A RAB4A, RAS-related prot 96.9 0.0034 1.2E-07 43.4 7.4 66 117-186 58-127 (186)
185 1m7g_A Adenylylsulfate kinase; 96.9 0.001 3.5E-08 47.7 4.8 41 5-46 24-65 (211)
186 1ega_A Protein (GTP-binding pr 96.9 0.0032 1.1E-07 47.8 7.6 22 6-28 8-29 (301)
187 2gco_A H9, RHO-related GTP-bin 96.9 0.0019 6.6E-08 45.6 6.0 67 117-187 72-142 (201)
188 1svi_A GTP-binding protein YSX 96.9 0.0059 2E-07 42.6 8.5 23 5-28 22-44 (195)
189 2oil_A CATX-8, RAS-related pro 96.9 0.014 5E-07 40.6 10.4 66 116-186 72-142 (193)
190 2a5j_A RAS-related protein RAB 96.9 0.0047 1.6E-07 43.2 7.9 64 117-186 69-138 (191)
191 2cvh_A DNA repair and recombin 96.9 0.0012 4.2E-08 47.2 4.8 34 9-45 22-55 (220)
192 3dz8_A RAS-related protein RAB 96.9 0.0016 5.6E-08 45.6 5.3 67 116-186 70-140 (191)
193 2w58_A DNAI, primosome compone 96.8 0.0014 4.9E-08 46.4 4.9 37 7-44 55-91 (202)
194 1kht_A Adenylate kinase; phosp 96.8 0.00089 3.1E-08 46.9 3.7 37 7-44 4-40 (192)
195 2hf9_A Probable hydrogenase ni 96.8 0.0021 7.2E-08 46.2 5.8 40 5-46 37-76 (226)
196 1upt_A ARL1, ADP-ribosylation 96.8 0.0094 3.2E-07 40.5 8.8 67 117-187 50-121 (171)
197 2bcg_Y Protein YP2, GTP-bindin 96.8 0.003 1E-07 44.7 6.3 67 117-187 56-126 (206)
198 3k53_A Ferrous iron transport 96.8 0.0022 7.4E-08 47.9 5.8 68 116-186 48-121 (271)
199 3ec2_A DNA replication protein 96.8 0.0011 3.7E-08 46.2 3.9 37 6-43 38-75 (180)
200 2fn4_A P23, RAS-related protei 96.8 0.015 5.1E-07 39.8 9.8 64 117-186 56-126 (181)
201 1qhx_A CPT, protein (chloramph 96.7 0.0011 3.7E-08 46.0 3.5 34 8-44 4-37 (178)
202 3asz_A Uridine kinase; cytidin 96.7 0.0021 7.3E-08 45.8 5.0 42 1-46 1-42 (211)
203 1wb1_A Translation elongation 96.7 0.008 2.7E-07 48.7 8.9 67 117-187 72-138 (482)
204 3d3q_A TRNA delta(2)-isopenten 96.7 0.0017 5.8E-08 50.2 4.5 41 1-46 1-41 (340)
205 1fzq_A ADP-ribosylation factor 96.7 0.032 1.1E-06 38.5 10.7 67 117-187 59-130 (181)
206 3kkq_A RAS-related protein M-R 96.7 0.033 1.1E-06 38.3 10.8 64 117-186 65-135 (183)
207 1f6b_A SAR1; gtpases, N-termin 96.7 0.0099 3.4E-07 41.9 8.1 66 117-186 68-138 (198)
208 2zts_A Putative uncharacterize 96.7 0.0027 9.2E-08 46.3 5.3 39 8-46 31-70 (251)
209 1q57_A DNA primase/helicase; d 96.7 0.0017 5.9E-08 52.8 4.6 38 9-46 244-282 (503)
210 2gks_A Bifunctional SAT/APS ki 96.6 0.0018 6.3E-08 53.3 4.7 40 6-46 372-411 (546)
211 1g7s_A Translation initiation 96.6 0.0071 2.4E-07 50.3 8.2 67 117-187 69-135 (594)
212 3c8u_A Fructokinase; YP_612366 96.6 0.004 1.4E-07 44.5 5.9 41 4-45 20-60 (208)
213 2q6t_A DNAB replication FORK h 96.6 0.0027 9.2E-08 50.9 5.5 38 9-46 202-240 (444)
214 4gzl_A RAS-related C3 botulinu 96.6 0.0055 1.9E-07 43.4 6.6 67 116-186 76-146 (204)
215 1qf9_A UMP/CMP kinase, protein 96.6 0.0021 7.1E-08 45.0 4.3 38 1-44 1-38 (194)
216 1x6v_B Bifunctional 3'-phospho 96.6 0.0023 7.8E-08 53.5 5.1 44 7-50 52-95 (630)
217 2r6a_A DNAB helicase, replicat 96.6 0.0033 1.1E-07 50.5 5.9 38 9-46 205-243 (454)
218 3t61_A Gluconokinase; PSI-biol 96.6 0.0014 4.8E-08 46.5 3.2 36 5-46 17-52 (202)
219 3bwd_D RAC-like GTP-binding pr 96.6 0.0035 1.2E-07 43.2 5.2 66 117-186 55-124 (182)
220 3bos_A Putative DNA replicatio 96.6 0.0033 1.1E-07 45.4 5.3 40 6-46 52-91 (242)
221 2o52_A RAS-related protein RAB 96.6 0.0042 1.4E-07 43.9 5.7 64 117-186 73-142 (200)
222 3trf_A Shikimate kinase, SK; a 96.6 0.0014 4.9E-08 45.7 3.2 36 4-45 3-38 (185)
223 3gj0_A GTP-binding nuclear pro 96.6 0.0076 2.6E-07 43.1 7.1 66 116-187 62-132 (221)
224 1zo1_I IF2, translation initia 96.5 0.0028 9.4E-08 51.6 5.0 67 117-187 50-116 (501)
225 1m8p_A Sulfate adenylyltransfe 96.5 0.0025 8.7E-08 52.8 4.9 40 6-46 396-436 (573)
226 2orw_A Thymidine kinase; TMTK, 96.5 0.0031 1.1E-07 44.4 4.7 37 7-44 4-40 (184)
227 2pbr_A DTMP kinase, thymidylat 96.5 0.0044 1.5E-07 43.3 5.5 34 8-42 2-35 (195)
228 4djt_A GTP-binding nuclear pro 96.5 0.0054 1.8E-07 43.8 6.0 64 118-187 61-130 (218)
229 3cpj_B GTP-binding protein YPT 96.5 0.01 3.5E-07 42.6 7.5 66 117-186 61-130 (223)
230 2z0h_A DTMP kinase, thymidylat 96.5 0.0047 1.6E-07 43.3 5.5 34 8-42 2-35 (197)
231 2xtp_A GTPase IMAP family memb 96.5 0.046 1.6E-06 40.2 11.0 22 6-28 22-43 (260)
232 3ld9_A DTMP kinase, thymidylat 96.5 0.0039 1.3E-07 45.3 5.0 42 4-46 19-61 (223)
233 3cbq_A GTP-binding protein REM 96.4 0.033 1.1E-06 39.1 9.7 65 117-186 71-142 (195)
234 1m7b_A RND3/RHOE small GTP-bin 96.4 0.012 4.1E-07 40.7 7.3 68 116-187 53-124 (184)
235 1g8f_A Sulfate adenylyltransfe 96.4 0.0027 9.3E-08 51.7 4.4 39 6-45 395-435 (511)
236 2plr_A DTMP kinase, probable t 96.4 0.0045 1.5E-07 43.9 5.1 33 7-41 5-37 (213)
237 3izy_P Translation initiation 96.4 0.002 6.7E-08 52.9 3.4 65 118-186 52-116 (537)
238 1uf9_A TT1252 protein; P-loop, 96.4 0.0025 8.6E-08 45.0 3.6 36 3-45 5-40 (203)
239 3lvq_E ARF-GAP with SH3 domain 96.4 0.029 9.9E-07 45.5 10.2 67 116-186 364-435 (497)
240 3tqc_A Pantothenate kinase; bi 96.4 0.0059 2E-07 46.8 5.8 41 5-46 91-133 (321)
241 1knq_A Gluconate kinase; ALFA/ 96.4 0.0052 1.8E-07 42.4 5.1 36 5-46 7-42 (175)
242 1cr0_A DNA primase/helicase; R 96.4 0.0052 1.8E-07 46.3 5.3 38 7-45 36-74 (296)
243 2wwf_A Thymidilate kinase, put 96.3 0.0059 2E-07 43.4 5.2 36 6-42 10-45 (212)
244 2x77_A ADP-ribosylation factor 96.3 0.011 3.6E-07 41.2 6.4 65 117-187 65-136 (189)
245 2qgz_A Helicase loader, putati 96.3 0.0051 1.8E-07 46.9 5.1 37 7-44 153-190 (308)
246 1odf_A YGR205W, hypothetical 3 96.3 0.0035 1.2E-07 47.4 4.0 41 5-46 30-73 (290)
247 2z43_A DNA repair and recombin 96.3 0.0038 1.3E-07 47.9 4.2 39 7-46 108-152 (324)
248 4eun_A Thermoresistant glucoki 96.3 0.0046 1.6E-07 43.8 4.4 36 5-46 28-63 (200)
249 1sq5_A Pantothenate kinase; P- 96.3 0.0062 2.1E-07 46.4 5.4 42 4-46 78-121 (308)
250 2axn_A 6-phosphofructo-2-kinas 96.3 0.0052 1.8E-07 50.3 5.2 41 6-46 34-74 (520)
251 3q3j_B RHO-related GTP-binding 96.3 0.021 7.3E-07 40.7 8.0 68 116-187 73-144 (214)
252 3o47_A ADP-ribosylation factor 96.3 0.017 5.8E-07 44.4 7.8 66 116-187 207-279 (329)
253 2j0v_A RAC-like GTP-binding pr 96.3 0.018 6E-07 40.8 7.4 67 116-186 55-125 (212)
254 2fh5_B SR-beta, signal recogni 96.2 0.07 2.4E-06 37.7 10.6 68 117-187 53-128 (214)
255 3def_A T7I23.11 protein; chlor 96.2 0.028 9.6E-07 41.5 8.6 72 116-187 82-164 (262)
256 4edh_A DTMP kinase, thymidylat 96.2 0.008 2.7E-07 43.3 5.3 35 8-42 7-41 (213)
257 1y63_A LMAJ004144AAA protein; 96.2 0.005 1.7E-07 43.1 4.1 36 4-44 8-43 (184)
258 2hjg_A GTP-binding protein ENG 96.1 0.0081 2.8E-07 48.0 5.7 22 6-28 175-196 (436)
259 1ly1_A Polynucleotide kinase; 96.1 0.0052 1.8E-07 42.4 4.0 35 7-45 2-36 (181)
260 3reg_A RHO-like small GTPase; 96.1 0.017 5.7E-07 40.4 6.7 68 116-187 69-140 (194)
261 3foz_A TRNA delta(2)-isopenten 96.1 0.0098 3.3E-07 45.3 5.7 40 2-46 5-44 (316)
262 2v54_A DTMP kinase, thymidylat 96.1 0.0044 1.5E-07 43.8 3.6 35 6-43 4-38 (204)
263 1v5w_A DMC1, meiotic recombina 96.1 0.0068 2.3E-07 46.9 4.8 38 9-46 124-167 (343)
264 1jbk_A CLPB protein; beta barr 96.1 0.0082 2.8E-07 41.4 4.9 36 7-43 44-86 (195)
265 2grj_A Dephospho-COA kinase; T 96.1 0.0074 2.5E-07 42.7 4.6 35 6-46 12-46 (192)
266 1gwn_A RHO-related GTP-binding 96.1 0.023 7.8E-07 40.3 7.3 68 116-187 74-145 (205)
267 1gvn_B Zeta; postsegregational 96.1 0.0044 1.5E-07 46.7 3.6 40 4-46 30-69 (287)
268 3hjn_A DTMP kinase, thymidylat 96.0 0.011 3.7E-07 42.0 5.3 31 12-42 5-35 (197)
269 1e6c_A Shikimate kinase; phosp 95.9 0.0052 1.8E-07 42.2 3.3 33 6-44 2-34 (173)
270 1gtv_A TMK, thymidylate kinase 95.9 0.0032 1.1E-07 44.9 2.1 34 8-42 2-35 (214)
271 3j25_A Tetracycline resistance 95.9 0.0034 1.2E-07 52.7 2.6 68 116-187 65-132 (638)
272 2ze6_A Isopentenyl transferase 95.9 0.0077 2.6E-07 44.5 4.2 33 7-45 2-34 (253)
273 2p65_A Hypothetical protein PF 95.9 0.0088 3E-07 41.2 4.3 26 7-33 44-69 (187)
274 3kb2_A SPBC2 prophage-derived 95.9 0.0068 2.3E-07 41.4 3.7 33 7-45 2-34 (173)
275 2p5t_B PEZT; postsegregational 95.9 0.0061 2.1E-07 44.9 3.5 39 6-47 31-69 (253)
276 3dpu_A RAB family protein; roc 95.9 0.042 1.4E-06 45.0 8.8 63 116-186 96-162 (535)
277 1l8q_A Chromosomal replication 95.8 0.0099 3.4E-07 45.3 4.7 37 7-44 38-74 (324)
278 3mca_A HBS1, elongation factor 95.8 0.0012 4.2E-08 54.9 -0.4 67 116-187 253-328 (592)
279 2r2a_A Uncharacterized protein 95.8 0.0062 2.1E-07 43.4 3.3 36 9-44 7-48 (199)
280 2qt1_A Nicotinamide riboside k 95.8 0.0056 1.9E-07 43.5 3.0 37 5-46 20-56 (207)
281 1via_A Shikimate kinase; struc 95.8 0.0059 2E-07 42.2 3.1 34 6-45 4-37 (175)
282 3crm_A TRNA delta(2)-isopenten 95.8 0.011 3.6E-07 45.4 4.6 37 4-46 3-39 (323)
283 1jjv_A Dephospho-COA kinase; P 95.8 0.0081 2.8E-07 42.6 3.8 33 6-45 2-34 (206)
284 4hlc_A DTMP kinase, thymidylat 95.8 0.014 4.9E-07 41.7 5.1 35 6-42 2-36 (205)
285 3t5d_A Septin-7; GTP-binding p 95.8 0.15 5.3E-06 37.8 10.9 20 7-27 9-28 (274)
286 2e87_A Hypothetical protein PH 95.8 0.079 2.7E-06 41.1 9.6 23 5-28 166-188 (357)
287 3lv8_A DTMP kinase, thymidylat 95.8 0.011 3.9E-07 43.2 4.6 34 7-41 28-62 (236)
288 2rhm_A Putative kinase; P-loop 95.8 0.0076 2.6E-07 42.1 3.5 32 8-44 6-37 (193)
289 3tr5_A RF-3, peptide chain rel 95.7 0.016 5.6E-07 47.5 5.9 67 116-186 80-146 (528)
290 1ukz_A Uridylate kinase; trans 95.7 0.0096 3.3E-07 42.1 3.9 36 3-44 12-47 (203)
291 2if2_A Dephospho-COA kinase; a 95.7 0.0055 1.9E-07 43.4 2.7 32 7-45 2-33 (204)
292 1nlf_A Regulatory protein REPA 95.7 0.016 5.4E-07 43.3 5.1 38 7-45 31-78 (279)
293 3th5_A RAS-related C3 botulinu 94.6 0.0019 6.6E-08 45.7 0.0 67 116-186 76-146 (204)
294 1n0w_A DNA repair protein RAD5 95.6 0.013 4.5E-07 42.4 4.5 38 7-45 25-68 (243)
295 1cke_A CK, MSSA, protein (cyti 95.6 0.011 3.6E-07 42.6 3.9 37 1-44 1-37 (227)
296 3vaa_A Shikimate kinase, SK; s 95.6 0.01 3.5E-07 41.9 3.8 34 5-44 24-57 (199)
297 2f6r_A COA synthase, bifunctio 95.6 0.013 4.5E-07 43.9 4.5 35 4-45 73-107 (281)
298 4dkx_A RAS-related protein RAB 95.6 0.14 4.6E-06 36.8 9.7 67 116-186 60-130 (216)
299 2i1q_A DNA repair and recombin 95.5 0.011 3.7E-07 45.2 3.7 38 9-46 100-153 (322)
300 2jeo_A Uridine-cytidine kinase 95.5 0.022 7.6E-07 41.6 5.3 40 5-45 24-68 (245)
301 2ehv_A Hypothetical protein PH 95.5 0.02 6.7E-07 41.6 5.0 40 6-46 30-70 (251)
302 4eaq_A DTMP kinase, thymidylat 95.5 0.023 7.7E-07 41.3 5.2 35 5-41 25-59 (229)
303 3v9p_A DTMP kinase, thymidylat 95.5 0.011 3.7E-07 43.1 3.5 35 8-42 26-64 (227)
304 4dhe_A Probable GTP-binding pr 95.5 0.031 1.1E-06 39.8 5.9 70 116-186 77-156 (223)
305 2iyv_A Shikimate kinase, SK; t 95.4 0.009 3.1E-07 41.5 2.9 33 7-45 3-35 (184)
306 1zuh_A Shikimate kinase; alpha 95.4 0.013 4.4E-07 40.1 3.6 35 5-45 6-40 (168)
307 1aky_A Adenylate kinase; ATP:A 95.4 0.013 4.6E-07 42.0 3.8 34 4-43 2-35 (220)
308 1kag_A SKI, shikimate kinase I 95.4 0.0088 3E-07 41.0 2.7 33 6-44 4-36 (173)
309 4tmk_A Protein (thymidylate ki 95.4 0.019 6.6E-07 41.3 4.5 35 6-41 3-38 (213)
310 1zp6_A Hypothetical protein AT 95.4 0.011 3.7E-07 41.3 3.2 35 6-44 9-43 (191)
311 3ake_A Cytidylate kinase; CMP 95.4 0.01 3.4E-07 42.0 3.0 33 7-45 3-35 (208)
312 4fcw_A Chaperone protein CLPB; 95.3 0.021 7.3E-07 43.0 5.0 38 8-46 49-86 (311)
313 1f60_A Elongation factor EEF1A 95.3 0.045 1.5E-06 44.0 7.0 69 116-187 83-158 (458)
314 3do6_A Formate--tetrahydrofola 95.3 0.037 1.3E-06 44.4 6.2 51 4-57 41-94 (543)
315 3aez_A Pantothenate kinase; tr 95.3 0.033 1.1E-06 42.5 6.0 42 4-46 88-131 (312)
316 1vht_A Dephospho-COA kinase; s 95.3 0.022 7.5E-07 40.7 4.6 31 7-44 5-35 (218)
317 1tev_A UMP-CMP kinase; ploop, 95.3 0.016 5.3E-07 40.4 3.8 32 7-44 4-35 (196)
318 1zun_B Sulfate adenylate trans 95.3 0.055 1.9E-06 43.1 7.3 69 116-187 102-170 (434)
319 3n70_A Transport activator; si 95.3 0.011 3.8E-07 39.6 2.8 36 9-46 27-62 (145)
320 3lw7_A Adenylate kinase relate 95.2 0.012 4.1E-07 40.1 3.0 27 9-39 3-29 (179)
321 2qby_B CDC6 homolog 3, cell di 95.2 0.019 6.4E-07 44.6 4.4 39 6-45 45-91 (384)
322 2vli_A Antibiotic resistance p 95.2 0.0091 3.1E-07 41.3 2.3 31 5-39 4-34 (183)
323 1mky_A Probable GTP-binding pr 95.2 0.32 1.1E-05 38.7 11.6 22 6-28 180-201 (439)
324 3cmw_A Protein RECA, recombina 95.2 0.022 7.7E-07 52.6 5.2 39 9-47 734-772 (1706)
325 3iij_A Coilin-interacting nucl 95.2 0.014 4.8E-07 40.4 3.2 32 7-44 12-43 (180)
326 3cmw_A Protein RECA, recombina 95.2 0.028 9.4E-07 52.0 5.8 39 9-47 385-423 (1706)
327 3zvl_A Bifunctional polynucleo 95.1 0.09 3.1E-06 41.7 8.1 35 6-45 257-291 (416)
328 2qtf_A Protein HFLX, GTP-bindi 95.1 0.12 4.1E-06 40.3 8.6 22 6-28 179-200 (364)
329 2c95_A Adenylate kinase 1; tra 95.1 0.017 6E-07 40.3 3.5 33 6-44 9-41 (196)
330 3be4_A Adenylate kinase; malar 95.0 0.016 5.4E-07 41.6 3.2 34 4-43 3-36 (217)
331 2orv_A Thymidine kinase; TP4A 95.0 0.041 1.4E-06 40.1 5.3 39 5-44 18-56 (234)
332 3cr8_A Sulfate adenylyltranfer 95.0 0.02 6.9E-07 47.1 4.2 41 5-46 368-409 (552)
333 3jvv_A Twitching mobility prot 95.0 0.25 8.6E-06 38.3 10.1 36 6-42 123-159 (356)
334 3e1s_A Exodeoxyribonuclease V, 95.0 0.032 1.1E-06 46.2 5.3 33 9-41 206-238 (574)
335 2cdn_A Adenylate kinase; phosp 95.0 0.019 6.6E-07 40.5 3.5 32 7-44 21-52 (201)
336 2qpt_A EH domain-containing pr 94.8 0.044 1.5E-06 45.1 5.7 67 119-187 155-231 (550)
337 3syl_A Protein CBBX; photosynt 94.8 0.042 1.4E-06 41.3 5.2 37 7-44 68-108 (309)
338 2qby_A CDC6 homolog 1, cell di 94.8 0.021 7.1E-07 44.2 3.6 38 6-44 45-85 (386)
339 3exa_A TRNA delta(2)-isopenten 94.8 0.027 9.2E-07 43.0 4.0 34 8-46 4-37 (322)
340 4a74_A DNA repair and recombin 94.8 0.035 1.2E-06 39.7 4.5 39 6-45 25-69 (231)
341 2bwj_A Adenylate kinase 5; pho 94.8 0.019 6.4E-07 40.2 3.0 32 7-44 13-44 (199)
342 1ltq_A Polynucleotide kinase; 94.8 0.021 7.2E-07 42.9 3.4 34 7-44 2-35 (301)
343 2v1u_A Cell division control p 94.8 0.024 8.3E-07 43.9 3.8 37 9-45 46-88 (387)
344 2z4s_A Chromosomal replication 94.8 0.03 1E-06 44.8 4.4 37 7-44 131-169 (440)
345 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.011 3.9E-07 45.2 1.7 32 10-44 126-157 (331)
346 2chg_A Replication factor C sm 94.6 0.019 6.4E-07 40.6 2.7 35 10-44 41-75 (226)
347 3cmu_A Protein RECA, recombina 94.6 0.044 1.5E-06 51.5 5.6 39 9-47 385-423 (2050)
348 1pzn_A RAD51, DNA repair and r 94.6 0.041 1.4E-06 42.6 4.8 39 6-45 131-175 (349)
349 1bif_A 6-phosphofructo-2-kinas 94.6 0.046 1.6E-06 44.1 5.1 39 6-44 38-76 (469)
350 2jaq_A Deoxyguanosine kinase; 94.6 0.03 1E-06 39.3 3.6 24 8-32 2-25 (205)
351 3lda_A DNA repair protein RAD5 94.5 0.034 1.2E-06 44.0 4.2 38 7-45 179-222 (400)
352 2bjv_A PSP operon transcriptio 94.5 0.028 9.4E-07 41.5 3.5 37 9-46 32-68 (265)
353 3t15_A Ribulose bisphosphate c 94.5 0.026 9E-07 42.5 3.4 35 6-44 36-70 (293)
354 1w5s_A Origin recognition comp 94.5 0.042 1.4E-06 43.0 4.7 38 8-45 51-96 (412)
355 1ak2_A Adenylate kinase isoenz 94.5 0.035 1.2E-06 40.2 3.9 34 5-44 15-48 (233)
356 1fnn_A CDC6P, cell division co 94.5 0.066 2.3E-06 41.5 5.7 38 8-46 46-84 (389)
357 2bbw_A Adenylate kinase 4, AK4 94.5 0.034 1.2E-06 40.6 3.8 25 6-31 27-51 (246)
358 4e22_A Cytidylate kinase; P-lo 94.4 0.032 1.1E-06 41.1 3.6 26 5-31 26-51 (252)
359 1zd8_A GTP:AMP phosphotransfer 94.4 0.017 5.8E-07 41.7 2.1 33 6-44 7-39 (227)
360 3orf_A Dihydropteridine reduct 94.4 0.044 1.5E-06 40.1 4.3 39 3-46 19-57 (251)
361 2pt5_A Shikimate kinase, SK; a 94.4 0.036 1.2E-06 37.7 3.7 32 8-45 2-33 (168)
362 2a5y_B CED-4; apoptosis; HET: 94.4 0.039 1.3E-06 45.3 4.4 39 5-44 151-193 (549)
363 3upu_A ATP-dependent DNA helic 94.4 0.059 2E-06 43.3 5.3 33 9-41 47-80 (459)
364 3zvr_A Dynamin-1; hydrolase, D 94.3 0.082 2.8E-06 45.2 6.3 70 117-187 149-230 (772)
365 3cm0_A Adenylate kinase; ATP-b 94.3 0.048 1.6E-06 37.7 4.2 33 6-44 4-36 (186)
366 1zak_A Adenylate kinase; ATP:A 94.3 0.028 9.7E-07 40.3 3.0 27 5-32 4-30 (222)
367 3cmu_A Protein RECA, recombina 94.3 0.048 1.6E-06 51.3 5.0 39 9-47 734-772 (2050)
368 3ch4_B Pmkase, phosphomevalona 94.2 0.056 1.9E-06 38.5 4.3 28 3-31 8-35 (202)
369 4ag6_A VIRB4 ATPase, type IV s 94.2 0.065 2.2E-06 42.0 5.1 37 8-45 37-73 (392)
370 3a8t_A Adenylate isopentenyltr 94.1 0.038 1.3E-06 42.6 3.6 34 7-46 41-74 (339)
371 3llu_A RAS-related GTP-binding 94.0 0.2 6.8E-06 34.8 7.0 65 116-186 67-141 (196)
372 3ged_A Short-chain dehydrogena 94.0 0.052 1.8E-06 39.9 4.0 35 6-45 2-36 (247)
373 3umf_A Adenylate kinase; rossm 94.0 0.063 2.2E-06 38.7 4.3 27 4-31 27-53 (217)
374 1xwi_A SKD1 protein; VPS4B, AA 94.0 0.74 2.5E-05 35.0 10.6 36 6-44 45-80 (322)
375 2eyu_A Twitching motility prot 94.0 0.12 4.3E-06 38.2 6.0 39 5-44 24-63 (261)
376 3tau_A Guanylate kinase, GMP k 93.9 0.035 1.2E-06 39.5 2.8 26 5-31 7-32 (208)
377 1jwy_B Dynamin A GTPase domain 93.9 0.073 2.5E-06 40.2 4.8 68 117-187 130-211 (315)
378 1c9k_A COBU, adenosylcobinamid 93.8 0.034 1.2E-06 38.9 2.6 32 9-45 2-33 (180)
379 2j41_A Guanylate kinase; GMP, 93.7 0.036 1.2E-06 39.0 2.7 26 5-31 5-30 (207)
380 2qz4_A Paraplegin; AAA+, SPG7, 93.7 0.12 3.9E-06 37.8 5.4 35 7-45 40-74 (262)
381 2ewv_A Twitching motility prot 93.7 0.13 4.4E-06 40.2 5.8 38 5-43 135-173 (372)
382 2d1y_A Hypothetical protein TT 93.6 0.085 2.9E-06 38.6 4.6 41 1-46 1-41 (256)
383 1w78_A FOLC bifunctional prote 93.6 0.14 4.8E-06 40.6 6.0 35 4-41 47-81 (422)
384 4dcu_A GTP-binding protein ENG 93.5 0.076 2.6E-06 42.6 4.5 67 118-187 243-319 (456)
385 3tpc_A Short chain alcohol deh 93.5 0.092 3.1E-06 38.5 4.6 40 2-46 3-42 (257)
386 3tlx_A Adenylate kinase 2; str 93.5 0.075 2.6E-06 38.8 4.1 34 5-44 28-61 (243)
387 3pxx_A Carveol dehydrogenase; 93.5 0.088 3E-06 39.1 4.5 41 1-46 5-45 (287)
388 1kgd_A CASK, peripheral plasma 93.4 0.07 2.4E-06 36.9 3.6 26 6-32 5-30 (180)
389 3qq5_A Small GTP-binding prote 93.4 0.2 6.7E-06 39.9 6.5 64 119-187 84-153 (423)
390 1w4r_A Thymidine kinase; type 93.4 0.14 4.8E-06 36.2 5.1 40 4-44 18-57 (195)
391 1kk1_A EIF2gamma; initiation o 93.4 0.13 4.4E-06 40.7 5.5 67 118-187 83-150 (410)
392 1tf7_A KAIC; homohexamer, hexa 93.3 0.11 3.6E-06 42.6 5.1 38 7-45 282-319 (525)
393 2ehd_A Oxidoreductase, oxidore 93.3 0.068 2.3E-06 38.4 3.6 37 3-44 2-38 (234)
394 4e6p_A Probable sorbitol dehyd 93.3 0.093 3.2E-06 38.5 4.3 37 4-45 6-42 (259)
395 1nij_A Hypothetical protein YJ 93.3 0.062 2.1E-06 41.0 3.4 39 5-46 3-41 (318)
396 3un1_A Probable oxidoreductase 93.3 0.047 1.6E-06 40.3 2.7 39 3-46 25-63 (260)
397 4bas_A ADP-ribosylation factor 93.3 0.1 3.5E-06 36.2 4.4 68 116-187 61-140 (199)
398 4b3f_X DNA-binding protein smu 93.2 0.12 4E-06 43.4 5.3 34 9-42 207-240 (646)
399 3pk0_A Short-chain dehydrogena 93.2 0.08 2.8E-06 39.0 3.8 40 1-45 5-44 (262)
400 1ofh_A ATP-dependent HSL prote 93.2 0.12 4.1E-06 38.7 4.8 36 7-46 51-86 (310)
401 2hxs_A RAB-26, RAS-related pro 93.1 0.2 6.9E-06 33.9 5.6 65 117-186 55-127 (178)
402 3eie_A Vacuolar protein sortin 93.1 0.55 1.9E-05 35.6 8.5 35 6-44 51-85 (322)
403 2xb4_A Adenylate kinase; ATP-b 93.1 0.12 4.1E-06 37.1 4.5 28 11-43 4-31 (223)
404 3hdt_A Putative kinase; struct 93.0 0.094 3.2E-06 37.9 3.9 33 7-45 15-47 (223)
405 3uce_A Dehydrogenase; rossmann 93.0 0.049 1.7E-06 39.1 2.4 41 1-46 1-41 (223)
406 3eph_A TRNA isopentenyltransfe 93.0 0.14 4.7E-06 40.5 5.1 32 9-45 4-35 (409)
407 3eag_A UDP-N-acetylmuramate:L- 93.0 0.13 4.5E-06 39.3 4.9 33 5-40 107-139 (326)
408 3u61_B DNA polymerase accessor 93.0 0.083 2.8E-06 40.1 3.8 35 7-44 48-82 (324)
409 3op4_A 3-oxoacyl-[acyl-carrier 93.0 0.1 3.5E-06 38.1 4.1 37 3-44 6-42 (248)
410 3guy_A Short-chain dehydrogena 93.0 0.074 2.5E-06 38.3 3.3 35 6-45 1-35 (230)
411 3rih_A Short chain dehydrogena 93.0 0.089 3E-06 39.6 3.8 39 2-45 37-75 (293)
412 3t34_A Dynamin-related protein 92.9 0.24 8.3E-06 38.3 6.4 68 117-187 135-216 (360)
413 1lv7_A FTSH; alpha/beta domain 92.9 0.16 5.6E-06 37.1 5.2 35 6-44 45-79 (257)
414 3gem_A Short chain dehydrogena 92.9 0.068 2.3E-06 39.4 3.1 38 3-45 24-61 (260)
415 3tr0_A Guanylate kinase, GMP k 92.9 0.095 3.3E-06 36.8 3.8 25 6-31 7-31 (205)
416 3r20_A Cytidylate kinase; stru 92.8 0.076 2.6E-06 38.7 3.2 33 7-45 10-42 (233)
417 3llv_A Exopolyphosphatase-rela 92.8 0.13 4.6E-06 33.8 4.2 40 1-46 1-40 (141)
418 2x2e_A Dynamin-1; nitration, h 92.8 0.35 1.2E-05 37.3 7.1 70 117-187 129-210 (353)
419 3nwj_A ATSK2; P loop, shikimat 92.8 0.078 2.7E-06 39.1 3.2 33 6-44 48-80 (250)
420 2i3b_A HCR-ntpase, human cance 92.8 0.1 3.5E-06 36.7 3.7 27 8-35 3-29 (189)
421 3v8b_A Putative dehydrogenase, 92.8 0.11 3.7E-06 38.8 4.1 39 1-44 23-61 (283)
422 1e4v_A Adenylate kinase; trans 92.8 0.079 2.7E-06 37.7 3.2 29 9-43 3-31 (214)
423 1jbw_A Folylpolyglutamate synt 92.7 0.15 5.3E-06 40.4 5.1 34 5-41 38-71 (428)
424 4eso_A Putative oxidoreductase 92.7 0.13 4.3E-06 37.8 4.3 35 5-44 7-41 (255)
425 3izq_1 HBS1P, elongation facto 92.7 0.15 5.2E-06 42.5 5.2 69 116-187 243-318 (611)
426 1n0u_A EF-2, elongation factor 92.7 0.18 6.2E-06 43.7 5.9 65 116-186 96-162 (842)
427 3grp_A 3-oxoacyl-(acyl carrier 92.7 0.11 3.9E-06 38.3 4.1 39 1-44 22-60 (266)
428 4da9_A Short-chain dehydrogena 92.7 0.13 4.5E-06 38.3 4.4 35 4-43 27-61 (280)
429 2qor_A Guanylate kinase; phosp 92.7 0.048 1.6E-06 38.6 1.9 24 7-31 13-36 (204)
430 2wsb_A Galactitol dehydrogenas 92.7 0.13 4.5E-06 37.3 4.4 35 5-44 10-44 (254)
431 3ioy_A Short-chain dehydrogena 92.6 0.17 5.8E-06 38.5 5.1 37 4-45 6-42 (319)
432 3tqf_A HPR(Ser) kinase; transf 92.6 0.12 4.1E-06 36.0 3.8 27 7-38 17-43 (181)
433 3fb4_A Adenylate kinase; psych 92.6 0.1 3.5E-06 37.0 3.7 30 9-44 3-32 (216)
434 3dii_A Short-chain dehydrogena 92.6 0.11 3.9E-06 37.8 4.0 35 6-45 2-36 (247)
435 3l6e_A Oxidoreductase, short-c 92.6 0.12 4E-06 37.5 4.0 34 6-44 3-36 (235)
436 3oec_A Carveol dehydrogenase ( 92.6 0.17 5.8E-06 38.4 5.0 39 5-48 45-83 (317)
437 3s55_A Putative short-chain de 92.5 0.13 4.4E-06 38.2 4.2 40 2-46 6-45 (281)
438 2bdt_A BH3686; alpha-beta prot 92.5 0.12 4.2E-06 35.8 3.9 33 7-44 3-35 (189)
439 3v2h_A D-beta-hydroxybutyrate 92.5 0.11 3.8E-06 38.7 3.8 37 3-44 22-58 (281)
440 1d2n_A N-ethylmaleimide-sensit 92.5 0.22 7.5E-06 36.7 5.4 34 6-43 64-97 (272)
441 1w36_D RECD, exodeoxyribonucle 92.4 0.16 5.5E-06 42.3 5.0 34 8-41 165-202 (608)
442 1e8c_A UDP-N-acetylmuramoylala 92.4 0.2 7E-06 40.6 5.5 34 5-41 107-140 (498)
443 1fjh_A 3alpha-hydroxysteroid d 92.4 0.14 4.6E-06 37.4 4.1 36 6-46 1-36 (257)
444 2h57_A ADP-ribosylation factor 92.4 0.24 8.1E-06 34.1 5.2 67 117-187 66-139 (190)
445 3vtz_A Glucose 1-dehydrogenase 92.4 0.13 4.3E-06 38.1 4.0 39 3-46 11-49 (269)
446 3uxy_A Short-chain dehydrogena 92.4 0.09 3.1E-06 38.9 3.1 38 4-46 26-63 (266)
447 3p19_A BFPVVD8, putative blue 92.3 0.13 4.4E-06 38.1 3.9 35 5-44 15-49 (266)
448 1ojl_A Transcriptional regulat 92.3 0.072 2.4E-06 40.4 2.6 37 9-46 28-64 (304)
449 2rhc_B Actinorhodin polyketide 92.3 0.16 5.4E-06 37.7 4.5 36 5-45 21-56 (277)
450 3c5c_A RAS-like protein 12; GD 92.3 0.22 7.7E-06 34.3 5.0 66 116-186 67-139 (187)
451 3ney_A 55 kDa erythrocyte memb 92.3 0.11 3.6E-06 36.9 3.3 24 8-31 20-43 (197)
452 3ppi_A 3-hydroxyacyl-COA dehyd 92.3 0.15 5E-06 37.9 4.3 37 4-45 28-64 (281)
453 2ocp_A DGK, deoxyguanosine kin 92.3 0.089 3.1E-06 38.2 3.0 26 6-32 2-27 (241)
454 3m1a_A Putative dehydrogenase; 92.3 0.096 3.3E-06 38.8 3.3 37 4-45 3-39 (281)
455 3r6d_A NAD-dependent epimerase 92.3 0.15 5E-06 36.3 4.1 37 4-45 3-40 (221)
456 1s0u_A EIF-2-gamma, translatio 92.3 0.18 6.1E-06 39.8 4.9 67 118-187 81-148 (408)
457 2wtz_A UDP-N-acetylmuramoyl-L- 92.3 0.21 7.3E-06 40.9 5.5 34 5-41 145-178 (535)
458 3te6_A Regulatory protein SIR3 92.3 0.2 6.9E-06 38.2 5.0 40 5-45 44-90 (318)
459 3h4m_A Proteasome-activating n 92.3 0.2 6.8E-06 37.1 5.0 35 6-44 51-85 (285)
460 4dyv_A Short-chain dehydrogena 92.2 0.1 3.4E-06 38.8 3.2 36 4-44 26-61 (272)
461 3b1v_A Ferrous iron uptake tra 92.2 0.44 1.5E-05 35.4 6.7 67 117-186 48-119 (272)
462 3nyw_A Putative oxidoreductase 92.2 0.12 4.1E-06 37.8 3.6 38 3-45 4-41 (250)
463 3nrs_A Dihydrofolate:folylpoly 92.2 0.27 9.2E-06 39.2 5.9 36 3-41 49-84 (437)
464 1q3t_A Cytidylate kinase; nucl 92.2 0.14 4.9E-06 37.0 4.0 35 5-45 15-49 (236)
465 2ekp_A 2-deoxy-D-gluconate 3-d 92.2 0.15 5.1E-06 36.9 4.1 36 6-46 2-37 (239)
466 1sxj_A Activator 1 95 kDa subu 92.2 0.14 4.9E-06 41.7 4.3 35 7-45 78-112 (516)
467 2vp4_A Deoxynucleoside kinase; 92.1 0.11 3.6E-06 37.6 3.2 36 4-44 18-53 (230)
468 3qiv_A Short-chain dehydrogena 92.1 0.17 5.7E-06 36.9 4.3 36 4-44 7-42 (253)
469 2qmh_A HPR kinase/phosphorylas 92.1 0.22 7.6E-06 35.4 4.7 32 6-44 34-65 (205)
470 3tzq_B Short-chain type dehydr 92.1 0.2 6.7E-06 37.1 4.7 36 5-45 10-45 (271)
471 4fgs_A Probable dehydrogenase 92.1 0.16 5.6E-06 37.9 4.3 35 5-44 28-62 (273)
472 1lvg_A Guanylate kinase, GMP k 92.1 0.1 3.5E-06 36.8 3.0 26 6-32 4-29 (198)
473 3rwb_A TPLDH, pyridoxal 4-dehy 92.1 0.16 5.5E-06 37.0 4.2 36 4-44 4-39 (247)
474 2aka_B Dynamin-1; fusion prote 92.1 0.55 1.9E-05 34.9 7.3 69 117-187 124-205 (299)
475 1zmt_A Haloalcohol dehalogenas 92.1 0.11 3.9E-06 37.9 3.4 35 6-45 1-35 (254)
476 3l77_A Short-chain alcohol deh 92.1 0.16 5.4E-06 36.5 4.1 34 6-44 2-35 (235)
477 3h7a_A Short chain dehydrogena 92.1 0.17 5.8E-06 37.0 4.3 37 4-45 5-41 (252)
478 1r5b_A Eukaryotic peptide chai 92.0 0.13 4.4E-06 41.5 3.9 68 116-186 119-193 (467)
479 2pd4_A Enoyl-[acyl-carrier-pro 92.0 0.23 7.9E-06 36.7 5.0 37 4-45 4-42 (275)
480 3tmk_A Thymidylate kinase; pho 92.0 0.15 5.2E-06 36.6 3.9 27 6-33 5-31 (216)
481 2fwm_X 2,3-dihydro-2,3-dihydro 92.0 0.21 7.1E-06 36.4 4.7 36 5-45 6-41 (250)
482 3rd5_A Mypaa.01249.C; ssgcid, 92.0 0.19 6.6E-06 37.5 4.6 38 3-45 13-50 (291)
483 1ye8_A Protein THEP1, hypothet 92.0 0.14 4.9E-06 35.5 3.6 24 8-32 2-25 (178)
484 2fna_A Conserved hypothetical 92.0 0.19 6.6E-06 38.2 4.7 34 9-45 32-65 (357)
485 3fdi_A Uncharacterized protein 92.0 0.077 2.6E-06 37.6 2.3 32 8-44 7-38 (201)
486 1spx_A Short-chain reductase f 92.0 0.13 4.5E-06 38.0 3.7 39 1-44 1-39 (278)
487 2npi_A Protein CLP1; CLP1-PCF1 92.0 0.081 2.8E-06 42.6 2.6 41 5-46 137-178 (460)
488 3rkr_A Short chain oxidoreduct 92.0 0.15 5E-06 37.5 3.9 38 3-45 26-63 (262)
489 2h17_A ADP-ribosylation factor 92.0 0.17 5.9E-06 34.6 4.1 67 117-187 64-135 (181)
490 1htw_A HI0065; nucleotide-bind 91.9 0.16 5.4E-06 34.6 3.7 26 5-31 32-57 (158)
491 1z6t_A APAF-1, apoptotic prote 91.9 0.13 4.6E-06 42.3 3.9 41 5-46 146-190 (591)
492 2v9p_A Replication protein E1; 91.9 0.17 5.7E-06 38.4 4.1 26 5-31 125-150 (305)
493 3o26_A Salutaridine reductase; 91.9 0.13 4.4E-06 38.5 3.5 36 5-45 11-46 (311)
494 3lyl_A 3-oxoacyl-(acyl-carrier 91.8 0.16 5.6E-06 36.8 4.0 36 5-45 4-39 (247)
495 1dhr_A Dihydropteridine reduct 91.8 0.19 6.4E-06 36.4 4.3 37 5-46 6-42 (241)
496 3d8b_A Fidgetin-like protein 1 91.8 0.23 7.8E-06 38.4 4.9 36 5-44 116-151 (357)
497 3ak4_A NADH-dependent quinucli 91.8 0.2 6.9E-06 36.7 4.5 36 5-45 11-46 (263)
498 1um8_A ATP-dependent CLP prote 91.8 0.18 6.1E-06 39.2 4.3 36 7-46 73-108 (376)
499 1o5z_A Folylpolyglutamate synt 91.8 0.22 7.4E-06 39.8 4.9 34 5-41 51-84 (442)
500 3ic5_A Putative saccharopine d 91.8 0.21 7.3E-06 31.4 4.0 36 4-45 3-39 (118)
No 1
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=100.00 E-value=4.5e-33 Score=210.32 Aligned_cols=185 Identities=45% Similarity=0.783 Sum_probs=144.0
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
++++++|+|+|+|||+||||+|+|||..|+++|+||++||+|++.+++..+++.+...+......+.+.. ...++++++
T Consensus 15 ~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~vl 93 (262)
T 2ph1_A 15 GKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVL-TQKYGIKVM 93 (262)
T ss_dssp TTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEE-CTTTCCEEE
T ss_pred ccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccc-cCCCCeEEE
Confidence 5678999999999999999999999999999999999999999988888888877554221111222222 245789999
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDV 162 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~ 162 (192)
+.+.....+.....+..+.....++++++.++++.|||||||+||+........+... .+|.+++|+.++..++..+
T Consensus 94 p~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~---~aD~viiv~~~~~~s~~~~ 170 (262)
T 2ph1_A 94 SMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDA---KPTGVVVVSTPQELTAVIV 170 (262)
T ss_dssp CGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHH---CCSEEEEEECSSSCCHHHH
T ss_pred eccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhc---cCCeEEEEecCccchHHHH
Confidence 8876655444433334445567788888877546899999999999876543333321 3899999999999999999
Q ss_pred HHHHHHhHhcCCceeeEEeccCccCCCCC
Q psy9977 163 RKEITFCKKTNIKILGLIENMSGYTCPHC 191 (192)
Q Consensus 163 ~~~~~~l~~~~~~~~g~v~N~~~~~~~~~ 191 (192)
.++++.+++.+.++.|+|+|+++..|+.|
T Consensus 171 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~ 199 (262)
T 2ph1_A 171 EKAINMAEETNTSVLGLVENMSYFVCPNC 199 (262)
T ss_dssp HHHHHHHHTTTCCEEEEEETTCCEECTTT
T ss_pred HHHHHHHHhCCCCEEEEEECCCccCCccc
Confidence 99999999889999999999998776654
No 2
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.98 E-value=4.8e-32 Score=206.63 Aligned_cols=174 Identities=16% Similarity=0.246 Sum_probs=143.1
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccc---cCCCCccc-ccCCC
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQ---CPEGWVPV-YTDAS 76 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~---~~~~~~~~-~~~~~ 76 (192)
.++.+++|+|+|++||+||||+|+|||..||+.|+||++||+|++.++++.+|+.+... +.+ ....+.+. .....
T Consensus 88 ~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~ 167 (286)
T 3la6_A 88 MQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSI 167 (286)
T ss_dssp TTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSS
T ss_pred cCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCC
Confidence 45678999999999999999999999999999999999999999999999999887653 211 12233333 33456
Q ss_pred CceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc
Q psy9977 77 QTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
+++++++.+..+.++.+.+ ....+.++++.++ +.||+||||+||.........+.. .+|.+++|+.++.
T Consensus 168 ~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~l~~----~aD~vllVv~~~~ 236 (286)
T 3la6_A 168 AKFDLIPRGQVPPNPSELL------MSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIVGR----HVGTTLMVARYAV 236 (286)
T ss_dssp TTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHHHTT----TCSEEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHh------chHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHHHHHH----HCCeEEEEEeCCC
Confidence 8999999887666543322 3467888888888 799999999999987765556655 4999999999999
Q ss_pred ccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 157 VSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+...+.+.++.+++.+.++.|+|+|+++.
T Consensus 237 ~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 237 NTLKEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp SBHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 999999999999999999999999999875
No 3
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.97 E-value=1.4e-31 Score=202.84 Aligned_cols=173 Identities=22% Similarity=0.358 Sum_probs=139.0
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccC---CCCcccc-cCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCP---EGWVPVY-TDASQ 77 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~ 77 (192)
++.+++|+|+|++||+||||+|+|||..||+.|+||++||+|++.++++.+|+.+... +.+.. ..+.+.+ ....+
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~ 158 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIE 158 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSST
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCC
Confidence 4678999999999999999999999999999999999999999999998888876542 22221 2222322 33358
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.+..+.++.+.. ....+.++++.++ ++||+||||+||.........+.. .+|.+++|+.++..
T Consensus 159 ~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~~----~aD~vilVv~~~~~ 227 (271)
T 3bfv_A 159 DLDVLTSGPIPPNPSELI------TSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFSK----FTGNVVYVVNSENN 227 (271)
T ss_dssp TEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHHHH----HHCEEEEEEETTSC
T ss_pred CEEEEECCCCCCCHHHHh------ChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHHHH----HCCEEEEEEeCCCC
Confidence 999999887665543321 2356778888887 799999999999876655555554 39999999999999
Q ss_pred cHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 158 SIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+...+.+.++.+++.+.++.|+|+|+++.
T Consensus 228 ~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 228 NKDEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 99999999999999999999999999874
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.97 E-value=8.9e-31 Score=201.00 Aligned_cols=175 Identities=19% Similarity=0.234 Sum_probs=139.9
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccC---CCCcccc-cCCC
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCP---EGWVPVY-TDAS 76 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~-~~~~ 76 (192)
.++.+++|+|+|++||+||||+|+|||..|++.|+||++||+|+++++++.+|+..... +.+.. ..+.+.+ ....
T Consensus 100 ~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~ 179 (299)
T 3cio_A 100 METENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGK 179 (299)
T ss_dssp SSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETT
T ss_pred cCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCC
Confidence 35678999999999999999999999999999999999999999989999999876542 22221 2222222 2245
Q ss_pred CceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCc
Q psy9977 77 QTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQA 156 (192)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~ 156 (192)
+++++++.+..+.++.+.. ....+.++++.++ ++||+||||+||.........+.. .+|.+++|+.++.
T Consensus 180 ~~l~vl~~g~~~~~~~ell------~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~~----~ad~vilV~~~~~ 248 (299)
T 3cio_A 180 GGFDVITRGQVPPNPSELL------MRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGR----SVGTSLLVARFGL 248 (299)
T ss_dssp TTEEEECCCSCCSCHHHHH------TSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHHHGG----GCSEEEEEEETTT
T ss_pred CCEEEEECCCCCCCHHHHh------CHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHHHHHH----HCCEEEEEEcCCC
Confidence 8999999887665543221 2356788888887 799999999999887555445554 4999999999999
Q ss_pred ccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 157 VSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 157 ~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+...+.+.++.+++.+.++.|+|+|+++..
T Consensus 249 ~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 249 NTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp SCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 9999999999999999999999999998753
No 5
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.97 E-value=1.1e-30 Score=195.03 Aligned_cols=171 Identities=21% Similarity=0.277 Sum_probs=131.2
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCCCCCCcccC-CCCCC-ccccCCCC---c-----cc
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCGPSVPHLLN-IENSD-VHQCPEGW---V-----PV 71 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~~~~~~~~~-~~~~~-~~~~~~~~---~-----~~ 71 (192)
++++++|+|+|+|||+||||+|++||..|+++ |+||++||+|++.+++..+|+ .++.. +.+..... . ..
T Consensus 1 s~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (245)
T 3ea0_A 1 SNAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTM 80 (245)
T ss_dssp --CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHH
Confidence 36789999999999999999999999999998 999999999999888998884 32221 11111110 1 12
Q ss_pred ccCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEe
Q psy9977 72 YTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLV 151 (192)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv 151 (192)
.....+++++++.+........ ...+.++++++.++ +.||+||||+||+........+.. +|.+++|
T Consensus 81 ~~~~~~~l~~l~~~~~~~~~~~-------~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~-----ad~viiv 147 (245)
T 3ea0_A 81 VQHISPSLDLIPSPATFEKIVN-------IEPERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWVLEH-----LDELCIV 147 (245)
T ss_dssp SEEEETTEEEECCCSSHHHHHH-------CCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHHGGG-----CSEEEEE
T ss_pred hEecCCCeEEEcCCCChHhhhc-------CCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHHHHH-----CCEEEEE
Confidence 2344678999987543322111 22456888888887 699999999999987766555554 9999999
Q ss_pred cCCCcccHHHHHHHHHHhHhcC--CceeeEEeccCcc
Q psy9977 152 TTPQAVSIEDVRKEITFCKKTN--IKILGLIENMSGY 186 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~--~~~~g~v~N~~~~ 186 (192)
+.++..++..+.++++.+++.+ .+..++|+|+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 148 TTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred ecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 9999999999999999999776 5679999999875
No 6
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.97 E-value=1.6e-29 Score=188.01 Aligned_cols=170 Identities=25% Similarity=0.401 Sum_probs=131.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC--Ccccc---CCCCcccccCC-CCc
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS--DVHQC---PEGWVPVYTDA-SQT 78 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-~~~ 78 (192)
|+++|+|+|+|||+||||+|++||..|+++|+||++||+|++++++..+|+.+.. .+.+. ...+.+.+... ..+
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 3689999999999999999999999999999999999999988899999988765 22221 12222322222 378
Q ss_pred eEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCccc
Q psy9977 79 LAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
+++++... .... ... ...+.+.++++.++ +.||+||||+||+........+.. +|.+++|+.++..+
T Consensus 81 l~~lp~~~-~~~~---~~~---~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~~-----ad~vi~v~~~~~~~ 147 (237)
T 1g3q_A 81 VYVLPGAV-DWEH---VLK---ADPRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSAMLS-----GEEALLVTNPEISC 147 (237)
T ss_dssp EEEECCCC-SHHH---HHH---CCGGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHHHTT-----CSEEEEEECSCHHH
T ss_pred EEEEeCCC-ccch---hhh---cCHHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHHHHH-----CCeEEEEecCCccc
Confidence 88887321 1110 000 01345778888887 799999999999988665555544 99999999999999
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+..+.++++.+++.+.+..|+|+|+++..
T Consensus 148 ~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 148 LTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 99999999999988889999999998764
No 7
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.96 E-value=2.7e-29 Score=189.52 Aligned_cols=169 Identities=22% Similarity=0.376 Sum_probs=132.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC--Ccccc---CCCCcccccCCCCce
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS--DVHQC---PEGWVPVYTDASQTL 79 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~l 79 (192)
|+++|+|+|+|||+||||+|++||..|+++|+||++||+|+++++++.+|+.+.. .+.+. .....+.+.....++
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l 80 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGV 80 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGC
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCe
Confidence 3689999999999999999999999999999999999999988899999987764 12111 122223333335788
Q ss_pred EEEeeccccccCCcccccCCchh-HHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCccc
Q psy9977 80 AVMSIGFLLKNRDDAIIWRGPKK-TAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
++++... .... . ... ...+.++++.++ +.||+||||+||+........+.. +|.+++|+.++..+
T Consensus 81 ~~lp~~~-~~~~---~----~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~~-----ad~vi~v~~~~~~~ 146 (263)
T 1hyq_A 81 KVVPAGV-SLEG---L----RKANPEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIAIAA-----AQELLLVVNPEISS 146 (263)
T ss_dssp EEEECCS-CHHH---H----HHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHHHHH-----SSEEEEEECSSHHH
T ss_pred EEEcCCC-CcCh---h----hccChHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHHHHH-----CCEEEEEeCCChhH
Confidence 8887321 1110 0 011 456778888887 799999999999998666556655 99999999999999
Q ss_pred HHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+..+.++++.+++.+.+..++|+|+++..
T Consensus 147 ~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 147 ITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 99999999999988889999999998753
No 8
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.96 E-value=3.1e-29 Score=188.77 Aligned_cols=168 Identities=20% Similarity=0.325 Sum_probs=131.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---cccc---CCCCccccc--CCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---VHQC---PEGWVPVYT--DAS 76 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~--~~~ 76 (192)
++++|+|+|+|||+||||+|++||..|+++|+||++||+|++++++..++|.+... +.+. ...+.+... ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 47999999999999999999999999999999999999999889999999876542 1111 112222222 235
Q ss_pred CceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCC-CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC
Q psy9977 77 QTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWK-DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ 155 (192)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~ 155 (192)
+++++++.+.... ........+.++++.++ . .||+||||+||+........+.. +|.+++|+.++
T Consensus 81 ~~l~~lp~~~~~~--------~~~~~~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~l~~-----ad~vi~v~~~~ 146 (260)
T 3q9l_A 81 ENLYILPASQTRD--------KDALTREGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMALYF-----ADEAIITTNPE 146 (260)
T ss_dssp TTEEEECCCSCCC--------TTSSCHHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHHHHT-----CSEEEEEECSS
T ss_pred CCEEEecCCCccc--------hhhCCHHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHHHHh-----CCEEEEEecCC
Confidence 7999998764421 11234566888888887 6 89999999999998766555555 99999999999
Q ss_pred cccHHHHHHHHHHhHhcCC--------ceeeEEeccCcc
Q psy9977 156 AVSIEDVRKEITFCKKTNI--------KILGLIENMSGY 186 (192)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~--------~~~g~v~N~~~~ 186 (192)
..++..+.++++.++..+. ...++|+|+++.
T Consensus 147 ~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 147 VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 9999999999999986542 478999999864
No 9
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.96 E-value=3.2e-29 Score=197.12 Aligned_cols=176 Identities=19% Similarity=0.157 Sum_probs=126.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCC--------------------CCccc--
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN--------------------SDVHQ-- 63 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~--------------------~~~~~-- 63 (192)
||+|+|+|+|||+||||+|+|||..||++|+||++||+|++.+....+++.+. ..+.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999766555554321 11111
Q ss_pred -----cCCCCcc---cccCCCCceEEEeeccccccCCcccccC------C----chhHHHHHHHHHhhc-CCCCcEEEEe
Q psy9977 64 -----CPEGWVP---VYTDASQTLAVMSIGFLLKNRDDAIIWR------G----PKKTAMIRQIINDVC-WKDVDYLIID 124 (192)
Q Consensus 64 -----~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~----~~~~~~l~~~l~~l~-~~~~D~IiiD 124 (192)
....+.+ .......++++++.+............. + ......++++++.++ +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 1112222 3334456999999876555432221100 0 011134777888776 1399999999
Q ss_pred CCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhc--------------------C-----------
Q psy9977 125 TPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKT--------------------N----------- 173 (192)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~--------------------~----------- 173 (192)
+||..+......+.. +|.+|+|+.++..++..+.++++.+++. .
T Consensus 161 ~pP~l~~~~~~aL~~-----aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (361)
T 3pg5_A 161 VGPSLGPFNRTVLLG-----CDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLG 235 (361)
T ss_dssp CCSCCSHHHHHHHTT-----CSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTT
T ss_pred CCCCcCHHHHHHHHH-----CCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccccc
Confidence 999998777666665 9999999999999999999888887643 2
Q ss_pred ------CceeeEEeccCcc
Q psy9977 174 ------IKILGLIENMSGY 186 (192)
Q Consensus 174 ------~~~~g~v~N~~~~ 186 (192)
++++|+|+|+++.
T Consensus 236 g~~~~~l~~lG~v~n~~~~ 254 (361)
T 3pg5_A 236 GFDGEGLRYLGYTTLEYVK 254 (361)
T ss_dssp SSSSSCCEEEEEEECC---
T ss_pred cccccccceeeEEEEcchh
Confidence 7889999999986
No 10
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.96 E-value=3.4e-29 Score=189.50 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=128.0
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC--------CCCcc---ccCCCCcc
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE--------NSDVH---QCPEGWVP 70 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~--------~~~~~---~~~~~~~~ 70 (192)
-.+++++|+|+|+|||+||||+|++||..|+ +|+||++||+|++.+....+++.. ...+. .....+.+
T Consensus 23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (267)
T 3k9g_A 23 DNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDS 101 (267)
T ss_dssp ---CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGG
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHH
Confidence 4567899999999999999999999999999 999999999999865443332111 11111 11223333
Q ss_pred cccCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEE
Q psy9977 71 VYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVL 150 (192)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~vii 150 (192)
.+....+++++++.+.......... .......+.++++.++ +.||+||||+||+.+......+.. +|.+++
T Consensus 102 ~i~~~~~~l~~lp~~~~~~~~~~~~---~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~l~~-----aD~viv 172 (267)
T 3k9g_A 102 TIINVDNNLDLIPSYLTLHNFSEDK---IEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNALLC-----SDYVII 172 (267)
T ss_dssp GCEEEETTEEEECCCGGGGGTTTCC---CTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHHHTT-----CSEEEE
T ss_pred hhccCCCCEEEEeCChHHHHHHHhh---hhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHHHHH-----CCeEEE
Confidence 4444458999999876554432221 1123467888888888 899999999999998766556555 999999
Q ss_pred ecCCCcccHHHHHHHHHHhHhcCCc-eeeEEeccCc
Q psy9977 151 VTTPQAVSIEDVRKEITFCKKTNIK-ILGLIENMSG 185 (192)
Q Consensus 151 v~~~~~~~~~~~~~~~~~l~~~~~~-~~g~v~N~~~ 185 (192)
|+.++..++..+.++++.+++.+.+ .+++|+|++.
T Consensus 173 v~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 173 PMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp EEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred EeCCChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 9999999999999999999877543 3569999984
No 11
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.96 E-value=4.1e-29 Score=188.13 Aligned_cols=173 Identities=20% Similarity=0.299 Sum_probs=122.6
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCC--CCcccccCCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPE--GWVPVYTDASQ 77 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~ 77 (192)
|.++++++|+|+|+|||+||||+|++||..|+++|+||++||+|++ +++..+++.+... +.+... .+.+.+.. .+
T Consensus 1 m~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~-~~ 78 (257)
T 1wcv_1 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ-GNATSGLGVRAERGVYHLLQGEPLEGLVHP-VD 78 (257)
T ss_dssp ----CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT-CHHHHHTTCCCSCCHHHHHTTCCGGGTCEE-ET
T ss_pred CCCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC-cCHHHHhCCCCCCCHHHHHcCCCHHHHccc-cC
Confidence 6778899999999999999999999999999999999999999998 5677777765421 111111 22232222 57
Q ss_pred ceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc
Q psy9977 78 TLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~ 157 (192)
++++++.+.......... .... ..+.++++. +.|||||||+||.........+.. +|.+++|+.++..
T Consensus 79 ~l~vlp~~~~~~~~~~~l-~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~l~~-----aD~viiv~~~~~~ 146 (257)
T 1wcv_1 79 GFHLLPATPDLVGATVEL-AGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNALAA-----AEGVVVPVQAEYY 146 (257)
T ss_dssp TEEEECCCTTHHHHHHHH-TTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHHHHH-----CSEEEEEEESSTH
T ss_pred CEEEEeCChhHHHHHHHH-hhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHHHHH-----CCeEEEEecCchH
Confidence 888887654322110000 0000 345555543 589999999999998776666655 9999999999999
Q ss_pred cHHHHHHHHHHhHh------cCCceeeEEeccCccC
Q psy9977 158 SIEDVRKEITFCKK------TNIKILGLIENMSGYT 187 (192)
Q Consensus 158 ~~~~~~~~~~~l~~------~~~~~~g~v~N~~~~~ 187 (192)
++..+.++++.++. .++++.|+|+|+++..
T Consensus 147 s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 147 ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 99988888777763 3677789999998753
No 12
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.96 E-value=1.9e-28 Score=183.45 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=123.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCcc---------ccC-------------
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVH---------QCP------------- 65 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~---------~~~------------- 65 (192)
+|+| |+|||+||||+|+|||..|+++|+||++||+|++ ++++.+||.+..... +..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 8999999999999999999999999999999997 899999987654210 000
Q ss_pred CCCccc---ccCCCCceEE-EeeccccccCCcccccCCchhHHHHHHHHHhh-cCCCCcEEEEeCCCCCChhHHHHHHHh
Q psy9977 66 EGWVPV---YTDASQTLAV-MSIGFLLKNRDDAIIWRGPKKTAMIRQIINDV-CWKDVDYLIIDTPPGTSDEHITVMECL 140 (192)
Q Consensus 66 ~~~~~~---~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~D~IiiD~~~~~~~~~~~~l~~~ 140 (192)
.....+ ......++++ ++.+......... .......++++++.+ + ++||+||||+||+........+..
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~l~~~l~~l~~-~~yD~viiD~pp~~~~~~~~~l~~- 153 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQC----YCRENSFLGSVVSALFL-DKKEAVVMDMGAGIEHLTRGTAKA- 153 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSC----CHHHHHHHHHHHHHHHH-TCCSEEEEEECTTCTTCCHHHHTT-
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCC----CcchHHHHHHHHHHhcc-CCCCEEEEeCCCcccHHHHHHHHH-
Confidence 000000 0112345555 5544322221111 112225688888888 7 899999999999998766666654
Q ss_pred hhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 141 REVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 141 ~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+|.+++|+.++..++..+.++.+.+++.+.+.+++|+|+++.
T Consensus 154 ----aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 154 ----VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp ----CSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred ----CCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 999999999999999999999999999898889999999873
No 13
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.95 E-value=6e-28 Score=186.11 Aligned_cols=171 Identities=19% Similarity=0.149 Sum_probs=123.2
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-Ccccc---------CCCCcccc
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-DVHQC---------PEGWVPVY 72 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~ 72 (192)
.+.+++|+|+ +|||+||||+|+|||..|+++|+||++||+|++. ++...++.... .+.+. .....+.+
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~-~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i 115 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH-DSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV 115 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC-CTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC-CHHHHhCccCCCCHHHHHhhccccccCCCHHHhh
Confidence 3578999999 8999999999999999999999999999999985 45555554322 11111 12233344
Q ss_pred cCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHh--hcCCCCcEEEEeCCCCCChhHH-HHHHHhhhhcCCeEE
Q psy9977 73 TDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIIND--VCWKDVDYLIIDTPPGTSDEHI-TVMECLREVQCDGAV 149 (192)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~D~IiiD~~~~~~~~~~-~~l~~~~~~~ad~vi 149 (192)
.....++++++.+.......... .......+++.. ++ +.|||||||+|+....... ..+. .+|.++
T Consensus 116 ~~~~~~l~vlp~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~-~~yD~ViiD~p~~~~~~~~~~~l~-----~aD~vi 184 (307)
T 3end_A 116 FEGFNGVMCVEAGGPPAGTGCGG-----YVVGQTVKLLKQHHLL-DDTDVVIFDVLGDVVCGGFAAPLQ-----HADQAV 184 (307)
T ss_dssp EECGGGCEEEECCCCCSSSSCTT-----HHHHHHHHHHHHTTTT-SSCSEEEEEECCSSCCGGGGGGGG-----TCSEEE
T ss_pred ccCCCCceEEECCCcccccccch-----hhhHHHHHHHHhhhcc-ccCCEEEEeCCCccchHHHHHHHH-----HCCEEE
Confidence 45678999998775443321111 122333445554 44 7999999999998875432 2333 399999
Q ss_pred EecCCCcccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 150 LVTTPQAVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 150 iv~~~~~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
+|+.++..++..+.++++.++. .++++.|+|+||++.
T Consensus 185 iv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 185 VVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 9999999999999999999885 567788999999873
No 14
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.95 E-value=2.1e-27 Score=172.80 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=110.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
||+|+|+|+|||+||||+|.+||..|+++|+||++||+|++. ++..+++.. ..++++++.+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~-~~~~~~~~~------------------~~~~~~~~~~ 61 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM-SLTNWSKAG------------------KAAFDVFTAA 61 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHHTTS------------------CCSSEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC-CHHHHHhcC------------------CCCCcEEecC
Confidence 689999999999999999999999999999999999999884 444444322 1234555432
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKE 165 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~ 165 (192)
. ..+.++++.++ ++||+||||+||.........+.. +|.+++|+.++..+ ..+.++
T Consensus 62 ~-----------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~l~~-----ad~viiv~~~~~~~-~~~~~~ 117 (206)
T 4dzz_A 62 S-----------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAAVMV-----SDLVIIPVTPSPLD-FSAAGS 117 (206)
T ss_dssp S-----------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHHHHH-----CSEEEEEECSCTTT-HHHHHH
T ss_pred c-----------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHHHHH-----CCEEEEEecCCHHH-HHHHHH
Confidence 1 45777777777 789999999999997766666665 99999999999999 999999
Q ss_pred HHHhHhc-----CCceeeEEeccCcc
Q psy9977 166 ITFCKKT-----NIKILGLIENMSGY 186 (192)
Q Consensus 166 ~~~l~~~-----~~~~~g~v~N~~~~ 186 (192)
++.+++. +.++ ++|+|+++.
T Consensus 118 ~~~l~~~~~~~~~~~~-~vv~N~~~~ 142 (206)
T 4dzz_A 118 VVTVLEAQAYSRKVEA-RFLITRKIE 142 (206)
T ss_dssp HHHHHTTSCGGGCCEE-EEEECSBCT
T ss_pred HHHHHHHHHhCCCCcE-EEEEeccCC
Confidence 9998854 3555 999999974
No 15
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.95 E-value=1.1e-28 Score=191.54 Aligned_cols=187 Identities=23% Similarity=0.294 Sum_probs=120.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCCC-------cccc---c
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEGW-------VPVY---T 73 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~---~ 73 (192)
.|++|+|+|+|||+||||+|++||..+|++|+||++||+|+ +++++..|+.+... ........ .... .
T Consensus 12 gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~ 90 (324)
T 3zq6_A 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQ 90 (324)
T ss_dssp TBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHH
Confidence 35899999999999999999999999999999999999999 58899888875332 10000000 0000 0
Q ss_pred C-C-CCceEEEeeccccccC--CcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHH-------------
Q psy9977 74 D-A-SQTLAVMSIGFLLKNR--DDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITV------------- 136 (192)
Q Consensus 74 ~-~-~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~------------- 136 (192)
. . ......++.+...... ......++......+.++.+.+++.+||+||||+||.........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~ 170 (324)
T 3zq6_A 91 AKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMI 170 (324)
T ss_dssp HHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 0 0 0000112211100000 011122344444455555555444799999999999432111000
Q ss_pred -------------------------------------------HHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcC
Q psy9977 137 -------------------------------------------MECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTN 173 (192)
Q Consensus 137 -------------------------------------------l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~ 173 (192)
...+.+++.+.+++|+.|+..++.++.+.++.+++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~g 250 (324)
T 3zq6_A 171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYS 250 (324)
T ss_dssp HHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCC
Confidence 0112223457999999999999999999999999999
Q ss_pred CceeeEEeccCccC---CCCCC
Q psy9977 174 IKILGLIENMSGYT---CPHCK 192 (192)
Q Consensus 174 ~~~~g~v~N~~~~~---~~~~~ 192 (192)
+++.|+|+|++.+. |++|+
T Consensus 251 i~v~gvV~N~~~~~~~~~~~~~ 272 (324)
T 3zq6_A 251 IHADGVIVNQVLPEESDCEFCN 272 (324)
T ss_dssp CCEEEEEEEEECCSCCCSHHHH
T ss_pred CCccEEEEcCCccccCCChHHH
Confidence 99999999999987 77763
No 16
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.95 E-value=3.1e-28 Score=190.57 Aligned_cols=181 Identities=25% Similarity=0.325 Sum_probs=123.8
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
++.+++|+|+|+|||+||||+|++||..+|++|+||++||+|++ ++++..|+.+......... ...++...
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~--------g~~~l~~~ 92 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQEFGHEPTKVK--------GYDNLYVV 92 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHHHCSCCCSSCEECT--------TCSSEEEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCCCCCcCccccc--------cccceeee
Confidence 45789999999999999999999999999999999999999995 7888888876432111000 01122221
Q ss_pred eeccc-----------------------cc-cCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH----
Q psy9977 83 SIGFL-----------------------LK-NRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI---- 134 (192)
Q Consensus 83 ~~~~~-----------------------~~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~---- 134 (192)
..... .. ........++......+.++.+.+++.+||+||||+||.......
T Consensus 93 ~id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p 172 (349)
T 3ug7_A 93 EIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMP 172 (349)
T ss_dssp ECCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhH
Confidence 11000 00 000001123333444455555555447999999999996532110
Q ss_pred HHH------------------------------------------------------HHhhhhcCCeEEEecCCCcccHH
Q psy9977 135 TVM------------------------------------------------------ECLREVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 135 ~~l------------------------------------------------------~~~~~~~ad~viiv~~~~~~~~~ 160 (192)
..+ ..+.+++.|.+++|+.|+..++.
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~ 252 (349)
T 3ug7_A 173 EVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSIL 252 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHH
Confidence 000 01113446889999999999999
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccC---CCCCC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYT---CPHCK 192 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~---~~~~~ 192 (192)
++.+.++.+++.++++.|+|+|++.+. |++|+
T Consensus 253 e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~ 287 (349)
T 3ug7_A 253 ESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCR 287 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHH
T ss_pred HHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHH
Confidence 999999999999999999999999987 77774
No 17
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.95 E-value=5.2e-27 Score=180.09 Aligned_cols=176 Identities=19% Similarity=0.281 Sum_probs=126.5
Q ss_pred CcEEEEEEe--CCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC---CcccCCCCC--Ccccc--CCCCcccccCC
Q psy9977 5 VKHVILVLS--GKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV---PHLLNIENS--DVHQC--PEGWVPVYTDA 75 (192)
Q Consensus 5 ~~~~i~~~s--~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~---~~~~~~~~~--~~~~~--~~~~~~~~~~~ 75 (192)
+.++|+|++ +|||+||||+|++||..|+++|+||++||+|++.+.. ...++.+.. .+.+. .....+.....
T Consensus 33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 112 (298)
T 2oze_A 33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHL 112 (298)
T ss_dssp HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEES
T ss_pred CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhccc
Confidence 457889998 8999999999999999999999999999999996532 222343321 11110 01122222233
Q ss_pred CCceEEEeeccccccCCccc-ccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCC
Q psy9977 76 SQTLAVMSIGFLLKNRDDAI-IWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTP 154 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~ 154 (192)
.+++++++.+.......... .+........++++++.++ +.||+||||+||.........+.. +|.+++|+.+
T Consensus 113 ~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~l~~-----aD~viiv~~~ 186 (298)
T 2oze_A 113 TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNAIVA-----SDYVMIPLQA 186 (298)
T ss_dssp SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHHHHH-----CSEEEEEECG
T ss_pred CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHHHHH-----CCeEEEEecC
Confidence 57899998765433211000 0000122356888888887 799999999999998876666665 9999999999
Q ss_pred CcccHHHHHHHHHHhHh------cCCceeeEEeccCcc
Q psy9977 155 QAVSIEDVRKEITFCKK------TNIKILGLIENMSGY 186 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~------~~~~~~g~v~N~~~~ 186 (192)
+..++..+.++++.+++ .++++.|+|+|+++.
T Consensus 187 ~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 187 EEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 99999999998888875 378889999999875
No 18
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.94 E-value=3.5e-27 Score=183.13 Aligned_cols=182 Identities=18% Similarity=0.176 Sum_probs=114.6
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCC---C-----------C
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPE---G-----------W 68 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~---~-----------~ 68 (192)
++.+++|+|+|+|||+||||+|++||..++++|+||++||+|++ +++..+|+.+......... + .
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~-~~l~~~l~~~~~~~~~~v~~~~~L~~~~id~~~~~ 90 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA-HNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSM 90 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS-CHHHHHHTSCCCSSCEECTTCSSEEEEECCC----
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC-CChhHHhccccCCCceeecCCCCceeeecCHHHHH
Confidence 35567888999999999999999999999999999999999976 6788888754321000000 0 0
Q ss_pred cccccCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--------------
Q psy9977 69 VPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI-------------- 134 (192)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~-------------- 134 (192)
.+..............+. ...+......++......+.++.+.+++.+||+||||+||.......
T Consensus 91 ~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~~~l~~~ 169 (334)
T 3iqw_A 91 QDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKV 169 (334)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC-------
T ss_pred HHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000 00011111124444445556665555557999999999993211000
Q ss_pred ------------------------------------------HHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhc
Q psy9977 135 ------------------------------------------TVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKT 172 (192)
Q Consensus 135 ------------------------------------------~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~ 172 (192)
.....+.+++.+.+++|+.|+..++.++.+.++.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~ 249 (334)
T 3iqw_A 170 SQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANY 249 (334)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHHHHHHC
Confidence 00111224456789999999999999999999999999
Q ss_pred CCceeeEEeccCcc
Q psy9977 173 NIKILGLIENMSGY 186 (192)
Q Consensus 173 ~~~~~g~v~N~~~~ 186 (192)
|+++.|+|+|++.+
T Consensus 250 gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 250 GIDTHCIVVNQLLF 263 (334)
T ss_dssp TCCEEEEEEEEECC
T ss_pred CCCccEEEECCCcC
Confidence 99999999999985
No 19
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.94 E-value=6.9e-27 Score=176.87 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=116.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccC------CCCcccccCCCCc
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCP------EGWVPVYTDASQT 78 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~ 78 (192)
|++|+| ++|||+||||+|+|||..|+++|+||++||+|++.+....+++..... +.+.. ..+.+.+....++
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~ 79 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGG 79 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCC
Confidence 589999 689999999999999999999999999999999988776666544321 11111 1223333345678
Q ss_pred eEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH-HHHHhhhhcCCeEEEecCCCcc
Q psy9977 79 LAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT-VMECLREVQCDGAVLVTTPQAV 157 (192)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~-~l~~~~~~~ad~viiv~~~~~~ 157 (192)
+++++.+....... ...........+.+.+..++ ++|||||||+|+........ .+. ...+|.+++|+.++..
T Consensus 80 l~vl~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~-~~yD~iiiD~~~~~~~~~~~~~~~---~~~aD~viiv~~~~~~ 153 (269)
T 1cp2_A 80 IRCVESGGPEPGVG--CAGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVVCGGFAMPIR---EGKAQEIYIVASGEMM 153 (269)
T ss_dssp CEEEECCCCCTTSS--CHHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSCSTTTTHHHH---TTSCCEEEEEECSSHH
T ss_pred eeEEeCCCchhhcc--ccCcchhhHHHHHHHHHhhc-cCCCEEEEeCCchhhhhhhhhhhh---HhhCCEEEEeecCchh
Confidence 99998764322210 00000000111222333344 68999999999876443211 111 1149999999999999
Q ss_pred cHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 158 SIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 158 ~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
++..+.++++.++. .++++.|+|+|+++.
T Consensus 154 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 154 ALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp HHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 99999988888764 367788999999863
No 20
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.94 E-value=1.3e-26 Score=177.28 Aligned_cols=170 Identities=17% Similarity=0.173 Sum_probs=116.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccC--------CCCcccccCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCP--------EGWVPVYTDAS 76 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~ 76 (192)
|++|+| ++|||+||||+|+|||..|+++|+||++||+|++.+....+++..... +.+.. ..+.+.+....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 689999 689999999999999999999999999999999988776666543321 11111 12223333456
Q ss_pred CceEEEeeccccccCCcccccCCchhHHH--HHHHHHhhc--CCCCcEEEEeCCCCCChhHHH-HHHHhhhhcCCeEEEe
Q psy9977 77 QTLAVMSIGFLLKNRDDAIIWRGPKKTAM--IRQIINDVC--WKDVDYLIIDTPPGTSDEHIT-VMECLREVQCDGAVLV 151 (192)
Q Consensus 77 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~l~~l~--~~~~D~IiiD~~~~~~~~~~~-~l~~~~~~~ad~viiv 151 (192)
.++++++.+....... ....+. ..++++.+. .+.|||||||+|+........ .+. ...+|.+++|
T Consensus 81 ~~l~~l~~~~~~~~~~-------~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~---~~~aD~viiv 150 (289)
T 2afh_E 81 GGVKCVESGGPEPGVG-------CAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIR---ENKAQEIYIV 150 (289)
T ss_dssp GGCEEEECCCCCTTTC-------CHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHH---TTCCCEEEEE
T ss_pred CCeEEEeCCCcccccc-------ccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhh---hhhCCEEEEE
Confidence 7899998764322111 011111 123333332 268999999999866432211 111 1149999999
Q ss_pred cCCCcccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 152 TTPQAVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
+.++..++..+.++++.+++ .+.++.|+|+|+++.
T Consensus 151 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 151 CSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 99999999999888887764 377788999999863
No 21
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.94 E-value=5.3e-26 Score=175.20 Aligned_cols=173 Identities=20% Similarity=0.146 Sum_probs=118.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccc----c-----CCCCcccccC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQ----C-----PEGWVPVYTD 74 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~ 74 (192)
+..|+|||+ +|||+||||+|+|||.+||++|+||++||+|++.++...+.+........ . .....+.+..
T Consensus 46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 357899998 79999999999999999999999999999999977665444433332110 0 1112223445
Q ss_pred CCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH-HHHHHhhhhcCCeEEEecC
Q psy9977 75 ASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI-TVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~-~~l~~~~~~~ad~viiv~~ 153 (192)
...++.+++.+...... .+........+..+.....++.||+|++|+++....... ..+.. ||.+++|+.
T Consensus 125 ~~~~i~~v~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~~al~a-----Ad~viIvt~ 195 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGT----GCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFAAPLQH-----ADQAVVVTA 195 (314)
T ss_dssp CGGGCEEEECCCCCTTC----SCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGGGGGGT-----CSEEEEEEC
T ss_pred cCCCeEEEeCCCCcccc----hhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhHhHHhh-----CCeEEEEeC
Confidence 56778888765433221 112223333444444322237899999999988755433 22333 999999999
Q ss_pred CCcccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 154 PQAVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
++..+++.+.++++.++. .+.++.|+|+|+.+.
T Consensus 196 ~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~ 232 (314)
T 3fwy_A 196 NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 232 (314)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc
Confidence 999999999988887763 467788999998654
No 22
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.8e-26 Score=179.36 Aligned_cols=183 Identities=21% Similarity=0.271 Sum_probs=120.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCccc----------cc
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPV----------YT 73 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 73 (192)
+..++|+|+|+|||+||||+|++||..+|++|+||++||+|++ ++++..|+.+.........+.... ..
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~ 94 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQ 94 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHH
Confidence 4568899999999999999999999999999999999999998 888888887532100000000000 00
Q ss_pred ----CCCCc-eE-EEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh------hH--------
Q psy9977 74 ----DASQT-LA-VMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD------EH-------- 133 (192)
Q Consensus 74 ----~~~~~-l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~------~~-------- 133 (192)
..... +. +++.. . . .....++++.....++++.+.+++++||+||||+||.... ..
T Consensus 95 ~~~~~~~~~~l~~~l~~~-l-~--~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~ 170 (329)
T 2woo_A 95 EMTEQADQQNPNNPLSGM-M-Q--DLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGK 170 (329)
T ss_dssp HHHHTC--------CCHH-H-H--HHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHhhHH-H-H--HHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHH
Confidence 00000 11 11100 0 0 0011234445555667777766656999999999994321 00
Q ss_pred -----------HHHHH----------------------------HhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCC
Q psy9977 134 -----------ITVME----------------------------CLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNI 174 (192)
Q Consensus 134 -----------~~~l~----------------------------~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~ 174 (192)
...+. .+.++..+.+++|+.|+..++.++.+.++.+++.++
T Consensus 171 l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi 250 (329)
T 2woo_A 171 LGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEI 250 (329)
T ss_dssp HHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCC
Confidence 01110 111223457999999999999999999999999999
Q ss_pred ceeeEEeccCcc----CCCCC
Q psy9977 175 KILGLIENMSGY----TCPHC 191 (192)
Q Consensus 175 ~~~g~v~N~~~~----~~~~~ 191 (192)
++.|+|+|++.+ .|++|
T Consensus 251 ~v~gvVvN~~~~p~~~~~~~~ 271 (329)
T 2woo_A 251 DTHNIVVNQLLLDPNTTCPQC 271 (329)
T ss_dssp EEEEEEEEEECCCSSCCCHHH
T ss_pred CCCEEEEeCCcCcccccCHHH
Confidence 999999999996 66665
No 23
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.93 E-value=2.6e-26 Score=181.37 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=118.6
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCC-----------CCcc
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPE-----------GWVP 70 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~ 70 (192)
.+.+++|+|+|+|||+||||+|++||..|+++|+||++||+| ..++++.++|.++.. +.+... .+.+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~ 218 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLES 218 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence 457899999999999999999999999999999999999999 668999999877653 111110 1223
Q ss_pred cccCCCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEE
Q psy9977 71 VYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAV 149 (192)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~vi 149 (192)
.......++++++.+........ .....+.++++.++ ++.||+||||+|++........+.. +|.++
T Consensus 219 ~i~~~~~~l~~l~~~~~~~~~~~-------~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~~~~l~~-----aD~vi 286 (373)
T 3fkq_A 219 CIKQSQEGVSYFSSTKVALDILE-------ISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSK-----AWRII 286 (373)
T ss_dssp TCEECTTSCEECCCCSSGGGGGG-------CCHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHHHHHHTT-----CSEEE
T ss_pred HhhcCCCCEEEecCCCChHhHHh-------CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHH-----CCEEE
Confidence 33344589999987643332211 13344555555554 3589999999999998766666555 99999
Q ss_pred EecCCCcccH---HHHHHHHHHhHhcCCceeeEEeccC
Q psy9977 150 LVTTPQAVSI---EDVRKEITFCKKTNIKILGLIENMS 184 (192)
Q Consensus 150 iv~~~~~~~~---~~~~~~~~~l~~~~~~~~g~v~N~~ 184 (192)
+|+.++..++ ..+.+.++.++.. . ..++|.|+.
T Consensus 287 vv~~~~~~s~~~l~~~~~~l~~l~~~-~-~~~vv~N~~ 322 (373)
T 3fkq_A 287 VVNDGSQLSNYKFMRAYESVVLLEQN-D-DINIIRNMN 322 (373)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHTTS-T-TCCCGGGEE
T ss_pred EEecCCchHHHHHHHHHHHHHHhccc-C-CcEEEehhH
Confidence 9999999884 4444555555442 2 255665554
No 24
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.93 E-value=1.3e-26 Score=181.62 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=120.2
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHH--hCCCeEEEEeeCCCCCCCCcccCCCCCCc-------cccC---CCCcc
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLK--DKGFKVGILDIDLCGPSVPHLLNIENSDV-------HQCP---EGWVP 70 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la--~~g~~vlliD~d~~~~~~~~~~~~~~~~~-------~~~~---~~~~~ 70 (192)
++..++|+|+|+|||+||||+|+|||..|| +.|+||++||+|++ ++++..||.+.... ..+. .....
T Consensus 14 ~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~ 92 (354)
T 2woj_A 14 TSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSA 92 (354)
T ss_dssp TCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHH
Confidence 456689999999999999999999999999 99999999999996 89999998764310 0000 00000
Q ss_pred ----cccCCC------------CceEEEeeccccccCCc-ccccCCchhHHHHHHHHHhhcCC------CCcEEEEeCCC
Q psy9977 71 ----VYTDAS------------QTLAVMSIGFLLKNRDD-AIIWRGPKKTAMIRQIINDVCWK------DVDYLIIDTPP 127 (192)
Q Consensus 71 ----~~~~~~------------~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~------~~D~IiiD~~~ 127 (192)
...... .+++.++.+... .+ ....++......+.++++.+++. +||+||||+||
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~---~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpP 169 (354)
T 2woj_A 93 ALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGAL---ADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAP 169 (354)
T ss_dssp HHHHHHTC--------------------CCSSHH---HHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCC
T ss_pred HHHHHHHHHHhhcccccccchhhhhhhccchhHH---HHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCC
Confidence 000000 134544321100 01 01234445556788888877631 79999999999
Q ss_pred CCC------hhH----------------HHH--------------------------HHHhhhhcCCeEEEecCCCcccH
Q psy9977 128 GTS------DEH----------------ITV--------------------------MECLREVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 128 ~~~------~~~----------------~~~--------------------------l~~~~~~~ad~viiv~~~~~~~~ 159 (192)
... ... ... ...+.++.+|.+++|+.|+..++
T Consensus 170 tG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si 249 (354)
T 2woj_A 170 TGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSL 249 (354)
T ss_dssp HHHHHHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchH
Confidence 311 000 000 01111235899999999999999
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.++.++++.+++.++++.++|+|++.+
T Consensus 250 ~ea~r~~~~L~~~g~~~~gvVvN~v~~ 276 (354)
T 2woj_A 250 YETERLIQELISYDMDVNSIIVNQLLF 276 (354)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCEEEEecCCC
Confidence 999999999999999999999999983
No 25
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.93 E-value=1.6e-26 Score=183.99 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=120.6
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHH------hCCCeEEEEeeCCCCCCCCcccCCCCC------C----ccccCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLK------DKGFKVGILDIDLCGPSVPHLLNIENS------D----VHQCPEG 67 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la------~~g~~vlliD~d~~~~~~~~~~~~~~~------~----~~~~~~~ 67 (192)
+++++|+|+|+|||+||||+|+|||..|+ ++|+||++||+|++ ++++.+|+.... . +......
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 184 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ-SSATMFLSHKHSIGIVNATSAQAMLQNVSR 184 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT-CHHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC-CChhHHhCCccccccccccHHHHHHhhccc
Confidence 46899999999999999999999999999 47999999999997 578888876532 1 1000000
Q ss_pred ---Ccc-cccCCCCceEEEeeccccccC----Cc---ccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHH
Q psy9977 68 ---WVP-VYTDASQTLAVMSIGFLLKNR----DD---AIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITV 136 (192)
Q Consensus 68 ---~~~-~~~~~~~~l~~~~~~~~~~~~----~~---~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~ 136 (192)
+.+ ......+++++++.+...... .. ............++++++.++ ++|||||||+||+.+......
T Consensus 185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~ 263 (398)
T 3ez2_A 185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKNA 263 (398)
T ss_dssp HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHHH
T ss_pred cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHHH
Confidence 111 233456899999877542110 00 000011122335567777777 799999999999998887777
Q ss_pred HHHhhhhcCCeEEEecCCCcccHHHHHH-------HHHHhHhc--CCceeeEEeccCccCC
Q psy9977 137 MECLREVQCDGAVLVTTPQAVSIEDVRK-------EITFCKKT--NIKILGLIENMSGYTC 188 (192)
Q Consensus 137 l~~~~~~~ad~viiv~~~~~~~~~~~~~-------~~~~l~~~--~~~~~g~v~N~~~~~~ 188 (192)
+.. +|.+++|+.|+..++..+.+ +++.+++. +.++.|+|.|..++.+
T Consensus 264 l~~-----aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~ 319 (398)
T 3ez2_A 264 LAS-----ANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSN 319 (398)
T ss_dssp HHH-----CSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECS
T ss_pred HHH-----CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCC
Confidence 776 99999999998886554433 44444443 4556677766655544
No 26
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.93 E-value=4.5e-26 Score=181.74 Aligned_cols=175 Identities=18% Similarity=0.195 Sum_probs=105.9
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHH------hCCCeEEEEeeCCCCCCCCcccCCCCCC----------ccccCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLK------DKGFKVGILDIDLCGPSVPHLLNIENSD----------VHQCPEG 67 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la------~~g~~vlliD~d~~~~~~~~~~~~~~~~----------~~~~~~~ 67 (192)
+++++|+|+|+|||+||||+|+|||..|+ ++|+||++||+|++. +++.+|+..... +......
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 187 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLDA 187 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCCH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhcccc
Confidence 46899999999999999999999999999 689999999999975 788888766531 0000000
Q ss_pred ---Ccc-cccCCCCceEEEeeccccccCCcc------ccc-CCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHH
Q psy9977 68 ---WVP-VYTDASQTLAVMSIGFLLKNRDDA------IIW-RGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITV 136 (192)
Q Consensus 68 ---~~~-~~~~~~~~l~~~~~~~~~~~~~~~------~~~-~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~ 136 (192)
+.+ ......+++++++.+......... ..+ ........++++++.++ ++|||||||+||+.+......
T Consensus 188 ~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~a 266 (403)
T 3ez9_A 188 ETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLNG 266 (403)
T ss_dssp HHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHHH
T ss_pred cccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHHH
Confidence 111 123446899999887542110000 000 11122234467777777 799999999999999877777
Q ss_pred HHHhhhhcCCeEEEecCCCcccHHHHH-------HHHHHhHhc--CCceeeE--EeccCc
Q psy9977 137 MECLREVQCDGAVLVTTPQAVSIEDVR-------KEITFCKKT--NIKILGL--IENMSG 185 (192)
Q Consensus 137 l~~~~~~~ad~viiv~~~~~~~~~~~~-------~~~~~l~~~--~~~~~g~--v~N~~~ 185 (192)
+.. +|.+++|+.|+..++..+. ++++.+++. +.++.|+ ++|+++
T Consensus 267 l~~-----aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 267 LAA-----SDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp HHH-----CSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred HHH-----CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 776 9999999999887655443 344444443 4445555 444443
No 27
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.92 E-value=3.7e-26 Score=178.19 Aligned_cols=177 Identities=15% Similarity=0.175 Sum_probs=103.3
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHH--hCCCeEEEEeeCCCCCCCCcccCCCCCC----------ccccCCC---
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLK--DKGFKVGILDIDLCGPSVPHLLNIENSD----------VHQCPEG--- 67 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la--~~g~~vlliD~d~~~~~~~~~~~~~~~~----------~~~~~~~--- 67 (192)
++..++|+|+|+|||+||||+|++||..+| +.|+||++||+|++ ++++.+||.+... +......
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~-~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~ 92 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA-HNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEA 92 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CHHHHHHTSCCCSSCEEETTEEEEEEEECCC--
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CChHHHhccccCCCceeccCCCCceEEeeCHHH
Confidence 455567888889999999999999999999 89999999999965 7888888864221 0000000
Q ss_pred -CcccccC-------CCCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCC------------CCcEEEEeCCC
Q psy9977 68 -WVPVYTD-------ASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWK------------DVDYLIIDTPP 127 (192)
Q Consensus 68 -~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------------~~D~IiiD~~~ 127 (192)
..+.... ...++..+. +......++......+.++++.+++. +||+||||+||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpP 165 (348)
T 3io3_A 93 AMSDLQQQASQYNNDPNDPLKSMM-------SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAP 165 (348)
T ss_dssp ----------------------------------------------------------------------CCEEEEECSS
T ss_pred HHHHHHHHHHhhcccccccHhHHh-------HHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCC
Confidence 0000000 000011110 01111113333334556666655522 89999999999
Q ss_pred CCChhHH------------------------------------------------HHHHHhhhhcCCeEEEecCCCcccH
Q psy9977 128 GTSDEHI------------------------------------------------TVMECLREVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 128 ~~~~~~~------------------------------------------------~~l~~~~~~~ad~viiv~~~~~~~~ 159 (192)
....... .....+.++..+.+++|+.|+..++
T Consensus 166 tg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~ 245 (348)
T 3io3_A 166 TGHTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSL 245 (348)
T ss_dssp HHHHHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHH
Confidence 3211000 0111122345689999999999999
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++.+.++.+++.++++.|+|+|++.+.
T Consensus 246 ~ea~r~~~~L~~~gi~v~gvVvN~~~~~ 273 (348)
T 3io3_A 246 YETERMIQELMSYNMDVNSIVVNQLLFA 273 (348)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 9999999999999999999999999873
No 28
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.92 E-value=1.8e-26 Score=176.30 Aligned_cols=163 Identities=21% Similarity=0.249 Sum_probs=114.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCce-EEEe
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTL-AVMS 83 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 83 (192)
++++|+|+|+|||+||||+|++||..|+++|+||++||+|+.++++..+++.... +.+.. ......++ ++++
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~-~~~~~------~~~~~~~l~~vl~ 75 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRA-WLDNK------KIELPEPLALNLS 75 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHH-HHHHH------TCCCCCCEEECSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChh-HhHhc------cccCCCchheEee
Confidence 5689999999999999999999999999999999999999955788777764331 00000 00113456 6665
Q ss_pred ecc-ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHH
Q psy9977 84 IGF-LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDV 162 (192)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~ 162 (192)
.+. ....+. .......+.++++.++ +.|||||||+||+........+.. +|.+++|+.++..++..+
T Consensus 76 ~~~~~~~~~~------~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~-----aD~viiv~~~~~~~~~~~ 143 (286)
T 2xj4_A 76 DNDVALAERP------EEEQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMAHGR-----ADLVVTPMNDSFVDFDML 143 (286)
T ss_dssp SCHHHHTTSC------HHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHHHHT-----CSEEEEEEESSHHHHTTT
T ss_pred CCCCCCcChh------hhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHHHHH-----CCEEEEEEcCCccHHHHH
Confidence 421 111111 1123456888888887 799999999999997766555555 999999999998887766
Q ss_pred HHHHHH-------------h---H-------hcC-CceeeEEeccCccC
Q psy9977 163 RKEITF-------------C---K-------KTN-IKILGLIENMSGYT 187 (192)
Q Consensus 163 ~~~~~~-------------l---~-------~~~-~~~~g~v~N~~~~~ 187 (192)
.++++. + + ..+ .+ +++|+|+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~~ 191 (286)
T 2xj4_A 144 GTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLATT 191 (286)
T ss_dssp EEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTTC
T ss_pred HHHHHHhhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecCC
Confidence 544433 3 2 223 44 57999998753
No 29
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.92 E-value=1.4e-24 Score=158.63 Aligned_cols=131 Identities=23% Similarity=0.286 Sum_probs=102.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeecc
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIGF 86 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (192)
++|+|+|+|||+||||+|.+||..|+++| ||++||+|++. ++..+++. . . . + .++++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~-~~~~~~~~-~-~-------l-~--------~~vi~~-- 58 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR-SATGWGKR-G-S-------L-P--------FKVVDE-- 58 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC-HHHHHHHH-S-C-------C-S--------SEEEEG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC-CHHHHhcC-C-C-------C-C--------cceeCH--
Confidence 48999999999999999999999999999 99999999985 44444443 1 0 0 0 023321
Q ss_pred ccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCC-CChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHH
Q psy9977 87 LLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPG-TSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKE 165 (192)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~-~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~ 165 (192)
. .++.++ +.||+||||+||. ........+.. +|.+++|+.++..++..+.++
T Consensus 59 -----------------~----~l~~l~-~~yD~viiD~p~~~~~~~~~~~l~~-----aD~viiv~~~~~~~~~~~~~~ 111 (209)
T 3cwq_A 59 -----------------R----QAAKYA-PKYQNIVIDTQARPEDEDLEALADG-----CDLLVIPSTPDALALDALMLT 111 (209)
T ss_dssp -----------------G----GHHHHG-GGCSEEEEEEECCCSSSHHHHHHHT-----SSEEEEEECSSHHHHHHHHHH
T ss_pred -----------------H----HHHHhh-hcCCEEEEeCCCCcCcHHHHHHHHH-----CCEEEEEecCCchhHHHHHHH
Confidence 0 233344 6899999999999 76665555554 999999999999999999999
Q ss_pred HHHhHhc-CCceeeEEeccCccC
Q psy9977 166 ITFCKKT-NIKILGLIENMSGYT 187 (192)
Q Consensus 166 ~~~l~~~-~~~~~g~v~N~~~~~ 187 (192)
++.+++. +.+ .++|+|+++..
T Consensus 112 ~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 112 IETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp HHHHHHTCSSS-EEEEECSBCCT
T ss_pred HHHHHhccCCC-EEEEEEecCCc
Confidence 9999874 555 78999998753
No 30
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.87 E-value=1.2e-21 Score=153.78 Aligned_cols=165 Identities=20% Similarity=0.213 Sum_probs=112.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC-ccccCCCCcccccCCCCceEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD-VHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
|++|.++++|||+||||+|++||..++++|+||++||+ ++ ++++..|+..... .... .++++.+..
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~-~~l~~~~~~~~~~~~~~v-----------~~~L~~~ei 67 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE-PVLPLLLEQTLTPDPQQI-----------APNLEVVQF 67 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC-SHHHHHHTSCCCSSCEEE-----------ETTEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC-CChHHhhCCCCCCCcccc-----------ccccccccc
Confidence 35678889999999999999999999999999999999 54 7888888865321 1110 111211100
Q ss_pred ------------------------ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH-------
Q psy9977 85 ------------------------GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH------- 133 (192)
Q Consensus 85 ------------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~------- 133 (192)
+.....+.+....++......+.++.+..++.+||+||||+||......
T Consensus 68 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~ 147 (374)
T 3igf_A 68 QSSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPES 147 (374)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHH
Confidence 0001111122223454555556666655555789999999999322100
Q ss_pred -----------------------HH--------------------------------HHHHhhhhcCCeEEEecCCCccc
Q psy9977 134 -----------------------IT--------------------------------VMECLREVQCDGAVLVTTPQAVS 158 (192)
Q Consensus 134 -----------------------~~--------------------------------~l~~~~~~~ad~viiv~~~~~~~ 158 (192)
.. ....+.+++.+.+++|+.|+..+
T Consensus 148 l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~s 227 (374)
T 3igf_A 148 LSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLE 227 (374)
T ss_dssp HHHHHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHH
T ss_pred HHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccH
Confidence 00 01112145557899999999999
Q ss_pred HHHHHHHHHHhHhcCCceeeEEecc
Q psy9977 159 IEDVRKEITFCKKTNIKILGLIENM 183 (192)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~g~v~N~ 183 (192)
+.++.+.++.+++.|+++.|+|+|+
T Consensus 228 l~ea~r~~~~L~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 228 VVSVRYLWGSAQQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCccEEEEcC
Confidence 9999999999999999999999999
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.86 E-value=3e-22 Score=166.64 Aligned_cols=173 Identities=21% Similarity=0.221 Sum_probs=113.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++|.|+|+|||+||||+|++||..++++|+||++||+|++ +++...|+.+........ ....++.....
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~~~v--------~~~~~l~~~~~ 76 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAI--------ASVPGLSALEI 76 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSCEEC--------TTSTTEEEEEC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCCcee--------ccchhhhhccC
Confidence 445677899999999999999999999999999999999995 899998887643210000 01122222211
Q ss_pred cccc---------------ccCCcc-----cccCC-----chhHHHHHHHHH--hhcCCCCcEEEEeCCCCCChhH----
Q psy9977 85 GFLL---------------KNRDDA-----IIWRG-----PKKTAMIRQIIN--DVCWKDVDYLIIDTPPGTSDEH---- 133 (192)
Q Consensus 85 ~~~~---------------~~~~~~-----~~~~~-----~~~~~~l~~~l~--~l~~~~~D~IiiD~~~~~~~~~---- 133 (192)
.... ..+... ....+ ....+.+.+++. .++ .+||+||||+||......
T Consensus 77 d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~-~~yD~VIiDt~P~~~~lrll~l 155 (589)
T 1ihu_A 77 DPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL-TRFDHIIFDTAPTGHTIRLLQL 155 (589)
T ss_dssp CHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH-HHCSEEEESSCCCHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc-ccCCEEEECCCCchhHHHHHHh
Confidence 0000 000000 00000 012334566666 444 689999999998632210
Q ss_pred -------------------------------HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEec
Q psy9977 134 -------------------------------ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIEN 182 (192)
Q Consensus 134 -------------------------------~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N 182 (192)
......+.++..+.+++|+.++..++.++.+.++.+++.+++..|+|+|
T Consensus 156 P~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN 235 (589)
T 1ihu_A 156 PGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVIN 235 (589)
T ss_dssp GGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred HHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEc
Confidence 1122222222345799999999999999999999999999999999999
Q ss_pred cCccC
Q psy9977 183 MSGYT 187 (192)
Q Consensus 183 ~~~~~ 187 (192)
++...
T Consensus 236 ~v~~~ 240 (589)
T 1ihu_A 236 GVLPK 240 (589)
T ss_dssp EECCG
T ss_pred CCcCc
Confidence 98753
No 32
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.86 E-value=1.6e-21 Score=143.59 Aligned_cols=169 Identities=12% Similarity=0.095 Sum_probs=103.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcc-cCCCCCC--ccccCCCCcccccCCCCceEEE
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHL-LNIENSD--VHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
.|+|+|+|.|||+||||+|.|||..|+++|+||+++| ++..+.... .+..... ......+...... .. +...+
T Consensus 1 ~k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-~~~~~ 76 (224)
T 1byi_A 1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQLDYA-TV-NPYTF 76 (224)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCCCHH-HH-CSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCCChh-hc-ccEEe
Confidence 3789999999999999999999999999999999975 332211100 0000000 0000000000000 00 00111
Q ss_pred eeccccccCCcc-cccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh------HHHHHHHhhhhcCCeEEEecCCC
Q psy9977 83 SIGFLLKNRDDA-IIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE------HITVMECLREVQCDGAVLVTTPQ 155 (192)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~------~~~~l~~~~~~~ad~viiv~~~~ 155 (192)
... ..+... ...........+.+.++.++ ++|||||||+||++... ........ .+.+++|+.++
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~----~~~vi~v~~~~ 148 (224)
T 1byi_A 77 AEP---TSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQE----QLPVILVVGVK 148 (224)
T ss_dssp SSC---SCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHH----TCCEEEEEECS
T ss_pred CCC---CCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHh----CCCEEEEecCC
Confidence 100 000000 00011123466778888887 79999999999887642 12222221 34588999999
Q ss_pred cccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 156 AVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..++..+.+.++.+++.+.++.|+|+|+++.
T Consensus 149 ~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 149 LGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred CCcHHHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 9999999999999998899999999999875
No 33
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.85 E-value=9.7e-22 Score=163.55 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=108.4
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCC--------cccccCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGW--------VPVYTDA 75 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 75 (192)
...+++.|+++|||+||||+|++||..++++|++|+++|+|++ +++...++.....+....... .......
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~-~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA-AHLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc-ccHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999999999998 677777776432211100000 0000000
Q ss_pred CCceEEEeeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh----------------------H
Q psy9977 76 SQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE----------------------H 133 (192)
Q Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~----------------------~ 133 (192)
..++. .... ....+....++......++++.+.+++.+||+||||+||+.... .
T Consensus 403 ~~~l~---~~~~-~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~ 478 (589)
T 1ihu_A 403 GKELD---EAGK-RLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHF 478 (589)
T ss_dssp HTTCC---HHHH-HHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-----------------
T ss_pred hccCC---hhhH-HHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHH
Confidence 00111 0000 00000000011122234555555444357999999999984311 0
Q ss_pred HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 134 ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 134 ~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
...+..+.++.+|.+++|+.++..++.++.++++.+++.+++..|+|+|++...|
T Consensus 479 ~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~ 533 (589)
T 1ihu_A 479 TTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIA 533 (589)
T ss_dssp -CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTS
T ss_pred HHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCC
Confidence 1112222233579999999999999999999999999999999999999998754
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.75 E-value=5.8e-18 Score=135.47 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=97.6
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
+++++|+|+ ++||+||||++.+||.+|+++ |++|+++|+|++++.....+. ......+++++
T Consensus 98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~----------------~~~~~~~l~v~ 160 (433)
T 2xxa_A 98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE----------------TLAEQVGVDFF 160 (433)
T ss_dssp SSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH----------------HHHHHHTCEEC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH----------------hhcccCCeeEE
Confidence 456788888 689999999999999999998 999999999999765321100 01122455665
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh--HHHHHHHhh-hhcCCeEEEecCCCcccH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE--HITVMECLR-EVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~--~~~~l~~~~-~~~ad~viiv~~~~~~~~ 159 (192)
+.+.. . .....+.+.+..+++..||+||||+||..... ....+..+. ...+|.+++|+++...
T Consensus 161 ~~~~~-~-----------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g-- 226 (433)
T 2xxa_A 161 PSDVG-Q-----------KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG-- 226 (433)
T ss_dssp CCCSS-S-----------CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC--
T ss_pred eCCCC-C-----------CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh--
Confidence 53321 0 11233466666665368999999999876532 222222111 1247888888887532
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+..+.+.. ++++.|+|+|+++..
T Consensus 227 ~~~~~~~~~f~~-~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 227 QDAANTAKAFNE-ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTHHHHHHHHHH-HSCCCCEEEECTTSS
T ss_pred HHHHHHHHHHhc-cCCCeEEEEecCCCC
Confidence 233344444443 466789999999864
No 35
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.70 E-value=2.1e-16 Score=122.04 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=97.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
+.+++|+|+|. +|+||||++.+||..++..|++|+++|+|++++.....+ . .+.. .....++.+++
T Consensus 103 ~~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql-------~----~~~~--~~~~~~l~vip 168 (320)
T 1zu4_A 103 NRLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQL-------E----EWIK--TRLNNKVDLVK 168 (320)
T ss_dssp TSCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHH-------H----HHHT--TTSCTTEEEEC
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHH-------H----HHHh--ccccCCceEEe
Confidence 46789999976 999999999999999999999999999998764321000 0 0000 01135677774
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHH---Hhh----hhcCCeEEEecCC
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVME---CLR----EVQCDGAVLVTTP 154 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~---~~~----~~~ad~viiv~~~ 154 (192)
.+.....| .....+.+...++ +.||+||||+||....... ..+. .+. ...+|.+++|+++
T Consensus 169 ~~~~~~~p----------~~~~~~~l~~~~~-~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a 237 (320)
T 1zu4_A 169 ANKLNADP----------ASVVFDAIKKAKE-QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDA 237 (320)
T ss_dssp CSSTTCCH----------HHHHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEG
T ss_pred CCCCCCCH----------HHHHHHHHHHHHh-cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEEC
Confidence 43211111 1112233333334 7999999999998875321 1111 111 2347888899887
Q ss_pred CcccHHHHHHHHHHhHhcCCceeeEEeccCccCC
Q psy9977 155 QAVSIEDVRKEITFCKKTNIKILGLIENMSGYTC 188 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~~ 188 (192)
. ...+.+.+.. .+.. ..++.|+|+|+++...
T Consensus 238 ~-~~~~~l~~~~-~~~~-~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 238 T-TGQNGVIQAE-EFSK-VADVSGIILTKMDSTS 268 (320)
T ss_dssp G-GTHHHHHHHH-HHTT-TSCCCEEEEECGGGCS
T ss_pred C-CcHHHHHHHH-HHhh-cCCCcEEEEeCCCCCC
Confidence 7 3344444433 3332 3678899999998643
No 36
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.69 E-value=7.2e-17 Score=123.39 Aligned_cols=150 Identities=21% Similarity=0.273 Sum_probs=95.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEeec
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSIG 85 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 85 (192)
+++|+++ +++|+||||++.+||..++.+|++|+++|+|++++.....+.. + ....++.+++..
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~-----------~-----~~~~~v~v~~~~ 160 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ-----------L-----GQQIGVPVYGEP 160 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH-----------H-----HHHHTCCEECCT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH-----------H-----hccCCeEEEecC
Confidence 6677777 6899999999999999999999999999999987644211100 0 011234444321
Q ss_pred cccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCC--hhHHHH--HHHh-hhhcCCeEEEecCCCcccHH
Q psy9977 86 FLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTS--DEHITV--MECL-REVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~--~~~~~~--l~~~-~~~~ad~viiv~~~~~~~~~ 160 (192)
. .....+.+.+.+..+++++||+||||+||... ...... +..+ ....+|.+++|+++.. . .
T Consensus 161 ~------------~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g-~ 226 (297)
T 1j8m_F 161 G------------EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI-G-Q 226 (297)
T ss_dssp T------------CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG-G-G
T ss_pred C------------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc-h-H
Confidence 0 01122344566666644699999999999887 322111 1000 0125899999988763 2 3
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
...+..+.+.. .+++.|+|+||++..
T Consensus 227 ~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 227 KAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp GHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred HHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 33334444444 577789999999853
No 37
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.66 E-value=2.3e-16 Score=116.36 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=106.7
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCccc-CCCCCCccccCCCCcccccCCCCceEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLL-NIENSDVHQCPEGWVPVYTDASQTLAV 81 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (192)
+++||.|.|+|+..|+|||+++++|+++|+++|++|.++- +...+....- +..+.+......+...... ..+...
T Consensus 1 ~~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~~~~~~~~~D~~~~~~~~~~~~~--~~~~~~ 76 (228)
T 3of5_A 1 SNAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQFSELCEDVESILNAYKHKFTAA--EINLIS 76 (228)
T ss_dssp CTTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCSSSSSBHHHHHHHHHTTTSSCHH--HHCSEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCccCCCCCChHHHHHHhcCCCCChh--hEEEEE
Confidence 3568999999999999999999999999999999999954 2111110000 0000000000001100000 011122
Q ss_pred EeeccccccCCccccc-CCchhHHHHHHHHHh-hcCCCCcEEEEeCCCCCChh------HHHHHHHhhhhcCCeEEEecC
Q psy9977 82 MSIGFLLKNRDDAIIW-RGPKKTAMIRQIIND-VCWKDVDYLIIDTPPGTSDE------HITVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~-l~~~~~D~IiiD~~~~~~~~------~~~~l~~~~~~~ad~viiv~~ 153 (192)
+.... .|..+... ......+.+.+.+.. +. ++||++|||+++++... ....+..+ ..-+++|++
T Consensus 77 ~~~p~---sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l----~~pviLV~~ 148 (228)
T 3of5_A 77 FNQAV---APHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL----QIPVLLVSA 148 (228)
T ss_dssp ESSSS---CHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH----TCCEEEEEE
T ss_pred ECCCC---CHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHc----CCCEEEEEc
Confidence 21110 11111001 112244667777877 77 79999999999765321 22233332 456899999
Q ss_pred CCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 154 PQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
++..++..+...++.+++.++++.|+|+|+++..
T Consensus 149 ~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 149 IKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred CCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 9999999999999999999999999999998753
No 38
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.65 E-value=7.8e-16 Score=114.14 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=105.9
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCC---c----cccCCCCcccccC
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD---V----HQCPEGWVPVYTD 74 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~ 74 (192)
+.+++|.|.|+++..|+|||++++.|+++|+++|++|.++-- ...+....-+ .+.+ + .....+... .
T Consensus 17 ~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP--v~~g~~~~~~-~~~D~~~~~~~~~~~~~g~~~--~- 90 (242)
T 3qxc_A 17 LYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP--IETGVNDAIN-HSSDAHLFLQDNRLLDRSLTL--K- 90 (242)
T ss_dssp --CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC--EECSCCTTTC-CCSHHHHHHHHHHTTCTTCCH--H-
T ss_pred HhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee--eecCCcccCC-CCchHHHHHHHHHHHhCCCCh--H-
Confidence 456889999999999999999999999999999999999852 1111110000 1111 1 111001100 0
Q ss_pred CCCceEEEeeccccccCCcccccCC---chhHHHHHHHHHhhcCCCCcEEEEeCCCCCChh------HHHHHHHhhhhcC
Q psy9977 75 ASQTLAVMSIGFLLKNRDDAIIWRG---PKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDE------HITVMECLREVQC 145 (192)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~------~~~~l~~~~~~~a 145 (192)
.. +...+.. +..|..+....+ ....+.+.+.+..++ ++||+||||+++++... .......+ .
T Consensus 91 ~~-~p~~~~~---p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l----~ 161 (242)
T 3qxc_A 91 DI-SFYRYHK---VSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKL----K 161 (242)
T ss_dssp HH-CCEECSS---SSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHH----T
T ss_pred He-eeEEECC---CCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHc----C
Confidence 00 0111110 000000000011 234566788888887 79999999999876532 12223332 4
Q ss_pred CeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 146 DGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 146 d~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.-+|+|++++..+++.+...++.++..+++ .|+|+|+++.
T Consensus 162 ~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~ 201 (242)
T 3qxc_A 162 AKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGN 201 (242)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTT
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 568999999999999999999999999999 9999999874
No 39
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.64 E-value=3.5e-15 Score=111.24 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=106.2
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
.+.|+.|.|+++..|+|||++++.|+++|+++|++|.++--=.... ... + .+..+.....+... ..+...+
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~-~~~--~-~D~~~~~~~~g~~~-----~~~~~~~ 93 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGT-ARG--D-DDLAEVGRLAGVTQ-----LAGLARY 93 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCG-GGT--C-CHHHHHHHHHCCCE-----EEEEEEC
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCC-CCC--C-HHHHHHHHHcCCCC-----CCCCeeE
Confidence 4578999999999999999999999999999999999975211110 000 0 01110000000000 0011111
Q ss_pred eeccccccCCcccccCC--chhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh-------hHHHHHHHhhhhcCCeEEEecC
Q psy9977 83 SIGFLLKNRDDAIIWRG--PKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD-------EHITVMECLREVQCDGAVLVTT 153 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~-------~~~~~l~~~~~~~ad~viiv~~ 153 (192)
.. +..|..+....+ ....+.+.+.++.++ ++||+||||+++++.. ........+ ..-+|+|++
T Consensus 94 ~~---p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~l----~~pVILV~~ 165 (251)
T 3fgn_A 94 PQ---PMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDV----AAAALVVVT 165 (251)
T ss_dssp SS---SSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHHT----TCEEEEEEC
T ss_pred CC---CCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHHc----CCCEEEEEc
Confidence 10 001111100111 234566888888887 8999999999987632 112233332 567899999
Q ss_pred CCcccHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 154 PQAVSIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
++..++..+...++.+++.++++.|+|+|++.
T Consensus 166 ~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 166 ADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp SSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 99999999999999999999999999999984
No 40
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.62 E-value=1.8e-15 Score=115.68 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=94.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++++++ +++|+||||++.+||..++..|.+|+++|+|++++.....++ .. ....++.+++.
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~--------------~~--~~~~~l~~~~~ 159 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR--------------LL--GEKVGVPVLEV 159 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH--------------HH--HHHHTCCEEEC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH--------------Hh--cccCCeEEEEc
Confidence 56788888 789999999999999999999999999999998754321111 00 01234555543
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHh-hhhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECL-REVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~-~~~~ad~viiv~~~~~~~~~~ 161 (192)
+.. .. ..+.++..+..+...+||+||+|+||...... ...+..+ ....+|.+++|+++.. . ..
T Consensus 160 ~~~-~~-----------p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~ 225 (295)
T 1ls1_A 160 MDG-ES-----------PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QE 225 (295)
T ss_dssp CTT-CC-----------HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HH
T ss_pred CCC-CC-----------HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HH
Confidence 321 01 11223445555422589999999998765421 1221111 1124788888888763 3 33
Q ss_pred HHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+..+.+.. .+++.|+|+|+++..
T Consensus 226 ~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 226 ALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred HHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 3333444443 366789999999864
No 41
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.62 E-value=4.3e-15 Score=118.54 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=93.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++|+++|. +|+||||++.+||.+|+++|++|+++++|++++.....+. ......++.+...
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~----------------~~~~~~gvpv~~~ 161 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLR----------------QLLDRYHIEVFGN 161 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHH----------------HHHGGGTCEEECC
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH----------------HHHHhcCCcEEec
Confidence 4677888765 9999999999999999999999999999998764211000 0001112222211
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHh-hhhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECL-REVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~-~~~~ad~viiv~~~~~~~~~~ 161 (192)
.. .......+.+.+..++.+.||+||||+++...... ...+..+ ....+|.+++|+++... . .
T Consensus 162 ~~------------~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g-q-~ 227 (443)
T 3dm5_A 162 PQ------------EKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG-Q-Q 227 (443)
T ss_dssp TT------------CCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG-G-G
T ss_pred CC------------CCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc-h-h
Confidence 10 01123345555666553579999999998665322 1112111 12357889999988642 2 2
Q ss_pred HHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.....+.+.. ..++.|+|+||+|-.
T Consensus 228 a~~~a~~f~~-~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 228 AYNQALAFKE-ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHHHHHHHHH-SCTTEEEEEECCSSC
T ss_pred HHHHHHHHHh-hCCCeEEEEECCCCc
Confidence 3333444443 456789999999853
No 42
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=5e-16 Score=116.61 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=88.2
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccC-CCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTD-ASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 82 (192)
.++..+.+++++||+||||++.+||..++ .|++|++||+|++...+....+. .+.... ...+.... ...+..++
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~ 85 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSI---DVREFV-TVEEIMREGYGPNGAIV 85 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSE---EGGGTC-CHHHHHTTTCCHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCC---Chhhcc-cHHHHhhccCCCCCcEE
Confidence 45678999999999999999999999999 99999999999987654211110 000000 00000000 00000001
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH-----HHHHhhhhcCCeEEEecCCCc-
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT-----VMECLREVQCDGAVLVTTPQA- 156 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~-----~l~~~~~~~ad~viiv~~~~~- 156 (192)
+.. + . .......+.+.++.++ .+||++|+|+|+..+..... ....+ .. +.++.++++..
T Consensus 86 ~~~-------~-~---~~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~ 150 (262)
T 1yrb_A 86 ESY-------D-R---LMEKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEIL 150 (262)
T ss_dssp HHH-------H-H---HHTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGC
T ss_pred ecH-------H-H---HhhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhh
Confidence 000 0 0 0012345666666665 57999999999876543221 11222 12 44555554421
Q ss_pred ccHHHHHHH----HHHhHhcCCceeeEEeccCcc
Q psy9977 157 VSIEDVRKE----ITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 157 ~~~~~~~~~----~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+....... .......+.+.+ +|+||.|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~p~~-iv~NK~D~ 183 (262)
T 1yrb_A 151 KKPNDYCFVRFFALLIDLRLGATTI-PALNKVDL 183 (262)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTSCEE-EEECCGGG
T ss_pred cCHHHHHHHHHHHHHHhcccCCCeE-EEEecccc
Confidence 122222211 122334567665 99999985
No 43
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.62 E-value=1.4e-15 Score=121.11 Aligned_cols=151 Identities=17% Similarity=0.224 Sum_probs=96.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++|+++ +++|+||||++.+||..++..|++|+++|+|++++.....+.. + ....++++++.
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~-----------~-----~~~~gv~v~~~ 159 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL-----------L-----GEKVGVPVLEV 159 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH-----------H-----HHHHTCCEEEC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH-----------h-----cccCCccEEec
Confidence 46788888 6799999999999999999999999999999987654221110 0 01234555554
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHh-hhhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECL-REVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~-~~~~ad~viiv~~~~~~~~~~ 161 (192)
+.. . ...+.+.+.+..++.+.||+||||+||...... ...+..+ ....+|.+++|+++.. . ..
T Consensus 160 ~~~-~-----------~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t-g-q~ 225 (425)
T 2ffh_A 160 MDG-E-----------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QE 225 (425)
T ss_dssp CTT-C-----------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-TH
T ss_pred CCC-C-----------CHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc-h-HH
Confidence 321 0 112233556666533699999999998875321 1111111 0124888999988753 2 33
Q ss_pred HHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 162 VRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 162 ~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+..+.+.. .+++.|+|+|+++..
T Consensus 226 av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 226 ALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 3344444443 366789999999753
No 44
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.56 E-value=1.1e-14 Score=118.17 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=91.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
+.+++|+|+ +.+|+||||++.+||.+++++|++|++||+|++++.....+.. + ....++.+++
T Consensus 99 ~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~-----------~-----~~~~~i~v~~ 161 (504)
T 2j37_W 99 GKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQ-----------N-----ATKARIPFYG 161 (504)
T ss_dssp S--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHH-----------H-----HHHHTCCEEE
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHH-----------H-----hhccCceEEc
Confidence 456788888 5589999999999999999999999999999987644211110 0 0011223332
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHhh-hhcCCeEEEecCCCcccHH
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECLR-EVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~~-~~~ad~viiv~~~~~~~~~ 160 (192)
... .. ...+.+.+.+..+++..||+||||+|+...... ...+..+. ...+|.+++|+++.... +
T Consensus 162 ~~~----~~--------dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~ 228 (504)
T 2j37_W 162 SYT----EM--------DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-A 228 (504)
T ss_dssp CCC----CS--------CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-T
T ss_pred cCC----CC--------CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-c
Confidence 110 00 112233444554433689999999999875321 11111110 11589999999886532 2
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+..+.+... +++.++|+|++|..
T Consensus 229 -~~~~a~~~~~~-~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 229 -CEAQAKAFKDK-VDVASVIVTKLDGH 253 (504)
T ss_dssp -HHHHHHHHHHH-HCCCCEEEECTTSC
T ss_pred -HHHHHHHHHhh-cCceEEEEeCCccc
Confidence 23334444432 55668999999864
No 45
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.54 E-value=3.7e-14 Score=113.49 Aligned_cols=150 Identities=20% Similarity=0.275 Sum_probs=92.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++|+|+| .+|+||||++.+||..++++|++|+++|+|++++.....+. .. ....++.+++.
T Consensus 98 ~~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~--------------~~--~~~~gv~v~~~ 160 (432)
T 2v3c_C 98 KQNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLK--------------QL--AEKIHVPIYGD 160 (432)
T ss_dssp SCCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSH--------------HH--HHHSSCCEECC
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHH--------------Hh--hhccCcceEec
Confidence 456888886 59999999999999999999999999999999875422110 00 01123444432
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhH--HHHHHHhh-hhcCCeEEEecCCCcccHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEH--ITVMECLR-EVQCDGAVLVTTPQAVSIED 161 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~--~~~l~~~~-~~~ad~viiv~~~~~~~~~~ 161 (192)
+.....| ...+.+.+..+ ..||+||||+|+...... ...+..+. ...+|.+++|+++.... .
T Consensus 161 ~~~~~dp-----------~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~ 225 (432)
T 2v3c_C 161 ETRTKSP-----------VDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q 225 (432)
T ss_dssp SSSCCSS-----------STTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G
T ss_pred CCCCCCH-----------HHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H
Confidence 2100010 01134445544 589999999999876421 11121111 12478888988775432 2
Q ss_pred HHHHHHHhHhcCC-ceeeEEeccCccC
Q psy9977 162 VRKEITFCKKTNI-KILGLIENMSGYT 187 (192)
Q Consensus 162 ~~~~~~~l~~~~~-~~~g~v~N~~~~~ 187 (192)
.....+.+.. ++ ++.++|+|++|..
T Consensus 226 ~~~~~~~~~~-~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 226 AGIQAKAFKE-AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp HHHHHHHHHT-TSCSCEEEEEECSSSC
T ss_pred HHHHHHHHhh-cccCCeEEEEeCCCCc
Confidence 3333344433 45 6789999999864
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.49 E-value=1.7e-13 Score=109.38 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=89.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
.+++|+++ +.+|+||||++.+||.+++++|++|+++++|.+++.....+. ......++.+...
T Consensus 96 ~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~----------------~~~~~~gv~~~~~ 158 (433)
T 3kl4_A 96 LPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL----------------QLGNQIGVQVYGE 158 (433)
T ss_dssp SSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHH----------------HHHHTTTCCEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHH----------------HHHHhcCCceeec
Confidence 45667776 678999999999999999999999999999987653210000 0000112222111
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCC----hhHHHHHHHh-hhhcCCeEEEecCCCcccH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTS----DEHITVMECL-REVQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~----~~~~~~l~~~-~~~~ad~viiv~~~~~~~~ 159 (192)
.. .........+.+..+.+..||+||||+|+... ......+..+ .....|.+++|+++...
T Consensus 159 ~~------------~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g-- 224 (433)
T 3kl4_A 159 PN------------NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG-- 224 (433)
T ss_dssp TT------------CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--
T ss_pred cc------------cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--
Confidence 00 00122334555666655699999999998644 1111222211 12246888888887642
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+....+.+.+ .+++.|+|+||.|-.
T Consensus 225 q~a~~~a~~f~~-~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 225 QKAYDLASRFHQ-ASPIGSVIITKMDGT 251 (433)
T ss_dssp GGGHHHHHHHHH-HCSSEEEEEECGGGC
T ss_pred hHHHHHHHHHhc-ccCCcEEEEeccccc
Confidence 223334444443 234579999999854
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.46 E-value=5.1e-13 Score=102.36 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
+++++|+++|. +|+||||++.+||..++..|++|+++|+|.+++..... + ..+. ...++.+++
T Consensus 102 ~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eq-------L----~~~~-----~~~gl~~~~ 164 (306)
T 1vma_A 102 EPPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQ-------L----KIWG-----ERVGATVIS 164 (306)
T ss_dssp SSCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHH-------H----HHHH-----HHHTCEEEC
T ss_pred CCCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHH-------H----HHHH-----HHcCCcEEe
Confidence 45789999986 99999999999999999999999999999876432100 0 0000 011333332
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhh-------hhcCCeEEEecCC
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLR-------EVQCDGAVLVTTP 154 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~-------~~~ad~viiv~~~ 154 (192)
... ... ...-..+.+...+. .+||+||+|+|+....... ..+..+. ....|.+++|+++
T Consensus 165 ~~s-~~~----------~~~v~~~al~~a~~-~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda 232 (306)
T 1vma_A 165 HSE-GAD----------PAAVAFDAVAHALA-RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDA 232 (306)
T ss_dssp CST-TCC----------HHHHHHHHHHHHHH-TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEG
T ss_pred cCC-ccC----------HHHHHHHHHHHHHh-cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEC
Confidence 110 000 11111122222233 7999999999987543321 1111111 2247888888877
Q ss_pred CcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 155 QAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
. ...+.+... +.+.+ ..++.|+|+|+++..
T Consensus 233 ~-t~~~~l~~a-~~~~~-~~~i~gvVlTk~D~~ 262 (306)
T 1vma_A 233 T-TGQNGLVQA-KIFKE-AVNVTGIILTKLDGT 262 (306)
T ss_dssp G-GHHHHHHHH-HHHHH-HSCCCEEEEECGGGC
T ss_pred C-CCHHHHHHH-HHHHh-cCCCCEEEEeCCCCc
Confidence 5 333334333 33433 256789999999864
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.39 E-value=3.2e-12 Score=97.67 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=87.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
+.+++++|+|. +|+||||++.+||..++. +|++|+++|+|++++.....+.. +. ...++.+.
T Consensus 103 ~~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~----~~------------~~~gl~~~ 165 (296)
T 2px0_A 103 IHSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT----YA------------ELLQAPLE 165 (296)
T ss_dssp CCSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH----HH------------TTTTCCCC
T ss_pred CCCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH----HH------------HhcCCCeE
Confidence 35678999876 799999999999999996 89999999999875432111100 00 00111111
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhhh-hcCCeEEEecCCCcccH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLRE-VQCDGAVLVTTPQAVSI 159 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~~-~~ad~viiv~~~~~~~~ 159 (192)
.. .....++..+..+ .+||+||+|+++....... ..+..+.. ...+.+++|++.. ...
T Consensus 166 ~~----------------~~~~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~ 226 (296)
T 2px0_A 166 VC----------------YTKEEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKY 226 (296)
T ss_dssp BC----------------SSHHHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCH
T ss_pred ec----------------CCHHHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCH
Confidence 00 0112245555544 4899999999987654321 11222211 1245666666443 334
Q ss_pred HHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 160 EDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.++.+.+. .++..++|+|+++..
T Consensus 227 ~~~~~~~~~~~--~l~~~giVltk~D~~ 252 (296)
T 2px0_A 227 EDMKHIVKRFS--SVPVNQYIFTKIDET 252 (296)
T ss_dssp HHHHHHTTTTS--SSCCCEEEEECTTTC
T ss_pred HHHHHHHHHHh--cCCCCEEEEeCCCcc
Confidence 55555555554 355679999999864
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.33 E-value=3.7e-12 Score=99.73 Aligned_cols=152 Identities=16% Similarity=0.109 Sum_probs=80.7
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
...+|+++ +++|+||||++.+|+..++..|++|+++|+|++.+.....+ +.+ ...... ....+++.+.+.
T Consensus 78 ~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~------l~d-~~~~~~--~~~~~~~~i~~~ 147 (355)
T 3p32_A 78 NAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSI------LGD-KTRMAR--LAVHPNAYIRPS 147 (355)
T ss_dssp CSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------------CHH--HHTCTTEEEECC
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchh------ccc-hhhHHh--hccCCCeeEEEC
Confidence 44566665 67999999999999999999999999999998865211000 000 000000 011234444432
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHH
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRK 164 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~ 164 (192)
+..... .......++.+..+....||++|+|+|+.... ....+. .+|.+++|++++..... ..
T Consensus 148 ~~~~~~---------~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~-~~~~~~-----~aD~vl~V~d~~~~~~~--~~ 210 (355)
T 3p32_A 148 PTSGTL---------GGVTRATRETVVLLEAAGFDVILIETVGVGQS-EVAVAN-----MVDTFVLLTLARTGDQL--QG 210 (355)
T ss_dssp C--CCH---------HHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH-HHHHHT-----TCSEEEEEEESSTTCTT--TT
T ss_pred CCCccc---------cchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH-HHHHHH-----hCCEEEEEECCCCCccH--HH
Confidence 211000 01122223333333336899999999975443 323333 49999999987654221 11
Q ss_pred HHHHhHhcCCceeeEEeccCcc
Q psy9977 165 EITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 165 ~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+...+. ..+ ..+|+||.|.
T Consensus 211 l~~~~~--~~p-~ivVlNK~Dl 229 (355)
T 3p32_A 211 IKKGVL--ELA-DIVVVNKADG 229 (355)
T ss_dssp CCTTSG--GGC-SEEEEECCCG
T ss_pred HHHhHh--hcC-CEEEEECCCC
Confidence 111111 123 3599999985
No 50
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.08 E-value=6.3e-10 Score=86.61 Aligned_cols=152 Identities=16% Similarity=0.123 Sum_probs=78.3
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCc-ccCCCCCCccccCCCCcccccCCCCceEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPH-LLNIENSDVHQCPEGWVPVYTDASQTLAVM 82 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (192)
+...+|+++ +++|+||||+..+|+..+...|.+|.+++.|++.+.... .++... ..... ...++..+.
T Consensus 54 ~~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~--------~~~~~--~~~~~~~i~ 122 (341)
T 2p67_A 54 GNTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKT--------RMNDL--ARAEAAFIR 122 (341)
T ss_dssp SCSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------------CTT--TTCTTEEEE
T ss_pred CCCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccc--------hHHhh--ccCCCceee
Confidence 355778887 599999999999999999999999999999998653211 111100 00000 001111111
Q ss_pred eeccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHH
Q psy9977 83 SIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDV 162 (192)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~ 162 (192)
+ .+.... .+......++.+. .+.+..|+++|+|+|+...... .. .. .+|.+++|+++.... ..
T Consensus 123 ~------~~~~~~--l~g~~~~~~~~~~-~~~~~~~~i~liDTpG~~~~~~-~~-~~----~aD~vl~Vvd~~~~~--~~ 185 (341)
T 2p67_A 123 P------VPSSGH--LGGASQRARELML-LCEAAGYDVVIVETVGVGQSET-EV-AR----MVDCFISLQIAGGGD--DL 185 (341)
T ss_dssp E------ECC-------CHHHHHHHHHH-HHHHTTCSEEEEEEECCTTHHH-HH-HT----TCSEEEEEECC--------
T ss_pred c------Cccccc--cchhHHHHHHHHH-HhhccCCCEEEEeCCCccchHH-HH-HH----hCCEEEEEEeCCccH--HH
Confidence 1 110000 0011112222222 2222689999999998765433 22 23 599999999986431 11
Q ss_pred HHHHHHhHhcCCceeeEEeccCcc
Q psy9977 163 RKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 163 ~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+... ..+.+. -+|+||.|.
T Consensus 186 ~~l~~~--~~~~p~-ivv~NK~Dl 206 (341)
T 2p67_A 186 QGIKKG--LMEVAD-LIVINKDDG 206 (341)
T ss_dssp CCCCHH--HHHHCS-EEEECCCCT
T ss_pred HHHHHh--hhcccC-EEEEECCCC
Confidence 110001 112333 489999985
No 51
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.97 E-value=1.1e-09 Score=79.76 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=41.0
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
+.++...|+++|||+||||++.++|..++++|++|+++|+|+++.
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 456777899999999999999999999999999999999999743
No 52
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.86 E-value=1.2e-08 Score=79.02 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=97.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
..+.++++++-.++||||++..|.+.+.++|+++.++-.-.. +. +. ....-.++
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqt--g~--~~------------------~~~gi~~D---- 204 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQT--GV--ML------------------EGDGVALD---- 204 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHH--HH--HH------------------HSCSCCGG----
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccch--hh--hh------------------hcCCcchh----
Confidence 478999999999999999999999999999999988432111 00 00 00000000
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH-HHHHhhhhcCCeEEEecCCCcccH----
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT-VMECLREVQCDGAVLVTTPQAVSI---- 159 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~-~l~~~~~~~ad~viiv~~~~~~~~---- 159 (192)
... -......++++...+. ++||+|+|...+++-.+... .+.-+...+.|.+|++..++...+
T Consensus 205 ---------av~--~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~ 272 (349)
T 2obn_A 205 ---------AVR--VDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNP 272 (349)
T ss_dssp ---------GSB--HHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCT
T ss_pred ---------HHH--HHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCC
Confidence 000 0011235566666665 68999999999876543210 122222336799999999988877
Q ss_pred -------HHHHHHHHHhHh-----cCCceeeEEeccCcc
Q psy9977 160 -------EDVRKEITFCKK-----TNIKILGLIENMSGY 186 (192)
Q Consensus 160 -------~~~~~~~~~l~~-----~~~~~~g~v~N~~~~ 186 (192)
++...+++.++. .++++.|+++|.++.
T Consensus 273 ~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~ 311 (349)
T 2obn_A 273 HVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHL 311 (349)
T ss_dssp TSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTS
T ss_pred ccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 888888888865 789999999998764
No 53
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.81 E-value=1.2e-07 Score=81.77 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=48.3
Q ss_pred CCcEEEEeCCCCCChh-----HHHHHHHhhhhcCC-eEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 117 DVDYLIIDTPPGTSDE-----HITVMECLREVQCD-GAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~-----~~~~l~~~~~~~ad-~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
++|++||++.+++... ...-+.. ..+ -||+|++.+..++..+.-.++.++..++++.|+|+|+.+
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~----~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~ 271 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYR----PFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG 271 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTG----GGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc
Confidence 7999999998754321 1111222 122 378889999999999999999999889999999999875
No 54
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.71 E-value=1.4e-07 Score=72.91 Aligned_cols=151 Identities=20% Similarity=0.212 Sum_probs=84.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
+.+.+++++++ .|+||||+...||..+...|.+|++++.|..+.+....+ . ......++.++.
T Consensus 127 ~~g~vi~lvG~-nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql--------------~--~~~~~~gv~~v~ 189 (328)
T 3e70_C 127 EKPYVIMFVGF-NGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQL--------------E--EHAKRIGVKVIK 189 (328)
T ss_dssp CSSEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHH--------------H--HHHHHTTCEEEC
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHH--------------H--HHHHHcCceEEe
Confidence 35678888855 889999999999999999999999999998754321000 0 000011222222
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCCh--hHHHHHHHh-hhhcCCeEEEecCCCcccHH
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSD--EHITVMECL-REVQCDGAVLVTTPQAVSIE 160 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~--~~~~~l~~~-~~~~ad~viiv~~~~~~~~~ 160 (192)
.... .. ......+.+..... ..+|++++|+++.... .....+..+ .....|..+++.++... .
T Consensus 190 q~~~-~~----------p~~~v~e~l~~~~~-~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~ 255 (328)
T 3e70_C 190 HSYG-AD----------PAAVAYDAIQHAKA-RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--N 255 (328)
T ss_dssp CCTT-CC----------HHHHHHHHHHHHHH-HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--T
T ss_pred cccc-CC----------HHHHHHHHHHHHHh-ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--H
Confidence 1100 00 11111222222222 5899999999986542 111122111 01247888888875433 3
Q ss_pred HHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 161 DVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 161 ~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.+.+..+.+ ...+.++|+++.|-
T Consensus 256 ~~~~~~~~~~~-~~~it~iilTKlD~ 280 (328)
T 3e70_C 256 AIVEQARQFNE-AVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHHHHHH-HSCCCEEEEECGGG
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCcCC
Confidence 44444444442 23446899999885
No 55
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.63 E-value=2.2e-06 Score=69.32 Aligned_cols=152 Identities=17% Similarity=0.210 Sum_probs=82.0
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEe
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMS 83 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 83 (192)
+.+.+|+++| .+|+||||+...||..+...|.+|++.+.|..+..... .+. .+. ...++.++.
T Consensus 291 ~~GeVI~LVG-pNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e-------QL~----~~~-----~r~~I~vV~ 353 (503)
T 2yhs_A 291 KAPFVILMVG-VNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE-------QLQ----VWG-----QRNNIPVIA 353 (503)
T ss_dssp CTTEEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH-------HHH----HHH-----HHHTCCEEC
T ss_pred cCCeEEEEEC-CCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH-------HHH----HHH-----HhcCceEEe
Confidence 3567888884 57999999999999999988999999998876421000 000 000 001122221
Q ss_pred eccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH--HHHHHhh-------hhcCCeEEEecCC
Q psy9977 84 IGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI--TVMECLR-------EVQCDGAVLVTTP 154 (192)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~--~~l~~~~-------~~~ad~viiv~~~ 154 (192)
... .. .....+.+.+.......||+||+|+.+....... .-+..+. ....+.++++.++
T Consensus 354 Q~~-----~~-------~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDa 421 (503)
T 2yhs_A 354 QHT-----GA-------DSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421 (503)
T ss_dssp CST-----TC-------CHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred ccc-----Cc-------CHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecC
Confidence 110 00 0112222322222226899999999987643221 1111111 1124567778776
Q ss_pred CcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 155 QAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
... .+.+ ..++.+.+ .+.+.++|+++.|..
T Consensus 422 ttG-q~al-~~ak~f~~-~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 422 STG-QNAV-SQAKLFHE-AVGLTGITLTKLDGT 451 (503)
T ss_dssp GGT-HHHH-HHHHHHHH-HTCCSEEEEECGGGC
T ss_pred ccc-HHHH-HHHHHHHh-hcCCCEEEEEcCCCc
Confidence 532 2322 33444443 233568999998864
No 56
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.59 E-value=5.3e-08 Score=77.62 Aligned_cols=53 Identities=30% Similarity=0.301 Sum_probs=49.0
Q ss_pred CCcEEEEEEeCCC---CccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC
Q psy9977 4 GVKHVILVLSGKG---GVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS 59 (192)
Q Consensus 4 ~~~~~i~~~s~~g---g~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~ 59 (192)
+..|+|.|+|... |.||||++.|||..|++.|+||+++ .++|++...||....
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKGG 110 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCCC
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCCC
Confidence 4679999999999 9999999999999999999999998 899999999987754
No 57
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.49 E-value=2.1e-06 Score=65.65 Aligned_cols=43 Identities=30% Similarity=0.308 Sum_probs=37.7
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
.+.++++++ .+|+||||+...||..+...+.+|++.+.|..+.
T Consensus 101 ~g~vi~lvG-~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 101 KGRVVLVVG-VNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 143 (304)
T ss_dssp SSSEEEEEC-STTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh
Confidence 567899995 5899999999999999999899999999997653
No 58
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.33 E-value=3.2e-06 Score=60.23 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=33.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.|.++.+.| .||||+|..+|...+.+|+||+++-+.-
T Consensus 30 ~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 30 IIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 566776887 9999999999999999999999997764
No 59
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=98.27 E-value=2.1e-05 Score=61.00 Aligned_cols=141 Identities=21% Similarity=0.213 Sum_probs=89.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCCCccccCCCCcccccCCCCceEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVPVYTDASQTLAVMSI 84 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 84 (192)
..+.|+++++-.++|||+++..|.+.+.++|+++.++-..... .+.+.+ .-++.
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg----~li~~~----------------------~gv~~ 221 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTG----ILIGAD----------------------AGYVI 221 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHH----HHTTCS----------------------EECCG
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCcee----eeeccC----------------------CCCCC
Confidence 4789999999999999999999999999999999885433221 000000 00000
Q ss_pred ccccccCCcccccCCchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHHH--HHHHhhhhcCCeEEEecCCC-------
Q psy9977 85 GFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHIT--VMECLREVQCDGAVLVTTPQ------- 155 (192)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~~--~l~~~~~~~ad~viiv~~~~------- 155 (192)
... . -......++.++.....+++|++|+..++++..+... .+..+...+.|.+|+.-++.
T Consensus 222 ----D~~-~-----~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~ 291 (350)
T 2g0t_A 222 ----DAV-P-----ADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESF 291 (350)
T ss_dssp ----GGS-B-----GGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTC
T ss_pred ----Cce-e-----cchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCC
Confidence 000 0 0011222333333331279999999999887655422 22222234789999977654
Q ss_pred ----c-ccHHHHHHHHHHhHhcCCceeeEE-ecc
Q psy9977 156 ----A-VSIEDVRKEITFCKKTNIKILGLI-ENM 183 (192)
Q Consensus 156 ----~-~~~~~~~~~~~~l~~~~~~~~g~v-~N~ 183 (192)
. .+++...++++.+. +.+++|++ +|.
T Consensus 292 ~~~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 292 PEIPKKPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp TTSSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 2 56777777777776 78999999 994
No 60
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.26 E-value=4.1e-05 Score=59.60 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=35.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
..+|+++ |..|+||||+.-.|+..+...+.+|.++..|++..
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 4567777 88899999999999999998999999999998864
No 61
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=98.25 E-value=4e-06 Score=68.58 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=95.9
Q ss_pred cEEEEEE-eCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC------CCCC----cccCCCCCCc----cccCCCCcc
Q psy9977 6 KHVILVL-SGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG------PSVP----HLLNIENSDV----HQCPEGWVP 70 (192)
Q Consensus 6 ~~~i~~~-s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~------~~~~----~~~~~~~~~~----~~~~~~~~~ 70 (192)
+|.|+|+ +..+++|||++++.|++.|.++|++|..+-.||.- -+.. .+.-.+..+. .... .+.+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~~~~~-~~~~ 81 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYE-RFIR 81 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHHHH-HHCS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCCCCccCcccCCCeEECCCCCeehhhhccce-eeec
Confidence 5889999 99999999999999999999999999999887332 1111 0010111110 0000 0000
Q ss_pred cccCCCCceEEEeeccccccCCcc----cccC-----CchhHHHHHHHHHhhcCCCCcEEEEeCCCCCChhHH----HHH
Q psy9977 71 VYTDASQTLAVMSIGFLLKNRDDA----IIWR-----GPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHI----TVM 137 (192)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~~~~----~~~~-----~~~~~~~l~~~l~~l~~~~~D~IiiD~~~~~~~~~~----~~l 137 (192)
...+...+ +..|.....-... .-+. -+.....+.+.+..+. ++||+||+..++...+-.. ..+
T Consensus 82 ~~l~~~~~---~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~i~e~~gt~~di~~~~~~~~~ 157 (545)
T 1s1m_A 82 TKMSRRNN---FTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGG-EGHDVVLVEIGGTVGDIESLPFLEAI 157 (545)
T ss_dssp SCCCGGGE---EEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHH-TTCSEEEEEECSCTTSSTTHHHHHHH
T ss_pred eeecCCCC---eeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHh-ccCCEEEEECCCChhhhhChHHHHHH
Confidence 11111111 2333333220000 0000 1233455677777777 7999999999988765332 222
Q ss_pred HHhh--hhcCCe-----EEEec--CCCcccHHHHHHHHHHhHhcCCceeeEEecc
Q psy9977 138 ECLR--EVQCDG-----AVLVT--TPQAVSIEDVRKEITFCKKTNIKILGLIENM 183 (192)
Q Consensus 138 ~~~~--~~~ad~-----viiv~--~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~ 183 (192)
..+. ...-+. .++|. ..+...-.-++.-.+.++..|+...++|+..
T Consensus 158 ~q~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R~ 212 (545)
T 1s1m_A 158 RQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRS 212 (545)
T ss_dssp HHHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEEE
T ss_pred HHHhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEeC
Confidence 2222 111122 12222 2344445678888999999999988888754
No 62
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=98.25 E-value=3e-06 Score=69.34 Aligned_cols=176 Identities=11% Similarity=0.186 Sum_probs=98.0
Q ss_pred CcEEEEEE-eCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC------CCCC----cccCCCCCCc----cccCCCCc
Q psy9977 5 VKHVILVL-SGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG------PSVP----HLLNIENSDV----HQCPEGWV 69 (192)
Q Consensus 5 ~~~~i~~~-s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~------~~~~----~~~~~~~~~~----~~~~~~~~ 69 (192)
++|.|+|+ +..+++||+++++.|++.|.++|++|..+-.||.- -+.. .+.-.+..+. ..+. .+.
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~~~-~~~ 89 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYE-RFL 89 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHH-HHH
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccCccccCcccCCceEECCCCceehhhhccHH-hcC
Confidence 46889999 89999999999999999999999999999887432 1111 0000011110 0000 111
Q ss_pred ccccCCCCceEEEeeccccccCC------ccc---ccCCchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhHHH----
Q psy9977 70 PVYTDASQTLAVMSIGFLLKNRD------DAI---IWRGPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEHIT---- 135 (192)
Q Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~~------~~~---~~~~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~~~---- 135 (192)
+...+...+ +..|..+..-. +.. ..--+.....+.+.+..+. +.+||++|+..++...+-...
T Consensus 90 ~~~l~~~~~---~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~i~e~~gt~~di~~~~~~~ 166 (550)
T 1vco_A 90 DMDLSRGNN---LTTGQVYLSVIQKERRGEYLSQTVQVIPHITDEIKERIRKVAEEQKAEIVVVEVGGTVGDIESLPFLE 166 (550)
T ss_dssp TSCCCGGGE---EEHHHHHHHHHHHHHTTTTTTCCCCTTTHHHHHHHHHHHHHHHHTTCSEEEEEECSCTTSSTTHHHHH
T ss_pred CcccCCCCC---eeccEEchhhhhhhcccccccCceEEhhHHHHHHHHHHHHHhcccCCCEEEEECCCChhHhhhHHHHH
Confidence 111111222 23333332200 000 0012344556667777766 128999999999887664332
Q ss_pred HHHHhh--hhcCCe-----EEEe--cCCCcccHHHHHHHHHHhHhcCCceeeEEeccC
Q psy9977 136 VMECLR--EVQCDG-----AVLV--TTPQAVSIEDVRKEITFCKKTNIKILGLIENMS 184 (192)
Q Consensus 136 ~l~~~~--~~~ad~-----viiv--~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~ 184 (192)
.+..+. ...-+. .++| -..+...-.-++...+.++..++...++|+...
T Consensus 167 ~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR~~ 224 (550)
T 1vco_A 167 AIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRSA 224 (550)
T ss_dssp HHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEEES
T ss_pred HHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEeCC
Confidence 222222 111122 2222 223455556778888999999999888887643
No 63
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.20 E-value=7.6e-07 Score=64.54 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=33.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..++|+++ |.+|+||||+..+|+..+... +++.+++.|+.
T Consensus 29 ~~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 29 GTVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp TCEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 45667777 688999999999999998665 89999998875
No 64
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.13 E-value=2.2e-05 Score=66.54 Aligned_cols=66 Identities=21% Similarity=0.103 Sum_probs=49.8
Q ss_pred CCCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..|++.|+|+|+..+. .....+. .+|.+++|+++.......+...+..+...+++.+ +++||.|..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~-----~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~ 147 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMR-----VLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRM 147 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHH-----HCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCcc
Confidence 5699999999986542 2222333 3999999999987666677777777777888876 899999863
No 65
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.10 E-value=7.2e-06 Score=67.30 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=49.1
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+...... .....+ ..+|.+++|+++..........+++.+...+++++ +++||.|..
T Consensus 80 ~~~~i~liDTPG~~df~~-~~~~~l--~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipii-vviNK~Dl~ 147 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSE-DTYRTL--TAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPIL-TFMNKLDRD 147 (529)
T ss_dssp TTEEEEEECCCCSTTCCH-HHHHGG--GGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEE-EEEECTTSC
T ss_pred CCeEEEEEECCCChhHHH-HHHHHH--HHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEE-EEEcCcCCc
Confidence 478899999997643221 222222 24999999999877666667777777777788865 999999964
No 66
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.07 E-value=6.4e-06 Score=57.46 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=35.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+++++++|++ ..|+||||++..|+..|.++|++|.++..|+.
T Consensus 2 ~~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 2 NAMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp --CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4578888887 56999999999999999999999999998865
No 67
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.07 E-value=9.4e-05 Score=53.88 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=31.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.++.|.-|+||||++..++..+..+|++|+++...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 4556668889999999999999999999999999543
No 68
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.05 E-value=0.00027 Score=55.14 Aligned_cols=43 Identities=33% Similarity=0.337 Sum_probs=37.2
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.+.++++++ ..|+||||+...||..+...+.+|++.+.|..+
T Consensus 155 ~~g~vi~lvG-~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 155 RKPAVIMIVG-VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSEEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCeEEEEEc-CCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 3567888885 589999999999999999889999999988764
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.04 E-value=0.00022 Score=54.32 Aligned_cols=43 Identities=33% Similarity=0.337 Sum_probs=37.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.+.+++++| ..|+||||+...||..+...+.+|++.+.|..+
T Consensus 98 ~~g~vi~lvG-~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 98 RKPAVIMIVG-VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SSCEEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCcEEEEEc-CCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 3567888885 589999999999999999889999999988764
No 70
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.01 E-value=6.2e-05 Score=58.32 Aligned_cols=42 Identities=33% Similarity=0.378 Sum_probs=35.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
...+++++ |..|+||||+.-.|+..+...+.+|.++..|+..
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 45677777 7788999999999999998888999999999764
No 71
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.93 E-value=0.00019 Score=56.87 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=49.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+.... .......+ ..+|.+++|+++.........+.+..+...+++.+-+++||.|..
T Consensus 73 ~~~~~~iiDtpG~~~f-~~~~~~~~--~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCPGHADY-IKNMITGA--AQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECCCSGGG-HHHHHHHH--TTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHH-HHHHHHHH--HHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 4678999999865432 22222222 259999999998776667777888888888888445899999864
No 72
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.87 E-value=0.00053 Score=52.32 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=45.4
Q ss_pred CCcEEEEeCCCCCChh------------HHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHhcCCceeeEEecc
Q psy9977 117 DVDYLIIDTPPGTSDE------------HITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCKKTNIKILGLIENM 183 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~------------~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~g~v~N~ 183 (192)
.+.++++|+|+..... ....+. .+|.+++|+++... +.......++.++..+.+++ +|+||
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~-----~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK 131 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLE-----EADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINK 131 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHH-----HCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEEC
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhh-----cCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEEC
Confidence 6789999999865422 112222 49999999998754 44444434788888788766 99999
Q ss_pred CccC
Q psy9977 184 SGYT 187 (192)
Q Consensus 184 ~~~~ 187 (192)
.|..
T Consensus 132 ~Dl~ 135 (308)
T 3iev_A 132 IDKI 135 (308)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9864
No 73
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.84 E-value=3.1e-05 Score=63.82 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=55.9
Q ss_pred CCCcEEEEeCCCCC--ChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGT--SDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~--~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
++|-+=|||||+-. ..+....+.. +|.+++|+++...-..++..+++.+.+.++|.+ +++||.|..
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~-----~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~ 165 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTA-----VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDRE 165 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHS-----CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHh-----cCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccch
Confidence 57888999999754 3444455655 999999999999999999999999999999987 999999973
No 74
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.80 E-value=0.00011 Score=57.57 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=34.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..++.|+ +..|+||||++.++|..+++.|.+|++||++..
T Consensus 74 G~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3456665 778899999999999999999999999999954
No 75
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.76 E-value=0.001 Score=47.17 Aligned_cols=37 Identities=22% Similarity=0.065 Sum_probs=30.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
..++ .++.+.-|+||||.+..+++.+..+|++|+++-
T Consensus 7 ~g~i-~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWV-EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEE-EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEE-EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3444 455566679999999999999999999999996
No 76
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.73 E-value=0.0002 Score=56.67 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+... ........ ...+|.+++|+++......++.+.+..++..+++.+-+++||.|..
T Consensus 64 ~~~~~~iiDtpG~~~-f~~~~~~~--~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPGHAD-YVKNMITG--TAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSSHHH-HHHHHHHT--SSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHH-HHHHHHhh--HhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 468899999986432 22222222 2369999999998876666777777777778888555899999864
No 77
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.68 E-value=0.00038 Score=58.97 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=48.7
Q ss_pred CCCcEEEEeCCCCCC--hhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTS--DEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~--~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+..+ ......+.. +|.+++|+++...........+..+...+.+++ +++||.|..
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~-----aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~ 140 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRV-----LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKL 140 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHH-----CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTST
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHH-----CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 367899999998653 233333443 999999999876555566667777777888876 999999863
No 78
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=97.67 E-value=0.00043 Score=50.76 Aligned_cols=177 Identities=12% Similarity=0.099 Sum_probs=94.1
Q ss_pred CCcEEEEEEeCC-CCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccC---------CCCCC-ccccCCCCcccc
Q psy9977 4 GVKHVILVLSGK-GGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLN---------IENSD-VHQCPEGWVPVY 72 (192)
Q Consensus 4 ~~~~~i~~~s~~-gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~ 72 (192)
+.||-|.|+++- +|.||-.+|+.++..|..+|++|..+-.||.-.-=+-.+. .++.. ........+-..
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD~GTMsP~qHGEVfVtdDG~EtDLDLGhYERFl 100 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFL 100 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCCC-------------------------------
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeecCCCCCccccceEEEecCCccccccccchhhhc
Confidence 357889999887 9999999999999999999999999999865310000000 00000 000011111111
Q ss_pred cCCCCceEEEeeccccccC----CcccccC-----CchhHHHHHHHHHhhcC-------CCCcEEEEeCCCCCChh----
Q psy9977 73 TDASQTLAVMSIGFLLKNR----DDAIIWR-----GPKKTAMIRQIINDVCW-------KDVDYLIIDTPPGTSDE---- 132 (192)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~----~~~~~~~-----~~~~~~~l~~~l~~l~~-------~~~D~IiiD~~~~~~~~---- 132 (192)
......-.-++.|..+..- +....+. -|+....+++.+....+ ..+|++|++.++..++-
T Consensus 101 ~~~lt~~nNiTtGkIY~~VI~KERrGdYLGkTVQVIPHiTdeIk~~I~~~a~~pvd~~~~~~Dv~IiEiGGTVGDIES~P 180 (294)
T 2c5m_A 101 DIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMP 180 (294)
T ss_dssp ----CCTTEEEHHHHHHHHHHHHHTSCSCSSCCCTTTHHHHHHHHHHHHHTTCC------CCSEEEEEECSCTTCSTTHH
T ss_pred CCCCcccccccHHHHHHHHHHHHhcCCcCCceeEEcCCchHHHHHHHHHHhcCCccccCCCCCEEEEEeCCcchhhcccH
Confidence 1112222223333332210 0000001 14556777777776652 58999999999987653
Q ss_pred HHHHHHHhhh--hcCCeE-----EEec--CCCcccHHHHHHHHHHhHhcCCceeeEE
Q psy9977 133 HITVMECLRE--VQCDGA-----VLVT--TPQAVSIEDVRKEITFCKKTNIKILGLI 180 (192)
Q Consensus 133 ~~~~l~~~~~--~~ad~v-----iiv~--~~~~~~~~~~~~~~~~l~~~~~~~~g~v 180 (192)
+..++..+.. ..-+.. ++|. ..+...-.-++..++.|+..|+...-++
T Consensus 181 FlEAiRQ~~~~~g~~n~~~iHvtlVP~i~~~gE~KTKPTQhSVk~Lr~~Gi~PDiiv 237 (294)
T 2c5m_A 181 FIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVV 237 (294)
T ss_dssp HHHHHHTTTTTSCTTTEEEEEEEECCCCTTTCSCCCHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCCcHHHHHHHHHcCCCCCEEE
Confidence 3333333321 111222 2222 2245566778889999999998876343
No 79
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.66 E-value=0.00045 Score=54.15 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=48.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEec-cCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIEN-MSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N-~~~~ 186 (192)
+.+.+.|+|+|+...... .....+ ..+|.+++|++ +.....++.+.+..++..+++..-+++| |.|.
T Consensus 58 ~~~~i~iiDtPGh~~f~~-~~~~~~--~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLK-SLITAL--NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHH-HHHHHH--HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHH-HHHHHH--HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 466799999997654322 222222 25999999999 7777778888888888888887458888 8885
No 80
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.65 E-value=0.00053 Score=52.17 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=43.7
Q ss_pred CCCcEEEEeCCCCCChh-------HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDE-------HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~-------~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
..+.++++|+|+..... .......+ ..+|.+++|++....--.....+++.+++. +.+++ +|+||.|.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l--~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i-lV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL--ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDA 129 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT--SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHH--hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE-EEEECccc
Confidence 46678999999865421 11111222 368999999988643223335566777766 67765 99999986
Q ss_pred C
Q psy9977 187 T 187 (192)
Q Consensus 187 ~ 187 (192)
.
T Consensus 130 ~ 130 (301)
T 1wf3_A 130 A 130 (301)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.64 E-value=0.00028 Score=48.13 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh--cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK--TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~--~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+.... .....+. .+|.+++|.+.. ..+.+.+...++.+.. .+.+++ +|+||.|..
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYR-----GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-LVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHT-----TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE-EEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhc-----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccC
Confidence 567899999873321 1112222 489999988876 3456666666665543 256655 999999853
No 82
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.64 E-value=0.00036 Score=59.06 Aligned_cols=66 Identities=24% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+..+. .....+.. +|.+++|+++...........+..+...+++.+ +++||.|..
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~-----aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 142 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRV-----LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKT 142 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHH-----CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTST
T ss_pred CCeEEEEEECcCccchHHHHHHHHHH-----CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 3688999999986542 22223333 999999999887666666677777777888876 999999964
No 83
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.64 E-value=0.00083 Score=45.42 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~~ 187 (192)
..+++.++|+|+...... ...+. .+|.+++|.+.. ..+...+...++.+... +.+++ +|+||.|..
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~nK~Dl~ 121 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMR-----TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV-LVGNKSDLA 121 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHH-----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCS
T ss_pred EEEEEEEEECCCchhhhHHHHHhhc-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEchhhh
Confidence 357889999998653222 22233 389988888775 44556666666655532 56655 999999853
No 84
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.63 E-value=0.00095 Score=56.73 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=54.3
Q ss_pred CCCcEEEEeCCCCCC--hhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTS--DEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~--~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
++|-+=|||+|+-.+ .+....+.. +|.+++|+++...-..++..++++..+.+++.+ +++||.|..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~-----~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRV-----LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHH-----CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHH-----hCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEcccccc
Confidence 356778999997654 333445555 999999999999989999999999999999987 999999973
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.60 E-value=0.0001 Score=51.85 Aligned_cols=40 Identities=38% Similarity=0.586 Sum_probs=33.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++.|.+ .|..|+||||++..||..+...|.++.++|.|..
T Consensus 13 ~~~i~l-~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWL-TGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 345555 4889999999999999999999999999998754
No 86
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.59 E-value=0.0017 Score=43.88 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=38.9
Q ss_pred CCcEEEEeCCCCCCh----h-HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSD----E-HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~----~-~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
...+.++|+|+.... . ....... ....+|.++++.+....--.....+.+.+++.+.+++ +|.||.|.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDR-ALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI-LVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHH-HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEE-EEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHH-HHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEE-EEEECccc
Confidence 346788888875541 1 1111111 0125888888888765322223445556666677755 89999875
No 87
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.54 E-value=0.00077 Score=50.06 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=44.4
Q ss_pred CCcEEEEeCCCCCChhHH-------H-H-HHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHI-------T-V-MECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~-------~-~-l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+..+.|+|+|+....... . . -..+....+|.+++|++... .+....+...+...+.|++ +++||.|.
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvi-lv~NK~Dl 122 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVV-VALNMMDI 122 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEE-EEEECHHH
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 457899999986433210 1 1 11121246999999998875 5556667777777788866 99999874
No 88
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.52 E-value=3.4e-05 Score=55.64 Aligned_cols=34 Identities=35% Similarity=0.447 Sum_probs=25.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.|.-|+++ |.-|+||||++..|+ +.|.+| +|+|.
T Consensus 8 ~~~~iglT-GgigsGKStv~~~l~----~~g~~v--idaD~ 41 (210)
T 4i1u_A 8 HMYAIGLT-GGIGSGKTTVADLFA----ARGASL--VDTDL 41 (210)
T ss_dssp SCCEEEEE-CCTTSCHHHHHHHHH----HTTCEE--EEHHH
T ss_pred ceeEEEEE-CCCCCCHHHHHHHHH----HCCCcE--EECcH
Confidence 56778888 455699999997665 468776 88885
No 89
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.52 E-value=0.00013 Score=56.90 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=33.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++.++ +.+|+||||++.++|..+++.|.+|++||++..
T Consensus 64 ~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 64 RIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 444554 899999999999999999999999999999754
No 90
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=0.0014 Score=46.07 Aligned_cols=67 Identities=21% Similarity=0.165 Sum_probs=43.3
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
..+.+.++|+|+............ .+|.+++|.+.. ..+.+.+...++.+.. .+.+++ +|.||.|..
T Consensus 74 ~~~~~~l~Dt~G~~~~~~~~~~~~----~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~ 145 (196)
T 2atv_A 74 EVVSMEILDTAGQEDTIQREGHMR----WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKADLD 145 (196)
T ss_dssp EEEEEEEEECCCCCCCHHHHHHHH----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE-EEEECGGGG
T ss_pred EEEEEEEEECCCCCcccchhhhhc----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE-EEEECcccc
Confidence 356788999998665222222222 489999988876 4566666655555543 356655 999999863
No 91
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.49 E-value=0.0012 Score=45.10 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=41.8
Q ss_pred CCCcEEEEeCCCCCChhHHH--HHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHIT--VMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~--~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-----~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+........ .+. .+|.+++|.+.+ ..+.+.+...++.+.+ .+.+++ +|+||.|.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii-~v~nK~Dl 121 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSIS-----KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM-LVGNKCDE 121 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHH-----HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE-EEEECGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcc-----cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE-EEEEcccc
Confidence 35678999999865433211 222 489999988875 3455556666555543 256655 99999985
No 92
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.49 E-value=7.7e-05 Score=56.56 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+++..+|+++ |-.|+||||+|..|+..+...|.++.++|+|...
T Consensus 2 s~~~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 2 SKKHPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CTTSCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CCCceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3455677777 6778999999999999998888899999999654
No 93
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.49 E-value=0.0018 Score=43.83 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=40.5
Q ss_pred CCCcEEEEeCCCCCChhHH--HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHI--TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~--~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+....... ..+. .+|.+++|.+.. ..+...+...++.+.. .+.+++ +|+||.|.
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 121 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFR-----SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDL 121 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHH-----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE-EEEECGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhh-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccc
Confidence 3568899999975432221 1222 489988888776 4456666665555543 256655 99999986
No 94
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.47 E-value=0.0018 Score=44.42 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... ...+. .+|.+++|.+.. ..+.+.+..+++.+.. .+.+++ +|.||.|.
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 132 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYR-----GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII-LIGNKADL 132 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHH-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTC
T ss_pred EEEEEEEECCCChHhhhhHHHHhc-----cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccc
Confidence 56789999987432221 11222 489999988876 4455666666555553 355544 99999986
No 95
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.47 E-value=0.00015 Score=53.91 Aligned_cols=40 Identities=40% Similarity=0.461 Sum_probs=33.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++.|.+. |-.|+||||++..|+..|...|+.++++|.|..
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4556555 668999999999999999999999988888743
No 96
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.44 E-value=0.0012 Score=45.50 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCCChhHH-HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHI-TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~-~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+....... .... ..+|.+++|.+.. ..+.+.+...+..+... +.++ -+|.||.|.
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl 129 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYY----RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM-ALAGNKSDL 129 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHH----TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEeCCCChhhhhhhHHHh----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECCcc
Confidence 567899999975332211 1111 2489999998875 44567777777766653 4444 499999986
No 97
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.44 E-value=0.0022 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=17.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
....|+++ |..|+||||+...+.
T Consensus 22 ~~~~i~v~-G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 22 LKGEVAFV-GRSNVGKSSLLNALF 44 (195)
T ss_dssp TTCEEEEE-EBTTSSHHHHHHHHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHH
Confidence 34567777 678899999997763
No 98
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.42 E-value=0.00032 Score=49.05 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=35.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++++++|. +..|+||||+...|...+...|++|..+..++.
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 46677776 577999999999999999999999999998865
No 99
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.42 E-value=0.0029 Score=43.75 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCChhHH--HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHI--TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~--~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+....... ..+. .+|.+++|.+.. ..+...+...++.+.. .+.+++ +|+||.|.
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 135 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFR-----SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDL 135 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHH-----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE-EEEECGGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhc-----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 568899999975543221 1222 489988888776 4455666555555543 256655 99999985
No 100
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.40 E-value=0.0033 Score=43.87 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=39.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc----cHHHHHHHHHHhHh-----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV----SIEDVRKEITFCKK-----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~----~~~~~~~~~~~l~~-----~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+.......... . -..+|.+++|.+.... ..+....+.+.+.. .+.+++ +|.||.|.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~-~--~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii-lv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKL-I--LRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV-IQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHH-H--TTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE-EEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHH-H--HhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEE-EEEEchhc
Confidence 4567899999975433221111 1 1259999999998743 22333333333332 355555 99999985
No 101
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.40 E-value=0.002 Score=44.97 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=39.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
..+++.|+|+|+...... .... ....+|.+++|.+.. ..+...+..+++.+.. .+.+++ +|+||.|.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~--~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-lv~nK~Dl 138 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSA--MRDQ-YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV-LVGNKCDL 138 (190)
T ss_dssp EEEEEEEEECCC--------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTC
T ss_pred EEEEEEEEECCChHHHHH--HHHH-hhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECCcC
Confidence 357899999997543221 1111 112588888887765 4466666666666553 256655 99999985
No 102
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.40 E-value=0.0016 Score=44.54 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... ..+.......+|.+++|.+.+ ..+.+.+...+..+.+. +.+++ +|.||.|..
T Consensus 51 ~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pii-lv~NK~Dl~ 124 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDK-SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII-LVGNKADLA 124 (175)
T ss_dssp EEEEEEECCC--------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEE-EEEECTTCT
T ss_pred EEEEEEEecCCCCccch-hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEE-EEEEChhhc
Confidence 46788999986543111 111111122478888877765 55677777776666643 56655 999999863
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=0.00038 Score=50.30 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=33.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..+++++ +..|+||||++..++..++..|.+|++++.+..
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 3456665 778999999999999999888889999998754
No 104
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.39 E-value=0.00082 Score=47.58 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=42.3
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... ...+ ..+|.+++|.+.. ..+...+...+..+... +.+++ +|.||.|.
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 141 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFI-----IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV-LVGNKADL 141 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGT-----TTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE-EEEECTTC
T ss_pred EEEEEEEEECCCccchHHHHHHHH-----hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccC
Confidence 467889999997433211 1112 2489988888875 55667777777666543 56655 99999985
No 105
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.38 E-value=0.0002 Score=50.31 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=31.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|+.|++. |-.|+||||++..|+..+...|+++.+++.|
T Consensus 1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3556665 6678999999999999999899999999754
No 106
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.38 E-value=0.0024 Score=43.40 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+......... .. ...+|.+++|.+.. ..+...+...+..+.+. +.++ -+|.||.|.
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~-~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i-ilv~nK~Dl 123 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAP-MY--YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI-ALSGNKADL 123 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHH-HH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEECGGG
T ss_pred EEEEEEEeCCCcHHhhhhhH-Hh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccC
Confidence 56789999987543222111 11 12589999988875 44667777766666543 3433 377799985
No 107
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.37 E-value=0.0067 Score=42.39 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=41.5
Q ss_pred CcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-cCCceeeEEeccCc
Q psy9977 118 VDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-TNIKILGLIENMSG 185 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-~~~~~~g~v~N~~~ 185 (192)
+.+.|+|+|+..... ....+. .+|.+++|.+.. ..+...+...+..+.. .+.+ +-+|+||.|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~p-iilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYR-----GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-IILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHT-----TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCE-EEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhc-----CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCc-EEEEEECCC
Confidence 789999999743221 111222 599999999876 4456666666666654 4554 459999998
No 108
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.36 E-value=0.004 Score=42.14 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=41.5
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... ...+. .+|.+++|.+.. ..+.+.+...++.+.+ .+.+++ +|.||.|.
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 120 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMK-----NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDL 120 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHH-----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE-EEEECTTC
T ss_pred EEEEEEEEECCChHHHHHHHHHHhc-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE-EEEECccc
Confidence 456788999997543222 22233 389988888765 4456666655555543 356655 99999986
No 109
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.36 E-value=0.00077 Score=54.27 Aligned_cols=70 Identities=13% Similarity=0.049 Sum_probs=41.8
Q ss_pred CCCcEEEEeCCCCCC-----hhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTS-----DEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~-----~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
....+.|+|+|+... .............++|.+++|++....-...-.++.+.+++.+.+++ +|.||.|.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 456788899987431 11111111111125999999998765444455667777888788766 89999885
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.36 E-value=0.00024 Score=51.20 Aligned_cols=36 Identities=17% Similarity=-0.033 Sum_probs=30.6
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
.|-|+.+.=|+||||.+..++..+..+|++|+++-.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 455555777899999999999999999999999853
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.35 E-value=0.0013 Score=44.73 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=31.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.++++ +..|+||||++..++..+...|+++.+++..
T Consensus 37 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 37 QFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp SEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 455665 7789999999999999998889999888765
No 112
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.35 E-value=0.00067 Score=46.99 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhH----hcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCK----KTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~----~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... +.......+|.+++|.+.. ..+.+.+...++.+. ..+.+++ +|.||.|.
T Consensus 53 ~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 123 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSI---FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM-LVGNKKDL 123 (181)
T ss_dssp EEEEEEEECCCCCTTCC---CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE-EEEECTTC
T ss_pred EEEEEEEeCCCchhhhH---HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 56788999997543211 0000112489888887775 456666666555543 2356655 99999985
No 113
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.34 E-value=0.0023 Score=51.23 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=47.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccH-------HHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSI-------EDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.++|+|+|+.... .......+ ..+|.+++|++++.... ....+.+..+...+.+.+-+++||.|.
T Consensus 93 ~~~~~~iiDTPGh~~f-~~~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSF-VPNMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHH-HHHHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 4678999999975432 22232222 25999999999876543 366677777777888845599999985
No 114
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.33 E-value=0.0025 Score=44.70 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+....... ....+ ..+|.+++|.+.. ..+.+.+...++.++.. +.+++ +|.||.|.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~-~~~~~--~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lV~NK~Dl 143 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSI-TSAYY--RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL-LVGNKLDC 143 (192)
T ss_dssp EEEEEEEEECCSGGGHHH-HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGG
T ss_pred EEEEEEEeCCCcHHHHHH-HHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccc
Confidence 567899999975432221 11111 2489999988875 44666666666666543 45544 99999986
No 115
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.33 E-value=0.0041 Score=43.83 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCChhHH--HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHI--TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~--~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+....... ..+. .+|.+++|.+.. ..+...+...+..+.. .+.+++ +|+||.|.
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 131 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFR-----SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDL 131 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHH-----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTC
T ss_pred EEEEEEEcCCChhhhHHHHHHHHh-----hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccCc
Confidence 468899999975543221 1222 489888888765 4566666666665543 256655 99999986
No 116
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.31 E-value=0.0014 Score=54.47 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=45.1
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..|.+.|+|+|+..+... .....+ ..+|.+++|++............+......+++++ +++||.|..
T Consensus 71 ~~~~inliDTPGh~dF~~-ev~r~l--~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiI-vviNKiDl~ 138 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSY-EVSRAL--AACEGALLLIDASQGIEAQTVANFWKAVEQDLVII-PVINKIDLP 138 (600)
T ss_dssp CEEEEEEECCCCSGGGHH-HHHHHH--HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEE-EEEECTTST
T ss_pred CeEEEEEEECCCcHhHHH-HHHHHH--HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEE-EEEeccCcc
Confidence 357888999997654322 222222 24999999999876544445555555556788865 999999963
No 117
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.30 E-value=0.00027 Score=50.32 Aligned_cols=44 Identities=39% Similarity=0.308 Sum_probs=35.6
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
..+.+|+++ |-.|+||||++..||..+...|..+.++|.|....
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 345667766 77889999999999999998898888899875543
No 118
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.29 E-value=0.00025 Score=52.41 Aligned_cols=42 Identities=31% Similarity=0.294 Sum_probs=32.3
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhC-----CCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDK-----GFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-----g~~vlliD~d~~ 46 (192)
+.+.+|+++ |-.|+||||+|..|+..+... ++++.++|+|..
T Consensus 20 ~~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 20 GEPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 345566666 778899999999999877643 678999999854
No 119
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.29 E-value=0.0018 Score=44.59 Aligned_cols=67 Identities=16% Similarity=0.044 Sum_probs=38.3
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-------cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-------TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... .... ....+|.+++|.+.. ..+.+.+...++.+.. .+.+++ +|+||.|.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~--~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQS--LGVA-FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV-ILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC------------C-CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE-EEEECTTS
T ss_pred cEEEEEEEECCCChHhhh--hhHH-HhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEE-EEEECCcc
Confidence 456789999987432211 1111 123589999988765 4456666665555542 355554 99999986
No 120
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.29 E-value=0.002 Score=45.08 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+...... ...+. .+|.+++|.+.. ..+...+...++.+... +.+++ +|.||.|..
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~Dl~ 134 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYR-----GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLT 134 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHT-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCT
T ss_pred EEEEEEEECCCcHhhhhhHHHHHh-----hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccc
Confidence 46789999997432221 11222 589999988865 44566666666666543 55554 899999863
No 121
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.29 E-value=0.0026 Score=50.34 Aligned_cols=67 Identities=19% Similarity=0.156 Sum_probs=47.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCccc-HHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVS-IEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~-~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+.... .......+ ..+|.+++|++.+... ...+.+.+..++..+.+.+-+++||.|.
T Consensus 74 ~~~~~iiDtPGh~~~-~~~~~~~~--~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 74 LRRISFIDAPGHEVL-MATMLSGA--ALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEEECCCCGGG-HHHHHHHH--TTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cceEEEEECCCcHHH-HHHHHHHH--hhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 367899999974332 22333322 2599999999988654 7788888888887777555599999985
No 122
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.28 E-value=0.0058 Score=41.21 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCChhHH--HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHI--TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~--~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+....... ..+. .+|.++++.+.. ..+.+.+...+..+.+ .+.+++ +|+||.|.
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 120 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIK-----NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI-LVGNKVDL 120 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHH-----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhc-----cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCcc
Confidence 456889999975443221 1222 489888887765 4455666655554432 356655 99999985
No 123
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.28 E-value=0.0038 Score=43.74 Aligned_cols=65 Identities=20% Similarity=0.125 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... ...+. .+|.+++|.+.. ..+...+...++.+.+. +.+++ +|+||.|.
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~-----~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~NK~Dl 140 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYR-----GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA-IAGNKCDL 140 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHT-----TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhc-----cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECccc
Confidence 456789999997433221 11222 489999888775 45667777777766653 45544 99999986
No 124
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.28 E-value=0.00048 Score=49.13 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=34.7
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
.+.+|+++ |..|+||||++..|+..+...|.+|.+++.|...
T Consensus 21 ~~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 44566666 7788999999999999998889999999888553
No 125
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.27 E-value=0.00077 Score=51.58 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=31.5
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhC--CCeEEEEeeCCC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDK--GFKVGILDIDLC 46 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~--g~~vlliD~d~~ 46 (192)
..+.+..|+||||++..++..+++. |.+|++||....
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 4455678999999999999999886 889999998744
No 126
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.27 E-value=0.0027 Score=43.20 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=39.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+..... .+.......+|.+++|.+.. ..+...+...++.+.. .+.+++ +|.||.|.
T Consensus 53 ~~~~l~i~Dt~G~~~~~---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 123 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFH---ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC-IVGNKIDL 123 (170)
T ss_dssp CEEEEEEEECCCC----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE-EEEECGGG
T ss_pred EEEEEEEEECCCcHhhh---hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECccc
Confidence 35678889998743221 11111123589888888775 4456666666665543 355544 99999886
No 127
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.24 E-value=0.0038 Score=43.99 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=43.4
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+...... .... ....+|.+++|.+.. ..+...+..++..+.. .+.+++ +|.||.|..
T Consensus 56 ~~~~~l~Dt~G~~~~~~--~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~ 126 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRT--ITTA-YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL-LVGNKCDME 126 (203)
T ss_dssp EEEEEEEEECCSGGGHH--HHHT-TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEE-EEEECTTCT
T ss_pred EEEEEEEECCCchhhcc--hHHH-hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccC
Confidence 56789999987543221 2111 123589999988875 4466666776666665 355554 999999863
No 128
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.24 E-value=0.015 Score=39.14 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
..+.+.++|+|+...... .... ....+|.+++|.+.. ..+.......+..+.. .+.+++ +|.||.|.
T Consensus 42 ~~~~~~i~Dt~G~~~~~~--~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRP--LWRH-YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL-VFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHH--HHHH-HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTS
T ss_pred CCEEEEEEEcCCChhhHH--HHHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE-EEEECcCC
Confidence 357789999987643322 1111 112589999988875 4567777666655533 255554 99999986
No 129
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.23 E-value=0.0018 Score=54.85 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=41.5
Q ss_pred CcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 118 VDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
+++.|+|+|+..... .......+ ..+|.+++|++++. .+......+.+.+...+.++ -+|+||.|.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~i-iiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYV--NNCHAILFVMRASQPCTLGERRYLENYIKGRGLTV-FFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHH--HSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCE-EEEEECGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHH--HhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCE-EEEEECccc
Confidence 689999999743211 01111111 25999999998864 34444444445566667764 499999986
No 130
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.23 E-value=0.002 Score=51.60 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=48.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHH-------HHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIE-------DVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~-------~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+...... .....+ ..+|.+++|++....+.+ .+.+.+..+...+.+.+-+++||.|..
T Consensus 82 ~~~~~~iiDtpG~~~f~~-~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVK-NMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp SSCEEEECCCSSSTTHHH-HHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred CCeEEEEEECCCcHHHHH-HHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 578899999997654332 233332 369999999999876444 455666666667776555899999864
No 131
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.21 E-value=0.0011 Score=47.27 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHH-HHHHHHhHhc--CCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDV-RKEITFCKKT--NIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+......... .....+|.+++|.+.+ ..+...+ ..+++.++.. +.+++ +|.||.|..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 142 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRP---LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKDLR 142 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGG---GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHH---hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhhh
Confidence 46889999987543221110 1112589999988765 4466666 4566666554 66655 999999863
No 132
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.21 E-value=0.0015 Score=45.67 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=42.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+....... .... ...+|.+++|.+.. ..+...+..+++.+... +.+++ +|+||.|.
T Consensus 70 ~~~~~l~Dt~G~~~~~~~-~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl 139 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTI-TTAY--YRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI-LVGNKCDL 139 (189)
T ss_dssp EEEEEEEECCSCCSSCCS-GGGG--GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTC
T ss_pred EEEEEEEeCCCcHHHhhh-HHHh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECccc
Confidence 567899999874332111 0111 12589999988875 44666666677766653 55554 99999986
No 133
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.20 E-value=0.002 Score=45.46 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+....... ....+ ..+|.+++|.+.. ..+...+...++.++.. +.+++ +|.||.|.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~-~~~~~--~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl 145 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSI-AKSYF--RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM-LVGNKADI 145 (199)
T ss_dssp EEEEEEEECTTCTTCHHH-HHHHH--HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEE-EEEECGGG
T ss_pred EEEEEEEECCCCcchhhh-HHHHH--hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEE-EEEECccc
Confidence 567899999975443221 11111 1499999998875 45666666666666543 56655 99999985
No 134
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.20 E-value=0.00058 Score=52.30 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=34.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.++.+..|+||||++.++|..++.+|.+|+++.++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 355666999999999999999999999999999999854
No 135
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.19 E-value=0.0035 Score=46.88 Aligned_cols=67 Identities=15% Similarity=0.040 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCCChh--------HHHHHH-HhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDE--------HITVME-CLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~--------~~~~l~-~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+..... ...... .+....+|.+++|++... .+....+...+...+.|++ +|+||.|.
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~i-vv~NK~Dl 124 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCI-VALNMLDI 124 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEE-EEEECHHH
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 4578889999754322 001111 111236999999998765 4556667777777788876 99999874
No 136
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.0032 Score=43.30 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... .... ....+|.+++|.+.. ..+.+.+...++.+.. .+.+++ +|+||.|..
T Consensus 59 ~~~~~~~Dt~G~~~~~~--~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRS--VTHA-YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM-LLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECCCC----------C-CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECCSTT
T ss_pred EEEEEEEeCCCcHHHHH--HHHH-HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccC
Confidence 46788999987443221 1111 112589999988875 4455666666666554 355554 999999864
No 137
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.18 E-value=0.0074 Score=41.85 Aligned_cols=67 Identities=19% Similarity=0.092 Sum_probs=43.6
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... ..... ...+|.+++|.+.. ..+...+...++.+.. .+.+++ +|+||.|..
T Consensus 69 ~~~~~l~Dt~G~~~~~~-~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRS-LTTAF--FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV-LCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHH-HHHHT--TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE-EEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHH-HHHHH--HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 56889999997543222 12221 23589999988875 5566666666666654 355555 999999863
No 138
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.17 E-value=0.0023 Score=45.46 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=40.9
Q ss_pred CCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+...... ...+. .+|.+++|.+.. ..+...+...+..+... +.+++ +|+||.|.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl 137 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYR-----GAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLL-LVGNKSDM 137 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHT-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEE-EEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhc-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCC
Confidence 46789999987432211 12222 489999988875 44566666666665543 45554 99999986
No 139
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.17 E-value=0.0034 Score=42.56 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+....... ....+ ..+|.+++|.+.. ..+...+...+..+... +.++ -+|.||.|..
T Consensus 51 ~~~~~~~D~~G~~~~~~~-~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 121 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASL-APXYY--RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIII-ALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEEECCSGGGGGG-HHHHH--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEECGGGG
T ss_pred EEEEEEEECCCChhhhhh-hhhhh--ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcE-EEEEECCCcc
Confidence 567899999975432221 11111 2589999988775 44666776666666532 4544 4899999863
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.00065 Score=49.58 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=33.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.++.++ +..|+||||++.++|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 345555 778999999999999999999999999998854
No 141
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.15 E-value=0.0011 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.5
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHH
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
.+....|+++ |..|+||||+...+.
T Consensus 5 ~~~~~~i~v~-G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 5 VERPPVVTIM-GHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCCCEEEEE-SCTTTTHHHHHHHHH
T ss_pred CCCCCEEEEE-CCCCCCHHHHHHHHh
Confidence 4456677777 788999999997774
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.15 E-value=0.0051 Score=49.19 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=17.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHH
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA 28 (192)
+.|+++ |..++||||+.-.|.
T Consensus 2 ~~v~iv-G~pnvGKStL~nrl~ 22 (439)
T 1mky_A 2 ATVLIV-GRPNVGKSTLFNKLV 22 (439)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHh
Confidence 567777 899999999987775
No 143
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.14 E-value=0.0034 Score=43.99 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=41.0
Q ss_pred CCCcEEEEeCCCCCChhHH--HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-----cCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHI--TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-----TNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~--~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-----~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+....... ..+. .+|.+++|.+.+ ..+.+.+...++.+.. .+.+++ +|+||.|..
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pii-lv~nK~Dl~ 127 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSIS-----KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM-LVGNKCDET 127 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHH-----HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEE-EEEECTTCS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhc-----cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccCC
Confidence 3567899999875432221 1222 489988888875 4455555555554443 255654 999999863
No 144
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=97.13 E-value=0.0014 Score=53.27 Aligned_cols=175 Identities=13% Similarity=0.148 Sum_probs=98.8
Q ss_pred CcEEEEEEeCC-CCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCC-CCC---CccccCC-CCcc--------
Q psy9977 5 VKHVILVLSGK-GGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNI-ENS---DVHQCPE-GWVP-------- 70 (192)
Q Consensus 5 ~~~~i~~~s~~-gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~-~~~---~~~~~~~-~~~~-------- 70 (192)
++|-|.|+++- +|.||-.+|+.++..|..+|++|..+-+||.-. . -.|. .+- +..-... +..+
T Consensus 2 ~~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpyln-v--d~gtmsp~~hgevfv~~dg~e~dldlg~yer 78 (535)
T 3nva_A 2 PNKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYIN-V--DAGTMNPYMHGEVFVTEDGAETDLDLGHYER 78 (535)
T ss_dssp CCEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSS-S--SSTTCCHHHHCCCEECTTCCEECTHHHHHHH
T ss_pred CceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCccee-e--cCCCCCccccceEEEecCCccccccccchhh
Confidence 46889999876 999999999999999999999999999997531 1 1110 000 0000001 1111
Q ss_pred cccCCCCceEEEeeccccccC----CcccccC-----CchhHHHHHHHHHhhc-CCCCcEEEEeCCCCCChhHH----HH
Q psy9977 71 VYTDASQTLAVMSIGFLLKNR----DDAIIWR-----GPKKTAMIRQIINDVC-WKDVDYLIIDTPPGTSDEHI----TV 136 (192)
Q Consensus 71 ~~~~~~~~l~~~~~~~~~~~~----~~~~~~~-----~~~~~~~l~~~l~~l~-~~~~D~IiiD~~~~~~~~~~----~~ 136 (192)
........-.-++.|..+..- +....+. =|+.+..+++.+.... ...+|++|+..++..++-.. .+
T Consensus 79 f~~~~l~~~~n~ttg~iy~~vi~ker~g~ylg~tvqviphit~eik~~i~~~~~~~~~dv~i~eiggtvgdies~pf~ea 158 (535)
T 3nva_A 79 FMDVNMTKYNNITAGKVYFEVIKKEREGKYLGQTVQIIPHVTDQIKDMIRYASKINNAEITLVEIGGTVGDIESLPFLEA 158 (535)
T ss_dssp HHCCCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEEECSCTTSGGGHHHHHH
T ss_pred hcCCCcccccCcchhHHHHHHHHHHhcCCcCCCeeEECCCchHHHHHHHHHhhccCCCCEEEEEeCCccchhcccHHHHH
Confidence 111122233334444333210 0000001 1344566666666554 35899999999998866333 23
Q ss_pred HHHhhh--hcCCeE-----EEec--CCCcccHHHHHHHHHHhHhcCCceeeEEec
Q psy9977 137 MECLRE--VQCDGA-----VLVT--TPQAVSIEDVRKEITFCKKTNIKILGLIEN 182 (192)
Q Consensus 137 l~~~~~--~~ad~v-----iiv~--~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N 182 (192)
+..+.. ..-+.. ++|. ..+...-.-++..++.++..|+...++|+-
T Consensus 159 ~rq~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhsv~~Lrs~GIqPdilvcR 213 (535)
T 3nva_A 159 VRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGR 213 (535)
T ss_dssp HHHHHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHHHHHHHHHTCCCSEEEEE
T ss_pred HHHHHHHhCCCCEEEEEeeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEe
Confidence 333221 112222 2222 235566677888999999999887766653
No 145
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.13 E-value=0.0045 Score=43.11 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+...... ..... ....+|.+++|.+.. ..+...+...++.+.+ .+.+++ +|.||.|.
T Consensus 68 ~~~~~l~Dt~G~~~~~~-~~~~~-~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 139 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRK-SMVQH-YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDL 139 (189)
T ss_dssp EEEEEEEECCCSHHHHT-TTHHH-HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE-EEEECTTC
T ss_pred EEEEEEEECCCchhhhh-hhhHH-HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 46789999987432210 11111 012589999988875 4455555555555443 355555 99999986
No 146
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.0018 Score=45.18 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=41.6
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... ...+. .+|.+++|.+.. ..+...+...++.+... +.++ -+|+||.|.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYR-----GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN-MLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHT-----TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEE-EEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhc-----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcE-EEEEECCcC
Confidence 356789999987432211 11222 589999988875 44566666666666542 4444 489999986
No 147
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.11 E-value=0.004 Score=42.26 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=40.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+....... .... ...+|.+++|.+.. ..+...+..+++.+... +.+ +-+|.||.|.
T Consensus 54 ~~~~~~~Dt~G~~~~~~~-~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl 123 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRAL-APMY--YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIV-VAIAGNKCDL 123 (170)
T ss_dssp EEEEEEEEECCSGGGGGG-THHH--HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSE-EEEEEECTTC
T ss_pred EEEEEEEcCCCchhhhcc-cHhh--CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECCcc
Confidence 567899999975322211 1111 12589988888775 44666666677766653 333 4478899986
No 148
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.11 E-value=0.0028 Score=43.08 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+..... ....+. .+|.+++|.+.. ..+...+...+..+... +.+++ +|+||.|.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl 120 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYR-----GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLL-LVGNKSDM 120 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHT-----TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTC
T ss_pred EEEEEEEeCCCChhhhhhHHHHhc-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccC
Confidence 5678899998742211 112222 489988888875 44566666666665543 55554 99999986
No 149
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.00055 Score=47.71 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=32.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+++++|++ ..|+||||++..|+..+...|+++..|-.|..
T Consensus 2 ~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 2 SLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp -CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 57899996 77999999999999999999988877776643
No 150
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.11 E-value=0.00075 Score=52.19 Aligned_cols=39 Identities=10% Similarity=0.417 Sum_probs=34.6
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.++.+..|+||||++.++|..++..|.+|+++.++...
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA 86 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 456669999999999999999999999999999998653
No 151
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=0.00083 Score=46.79 Aligned_cols=43 Identities=30% Similarity=0.247 Sum_probs=34.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
.+..|+++ |..|+||||++..|+..+...|.++..+|.|....
T Consensus 4 ~g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 4 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence 45666666 77889999999999999988899998888775543
No 152
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.09 E-value=0.0055 Score=44.24 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCCC----hh---HHHHHHHhhhhcCCeEEEecCCCcc-c--HHHHHHHHHHhHhc--CCceeeEEeccC
Q psy9977 117 DVDYLIIDTPPGTS----DE---HITVMECLREVQCDGAVLVTTPQAV-S--IEDVRKEITFCKKT--NIKILGLIENMS 184 (192)
Q Consensus 117 ~~D~IiiD~~~~~~----~~---~~~~l~~~~~~~ad~viiv~~~~~~-~--~~~~~~~~~~l~~~--~~~~~g~v~N~~ 184 (192)
.+.+.|+|+|+... .. ....+..+ ...+|.+++|.+.... + .......+..+... +.+++ +|+||.
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pii-lv~nK~ 152 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITAL-AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIV-IGFNKI 152 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHH-HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEE-EEEECG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHh-hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEE-EEEeCc
Confidence 45678888887632 11 01111111 1247888887776532 2 23334555555553 56654 888988
Q ss_pred cc
Q psy9977 185 GY 186 (192)
Q Consensus 185 ~~ 186 (192)
|.
T Consensus 153 Dl 154 (228)
T 2qu8_A 153 DK 154 (228)
T ss_dssp GG
T ss_pred cc
Confidence 85
No 153
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.09 E-value=0.0011 Score=51.62 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=34.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..++.++ +..|+||||++..++..++..|.+|++||....
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4566666 458999999999999999999999999998744
No 154
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.018 Score=39.84 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+..... ....+. .+|.+++|.+.. ..+.....+.+..+.+ .+.+++ +|.||.|..
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~ 130 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYT-----NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL-IFANKQDVK 130 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHT-----TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE-EEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhc-----CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEE-EEEECCCCc
Confidence 4678899998753321 112222 489999988876 4467777776666543 355554 999999863
No 155
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.08 E-value=0.013 Score=40.77 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+...... ....+ ...+|.+++|.+.. ..++..+...+..+.+ .+.+++ +|+||.|..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~--~~~~~-~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRS--MWERY-CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL-VLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHT--THHHH-HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTST
T ss_pred CCEEEEEEECCCCHhHHH--HHHHH-HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEE-EEEECCCCc
Confidence 467889999987432211 11111 12589999988875 4567777666555432 456655 999999863
No 156
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.08 E-value=0.012 Score=40.37 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=41.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh------cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK------TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~------~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+... ...+.. +|.+++|.+.. ..+...+..+++.+.. .+.+++ +|.||.|.
T Consensus 53 ~~~l~i~Dt~G~~~---~~~~~~-----~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl 120 (178)
T 2iwr_A 53 THLVLIREEAGAPD---AKFSGW-----ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALA-LVGTQDRI 120 (178)
T ss_dssp EEEEEEEECSSSCC---HHHHHH-----CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEE-EEEECTTC
T ss_pred EEEEEEEECCCCch---hHHHHh-----CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 45678899987654 233443 99999988875 5567777765545442 245554 99999885
No 157
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.07 E-value=0.012 Score=40.57 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=39.5
Q ss_pred CCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+.... .....+. .+|.+++|.+.. ..+...+...+..+.. .+.+++ +|.||.|.
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl 121 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMR-----TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV-LVGNKCDL 121 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHH-----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHh-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccC
Confidence 456778999974332 2222233 389888887765 4456666666665543 356655 99999985
No 158
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.07 E-value=0.0017 Score=45.96 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=40.3
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-------cCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-------TNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+....... .... ...+|.+++|.+.. ..+...+...+..+.. .+.+++ +|+||.|..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~-~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSL-GVAF--YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV-VLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCS-CCGG--GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEE-EEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHh-HHHH--HhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEE-EEEECCCCc
Confidence 3567899999874321110 0001 12589999988875 4455555555554432 355554 999999864
No 159
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.07 E-value=0.0021 Score=53.53 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=43.4
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..|.+-|+|+|+..+.. ......+. .+|.+++|++............+......+++++ +++||.|..
T Consensus 69 ~~~~l~liDTPGh~dF~-~ev~~~l~--~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiI-vViNKiDl~ 136 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFS-YEVSRSLA--ACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV-PVLNKIDLP 136 (599)
T ss_dssp CEEEEEEEECCCCGGGH-HHHHHHHH--HCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEE-EEEECTTST
T ss_pred CeEEEEEEECCCchHHH-HHHHHHHH--HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EeeeccCcc
Confidence 35788999999764332 22222221 3999999998865433344444444555688765 999999863
No 160
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.07 E-value=0.00046 Score=55.24 Aligned_cols=68 Identities=12% Similarity=0.023 Sum_probs=37.7
Q ss_pred CCCcEEEEeCCCCCCh-------hHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSD-------EHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~-------~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+..+.|+|+|+.... ........ -.++|.+++|++....--..-..+.+.+++.+.+++ +|+||.|.
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~--~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvi-lv~NK~D~ 123 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA--MDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDN 123 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHH--HHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEE-EEEECCCC
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHH--HHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccC
Confidence 3557888898875311 11111111 125999999988764322333456666777777765 99999985
No 161
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.07 E-value=0.0042 Score=44.10 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=41.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+..... .+.......+|.+++|.+.. ..+.+.+...++.+... +.++ -+|.||.|.
T Consensus 74 ~~~l~l~Dt~G~~~~~---~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl 143 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFR---SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT-VLVGNKIDL 143 (201)
T ss_dssp EEEEEEEEECCSGGGH---HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECGGG
T ss_pred EEEEEEEECCCcHHHH---HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCC
Confidence 4678899998753321 11111123689999988865 44666666666666543 4444 488999885
No 162
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.06 E-value=0.0035 Score=52.84 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=47.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+..... ......+. .+|.+++|+++.........+.+..+...+++++ +++||.|..
T Consensus 72 ~~~~~nliDTpG~~~f~-~~~~~~l~--~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~ 139 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFV-GEIRGALE--AADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG 139 (665)
T ss_dssp TTEEEEEEECCCSGGGH-HHHHHHHH--HCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC
T ss_pred CCEEEEEEeCCCccchH-HHHHHHHh--hcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh
Confidence 36678899998654321 12222221 3899999998876655667778888877888877 889999864
No 163
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.06 E-value=0.0044 Score=50.23 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc-------cHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV-------SIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~-------~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+.... .......+ ..+|.+++|++.+.. -.....+.+..+...+.+.+-+++||.|..
T Consensus 109 ~~~~~~iiDTPG~~~f-~~~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 HRANFTIVDAPGHRDF-VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SSCEEEEECCCCCGGG-HHHHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHH-HHHHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 5778999999976432 22333332 269999999998764 234566666667777776555999999863
No 164
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.05 E-value=0.0097 Score=41.69 Aligned_cols=66 Identities=11% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+..... ....+. .+|.+++|.+.. ..++..+...+..+.+ .+.+++ +|.||.|..
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~-----~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl~ 143 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQ-----NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL-VFANKQDMP 143 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHH-----TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhc-----cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEE-EEEECCCCC
Confidence 35788999999753221 112233 499999988875 4567777666665533 256554 999999863
No 165
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.05 E-value=0.00076 Score=54.14 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=35.7
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
-+.++.+..|+||||++.++|..++.+|.+|+++.++....
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKK 238 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTT
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 35666699999999999999999999999999999986543
No 166
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.04 E-value=0.002 Score=45.49 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=41.4
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh------cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK------TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~------~~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+.... ..+.......+|.+++|.+.. ..+...+..+++.+.. .+.+++ +|.||.|..
T Consensus 72 ~~~~~l~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDLY---KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV-LVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHHH---HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE-EEEECC---
T ss_pred EEEEEEEECCCcHHH---HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE-EEEECcccc
Confidence 567899999865321 112111123589999988875 4466777777777664 355554 999999863
No 167
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.04 E-value=0.0069 Score=43.67 Aligned_cols=37 Identities=16% Similarity=-0.043 Sum_probs=29.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
..+. |+.+-=|+||||.+...+..+...|++|+++-.
T Consensus 28 G~I~-vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIE-CITGSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CEEE-EEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEE-EEECCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3444 444556799999999999999999999999954
No 168
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.02 E-value=0.014 Score=40.57 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+++..... .+.. +|.+++|.+.. ..+.+.+..++..+.. .+.+++ +|.||.|.
T Consensus 66 ~~~l~i~Dt~G~~~~~---~~~~-----~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 131 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ---FAAW-----VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV-LVGTQDAI 131 (184)
T ss_dssp EEEEEEEECSSSCCHH---HHHH-----CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE-EEEECTTC
T ss_pred EEEEEEEECCCChhhh---eecC-----CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 4677889998765432 3333 89988887765 5567777777777664 345554 89999885
No 169
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.01 E-value=0.0011 Score=47.44 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
++++|++. |-.|+||||++..|+..+...|.+|..+.
T Consensus 8 ~~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 34566666 66789999999999999998999985543
No 170
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.01 E-value=0.013 Score=43.00 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=38.1
Q ss_pred CCCcEEEEeCCCCCChhHH-------HHHHHh--hhhcCCeEEEecCCCcccHHHHHHHHHHhHhc------CCceeeEE
Q psy9977 116 KDVDYLIIDTPPGTSDEHI-------TVMECL--REVQCDGAVLVTTPQAVSIEDVRKEITFCKKT------NIKILGLI 180 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~-------~~l~~~--~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~------~~~~~g~v 180 (192)
....++|+|+|+....... .....+ ..+.+|.+++|++.+.... ....+++.+.+. +.++ -++
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~i-ilv 145 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMV-IVF 145 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEE-EEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEE-EEE
Confidence 3567899999986432211 111111 1246899999988775332 233344444432 3443 488
Q ss_pred eccCcc
Q psy9977 181 ENMSGY 186 (192)
Q Consensus 181 ~N~~~~ 186 (192)
.|+.|.
T Consensus 146 ~nK~Dl 151 (247)
T 3lxw_A 146 TRKEDL 151 (247)
T ss_dssp ECGGGG
T ss_pred EchHhc
Confidence 898875
No 171
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.01 E-value=0.0054 Score=42.01 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh-------cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK-------TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... ... .....+|.+++|.+.. ..+...+...++.+.. .+.+++ +|.||.|..
T Consensus 55 ~~~~~i~Dt~G~~~~~~--~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRS--LRT-PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-ILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHH--HHG-GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEE-EEEECTTCS
T ss_pred EEEEEEEeCCCchhhhh--hHH-HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEE-EEEECCccc
Confidence 46789999987443221 221 1123588888887765 4455555555555442 455555 999999863
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.01 E-value=0.0026 Score=56.57 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=46.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+... ........ ...+|.+|+|++.......++.+.+..+...+++.+-+++||.|..
T Consensus 357 ~~~kI~IIDTPGHed-F~~~mi~g--as~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPGHAD-YVKNMITG--AAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCCHHH-HHHHHHHT--SCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCChHH-HHHHHHHH--HhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 467889999996432 22222222 2368999999988765555666666777777888555889999864
No 173
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.00 E-value=0.0073 Score=42.26 Aligned_cols=66 Identities=9% Similarity=0.193 Sum_probs=40.9
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... ..... -..+|.+++|.+.. ..+.+.....+..+.+ .+.+++ +|.||.|.
T Consensus 66 ~~~~~i~Dt~G~~~~~~--~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl 136 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARR--LWKDY-FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV-ILGNKIDA 136 (190)
T ss_dssp TEEEEEEECCCSGGGTT--SGGGG-CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTS
T ss_pred CEEEEEEECCCCHHHHH--HHHHH-HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEE-EEEECCCC
Confidence 46778889986533211 11110 12589999988876 4467777766655532 456654 99999885
No 174
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.00 E-value=0.003 Score=43.01 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCCCChhH--H-HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc----CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH--I-TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT----NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~-~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~----~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... . ..+. .+|.+++|.+.+ ..+...+...+..+.+. +.+++ +|.||.|.
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 121 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQ-----TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDL 121 (169)
T ss_dssp EEEEEEECCCCC--------CHHHH-----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTC
T ss_pred EEEEEEEECCCccccchhhhhhhhc-----cCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE-EEeeCcch
Confidence 56778899987543321 1 1122 389888888775 44666666666655542 56655 99999985
No 175
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.00 E-value=0.0027 Score=45.39 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=39.5
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhh--hcCCeEEEecCCC--cccHHHHHHHHHHhHh-------cCCceeeEEeccCc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLRE--VQCDGAVLVTTPQ--AVSIEDVRKEITFCKK-------TNIKILGLIENMSG 185 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~--~~ad~viiv~~~~--~~~~~~~~~~~~~l~~-------~~~~~~g~v~N~~~ 185 (192)
.+.+.++|+|+...... .....+.. ..+|.+++|.+.. ..++......+..+.. .+.+++ +|.||.|
T Consensus 54 ~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D 131 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRY-KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL-IACNKSE 131 (218)
T ss_dssp GSSCEEEECCCCGGGTH-HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEE-EEEECTT
T ss_pred CceEEEEECCCcHHHHH-HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEE-EEEEchH
Confidence 56889999997643321 11111110 1278888888775 2455555544443321 356655 9999998
Q ss_pred cC
Q psy9977 186 YT 187 (192)
Q Consensus 186 ~~ 187 (192)
..
T Consensus 132 l~ 133 (218)
T 1nrj_B 132 LF 133 (218)
T ss_dssp ST
T ss_pred hc
Confidence 63
No 176
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.00 E-value=0.0071 Score=41.36 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... ...+. .+|.+++|.+.. ..+...+...+..+.. .+.+++ +|+||.|.
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl 131 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIR-----DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM-LVGNKTDL 131 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHH-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE-EEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhc-----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCcc
Confidence 46788999987432211 12222 489999988875 4456666666655543 255544 89999885
No 177
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.00 E-value=0.00091 Score=52.00 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=34.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..++.++ +..|+||||++.+++..+++.|.+|+++|.+..
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 3455566 778999999999999999999999999999843
No 178
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.99 E-value=0.0081 Score=42.42 Aligned_cols=66 Identities=29% Similarity=0.214 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+....... .... ...+|.+++|.+.. ..+.+.+...++.+.+ .+.+++ +|.||.|.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~-~~~~--~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl 146 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTI-TQSY--YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL-LIGNKSDL 146 (201)
T ss_dssp EEEEEEECCTTCGGGHHH-HHHH--HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTC
T ss_pred EEEEEEEECCCcHhHHHH-HHHH--HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCcc
Confidence 468899999875432221 1111 12589999988875 4466666666666654 345554 89999986
No 179
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.99 E-value=0.0017 Score=44.74 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=40.3
Q ss_pred CCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc--CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... ...+ ..+|.+++|.+.. ..+...+...+..+.+. +.+++ +|.||.|.
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 125 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYY-----RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDD 125 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGG-----TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEE-EEEECTTC
T ss_pred EEEEEEEcCCCchhhhhhHHHHh-----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECCCC
Confidence 46788999987322111 0111 2489988888765 45666666666666543 35544 89999985
No 180
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.98 E-value=0.019 Score=41.78 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=17.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
...|+++ |..|+||||+.-.|.
T Consensus 29 ~~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHc
Confidence 4567777 788999999987765
No 181
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.97 E-value=0.0043 Score=46.00 Aligned_cols=67 Identities=16% Similarity=0.048 Sum_probs=41.5
Q ss_pred CCcEEEEeCCCCCChhH----HHH-HHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH----ITV-MECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~----~~~-l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+...... ... -..+....+|.+++|++... .+....+...+...+.+++ +++||.|.
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~--~~~~~~~~~~l~~~~~pvi-lv~NK~Dl 122 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN--PEQSLYLLLEILEMEKKVI-LAMTAIDE 122 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS--CHHHHHHHHHHHTTTCCEE-EEEECHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc--hhhHHHHHHHHHhcCCCEE-EEEECcCC
Confidence 56889999997543211 001 11111135899999988764 3344456666666788765 99999874
No 182
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.0048 Score=43.05 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=38.7
Q ss_pred CCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCC--cccHHHHHHHHHHhH-h------cCCceeeEEeccCc
Q psy9977 117 DVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQ--AVSIEDVRKEITFCK-K------TNIKILGLIENMSG 185 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~--~~~~~~~~~~~~~l~-~------~~~~~~g~v~N~~~ 185 (192)
.+.+.++|+|+.... .....+... ...+|.+++|.+.. ..+.......+..+. . .+.+++ +|+||.|
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D 167 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTR-AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL-IACNKSE 167 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHH-GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE-EEEECTT
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhh-cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE-EEEEchH
Confidence 567788888864322 111112110 01378899888875 345555544443332 1 356655 9999998
Q ss_pred cC
Q psy9977 186 YT 187 (192)
Q Consensus 186 ~~ 187 (192)
..
T Consensus 168 l~ 169 (193)
T 2ged_A 168 LF 169 (193)
T ss_dssp ST
T ss_pred hc
Confidence 64
No 183
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=96.96 E-value=0.017 Score=42.69 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=88.6
Q ss_pred CCcEEEEEEeC-CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCCCC-C---------ccccCCCCcccc
Q psy9977 4 GVKHVILVLSG-KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS-D---------VHQCPEGWVPVY 72 (192)
Q Consensus 4 ~~~~~i~~~s~-~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~ 72 (192)
..||-|.|+++ -+|.||-.+|+.++..|..+|++|..+-+||.-.-=+--+..-.. + ......-.+-..
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~GTMsP~qHGEVfVtdDG~EtDLDLGhYERFl 100 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFL 100 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC--------------------------------
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCCCCChhhhceEEeecccccccccccchHhhc
Confidence 35677777765 579999999999999999999999999999753210000111000 0 000011111111
Q ss_pred cCCCCceEEEeeccccccC----CcccccC-----CchhHHHHHHHHHhhc-------CCCCcEEEEeCCCCCChhHHH-
Q psy9977 73 TDASQTLAVMSIGFLLKNR----DDAIIWR-----GPKKTAMIRQIINDVC-------WKDVDYLIIDTPPGTSDEHIT- 135 (192)
Q Consensus 73 ~~~~~~l~~~~~~~~~~~~----~~~~~~~-----~~~~~~~l~~~l~~l~-------~~~~D~IiiD~~~~~~~~~~~- 135 (192)
......-..++.|..+..- +....+. -|+....+++.+.... ..++|++|++.++..++-...
T Consensus 101 ~~~l~~~~niTtGkiY~~Vi~kERrGdYLG~TVQvIPHiTdeIk~~I~~~a~~~~~~~~~~~Dv~IvEiGGTVGDIEs~P 180 (295)
T 2vo1_A 101 DIRLTKDNNLTTGKIYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVGDIESMP 180 (295)
T ss_dssp -------CEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHSCCSSSCCCCSEEEEEECSCTTCGGGHH
T ss_pred cCCcCccccccHHHHHHHHHHHHHcCCCCCCeEEecCChhhHHHHHHHHhhcccccccCCCCCEEEEEcCceeccccccH
Confidence 1122222333444333210 0000000 1344555666554431 257899999999988764432
Q ss_pred ---HHHHhhh--hcCCe-----EEEe--cCCCcccHHHHHHHHHHhHhcCCceeeEE
Q psy9977 136 ---VMECLRE--VQCDG-----AVLV--TTPQAVSIEDVRKEITFCKKTNIKILGLI 180 (192)
Q Consensus 136 ---~l~~~~~--~~ad~-----viiv--~~~~~~~~~~~~~~~~~l~~~~~~~~g~v 180 (192)
++..+.. ..-+. .++| ...+...-.-++.-.+.|+..|+...-+|
T Consensus 181 FlEAiRQ~~~~~g~~n~~~iHvtlvP~l~~~gE~KTKPTQhSVkeLr~~GIqPDiiv 237 (295)
T 2vo1_A 181 FIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPDLVV 237 (295)
T ss_dssp HHHHHHHHHHHSCGGGEEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHHHhhcccceeEEEeeccccccccccccccchHhHHHHHHhcCCCCCeee
Confidence 3332210 01111 2222 23345566778888899998888876333
No 184
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.94 E-value=0.0034 Score=43.44 Aligned_cols=66 Identities=23% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... .... ....+|.+++|.+.. ..+...+...++.+.. .+.+++ +|.||.|.
T Consensus 58 ~~~~~l~Dt~G~~~~~~--~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 127 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRS--VTRS-YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII-LCGNKKDL 127 (186)
T ss_dssp EEEEEEEEECCSGGGHH--HHHT-TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGG
T ss_pred EEEEEEEeCCCcHHHHH--HHHH-HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccc
Confidence 46788999987543222 2211 123589888888875 4455556656555543 355544 99999986
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.93 E-value=0.001 Score=47.66 Aligned_cols=41 Identities=29% Similarity=0.256 Sum_probs=33.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~ 46 (192)
+++.|++. |-.|+||||++..|+..+. ..|.++.++|.|..
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34566665 7789999999999999998 78999999997754
No 186
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.91 E-value=0.0032 Score=47.78 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
...|+++ |..|+||||+.-.|.
T Consensus 8 ~~~VaIv-G~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIV-GRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEE-CSSSSSHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHH
Confidence 3467777 889999999998875
No 187
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.90 E-value=0.0019 Score=45.64 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHH-HHHHHHhHhc--CCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDV-RKEITFCKKT--NIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+...... +.......+|.+++|.+.+ ..+...+ ..+++.++.. +.+++ +|.||.|..
T Consensus 72 ~~~l~i~Dt~G~~~~~~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 142 (201)
T 2gco_A 72 QVELALWDTAGQEDYDR---LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLR 142 (201)
T ss_dssp EEEEEEECCCCSGGGTT---TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGT
T ss_pred EEEEEEEECCCchhHHH---HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEecHHhh
Confidence 56788999987432211 1111112589999987765 4466666 4566666554 66665 999999863
No 188
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.90 E-value=0.0059 Score=42.60 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
....|+++ |..|+||||+...|.
T Consensus 22 ~~~~i~v~-G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 22 GLPEIALA-GRSNVGKSSFINSLI 44 (195)
T ss_dssp CCCEEEEE-EBTTSSHHHHHHHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHh
Confidence 44677777 577899999987775
No 189
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.89 E-value=0.014 Score=40.58 Aligned_cols=66 Identities=21% Similarity=0.121 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCCCCChhHH-HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHI-TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~-~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+....... ..... .+|.+++|.+.. ..+...+...++.+... +.+++ +|+||.|.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~----~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl 142 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYR----GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-LVGNKSDL 142 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHT----TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEE-EEEECGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhc----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECCCc
Confidence 3567889999875432211 11111 489888888875 44555666666666532 45444 89999885
No 190
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.89 E-value=0.0047 Score=43.16 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+..... ....+. .+|.+++|.+.. ..+.+.+...++.+... +.+++ +|.||.|.
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl 138 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYR-----GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSDL 138 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHT-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTC
T ss_pred EEEEEEEECCCchhhhhhHHHHhc-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECccc
Confidence 4678889998642211 112222 489999988875 44666666666666543 55554 89999986
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.88 E-value=0.0012 Score=47.21 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=28.9
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+..+.+..|+||||++..+|. ..|.+|++++.+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 444458899999999999998 6688999999886
No 192
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.0016 Score=45.56 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=42.1
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... . .......+|.+++|.+.. ..+.+.+..+++.+.. .+.+++ +|.||.|.
T Consensus 70 ~~~~~~i~Dt~G~~~~~~--~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl 140 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRT--I-TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI-LVGNKCDM 140 (191)
T ss_dssp TTEEEEEECHHHHHHCHH--H-HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTC
T ss_pred EEEEEEEEeCCChHHHHH--H-HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCC
Confidence 456788889886321111 1 111122589999888876 5566777777777765 355554 89999985
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.85 E-value=0.0014 Score=46.44 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=31.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+.++ |..|+|||+++..++..+.+.|.++.++++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 445555 7789999999999999999999999988764
No 194
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.84 E-value=0.00089 Score=46.85 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=28.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.|++ .|-.|+||||++..|+..+...|.+.-+++.|
T Consensus 4 ~~I~i-~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVV-TGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEE-ECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 34544 57788999999999999999888655566654
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.83 E-value=0.0021 Score=46.25 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=33.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..++|+++ |.+|+||||+..+++..+... .++..++.|+.
T Consensus 37 ~~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 45677777 669999999999999987665 78999998875
No 196
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.83 E-value=0.0094 Score=40.47 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=40.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... .... .-..+|.+++|.+.. ..+.......+..+.+ .+.+++ +|+||.|..
T Consensus 50 ~~~~~~~Dt~G~~~~~~--~~~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 121 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRP--YWRC-YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV-VFANKQDME 121 (171)
T ss_dssp TEEEEEEEECCCGGGGG--GGGG-GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTST
T ss_pred CEEEEEEECCCChhhhH--HHHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEE-EEEECCCCc
Confidence 45678889886533211 1111 112589888888875 4456666665554432 355554 999998863
No 197
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.81 E-value=0.003 Score=44.74 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+....... .... ...+|.+++|.+.. ..+...+...++.+... +.++ -+|+||.|..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~-~~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTI-TSSY--YRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK-LLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTTTTTCC-CGGG--GTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEECTTCT
T ss_pred EEEEEEEeCCChHHHHHH-HHHh--ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCCc
Confidence 567899999874332110 0011 12589999988875 45667777767666543 3544 4999999863
No 198
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.81 E-value=0.0022 Score=47.87 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=40.9
Q ss_pred CCCcEEEEeCCCCCChhH---H--HHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcC-CceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH---I--TVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTN-IKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~---~--~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~-~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... . ..-..+....+|.+++|++.... .........+...+ .+++ +++||.|.
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 121 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNII-LVLNKFDL 121 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEE-EEEECHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEE-EEEEChhc
Confidence 355689999997543211 0 11111112369999999887653 44445555555556 7655 99999873
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.80 E-value=0.0011 Score=46.23 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=29.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDI 43 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~ 43 (192)
.+.++++ |..|+||||++..++..+. ..|.++.++++
T Consensus 38 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3455555 7788999999999999998 68988877654
No 200
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.80 E-value=0.015 Score=39.78 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHh-H---hcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFC-K---KTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l-~---~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+.... .....+. .+|.+++|.+... .+...+...+..+ + ..+.+++ +|+||.|.
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 126 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMR-----AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV-LVGNKADL 126 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHH-----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE-EEEECGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHh-----hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 467889999974322 1222333 3899888887764 4566666555554 2 2356655 99999985
No 201
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.0011 Score=45.98 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=25.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.+++|-.|+||||++..||..+ +...+.++.|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 455666889999999999988765 3455556666
No 202
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.71 E-value=0.0021 Score=45.84 Aligned_cols=42 Identities=31% Similarity=0.393 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|..+.+.+|+++ |..|+||||++..|+..+.. ++.+++.|..
T Consensus 1 ~~~~~~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 1 MSAPKPFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp ----CCEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CCCCCcEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 445667788888 55689999999999887753 5888998864
No 203
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.71 E-value=0.008 Score=48.73 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=46.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+.. +........ ...+|.+++|++++........+.+..++..+++. -+++||.|..
T Consensus 72 ~~~i~iiDtPGh~-~~~~~~~~~--~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~ 138 (482)
T 1wb1_A 72 NYRITLVDAPGHA-DLIRAVVSA--ADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNA 138 (482)
T ss_dssp TEEEEECCCSSHH-HHHHHHHHH--TTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSS
T ss_pred CEEEEEEECCChH-HHHHHHHHH--HhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcc
Confidence 5688999998642 222222222 23689999999887655566666677777788887 4999999853
No 204
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.68 E-value=0.0017 Score=50.16 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|++..|+.+.+++|-.|+||||+|..||..+. +.+|++|..
T Consensus 1 ~~~m~m~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 1 MTEMTKPFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CCCCCCCceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 33333444555557788999999999998763 678999955
No 205
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.67 E-value=0.032 Score=38.55 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=41.2
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHh-Hh---cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFC-KK---TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l-~~---~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... .....+ ..+|.+++|.+.. ..+.......+..+ +. .+.+++ +|.||.|..
T Consensus 59 ~~~l~i~Dt~G~~~~~~-~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~ 130 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRP-YWRSYF--ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL-IFANKQDLL 130 (181)
T ss_dssp TEEEEEEECSSCGGGHH-HHHHHH--TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE-EEEECTTST
T ss_pred CEEEEEEECCCCHHHHH-HHHHHh--CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECcCcc
Confidence 56788999986543222 111111 2589999988865 45677666655544 22 356654 999999863
No 206
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.66 E-value=0.033 Score=38.29 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=39.4
Q ss_pred CCcEEEEeCCCCCCh--hHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhH----hcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSD--EHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCK----KTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~--~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~----~~~~~~~g~v~N~~~~ 186 (192)
.+.+-|+|+|+.... .....+. .+|.+++|.+.. ..+.+.+...+..+. ..+.+++ +|.||.|.
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 135 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMR-----TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDL 135 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHH-----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTC
T ss_pred EEEEEEEECCCchhhHHHHHHHHh-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCCc
Confidence 445667999874322 1122333 389998888776 445555655555543 2456655 99999985
No 207
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.66 E-value=0.0099 Score=41.91 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... .... .-..+|.+++|.+.. ..+.......+..+.+ .+.|++ +|.||.|.
T Consensus 68 ~~~l~i~Dt~G~~~~~~--~~~~-~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl 138 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARR--VWKN-YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL-ILGNKIDR 138 (198)
T ss_dssp TEEEEEEEECC----CC--GGGG-GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEE-EEEECTTS
T ss_pred CEEEEEEECCCcHhhHH--HHHH-HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE-EEEECCCc
Confidence 46778888886432211 1000 012489999988875 4567777666655532 356655 99999985
No 208
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.0027 Score=46.29 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=32.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~ 46 (192)
.+.++.+..|+|||+++.++|...+ +.|.+|+++.++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 3556668999999999999998755 56899999998855
No 209
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.65 E-value=0.0017 Score=52.83 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=33.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~ 46 (192)
+.++.+..|+||||++.++|..++.. |.+|++++++..
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 45666889999999999999999986 999999999865
No 210
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.65 E-value=0.0018 Score=53.29 Aligned_cols=40 Identities=35% Similarity=0.429 Sum_probs=33.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.+|.++ +..|+||||++..|+..|...|+++.++|.|.-
T Consensus 372 ~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3455555 778899999999999999999999999998853
No 211
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.64 E-value=0.0071 Score=50.31 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=46.0
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... .... ....+|.+++|++....-..++...+..++..+.|++ +++||.|..
T Consensus 69 ~~~i~liDTPGhe~F~~--~~~r-~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiI-VViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTT--LRKR-GGALADLAILIVDINEGFKPQTQEALNILRMYRTPFV-VAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTT--SBCS-SSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEE-EEEECGGGS
T ss_pred cCCEEEEECCCcHHHHH--HHHH-HHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEE-EEecccccc
Confidence 34689999997533211 1110 0124899999999876555566667777788888866 999999964
No 212
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.64 E-value=0.004 Score=44.48 Aligned_cols=41 Identities=29% Similarity=0.462 Sum_probs=33.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.+.+|++. |..|+||||++..|+..+...|.++..|..|.
T Consensus 20 ~~g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 345677777 77889999999999999987777788887764
No 213
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.63 E-value=0.0027 Score=50.91 Aligned_cols=38 Identities=18% Similarity=0.415 Sum_probs=33.2
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~ 46 (192)
+.++.+..|+||||++.++|...+. .|.+|+++++...
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4556689999999999999999997 5999999999854
No 214
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.63 E-value=0.0055 Score=43.44 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=42.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHH-HHHHHhHhc--CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVR-KEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~-~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... . ....-..+|.+++|.+.. ..+...+. .+++.++.. +.+++ +|.||.|.
T Consensus 76 ~~~~l~i~Dt~G~~~~~~--~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 146 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDR--L-RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDL 146 (204)
T ss_dssp CEEEEEEEEECCSGGGTT--T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE-EEEECHHH
T ss_pred EEEEEEEEECCCchhhHH--H-HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhh
Confidence 456777999987532211 1 111112589999988765 45666665 566666654 66655 99999885
No 215
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.62 E-value=0.0021 Score=44.97 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|..+++++|++. |-.|+||||++..|+..+ |. .++|.|
T Consensus 1 m~~~~~~~I~l~-G~~GsGKsT~~~~L~~~l---~~--~~i~~d 38 (194)
T 1qf9_A 1 MEKSKPNVVFVL-GGPGSGKGTQCANIVRDF---GW--VHLSAG 38 (194)
T ss_dssp CCCCCCEEEEEE-ESTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCCCcCcEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEeeHH
Confidence 455566666666 677899999999988766 44 446764
No 216
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.62 E-value=0.0023 Score=53.46 Aligned_cols=44 Identities=32% Similarity=0.289 Sum_probs=35.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSV 50 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~ 50 (192)
..+.++.|-.|+||||++..|+..|.++|+++..+|.|..+..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L 95 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGL 95 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhcc
Confidence 34445558889999999999999999999999999877554433
No 217
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.60 E-value=0.0033 Score=50.51 Aligned_cols=38 Identities=16% Similarity=0.449 Sum_probs=33.1
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~ 46 (192)
+.++.+..|+||||++.++|..++. .|.+|++++++..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4555589999999999999999997 6999999998865
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.58 E-value=0.0014 Score=46.52 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=26.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++++|++. |-.|+||||++..|+..+ |. .++|.|..
T Consensus 17 ~~~~I~l~-G~~GsGKSTla~~L~~~l---g~--~~i~~d~~ 52 (202)
T 3t61_A 17 FPGSIVVM-GVSGSGKSSVGEAIAEAC---GY--PFIEGDAL 52 (202)
T ss_dssp CSSCEEEE-CSTTSCHHHHHHHHHHHH---TC--CEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CC--EEEeCCcC
Confidence 34556555 778899999999998887 43 45777743
No 219
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.58 E-value=0.0035 Score=43.21 Aligned_cols=66 Identities=21% Similarity=0.141 Sum_probs=38.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHH-HHHHHhHhc--CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVR-KEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~-~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+........ ......+|.+++|.+.. ..+...+. .+++.++.. +.+++ +|.||.|.
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 124 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLR---PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV-LVGTKLDL 124 (182)
T ss_dssp ---CEEECCCC-CTTTTTG---GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHH
T ss_pred EEEEEEEECCCChhhhhhH---HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhh
Confidence 5667789998754322111 11112589999988875 55666665 466666653 56655 99999875
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0033 Score=45.41 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=33.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.+.++ |..|+||||++..++..+...|.++.+++++..
T Consensus 52 ~~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 52 VQAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3455555 777899999999999999999999999998643
No 221
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.57 E-value=0.0042 Score=43.88 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=39.3
Q ss_pred CCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+..... ....+. .+|.+++|.+.. ..+...+...+..+.. .+.+++ +|.||.|.
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 142 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYR-----GAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVI-LCGNKKDL 142 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHT-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEE-EEEECGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhc-----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCCc
Confidence 4678889988631110 111222 489999888865 4456666666665543 355544 99999986
No 222
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.57 E-value=0.0014 Score=45.69 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=25.2
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++++.|.++ |-.|+||||++..||..+ |.. ++|.|.
T Consensus 3 ~~~~~i~l~-G~~GsGKst~a~~La~~l---~~~--~i~~d~ 38 (185)
T 3trf_A 3 KNLTNIYLI-GLMGAGKTSVGSQLAKLT---KRI--LYDSDK 38 (185)
T ss_dssp --CCEEEEE-CSTTSSHHHHHHHHHHHH---CCC--EEEHHH
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 345667666 558899999999998876 444 467663
No 223
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.56 E-value=0.0076 Score=43.14 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=42.0
Q ss_pred CCCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc--CCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT--NIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~--~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+..... ....+. .+|.+++|.+.. ..+...+...+..+.+. +.+++ +|.||.|..
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYI-----QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHT-----TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEE-EEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHh-----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECCccc
Confidence 35678899998732211 112222 489999988776 44566666666666543 56655 999999863
No 224
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.54 E-value=0.0028 Score=51.63 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+...... .+.. ....+|.+++|++.+......+.+.+..+...+.|++ +++||.|..
T Consensus 50 ~~~i~~iDTPGhe~f~~--~~~~-~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiI-VviNKiDl~ 116 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTS--MRAR-GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVV-VAVNKIDKP 116 (501)
T ss_dssp SSCCCEECCCTTTCCTT--SBCS-SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEE-EEEECSSSS
T ss_pred CEEEEEEECCCcHHHHH--HHHH-HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEE-EEEEecccc
Confidence 34677889987433211 1110 0225899999998776555555666666777788855 999999863
No 225
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.53 E-value=0.0025 Score=52.75 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=33.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCC-CeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKG-FKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g-~~vlliD~d~~ 46 (192)
+.+|+|+ |-.|+||||++..|+..|..+| +++.++|.|.-
T Consensus 396 ~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 3445554 7788999999999999999888 99999998854
No 226
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.53 E-value=0.0031 Score=44.36 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=29.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+++.++ +--|+||||++..++..+..+|++|+++-..
T Consensus 4 ~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 444454 6667999999999999999999999997544
No 227
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.53 E-value=0.0044 Score=43.32 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=27.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
+|+++ |-.|+||||++..|+..+...|..++-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35555 77789999999999999988899885443
No 228
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.52 E-value=0.0054 Score=43.77 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=40.1
Q ss_pred CcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCccC
Q psy9977 118 VDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGYT 187 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~~ 187 (192)
+.+.|+|+|+..... ....+. .+|.+++|.+.. ..+...+...+..+.. .+.+++ +|.||.|..
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYI-----GASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIV-VCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHT-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEE-EEEECTTCC
T ss_pred EEEEEEecCCchhhchHHHHHhh-----cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCc
Confidence 678999998743211 111222 489998888876 4455555555555543 255655 999999863
No 229
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.01 Score=42.60 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=39.7
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc---CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT---NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~g~v~N~~~~ 186 (192)
.+.+.|+|+|+...... .. ......+|.+++|.+.. ..+...+..++..+... +.++ -+|.||.|.
T Consensus 61 ~~~~~i~Dt~G~~~~~~--~~-~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~pi-ilv~nK~Dl 130 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRA--IT-SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV-GLIGNKSDL 130 (223)
T ss_dssp EEEEEEECCTTTTTTTC--CC-GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEE-EEEECCGGG
T ss_pred EEEEEEEECCCccchhh--hH-HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECccc
Confidence 46788899987432211 00 01112589888888875 45666666666666543 4554 489999985
No 230
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.50 E-value=0.0047 Score=43.34 Aligned_cols=34 Identities=38% Similarity=0.344 Sum_probs=27.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
.|++. |-.|+||||++..|+..+...|.+|+..+
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 35555 77789999999999999999999997554
No 231
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.47 E-value=0.046 Score=40.18 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=17.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
...|+++ |..|+||||+.-.|.
T Consensus 22 ~~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 22 ELRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHh
Confidence 4567777 688999999987774
No 232
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.47 E-value=0.0039 Score=45.30 Aligned_cols=42 Identities=29% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~ 46 (192)
..++.|+|. |-.|+||||++..|+..|.. .|++|.++--.|.
T Consensus 19 ~~~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 344555555 77889999999999999999 9999987545544
No 233
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.45 E-value=0.033 Score=39.08 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+++...... ...... .+|.+++|.+.. ..+...+...+..+.. .+.+++ +|.||.|.
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~----~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 142 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQ----TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDL 142 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHH----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTC
T ss_pred EEEEEEEecCCCccchhhhHHHhhc----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEeechhc
Confidence 45678889886543221 111111 489888887765 4566666666666653 256655 89999886
No 234
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.44 E-value=0.012 Score=40.73 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHH-HHHHHHhHh--cCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDV-RKEITFCKK--TNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~-~~~~~~l~~--~~~~~~g~v~N~~~~~ 187 (192)
..+.+.++|+|+...... +.......+|.+++|.+.. ..+...+ ..+++.+++ .+.+++ +|.||.|..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDN---VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTT---TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE-EEEECGGGG
T ss_pred EEEEEEEEECCCChhhhh---hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEcchhh
Confidence 356788999987432111 1111112589888888775 4556665 445555554 255554 999999863
No 235
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.43 E-value=0.0027 Score=51.75 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHh-C-CCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKD-K-GFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~-~-g~~vlliD~d~ 45 (192)
..+|.++ +-.|+||||++..||..|.. . |+.+-++|.|.
T Consensus 395 ~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3455555 77899999999999999997 6 47888999986
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.43 E-value=0.0045 Score=43.93 Aligned_cols=33 Identities=30% Similarity=0.237 Sum_probs=25.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
+.|+|. |-.|+||||++..|+..+...| +|...
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 455555 7788999999999999998777 66443
No 237
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.40 E-value=0.002 Score=52.93 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=45.9
Q ss_pred CcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 118 VDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.++|+|+...... .+. .....+|.+++|++.+..........+..+...+.|++ +++||.|.
T Consensus 52 ~~i~~iDTPGhe~f~~--~~~-~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiI-VViNKiDl 116 (537)
T 3izy_P 52 EKITFLDTPGHAAFSA--MRA-RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV-LAINKCDK 116 (537)
T ss_dssp SCCBCEECSSSCCTTT--SBB-SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEE-ECCBSGGG
T ss_pred CEEEEEECCChHHHHH--HHH-HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEecccc
Confidence 3567888887432211 110 00124899999999988777788888888888888865 99999986
No 238
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.40 E-value=0.0025 Score=45.00 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=26.0
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++.+++|+++ +..|+||||++..||.. |.. ++|.|.
T Consensus 5 ~~~~~~I~i~-G~~GsGKST~~~~La~~----g~~--~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGIT-GNIGSGKSTVAALLRSW----GYP--VLDLDA 40 (203)
T ss_dssp -CCCEEEEEE-ECTTSCHHHHHHHHHHT----TCC--EEEHHH
T ss_pred ccCceEEEEE-CCCCCCHHHHHHHHHHC----CCE--EEcccH
Confidence 4556677777 66789999999888764 655 478773
No 239
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.39 E-value=0.029 Score=45.46 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=42.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+++....... .... -..+|.+++|.+.. ..+.......+..+.+ .+.+++ +|.||.|.
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~-~~~~--~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 435 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPL-WRHY--YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDL 435 (497)
T ss_dssp SSCEEEEEEECCCGGGSGG-GGGG--GTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEE-EEEECCSS
T ss_pred CCEEEEEEECCCcHHHHHH-HHHH--hccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEE-EEEECCCC
Confidence 3678899999974332211 1111 12599999998875 4567777666555532 356655 99999986
No 240
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.39 E-value=0.0059 Score=46.84 Aligned_cols=41 Identities=32% Similarity=0.268 Sum_probs=32.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHh--CCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKD--KGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~--~g~~vlliD~d~~ 46 (192)
.+.+|++. |-.|+||||++..|+..+.. .+.+|.++..|..
T Consensus 91 ~p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 34466666 77789999999999998875 3568999999854
No 241
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.39 E-value=0.0052 Score=42.38 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=26.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+++|+++ |-.|+||||++..|+..+ |. .++|.|..
T Consensus 7 ~g~~i~l~-G~~GsGKSTl~~~l~~~~---g~--~~i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLM-GVSGSGKSAVASEVAHQL---HA--AFLDGDFL 42 (175)
T ss_dssp TSEEEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEGGGG
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHhh---Cc--EEEeCccc
Confidence 45666666 777899999999998776 53 45777643
No 242
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.35 E-value=0.0052 Score=46.33 Aligned_cols=38 Identities=39% Similarity=0.493 Sum_probs=31.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~ 45 (192)
.+++++ +..|+||||++..+|..++.. |.+|++++.+.
T Consensus 36 ~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 455555 788899999999999999975 88999998875
No 243
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.33 E-value=0.0059 Score=43.40 Aligned_cols=36 Identities=33% Similarity=0.275 Sum_probs=28.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
+++|++. |-.|+||||++..|+..+...+.++.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3456565 66779999999999999998898885443
No 244
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.32 E-value=0.011 Score=41.15 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=39.0
Q ss_pred CCcEEEEeCCCCCChhHH--HHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHI--TVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~--~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
.+.+.++|+|+....... ..+ ..+|.+++|.+.. ..+.......+..+.+ .+.+++ +|.||.|..
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 136 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYF-----SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL-IFANKQDLP 136 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSS-----TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEE-EEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHh-----hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEE-EEEECCCCc
Confidence 456788888764321110 111 2489888888875 4466666665554432 355544 999999863
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.31 E-value=0.0051 Score=46.86 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=31.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d 44 (192)
+-+.++ |..|+|||+++..+|..+. ++|++|.++.+.
T Consensus 153 ~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 455555 6788999999999999999 999999998764
No 246
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.29 E-value=0.0035 Score=47.41 Aligned_cols=41 Identities=32% Similarity=0.170 Sum_probs=30.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCC--CeEEEE-eeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKG--FKVGIL-DIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g--~~vlli-D~d~~ 46 (192)
.+.+|++. |..|+||||++..|+..+...| .++..+ ..|..
T Consensus 30 ~~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 30 CPLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 44566666 7888999999999999998755 444444 87743
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.28 E-value=0.0038 Score=47.91 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhC------CCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDK------GFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~------g~~vlliD~d~~ 46 (192)
.++.++ +..|+||||++.++|...+.. |.+|+++|++..
T Consensus 108 ~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 108 TMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred cEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 344454 778999999999999987665 789999999854
No 248
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.28 E-value=0.0046 Score=43.85 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=26.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+++|+++ |-.|+||||++..|+..+ |. .++|.|..
T Consensus 28 ~g~~i~l~-G~~GsGKSTl~~~L~~~~---g~--~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVM-GVSGSGKTTIAHGVADET---GL--EFAEADAF 63 (200)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHH---CC--EEEEGGGG
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHhh---CC--eEEccccc
Confidence 34566666 778899999999999877 53 45777643
No 249
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.28 E-value=0.0062 Score=46.36 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHH--hCCCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLK--DKGFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la--~~g~~vlliD~d~~ 46 (192)
+.+.+|+++ |..|+||||++..|+..+. -.+-++.++++|-.
T Consensus 78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 445678887 6677999999999998886 34557889998854
No 250
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.27 E-value=0.0052 Score=50.32 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=35.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++.+.++.|-.|+||||++..||..|...+.++.+++.|..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 45566667889999999999999999989999999998843
No 251
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.27 E-value=0.021 Score=40.70 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=42.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHH-HHHHHHHhHhc--CCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIED-VRKEITFCKKT--NIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~-~~~~~~~l~~~--~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+++...... . ....-..+|.+++|.+.. ..+... ...+++.+.+. +.+++ +|.||.|..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~--~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDN--V-RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL-LIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTT--T-GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEE-EEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHH--H-HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhc
Confidence 457788999987432211 1 111112589999988876 456666 46666766654 55555 899999853
No 252
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.26 E-value=0.017 Score=44.35 Aligned_cols=66 Identities=12% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHh-Hh---cCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFC-KK---TNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l-~~---~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+...... ...+. .+|.+++|.+.. ..++..+...+..+ +. .+.+++ +|.||.|..
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~-----~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lV~NK~Dl~ 279 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQ-----NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL-VFANKQDLP 279 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHT-----TEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTST
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhc-----cCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE-EEEECccCC
Confidence 467889999997432211 11222 489999988875 55676666555444 32 256555 999999863
No 253
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.25 E-value=0.018 Score=40.83 Aligned_cols=67 Identities=21% Similarity=0.125 Sum_probs=42.0
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHH-HHHHHhHhc--CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVR-KEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~-~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+........ ...-..+|.+++|.+.. ..+...+. .+++.++.. +.+++ +|.||.|.
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 125 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLR---PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-LVGTKLDL 125 (212)
T ss_dssp CEEEEEEECCCCCCCCCC-----CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHH
T ss_pred EEEEEEEEECCCcHHHHHHH---HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeCHHh
Confidence 35678899998754322111 11112589999988875 45666665 566666654 66655 99999875
No 254
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.24 E-value=0.07 Score=37.69 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcc--cHHHHHHHH-HHhH-----hcCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAV--SIEDVRKEI-TFCK-----KTNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~--~~~~~~~~~-~~l~-----~~~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+...... .....+ ...+|.+++|.+.... +.......+ +.+. ..+.+++ +|.||.|..
T Consensus 53 ~~~~~i~Dt~G~~~~~~-~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 128 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRF-QLLDRF-KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL-IACNKQDIA 128 (214)
T ss_dssp CCEEEEEECCCCHHHHH-HHHHHH-GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEE-EEEECTTST
T ss_pred ccEEEEEECCCChhHHH-HHHHHH-HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEE-EEEECCCCC
Confidence 57899999997543221 122111 2258999999887641 233333322 2222 2245554 999999863
No 255
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.21 E-value=0.028 Score=41.54 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCCcEEEEeCCCCCCh-----hHHHHHH-HhhhhcCCeEEEecCCCcccHHHH-HHHHHHhHhc-C---CceeeEEeccC
Q psy9977 116 KDVDYLIIDTPPGTSD-----EHITVME-CLREVQCDGAVLVTTPQAVSIEDV-RKEITFCKKT-N---IKILGLIENMS 184 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~-----~~~~~l~-~~~~~~ad~viiv~~~~~~~~~~~-~~~~~~l~~~-~---~~~~g~v~N~~ 184 (192)
....+.|+|+|+..+. .....+. .+....+|.+++|.+.+....... ..+++.+... + ...+-+|+||.
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~ 161 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence 3557899999975321 1111121 111235799999965543323222 2344444432 2 12344899999
Q ss_pred ccC
Q psy9977 185 GYT 187 (192)
Q Consensus 185 ~~~ 187 (192)
|..
T Consensus 162 Dl~ 164 (262)
T 3def_A 162 QFS 164 (262)
T ss_dssp TCC
T ss_pred ccC
Confidence 863
No 256
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.20 E-value=0.008 Score=43.29 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=29.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
.+.++.|-.|+||||.+..|+..|...|++|.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 34444588889999999999999999999996654
No 257
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.18 E-value=0.005 Score=43.07 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=25.2
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
..++.|+++ |..|+||||++..||..+ .| .-++|+|
T Consensus 8 ~~~~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 8 PKGINILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CSSCEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCCCEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 345566666 677899999998888753 24 4457776
No 258
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.15 E-value=0.0081 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
...|+++ |..|+||||+.-.|.
T Consensus 175 ~~ki~lv-G~~nvGKSSLin~l~ 196 (436)
T 2hjg_A 175 VIQFCLI-GRPNVGKSSLVNAML 196 (436)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHH
T ss_pred CcEEEEE-cCCCCCHHHHHHHHh
Confidence 4567777 788899999886664
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.14 E-value=0.0052 Score=42.38 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=24.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.+.++.|-.|+||||++..|+.. .....+++.|.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 445566688899999999888872 23455677663
No 260
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.13 E-value=0.017 Score=40.35 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=40.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHH-HHHHHHhHhc--CCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDV-RKEITFCKKT--NIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+...... . .......+|.+++|.+.. ..+...+ ..+++.++.. +.+++ +|.||.|..
T Consensus 69 ~~~~~~i~Dt~G~~~~~~--~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 140 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDR--L-RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLR 140 (194)
T ss_dssp EEEEEEEEEECCSGGGTT--T-GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEE-EEEECGGGC
T ss_pred EEEEEEEEECCCcHHHHH--H-hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhc
Confidence 356678999987432211 1 111122589988888765 4455554 4455555543 45554 999999853
No 261
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.13 E-value=0.0098 Score=45.34 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=28.7
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+..++.+.++++-.|+||||++..||..+ ..-+|.+|..
T Consensus 5 ~~~~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 44 (316)
T 3foz_A 5 SKASLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDSA 44 (316)
T ss_dssp --CCCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCTT
T ss_pred ccCCCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEecccc
Confidence 344555566677888899999999998774 3567888754
No 262
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.10 E-value=0.0044 Score=43.77 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=26.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
++.|++. |-.|+||||++..|+..+ .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 4566666 667899999999998877 4677766553
No 263
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.09 E-value=0.0068 Score=46.89 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=31.0
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~~ 46 (192)
+..+.+..|+||||++.++|...+. .|.+|++||++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4445588899999999999988655 5889999999853
No 264
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.09 E-value=0.0082 Score=41.44 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=27.8
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh-------CCCeEEEEee
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD-------KGFKVGILDI 43 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~-------~g~~vlliD~ 43 (192)
+.+.++ |..|+|||+++..++..+.. .+.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 445444 88899999999999999987 4666766665
No 265
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.08 E-value=0.0074 Score=42.71 Aligned_cols=35 Identities=43% Similarity=0.464 Sum_probs=25.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..+|+++ |..|+||||++..|+..+ |..+ +|+|..
T Consensus 12 ~~iIglt-G~~GSGKSTva~~L~~~l---g~~v--id~D~~ 46 (192)
T 2grj_A 12 HMVIGVT-GKIGTGKSTVCEILKNKY---GAHV--VNVDRI 46 (192)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHHH---CCEE--EEHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHhc---CCEE--EECcHH
Confidence 4567777 667899999998887654 6554 888744
No 266
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.08 E-value=0.023 Score=40.32 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=40.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHH-HHHHHHhHhc--CCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDV-RKEITFCKKT--NIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+...... +....-..+|.+++|.+.. ..+...+ ..+++.+++. +.+++ +|.||.|..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~---~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDN---VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTT---TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE-EEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhH---HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEEechhhc
Confidence 356788999987432111 1111112589888888775 4456665 4555666542 45544 899999863
No 267
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.07 E-value=0.0044 Score=46.74 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+++.+.+++|-.|+||||++..|+..+. .....|+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~ 69 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTF 69 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHh
Confidence 34567778889999999999999987652 24567888644
No 268
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.03 E-value=0.011 Score=41.99 Aligned_cols=31 Identities=39% Similarity=0.399 Sum_probs=27.4
Q ss_pred EeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 12 ~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
+-|--|+||||.+..|+.+|.++|++|.+..
T Consensus 5 ~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4477789999999999999999999997764
No 269
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.95 E-value=0.0052 Score=42.20 Aligned_cols=33 Identities=36% Similarity=0.683 Sum_probs=24.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|++|+++ |-.|+||||++..||..+ |.. ++|.|
T Consensus 2 ~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~d 34 (173)
T 1e6c_A 2 TEPIFMV-GARGCGMTTVGRELARAL---GYE--FVDTD 34 (173)
T ss_dssp CCCEEEE-SCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEccc
Confidence 4566666 678899999999998876 444 57766
No 270
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.92 E-value=0.0032 Score=44.91 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=28.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
+|+|. |-.|+||||++..|+..+...|.+|.++.
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44554 77789999999999999998898888775
No 271
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.92 E-value=0.0034 Score=52.67 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
++|-+=|||||+-.+.. ......+. .+|.+++|+++...-..++...++.+.+.++|.+ +++||.|..
T Consensus 65 ~~~~iNlIDTPGH~DF~-~Ev~raL~--~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~ 132 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFL-AEVYRSLS--VLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQN 132 (638)
T ss_dssp SSCBCCCEECCCSSSTH-HHHHHHHT--TCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSS
T ss_pred CCEEEEEEECCCcHHHH-HHHHHHHH--HhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccc
Confidence 57788899999765432 23322222 3999999999998888889999999999999987 899999873
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.91 E-value=0.0077 Score=44.49 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=24.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++|+++ |-.|+||||+|..||..+ |. .+++.|.
T Consensus 2 ~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred eEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 455555 778899999999998776 33 3577774
No 273
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.90 E-value=0.0088 Score=41.22 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD 33 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~ 33 (192)
+.+ ++.|..|+|||+++..++..+.+
T Consensus 44 ~~v-ll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNP-ILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEE-EEESCGGGCHHHHHHHHHHHHHT
T ss_pred Cce-EEECCCCCCHHHHHHHHHHHHHh
Confidence 445 45577899999999999999877
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.90 E-value=0.0068 Score=41.45 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=23.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++|++. |-.|+||||++..|+..+ |+. ++|.|.
T Consensus 2 ~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 445554 788899999999888776 444 467764
No 275
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.86 E-value=0.0061 Score=44.94 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=28.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
++.+.++.|..|+||||++..|+..+. ..+.++|.|..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r 69 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFR 69 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHH
Confidence 345556668899999999999987653 456778888654
No 276
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.86 E-value=0.042 Score=45.05 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=42.3
Q ss_pred CCCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcC--CceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTN--IKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~--~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+.-... ....+. ++|.+++|++... .+.....++.+...+ .+++ +|.||.|.
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~-----~~d~ii~V~D~s~--~~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl 162 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMT-----RSSVYMLLLDSRT--DSNKHYWLRHIEKYGGKSPVI-VVMNKIDE 162 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHH-----SSEEEEEEECGGG--GGGHHHHHHHHHHHSSSCCEE-EEECCTTT
T ss_pred ceEEEEEEECCcHHHHHHHHHHHcc-----CCcEEEEEEeCCC--chhHHHHHHHHHHhCCCCCEE-EEEECCCc
Confidence 46889999999843221 112222 4999999997753 355666677776543 6665 99999986
No 277
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.85 E-value=0.0099 Score=45.33 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=31.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+.++ |..|+||||++..++..+...|.++.++++.
T Consensus 38 ~~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SSEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 345555 6678999999999999999889999999875
No 278
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.83 E-value=0.0012 Score=54.86 Aligned_cols=67 Identities=19% Similarity=0.090 Sum_probs=36.1
Q ss_pred CCCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCCccc-------HHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQAVS-------IEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~~~~-------~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... ...+. .+|.+|+|++..... ...+.+.+..+...+++.+-+++||.|.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~-----~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGAS-----SADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp ------CCEEESSSEEEEECCC------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHh-----hCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 467889999997432111 11222 389999998886532 4555666677777888755589999986
Q ss_pred C
Q psy9977 187 T 187 (192)
Q Consensus 187 ~ 187 (192)
.
T Consensus 328 ~ 328 (592)
T 3mca_A 328 M 328 (592)
T ss_dssp G
T ss_pred c
Confidence 3
No 279
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.83 E-value=0.0062 Score=43.41 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=27.6
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHH-----hCC-CeEEEEeeC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLK-----DKG-FKVGILDID 44 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la-----~~g-~~vlliD~d 44 (192)
|.++.|..|+|||+.|..++..++ ++| +++.+..+|
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 444558888999999999877775 678 777777665
No 280
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.82 E-value=0.0056 Score=43.52 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=26.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++.+|+++ |..|+||||++..|+..+. .+.+++.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 45677777 6668999999988775432 5778888843
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.80 E-value=0.0059 Score=42.17 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=24.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
|++|+++ +-.|+||||++..||..+ |. .++|.|.
T Consensus 4 m~~i~i~-G~~GsGKsTla~~La~~l---~~--~~~d~d~ 37 (175)
T 1via_A 4 AKNIVFI-GFMGSGKSTLARALAKDL---DL--VFLDSDF 37 (175)
T ss_dssp -CCEEEE-CCTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CC--CEEcccH
Confidence 4556665 778899999999998876 33 4577763
No 282
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.80 E-value=0.011 Score=45.44 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=26.9
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++.+.|. +.|-.|+||||++..||..+ ...++++|..
T Consensus 3 ~m~~~i~-i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIF-LMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCCEEEE-EECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCCcEEE-EECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 3444554 45778899999999998765 3677898854
No 283
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.80 E-value=0.0081 Score=42.59 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=24.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
|.+|+++ |..|+||||++..||. .|..+ +|.|.
T Consensus 2 ~~~i~l~-G~~GsGKST~~~~La~----lg~~~--id~d~ 34 (206)
T 1jjv_A 2 TYIVGLT-GGIGSGKTTIANLFTD----LGVPL--VDADV 34 (206)
T ss_dssp CEEEEEE-CSTTSCHHHHHHHHHT----TTCCE--EEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHH----CCCcc--cchHH
Confidence 4677777 6678999999988865 46654 68774
No 284
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.77 E-value=0.014 Score=41.65 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=27.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
++-|+|= |--|+||||.+..|+.+|. +|++|.+.-
T Consensus 2 ~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 2 SAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 4555555 6668999999999999996 588887653
No 285
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.77 E-value=0.15 Score=37.76 Aligned_cols=20 Identities=40% Similarity=0.775 Sum_probs=16.1
Q ss_pred EEEEEEeCCCCccHhHHHHHH
Q psy9977 7 HVILVLSGKGGVGKSTVSTQL 27 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~l 27 (192)
-.|+++ |..|+||||+.-.|
T Consensus 9 ~~I~vv-G~~g~GKSTLin~L 28 (274)
T 3t5d_A 9 FTLMVV-GESGLGKSTLINSL 28 (274)
T ss_dssp EEEEEE-ECTTSSHHHHHHHH
T ss_pred EEEEEE-CCCCCCHHHHHHHH
Confidence 457777 78899999999765
No 286
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.079 Score=41.05 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=17.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
...+++++ |..|+||||+.-.|+
T Consensus 166 ~~~~v~lv-G~~gvGKSTLin~L~ 188 (357)
T 2e87_A 166 EIPTVVIA-GHPNVGKSTLLKALT 188 (357)
T ss_dssp SSCEEEEE-CSTTSSHHHHHHHHC
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHh
Confidence 44567777 678999999997774
No 287
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.76 E-value=0.011 Score=43.18 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=27.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCe-EEEE
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFK-VGIL 41 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~-vlli 41 (192)
+.|+|. |-.|+||||.+..|+..|...|++ |.+.
T Consensus 28 ~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 455555 777899999999999999999999 5444
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.75 E-value=0.0076 Score=42.09 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=23.4
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.++.|-.|+||||++..|+..+ |..+ +|.|
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l---~~~~--i~~D 37 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL---RLPL--LSKD 37 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH---TCCE--EEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc---CCeE--ecHH
Confidence 344555778899999999999877 5544 5555
No 289
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.75 E-value=0.016 Score=47.48 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+...... .....+. .+|.+++|+++..........++..+...+++++ +++||.|.
T Consensus 80 ~~~~i~liDTPG~~df~~-~~~~~l~--~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~Dl 146 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTE-DTYRTLT--AVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMDR 146 (528)
T ss_dssp TTEEEEEECCCCSTTCCH-HHHHGGG--GCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTTS
T ss_pred CCEEEEEEECCCchhHHH-HHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCC
Confidence 467899999998654322 2333322 5999999999987767777788888888888876 99999986
No 290
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.71 E-value=0.0096 Score=42.08 Aligned_cols=36 Identities=33% Similarity=0.408 Sum_probs=26.0
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.+++|++. |-.|+||||++..|+..+ |. .++|+|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 4456666666 777899999999888764 54 457766
No 291
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.71 E-value=0.0055 Score=43.37 Aligned_cols=32 Identities=44% Similarity=0.469 Sum_probs=23.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++|+++ |..|+||||++..||. + |.++ +|+|.
T Consensus 2 ~~i~i~-G~~GsGKSTl~~~L~~-~---g~~~--i~~d~ 33 (204)
T 2if2_A 2 KRIGLT-GNIGCGKSTVAQMFRE-L---GAYV--LDADK 33 (204)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHH-T---TCEE--EEHHH
T ss_pred eEEEEE-CCCCcCHHHHHHHHHH-C---CCEE--EEccH
Confidence 567777 6678999999988876 3 6554 66663
No 292
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.67 E-value=0.016 Score=43.30 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=28.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhC----------CCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDK----------GFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~----------g~~vlliD~d~ 45 (192)
.+++++ +..|+||||++..++..++.. +.+|++++...
T Consensus 31 ~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 31 TVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 455555 888999999999999977642 35777777653
No 293
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.63 E-value=0.0019 Score=45.71 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=38.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHH-HHHHHhHhc--CCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVR-KEITFCKKT--NIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~-~~~~~l~~~--~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+.......... . ...+|.+++|.+.. ..+...+. .+++.+... +.+++ +|.||.|.
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~-~--~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pii-lv~NK~Dl 146 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPL-S--YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDL 146 (204)
Confidence 3556678888864332111110 1 11488888888764 44555554 455555543 55554 89999886
No 294
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.013 Score=42.41 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~ 45 (192)
.+++++ +..|+||||++..+|..... .+.+|++++.+.
T Consensus 25 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 455565 78899999999999986443 378999999875
No 295
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.63 E-value=0.011 Score=42.58 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|++. +.+|+++ |..|+||||++..|+..+ |. -++|.|
T Consensus 1 mm~~-~~~i~i~-G~~GsGKSTl~~~L~~~~---g~--~~~d~g 37 (227)
T 1cke_A 1 MTAI-APVITID-GPSGAGKGTLCKAMAEAL---QW--HLLDSG 37 (227)
T ss_dssp --CC-SCEEEEE-CCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CCCC-CeEEEEE-CCCCCCHHHHHHHHHHHh---CC--CcccCc
Confidence 4443 3577877 677899999999888765 33 335655
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.63 E-value=0.01 Score=41.93 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=25.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+++.|+++ |-.|+||||++..||..+ |... +|.|
T Consensus 24 ~~~~i~l~-G~~GsGKsTl~~~La~~l---~~~~--i~~d 57 (199)
T 3vaa_A 24 AMVRIFLT-GYMGAGKTTLGKAFARKL---NVPF--IDLD 57 (199)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHH---TCCE--EEHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHc---CCCE--Ecch
Confidence 34566666 778899999999999887 4443 5665
No 297
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.61 E-value=0.013 Score=43.91 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=25.4
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.+++|+++ |..|+||||++..|+. .|..+ +|+|.
T Consensus 73 ~~~~iI~I~-G~~GSGKSTva~~La~----lg~~~--id~D~ 107 (281)
T 2f6r_A 73 SGLYVLGLT-GISGSGKSSVAQRLKN----LGAYI--IDSDH 107 (281)
T ss_dssp TTCEEEEEE-ECTTSCHHHHHHHHHH----HTCEE--EEHHH
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHH----CCCcE--EehhH
Confidence 345666666 6778999999988883 36654 78874
No 298
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.58 E-value=0.14 Score=36.79 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh---cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK---TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~---~~~~~~g~v~N~~~~ 186 (192)
..+.+-|.|+++.-......... -+.+|.+++|.+-. ..+.+.+...++.+.. .++++ -+|.||.|.
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~---~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~pi-ilVgNK~Dl 130 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSY---IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII-MLVGNKTDL 130 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHH---HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEE-EEEEECTTC
T ss_pred eEEEEEEEECCCchhhhhHHHHH---hccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeE-EEEeeccch
Confidence 45677889998654332211111 12588888877654 6677777777777653 34544 488899885
No 299
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.49 E-value=0.011 Score=45.21 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=29.7
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHH------------hCC----CeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLK------------DKG----FKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la------------~~g----~~vlliD~d~~ 46 (192)
+..+.+..|+|||+++.++|...+ +.| .+|++||++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 444557789999999999998743 345 79999999854
No 300
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.48 E-value=0.022 Score=41.63 Aligned_cols=40 Identities=35% Similarity=0.260 Sum_probs=29.7
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC-----CCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK-----GFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-----g~~vlliD~d~ 45 (192)
.+.+|+++ |..|+||||++..|+..+..- ..++.+++.|.
T Consensus 24 ~g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 24 RPFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp CSEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 45678888 777899999999998877321 34677888774
No 301
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.47 E-value=0.02 Score=41.64 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~~ 46 (192)
..+++++ +..|+||||+...++.... ..+.++.+++.+..
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 4566776 7788999999999997666 67888888887643
No 302
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.47 E-value=0.023 Score=41.32 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=27.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
+++.|+|. |-.|+||||++..|+..+.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 44556555 77789999999999999998 8888654
No 303
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.47 E-value=0.011 Score=43.06 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=25.7
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC----CCeEEEEe
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK----GFKVGILD 42 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~----g~~vlliD 42 (192)
.+.++.|-.|+||||++..|+..|... |++|.+..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 344455888899999999999999988 99996543
No 304
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.46 E-value=0.031 Score=39.81 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=43.4
Q ss_pred CCCcEEEEeCCCCCCh-------hH-HHHHHHhh--hhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCc
Q psy9977 116 KDVDYLIIDTPPGTSD-------EH-ITVMECLR--EVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSG 185 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~-------~~-~~~l~~~~--~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~ 185 (192)
..+.+.|+|+|+.... .. ...+..+. ...+|.+++|++....--.....+++.+...+.+++ +|+||.|
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~D 155 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKCD 155 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEeccc
Confidence 4678999999974321 11 11111111 112677888888765433455567777777777766 9999988
Q ss_pred c
Q psy9977 186 Y 186 (192)
Q Consensus 186 ~ 186 (192)
.
T Consensus 156 l 156 (223)
T 4dhe_A 156 K 156 (223)
T ss_dssp G
T ss_pred c
Confidence 5
No 305
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.44 E-value=0.009 Score=41.51 Aligned_cols=33 Identities=39% Similarity=0.621 Sum_probs=24.6
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++|+++ |-.|+||||++..||..+ |.. ++|.|.
T Consensus 3 ~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 3 PKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp CSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 445555 788899999999998876 444 577774
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.43 E-value=0.013 Score=40.09 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=25.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.|+.|+++ +-.|+||||++..||..| |.++ +|+|.
T Consensus 6 ~~~~i~l~-G~~GsGKSTva~~La~~l---g~~~--id~D~ 40 (168)
T 1zuh_A 6 HMQHLVLI-GFMGSGKSSLAQELGLAL---KLEV--LDTDM 40 (168)
T ss_dssp --CEEEEE-SCTTSSHHHHHHHHHHHH---TCCE--EEHHH
T ss_pred ccceEEEE-CCCCCCHHHHHHHHHHHh---CCCE--EEChH
Confidence 45677776 777899999998888765 5554 67763
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.40 E-value=0.013 Score=41.96 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=24.4
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
+.++.|++. |-.|+||||++..||..+ |.. ++|.
T Consensus 2 ~~~~~I~l~-G~~GsGKsT~a~~La~~l---~~~--~i~~ 35 (220)
T 1aky_A 2 SESIRMVLI-GPPGAGKGTQAPNLQERF---HAA--HLAT 35 (220)
T ss_dssp -CCCEEEEE-CCTTSSHHHHHHHHHHHH---CCE--EEEH
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cce--EEeh
Confidence 455666666 667899999999998876 443 4665
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.40 E-value=0.0088 Score=41.05 Aligned_cols=33 Identities=42% Similarity=0.591 Sum_probs=24.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+++|+++ |..|+||||++..||..+ |. .++|.|
T Consensus 4 ~~~i~l~-G~~GsGKSTl~~~La~~l---~~--~~id~d 36 (173)
T 1kag_A 4 KRNIFLV-GPMGAGKSTIGRQLAQQL---NM--EFYDSD 36 (173)
T ss_dssp CCCEEEE-CCTTSCHHHHHHHHHHHT---TC--EEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEecc
Confidence 3566666 677899999998888765 33 457766
No 309
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.38 E-value=0.019 Score=41.28 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=27.9
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCC-eEEEE
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGF-KVGIL 41 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~-~vlli 41 (192)
++.|+|- |-.|+||||.+..|+.+|...|+ +|.+.
T Consensus 3 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 3 SKYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 3455555 67789999999999999999998 66443
No 310
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.38 E-value=0.011 Score=41.30 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=24.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+|+++ |..|+||||++..|+.. .+.....+|.|
T Consensus 9 g~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TEEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 3455555 77889999999888764 34455667665
No 311
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.36 E-value=0.01 Score=42.00 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=24.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++|+++ +..|+||||++..||..+ | .-++|.|.
T Consensus 3 ~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 3 GIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 356665 777899999999998776 3 34577763
No 312
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.35 E-value=0.021 Score=42.97 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=31.9
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.|+ |..|+|||++|..+|..+...+.++..+++...
T Consensus 49 ~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 49 SFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 45555 778899999999999999888888999998754
No 313
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.35 E-value=0.045 Score=44.03 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=47.2
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHH-------HHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIE-------DVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~-------~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+.... .......+ ..+|.+++|++....... ...+.+..+...+++.+-+++||.|..
T Consensus 83 ~~~~~~iiDtPGh~~f-~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDF-IKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTH-HHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHH-HHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 4678999999975432 22333332 369999999998765433 555666666677887555899999864
No 314
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=95.34 E-value=0.037 Score=44.39 Aligned_cols=51 Identities=31% Similarity=0.361 Sum_probs=39.0
Q ss_pred CCcEEEEEEeC---CCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCCCCCcccCCC
Q psy9977 4 GVKHVILVLSG---KGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIE 57 (192)
Q Consensus 4 ~~~~~i~~~s~---~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~~~~~~~~~~ 57 (192)
+..|.|.|++. .-|.||||++..|++.|.+.|+++.+. .++||+--.||..
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSlGP~FGiK 94 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSLGPTLGLK 94 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCHHHHHHSC
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCCCCcCCcc
Confidence 35677877654 459999999999999999999999654 4556665555544
No 315
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.34 E-value=0.033 Score=42.46 Aligned_cols=42 Identities=31% Similarity=0.269 Sum_probs=32.4
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHh-CC-CeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKD-KG-FKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g-~~vlliD~d~~ 46 (192)
+.+.+|++. |..|+||||++..|+..+.. .| .++.++..|..
T Consensus 88 ~~g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 345677776 77789999999999999876 35 57888877743
No 316
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.28 E-value=0.022 Score=40.75 Aligned_cols=31 Identities=35% Similarity=0.543 Sum_probs=23.0
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+|+++ |..|+||||++..|+. .|.. ++|.|
T Consensus 5 ~~I~i~-G~~GSGKST~~~~L~~----lg~~--~id~D 35 (218)
T 1vht_A 5 YIVALT-GGIGSGKSTVANAFAD----LGIN--VIDAD 35 (218)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHH----TTCE--EEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHH----cCCE--EEEcc
Confidence 456655 7788999999988865 4655 57776
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.28 E-value=0.016 Score=40.43 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=23.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.|++. |-.|+||||++..|+..+ |.. ++|.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~~--~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GYT--HLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--EEeHH
Confidence 445554 788899999999998765 444 46665
No 318
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=95.28 E-value=0.055 Score=43.14 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=48.3
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.+.|+|+|+.... .......+ ..+|.+++|++..........+.+..++..+.+.+-+++||.|..
T Consensus 102 ~~~~~~iiDtpGh~~f-~~~~~~~~--~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY-TRNMATGA--STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCCSGGG-HHHHHHHH--TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCChHHH-HHHHHHHH--hhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 4567999999975432 22222222 369999999998876666677777777777876555899999863
No 319
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.27 E-value=0.011 Score=39.60 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=28.6
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|.++ |..|+|||++|..++....+.+.+.. +++...
T Consensus 27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP 62 (145)
T ss_dssp EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence 4444 77899999999999888777788877 888743
No 320
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.25 E-value=0.012 Score=40.13 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=20.3
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEE
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVG 39 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vl 39 (192)
+.++.|-.|+||||++..| .+.|+.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 4445588899999999887 45687764
No 321
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.23 E-value=0.019 Score=44.59 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=31.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhC--------CCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDK--------GFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~--------g~~vlliD~d~ 45 (192)
++.+. +.|..|+|||+++..++..+.+. +..++.+++..
T Consensus 45 ~~~vl-l~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNL-FLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEE-EEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEE-EECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 34444 45888999999999999998775 88999888753
No 322
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.22 E-value=0.0091 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.213 Sum_probs=17.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVG 39 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vl 39 (192)
+++.|.+. |-.|+||||++..|+..+ |..++
T Consensus 4 ~~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 4 RSPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp -CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 34455555 888899999998887654 55554
No 323
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.21 E-value=0.32 Score=38.73 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=17.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
...|+++ |..|+||||+.-.|.
T Consensus 180 ~~kvaiv-G~~gvGKSTLln~l~ 201 (439)
T 1mky_A 180 AIKVAIV-GRPNVGKSTLFNAIL 201 (439)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHh
Confidence 3577777 788999999987765
No 324
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.18 E-value=0.022 Score=52.62 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=33.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.++.+..|+||||++.++|..+++.|.+|++++++...
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 344458899999999999999999999999999998653
No 325
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.18 E-value=0.014 Score=40.41 Aligned_cols=32 Identities=41% Similarity=0.662 Sum_probs=23.0
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.|. +.|-.|+||||++..||..+ |.. ++|.|
T Consensus 12 ~~i~-i~G~~GsGKst~~~~l~~~~---~~~--~~~~d 43 (180)
T 3iij_A 12 PNIL-LTGTPGVGKTTLGKELASKS---GLK--YINVG 43 (180)
T ss_dssp CCEE-EECSTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred CeEE-EEeCCCCCHHHHHHHHHHHh---CCe--EEEHH
Confidence 3455 45888899999999998776 444 45555
No 326
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.17 E-value=0.028 Score=52.05 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=34.2
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+..+.+..|+||||++.++|...++.|.+|++||++...
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 444558899999999999999999999999999999654
No 327
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.13 E-value=0.09 Score=41.70 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=24.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.+.+.++.|-.|+||||++..|+..+ | ..+||.|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~---~--~~~i~~D~ 291 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDT 291 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence 34566666889999999998887543 3 33455553
No 328
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.11 E-value=0.12 Score=40.25 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=17.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLA 28 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA 28 (192)
.++|+++ |..|+||||+.-.|+
T Consensus 179 ~~~V~lv-G~~naGKSTLln~L~ 200 (364)
T 2qtf_A 179 IPSIGIV-GYTNSGKTSLFNSLT 200 (364)
T ss_dssp CCEEEEE-CBTTSSHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHH
Confidence 3457777 778999999998775
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.10 E-value=0.017 Score=40.30 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=24.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+++|++. |-.|+||||++..||..+ |.. ++|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~~--~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GYT--HLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CCe--EEcHH
Confidence 4566666 667899999999998876 444 46665
No 330
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.04 E-value=0.016 Score=41.57 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=24.9
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
..+..|+|. |-.|+||||++..||..+ |..+ +|.
T Consensus 3 ~~~~~I~l~-G~~GsGKsT~a~~La~~l---~~~~--i~~ 36 (217)
T 3be4_A 3 SKKHNLILI-GAPGSGKGTQCEFIKKEY---GLAH--LST 36 (217)
T ss_dssp GGCCEEEEE-ECTTSSHHHHHHHHHHHH---CCEE--EEH
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHh---CceE--Eeh
Confidence 344566666 666899999999999887 5554 555
No 331
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.03 E-value=0.041 Score=40.06 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=31.9
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+ |-|+.+.=|+||||.+..+++.+..+|++|+++-..
T Consensus 18 ~g~-l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQ-IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp CCE-EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred ceE-EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344 555556667999999999999999999999999744
No 332
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.02 E-value=0.02 Score=47.15 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=32.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~ 46 (192)
...+|+++ |..|+||||++..||..+... |.++.++|.|..
T Consensus 368 ~G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 34566666 677899999999999999864 467888888743
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.00 E-value=0.25 Score=38.32 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=27.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEe
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILD 42 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD 42 (192)
...++|+ |..|+||||+...++..+... |.+++.++
T Consensus 123 ~g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 123 RGLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 3455555 778899999999999998874 77776555
No 334
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.99 E-value=0.032 Score=46.23 Aligned_cols=33 Identities=36% Similarity=0.558 Sum_probs=29.5
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
+.++.|-.|+||||++..++..+.+.|++|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 455668889999999999999999999999987
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.97 E-value=0.019 Score=40.49 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=23.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
..|++. |-.|+||||++..||..+ |..+ +|.|
T Consensus 21 ~~I~l~-G~~GsGKST~a~~La~~l---~~~~--i~~d 52 (201)
T 2cdn_A 21 MRVLLL-GPPGAGKGTQAVKLAEKL---GIPQ--ISTG 52 (201)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---TCCE--EEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCcE--Eehh
Confidence 345554 778899999999998876 5554 6654
No 336
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.82 E-value=0.044 Score=45.14 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=43.9
Q ss_pred cEEEEeCCCCCChh---------HHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 119 DYLIIDTPPGTSDE---------HITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 119 D~IiiD~~~~~~~~---------~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.++|+|+|+..... ........ ...+|.+++|+++... .......+++.+...+.+++ +|+||.|..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~-l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi-lVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWF-AERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR-VVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHH-HHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE-EEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHH-HHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE-EEEECCCcc
Confidence 57999999865411 11111110 1249999999998763 45566777788877666655 999999863
No 337
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.81 E-value=0.042 Score=41.33 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=28.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCC----eEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGF----KVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~----~vlliD~d 44 (192)
.-+.++ |..|+|||++|..+|..+...+. ++..+++.
T Consensus 68 ~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 68 LHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 345555 67789999999999999988765 67666654
No 338
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.80 E-value=0.021 Score=44.17 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=30.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhC---CCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDK---GFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~---g~~vlliD~d 44 (192)
.+.+.++ |..|+||||++..++..+... +..++.+++.
T Consensus 45 ~~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 45 PNNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3445554 788999999999999998875 7899999875
No 339
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.78 E-value=0.027 Score=43.01 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=25.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+.+++|-.|+||||++..||..+ ..-+|++|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 345556777899999999998764 3567888844
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.78 E-value=0.035 Score=39.72 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=29.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~ 45 (192)
..+++++ +..|+||||++..++..+.. .+.++++++...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4566666 77789999999999986654 355788888763
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.77 E-value=0.019 Score=40.23 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=23.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++|++. |-.|+||||++..||..+ |. .++|.|
T Consensus 13 ~~I~l~-G~~GsGKsT~a~~L~~~l---~~--~~i~~d 44 (199)
T 2bwj_A 13 KIIFII-GGPGSGKGTQCEKLVEKY---GF--THLSTG 44 (199)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 455555 778899999999998876 33 456665
No 342
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.77 E-value=0.021 Score=42.94 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=24.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+.++.|-.|+||||++..|+..+ .| ..+++.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~~--~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--PG--FYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--TT--EEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--CC--cEEeccc
Confidence 3455566888999999998888742 23 4567766
No 343
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.76 E-value=0.024 Score=43.85 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=29.1
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhC------CCeEEEEeeCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDK------GFKVGILDIDL 45 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~------g~~vlliD~d~ 45 (192)
..++.|..|+||||++..++..+.+. +..+..+++..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 34455888999999999999999765 67777777653
No 344
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.76 E-value=0.03 Score=44.80 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=30.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhC--CCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDK--GFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~--g~~vlliD~d 44 (192)
+-+.++ |..|+||||++..++..+... +.+++++++.
T Consensus 131 ~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 345555 778899999999999999876 8899998875
No 345
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.69 E-value=0.011 Score=45.25 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.3
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.++.+..|+|||+++..+|.. .|.+|++++++
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 356699999999999999987 68899999983
No 346
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.62 E-value=0.019 Score=40.59 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=26.0
Q ss_pred EEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 10 ~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.++.|..|+|||+++..++..+...++++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 34447788999999999999987766554444444
No 347
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.62 E-value=0.044 Score=51.52 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=34.1
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.++.+..|+||||++.++|..+++.|.+|+++|++...
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 444558899999999999999999999999999998653
No 348
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.61 E-value=0.041 Score=42.60 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=30.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHh---C---CCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKD---K---GFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~---~---g~~vlliD~d~ 45 (192)
..++.++ +..|+||||++..++..++. . |-+|++||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4566666 67789999999999988743 2 35889999864
No 349
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.57 E-value=0.046 Score=44.07 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++.+.++.|-.|+||||++..||..+...+.++..++.|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 344556668889999999999999998888888777654
No 350
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.56 E-value=0.03 Score=39.29 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=19.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
.|++. |-.|+||||++..||..+.
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHHC
T ss_pred EEEEE-CCCccCHHHHHHHHHHhcC
Confidence 35555 7788999999999998874
No 351
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.54 E-value=0.034 Score=43.96 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=29.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHh------CCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKD------KGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~------~g~~vlliD~d~ 45 (192)
.++.++ +..|+||||++..++..... .+.+|+++|...
T Consensus 179 ei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 455555 77889999999998876654 367899999874
No 352
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.53 E-value=0.028 Score=41.50 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=30.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.+ .|..|+|||++|..++..+.+.+.++..+++...
T Consensus 32 vll-~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 32 VLI-IGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred EEE-ECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 444 4788999999999999888777889999988744
No 353
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.53 E-value=0.026 Score=42.52 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=27.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++.+.++ |-.|+|||++|..+|..+ |.+++.+++.
T Consensus 36 p~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~~ 70 (293)
T 3t15_A 36 PLILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSAG 70 (293)
T ss_dssp CSEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeHH
Confidence 3455555 777899999999999887 7788888763
No 354
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.52 E-value=0.042 Score=43.00 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=30.4
Q ss_pred EEEEE--eCCCCccHhHHHHHHHHHHHhC------CCeEEEEeeCC
Q psy9977 8 VILVL--SGKGGVGKSTVSTQLALGLKDK------GFKVGILDIDL 45 (192)
Q Consensus 8 ~i~~~--s~~gg~GkTt~a~~lA~~la~~------g~~vlliD~d~ 45 (192)
...++ .|..|+||||++..++..+... +..++.+++..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 34455 6999999999999999988764 67888888753
No 355
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.48 E-value=0.035 Score=40.17 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=24.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.++.|.|. |..|+||||++..||..+ |.. +++.|
T Consensus 15 ~~~~I~l~-G~~GsGKsT~a~~La~~l---~~~--~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLL-GPPGAGKGTQAPKLAKNF---CVC--HLATG 48 (233)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--eecHH
Confidence 34566666 667899999999999887 333 46654
No 356
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.47 E-value=0.066 Score=41.45 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=30.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeCCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDIDLC 46 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d~~ 46 (192)
.+.++ |..|+||||++..++..+... +..++.+++...
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 45555 778899999999999998877 688988887543
No 357
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.45 E-value=0.034 Score=40.59 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
+.+|+++ |..|+||||++..|+..+
T Consensus 27 ~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4567666 778899999999999776
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.44 E-value=0.032 Score=41.05 Aligned_cols=26 Identities=42% Similarity=0.548 Sum_probs=20.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
.+.+|+++ |-.|+||||++..||..|
T Consensus 26 ~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 34678887 667899999998888654
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.42 E-value=0.017 Score=41.65 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=23.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++.|+|. |-.|+||||++..||..+ |.. ++|.|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~~--~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF---ELK--HLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS---SSE--EEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EEech
Confidence 3455555 778899999999888764 544 45553
No 360
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=94.41 E-value=0.044 Score=40.14 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=31.1
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.+.|++.|+++.||.|+ .+|+.|+++|.+|.+++-+..
T Consensus 19 ~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp ---CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 456789999999998885 577888999999999987754
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.40 E-value=0.036 Score=37.66 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=23.3
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.|+++ |..|+||||++..|+..+ |.++ +|.|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~~--i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIPF--YDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCCE--EEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCCE--EECcH
Confidence 34554 778899999999998876 4444 67663
No 362
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.37 E-value=0.039 Score=45.33 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=25.7
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHH----HHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLAL----GLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~----~la~~g~~vlliD~d 44 (192)
..++|+|+ |-||+||||+|..++. .....-..++.++..
T Consensus 151 ~~~vv~I~-G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs 193 (549)
T 2a5y_B 151 DSFFLFLH-GRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDS 193 (549)
T ss_dssp SSEEEEEE-CSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECC
T ss_pred CceEEEEE-cCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEEC
Confidence 34667766 8899999999998885 222222345556443
No 363
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.36 E-value=0.059 Score=43.27 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCC-eEEEE
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGF-KVGIL 41 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~-~vlli 41 (192)
..++.+-.|+||||++..++.+|.+.|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 5566688999999999999999999887 77776
No 364
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=94.35 E-value=0.082 Score=45.22 Aligned_cols=70 Identities=9% Similarity=-0.018 Sum_probs=47.1
Q ss_pred CCcEEEEeCCCCCCh-----------hHHHHHHHhhhhcCCeEEEecCCCcc-cHHHHHHHHHHhHhcCCceeeEEeccC
Q psy9977 117 DVDYLIIDTPPGTSD-----------EHITVMECLREVQCDGAVLVTTPQAV-SIEDVRKEITFCKKTNIKILGLIENMS 184 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~-----------~~~~~l~~~~~~~ad~viiv~~~~~~-~~~~~~~~~~~l~~~~~~~~g~v~N~~ 184 (192)
..+++++|+|+.... .....+..+....+|.+++|+++... .......+++.+...+.+.+ +|+||.
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvI-lVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTI-GVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEE-EEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEE-EEEeCc
Confidence 457899999986651 11223333334568899999887643 33344467778877788776 999999
Q ss_pred ccC
Q psy9977 185 GYT 187 (192)
Q Consensus 185 ~~~ 187 (192)
|..
T Consensus 228 Dlv 230 (772)
T 3zvr_A 228 DLM 230 (772)
T ss_dssp TSS
T ss_pred ccC
Confidence 974
No 365
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.32 E-value=0.048 Score=37.74 Aligned_cols=33 Identities=39% Similarity=0.640 Sum_probs=23.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++.|+++ |-.|+||||++..||..+ |.. ++|.|
T Consensus 4 g~~I~l~-G~~GsGKST~~~~La~~l---~~~--~i~~d 36 (186)
T 3cm0_A 4 GQAVIFL-GPPGAGKGTQASRLAQEL---GFK--KLSTG 36 (186)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHHH---TCE--EECHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CCe--EecHH
Confidence 3455555 778899999999998776 444 46664
No 366
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.28 E-value=0.028 Score=40.29 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=20.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
.++.|.|. |-.|+||||++..||..+.
T Consensus 4 ~~~~I~l~-G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMIS-GAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEE-ESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 44556666 6678999999999998764
No 367
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.27 E-value=0.048 Score=51.28 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=34.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCG 47 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~ 47 (192)
+.++.+..|+|||+++.++|..++..|.+|+++++....
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~ 772 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcH
Confidence 455569999999999999999999999999999998654
No 368
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.19 E-value=0.056 Score=38.49 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=20.8
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
+.++++|+|+ |+.|+||+|+|-.+...+
T Consensus 8 ~~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 8 GAPRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 3455556555 999999999998876655
No 369
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.18 E-value=0.065 Score=42.01 Aligned_cols=37 Identities=32% Similarity=0.315 Sum_probs=30.7
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
-++++ +..|+||||+...++..+...|.+++++|-+-
T Consensus 37 ~~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 37 NWTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp CEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ceEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34444 77789999999999999988999999998653
No 370
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.13 E-value=0.038 Score=42.58 Aligned_cols=34 Identities=26% Similarity=0.526 Sum_probs=25.5
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++|.++ |-.|+||||++..||..+ +.-+||+|..
T Consensus 41 ~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 445554 667899999999998654 4568999965
No 371
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.05 E-value=0.2 Score=34.84 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=41.5
Q ss_pred CCCcEEEEeCCCCCChhH-----HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHh-----cCCceeeEEeccCc
Q psy9977 116 KDVDYLIIDTPPGTSDEH-----ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKK-----TNIKILGLIENMSG 185 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~-----~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~-----~~~~~~g~v~N~~~ 185 (192)
..+.+.|+|+|+...... ...+. .+|.+++|.+......+...++.+.+.+ .+.+++ +|.||.|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pii-lv~nK~D 140 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFR-----GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE-VFIHKVD 140 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHH-----TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEE-EEEECGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccc-----cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEE-EEEeccc
Confidence 468899999997644211 12333 4999999998876534444444444432 356655 9999998
Q ss_pred c
Q psy9977 186 Y 186 (192)
Q Consensus 186 ~ 186 (192)
.
T Consensus 141 l 141 (196)
T 3llu_A 141 G 141 (196)
T ss_dssp G
T ss_pred c
Confidence 4
No 372
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=94.00 E-value=0.052 Score=39.94 Aligned_cols=35 Identities=37% Similarity=0.605 Sum_probs=30.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.|++.|+++.+|.|+ .+|+.|++.|.+|.++|.+.
T Consensus 2 nK~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 2 NRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 46788999999999998763
No 373
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.98 E-value=0.063 Score=38.69 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=21.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
+++|+|.++ |-.|+||+|.|..||..+
T Consensus 27 ~k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 345777777 667899999999999876
No 374
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.98 E-value=0.74 Score=34.98 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++-|.++ |..|+|||++|..+|..+ .+.+++.+++.
T Consensus 45 ~~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~~ 80 (322)
T 1xwi_A 45 WRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS 80 (322)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred CceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence 3556666 777899999999998876 36677777764
No 375
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.96 E-value=0.12 Score=38.18 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=28.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~d 44 (192)
...+++++ |..|+||||+...++..+... .-++.+.+-+
T Consensus 24 ~g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 24 KMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SSEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 34566666 667899999999999988764 5567665543
No 376
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.92 E-value=0.035 Score=39.53 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=19.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
.+++|++. |-.|+||||++..|+..+
T Consensus 7 ~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 44566665 777899999998887664
No 377
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.90 E-value=0.073 Score=40.17 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCChh-----------H-HHHHHHhhhhcCCeEEEecCC-Ccc-cHHHHHHHHHHhHhcCCceeeEEec
Q psy9977 117 DVDYLIIDTPPGTSDE-----------H-ITVMECLREVQCDGAVLVTTP-QAV-SIEDVRKEITFCKKTNIKILGLIEN 182 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~-----------~-~~~l~~~~~~~ad~viiv~~~-~~~-~~~~~~~~~~~l~~~~~~~~g~v~N 182 (192)
.++++++|+|+..... . ......+ ..+|.+++++++ +.. .......+++.+...+.+.+ +|+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~N 206 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVIT 206 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEc
Confidence 4789999999865311 1 1111112 258988888765 222 11223456666666677765 9999
Q ss_pred cCccC
Q psy9977 183 MSGYT 187 (192)
Q Consensus 183 ~~~~~ 187 (192)
|.|..
T Consensus 207 K~Dl~ 211 (315)
T 1jwy_B 207 KLDLM 211 (315)
T ss_dssp CTTSS
T ss_pred CcccC
Confidence 99864
No 378
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.84 E-value=0.034 Score=38.89 Aligned_cols=32 Identities=28% Similarity=0.220 Sum_probs=25.2
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.|+ |-.|+|||++|..||.. |.++++++...
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 3444 67789999999988754 77899998864
No 379
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.74 E-value=0.036 Score=38.98 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=20.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
.+.+|+++ |..|+||||++..|+..+
T Consensus 5 ~g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 45567777 667899999998887665
No 380
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.69 E-value=0.12 Score=37.80 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+-+.++ |..|+|||+++..+|..+ +.++..+++..
T Consensus 40 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGAE 74 (262)
T ss_dssp CEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence 445555 777899999999998865 56777777653
No 381
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.65 E-value=0.13 Score=40.22 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC-CCeEEEEee
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK-GFKVGILDI 43 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-g~~vlliD~ 43 (192)
....++++ |..|+||||+...|+..+... ..++++++-
T Consensus 135 ~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 44566666 667899999999999998875 567777763
No 382
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=93.63 E-value=0.085 Score=38.65 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|.+-..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+..
T Consensus 1 M~~l~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 41 (256)
T 2d1y_A 1 MGLFAGKGVLVTGGARGIGR-----AIAQAFAREGALVALCDLRPE 41 (256)
T ss_dssp -CTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSTT
T ss_pred CCCCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 44445689999999999887 477788899999999887643
No 383
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=93.57 E-value=0.14 Score=40.60 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=29.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
...++|+|+|+ .||||++.-++..|.+.|++|.++
T Consensus 47 ~~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 47 PAPFVFTVAGT---NGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp CSSEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEeCC---cChHHHHHHHHHHHHHCCCCEEEE
Confidence 45678888854 679999999999999999999765
No 384
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.54 E-value=0.076 Score=42.61 Aligned_cols=67 Identities=10% Similarity=0.204 Sum_probs=46.0
Q ss_pred CcEEEEeCCCCC---------ChhH-HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 118 VDYLIIDTPPGT---------SDEH-ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 118 ~D~IiiD~~~~~---------~~~~-~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.|+|+|+.. +... ...+..+ ..+|.+++|++......+...++++.+...+.+++ +|+||.|..
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~--~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~ 319 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI--DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAV 319 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHH--HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGS
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHH--hhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEEChhcC
Confidence 457899999832 2211 1112121 24899999999887666777778888888887765 999999964
No 385
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=93.52 E-value=0.092 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=32.0
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++-..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+..
T Consensus 3 ~~l~~k~~lVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGA-----AVTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp -CCTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cccCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 3445689999999999986 467888899999999987644
No 386
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.51 E-value=0.075 Score=38.80 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=23.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+++|++ .|-.|+||||++..|+..+ |.. .++.|
T Consensus 28 ~~~~I~l-~G~~GsGKsT~a~~L~~~~---g~~--~is~~ 61 (243)
T 3tlx_A 28 PDGRYIF-LGAPGSGKGTQSLNLKKSH---CYC--HLSTG 61 (243)
T ss_dssp CCEEEEE-ECCTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred CCcEEEE-ECCCCCCHHHHHHHHHHHh---CCe--EEecH
Confidence 3445555 4778899999999998776 443 45553
No 387
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=93.48 E-value=0.088 Score=39.12 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=33.0
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|.+-..|++.|+++.+|.|+ .+|+.|+++|.+|.++|.+..
T Consensus 5 m~~l~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~~~~~ 45 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGR-----SHAVKLAEEGADIILFDICHD 45 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred ccccCCCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEccccc
Confidence 33445689999999999886 578888999999999987643
No 388
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.41 E-value=0.07 Score=36.93 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=19.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
.++++++ |..|+||||++..|+..+.
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 3455555 7788999999999987653
No 389
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=93.38 E-value=0.2 Score=39.90 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=44.2
Q ss_pred cEEEEeCCCCCChhH------HHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 119 DYLIIDTPPGTSDEH------ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 119 D~IiiD~~~~~~~~~------~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
.+.++|+|+...... ......+ ..+|.+++|++. .......++++.+.+.+.+++ +|+||.|..
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piI-vV~NK~Dl~ 153 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYEDDVVNLFKEMEIPFV-VVVNKIDVL 153 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEE-EECCCCTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEE-EEEeCcCCC
Confidence 789999997543210 1111111 159999999988 444566778888888888876 999999864
No 390
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.37 E-value=0.14 Score=36.20 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=31.3
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.++..++ +.-|+||||-....+.....+|++|+++...
T Consensus 18 ~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 18 TRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp -CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 445655555 5566999999999999988999999999754
No 391
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=93.35 E-value=0.13 Score=40.66 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=43.4
Q ss_pred CcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCccc-HHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 118 VDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVS-IEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~-~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.++|+|+.. +........ ...+|.+++|++++... ...+.+.+..++..+.+.+-+++||.|..
T Consensus 83 ~~i~iiDtPGh~-~f~~~~~~~--~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 83 RRVSFIDAPGHE-ALMTTMLAG--ASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp EEEEEEECSSHH-HHHHHHHHC--GGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cEEEEEECCChH-HHHHHHHhh--hhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 578999999742 222222222 22579999999887543 55566666666666765555889999853
No 392
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.34 E-value=0.11 Score=42.58 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=31.3
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.+++++ +..|+||||++..++..+...|.+++++....
T Consensus 282 ~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 282 SIILAT-GATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 455555 78889999999999999888899998887653
No 393
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=93.33 E-value=0.068 Score=38.44 Aligned_cols=37 Identities=32% Similarity=0.658 Sum_probs=29.3
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+.|++.|+++.||.|+ .+|+.|+++|++|.+++-+
T Consensus 2 ~~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~ 38 (234)
T 2ehd_A 2 EGMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARD 38 (234)
T ss_dssp --CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 445678999999998885 5677888899999998765
No 394
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=93.31 E-value=0.093 Score=38.52 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=30.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
-..|++.|+++.||.|+ .+|+.|+++|.+|.++|-+.
T Consensus 6 l~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 42 (259)
T 4e6p_A 6 LEGKSALITGSARGIGR-----AFAEAYVREGATVAIADIDI 42 (259)
T ss_dssp TTTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 35688999999998886 47788889999999998653
No 395
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.28 E-value=0.062 Score=40.99 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
++++++++ |-.|+||||+...|+... .|+|+.++.-|..
T Consensus 3 ~i~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G 41 (318)
T 1nij_A 3 PIAVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEFG 41 (318)
T ss_dssp CEEEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSCC
T ss_pred cccEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecCc
Confidence 35666666 677899999998887653 6899999987744
No 396
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=93.28 E-value=0.047 Score=40.26 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+-..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+..
T Consensus 25 ~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp HTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 345689999999999885 577888899999999987644
No 397
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.27 E-value=0.1 Score=36.16 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=44.6
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc-----------CCceeeEEecc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT-----------NIKILGLIENM 183 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~-----------~~~~~g~v~N~ 183 (192)
..+.+.|+|+|+...... .... .-..+|.+++|.+.. ..++..+...+..+.+. +.+++ +|.||
T Consensus 61 ~~~~~~i~Dt~G~~~~~~--~~~~-~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~NK 136 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRG--LWET-YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL-FFANK 136 (199)
T ss_dssp TTEEEEEEEECCSGGGGG--GGGG-GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE-EEEEC
T ss_pred CCEEEEEEECCCCHhHHH--HHHH-HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE-EEEEC
Confidence 577899999997543221 1111 112599999998886 44677776666655432 66665 99999
Q ss_pred CccC
Q psy9977 184 SGYT 187 (192)
Q Consensus 184 ~~~~ 187 (192)
.|..
T Consensus 137 ~Dl~ 140 (199)
T 4bas_A 137 MDAA 140 (199)
T ss_dssp TTST
T ss_pred cCCC
Confidence 9864
No 398
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.21 E-value=0.12 Score=43.41 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=30.1
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEe
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILD 42 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD 42 (192)
++++-|-.|+|||++.+.+..++.++|.+||++-
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 5666688899999999999999999999999874
No 399
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=93.18 E-value=0.08 Score=38.99 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
|++-..|++.|+++.||.|+. +|+.|+++|.+|.+++-+.
T Consensus 5 m~~l~~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~ 44 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRG-----IATVFARAGANVAVAGRST 44 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred ccCCCCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 445567899999999988864 6788889999999998653
No 400
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.16 E-value=0.12 Score=38.67 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=28.2
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+-+.++ |..|+|||+++..+|..+ +.++..+++...
T Consensus 51 ~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~~ 86 (310)
T 1ofh_A 51 KNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (310)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence 345555 778899999999999887 668888887643
No 401
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.12 E-value=0.2 Score=33.89 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCcEEEEeCCCCCChhH--HHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHhc-----CCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDEH--ITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKKT-----NIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~--~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~-----~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+...... ...+. .+|.+++|.+.. ..+.+.+...++.+... +.+.+-+|.||.|.
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl 127 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIY-----GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHT-----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred EEEEEEEECCCCccccchhhHHHh-----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence 47889999997543221 11222 599999998876 44666666666666542 55545689999986
No 402
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.11 E-value=0.55 Score=35.62 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=26.2
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++-+.++ |..|+|||++|..+|..+ +.++..+++.
T Consensus 51 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~~ 85 (322)
T 3eie_A 51 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSSS 85 (322)
T ss_dssp CCEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEHH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEchH
Confidence 3456666 677899999999998764 6677777664
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.09 E-value=0.12 Score=37.12 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=21.3
Q ss_pred EEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 11 ~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
++.|-.|+||||++..|+..+ |..+ ++.
T Consensus 4 ~l~G~~GsGKsT~a~~La~~l---g~~~--i~~ 31 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKY---SLAH--IES 31 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHH---TCEE--EEH
T ss_pred EEECCCCCCHHHHHHHHHHHh---CCeE--Ech
Confidence 444778899999999999877 5544 555
No 404
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.04 E-value=0.094 Score=37.93 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=24.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.+|++ ++.-|+||||++..||..| |.++ +|.|.
T Consensus 15 ~iI~i-~g~~gsGk~~i~~~la~~l---g~~~--~d~~~ 47 (223)
T 3hdt_A 15 LIITI-EREYGSGGRIVGKKLAEEL---GIHF--YDDDI 47 (223)
T ss_dssp EEEEE-EECTTSCHHHHHHHHHHHH---TCEE--ECHHH
T ss_pred eEEEE-eCCCCCCHHHHHHHHHHHc---CCcE--EcHHH
Confidence 44544 5778899999999998776 5554 77664
No 405
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=93.04 E-value=0.049 Score=39.05 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|++-..|++.|+++.+|.|+ .+|+.|+++|.+|.+++-+..
T Consensus 1 M~~~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 41 (223)
T 3uce_A 1 MMGSDKTVYVVLGGTSGIGA-----ELAKQLESEHTIVHVASRQTG 41 (223)
T ss_dssp ----CCEEEEEETTTSHHHH-----HHHHHHCSTTEEEEEESGGGT
T ss_pred CCCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEecCCcc
Confidence 56667799999999999886 467788899999999986543
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.03 E-value=0.14 Score=40.52 Aligned_cols=32 Identities=38% Similarity=0.607 Sum_probs=24.0
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.+++|-.|+||||++..||..+. .-+|.+|.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 444556778999999999998874 24677774
No 407
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=93.02 E-value=0.13 Score=39.31 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=27.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI 40 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vll 40 (192)
..++|+|+ |..||||++.-++..|.+.|+++.+
T Consensus 107 ~~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 107 HHWVLGVA---GTHGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp GSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 45788888 5578999999999999999998753
No 408
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.01 E-value=0.083 Score=40.08 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.1
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+.++++..|+|||+++..+|..+ +.+++.+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 3456777889999999999998766 6677777643
No 409
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=92.99 E-value=0.1 Score=38.10 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=30.5
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+-..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+
T Consensus 6 ~l~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~ 42 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGK-----AIAELLAERGAKVIGTATS 42 (248)
T ss_dssp CCTTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 345689999999998885 5778888999999998765
No 410
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=92.97 E-value=0.074 Score=38.26 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=27.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
||++.|+++.||.|+ .+|+.|+++|.+|.+++-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999999998886 46778889999999998653
No 411
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=92.96 E-value=0.089 Score=39.59 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
++-..|++.|+++.||.|+ .+|+.|++.|.+|.+++-+.
T Consensus 37 ~~l~~k~vlVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 75 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGR-----GIATVFARAGANVAVAARSP 75 (293)
T ss_dssp TCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESSG
T ss_pred cCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 3445689999999999886 46788889999999998664
No 412
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.94 E-value=0.24 Score=38.27 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=42.2
Q ss_pred CCcEEEEeCCCCCChh------------HHHHHHHhhhhcCCeEEEecCCCc--ccHHHHHHHHHHhHhcCCceeeEEec
Q psy9977 117 DVDYLIIDTPPGTSDE------------HITVMECLREVQCDGAVLVTTPQA--VSIEDVRKEITFCKKTNIKILGLIEN 182 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~------------~~~~l~~~~~~~ad~viiv~~~~~--~~~~~~~~~~~~l~~~~~~~~g~v~N 182 (192)
..++.++|+|+..... ....... ...+|.+++++.+.. .......++++.+...+.+.+ +|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~--i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSY--IEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHH--HHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHH--hhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEe
Confidence 5679999999855420 1111111 226898888776532 233455666677766677766 8999
Q ss_pred cCccC
Q psy9977 183 MSGYT 187 (192)
Q Consensus 183 ~~~~~ 187 (192)
|.|..
T Consensus 212 K~Dl~ 216 (360)
T 3t34_A 212 KIDLM 216 (360)
T ss_dssp CGGGC
T ss_pred CCccC
Confidence 99864
No 413
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.94 E-value=0.16 Score=37.07 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=25.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
++-+.++ |..|+||||++..+|..+ +.++..+++.
T Consensus 45 ~~~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~~~ 79 (257)
T 1lv7_A 45 PKGVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTISGS 79 (257)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred CCeEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEeHH
Confidence 3446666 678899999999998875 4566666543
No 414
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=92.92 E-value=0.068 Score=39.42 Aligned_cols=38 Identities=26% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+-..|++.|+++.||.|+ .+|+.|++.|.+|.+++-+.
T Consensus 24 ~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 61 (260)
T 3gem_A 24 TLSSAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTE 61 (260)
T ss_dssp ---CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 334578999999998886 57788889999999998764
No 415
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.92 E-value=0.095 Score=36.75 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=19.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
+.+++++ |-.|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 4567777 667899999999988764
No 416
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.83 E-value=0.076 Score=38.72 Aligned_cols=33 Identities=45% Similarity=0.527 Sum_probs=23.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.+|++. +-.|+||||++..||..+ |. .++|.|.
T Consensus 10 ~~i~i~-G~~GsGKsTla~~la~~l---g~--~~~d~g~ 42 (233)
T 3r20_A 10 LVVAVD-GPAGTGKSSVSRGLARAL---GA--RYLDTGA 42 (233)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--CcccCCc
Confidence 355555 777899999999998877 33 4466653
No 417
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=92.82 E-value=0.13 Score=33.79 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
|....++.|.|++. |. +...+|+.|.++|++|.++|-|+.
T Consensus 1 m~~~~~~~v~I~G~----G~--iG~~la~~L~~~g~~V~~id~~~~ 40 (141)
T 3llv_A 1 MTENGRYEYIVIGS----EA--AGVGLVRELTAAGKKVLAVDKSKE 40 (141)
T ss_dssp -----CCSEEEECC----SH--HHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CCCCCCCEEEEECC----CH--HHHHHHHHHHHCCCeEEEEECCHH
Confidence 33344567888843 43 456788899999999999998743
No 418
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.80 E-value=0.35 Score=37.32 Aligned_cols=70 Identities=10% Similarity=0.044 Sum_probs=39.3
Q ss_pred CCcEEEEeCCCCCC--------h---hHHHHHHHhhhhcCCeEEEecCCCc-ccHHHHHHHHHHhHhcCCceeeEEeccC
Q psy9977 117 DVDYLIIDTPPGTS--------D---EHITVMECLREVQCDGAVLVTTPQA-VSIEDVRKEITFCKKTNIKILGLIENMS 184 (192)
Q Consensus 117 ~~D~IiiD~~~~~~--------~---~~~~~l~~~~~~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~~~~~~g~v~N~~ 184 (192)
.++++|+|+|+... + .....+..+.....+.+++++.+.. .......++++.+...+.+.+ +|+||.
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i-~V~NK~ 207 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTI-GVITKL 207 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEE-EEEECG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceE-EEeccc
Confidence 57899999998543 1 1112222222223445555555432 222233446666666677766 999999
Q ss_pred ccC
Q psy9977 185 GYT 187 (192)
Q Consensus 185 ~~~ 187 (192)
|..
T Consensus 208 Dl~ 210 (353)
T 2x2e_A 208 DLM 210 (353)
T ss_dssp GGS
T ss_pred ccc
Confidence 864
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.80 E-value=0.078 Score=39.05 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=24.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.|+++ |..|+||||++..||..+ |+. ++|.|
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~~--~~d~d 80 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GYT--FFDCD 80 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TCE--EEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CCc--EEeCc
Confidence 4567776 777899999999998876 443 57766
No 420
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.77 E-value=0.1 Score=36.67 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=23.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKG 35 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g 35 (192)
+++++ +..|+||||+...++..+...|
T Consensus 3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 56666 7788999999999999998777
No 421
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=92.77 E-value=0.11 Score=38.84 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|++-..|++.|+++.||.|+ .+|+.|++.|.+|.+++-+
T Consensus 23 m~~~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~ 61 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGR-----ATALALAADGVTVGALGRT 61 (283)
T ss_dssp ----CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred hcCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 34445689999999999885 4678888999999998865
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.77 E-value=0.079 Score=37.70 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=21.8
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
|+|. |..|+||||++..||..+ |..+ ++.
T Consensus 3 I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~ 31 (214)
T 1e4v_A 3 IILL-GAPVAGKGTQAQFIMEKY---GIPQ--IST 31 (214)
T ss_dssp EEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeH
Confidence 5555 667899999999999876 5555 555
No 423
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=92.75 E-value=0.15 Score=40.43 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=29.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
..++|+|++ -.||||++.-++..|...|++|.++
T Consensus 38 ~~~vI~VtG---TnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 38 QGRYIHVTG---TNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SSCEEEEEC---SSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCcEEEEEC---CCChHHHHHHHHHHHHHCCCCEEEE
Confidence 457888884 4679999999999999999999876
No 424
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=92.75 E-value=0.13 Score=37.78 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=30.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
..|++.|+++.+|.|+ .+|+.|+++|.+|.+++-+
T Consensus 7 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~ 41 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTGRN 41 (255)
T ss_dssp TTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 5689999999999886 5788889999999999865
No 425
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=92.73 E-value=0.15 Score=42.52 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=47.3
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCccc-------HHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVS-------IEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~-------~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
..+.++|+|+|+...... ..... ...+|.+++|++.+... .....+.+..+...+.+.+-+++||.|..
T Consensus 243 ~~~~~~iiDTPG~e~f~~-~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVP-NAIMG--ISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHH-HHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHH-HHHHH--HhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 467899999997654322 22222 23699999999987642 24556666667777877566899999864
No 426
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.73 E-value=0.18 Score=43.71 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=45.9
Q ss_pred CCCcEEEEeCCCCCChh--HHHHHHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDE--HITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~--~~~~l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+..+.. ....+. .+|.+++|++............+..+...+++++ +++||.|.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~-----~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-lviNK~D~ 162 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALR-----VTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDR 162 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHH-----TCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHH-----hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeE-EEEECCCc
Confidence 46789999999865432 222333 4999999999876544455566666666788876 99999885
No 427
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=92.70 E-value=0.11 Score=38.34 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|++-..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+
T Consensus 22 m~~l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~ 60 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGE-----AIARCFHAQGAIVGLHGTR 60 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred hhccCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 34445689999999999886 4778889999999998764
No 428
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=92.70 E-value=0.13 Score=38.30 Aligned_cols=35 Identities=31% Similarity=0.585 Sum_probs=29.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
-..|++.|+++.||.|+ .+|+.|+++|.+|.+++.
T Consensus 27 ~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~ 61 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGL-----GIARALAASGFDIAITGI 61 (280)
T ss_dssp CCCCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEecCCCHHHH-----HHHHHHHHCCCeEEEEeC
Confidence 35678999999998886 467888899999999985
No 429
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.69 E-value=0.048 Score=38.59 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=18.9
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
++|++. |-.|+||||++..|+..+
T Consensus 13 ~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 445554 778899999999998876
No 430
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=92.68 E-value=0.13 Score=37.34 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+
T Consensus 10 ~~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~ 44 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGL-----EICRAFAASGARLILIDRE 44 (254)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 4578999999998886 5678888999999998765
No 431
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=92.65 E-value=0.17 Score=38.49 Aligned_cols=37 Identities=35% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
-..|++.|+++.||.|+ .+|+.|+++|++|.+++-+.
T Consensus 6 l~~k~vlVTGas~gIG~-----~la~~l~~~G~~Vv~~~r~~ 42 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGI-----GLVRQLLNQGCKVAIADIRQ 42 (319)
T ss_dssp CTTCEEEEETTTSTHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEcCCchHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 35679999999999886 47788889999999988763
No 432
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.65 E-value=0.12 Score=35.95 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeE
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~v 38 (192)
+-++|. +.+|+||||+|..|.. +|++.
T Consensus 17 ~gvli~-G~SGaGKStlal~L~~----rG~~l 43 (181)
T 3tqf_A 17 MGVLIT-GEANIGKSELSLALID----RGHQL 43 (181)
T ss_dssp EEEEEE-ESSSSSHHHHHHHHHH----TTCEE
T ss_pred EEEEEE-cCCCCCHHHHHHHHHH----cCCeE
Confidence 344555 7888999999977764 68764
No 433
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.63 E-value=0.1 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=21.7
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|++ .|-.|+||||++..||..+ |..+ +|.|
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~~~---~~~~--i~~d 32 (216)
T 3fb4_A 3 IVL-MGLPGAGKGTQAEQIIEKY---EIPH--ISTG 32 (216)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh---CCcE--eeHH
Confidence 444 4778899999999998776 5444 5553
No 434
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=92.63 E-value=0.11 Score=37.75 Aligned_cols=35 Identities=37% Similarity=0.605 Sum_probs=29.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.|++.|+++.||.|+ .+|+.|+++|.+|.++|-+.
T Consensus 2 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 2 NRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 578999999999886 46788889999999988653
No 435
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=92.61 E-value=0.12 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.562 Sum_probs=29.3
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+|++.|+++.||.|+ .+|+.|+++|.+|.+++-+
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 578999999999986 5778888999999998865
No 436
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=92.58 E-value=0.17 Score=38.40 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=32.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~~~ 48 (192)
..|++.|+++.||.|+ .+|+.|+++|.+|.++|.+...+
T Consensus 45 ~gk~~lVTGas~GIG~-----aia~~la~~G~~Vv~~~~~~~~~ 83 (317)
T 3oec_A 45 QGKVAFITGAARGQGR-----THAVRLAQDGADIVAIDLCRQQP 83 (317)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEECCCCCT
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCeEEEEecccccc
Confidence 4589999999999886 46788889999999999875543
No 437
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=92.54 E-value=0.13 Score=38.19 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=32.4
Q ss_pred CCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 2 ~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.+-..|++.|+++.||.|+ .+|+.|+++|.+|.++|-+..
T Consensus 6 ~~l~~k~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~~ 45 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGR-----SHAVALAEAGADIAICDRCEN 45 (281)
T ss_dssp CTTTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred cccCCCEEEEeCCCchHHH-----HHHHHHHHCCCeEEEEeCCcc
Confidence 3445689999999998885 567888899999999988754
No 438
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.54 E-value=0.12 Score=35.82 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+++++ |..|+||||++..|+.. .+. ...+|.|
T Consensus 3 ~ii~l~-G~~GaGKSTl~~~L~~~---~~g-~~~i~~d 35 (189)
T 2bdt_A 3 KLYIIT-GPAGVGKSTTCKRLAAQ---LDN-SAYIEGD 35 (189)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHH---SSS-EEEEEHH
T ss_pred eEEEEE-CCCCCcHHHHHHHHhcc---cCC-eEEEccc
Confidence 445555 77899999999999752 222 2456655
No 439
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=92.53 E-value=0.11 Score=38.69 Aligned_cols=37 Identities=14% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+-+.|++.|+++.||.|+ .+|+.|++.|.+|.+++-+
T Consensus 22 ~l~~k~~lVTGas~GIG~-----~ia~~la~~G~~V~~~~r~ 58 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGL-----AIARTLAKAGANIVLNGFG 58 (281)
T ss_dssp CCTTCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEECCC
T ss_pred ccCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 335689999999999886 5778888999999998763
No 440
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.48 E-value=0.22 Score=36.74 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEee
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~ 43 (192)
.+-+.++ |..|+|||++|..+|..+ +.++..+++
T Consensus 64 ~~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 64 LVSVLLE-GPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 3445555 778999999999998873 667666654
No 441
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.42 E-value=0.16 Score=42.31 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=27.2
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHh----CCCeEEEE
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKD----KGFKVGIL 41 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~----~g~~vlli 41 (192)
.+.++.+..|+||||++..+...+.+ .|.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 35666688999999999999988874 46688775
No 442
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=92.42 E-value=0.2 Score=40.60 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=29.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
..++|+|+ |-.||||++.-++..|.+.|++|.++
T Consensus 107 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 140 (498)
T 1e8c_A 107 NLRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVM 140 (498)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEE
Confidence 45788887 55789999999999999999998765
No 443
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=92.41 E-value=0.14 Score=37.38 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=29.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
||++.|+++.||.|+. +|+.|+++|.+|.+++-+..
T Consensus 1 mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~~ 36 (257)
T 1fjh_A 1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCch
Confidence 4789999999988865 67788889999999987643
No 444
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.41 E-value=0.24 Score=34.15 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh------cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK------TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~------~~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+........ -.. ...+|.+++|.+.. ..+...+...+..+.+ .+.+++ +|+||.|..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~-~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 139 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLW-EHY--YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL-FFANKMDLR 139 (190)
T ss_dssp SCEEEEEEECCSTTTGGGG-GGG--GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE-EEEECTTST
T ss_pred CEEEEEEECCCCHHHHHHH-HHH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE-EEEeCcCcc
Confidence 5789999999754332211 011 12589999998876 4456776666555543 356655 999999863
No 445
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=92.40 E-value=0.13 Score=38.13 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+...|++.|+++.||.|+ .+|+.|++.|.+|.+++.+..
T Consensus 11 ~~~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 11 EFTDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEK 49 (269)
T ss_dssp TTTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC-
T ss_pred CCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 346789999999999886 577888999999999987754
No 446
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=92.35 E-value=0.09 Score=38.89 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=30.9
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
-..|++.|+++.||.|+ .+|+.|+++|.+|.++|-+..
T Consensus 26 l~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~~ 63 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGG-----AVVTALRAAGARVAVADRAVA 63 (266)
T ss_dssp CTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECSSCCT
T ss_pred CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 35689999999999886 577888899999999876543
No 447
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=92.35 E-value=0.13 Score=38.06 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=29.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.|++.|+++.||.|+ .+|+.|+++|.+|.+++-+
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~ 49 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARR 49 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 4578999999999986 5778889999999998865
No 448
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.35 E-value=0.072 Score=40.36 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=30.4
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
+.++ |..|+|||++|..++....+.+.+...++|...
T Consensus 28 vLi~-Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 28 VLIH-GDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp EEEE-SCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred EEEE-CCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 4444 888999999999999887778888988988744
No 449
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=92.34 E-value=0.16 Score=37.71 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=29.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..|++.|+++.||.|+. +|+.|+++|.+|.+++-+.
T Consensus 21 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 56 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLE-----IARRLGKEGLRVFVCARGE 56 (277)
T ss_dssp TSCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 45789999999999974 6788889999999987653
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.33 E-value=0.22 Score=34.33 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=41.5
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh------cCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK------TNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~------~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+............ .+|.+++|.+.+ ..+.+.+...++.+.. .+.+++ +|.||.|.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~----~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl 139 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNCERYLN----WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL-LLGNKLDM 139 (187)
T ss_dssp EEEEEEEEECCC---CCCTHHHHT----TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECGGG
T ss_pred EEEEEEEEECCCCCcchhHHHHHh----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEE-EEEECcch
Confidence 356788999987532221111112 489888888775 5567777766666654 366655 99999986
No 451
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.32 E-value=0.11 Score=36.91 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
.+.+++|-.|+||||+...|+..+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 344556888899999999887654
No 452
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=92.31 E-value=0.15 Score=37.85 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
-..|++.|+++.+|.|+ .+|+.|+++|.+|.++|-+.
T Consensus 28 l~~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGE-----ATVRRLHADGLGVVIADLAA 64 (281)
T ss_dssp GTTEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 35689999999999886 47788889999999998653
No 453
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.31 E-value=0.089 Score=38.19 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=20.5
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
++.|+|. |-.|+||||++..|+..|.
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 3556666 6688999999999998874
No 454
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=92.31 E-value=0.096 Score=38.84 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=30.0
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..+|++.|+++.||.|+ ++|+.|+++|.+|.+++-+.
T Consensus 3 ~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 39 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGR-----AIAEAAVAAGDTVIGTARRT 39 (281)
T ss_dssp -CCCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESSG
T ss_pred CCCcEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999886 57788889999999987653
No 455
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=92.31 E-value=0.15 Score=36.29 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHH-hCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLK-DKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la-~~g~~vlliD~d~ 45 (192)
.+||+|+|+++.||.|+ .+++.|+ +.|++|.+++-+.
T Consensus 3 ~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEESSH
T ss_pred ceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEecCc
Confidence 45678999999999986 4666777 7999999987663
No 456
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=92.29 E-value=0.18 Score=39.81 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=43.4
Q ss_pred CcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCccc-HHHHHHHHHHhHhcCCceeeEEeccCccC
Q psy9977 118 VDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVS-IEDVRKEITFCKKTNIKILGLIENMSGYT 187 (192)
Q Consensus 118 ~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~-~~~~~~~~~~l~~~~~~~~g~v~N~~~~~ 187 (192)
+.+.++|+|+-. .. ...+... ...+|.+++|++.+... ...+.+.+..++..+.+.+-+++||.|..
T Consensus 81 ~~i~iiDtPGh~-~f-~~~~~~~-~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHE-TL-MATMLSG-ASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHH-HH-HHHHHTT-CSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHH-HH-HHHHHHh-HhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 678999999732 22 1222211 22579999999987543 45555666666666765555999999964
No 457
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=92.27 E-value=0.21 Score=40.89 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=29.0
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
..++|+|+ |-.||||++.-++..|.+.|++|.++
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~ 178 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLI 178 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 45788888 45789999999999999999998764
No 458
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.2 Score=38.25 Aligned_cols=40 Identities=10% Similarity=0.003 Sum_probs=29.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhC-------CCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDK-------GFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~-------g~~vlliD~d~ 45 (192)
.++.+ +++|..|+|||+++..++..|.+. +.+++.|+|-.
T Consensus 44 ~~~~l-li~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 44 QNKLF-YITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp CCCEE-EEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CCCeE-EEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 33445 555889999999999999999753 34566666543
No 459
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.25 E-value=0.2 Score=37.11 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=25.7
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+-+.++ |..|+|||+++..+|..+ +.++..+++.
T Consensus 51 ~~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 51 PKGILLY-GPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp CSEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 3445555 778899999999887654 6677777664
No 460
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=92.23 E-value=0.1 Score=38.80 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.0
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
-..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+
T Consensus 26 ~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~ 61 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGR-----AVAVALAGAGYGVALAGRR 61 (272)
T ss_dssp --CCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 35678999999998886 4678888999999998865
No 461
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.21 E-value=0.44 Score=35.41 Aligned_cols=67 Identities=22% Similarity=0.130 Sum_probs=41.9
Q ss_pred CCcEEEEeCCCCCChh----HHHH-HHHhhhhcCCeEEEecCCCcccHHHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 117 DVDYLIIDTPPGTSDE----HITV-MECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~----~~~~-l~~~~~~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
.+.+.++|+|+..... .... -..+....+|.+++|++... .+....+...+...+.+++ +++||.|.
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~i-lv~NK~Dl 119 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPVT-IALNMIDV 119 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEE-EEEECHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEE-EEEEChhh
Confidence 4578999999854321 0011 11121225899999988754 4455556666666788766 99999874
No 462
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=92.20 E-value=0.12 Score=37.77 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=30.6
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+-..|++.|+++.||.|+ .+|+.|++.|.+|.+++-+.
T Consensus 4 ~~~~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGA-----VIAAGLATDGYRVVLIARSK 41 (250)
T ss_dssp -CCCCEEEEESTTSHHHH-----HHHHHHHHHTCEEEEEESCH
T ss_pred cCCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 345689999999999986 57778888899999997653
No 463
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=92.17 E-value=0.27 Score=39.20 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
+...++|.|+| -.||||++.-++..|.+.|++|.++
T Consensus 49 ~~~~~vI~VtG---TNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 49 KPAPKIFTVAG---TNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp CSSSEEEEEEC---SSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccCCEEEEEC---CcChHHHHHHHHHHHHHCCCcEEEE
Confidence 34567888884 4679999999999999999999775
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.17 E-value=0.14 Score=36.97 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=25.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
.+.+|+++ +..|+||||++..||..| |. .++|.|.
T Consensus 15 ~~~~i~i~-G~~gsGKst~~~~l~~~l---g~--~~~d~d~ 49 (236)
T 1q3t_A 15 KTIQIAID-GPASSGKSTVAKIIAKDF---GF--TYLDTGA 49 (236)
T ss_dssp CCCEEEEE-CSSCSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc---CC--ceecCCC
Confidence 44567766 677899999998888765 44 4577763
No 465
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=92.17 E-value=0.15 Score=36.89 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=29.8
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
.|++.|+++.||.|+ .+|+.|+++|.+|.+++-+..
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~~ 37 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNPE 37 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCH
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 478999999999886 467888899999999987643
No 466
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.17 E-value=0.14 Score=41.69 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=27.0
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.+.+ .|..|+||||+|..+|..+ |.+++.+++..
T Consensus 78 ~~lLL-~GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 78 RAAML-YGPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp SEEEE-ECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 44555 4778899999999998877 78887777643
No 467
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.15 E-value=0.11 Score=37.58 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=25.8
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+.+..|+|. |..|+||||++..|+.. +.+|.+..-+
T Consensus 18 ~~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 345677777 77789999998877765 5567666543
No 468
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=92.14 E-value=0.17 Score=36.86 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=30.3
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
-..|++.|+++.||.|+ .+|+.|+++|.+|.++|-+
T Consensus 7 ~~~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~ 42 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADIN 42 (253)
T ss_dssp TTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred cCCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCC
Confidence 35689999999998885 6788889999999998765
No 469
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.13 E-value=0.22 Score=35.41 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=21.4
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.+.|+|+ +..|+||||+|..|+ ++|.+ +|..|
T Consensus 34 g~~ilI~-GpsGsGKStLA~~La----~~g~~--iIsdD 65 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALELV----QRGHR--LIADD 65 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHHH----TTTCE--EEESS
T ss_pred CEEEEEE-CCCCCCHHHHHHHHH----HhCCe--EEecc
Confidence 4556655 777899999997776 45653 34444
No 470
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=92.13 E-value=0.2 Score=37.08 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=30.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..|++.|+++.||.|+ .+|+.|+++|.+|.++|-+.
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (271)
T 3tzq_B 10 ENKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPE 45 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTT
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999886 57788889999999998764
No 471
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=92.12 E-value=0.16 Score=37.88 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=30.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
..|++.|+++.+|.|+. +|+.|++.|.+|.+.|-+
T Consensus 28 ~gKvalVTGas~GIG~a-----iA~~la~~Ga~V~i~~r~ 62 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLA-----AAKRFVAEGARVFITGRR 62 (273)
T ss_dssp TTCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeCcCCHHHHH-----HHHHHHHCCCEEEEEECC
Confidence 45899999999999965 688899999999999865
No 472
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.11 E-value=0.1 Score=36.76 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=20.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
.+.++++ |..|+||||+...|+..+.
T Consensus 4 g~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 4566666 7778999999999988764
No 473
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=92.10 E-value=0.16 Score=36.99 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=30.1
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
-..|++.|+++.+|.|+ .+|+.|+++|.+|.++|-+
T Consensus 4 l~gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~ 39 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGK-----AIAARLAADGATVIVSDIN 39 (247)
T ss_dssp TTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred cCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 35689999999999886 5778888999999998765
No 474
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.10 E-value=0.55 Score=34.92 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=39.1
Q ss_pred CCcEEEEeCCCCCC-------h----hHHHHHHHhhhhcCCeEE-EecCCCc-ccHHHHHHHHHHhHhcCCceeeEEecc
Q psy9977 117 DVDYLIIDTPPGTS-------D----EHITVMECLREVQCDGAV-LVTTPQA-VSIEDVRKEITFCKKTNIKILGLIENM 183 (192)
Q Consensus 117 ~~D~IiiD~~~~~~-------~----~~~~~l~~~~~~~ad~vi-iv~~~~~-~~~~~~~~~~~~l~~~~~~~~g~v~N~ 183 (192)
.+++.|+|+|+... . .....+.... ..++.++ +|++... .+......+++.+...+.+.+ +|+||
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i-~V~NK 201 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTI-GVITK 201 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHH-TSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEE-EEEEC
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHH-cCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEE-EEEEc
Confidence 47999999998542 1 1111221111 1356555 4655542 233333456666666677765 99999
Q ss_pred CccC
Q psy9977 184 SGYT 187 (192)
Q Consensus 184 ~~~~ 187 (192)
.|..
T Consensus 202 ~Dl~ 205 (299)
T 2aka_B 202 LDLM 205 (299)
T ss_dssp GGGS
T ss_pred cccC
Confidence 9863
No 475
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=92.08 E-value=0.11 Score=37.90 Aligned_cols=35 Identities=26% Similarity=0.199 Sum_probs=29.1
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
||++.|+++.||.|+. +|+.|+++|.+|.+++-+.
T Consensus 1 Mk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 35 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMG-----SALRLSEAGHTVACHDESF 35 (254)
T ss_dssp -CEEEESSTTSTTHHH-----HHHHHHHTTCEEEECCGGG
T ss_pred CeEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 4789999999999974 7788889999999987664
No 476
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=92.06 E-value=0.16 Score=36.52 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=28.6
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
+|++.|+++.||.|+ .+|+.|+++|.+|.+++-+
T Consensus 2 ~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGASRGIGE-----AIARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 688999999988885 5778888999999998765
No 477
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=92.06 E-value=0.17 Score=37.01 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.8
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
-..|++.|+++.+|.|+ .+|+.|+++|.+|.+++-+.
T Consensus 5 ~~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNG 41 (252)
T ss_dssp CCSCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSG
T ss_pred CCCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999885 57788889999999998764
No 478
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=92.03 E-value=0.13 Score=41.47 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCCcccH-------HHHHHHHHHhHhcCCceeeEEeccCcc
Q psy9977 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSI-------EDVRKEITFCKKTNIKILGLIENMSGY 186 (192)
Q Consensus 116 ~~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~g~v~N~~~~ 186 (192)
..+.+.|+|+|+..... ......+ ..+|.+++|++...... ..+.+.+..+...+++.+-+++||.|.
T Consensus 119 ~~~~~~iiDtPGh~~f~-~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYV-TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SSEEEEECCCCC------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CCeEEEEEECCCcHHHH-HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 45678999999754322 1222221 36999999999875432 245555666667788744599999996
No 479
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=92.02 E-value=0.23 Score=36.72 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCC--CCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 4 GVKHVILVLSGK--GGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~--gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
-..|++.|+++. ||.|+ .+|+.|+++|.+|.+++-+.
T Consensus 4 l~~k~vlVTGas~~~gIG~-----~~a~~l~~~G~~V~~~~r~~ 42 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAY-----GIAQSCFNQGATLAFTYLNE 42 (275)
T ss_dssp TTTCEEEEECCCSTTSHHH-----HHHHHHHTTTCEEEEEESST
T ss_pred CCCCEEEEECCCCCCcHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 345789999988 88886 57788889999999998764
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.02 E-value=0.15 Score=36.64 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=22.0
Q ss_pred cEEEEEEeCCCCccHhHHHHHHHHHHHh
Q psy9977 6 KHVILVLSGKGGVGKSTVSTQLALGLKD 33 (192)
Q Consensus 6 ~~~i~~~s~~gg~GkTt~a~~lA~~la~ 33 (192)
++.|+|- |-.|+||||.+..|+..|..
T Consensus 5 g~~i~~e-G~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIE-GLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEE-ECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhcc
Confidence 4556665 66789999999999999876
No 481
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=92.01 E-value=0.21 Score=36.40 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=30.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..|++.|+++.||.|+. +|+.|+++|.+|.+++-+.
T Consensus 6 ~~k~vlVTGas~giG~~-----ia~~l~~~G~~V~~~~r~~ 41 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYA-----TALAFVEAGAKVTGFDQAF 41 (250)
T ss_dssp TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCch
Confidence 45789999999999974 6788889999999998764
No 482
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=92.01 E-value=0.19 Score=37.46 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=30.8
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+-..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+.
T Consensus 13 ~l~gk~vlVTGas~gIG~-----~~a~~L~~~G~~V~~~~r~~ 50 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGA-----VTARELARRGATVIMAVRDT 50 (291)
T ss_dssp CCTTCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 335689999999998885 56788889999999998663
No 483
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.01 E-value=0.14 Score=35.51 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=19.8
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHH
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLK 32 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la 32 (192)
.++++ |..|+||||+...++..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 45665 7788999999999998884
No 484
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.00 E-value=0.19 Score=38.16 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=26.3
Q ss_pred EEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 9 i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+.++.|..|+|||+++..++..+. .+++++++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 455558889999999999987753 4578888864
No 485
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.00 E-value=0.077 Score=37.64 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=23.0
Q ss_pred EEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 8 ~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
.|..+++.-|+||||++..||..| |++. +|.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l---g~~~--~D~~ 38 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY---NIPL--YSKE 38 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT---TCCE--ECHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh---CcCE--ECHH
Confidence 344555777899999998888766 5664 5644
No 486
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=92.00 E-value=0.13 Score=38.00 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 1 ~~~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
|.+-..|++.|+++.||.|+. +|+.|+++|.+|.+++-+
T Consensus 1 m~~~~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 39 (278)
T 1spx_A 1 MTRFAEKVAIITGSSNGIGRA-----TAVLFAREGAKVTITGRH 39 (278)
T ss_dssp -CTTTTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCCCCCCEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 334456889999999999874 677888899999998765
No 487
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.081 Score=42.57 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=30.8
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHh-CCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKD-KGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~-~g~~vlliD~d~~ 46 (192)
...+++++ |..|+||||+...|+-.+.. .|++++++|.|+.
T Consensus 137 ~Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~ 178 (460)
T 2npi_A 137 EGPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ 178 (460)
T ss_dssp SCCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc
Confidence 45678888 66679999999999988775 4525466787764
No 488
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=91.97 E-value=0.15 Score=37.50 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCCcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 3 ~~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
+-..|++.|+++.||.|+. +|+.|+++|.+|.+++-+.
T Consensus 26 ~l~~k~vlITGas~gIG~~-----la~~l~~~G~~V~~~~r~~ 63 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAA-----IARKLGSLGARVVLTARDV 63 (262)
T ss_dssp TTTTCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEECCCChHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 3345889999999888854 6788889999999987653
No 489
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.96 E-value=0.17 Score=34.59 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCChhHHHHHHHhhhhcCCeEEEecCCC-cccHHHHHHHHHHhHh----cCCceeeEEeccCccC
Q psy9977 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQ-AVSIEDVRKEITFCKK----TNIKILGLIENMSGYT 187 (192)
Q Consensus 117 ~~D~IiiD~~~~~~~~~~~~l~~~~~~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~g~v~N~~~~~ 187 (192)
.+.+.|+|+|+...... .... ....+|.+++|.+.. ..++..+...+..+.+ .+.+++ +|.||.|..
T Consensus 64 ~~~~~i~Dt~G~~~~~~--~~~~-~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~ 135 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRS--SWNT-YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL-IFANKQDVK 135 (181)
T ss_dssp TEEEEEEEESSSGGGTC--GGGG-GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTST
T ss_pred CEEEEEEECCCCHhHHH--HHHH-HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEE-EEEECCCcc
Confidence 57889999997532211 1111 112589999988876 4467777766665543 455554 999999863
No 490
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.89 E-value=0.16 Score=34.60 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=21.4
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
...++++. +..|+||||+...++..+
T Consensus 32 ~Ge~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 45677777 667899999999999887
No 491
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.88 E-value=0.13 Score=42.33 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=27.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHH--hCC--CeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLK--DKG--FKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la--~~g--~~vlliD~d~~ 46 (192)
..++++ +.|-||+||||+|..++.... ... ..|..++++..
T Consensus 146 ~~~~v~-I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVT-IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEE-EECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEE-EEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 345555 458999999999999876542 222 25777777643
No 492
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.87 E-value=0.17 Score=38.45 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHH
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGL 31 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~l 31 (192)
...+++++ |..|+||||+...|+..+
T Consensus 125 ~Ge~vaIv-GpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFI-GPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEE-CSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHhhhc
Confidence 45678888 666899999999999988
No 493
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=91.86 E-value=0.13 Score=38.52 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=29.5
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+.
T Consensus 11 ~~k~vlITGas~GIG~-----~~a~~L~~~G~~V~~~~r~~ 46 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGF-----EICKQLSSNGIMVVLTCRDV 46 (311)
T ss_dssp -CCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578999999999886 56788889999999998663
No 494
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=91.85 E-value=0.16 Score=36.75 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=30.1
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+.
T Consensus 4 ~~k~vlITGas~gIG~-----~~a~~l~~~G~~v~~~~r~~ 39 (247)
T 3lyl_A 4 NEKVALVTGASRGIGF-----EVAHALASKGATVVGTATSQ 39 (247)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4688999999999886 57788889999999988653
No 495
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=91.82 E-value=0.19 Score=36.38 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=30.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+..
T Consensus 6 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 6 EARRVLVYGGRGALGS-----RCVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHTTTCEEEEEESSCC
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHhCCCEEEEEeCChh
Confidence 4678999999998886 467888899999999987644
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.79 E-value=0.23 Score=38.41 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=27.3
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d 44 (192)
..+-+.++ |..|+|||++|..+|..+ +.++..+++.
T Consensus 116 ~~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~~ 151 (357)
T 3d8b_A 116 PPKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISAS 151 (357)
T ss_dssp CCSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence 34556666 778899999999998654 7788888775
No 497
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=91.79 E-value=0.2 Score=36.71 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=29.6
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCC
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL 45 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~ 45 (192)
..|++.|+++.||.|+ .+|+.|+++|.+|.+++-+.
T Consensus 11 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 46 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGA-----AIARALDKAGATVAIADLDV 46 (263)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3478999999999886 46778889999999988653
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.77 E-value=0.18 Score=39.20 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=27.4
Q ss_pred EEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEEeeCCC
Q psy9977 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46 (192)
Q Consensus 7 ~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlliD~d~~ 46 (192)
..+.++ |..|+|||++|..+|..+ |.++..+++...
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~~ 108 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATSL 108 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGGC
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchhh
Confidence 345555 667899999999999876 678888877643
No 499
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=91.77 E-value=0.22 Score=39.81 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.2
Q ss_pred CcEEEEEEeCCCCccHhHHHHHHHHHHHhCCCeEEEE
Q psy9977 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41 (192)
Q Consensus 5 ~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g~~vlli 41 (192)
..++|+|++ --||||++.-++..|...|++|.++
T Consensus 51 ~~~vI~VTG---TnGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIGG---TNGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SSEEEEEEC---SSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEEC---CcCHHHHHHHHHHHHHHCCCCEEEE
Confidence 457888884 4689999999999999999999875
No 500
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=91.75 E-value=0.21 Score=31.37 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=27.7
Q ss_pred CCcEEEEEEeCCCCccHhHHHHHHHHHHHhCC-CeEEEEeeCC
Q psy9977 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKG-FKVGILDIDL 45 (192)
Q Consensus 4 ~~~~~i~~~s~~gg~GkTt~a~~lA~~la~~g-~~vlliD~d~ 45 (192)
.+++.|+|+++ |+.|.. ++..|.+.| ++|.++|-+.
T Consensus 3 ~~~~~v~I~G~-G~iG~~-----~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 3 AMRWNICVVGA-GKIGQM-----IAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TTCEEEEEECC-SHHHHH-----HHHHHHHCSSEEEEEEESCH
T ss_pred CCcCeEEEECC-CHHHHH-----HHHHHHhCCCceEEEEeCCH
Confidence 45678999988 888854 566777889 8999988764
Done!