RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9977
(192 letters)
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 282 bits (725), Expect = 1e-97
Identities = 85/190 (44%), Positives = 118/190 (62%), Gaps = 4/190 (2%)
Query: 2 LDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDV 61
L +K I V+SGKGGVGKSTV+ LA+ +G KVGILD D GPS+P L + N+ +
Sbjct: 14 LGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARI 73
Query: 62 HQCPEGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYL 121
EG PV T + VMS+ FLL + +IWRGP MIR+ + V W ++D+L
Sbjct: 74 AVSAEGLEPVLTQKYG-IKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHL 132
Query: 122 IIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIE 181
+ID PPGT D +TVM+ + + G V+V+TPQ ++ V K I ++TN +LGL+E
Sbjct: 133 LIDLPPGTGDAPLTVMQ---DAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVE 189
Query: 182 NMSGYTCPHC 191
NMS + CP+C
Sbjct: 190 NMSYFVCPNC 199
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 92.1 bits (229), Expect = 3e-23
Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 36/199 (18%)
Query: 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGWVP 70
++GKGGVGK+TV+ L + K+ +D D + L + + + P
Sbjct: 4 AVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP-DSCLGQTLGLSIEEAY----AITP 58
Query: 71 V---YTDASQTLAVMSIGFLLKNRDDAIIWRG-----------------------PKKTA 104
+ + + + L D + G ++ +
Sbjct: 59 LIEMKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENS 118
Query: 105 MIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRK 164
+ +++ + + +++D G + D + V P SI+
Sbjct: 119 FLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAK-----AVDMMIAVIEPNLNSIKTGLN 173
Query: 165 EITFCKKTNIKILGLIENM 183
IK + + N
Sbjct: 174 IEKLAGDLGIKKVRYVINK 192
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 86.9 bits (215), Expect = 1e-20
Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 19/187 (10%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN----SDV-H 62
V++ S GGVG STV+ A+ + G KV L+I+ CG + E SDV +
Sbjct: 145 VVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCG-TTDVFFQAEGNATMSDVIY 203
Query: 63 QCPEGWVPVYTDASQTLAVMSIGFLL----KNRDDAIIWRGPKKTAMIRQIINDVCWKDV 118
+ + G K D + +I I +
Sbjct: 204 SLKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNY 260
Query: 119 DYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEI-TFCKKTNIKIL 177
D +I+D P E + ++ ++V +S + + +
Sbjct: 261 DEIIVDLPFSLEIEKLKLLSK-----AWRIIVVNDGSQLSNYKFMRAYESVVLLEQNDDI 315
Query: 178 GLIENMS 184
+I NM+
Sbjct: 316 NIIRNMN 322
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 84.6 bits (210), Expect = 2e-20
Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 48/196 (24%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEG 67
I V SGKGG GK+T++ L + L G V I+D D+ ++ +L +E
Sbjct: 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEG--------- 54
Query: 68 WVPVYTDASQTLAVMSIGFLLKNR---DDAIIWRGPK-----------------KTAMIR 107
T + +L D+AI GP +
Sbjct: 55 --LPVT----------LQNVLAGEARIDEAIY-VGPGGVKVVPAGVSLEGLRKANPEKLE 101
Query: 108 QIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEIT 167
++ + + D L++D P G + + +LV P+ SI D K
Sbjct: 102 DVLTQIM-ESTDILLLDAPAGLERSAVIAIAA-----AQELLLVVNPEISSITDGLKTKI 155
Query: 168 FCKKTNIKILGLIENM 183
++ K+LG++ N
Sbjct: 156 VAERLGTKVLGVVVNR 171
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 79.2 bits (196), Expect = 2e-18
Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 47/197 (23%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEG 67
+I+V SGKGGVGK+T S +A GL KG K ++D + ++ ++ E
Sbjct: 4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERR-------- 55
Query: 68 WVPVYTDASQTLAVMSIGFLLKNR---DDAIIWRGPK--------------KTAM----I 106
VY +++ + A+I + + K A+ +
Sbjct: 56 --VVYD----------FVNVIQGDATLNQALI-KDKRTENLYILPASQTRDKDALTREGV 102
Query: 107 RQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEI 166
++++D+ D ++++ D+P G + + D A++ T P+ S+ D + +
Sbjct: 103 AKVLDDLKAMDFEFIVCDSPAGIETGALMALYF-----ADEAIITTNPEVSSVRDSDRIL 157
Query: 167 TFCKKTNIKILGLIENM 183
+ + E +
Sbjct: 158 GILASKSRRAENGEEPI 174
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 76.5 bits (189), Expect = 2e-17
Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 42/197 (21%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGL-KDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPE 66
V +S KGG G S ++ A L ++ V +DI L + L+
Sbjct: 6 VFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGN--------- 56
Query: 67 GWVPVYT--DASQTLAVMSIGFLLKNRDDAIIWR-----------GPKKTAMI-----RQ 108
D S + L D + +K I
Sbjct: 57 --THSQDLADISNASDRLDKSLL----DTMVQHISPSLDLIPSPATFEKIVNIEPERVSD 110
Query: 109 IINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITF 168
+I+ DY+I+D + V+E D +VTTP S+ + +
Sbjct: 111 LIHIAA-SFYDYIIVDFGASIDHVGVWVLE-----HLDELCIVTTPSLQSLRRAGQLLKL 164
Query: 169 CKKTNIKI--LGLIENM 183
CK+ I + +I N
Sbjct: 165 CKEFEKPISRIEIILNR 181
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 69.5 bits (171), Expect = 6e-15
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 29/187 (15%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPH-----LLNIENS--D 60
+I ++SGKGG GK+TV+ L++ L D+G KV +D D + +L +++
Sbjct: 4 IISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD-----LTMANLSLVLGVDDPDVT 58
Query: 61 VHQCPEGWVP----VYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWK 116
+H G +Y + V+ + + + P+K + ++I +
Sbjct: 59 LHDVLAGEANVEDAIYMTQFDNVYVLPGA---VDWEHVLKAD-PRK---LPEVIKSLK-D 110
Query: 117 DVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKI 176
D+++ID P G + + + + A+LVT P+ + D K KK + I
Sbjct: 111 KFDFILIDCPAGL--QLDAMSAM---LSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAI 165
Query: 177 LGLIENM 183
LG + N
Sbjct: 166 LGFVLNR 172
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 63.2 bits (154), Expect = 8e-13
Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 46/177 (25%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEG 67
VI L+ KGG GK+T +A L G+ + ++D D P+
Sbjct: 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD--------------------PQM 42
Query: 68 WVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPP 127
+ F D K IR+ + D D+ I+D
Sbjct: 43 S------LTNWSKAGKAAF------DVFTAASEKDVYGIRKDL-----ADYDFAIVDGAG 85
Query: 128 GTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKT----NIKILGLI 180
S + D ++ TP + +T + ++ LI
Sbjct: 86 SLSVITSAAVMV-----SDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLI 137
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 63.1 bits (154), Expect = 2e-12
Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 36/198 (18%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN-- 58
M+ +V+++ +G + V LA + +V ++D D+ LL N
Sbjct: 87 MMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN 146
Query: 59 --SDV--HQCPEGWVPVYTDASQTLAVMSIGF-------LLKNRDDAIIWRGPKKTAMIR 107
S++ Q + ++ G LL +
Sbjct: 147 GLSEILIGQGDITTA-AKPTSIAKFDLIPRGQVPPNPSELLMSE------------RF-A 192
Query: 108 QIINDVCWKDVDYLIIDTPP--GTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKE 165
+++N K+ D ++IDTPP +D I V ++V ++++V
Sbjct: 193 ELVNWAS-KNYDLVLIDTPPILAVTDAAI-VGR-----HVGTTLMVARYAVNTLKEVETS 245
Query: 166 ITFCKKTNIKILGLIENM 183
++ ++ I + G+I N
Sbjct: 246 LSRFEQNGIPVKGVILNS 263
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 62.7 bits (153), Expect = 3e-12
Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 36/198 (18%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN-- 58
M++ +++++ GK+ VS+ LA + KV +D DL +L + N
Sbjct: 99 MMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH 158
Query: 59 --SDV--HQCPEGWVPVYTDASQTLAVMSIGF-------LLKNRDDAIIWRGPKKTAMIR 107
S+ + V + V++ G LL M R
Sbjct: 159 GLSEYLAGKDELNKV-IQHFGKGGFDVITRGQVPPNPSELLMRD------------RM-R 204
Query: 108 QIINDVCWKDVDYLIIDTPP--GTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKE 165
Q++ D +I+DTPP SD + V ++LV + ++V
Sbjct: 205 QLLEWAN-DHYDLVIVDTPPMLAVSDAAV-VGR-----SVGTSLLVARFGLNTAKEVSLS 257
Query: 166 ITFCKKTNIKILGLIENM 183
+ ++ + I G I N
Sbjct: 258 MQRLEQAGVNIKGAILNG 275
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 61.1 bits (149), Expect = 9e-12
Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 38/199 (19%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIEN-- 58
D I++ S G GKST++ LA+ G+K I+D D+ P+ ++ N+ N
Sbjct: 77 NPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNE 136
Query: 59 --SDV--HQCPEGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPK--------KTAMI 106
S + + Y D+ + + ++ D ++ GP +
Sbjct: 137 GLSSLLLNWST------YQDSIISTEI-------EDLD--VLTSGPIPPNPSELITSRAF 181
Query: 107 RQIINDVCWKDVDYLIIDTPP--GTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRK 164
+ + + + +++IIDTPP +D + V V + + ++V+K
Sbjct: 182 ANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFSK------FTGNVVYVVNSENNNKDEVKK 234
Query: 165 EITFCKKTNIKILGLIENM 183
+ T K+LG++ N
Sbjct: 235 GKELIEATGAKLLGVVLNR 253
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 55.9 bits (135), Expect = 4e-10
Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 48/176 (27%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEG 67
+I V S KGGVGK+T + L+ L +G + ++D D P
Sbjct: 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGD--------------------PNR 40
Query: 68 WVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPP 127
A+ S+ F + R K A ++IDT
Sbjct: 41 S------ATGWGKRGSLPF------KVVDERQAAKYA-----------PKYQNIVIDTQA 77
Query: 128 GTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENM 183
DE + + CD V+ +TP A++++ + I +K ++ +
Sbjct: 78 RPEDEDLEAL----ADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTI 129
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 54.2 bits (130), Expect = 3e-09
Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 14/140 (10%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD 60
+LD + + GKGGVGK+T S LA+ L V +L D ++ + +
Sbjct: 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP-AHNLSDAFSQKFGK 68
Query: 61 VHQC-------------PEGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIR 107
+ P G + +G + +D A G +
Sbjct: 69 EARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFA 128
Query: 108 QIINDVCWKDVDYLIIDTPP 127
+++ V + ++ DT P
Sbjct: 129 EVLKQVNSLSYETIVFDTAP 148
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 53.4 bits (128), Expect = 8e-09
Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 63/244 (25%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP--SVPHLLNIENSD----VH 62
L +GKGGVGK+++S A+ L ++G +V ++ D P +V + + + +
Sbjct: 10 YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD---PASNVGQVFSQTIGNTIQAIA 66
Query: 63 QCP--------------EGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQ 108
P + + L + + + A
Sbjct: 67 SVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGL 126
Query: 109 IINDVCWKDVDYLIIDTPP-----------------------------------GTSDEH 133
+ + D++I DT P +++
Sbjct: 127 LTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQY 186
Query: 134 ITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENM-----SGYTC 188
+E L + + VLV Q ++++V + +K L+ N
Sbjct: 187 AYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAND 246
Query: 189 PHCK 192
Sbjct: 247 TLAA 250
Score = 45.7 bits (108), Expect = 3e-06
Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 35/219 (15%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP--SVPHLLNIENSDVHQ 63
+H +++L GKGGVGK+T++ +A+ L D GF V + D P + LN +++
Sbjct: 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD---PAAHLSMTLNGSLNNLQV 382
Query: 64 C---PEGWVPVYTDA-SQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVD 119
P Y +T + ++ + ++ A+ + +
Sbjct: 383 SRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKR 442
Query: 120 YLIIDTPP----------------------GTSDEHITVMECLREVQCDGAVLVTTPQAV 157
++++DT P G T M L++ + +LVT P+
Sbjct: 443 FVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETT 502
Query: 158 SIEDVRKEITFCKKTNIKILGLIENMS----GYTCPHCK 192
+ + ++ I G I N S P +
Sbjct: 503 PVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLR 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 2e-08
Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 48/192 (25%)
Query: 10 LVLSGKGGVGKSTVSTQLAL-GLKDKGFKV----GI--LDIDLCGPSVPHLLNIENSDVH 62
+++ G G GK+ +AL + I L++ C S +L + ++
Sbjct: 153 VLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLY 207
Query: 63 QCPEGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVC----WKDV 118
Q W +D S + + I ++ ++ P + ++ ++ +V W
Sbjct: 208 QIDPNWTS-RSDHSSNIK-LRIHS-IQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAF 262
Query: 119 DY----LIIDTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEIT------- 167
+ L+ T + +T D + T +S++ +T
Sbjct: 263 NLSCKILLT-----TRFKQVT----------D-FLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 168 FCKKTNIKILGL 179
K + + L
Sbjct: 307 LLKYLDCRPQDL 318
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter
vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 51.7 bits (124), Expect = 2e-08
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 22/135 (16%)
Query: 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLL----NIENSDVH 62
VI+V + KGG GKST++ L L G KV ++D+DL + ++
Sbjct: 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKI 64
Query: 63 QCPEGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLI 122
+ PE P+ + L+ + + ++ + A + D+++
Sbjct: 65 ELPE---PLALN----LSDNDVALAERPEEE--------QVAGFEAAFARA-MAECDFIL 108
Query: 123 IDTPPGTSDEHITVM 137
IDTP D IT M
Sbjct: 109 IDTPG--GDSAITRM 121
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 50.6 bits (121), Expect = 5e-08
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 16/134 (11%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENS--------- 59
+ + GKGGVGK+T+S AL + G K ++ D S+ L E
Sbjct: 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITEN 74
Query: 60 ------DVHQCPEGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDV 113
D E + + + M + L D A + G + A Q + +
Sbjct: 75 LYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYM 134
Query: 114 CWKDVDYLIIDTPP 127
+ D +I DT P
Sbjct: 135 TTDEYDIVIFDTAP 148
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 48.6 bits (116), Expect = 2e-07
Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 29/147 (19%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSD 60
+L+ + + GKGGVGK+T S LA+ + V ++ D P+ +L SD
Sbjct: 13 LLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTD---PA-HNL-----SD 63
Query: 61 VHQCPEGWVPVYTDASQTLAVMSI------------------GFLLKN--RDDAIIWRGP 100
G L+ M I L +D A G
Sbjct: 64 AFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGI 123
Query: 101 KKTAMIRQIINDVCWKDVDYLIIDTPP 127
+ +I+ + + D +I DT P
Sbjct: 124 DEALAFAEILKQIKSMEFDCVIFDTAP 150
Score = 26.7 bits (59), Expect = 5.0
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 149 VLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENM----SGYTCPHCK 192
V V + +S+ + + I I ++ N TCP C
Sbjct: 225 VCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCM 272
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 46.5 bits (110), Expect = 1e-06
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 33/143 (23%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGW 68
++ GKGGVGK+T+S + L +KG KV I+ D P+ H L D+ + G
Sbjct: 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD---PA--HSL----RDIFEQEFGH 78
Query: 69 VPVYTDASQTLAVMSI------------------------GFLLKNRDDAIIWRGPKKTA 104
P L V+ I L + A + G ++A
Sbjct: 79 EPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESA 138
Query: 105 MIRQIINDVCWKDVDYLIIDTPP 127
+ + + D +I DT P
Sbjct: 139 AFDVFLKYMDSNEFDVVIFDTAP 161
Score = 28.0 bits (62), Expect = 2.3
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 136 VMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENM---SGYTCPHCK 192
L + + LV P+ +SI + + + +K I I +I N C C+
Sbjct: 228 ARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCR 287
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-06
Identities = 42/209 (20%), Positives = 66/209 (31%), Gaps = 72/209 (34%)
Query: 10 LVLSGKGGVGKSTVSTQLAL---------GLKDKGFKVGILDIDLCGPSVPHLLNIENSD 60
+ G+ +T TQ AL LK KG D G H L
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA--DATFAG----HSLG----- 1765
Query: 61 VHQCPEGWVPVYTDASQTLA----VMSIGFLLKNRDDAIIWRGPKKTAMIR-QIINDVCW 115
E Y A LA VMSI + + + R +
Sbjct: 1766 -----E-----YA-A---LASLADVMSI-------ESLV------EVVFYRGMTMQVAVP 1798
Query: 116 KD----VDYLIIDTPPGT-----SDEHI-TVMECLRE-----VQ-----CDGAVLVTTPQ 155
+D +Y +I PG S E + V+E + + V+ + V
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 156 AVSIEDVRKEITFCKKTNIKILGLIENMS 184
+++ V + F K I I+ L +++S
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>3igf_A ALL4481 protein; two-domained protein consisting of the
N-terminal alpha-beta the C-terminal all beta domain.,
structural genomics; 2.00A {Nostoc SP}
Length = 374
Score = 46.1 bits (109), Expect = 2e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
IL GK GV ++ ++ A L +G +V
Sbjct: 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRV 33
Score = 28.7 bits (64), Expect = 1.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 148 AVLVTTPQAVSIEDVRKEITFCKKTNIKILGLIENMSGY 186
A LVTT + + VR ++ + I G+I+ S
Sbjct: 217 AFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVSSQT 255
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP;
1.80A {Debaryomyces hansenii}
Length = 348
Score = 42.6 bits (100), Expect = 3e-05
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLK--DKGFKVGILDID 44
++ + + GKGGVGK+T S+ +A+ L + ++ D
Sbjct: 12 IVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 42.6 bits (100), Expect = 3e-05
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLK--DKGFKVGILDID 44
++ H + + GKGGVGK+T S +A+ + + ++ D
Sbjct: 12 LITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 40.5 bits (95), Expect = 1e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51
+ + + ++G GVGKST L L G KV +L +D PS
Sbjct: 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD---PSST 96
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 40.3 bits (95), Expect = 1e-04
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 25/136 (18%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDL-------CGPSVPHLLNIENSD 60
VIL KGGVGKS +ST A KV ++D DL + L N
Sbjct: 38 VILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFY 97
Query: 61 ---VHQCPEGWVPVYTD------ASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIIN 111
+ + TD + L ++ ++ ++ ++ ++
Sbjct: 98 EGLKNGNLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFEN--------ESRLLATLLA 149
Query: 112 DVCWKDVDYLIIDTPP 127
+ D D +IIDT P
Sbjct: 150 PL-KSDYDLIIIDTVP 164
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 40.5 bits (95), Expect = 1e-04
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 45/155 (29%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGL------KDKGFKVGILDID-------LCGPSVPHLL 54
VI + + KGGV K+ + LA + + ++ ++D+D H +
Sbjct: 110 VIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLS--HKHSI 167
Query: 55 NIENSDVHQC----------------PEGW-----VPVYTDASQTLAVMSIGFL-LKNRD 92
I N+ Q P +P AS A ++ + L N
Sbjct: 168 GIVNATSAQAMLQNVSREELLEEFIVPSVVPGVDVMP----ASIDDAFIASDWRELCNEH 223
Query: 93 DAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPP 127
+ +I+ + D D++++D+ P
Sbjct: 224 LP---GQNIHAVLKENVIDKL-KSDYDFILVDSGP 254
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 40.2 bits (94), Expect = 2e-04
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51
++G G GKST + L +G KV ++ +D PS P
Sbjct: 61 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD---PSSP 97
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 40.2 bits (94), Expect = 2e-04
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51
++G GVGKST L + L ++G +V +L +D PS
Sbjct: 84 ITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD---PSST 120
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 39.9 bits (93), Expect = 2e-04
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51
LSG G GKST L ++G K+ +L +D PS
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD---PSSC 115
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 39.8 bits (92), Expect = 3e-04
Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 15/185 (8%)
Query: 8 VILVLSGKGGVGKSTVSTQLA-LGLKDKGFKVGILDID-----LCGPSVPHLLNIENSDV 61
++++ G GK+++S L LK ++ +++D P I +
Sbjct: 140 RVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILD 198
Query: 62 HQCPEGWVPVYTDASQTLAVMS----IGFLLKNRDDAIIWRGPKKTA-MIRQIINDVCWK 116
Q P + + A+ G N + + + ++ Q ++
Sbjct: 199 AQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQV 258
Query: 117 DVDYLIIDTPP--GTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNI 174
I+DTP + + + ++ + +++ + E V+K + N
Sbjct: 259 RRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKT-FGPELGNN 317
Query: 175 KILGL 179
I +
Sbjct: 318 NIFFI 322
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 38.7 bits (91), Expect = 5e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
ML I + + KGGVGK+T + LA L G +V ++D+D
Sbjct: 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLD 44
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 38.4 bits (88), Expect = 6e-04
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 14/161 (8%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEG 67
+L G+ G GK+++ + + + ++D D P+ + V +
Sbjct: 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVI---VIDNDTFKQQHPNFDEL----VKLYEKD 86
Query: 68 WVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDY----LII 123
V T S + I L + +I + T + Q + Y ++
Sbjct: 87 VVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM--LQAKGYETKMYVM 144
Query: 124 DTPPGTSDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRK 164
P S + D TP+ V+
Sbjct: 145 AVPKINSYLGT-IERYETMYADDPMTARATPKQAHDIVVKN 184
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 37.6 bits (86), Expect = 0.001
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 9/129 (6%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEG 67
+ ++L G+ G GK+T+ + I+D D PH L ++ +
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIV---IIDGDSFRSQHPHYLELQQEY----GKD 85
Query: 68 WVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWK--DVDYLIIDT 125
V D + + + L + +I + + ++ + K +V +I T
Sbjct: 86 SVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT 145
Query: 126 PPGTSDEHI 134
P S
Sbjct: 146 KPELSYLST 154
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide;
2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 37.6 bits (88), Expect = 0.001
Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 44/146 (30%)
Query: 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID-------------------LCG 47
+I + S KGGVGKST + LA L K KV ++D+D
Sbjct: 28 KIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTK 86
Query: 48 PSVPHLLNIENSDVHQC----PEGW--VPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPK 101
++ +L EN D+ +P Y L S ++++D
Sbjct: 87 FNIYEIL-KENVDIDSTIINVDNNLDLIPSYLT----LHNFSE-DKIEHKD--------- 131
Query: 102 KTAMIRQIINDVCWKDVDYLIIDTPP 127
+++ + + DY++IDT P
Sbjct: 132 --FLLKTSLGTLY-YKYDYIVIDTNP 154
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 37.5 bits (87), Expect = 0.002
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 14 GKGGVGKSTVSTQLALGLKDKGFKV 38
GKGG+GKST S+ L+ G +V
Sbjct: 48 GKGGIGKSTTSSNLSAAFSILGKRV 72
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 37.3 bits (87), Expect = 0.002
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 14 GKGGVGKSTVSTQLALGLKDKGFKV 38
GKGG+GKST + L L + G KV
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKV 33
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 35.9 bits (82), Expect = 0.003
Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 6/127 (4%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGW 68
+++L+G GKS + L L + G+ + P
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64
Query: 69 VPVYTDASQTLAVMSIGFLLKNRD---DAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDT 125
P + A + D + G R + D+ DV ++ +
Sbjct: 65 GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDL---DVLWVGVRC 121
Query: 126 PPGTSDE 132
++
Sbjct: 122 DGAVAEG 128
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 3.30A {Corynebacterium
diphtheriae}
Length = 361
Score = 36.3 bits (84), Expect = 0.003
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 15 KGGVGKSTVSTQLALGLKDKGFKVGILDID 44
KGGVGK+T+ST +A +G +V +D D
Sbjct: 10 KGGVGKTTLSTNVAHYFALQGKRVLYVDCD 39
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 35.4 bits (81), Expect = 0.004
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 21/134 (15%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGW 68
+ + G GK+T+ + +G++VG + G +++ +
Sbjct: 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 65
Query: 69 VPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPG 128
V D + R P ++ +D ++++ G
Sbjct: 66 TAVEGDGLL----------------QLHLRRPLWRLD--DVLALYAPLRLDLVLVE---G 104
Query: 129 TSDEHITVMECLRE 142
E + +R
Sbjct: 105 YKQERHPKVVLVRS 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 35.1 bits (81), Expect = 0.008
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
++ LSG G GKST+S LA L +G ++ +D
Sbjct: 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 35.1 bits (80), Expect = 0.008
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVH 62
G+ +I+V G G GK+T++ + L+D +KV +++D +P+ +I+ +
Sbjct: 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLDTGVKELPYEPSIDVREFV 68
Query: 63 QCPEGWVPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLI 122
E + V S L++ ++ + +I+ K+ DY++
Sbjct: 69 TVEE--IMREGYGPNGAIVESYDRLMEKFNE-----------YLNKILRLE--KENDYVL 113
Query: 123 IDTPPGTS 130
IDTP
Sbjct: 114 IDTPGQME 121
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 34.5 bits (79), Expect = 0.014
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLC 46
+++L+G GVGKST S LA L V +L DL
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 34.2 bits (79), Expect = 0.016
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 14 GKGGVGKSTVSTQLALGLKDKGFKV 38
GKGG+GKST + L GL G +
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTI 32
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 34.3 bits (79), Expect = 0.019
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 15 KGGVGKSTVSTQLALGL------KDKGFKVGILDID 44
KGGV K+ + LA L ++ ++D+D
Sbjct: 120 KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD 155
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 32.6 bits (74), Expect = 0.041
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGW 68
I+ ++G GVGK+ + L L + + + G ++ L + D + P
Sbjct: 7 IIWINGPFGVGKTHTAHTLHERLPGS----FVFEPEEMGQALRKLTPGFSGDPQEHPMWI 62
Query: 69 VPVYTDASQTLA 80
+
Sbjct: 63 PLMLDALQYASR 74
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 33.1 bits (76), Expect = 0.043
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
I+++ G G +G A L+ G+ + ILD +
Sbjct: 24 IVIVGGYGKLGGL-----FARYLRASGYPISILDRE 54
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 32.7 bits (75), Expect = 0.043
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
++L + G GK+T++ QL+ L+++G V + +D
Sbjct: 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 32.9 bits (75), Expect = 0.059
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLA--LGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQ 63
+ + + G G GKS ++ + L + F G+ + + LL + +
Sbjct: 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMR 205
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD;
1.50A {Pseudomonas aeruginosa}
Length = 318
Score = 32.2 bits (73), Expect = 0.073
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGA-VLVTTPQAVSIEDVRKEITFCKKTNI 174
+DY+ I +P HI LR G V+ P + E + + ++T+
Sbjct: 72 TALDYVSICSPNYLHYPHI--AAGLRL----GCDVICEKPLVPTPEMLDQLAVIERETDK 125
Query: 175 KI 176
++
Sbjct: 126 RL 127
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 31.6 bits (71), Expect = 0.100
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
I +++G GVGKSTV ++ L ++G
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINN 32
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 31.6 bits (71), Expect = 0.11
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVG 39
+HV L +G GVGK+T+ + + LK G V
Sbjct: 2 RHVFL--TGPPGVGKTTLIHKASEVLKSSGVPVD 33
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 31.2 bits (70), Expect = 0.14
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLA 28
M D + IL+LSG G GKST++ LA
Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIAEALA 30
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 30.8 bits (69), Expect = 0.21
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLA 28
M+ G +V+ G G GK+T++ +A
Sbjct: 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVA 50
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 30.7 bits (69), Expect = 0.22
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
+++++G GK+T+S LA GL + L D
Sbjct: 4 TPALIIVTGHPATGKTTLSQALATGL---RLPL--LSKD 37
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 30.8 bits (69), Expect = 0.23
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 9 ILVLSGKGGVGKSTVSTQLAL 29
+ L GG GKS ++ QLA
Sbjct: 32 VGALVSPGGAGKSMLALQLAA 52
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.4 bits (68), Expect = 0.23
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41
+K+ ++V++G GVG +T S L+ +G ++
Sbjct: 1 MKNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 30.4 bits (69), Expect = 0.24
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLN 55
L L G GVGK+ + +A L + I+ VP L
Sbjct: 57 LYLHGSFGVGKTYLLAAIANELAKRNVSSLIV-------YVPELFR 95
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.8 bits (69), Expect = 0.25
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
KH I+ ++G G G STV + +G K ++ D
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD 42
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.1 bits (68), Expect = 0.26
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 9 ILVLSGKGGVGKSTVSTQLA--LGLK 32
+++L G KSTV+ +L+ L
Sbjct: 3 LIILEGPDCCFKSTVAAKLSKELKYP 28
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 30.7 bits (69), Expect = 0.28
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGA-VLVTTPQAVSIEDVRKEITFCKKTNI 174
+ VDYL I +P I LR GA L P + E++ + +T
Sbjct: 71 EGVDYLSIASPNHLHYPQI--RMALRL----GANALSEKPLVLWPEEIARLKELEARTGR 124
Query: 175 KI 176
++
Sbjct: 125 RV 126
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.0 bits (67), Expect = 0.29
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLA 28
H I VL G G GKS V++++A
Sbjct: 7 DHHIYVLMGVSGSGKSAVASEVA 29
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 30.3 bits (69), Expect = 0.33
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
VI+ G G GK+T ++LA + KG+K
Sbjct: 103 VIM-FVGLQGSGKTTTCSKLAYYYQRKGWKT 132
>4edh_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas
aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A*
3uxm_A*
Length = 213
Score = 30.2 bits (69), Expect = 0.33
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
G GKST LA L+++G +V
Sbjct: 16 GAGKSTNRDYLAERLRERGIEV 37
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.4 bits (69), Expect = 0.37
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 116 KDVDYLIIDTPPGTSDEHITVMECLREVQCDGA-VLVTTPQAVSIEDVRKEITFCKKTNI 174
D D +I+ TP G +EC G V+ P A ED + + K
Sbjct: 74 TDADIVILTTPSGLHPTQ--SIECSEA----GFHVMTEKPMATRWEDGLEMVKAADKAKK 127
Query: 175 KIL 177
+
Sbjct: 128 HLF 130
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 29.7 bits (66), Expect = 0.38
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQC 64
+ + ++++G+ +GKS L+L L D+G ++ D+ L+ S +
Sbjct: 14 IDKMGVLITGEANIGKSE----LSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGY 69
Query: 65 PE 66
Sbjct: 70 IL 71
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.8 bits (68), Expect = 0.38
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI 40
+ +++VLSG GVGK TV + + F I
Sbjct: 7 RGLLIVLSGPSGVGKGTVREAV-FKDPETSFDYSI 40
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.8 bits (68), Expect = 0.42
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI 40
K +++VLSG GVGK TV ++ +K I
Sbjct: 5 KGLLIVLSGPSGVGKGTVRKRI-FEDPSTSYKYSI 38
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 29.8 bits (68), Expect = 0.42
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
G GKST LA L+ +G KV
Sbjct: 10 GSGKSTQIQLLAQYLEKRGKKV 31
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 29.5 bits (67), Expect = 0.47
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
GKST S L LK+ +V
Sbjct: 20 RSGKSTQSKLLVEYLKNNNVEV 41
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 29.8 bits (68), Expect = 0.51
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
VI+ L G G GK+T + +LA K KGFKV
Sbjct: 100 VIM-LVGVQGTGKTTTAGKLAYFYKKKGFKV 129
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 29.5 bits (67), Expect = 0.56
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
GKST S +L L G +
Sbjct: 19 RAGKSTQSRKLVEALCAAGHRA 40
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.5 bits (67), Expect = 0.56
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+VI+ + G G GK+T +LA LK+ GF V
Sbjct: 130 YVIMFV-GFNGSGKTTTIAKLANWLKNHGFSV 160
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 29.5 bits (67), Expect = 0.58
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 9 ILVLSGKGGVGKSTVSTQL 27
++VLSG VGKSTV L
Sbjct: 22 VVVLSGPSAVGKSTVVRCL 40
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.2 bits (65), Expect = 0.59
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 20/134 (14%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGW 68
IL + G GK+T+ T++ L+++G +V ++ G E D +
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK---EGKDSWK----- 55
Query: 69 VPVYTDASQTLAVMSIGFLLKNRDDAIIWRGPKKTAMIRQIINDVCWKDVDYLIIDTPPG 128
++ + + S A I R ++ I + D D +I + G
Sbjct: 56 ---IYNSGADVVIAS------PVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITE---G 103
Query: 129 TSDEHITVMECLRE 142
S + +++
Sbjct: 104 FSKAGKDRIVVVKK 117
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural
genomics, NPPSFA, national P protein structural and
functional analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 29.0 bits (66), Expect = 0.60
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
L G G K+T++T+LA L+ +G++V +LD D
Sbjct: 21 LPGSG---KTTIATRLADLLQKEGYRVEVLDGD 50
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 29.0 bits (66), Expect = 0.62
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
G GK+T + +L LK KG+ V
Sbjct: 10 GSGKTTQAKKLYEYLKQKGYFV 31
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 29.8 bits (68), Expect = 0.64
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 115 WKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLV 151
++ ++D PG D + L D A++
Sbjct: 71 FRGHRVFLLDA-PGYGDFVGEIRGALEAA--DAALVA 104
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 29.0 bits (66), Expect = 0.69
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 6 KHVILVLSGKGGVGKSTVSTQL 27
+VLSG G GKST+ +L
Sbjct: 3 GPRPVVLSGPSGAGKSTLLKKL 24
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 29.4 bits (67), Expect = 0.74
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
VIL L G G GK+T + +LA ++ +G K
Sbjct: 101 VIL-LVGIQGSGKTTTAAKLARYIQKRGLKP 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 29.4 bits (67), Expect = 0.79
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
++L + G G GK+T +LA + +G+KV
Sbjct: 102 ILL-MVGIQGSGKTTTVAKLARYFQKRGYKV 131
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 28.9 bits (64), Expect = 0.79
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 8 VILVLSGKGGVGKSTVSTQLA 28
+V+ G G GKS+V +A
Sbjct: 19 GSIVVMGVSGSGKSSVGEAIA 39
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 29.0 bits (65), Expect = 0.85
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 17 GVGKSTVSTQLALGLKDKGFKVGIL 41
GVGK+ V LA + G V +
Sbjct: 37 GVGKTVVCAALASAARQAGIDVAVC 61
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 28.8 bits (65), Expect = 0.97
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
G GK T+ +L+ + G V
Sbjct: 10 GAGKRTLVEKLSGAFRAAGRSV 31
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 28.8 bits (64), Expect = 1.1
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41
+ L G GKST ++ +G+KV +L
Sbjct: 231 SFQVAHLHAPTGSGKST---KVPAAYAAQGYKVLVL 263
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 28.5 bits (64), Expect = 1.1
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 17 GVGKSTVSTQLALGLKDKGFKVG 39
VGK+ S L K G++
Sbjct: 12 EVGKTVASCALLQAAKAAGYRTA 34
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in
complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo
sapiens} PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 28.3 bits (64), Expect = 1.1
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
LSG G K+TVS L L G LD D
Sbjct: 13 LSGAG---KTTVSMALEEYLVCHGIPCYTLDGD 42
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.4 bits (63), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLA 28
K + + ++G GVGKST +LA
Sbjct: 2 KKLYI-ITGPAGVGKSTTCKRLA 23
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 28.3 bits (64), Expect = 1.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI 40
+ ++S G GKS++ L +V +
Sbjct: 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 49
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 28.7 bits (64), Expect = 1.2
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 17 GVGKSTVSTQLALGLKDKGFKVG 39
GK+T + LA G K
Sbjct: 32 NAGKTTCARLLAQYCNACGVKTI 54
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 28.2 bits (64), Expect = 1.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 10 LVLSGKGGVGKSTVSTQL 27
+V+SG G GKST+ +L
Sbjct: 4 IVISGPSGTGKSTLLKKL 21
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 28.7 bits (65), Expect = 1.3
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 3 DGVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+ ++ +++ G G GK+T ++A + G+KV
Sbjct: 102 ENRLNIFMLV-GVNGTGKTTSLAKMANYYAELGYKV 136
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.4 bits (63), Expect = 1.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 11 VLSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
+ K G GKS + L L +G +V I+D +
Sbjct: 39 TILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 28.4 bits (62), Expect = 1.4
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGF---KVGILDID 44
+ SG G GKS S Q+ L +K +G ID
Sbjct: 33 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 71
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 28.3 bits (63), Expect = 1.5
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 1 MLDG--VKHVILVLSGKGGVGKSTVSTQ-LALGLKDKGFKV 38
+++G + ++L+G G GK+T + Q + G ++ G
Sbjct: 22 LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPG 62
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 28.3 bits (64), Expect = 1.5
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+I+ L G G GK+T + +LA K +G+KV
Sbjct: 99 IIM-LVGVQGSGKTTTAGKLAYFYKKRGYKV 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 28.0 bits (63), Expect = 1.5
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 12 LSGKGGVGKSTVSTQLALGLKDKGFKVGILDID 44
LSG G KST++ L L KG ILD D
Sbjct: 33 LSGSG---KSTLACALNQMLYQKGKLCYILDGD 62
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 28.6 bits (64), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
VIL++ G GVGK+T +LA + +G V
Sbjct: 294 FVILMV-GVNGVGKTTTIGKLARQFEQQGKSV 324
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 27.9 bits (62), Expect = 1.5
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+++++G G GKS + LK++G KV
Sbjct: 3 VILITGMPGSGKSEFAKL----LKERGAKV 28
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 28.1 bits (62), Expect = 1.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
++L+ SGK GK V+ L L V
Sbjct: 12 LVLLFSGKRKSGKDFVTEALQSRLGADVCAV 42
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 27.8 bits (61), Expect = 1.7
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLA 28
K + ++++G G GK++++ +A
Sbjct: 9 KGINILITGTPGTGKTSMAEMIA 31
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 28.1 bits (62), Expect = 1.7
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLNIENSDVHQCPEGW 68
++++G GVGKS AL L +G ++ D + V P
Sbjct: 37 VLITGDSGVGKSE----TALELVQRGHRLIADDRVDVYQQDEQTI------VGAAPPIL 85
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.9 bits (63), Expect = 1.7
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 10 LVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPH 52
LVL G GVG+S + L L + + VP+
Sbjct: 22 LVLIGASGVGRSHIKNAL---LSQ--------NPEKFVYPVPY 53
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in
diseases, center for structural genomics of infectious
DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio
cholerae o1 biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 28.0 bits (63), Expect = 1.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 17 GVGKSTVSTQLALGLKDKGFK 37
G GKST + L+ G
Sbjct: 37 GAGKSTAIQVVVETLQQNGID 57
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 27.9 bits (63), Expect = 1.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 17 GVGKSTVSTQLALGLKDKGFK 37
G GK+T + L+ G +
Sbjct: 13 GAGKTTARNVVVETLEQLGIR 33
>3of5_A Dethiobiotin synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, ligase;
1.52A {Francisella tularensis subsp}
Length = 228
Score = 27.7 bits (62), Expect = 1.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 17 GVGKSTVSTQLALGLKDKGFKVGIL 41
VGK+ +ST+L + + K L
Sbjct: 15 EVGKTYISTKLIEVCEHQNIKSLCL 39
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 28.1 bits (63), Expect = 1.9
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 97 WRGPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDG-AVLVTTPQ 155
+ A Q+I D +D + P E + L G P
Sbjct: 49 FPSVPFAASAEQLITD---ASIDLIACAVIPCDRAELA--LRTLDA----GKDFFTAKPP 99
Query: 156 AVSIEDVRKEITFCKKTNIK 175
++E + +T K
Sbjct: 100 LTTLEQLDAVQRRVAETGRK 119
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 27.8 bits (63), Expect = 2.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI 40
+ ++S G GK+++ AL K+ I
Sbjct: 8 NLFIISAPSGAGKTSLVR--ALVKALAEIKISI 38
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 27.6 bits (62), Expect = 2.0
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
GK+T + + K
Sbjct: 14 KSGKTTQCMNIMESIPANTIKY 35
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 27.9 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
VI+V+ G G GK+T +LA D+G V
Sbjct: 105 FVIMVV-GVNGTGKTTSCGKLAKMFVDEGKSV 135
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.1 bits (63), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGIL 41
H ++VL+G G GKST + +A + G +VG+
Sbjct: 202 AGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 1 MLDGVKHVILVLSGKGGVGKSTVSTQLA--LGLK 32
M + ++ L+ G G GK++V +QLA
Sbjct: 1 MKKNLTNIYLI--GLMGAGKTSVGSQLAKLTKRI 32
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 28.0 bits (62), Expect = 2.1
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 9 ILVLSGKGGVGKSTVSTQLA--LGLKDKGFKVGILDID 44
I+ ++G VGKST + L L + +V ++ D
Sbjct: 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 27.5 bits (62), Expect = 2.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 8 VILVLSGKGGVGKSTVSTQL 27
LV+ G GVGK T+ ++
Sbjct: 13 PPLVVCGPSGVGKGTLIKKV 32
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 27.9 bits (62), Expect = 2.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 8 VILVLSGKGGVGKSTVSTQL--ALGLKDKGFKVGILDID 44
I+ ++G VGKST + L L D +V ++ D
Sbjct: 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 27.6 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
VI+++ G G GK+T +LA LK++G KV
Sbjct: 158 AVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKV 188
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein
structure initiative II(PSI II), NYSGXRC, 11232D),
structural genomics; 2.53A {Corynebacterium glutamicum}
Length = 366
Score = 27.6 bits (62), Expect = 2.6
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 110 INDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDGAVLVTTP 154
+ D +I P +S +H++ + + DG V+ +
Sbjct: 95 VAQAA-GDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVA 138
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 27.1 bits (61), Expect = 2.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 10 LVLSGKGGVGKSTVSTQL 27
LVL G GVG+ + L
Sbjct: 8 LVLLGAHGVGRRHIKNTL 25
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 27.5 bits (62), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGI 40
VILVLS G GK+TV+ +L L + +
Sbjct: 28 VILVLSSPSGCGKTTVANKL-LEKQKNNIVKSV 59
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 27.6 bits (61), Expect = 2.7
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 18 VGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVP 51
VG V G++ G +V L G SVP
Sbjct: 617 VGLREVIDIKHGGIEKYGVEV----HYL-GTSVP 645
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 27.2 bits (61), Expect = 2.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 17 GVGKSTVSTQLALGLKDKGFKVGI 40
G GK+T L+++ G
Sbjct: 35 GAGKTTHLQWFCDRLQERLGPAGR 58
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 27.3 bits (60), Expect = 2.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
++L+G GVGK+T+ +LA
Sbjct: 14 ILLTGTPGVGKTTLGKELA 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 27.6 bits (61), Expect = 2.8
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 1 MLDG--VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
M G K I++ +G G GK+ + ++ +
Sbjct: 273 MCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERA 312
Score = 26.0 bits (57), Expect = 8.3
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 7 HVILVLSGKGGVGKSTVSTQ-LALGLKDKGFKV 38
LV SG G GK+ S Q L G+ +
Sbjct: 40 RSTLV-SGTSGTGKTLFSIQFLYNGIIEFDEPG 71
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 27.3 bits (61), Expect = 2.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
+VL G+ GVGKST++ A
Sbjct: 9 VVLIGEQGVGKSTLANIFA 27
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 27.5 bits (62), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+ L G G GK+T + +LAL K KG +
Sbjct: 100 LWF-LVGLQGSGKTTTAAKLALYYKGKGRRP 129
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 27.5 bits (62), Expect = 3.0
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 7 HVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
VI+++ G G GK+T +LA LK++G KV
Sbjct: 101 AVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKV 131
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 27.4 bits (61), Expect = 3.3
Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 106 IRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDG-AVLVTTPQAVSIEDVRK 164
+ +++ +D + I +P EH+ ++ + G ++V P +S ++ +
Sbjct: 56 LAEMMQH---VQMDAVYIASPHQFHCEHV--VQASEQ----GLHIIVEKPLTLSRDEADR 106
Query: 165 EITFCKKTNIK 175
I ++ +
Sbjct: 107 MIEAVERAGVH 117
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding,
winged helix protein, bacterial resistance to
antibiotics; NMR {Bacillus licheniformis} SCOP:
a.4.5.39 PDB: 2p7c_B
Length = 82
Score = 25.8 bits (57), Expect = 3.3
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGF 36
VI LS T+ T L L KG
Sbjct: 26 TNEVIKELSKTSTWSPKTIQTMLL-RLIKKGA 56
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.1 bits (61), Expect = 3.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 6 KHVILVLSGKGGVGKSTVSTQL 27
LV+ G GVGK T+ +L
Sbjct: 22 NIYPLVICGPSGVGKGTLIKKL 43
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 27.4 bits (61), Expect = 3.7
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48
+ I V+SG G GK+T +L L + I L P
Sbjct: 162 LTRRISVISGGPGTGKTTTVAKL-LAALIQMADGERCRIRLAAP 204
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 26.8 bits (60), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLA--LGLK 32
+LV G G GKST+ +LA LG+
Sbjct: 3 PKAVLV--GLPGSGKSTIGRRLAKALGVG 29
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 26.7 bits (60), Expect = 4.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
+VL G GVGK+++++ A
Sbjct: 7 VVLLGDPGVGKTSLASLFA 25
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 26.8 bits (60), Expect = 4.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
LV+ G GGVGKS ++ QL
Sbjct: 24 LVVVGAGGVGKSALTIQLI 42
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 26.9 bits (59), Expect = 4.2
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGP 48
K + ++G G G +T++ + L G I L P
Sbjct: 44 KKHHVTINGPAGTGATTLTKFIIEALI----STGETGIILAAP 82
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 26.5 bits (59), Expect = 4.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
+VL G+ GVGKST++ A
Sbjct: 40 VVLIGEQGVGKSTLANIFA 58
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 26.3 bits (59), Expect = 4.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLA--LGLK 32
+++ LV G G GKST+ QLA L ++
Sbjct: 5 RNIFLV--GPMGAGKSTIGRQLAQQLNME 31
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 26.7 bits (60), Expect = 4.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+ L G G GK+T + +LAL K KG +
Sbjct: 100 LWF-LVGLQGSGKTTTAAKLALYYKGKGRRP 129
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 26.4 bits (59), Expect = 5.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
+++ G GGVGKS ++ Q
Sbjct: 21 VIMVGSGGVGKSALTLQFMYD 41
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 26.4 bits (59), Expect = 5.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
LV+ G GGVGKS ++ Q
Sbjct: 21 LVVVGDGGVGKSALTIQFF 39
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 26.3 bits (59), Expect = 5.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
++L G GVGKS ++
Sbjct: 5 VLLLGAPGVGKSALARIFG 23
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 26.6 bits (59), Expect = 5.2
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 99 GPKKTAMIRQIINDVCWKDVDYLIIDTPPGTSDEHITVMECLREVQCDG-AVLVTTPQAV 157
A + ++ +DV+ +II P E + +C R G + V P +V
Sbjct: 51 NCAGDATMEALLAR---EDVEMVIITVPNDKHAEV--IEQCARS----GKHIYVEKPISV 101
Query: 158 SIEDVRKEITFCKKTNIK 175
S++ ++ K+T +K
Sbjct: 102 SLDHAQRIDQVIKETGVK 119
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 26.3 bits (59), Expect = 5.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
+++ G GGVGKS ++ Q
Sbjct: 7 VIMVGSGGVGKSALTLQFM 25
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 26.4 bits (59), Expect = 5.5
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 17 GVGKSTVSTQLALGLKDKGFKV 38
GK+T L L+ +
Sbjct: 15 RTGKTTQCNILYKKLQPNCKLL 36
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 26.3 bits (59), Expect = 5.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
+V+ G GGVGKS ++ Q G
Sbjct: 6 VVVLGSGGVGKSALTVQFVTG 26
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 26.4 bits (59), Expect = 5.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
+++ G GGVGKS ++ Q
Sbjct: 17 VIMVGSGGVGKSALTLQFM 35
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 26.3 bits (59), Expect = 5.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
LV+ G GGVGKS ++ Q G
Sbjct: 6 LVVLGSGGVGKSALTVQFVQG 26
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR
{Lactococcus lactis subsp}
Length = 99
Score = 25.6 bits (56), Expect = 5.7
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 5 VKHVILVLSGKGGVGKSTVSTQLALGLKDKGF 36
V + + + +TV T L L K
Sbjct: 52 VDEIYAQIPQELEWSLATVKTLLG-RLVKKEM 82
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 26.7 bits (58), Expect = 5.7
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 35 GFKVGILDIDLCGP--------SVPHLLNIENSDVHQCPEGWVPVYTDASQ--TLAVMSI 84
K G++ + CGP S+ +L I + P+ W+ Y++ + A +
Sbjct: 125 PLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL 184
Query: 85 GFLLKNRDDAIIWRGPKKTAM-IRQIINDVCWKDVDYLIID 124
K + I P + QI+ K++
Sbjct: 185 RPNSKILN---ICDMPVGIEDRMAQILGLSSRKEMKVRYYG 222
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus
thermophilus} SCOP: c.37.1.1
Length = 203
Score = 26.3 bits (59), Expect = 5.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 1 MLDGVKHVILV-LSGKGGVGKSTVSTQLALGLKDKGFKV 38
M KH I++ ++G G GKSTV+ L G+ V
Sbjct: 1 MGHEAKHPIIIGITGNIGSGKSTVAALLR----SWGYPV 35
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 25.9 bits (58), Expect = 6.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
+ + G VGKS+++ Q G
Sbjct: 9 IAILGYRSVGKSSLTIQFVEG 29
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 26.0 bits (58), Expect = 6.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 3 DGVKHVILVLSGKGGVGKSTVSTQLA 28
G V L + G+ G GKS ++ +
Sbjct: 17 QGPLEVNLAILGRRGAGKSALTVKFL 42
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 25.9 bits (58), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
LV+ G GGVGKS ++ QL
Sbjct: 6 LVVVGAGGVGKSALTIQLI 24
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 26.0 bits (58), Expect = 6.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
++L G+ GVGKST++
Sbjct: 26 VMLVGESGVGKSTLAGTFG 44
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 26.0 bits (58), Expect = 7.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
L + G+ GVGKS + +
Sbjct: 31 LAIFGRAGVGKSALVVRFL 49
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 26.4 bits (58), Expect = 7.2
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 124 DTPPGT---SDEHITVMECLREVQCDGAVLVTTPQAVSIEDVRKEITFCKKTNIKILGLI 180
TP G + IT E L D ++ A D+ I + +I G+I
Sbjct: 104 KTPGGAGLGTGITITPQE-LLTRPADAPYILVVSSAFDFADIASVINASLRAGYQITGVI 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 26.0 bits (58), Expect = 7.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 6 KHVILVLSGKGGVGKSTVSTQLA--LGLK 32
+ + +V G G G +TV +LA LG +
Sbjct: 3 EPIFMV--GARGCGMTTVGRELARALGYE 29
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 25.9 bits (58), Expect = 7.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 10 LVLSGKGGVGKSTVSTQLA 28
++L G+ GVGKST++
Sbjct: 5 VMLVGESGVGKSTLAGTFG 23
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 26.0 bits (58), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
+V+ G GGVGKS++ + G
Sbjct: 11 VVVFGAGGVGKSSLVLRFVKG 31
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 25.9 bits (58), Expect = 7.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
+ + G GGVGKS++ + G
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKG 26
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase
1; transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 26.3 bits (58), Expect = 7.7
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 GVKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDIDLCGPSVPHLLN 55
G + + L+G G GK+TVS L L G LD G ++ LN
Sbjct: 49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD----GDNIRQGLN 96
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 26.2 bits (58), Expect = 7.8
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 1 MLDG--VKHVILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+L G + +++LSG G GK+ S Q G
Sbjct: 15 ILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPG 54
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 26.2 bits (57), Expect = 7.8
Identities = 3/36 (8%), Positives = 10/36 (27%)
Query: 8 VILVLSGKGGVGKSTVSTQLALGLKDKGFKVGILDI 43
+ +GG + + + ++I
Sbjct: 120 ECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINI 155
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 26.1 bits (57), Expect = 8.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 10 LVLSGKGGVGKSTVSTQLALG---LKDKGFKVG 39
+++ GKGGVGKS + + ++ +
Sbjct: 42 ILVMGKGGVGKS------STVNSIIGERVVSIS 68
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 25.6 bits (57), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
LV+ G GGVGKS ++ Q
Sbjct: 12 LVVVGGGGVGKSALTIQFIQS 32
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 25.6 bits (57), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 10 LVLSGKGGVGKSTVSTQLALG 30
+V+ G VGK++++ Q G
Sbjct: 27 VVILGYRCVGKTSLAHQFVEG 47
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 26.1 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 9 ILVLSGKGGVGKSTVSTQLALGLKDKGFKV 38
+L+++G GGVG +++TQ+A K G +V
Sbjct: 154 LLIINGAGGVG--SIATQIA---KAYGLRV 178
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner
membrane, membrane, phosphoprotein, transferase,
transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1
PDB: 1ojg_A
Length = 142
Score = 25.6 bits (56), Expect = 9.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 69 VPVYTDASQTLAVMSIGFLLKNRDDAI 95
P+Y + + + V++IG L I
Sbjct: 111 TPIYDENHKQIGVVAIGLELSRVTQQI 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.431
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,981,963
Number of extensions: 175403
Number of successful extensions: 953
Number of sequences better than 10.0: 1
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 227
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)