RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy998
(380 letters)
>2r6i_A AGR_C_2717P, uncharacterized protein ATU1473; chaperone, structural
genomics, APC6123, PSI-2, protein STRU initiative; 2.59A
{Agrobacterium tumefaciens str} SCOP: d.381.1.1
Length = 284
Score = 132 bits (333), Expect = 2e-36
Identities = 50/241 (20%), Positives = 76/241 (31%), Gaps = 60/241 (24%)
Query: 185 SETFTHSTEKPKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEW 243
PKRFYK V + + G + I LD + L+TP S LA + EW
Sbjct: 41 RAQIQMQKPLPKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEW 100
Query: 244 DAQHETIQRSTMHLR--YNTSISYSNDIAGPSVD---------------PKDRATIQRHF 286
DAQ E + M + NT+I + A + R
Sbjct: 101 DAQKEVVNPVVMPVSRHVNTAIDGIASDTQAVFEDILRFSSSDLLCYRAGDPEALVARQT 160
Query: 287 LSYN-----FETVMGVNFAV-------------------------------------ETL 304
++ V+G F +
Sbjct: 161 DYWDPVLDWATNVLGARFILVEGVMHRDQPREAIAAFAVTLKKYDTPIALAALHTMTSLT 220
Query: 305 KSIVLTLACIDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVH 364
S +L LA + +L++EEA L+ L+E++ WG E A + L AA
Sbjct: 221 GSAILALALAEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLIDMRAALNVLES 280
Query: 365 V 365
+
Sbjct: 281 L 281
>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A
{Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A
2zd2_A
Length = 239
Score = 119 bits (298), Expect = 1e-31
Identities = 47/237 (19%), Positives = 74/237 (31%), Gaps = 72/237 (30%)
Query: 191 STEKPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETI 250
S K +RF+ VGI + G + + LD R L+TP ++ +E LALAIA EW A E I
Sbjct: 5 SEWKARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVI 64
Query: 251 QRSTMHLRYNTSISYSNDIAGPSVDPKDRATIQRHFLSY--------------------- 289
+ M S + + + + Y
Sbjct: 65 DPNAMP--LTRSANSAIEKV-----APQFDAVAAMLGDYGGTDLLSYRADAPEALVRAQA 117
Query: 290 --------NFETVMGVNF--------------AVETLKSIV-----LTLACI-------- 314
T + + L++ V L +
Sbjct: 118 EGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPG 177
Query: 315 ---------DRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFY 362
++ A LS+++EE+Q WGR E A L A + F+
Sbjct: 178 SLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASRLAAMRDSERFW 234
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP:
d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J
1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M*
1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J*
2b9o_J* ...
Length = 105
Score = 62.0 bits (151), Expect = 3e-12
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 49 RICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRV 108
+I +LR D + +++ ++ AA+ ++ R+T++R K R
Sbjct: 3 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQV-SGPIPLPTRVRRFTVIRGPFKHKDSRE 61
Query: 109 QYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKV 148
+E+RT+ R ++ T + + +LP GV +++
Sbjct: 62 HFELRTHNRLVDIINPNRKTIEQLM---TLDLPTGVEIEI 98
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_J 3fih_J* 2wwl_J 3oar_J
3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J
4a2i_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* 2avy_J 2aw7_J
1vs5_J ...
Length = 98
Score = 60.4 bits (147), Expect = 7e-12
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 49 RICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRV 108
RI L+A D +++ + A+ ++ ER+T+L S HV K R
Sbjct: 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQV-RGPIPLPTRKERFTVLISPHVNKDARD 59
Query: 109 QYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVT 149
QYE+RT+ R ++ + T T D + + +L GV ++++
Sbjct: 60 QYEIRTHLRLVDIVEPTEKTVDALM---RLDLAAGVDVQIS 97
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 197
Score = 59.8 bits (144), Expect = 1e-10
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 4 SDFRPLLFTDGSRRLLNGSTSTANIRHSSSVISQEKEPVPDKLYSRICCELRANDPEVMN 63
S+ R + G S +S + + +I +LR+ ++
Sbjct: 55 SNVRVFAAPEVLESQETGPESYVEEGSETSALGIGADSDQMAPKQKIRIKLRSYWVPLIE 114
Query: 64 SYSKFATAAAQHLNIEIGE--CYAQKKAHHERYTLLRSVHVVKRCRVQYEVRTYFRWMNF 121
K AA+ N + KK + +L+S HV K R +E+RT+ R ++
Sbjct: 115 DSCKQIMDAARTTNAKTMGPVPLPTKK---RIFCVLKSPHVHKDARFHFEIRTHQRLIDI 171
Query: 122 HKLTGSTADTFLEYIQRNLPEGVALKVT 149
T T D +Q +LP GV ++V
Sbjct: 172 LYPTAQTID---SLMQLDLPAGVDVEVK 196
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Length = 121
Score = 48.0 bits (114), Expect = 3e-07
Identities = 14/113 (12%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 38 EKEPVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLL 97
E++ + +I L + + + + S A+ N+ + + + +
Sbjct: 10 EEQEQQQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVK-KGPVRLPTKVLKISTR 68
Query: 98 RSVHV-VKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVT 149
++ + + YE+R + R+++ + Q + GV ++V
Sbjct: 69 KTPNGEGSKTWETYEMRIHKRYIDLE----APVQIVKRITQITIEPGVDVEVV 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 77/515 (14%), Positives = 137/515 (26%), Gaps = 187/515 (36%)
Query: 7 RPLLFTDGSRRLLNGSTSTANIRHSSSV-------ISQEKE------PVP-------DKL 46
RPL + GS + H V SQ +E P P D+
Sbjct: 7 RPLTLSHGS------------LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 47 YSRICCELRA---------NDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLL 97
+ EL +P + + + CY + H L
Sbjct: 55 TTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----NCYLEGNDIHALAAKL 108
Query: 98 RSVHVVKRCRVQYEVRTYFRWMNF--HKLTGSTADTFLEYIQRNLPEGVAL-----KVTK 150
+ + + ++ Y + + + VA+
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 151 Y--ELQKL---PSHFVPPTLLESGSP---ETSSVPLKYPFCCSETF------THSTEKPK 196
Y EL+ L V L++ + E L ++ + + P
Sbjct: 169 YFEELRDLYQTYHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 197 RFYKKVGILESNGDYEIS--------LDH-----RKL-KTPN-------GVLFKVSSEPL 235
+ Y L S IS L H + L TP G
Sbjct: 228 KDY-----LLS---IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 236 ALAIA--AEWDAQHETIQ-----------RSTMHLRY-NTSI-------SYSNDIAGPS- 273
A+AIA W++ +++ R + Y NTS+ S N+ PS
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRC--YEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 274 ---VDPKDRATIQRH------FLSYNFETVMGV-----NFAV----ETLKSIVLTL---- 311
+ + +Q + L + + + N V ++L + LTL
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 312 --ACID--------RK-------LSIEEAVH-------LSKLEEEYQIGHWGRVEW-AHD 346
+ +D RK L + H + ++ + V + A D
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN---VSFNAKD 454
Query: 347 LH-----------QQELQA----RLAAAIFYVHVN 366
+ + L R+ I + V
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 34.3 bits (78), Expect = 0.076
Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 40/129 (31%)
Query: 230 VSSEPLALAIAAEWDAQHETIQRSTMHLRYN-TSISYSNDIAGPSVDPKDRATIQRHFLS 288
V + P+ L I H ++ +R N +++ + + G K I H S
Sbjct: 1665 VINNPVNLTI-------HFGGEKGK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 289 YNFE--------T------VMGVNFAV-ETLKS---IVLT-------------LACIDRK 317
Y F T + + A E LKS I LA +
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 318 LSIEEAVHL 326
+SIE V +
Sbjct: 1777 MSIESLVEV 1785
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 4e-06
Identities = 41/232 (17%), Positives = 81/232 (34%), Gaps = 34/232 (14%)
Query: 34 VISQEKEPVPDKLYSRICCELRANDPE-VMNSYSKFATAAAQHLN---IEIGECYAQKKA 89
+ +P L S I ++ +D V+N K+ + + I I Y + K
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKV 437
Query: 90 HHERYTLLRSVHVVKRCRVQYEVRTYFRWMNFHKLTGSTADT-FLEYIQRNLPE-GVALK 147
E ++H + Y + F + D F +I +L +
Sbjct: 438 KLEN---EYALH--RSIVDHYNIPKTFDSDDLIPP---YLDQYFYSHIGHHLKNIEHPER 489
Query: 148 VTKYELQKLPSHFVPPTLLESGSPETSSVPLKYPFCCSETFTHSTEKPKRFYKKVGILES 207
+T + + L F+ + + +S + +T + +FYK I ++
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-----------NTLQQLKFYKPY-ICDN 537
Query: 208 NGDYEISLDHRK--LKTPNGVLFKV-SSEPLALAIAAEWDAQHET----IQR 252
+ YE ++ L L ++ L +A+ AE +A E +QR
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 47.2 bits (111), Expect = 8e-06
Identities = 66/392 (16%), Positives = 117/392 (29%), Gaps = 120/392 (30%)
Query: 32 SSVISQEKEPVPD-KLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQ---- 86
S + +++++P ++Y + ND +V Y N+ + Y +
Sbjct: 96 SPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKY-----------NVSRLQPYLKLRQA 143
Query: 87 -KKAHHERYTLL-------RSVHVVKRCRVQYEVRTYFR----WMNFHKLTGSTADTFLE 134
+ + L+ ++ + C Y+V+ W+N ++ +T LE
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKVQCKMDFKIFWLNLKNC--NSPETVLE 200
Query: 135 YIQRNLPEGVALKVTKYELQKLPSHFVPPTLLESGSPETSSVPL--KYPFC--------- 183
+Q L ++ + + S E + Y C
Sbjct: 201 MLQ-KL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 184 --CSETFTHS------TEKPKRFYKKVGILESNGDYEISLDHRKLK-TPN---GVLFKV- 230
F S T RF + L + ISLDH + TP+ +L K
Sbjct: 256 AKAWNAFNLSCKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 231 ------------SSEPLALAIAAE--------WD--------AQHETIQRSTMHLRYNTS 262
++ P L+I AE WD I+ S L
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 263 ISYSNDIAGPSVDPKD----RATIQRHFLSYNFETVMGVNFAVETL--KSIV-------- 308
+ ++ V P + + VM V V L S+V
Sbjct: 372 RKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKEST 425
Query: 309 -----LTLACIDRKLSIEEAVHLSKLEEEYQI 335
+ L + KL E A+H + + Y I
Sbjct: 426 ISIPSIYLE-LKVKLENEYALH-RSIVDHYNI 455
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 128
Score = 43.4 bits (102), Expect = 1e-05
Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 36 SQEKEPVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEI-GECYAQKKAHHERY 94
+ ++ RI L + + + A+ ++++ G
Sbjct: 15 GKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVR--MPTKVLHI 72
Query: 95 TLLRSVHVV-KRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVT 149
T +S ++E+R + R ++ S+AD + + GV ++VT
Sbjct: 73 TTRKSPCGEGTNTWDRFEMRVHKRVIDLV----SSADVVKQITSITIEPGVEVEVT 124
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 119
Score = 41.0 bits (96), Expect = 8e-05
Identities = 16/113 (14%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 38 EKEPVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLL 97
+ P+ RI L + + + + A+ N+++ + + R T
Sbjct: 8 KTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKV-KGPVRMPTKTLRITTR 66
Query: 98 RS-VHVVKRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVT 149
++ + ++++R + R ++ H S ++ + ++ GV ++VT
Sbjct: 67 KTPCGEGSKTWDRFQMRIHKRLIDLH----SPSEIVKQITSISIEPGVEVEVT 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.7 bits (94), Expect = 1e-04
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 27/56 (48%)
Query: 196 KRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQ 251
K+ KK L++ SL KL + S P ALAI A T++
Sbjct: 19 KQALKK---LQA------SL---KLYADD-------SAP-ALAIKA-------TME 47
Score = 27.6 bits (60), Expect = 4.1
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 6/22 (27%)
Query: 150 KYELQKLPSH---FVP---PTL 165
K L+KL + + P L
Sbjct: 19 KQALKKLQASLKLYADDSAPAL 40
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_J
Length = 120
Score = 38.0 bits (88), Expect = 8e-04
Identities = 16/120 (13%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 33 SVISQEKEPVPDKLYSRICCELRANDPEVMN-SYSKFATAAAQHLNIEI-GECYAQKKAH 90
+ K+ + R+ L + + + + S+ + A + +E+ G
Sbjct: 2 DATKETKKGEEEVKKVRVRITLTCKNLKSVEKATSEIVSRAKKTEQVEVKGPVR--MPTK 59
Query: 91 HERYTLLRSVHVV-KRCRVQYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVT 149
T+ +S + ++E+R Y R ++ + GV +++T
Sbjct: 60 TLVITVRKSPCGEGSKTWDRFEMRIYKRIIDLT----CNVPDVKTITNFRIDPGVEIELT 115
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 30.0 bits (68), Expect = 1.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 246 QHETIQRSTMHLRYNTSISYSNDIA 270
+ +++ +H RYN + DIA
Sbjct: 77 KISMLEKIYIHPRYNWRENLDRDIA 101
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 29.8 bits (67), Expect = 1.4
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 246 QHETIQRSTMHLRYNTSISYSNDIA 270
+ +++ +H RYN + DIA
Sbjct: 242 KISMLEKIYIHPRYNWRENLDRDIA 266
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 29.7 bits (67), Expect = 1.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 246 QHETIQRSTMHLRYNTSISYSNDIA 270
+ +++ +H RYN + DIA
Sbjct: 107 KISMLEKIYIHPRYNWRENLDRDIA 131
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 29.5 bits (67), Expect = 1.6
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 244 DAQHETIQRSTMHLRYNTSISYSNDIA 270
+ +H Y + NDIA
Sbjct: 64 HYTQAWSEAVFIHEGYTHDAGFDNDIA 90
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 29.7 bits (67), Expect = 1.6
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 244 DAQHETIQRSTMHLRYNTSISYSNDIA 270
+ +H Y + NDIA
Sbjct: 225 HYTQAWSEAVFIHEGYTHDAGFDNDIA 251
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.2
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 316 RKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFYVHVNTLKESNGVK 375
RK E+ L +L+ ++ EW + +++L+ + + E K
Sbjct: 88 RKWREEQRKRLQELDAASKV---MEQEWR-EKAKKDLEE------WNQRQSEQVE----K 133
Query: 376 KKASN 380
K +N
Sbjct: 134 NKINN 138
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 28.7 bits (65), Expect = 2.6
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 242 EWDAQHETIQRSTMHLRYN--TSISYSNDIA 270
+ Q + +S H YN +S+DI
Sbjct: 60 DQPEQEIQVAQSIQHPCYNNSNPEDHSHDIM 90
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 28.0 bits (63), Expect = 5.0
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 242 EWDAQHETIQRSTMHLRYNTSISYSNDIA 270
Q I++ + Y+ +D+
Sbjct: 64 TDVTQTFGIEKYIPYTLYSVFNPSDHDLV 92
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal
stress protein, unknown function; HET: ATP; 1.70A
{Thermus thermophilus} PDB: 3ab7_A*
Length = 268
Score = 27.8 bits (62), Expect = 5.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 16 RRLLNGSTSTANIRHS 31
RRL+ GST+ IR++
Sbjct: 245 RRLVFGSTAERVIRNA 260
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 27.5 bits (62), Expect = 5.9
Identities = 4/29 (13%), Positives = 6/29 (20%)
Query: 242 EWDAQHETIQRSTMHLRYNTSISYSNDIA 270
D Q + + DI
Sbjct: 60 NEDEQTRNPKEKFICPNKKNDEVLDKDIM 88
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 27.3 bits (61), Expect = 8.1
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 242 EWDAQHETIQRSTMHLRYNTSISYSNDIA 270
Q I++ + Y+ +D+
Sbjct: 99 TDVTQTFGIEKYIPYTLYSVFNPSDHDLV 127
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 27.2 bits (61), Expect = 8.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 246 QHETIQRSTMHLRYNTSISYSNDIA 270
I+ + H RY + ND+A
Sbjct: 64 LTFHIKAAIQHPRYKPVPALENDLA 88
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 27.6 bits (62), Expect = 9.1
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 130 DTFLEYIQRNLPEGVALKVTKYELQKLPSHFVPPTLLESGSPE 172
++++ + + + ++V P ++ES P+
Sbjct: 398 ARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQ 440
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.386
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,695,578
Number of extensions: 326805
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 32
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)