RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy998
(380 letters)
>d2r31a1 d.381.1.1 (A:6-238) ATP12 ATPase {Paracoccus denitrificans
[TaxId: 266]}
Length = 233
Score = 138 bits (349), Expect = 1e-39
Identities = 54/229 (23%), Positives = 79/229 (34%), Gaps = 62/229 (27%)
Query: 194 KPKRFYKKVGILESNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 253
K +RF+ VGI + G + + LD R L+TP ++ +E LALAIA EW A E I +
Sbjct: 3 KARRFWASVGIHKEEGGWAVLLDERPLRTPGKQPLRLPTEALALAIAEEWQAVQEVIDPN 62
Query: 254 TMHLRYNTSISYSNDIAGPSVD---------------------PKDRATIQ--------- 283
M S + + + P D P+ Q
Sbjct: 63 AMP--LTRSANSAIEKVAPQFDAVAAMLGDYGGTDLLSYRADAPEALVRAQAEGWDPLID 120
Query: 284 --RHFLSYNFETVMGV----------------------------NFAVETLKSIVLTLAC 313
L GV + V S++L LA
Sbjct: 121 WAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHDLVTLPGSLILGLAV 180
Query: 314 IDRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFY 362
I ++ A LS+++EE+Q WGR E A L A + F+
Sbjct: 181 IRGRIDAPTAHALSRIDEEFQAERWGRDEEAEAQAASRLAAMRDSERFW 229
>d2r6ia1 d.381.1.1 (A:1-261) Uncharacterized protein Atu1473
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 261
Score = 129 bits (325), Expect = 1e-35
Identities = 50/228 (21%), Positives = 77/228 (33%), Gaps = 60/228 (26%)
Query: 195 PKRFYKKVGILE-SNGDYEISLDHRKLKTPNGVLFKVSSEPLALAIAAEWDAQHETIQRS 253
PKRFYK V + + G + I LD + L+TP S LA + EWDAQ E +
Sbjct: 30 PKRFYKDVTVADVEEGGFTILLDGKPLRTPAKKPLVAPSRALADLLRDEWDAQKEVVNPV 89
Query: 254 TMHLRY--NTSISYSNDIAGPSVD---------------PKDRATIQRHFLSYN-----F 291
M + NT+I + A + R ++
Sbjct: 90 VMPVSRHVNTAIDGIASDTQAVFEDILRFSSSDLLCYRAGDPEALVARQTDYWDPVLDWA 149
Query: 292 ETVMGVNFAV-----------ETLKSI--------------------------VLTLACI 314
V+G F + E + + +L LA
Sbjct: 150 TNVLGARFILVEGVMHRDQPREAIAAFAVTLKKYDTPIALAALHTMTSLTGSAILALALA 209
Query: 315 DRKLSIEEAVHLSKLEEEYQIGHWGRVEWAHDLHQQELQARLAAAIFY 362
+ +L++EEA L+ L+E++ WG E A + L AA
Sbjct: 210 EGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLIDMRAALNVL 257
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus
thermophilus [TaxId: 274]}
Length = 98
Score = 79.7 bits (197), Expect = 3e-19
Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 49 RICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRV 108
+I +LR D + +++ ++ AA+ ++ R+T++R K R
Sbjct: 1 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPT-RVRRFTVIRGPFKHKDSRE 59
Query: 109 QYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKV 148
+E+RT+ R ++ T + + + +LP GV +++
Sbjct: 60 HFELRTHNRLVDIINPNRKTIE---QLMTLDLPTGVEIEI 96
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 72.4 bits (178), Expect = 1e-16
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 49 RICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCRV 108
RI L+A D +++ + A+ ++ ER+T+L S HV K R
Sbjct: 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT-RKERFTVLISPHVNKDARD 59
Query: 109 QYEVRTYFRWMNFHKLTGSTADTFLEYIQRNLPEGVALKVT 149
QYE+RT+ R ++ + T T D + +L GV ++++
Sbjct: 60 QYEIRTHLRLVDIVEPTEKTVDALMRL---DLAAGVDVQIS 97
>d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 208
Score = 27.3 bits (60), Expect = 2.8
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 55 RANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSV-HVVKRCRVQYEVR 113
R +DP F A + ++ E ++ ++ +R + ++K C +
Sbjct: 3 REDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLS 62
Query: 114 TYFRWMNFHKLTGSTADTFLEYI-QRNLPEGVALKVTKY 151
F + + + Y Q + +Y
Sbjct: 63 --FPI----RRDDGSWEVIEGYRAQHSHQRTPCKGGIRY 95
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh
{Thermus aquaticus [TaxId: 271]}
Length = 88
Score = 25.8 bits (57), Expect = 2.9
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 121 FHKLTGSTA------DTFLEYIQRNLPEG-VALKVTKYELQKLPSHFVPPTLLESGSP 171
+L G L I+R L + V L+V + ++++ + +LES +P
Sbjct: 13 IGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTP 70
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 217
Score = 26.4 bits (58), Expect = 5.5
Identities = 12/74 (16%), Positives = 16/74 (21%), Gaps = 9/74 (12%)
Query: 39 KEPVPDKLYSRICCELRANDPEVMNSYSKFATAAAQHLNIEIGECYAQKKAHH------- 91
+ ELR N N +A + + Y Q
Sbjct: 62 HNEAAGTYSVYMIQELRLNTLN--NVVELWALTYLRWFEVNPLAHYRQFNPDANILNRPL 119
Query: 92 ERYTLLRSVHVVKR 105
Y L S K
Sbjct: 120 NYYNKLFSETANKN 133
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 26.1 bits (57), Expect = 6.2
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 275 DPKDRATIQRHFLSY--NFETVMGVNFAVETL-KSIVLTLACIDRKLSIEEAVHLSKLEE 331
D + I HF + N ++ V L T ++ L+ E +
Sbjct: 95 DMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKA 154
Query: 332 EYQIGHWGR-VEWAHDLHQQELQARLAAAIFYVHVNTL 368
Y H GR ++W L L+A V+
Sbjct: 155 FYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLF 192
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase
{Bacillus subtilis [TaxId: 1423]}
Length = 159
Score = 25.3 bits (55), Expect = 9.3
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 63 NSYSKFATAAAQHLNIEIGECYAQKKAHHERYTLLRSVHVVKRCR 107
NS + A A + +++G+C + + E +++ + R
Sbjct: 8 NSNPELAKEIADIVGVQLGKCSVTRFSDGEVQ-----INIEESIR 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.386
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,382,052
Number of extensions: 62514
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 15
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)