RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy998
(380 letters)
>gnl|CDD|203677 pfam07542, ATP12, ATP12 chaperone protein. Mitochondrial F1-ATPase
is an oligomeric enzyme composed of five distinct
subunit polypeptides. The alpha and beta subunits make
up the bulk of protein mass of F1. In Saccharomyces
cerevisiae both subunits are synthesised as precursors
with amino-terminal targeting signals that are removed
upon translocation of the proteins to the matrix
compartment. These proteins include examples from
eukaryotes and bacteria and may have chaperone activity,
being involved in F1 ATPase complex assembly.
Length = 122
Score = 94.1 bits (235), Expect = 1e-23
Identities = 42/100 (42%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 196 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTM 255
KRFYK+V + E G + + LD R +KTP V SE LA AIAAEWDAQ E I +TM
Sbjct: 1 KRFYKEVSVEEEEGGFAVLLDGRPVKTPAKNPLAVPSEALAEAIAAEWDAQGEVIDPATM 60
Query: 256 HLR--YNTSISYSNDIAGPSVDPKDRATIQRHFLSYNFET 293
L NT+I D+ DR + L Y +T
Sbjct: 61 PLTRLANTAI----DLVAE-----DRDAVIEDLLRY-LDT 90
>gnl|CDD|201165 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e. This family
includes small ribosomal subunit S10 from prokaryotes
and S20 from eukaryotes.
Length = 97
Score = 84.5 bits (210), Expect = 3e-20
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 54 LRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRVQYEVR 113
L++ D +++ SY KF AA+ L I++ R T+LRS HV K+ R Q+E+R
Sbjct: 5 LKSYDHKLLESYVKFIVEAAKRLGIKVSGPIPLPTKR-LRVTVLRSPHVDKKSREQFEMR 63
Query: 114 TYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTK 150
T+ R ++ + T T D L + +LPEGV +++
Sbjct: 64 THKRLIDIYDATPETVDQLL---RIDLPEGVDVEIKL 97
>gnl|CDD|227677 COG5387, COG5387, Chaperone required for the assembly of the
mitochondrial F1-ATPase [Posttranslational modification,
protein turnover, chaperones].
Length = 264
Score = 71.8 bits (176), Expect = 3e-14
Identities = 58/237 (24%), Positives = 85/237 (35%), Gaps = 79/237 (33%)
Query: 195 PKRFYKKVGILES-NGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 253
PKRFYKK + G + I LD R LKTP G V +E LA +A EWDAQ E+I
Sbjct: 32 PKRFYKKATAADVEKGGFAIQLDGRTLKTPAGKPLVVPTEALAYLLALEWDAQSESIDPH 91
Query: 254 TMHLR--YNTSISYSNDIAGPSVDPKDRATIQRHFLSY---------------------- 289
+M L NT+I + IA D + L +
Sbjct: 92 SMPLTRLVNTAI---DGIAE------DSQAVFEQILRFLDTDLLCYRAESPFELVERQNE 142
Query: 290 -------NFETVMGVNFAV-----------ETLKSI---------VLTLACIDR------ 316
E +G F + E + + LA ++
Sbjct: 143 NWDPIIDWAENFLGARFILVDGVIHGEQPREAVAAFAVKLMSLDSPWALAALETMVSLTG 202
Query: 317 -----------KLSIEEAVHLSKLEEEYQIGHWGRVEWA-HDLHQQELQARLAAAIF 361
+LS E+A L+ L+E++Q WG E A + ++ +AA +
Sbjct: 203 SFILALALLEGELSAEKAWALAHLDEDWQAEQWGSDEEATERRKNRLIEMAIAARVI 259
>gnl|CDD|130121 TIGR01049, rpsJ_bact, ribosomal protein S10, bacterial/organelle.
This model describes bacterial 30S ribosomal protein
S10. In species that have a transcription
antitermination complex, or N utilization substance,
with NusA, NusB, NusG, and NusE, this ribosomal protein
is responsible for NusE activity. Included in the family
are one member each from Saccharomyces cerevisiae and
Schizosaccharomyces pombe. These proteins lack an
N-terminal mitochondrial transit peptide but contain
additional sequence C-terminal to the ribosomal S10
protein region [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 99
Score = 53.4 bits (129), Expect = 3e-09
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 54 LRANDPEVMNSYSKFATAAAQHLNIEI-GECYAQKKAHHERYTLLRSVHVVKRCRVQYEV 112
L++ D +++ +K A+ ++ G K ERYT+LRS HV K R Q+E+
Sbjct: 7 LKSYDHRLLDQSTKKIVETAKRTGAQVKGPIPLPTKK--ERYTVLRSPHVNKDSREQFEI 64
Query: 113 RTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTK 150
RT+ R ++ T D ++ +LP GV +++
Sbjct: 65 RTHKRLIDIIDPNPKTIDALMKL---DLPAGVDIEIKL 99
>gnl|CDD|179076 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.
Length = 102
Score = 46.3 bits (111), Expect = 9e-07
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 90 HHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKV 148
ER+T+LRS HV K R Q+E+RT+ R ++ T T D ++ +LP GV +++
Sbjct: 45 KKERFTVLRSPHVNKDSREQFEIRTHKRLIDIVDPTPKTVDALMKL---DLPAGVDVEI 100
>gnl|CDD|223129 COG0051, RpsJ, Ribosomal protein S10 [Translation, ribosomal
structure and biogenesis].
Length = 104
Score = 42.6 bits (101), Expect = 2e-05
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 49 RICCELRANDPEVMNSYSKFATAAAQHLNIEI-GECYAQKKAHHERYTLLRSVHVVKRCR 107
+I L++ D +++ + A+ ++ G K ER T+LRS H K R
Sbjct: 5 KIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKR--ERVTVLRSPHGEKDSR 62
Query: 108 VQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYE 152
Q+E+RT+ R ++ T T D + +LP GV +++
Sbjct: 63 EQFEMRTHKRLIDIVDPTPKTVDALMRL---DLPAGVDVEIKLES 104
>gnl|CDD|177057 CHL00135, rps10, ribosomal protein S10; Validated.
Length = 101
Score = 38.8 bits (91), Expect = 5e-04
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 94 YTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGV 144
Y +LRS HV K R +E+RT+ R ++ + + T D+ ++ +LP GV
Sbjct: 52 YCVLRSPHVDKDSREHFEIRTHKRIIDIYYPSSETIDSLMKL---DLPPGV 99
>gnl|CDD|216147 pfam00844, Gemini_coat, Geminivirus coat protein/nuclear export
factor BR1 family. It has been shown that the 104
N-terminal amino acids of the maize streak virus coat
protein bind DNA non- specifically. This family also
includes various geminivirus movement proteins that are
nuclear export factors or shuttles. One member BR1
facilitates the export of both ds and ss DNA form the
nucleus.
Length = 244
Score = 30.0 bits (68), Expect = 1.6
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 87 KKAHHERYTLLRSVHVV-----------KRCRVQYEVRTYFRWMNFH 122
K+ +R+ + R V + Q VR +F+W+
Sbjct: 150 KRDLRDRFVVKRKWKRVVSSEGDTNMVDFPGKNQLSVRRFFKWLGVK 196
>gnl|CDD|227283 COG4947, COG4947, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 227
Score = 29.1 bits (65), Expect = 3.6
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 299 FAVETLKSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAA 358
F +E L+ I + D ++ HLS+L + QI W W H + AA
Sbjct: 166 FRLERLRRIDMVFCIGDEDPFLDNNQHLSRLLSDKQIPAWMH-VWGGVAHDWGWWRKQAA 224
Query: 359 AIF 361
Sbjct: 225 YFI 227
>gnl|CDD|166018 PLN02377, PLN02377, 3-ketoacyl-CoA synthase.
Length = 502
Score = 29.2 bits (65), Expect = 3.8
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 115 YFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTL-LESGSPET 173
+ R+M +LTG D+ LE+ QR + E L Y + + H++PP + + E
Sbjct: 116 FARFMEHSRLTGDFDDSSLEF-QRKILERSGLGEDTYVPEAM--HYIPPRPSMAAAREEA 172
Query: 174 SSVPLKYPFCCSETFTHSTEKPKRFYKKVGILESN 208
V F ++ P K +GIL N
Sbjct: 173 EQVMFG---ALDNLFANTNVNP----KDIGILVVN 200
>gnl|CDD|107319 cd06324, PBP1_ABC_sugar_binding_like_13, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
This group includes the periplasmic sugar-binding domain
of uncharacterized ABC-type transport systems that share
homology with a family of pentose/hexose sugar-binding
proteins of the type I periplasmic binding protein
superfamily, which consists of two domains connected by
a three-stranded hinge. The substrate specificity of
this group is not known, but it is predicted to be
involved in the transport of sugar-containing molecules
and chemotaxis.
Length = 305
Score = 28.9 bits (65), Expect = 4.7
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 63 NSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSV-HVVKRC-RVQYEVRTYFRWMN 120
NS ++F AAA L IE+ YA+ +R+ +L+ +++R + + T +
Sbjct: 16 NSVARFMQAAADDLGIELEVLYAE----RDRFLMLQQARTILQRPDKPDALIFTNEK--- 68
Query: 121 FHKLTGSTADTFLE 134
S A L
Sbjct: 69 ------SVAPELLR 76
>gnl|CDD|238140 cd00228, eu-GS, Eukaryotic Glutathione Synthetase (eu-GS);
catalyses the production of glutathione from
gamma-glutamylcysteine and glycine in an ATP-dependent
manner. Belongs to the ATP-grasp superfamily.
Length = 471
Score = 28.5 bits (64), Expect = 7.0
Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 31/147 (21%)
Query: 214 SLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRSTMHLRYNTSISYSNDIAGPS 273
+L + K N + + + +A A+A W+ Y + A
Sbjct: 163 ALGYSKGLDSNRIPSNNAVKGIAEALAKAWE-------------------EYGDPRAVVL 203
Query: 274 --VDPKDRATIQRHFLSYNFETVMGVNFAVETLKSIVLTLACIDRKLSIEEAVHLSKLEE 331
V ++R + FL + I TLA +D + S+++ L +
Sbjct: 204 FVVQNEERNIYDQRFLEAELLERHQI-------HVIRKTLADVDEEGSLDDDGTLFVDGQ 256
Query: 332 EYQIGHWGRVEWAHDLH--QQELQARL 356
E + ++ R + D + + E +ARL
Sbjct: 257 EVAVVYF-RAGYTPDDYPSESEWEARL 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.386
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,954,445
Number of extensions: 1780339
Number of successful extensions: 1323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 18
Length of query: 380
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 281
Effective length of database: 6,546,556
Effective search space: 1839582236
Effective search space used: 1839582236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)