Query psy998
Match_columns 380
No_of_seqs 222 out of 1111
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 00:35:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r31_A ATP12 ATPase; chaperone 100.0 4.6E-58 1.6E-62 434.3 15.9 174 193-367 7-238 (239)
2 2r6i_A AGR_C_2717P, uncharacte 100.0 3.4E-55 1.2E-59 422.5 15.6 172 193-364 49-280 (284)
3 3j20_L 30S ribosomal protein S 100.0 4.8E-29 1.6E-33 207.6 10.7 99 48-151 2-101 (102)
4 3r8n_J 30S ribosomal protein S 100.0 3.1E-30 1.1E-34 213.3 3.2 97 49-149 1-97 (98)
5 2xzm_J Ribosomal protein S10 c 100.0 2.4E-28 8.3E-33 208.7 13.0 103 45-152 14-118 (120)
6 3u5c_U 40S ribosomal protein S 100.0 2.2E-28 7.6E-33 209.1 12.6 103 44-151 16-119 (121)
7 2vqe_J 30S ribosomal protein S 100.0 5.3E-30 1.8E-34 214.4 -0.3 101 48-152 2-102 (105)
8 3iz6_J 40S ribosomal protein S 99.9 1.9E-28 6.5E-33 211.2 6.2 104 43-151 22-126 (128)
9 2zkq_j 40S ribosomal protein S 99.9 7.7E-28 2.6E-32 205.4 8.8 102 45-151 15-117 (119)
10 3bbn_J Ribosomal protein S10; 99.9 1.6E-27 5.5E-32 217.6 7.7 105 42-150 91-197 (197)
11 3d3c_J 30S ribosomal protein S 99.7 1.8E-17 6.3E-22 133.9 9.5 79 47-150 8-86 (87)
12 3r2c_J Protein NUSE, 30S ribos 99.7 1.8E-16 6.1E-21 127.0 8.4 78 48-150 4-81 (83)
13 1ztd_A Hypothetical protein PF 30.1 35 0.0012 28.3 3.0 20 307-326 75-94 (133)
14 2ln3_A De novo designed protei 24.4 1.2E+02 0.0042 22.6 4.9 47 50-99 29-75 (83)
15 3awu_B MELC; tyrosinase, binar 22.1 53 0.0018 27.9 2.7 47 209-257 70-127 (134)
16 3iz5_N 60S ribosomal protein L 21.1 53 0.0018 27.9 2.6 32 320-356 71-102 (134)
No 1
>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A {Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A 2zd2_A
Probab=100.00 E-value=4.6e-58 Score=434.30 Aligned_cols=174 Identities=28% Similarity=0.433 Sum_probs=170.7
Q ss_pred CCCCccceeeeeEEeCCcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccccCCCcccc---------------
Q psy998 193 EKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHL--------------- 257 (380)
Q Consensus 193 ~~~kRFyk~v~v~~~~gg~~V~LDgR~lkTP~~~~l~vPs~~LA~aiA~EW~~Q~e~I~p~~MPL--------------- 257 (380)
..+|||||+|+|.+.+|||+|+||||+||||+|++|+||+++||.+||+||++|++.|+|++|||
T Consensus 7 ~~~kRFyk~v~v~~~~gg~~V~LDgR~lkTP~~~~L~vPs~~LA~aiA~EW~~Q~~~I~p~~MPlT~La~tAiD~~~~~r 86 (239)
T 2r31_A 7 WKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPNAMPLTRSANSAIEKVAPQF 86 (239)
T ss_dssp HHTBCCCSCEEEEEETTEEEEEETTEECBCTTSCBCCBSCHHHHHHHHHHHHTCCSBCCGGGCHHHHHHHHHHHTTGGGH
T ss_pred cccccceeeceEEecCCceEEEeCCCCCCCCCCCeeecCcHHHHHHHHHHHHHhhccCccCCCcHHHHHHHHHccCcccH
Confidence 34799999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------ccCceeeeecCCCCCCCCHHHHHHHHHHHhcCChhhh
Q psy998 258 -------------------------------------------RYNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFETV 294 (380)
Q Consensus 258 -------------------------------------------~~gv~l~~~~gi~~~~q~~~~~~~l~~~l~~l~~~~L 294 (380)
+||++|.+++||++++||++++++++++|.+||+|+|
T Consensus 87 ~~v~~~ll~y~~tD~l~yra~~p~~L~~~Q~~~wdPll~w~~~~~g~~l~~~~gi~~~~Q~~~~~~~~~~~l~~l~~~~L 166 (239)
T 2r31_A 87 DAVAAMLGDYGGTDLLSYRADAPEALVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGL 166 (239)
T ss_dssp HHHHHHHHHGGGSCGGGEECCCCHHHHHHHHHHHHHHHHHHHHHSSCCCCCEETTCCCCCCHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCeEEEecCCcHHHHHHHHHHhHHHHHHHHHHcCCceeeecCccCCCCCHHHHHHHHHHHHcCCHHHH
Confidence 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHhhhhhcCcCCCcCHhHHHHHHHHHHHHHHHHhcc
Q psy998 295 MGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNT 367 (380)
Q Consensus 295 ~al~~~~~~~kS~vlalal~~g~l~~e~A~~~a~lEe~~Q~~~WG~VE~~HD~e~~~~~~~l~aa~lf~~l~~ 367 (380)
+||+.+|.++||+|||+|+++|++++|+||++|||||+||+++||+|||+||+++++ +++++||++|+++++
T Consensus 167 aal~~~~~~~kS~ilalal~~g~~~~e~a~~~a~lEe~~Q~e~WG~ve~ahd~~~~~-~~~l~aa~l~~~l~~ 238 (239)
T 2r31_A 167 TALHDLVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASR-LAAMRDSERFWHLTR 238 (239)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTTSSCHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHHHHHCCCchHhHHHHHH-HHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999875
No 2
>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural genomics, APC6123, PSI-2, protein STRU initiative; 2.59A {Agrobacterium tumefaciens str} SCOP: d.381.1.1
Probab=100.00 E-value=3.4e-55 Score=422.51 Aligned_cols=172 Identities=26% Similarity=0.354 Sum_probs=165.1
Q ss_pred CCCCccceeeeeEEeC-CcEEEEeCCCcCCCCCCCeeeeCcHHHHHHHHHHHhhcccccCCCcccc--------------
Q psy998 193 EKPKRFYKKVGILESN-GDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHL-------------- 257 (380)
Q Consensus 193 ~~~kRFyk~v~v~~~~-gg~~V~LDgR~lkTP~~~~l~vPs~~LA~aiA~EW~~Q~e~I~p~~MPL-------------- 257 (380)
..+|||||+|+|.+.+ |||+|+||||+||||+|++|+||+++||.|||+||++|++.|+|++|||
T Consensus 49 ~~~KRFyK~v~V~~~~~gg~~V~LDgR~lKTP~k~~L~vPs~~LA~aIA~EW~aQ~e~I~p~~MPLT~La~tAID~~~~~ 128 (284)
T 2r6i_A 49 PLPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPVVMPVSRHVNTAIDGIASD 128 (284)
T ss_dssp TSCBCCCSCEEEEECTTSCEEEEETTEECBCTTSCBCCBSSHHHHHHHHHHHHTCSSBCCGGGCHHHHHHHHHHHTTGGG
T ss_pred hhcccceeeceeEEcCCCCeEEEeCCCcCCCCCCCeeecCcHHHHHHHHHHHHhhhccCccCCCcHHHHHHHHHccCcch
Confidence 3579999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------ccCceeeeecCCCCCCCCHHHHHHHHHHHhcC-Chh
Q psy998 258 --------------------------------------------RYNTSISYSNDIAGPSVDPKDRATIQRHFLSY-NFE 292 (380)
Q Consensus 258 --------------------------------------------~~gv~l~~~~gi~~~~q~~~~~~~l~~~l~~l-~~~ 292 (380)
+||++|.+++||+++.||++++++++++|.+| |+|
T Consensus 129 r~~v~~~ll~yl~tDtlcyra~~p~~L~~~Q~e~wdPll~w~~~~~gv~l~~~~gi~~~~Qp~~t~~~l~~~l~~l~~~~ 208 (284)
T 2r6i_A 129 TQAVFEDILRFSSSDLLCYRAGDPEALVARQTDYWDPVLDWATNVLGARFILVEGVMHRDQPREAIAAFAVTLKKYDTPI 208 (284)
T ss_dssp HHHHHHHHHHHHHTCTTTEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEESSSCCCCCHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHhcCCceEEEeCCCcHHHHHHHHHHhHHHHHHHHHHcCCceeeeCCccCCCCCHHHHHHHHHHHHhcCCHH
Confidence 78999999999999999999999999999999 999
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHhhhhHHHhhhhhcCcCCCcCHhHHHHHHHHHHHHHHHH
Q psy998 293 TVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVH 364 (380)
Q Consensus 293 ~L~al~~~~~~~kS~vlalal~~g~l~~e~A~~~a~lEe~~Q~~~WG~VE~~HD~e~~~~~~~l~aa~lf~~ 364 (380)
+|+||+.+|.++||+|||+|+++|++++|+||++|||||+||+++||+|||+||+++++.+..++||.+|..
T Consensus 209 ~Laal~~~v~~~kSlilalal~~g~l~~eeA~~aa~LEE~~Q~e~WG~vEeahd~~~~~~~~~~~Aa~~~~~ 280 (284)
T 2r6i_A 209 ALAALHTMTSLTGSAILALALAEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLIDMRAALNVLES 280 (284)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTTSSCHHHHHHHTTHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHhhhhHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877777755543
No 3
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.96 E-value=4.8e-29 Score=207.58 Aligned_cols=99 Identities=10% Similarity=0.151 Sum_probs=93.9
Q ss_pred eEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCC-cccceeeEEEEEEEEEEEecCCH
Q psy998 48 SRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVV-KRCRVQYEVRTYFRWMNFHKLTG 126 (380)
Q Consensus 48 ~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~-KKSreqFElrtykR~I~I~~~~~ 126 (380)
++|+|+|+|||+..||+++.+|.++|+..|++++||+ ||||++.+||++||||+| ||||||||+|+|+|+|+| +.++
T Consensus 2 ~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~Gpi-plPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlIdi-~~~~ 79 (102)
T 3j20_L 2 QKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPI-PLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDI-EADE 79 (102)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHSSSCEEEEEE-EEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEE-EECH
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccccc-cCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEEE-eCCH
Confidence 6899999999999999999999999999999999999 999999999999999999 999999999999999999 6788
Q ss_pred HHHHHHHHHHHccCCCCceEEEEEE
Q psy998 127 STADTFLEYIQRNLPEGVALKVTKY 151 (380)
Q Consensus 127 ~~~~~fl~~l~~~lP~GV~i~Ik~~ 151 (380)
.+++.++ +.++|+||+|+|++.
T Consensus 80 ~~v~~l~---~~~lp~GV~vei~~~ 101 (102)
T 3j20_L 80 RAMRQIM---RIRVPEDVTIEIELI 101 (102)
T ss_dssp HHHHHHT---TSCCCSSCEEEEEEE
T ss_pred HHHHHHh---cCcCCCCcEEEEEEe
Confidence 7777765 899999999999874
No 4
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=99.96 E-value=3.1e-30 Score=213.30 Aligned_cols=97 Identities=28% Similarity=0.407 Sum_probs=93.9
Q ss_pred EEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCCcccceeeEEEEEEEEEEEecCCHHH
Q psy998 49 RICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGST 128 (380)
Q Consensus 49 ~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~KKSreqFElrtykR~I~I~~~~~~~ 128 (380)
+|+|+|+|||+..||+++.+|+++|+.+|++++||+ ||||++.+||++||||++||||||||+|+|+|+|+|.++++.+
T Consensus 1 ~irI~L~s~d~~~Ld~~~~~i~~~ak~~g~~v~Gpi-~lPtk~~~~tvlrSPh~~kksreqfE~rthkRlIdi~~~~~~~ 79 (98)
T 3r8n_J 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPI-PLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKT 79 (98)
T ss_dssp CBCCEEEBSCHHHHHHHHHHHHHHHHHSSCCCCCCC-CCCCCEEEEEECCSSSSCTTCCEEEEEECBCCCCCBSCCCTTT
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHhCCeecccc-CCCCeEEEEEEecCCCCCCchhHhEEEEEEEEEEEEeCCCHHH
Confidence 478999999999999999999999999999999999 9999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHccCCCCceEEEE
Q psy998 129 ADTFLEYIQRNLPEGVALKVT 149 (380)
Q Consensus 129 ~~~fl~~l~~~lP~GV~i~Ik 149 (380)
++.|+ +.++|+||+|+|+
T Consensus 80 v~~l~---~~~lp~GV~vev~ 97 (98)
T 3r8n_J 80 VDALM---RLDLAAGVDVQIS 97 (98)
T ss_dssp TTTTT---TCCCCTTCEEECC
T ss_pred HHHHH---cCcCCCCcEEEEE
Confidence 99987 8999999999986
No 5
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J
Probab=99.95 E-value=2.4e-28 Score=208.75 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=97.7
Q ss_pred cceeEEEEEEEEcChhhHHHHHHHHHHHHHH-cCCeecccccCCceeeEEEEEecccC-CCcccceeeEEEEEEEEEEEe
Q psy998 45 KLYSRICCELRANDPEVMNSYSKFATAAAQH-LNIEIGECYAQKKAHHERYTLLRSVH-VVKRCRVQYEVRTYFRWMNFH 122 (380)
Q Consensus 45 ~~~~~I~I~LkS~D~~~Le~~~~~I~~~ak~-l~i~v~g~~a~LPTk~~~~TvlRSPh-v~KKSreqFElrtykR~I~I~ 122 (380)
..+++|+|+|+|||+..||++|.+|.+.|+. .|+.++||+ ||||++++||++|||| +|||||||||+|+|+|+|+|.
T Consensus 14 ~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~~g~~v~GPi-pLPtk~~~~TvlRSPhgv~kksreqFE~RthKRlIdI~ 92 (120)
T 2xzm_J 14 VKKVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPV-RMPTKTLVITVRKSPCGEGSKTWDRFEMRIYKRIIDLT 92 (120)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHHHTSTTCEEEEEE-ECCCEEEEEEEECSSSSCSSCCEEEEEEEEEEEEEEEE
T ss_pred ccceEEEEEEEECCHHHHHHHHHHHHHHHHHhcCCeeecCc-CCCceeEEEEEEeCCCCCCCcchHheEEEEEEEEEEEe
Confidence 4678999999999999999999999999999 999999999 9999999999999999 899999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCceEEEEEEe
Q psy998 123 KLTGSTADTFLEYIQRNLPEGVALKVTKYE 152 (380)
Q Consensus 123 ~~~~~~~~~fl~~l~~~lP~GV~i~Ik~~~ 152 (380)
++++ +++.|+ +.++|+||+|+|++..
T Consensus 93 ~~~~-tv~~l~---~l~lp~GV~ieI~i~~ 118 (120)
T 2xzm_J 93 CNVP-DVKTIT---NFRIDPGVEIELTMTA 118 (120)
T ss_dssp ECHH-HHHHHS---CSCCCSSEEEEEEEEC
T ss_pred CCcH-HHHHHH---cCcCCCCCEEEEEEec
Confidence 9887 888876 8999999999998764
No 6
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=99.95 E-value=2.2e-28 Score=209.08 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=95.6
Q ss_pred ccceeEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCC-cccceeeEEEEEEEEEEEe
Q psy998 44 DKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVV-KRCRVQYEVRTYFRWMNFH 122 (380)
Q Consensus 44 d~~~~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~-KKSreqFElrtykR~I~I~ 122 (380)
+..+++|+|+|+|||+..||++|.+|.+.|+..|+.++||+ ||||++.+||++||||++ ||||||||+|+|+|+|+|.
T Consensus 16 ~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPi-pLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI~ 94 (121)
T 3u5c_U 16 QQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPV-RLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLE 94 (121)
T ss_dssp CCCCCCEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEE-EEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEEC
T ss_pred cccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeecCc-CCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEec
Confidence 34789999999999999999999999999999999999999 999999999999999997 9999999999999999998
Q ss_pred cCCHHHHHHHHHHHHccCCCCceEEEEEE
Q psy998 123 KLTGSTADTFLEYIQRNLPEGVALKVTKY 151 (380)
Q Consensus 123 ~~~~~~~~~fl~~l~~~lP~GV~i~Ik~~ 151 (380)
+ ++.+++.++ +.++|+||+|+|++.
T Consensus 95 ~-~~~~v~~l~---~~~lp~GV~vei~i~ 119 (121)
T 3u5c_U 95 A-PVQIVKRIT---QITIEPGVDVEVVVA 119 (121)
T ss_dssp C-CHHHHHHHH---HSSCCTTCEEEECCS
T ss_pred C-CHHHHHHHH---cCcCCCCCEEEEEEc
Confidence 6 566776665 899999999999753
No 7
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ...
Probab=99.95 E-value=5.3e-30 Score=214.39 Aligned_cols=101 Identities=20% Similarity=0.321 Sum_probs=95.3
Q ss_pred eEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCCcccceeeEEEEEEEEEEEecCCHH
Q psy998 48 SRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGS 127 (380)
Q Consensus 48 ~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~KKSreqFElrtykR~I~I~~~~~~ 127 (380)
++|+|+|+|||+..||+|+++|+++|+.+|++++||+ ||||++.+||++||||+|||||||||+|+|+|+|+|.+.+++
T Consensus 2 ~kirI~Lks~d~~~Ld~~~~~i~~~ak~~g~~v~gpi-~LPtk~~~~tvlrSPhv~kksreqfE~r~hkR~I~i~~~~~~ 80 (105)
T 2vqe_J 2 PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPI-PLPTRVRRFTVIRGPFKHKDSREHFELRTHNRLVDIINPNRK 80 (105)
T ss_dssp -CBCEEEEESCSSTTTTTTTHHHHTTTSSSCCCCCCC-CCCCBCCEEECCSSSSSCTTCCCEEECCBEEECCCBSSCCTT
T ss_pred cEEEEEEEEcCHHHHHHHHHHHHHHHHHhCCcccCcc-CCCCEEEEEEEEcCCCCCCChHHhEEeEEEEEEEEEeCCCHH
Confidence 5789999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCceEEEEEEe
Q psy998 128 TADTFLEYIQRNLPEGVALKVTKYE 152 (380)
Q Consensus 128 ~~~~fl~~l~~~lP~GV~i~Ik~~~ 152 (380)
+++.|+ +.++|+||+|+|++++
T Consensus 81 ~~~~l~---~~~lp~GV~iei~~~~ 102 (105)
T 2vqe_J 81 TIEQLM---TLDLPTGVEIEIKTVG 102 (105)
T ss_dssp HHHHSS---SCCCCSSCEEEECC--
T ss_pred HHHHHH---hCcCCCCCEEEEEEEe
Confidence 999987 7999999999998765
No 8
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=1.9e-28 Score=211.18 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=96.9
Q ss_pred CccceeEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCC-cccceeeEEEEEEEEEEE
Q psy998 43 PDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVV-KRCRVQYEVRTYFRWMNF 121 (380)
Q Consensus 43 ~d~~~~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~-KKSreqFElrtykR~I~I 121 (380)
.+..+++|+|+|+|||+..||+++.+|.+.|+..|+.++||+ ||||++.+||++||||+| ||||||||+|+|+|+|+|
T Consensus 22 ~~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPi-pLPTk~~r~TvlRSPhv~gKkSrEqFE~RtHKRlIdI 100 (128)
T 3iz6_J 22 SQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPV-RMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDL 100 (128)
T ss_dssp CSSSBCCCCCCEEEEESCHHHHHHHHHHHHHHHHHHSSCCCC-CEEEEEEEEEEECCCCCSSCCSSCCEEEEEEEEEEEC
T ss_pred ccccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCceeccc-CCCCceEEEEEEecCCCCCCcchhheEEEEEEEEEEE
Confidence 456899999999999999999999999999999999999999 999999999999999999 899999999999999999
Q ss_pred ecCCHHHHHHHHHHHHccCCCCceEEEEEE
Q psy998 122 HKLTGSTADTFLEYIQRNLPEGVALKVTKY 151 (380)
Q Consensus 122 ~~~~~~~~~~fl~~l~~~lP~GV~i~Ik~~ 151 (380)
.+. +.+++.++ +.++|+||+|+|++.
T Consensus 101 ~~~-~~~v~~l~---~l~lP~GV~veI~i~ 126 (128)
T 3iz6_J 101 VSS-ADVVKQIT---SITIEPGVEVEVTIS 126 (128)
T ss_dssp CSS-CCHHHHHH---HHHSCCCSSCEEECC
T ss_pred eCc-HHHHHHHh---CCcCCCCCEEEEEEe
Confidence 975 66777666 899999999999864
No 9
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.94 E-value=7.7e-28 Score=205.36 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=90.8
Q ss_pred cceeEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCC-CcccceeeEEEEEEEEEEEec
Q psy998 45 KLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHV-VKRCRVQYEVRTYFRWMNFHK 123 (380)
Q Consensus 45 ~~~~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv-~KKSreqFElrtykR~I~I~~ 123 (380)
..+++|+|+|+|||+..||++|.+|.+.|+..|+.++||+ ||||++.+||++||||+ +||||||||+|+|+|+|+|.+
T Consensus 15 ~~~~kirI~LkS~d~~~Ld~~~~~i~~~ak~~g~~v~GPi-pLPtk~~r~TvlRSPhg~~KksreqFE~RthKRlIdI~~ 93 (119)
T 2zkq_j 15 VAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPV-RMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHS 93 (119)
T ss_dssp ----CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCC-CCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCCCCCBCS
T ss_pred ccceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCcccCCc-CCCCeeEEEEEEcCCCCCCCcchHheEeEEEEEEEEEeC
Confidence 4789999999999999999999999999999999999999 99999999999999995 699999999999999999987
Q ss_pred CCHHHHHHHHHHHHccCCCCceEEEEEE
Q psy998 124 LTGSTADTFLEYIQRNLPEGVALKVTKY 151 (380)
Q Consensus 124 ~~~~~~~~fl~~l~~~lP~GV~i~Ik~~ 151 (380)
. +++++.++ +.++|+||+|+|++.
T Consensus 94 ~-~~~v~~l~---~~~lp~GV~ieI~i~ 117 (119)
T 2zkq_j 94 P-SEIVKQIT---SISIEPGVEVEVTIA 117 (119)
T ss_dssp C-THHHHHHH---HCCCCSSEEEEEC--
T ss_pred h-HHHHHHHH---cCcCCCCCEEEEEEe
Confidence 6 56766665 899999999999764
No 10
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.94 E-value=1.6e-27 Score=217.62 Aligned_cols=105 Identities=26% Similarity=0.325 Sum_probs=95.2
Q ss_pred CCccc--eeEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCCcccceeeEEEEEEEEE
Q psy998 42 VPDKL--YSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWM 119 (380)
Q Consensus 42 ~~d~~--~~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~KKSreqFElrtykR~I 119 (380)
.+|.. .++|+|+|+|||+..||+++++|.+.|+..|++++||+ +|||++++||++||||+|||+|||||+|+|||+|
T Consensus 91 e~~~m~~~~kIRI~LkS~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPI-pLPTK~~r~TVLRSPHv~KKSREQFEmRtHKRlI 169 (197)
T 3bbn_J 91 DSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPV-PLPTKKRIFCVLKSPHVHKDARFHFEIRTHQRLI 169 (197)
T ss_dssp --------CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEE-ECCCEEEEECCCCSSSSCCSSCCCEEEEEEEEEE
T ss_pred cccccccCcEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCeeecCc-CCCCeeEEEEEeeCCCCCCCcceeEEEEEEEEEE
Confidence 36665 37999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHccCCCCceEEEEE
Q psy998 120 NFHKLTGSTADTFLEYIQRNLPEGVALKVTK 150 (380)
Q Consensus 120 ~I~~~~~~~~~~fl~~l~~~lP~GV~i~Ik~ 150 (380)
+|.+.++++++.|+ +.++|+||+|+|++
T Consensus 170 dI~~~t~~tvd~lm---~l~LP~GV~IEIkl 197 (197)
T 3bbn_J 170 DILYPTAQTIDSLM---QLDLPAGVDVEVKL 197 (197)
T ss_dssp EESSCCHHHHHHHT---TCCCCSSCEEEEEC
T ss_pred EEECCCHHHHHHHH---cCcCCCCCEEEEeC
Confidence 99999988888776 89999999999973
No 11
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=99.72 E-value=1.8e-17 Score=133.93 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=75.4
Q ss_pred eeEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCCcccceeeEEEEEEEEEEEecCCH
Q psy998 47 YSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTG 126 (380)
Q Consensus 47 ~~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~KKSreqFElrtykR~I~I~~~~~ 126 (380)
.++|+|+|+|||+..||++|.+|.+.|+..|+.++||+ |||||+ |+|||+|+|.++++
T Consensus 8 ~~kirI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPi-pLPTk~---------------------R~HKRlIdi~~~~~ 65 (87)
T 3d3c_J 8 NQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPI-PLPTRS---------------------RTHLRLVDIVEPTE 65 (87)
T ss_dssp SCEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEE-EEEEET---------------------TEEEEEEEEESCCH
T ss_pred ceEEEEEEEECCHHHHHHHHHHHHHHHHHhCCccCCCC-CCCCCC---------------------ceEEEEEEEeCCCH
Confidence 47999999999999999999999999999999999999 999987 99999999999999
Q ss_pred HHHHHHHHHHHccCCCCceEEEEE
Q psy998 127 STADTFLEYIQRNLPEGVALKVTK 150 (380)
Q Consensus 127 ~~~~~fl~~l~~~lP~GV~i~Ik~ 150 (380)
++++.++ +.++|+||+++|++
T Consensus 66 ~~v~~l~---~l~lp~GV~ieI~i 86 (87)
T 3d3c_J 66 KTVDDLM---RLDLAAGVDVQISL 86 (87)
T ss_dssp HHHHHHH---HCCCCTTEEEEEEE
T ss_pred HHHHHHH---cCCCCCCceEEEEE
Confidence 9999988 89999999999986
No 12
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=99.66 E-value=1.8e-16 Score=127.02 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=74.9
Q ss_pred eEEEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecccCCCcccceeeEEEEEEEEEEEecCCHH
Q psy998 48 SRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGS 127 (380)
Q Consensus 48 ~~I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRSPhv~KKSreqFElrtykR~I~I~~~~~~ 127 (380)
++|+|+|+|||+..||++|+.|.+.|+..|+.++||+ ||||++.+| ||+|+|+++++.
T Consensus 4 ~kiRI~L~S~d~~~Ld~~~~~Iv~~ak~~g~~v~GPi-pLPTk~~~~---------------------KRlIdi~~~~~~ 61 (83)
T 3r2c_J 4 EKIRIKLRAYDHRLLDQSVKQIIETVKRTGGVVKGPI-PLPTRKSEF---------------------SRILDIIRFTPQ 61 (83)
T ss_dssp CCEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEEE-EEEEETTEE---------------------EEEEEEEECCHH
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHHHHhCCeeeCCc-CCCCcceEE---------------------EEEEEEcCCCHH
Confidence 6899999999999999999999999999999999999 999999999 999999999999
Q ss_pred HHHHHHHHHHccCCCCceEEEEE
Q psy998 128 TADTFLEYIQRNLPEGVALKVTK 150 (380)
Q Consensus 128 ~~~~fl~~l~~~lP~GV~i~Ik~ 150 (380)
+++.++ +.++|+||+++|++
T Consensus 62 ~v~~l~---~l~lp~GV~vei~~ 81 (83)
T 3r2c_J 62 TIEALM---EISLPAGVDVEVKM 81 (83)
T ss_dssp HHHHHH---TCCCCTTCEEEEEC
T ss_pred HHHHHh---CCCCCCCcEEEEEE
Confidence 999988 89999999999986
No 13
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=30.08 E-value=35 Score=28.34 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCCCHHHHHHH
Q psy998 307 IVLTLACIDRKLSIEEAVHL 326 (380)
Q Consensus 307 ~vlalal~~g~l~~e~A~~~ 326 (380)
.+||.|.++|.++.++|++.
T Consensus 75 A~iAyAWleG~is~eEavei 94 (133)
T 1ztd_A 75 ALIAKAWLMGLISEREAVEI 94 (133)
T ss_dssp HHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHH
Confidence 58999999999999999976
No 14
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=24.41 E-value=1.2e+02 Score=22.63 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=38.3
Q ss_pred EEEEEEEcChhhHHHHHHHHHHHHHHcCCeecccccCCceeeEEEEEecc
Q psy998 50 ICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRS 99 (380)
Q Consensus 50 I~I~LkS~D~~~Le~~~~~I~~~ak~l~i~v~g~~a~LPTk~~~~TvlRS 99 (380)
+.+.+.|.|-+.++.|......+|+..|+.+..-| ...+.++.+.-|
T Consensus 29 levefdstddkeieeferdmedlakktgvqiqkqw---qgnklrirlkgs 75 (83)
T 2ln3_A 29 LEVEFDSTDDKEIEEFERDMEDLAKKTGVQIQKQW---QGNKLRIRLKGS 75 (83)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHHHHTCCEEEEE---ETTEEEEEEESS
T ss_pred eEEEecCCChHHHHHHHhHHHHHHHhhchhHHHHh---cCCeEEEEeccc
Confidence 57888999999999999999999999999998877 345556655544
No 15
>3awu_B MELC; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 3awt_B 3aws_B 3awv_B 3aww_B 3ax0_B 3awy_B 3awz_B 3awx_B 1wxc_B 1wx2_B 1wx4_B 1wx5_B 1wx3_B 2ahk_B 2ahl_B 2zmx_B 2zmy_B 2zmz_B 2zwd_B 2zwe_B* ...
Probab=22.09 E-value=53 Score=27.89 Aligned_cols=47 Identities=26% Similarity=0.352 Sum_probs=28.7
Q ss_pred CcEEEEeCCCcCC---CCCCCeee-------eCc-HHHHHHHHHHHhhcccccCCCcccc
Q psy998 209 GDYEISLDHRKLK---TPNGVLFK-------VSS-EPLALAIAAEWDAQHETIQRSTMHL 257 (380)
Q Consensus 209 gg~~V~LDgR~lk---TP~~~~l~-------vPs-~~LA~aiA~EW~~Q~e~I~p~~MPL 257 (380)
+||.|++|||+|- --.|.-|+ +|+ .++|.+.-.|- |+-.+.|.+++|
T Consensus 70 ~~~~V~IDGRpLhvMr~AdGs~lS~v~HYes~pTPl~AARaAVdEL--~gA~L~p~~~~~ 127 (134)
T 3awu_B 70 GGYEVFVDGVQLHVMRNADGSWISVVSHYDPVPTPRAAARAAVDEL--QGAPLLPFPANL 127 (134)
T ss_dssp CSEEEEETTEEECEEECTTSCEEETTEEEEEESSHHHHHHHHHHHH--TTCCBCCC----
T ss_pred CceEEEecCeecceeeccCCcEecceeccCCCCCHHHHHHHHHHHh--ccccccCCCCcc
Confidence 6799999999874 44466554 355 35555555554 466777887776
No 16
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=21.11 E-value=53 Score=27.95 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=27.0
Q ss_pred HHHHHHHhhhhHHHhhhhhcCcCCCcCHhHHHHHHHH
Q psy998 320 IEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARL 356 (380)
Q Consensus 320 ~e~A~~~a~lEe~~Q~~~WG~VE~~HD~e~~~~~~~l 356 (380)
+..||+.+.+++.|....||. -++..+.|+.|
T Consensus 71 v~ka~~~a~i~~kw~~s~wak-----k~~~~~~Ra~l 102 (134)
T 3iz5_N 71 LIKAMEEADVKNKWENSSWGK-----KLIVQKRRASL 102 (134)
T ss_dssp HHHHHHHHCTHHHHHHHSSSC-----CHHHHHHHHSC
T ss_pred HHHHHHHcCHHHHHHHhHHHH-----HHHHHHHHHcC
Confidence 568999999999999999999 77777766654
Done!