BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9980
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 17 AHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
+H + AGAV ++LVV++ + + WK PGG E EDIG+ AVREVFEET I++
Sbjct: 24 SHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKS 83
Query: 77 EFHSVVAFR--HTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
EF SV++ R HT+ AFG SD+Y I RLKP + I E +WMD
Sbjct: 84 EFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMD 133
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
+GAG VV N K +VL++++ + W P G+ E E + EAAVREV+EET +R E
Sbjct: 3 LGAGGVVFNAKREVLLLRD---RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
+GAG VV N K +VL++++ + W P G+ E E + EAAVREV+E+T +R E
Sbjct: 3 LGAGGVVFNAKREVLLLRD---RMGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 14 PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETN 73
PN+ + A+V+ + + ++V ++ + + W LPGG++E E I +A +RE+FEETN
Sbjct: 206 PNF----VTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETN 261
Query: 74 IR 75
I
Sbjct: 262 IN 263
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 25 AVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
AV L+++++VL+++E R+ R W LP G +E E I EA REV EE + E ++++
Sbjct: 25 AVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLS 84
Query: 84 FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDRE 116
G S + F+ +P T I K +E
Sbjct: 85 VEER-----GPSWVRFVFLARP-TGGILKTSKE 111
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 23 AGAVVLNDKNQVLVVKE-----FYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
AG V+LN++ +L+V+E K W +P G VE E+ +AAVRE EET +R
Sbjct: 16 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRV 74
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 25 AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
A V++ + + LVV+E + W P G++E E + EAA RE++EET I +
Sbjct: 9 ACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 31 KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH-- 88
++++L+V+E W LPGG+ ++ + + + V+EV EE + E VVA H
Sbjct: 80 EDKILLVQE---NDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKN 136
Query: 89 ---KAAFGCSDIYFIVRL 103
K+A + ++ + RL
Sbjct: 137 NPAKSAHRVTKVFILCRL 154
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 31 KNQVLVVKE-FYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT---EFHSVVAFRH 86
+N+VL+ K R +W LP G+ E +E + + A RE EE N R E ++V + H
Sbjct: 50 ENKVLLCKRAIAPYRGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYAVYSLPH 109
Query: 87 THKAAFGCSDIYFIVRLKPL 106
S +Y + R K L
Sbjct: 110 I-------SQVYXLFRAKLL 122
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
+G GA ++ D +L+ ++ + W LPGG V+ E + A RE+ EE I E +
Sbjct: 30 VGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERAT 89
Query: 81 VVAFRHTHKAAFG 93
++ AA G
Sbjct: 90 LLCVVDHIDAANG 102
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 48 KLPGGYVEMSEDIGEAAVREVFEETNIR 75
PGG+VE+ E AA+REVFEET +R
Sbjct: 40 SFPGGHVEVGEPCATAAIREVFEETGLR 67
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRP---QWKLPGGYVEMSEDIGEAAVREVFEETNI 74
+I A++ N+K + L+++ R +W LPGG V E + E REV+EET I
Sbjct: 8 IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI 65
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 31 KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84
+++VL+V R QW +PGG +E E+ G AAVREV+EE ++ + ++
Sbjct: 23 EDEVLLVSS-SRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLGI 75
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 15 NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
Y + AVV ++ ++L VKE + +W LPGG+ ++ E A +EVFEET
Sbjct: 63 GYQTPKVDIRAVVFQNE-KLLFVKE--KSDGKWALPGGWADVGYTPTEVAAKEVFEETGY 119
Query: 75 RTEFHSVVAF--RHTHKAAFGCSDIYFI 100
+ ++A + H+ + + +Y I
Sbjct: 120 EVDHFKLLAIFDKEKHQPSPSATHVYKI 147
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 15 NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
Y + AVV ++ ++L VKE + +W LPGG+ ++ E A +EVFEET
Sbjct: 63 GYQTPKVDIRAVVFQNE-KLLFVKE--KSDGKWALPGGWADVGYTPTEVAAKEVFEETGY 119
Query: 75 RTEFHSVVAF------------RHTHKAAFGCSDI 97
+ ++A H +K GC I
Sbjct: 120 EVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEII 154
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ--WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
AG V+ D +VL++K P W P G +E E E AVREV+EET ++ E
Sbjct: 7 AGGVLFKD-GEVLLIK-----TPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILD 60
Query: 81 VVAFRH 86
+ H
Sbjct: 61 YIGEIH 66
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 17 AHTMI---GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETN 73
H +I AV+ N++ ++L Y W LP G +E E EA +REV+EET
Sbjct: 15 GHELIFXPSVAAVIKNEQGELLFQ---YPGGEYWSLPAGAIEPGETPEEAVIREVWEETG 71
Query: 74 IRTE 77
++ +
Sbjct: 72 LKVQ 75
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol
Polyphosphate Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol
Polyphosphate Phosphohydrolase 3-Alpha
Length = 136
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 31 KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
+++VL+V R +W +PGG +E E+ G AAVREV+EE ++ + ++
Sbjct: 15 EDEVLLVSS-SRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGVKGKLGRLLG 66
>pdb|2QJO|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|C Chain C, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp
Length = 341
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 16 YAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR 75
YA T I AVV+ + ++V ++ LPGG+++ +E + E +RE+ EET ++
Sbjct: 199 YAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLK 258
Query: 76 T 76
Sbjct: 259 V 259
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 24 GAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEET 72
GA++L+ Q V+ + ++ W P G ++ E + A+REV+EET
Sbjct: 105 GAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEET 153
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 24 GAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEET 72
GA++L+ Q V+ + ++ W P G ++ E + A+REV+EET
Sbjct: 100 GAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEET 148
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 26 VVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
++ D +QVL++++ +R W PGG +E E I E RE +EET I
Sbjct: 9 CIVVDHDQVLLLQK--PRRGWWVAPGGKMEAGESILETVKREYWEETGI 55
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 47 WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH 86
+ PGG+VE E E+ +RE++EET + + +V ++
Sbjct: 38 YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKN 77
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 10 ESRIPNYAHTMIGAGAVVL-----NDKNQVLVV-KEFYRKRPQWKLPGGYVEMSEDIGEA 63
+ +P Y + V+L D+ +VL++ ++ + R W LPGG+V +E ++
Sbjct: 29 QQELPEYEKPSLTVDXVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDS 88
Query: 64 AVREVFEETNI 74
+RE EET +
Sbjct: 89 VLRETKEETGV 99
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 22 GAGAVV---LNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
AG V+ L K + L+++ Y W P G+V+ ED +AA+RE EE NI E
Sbjct: 5 AAGLVIYRKLAGKIEFLLLQASYPPH-HWTPPKGHVDPGEDEWQAAIRETKEEANITKE 62
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 11 SRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ-------WKLPGGYVEMSEDIGEA 63
+P + +I +L+ N+VL+ + RP+ W+ PGG VE E +
Sbjct: 20 GSMPIKSSLLIVVACALLDQDNRVLLTQ-----RPEGKSLAGLWEFPGGKVEQGETPEAS 74
Query: 64 AVREVFEETNIRTEFHSVVAF---RHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITES 120
+RE+ EE + + ++ H ++ +YF K + Q RE
Sbjct: 75 LIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQ-----GREGQNL 129
Query: 121 KWM 123
KW+
Sbjct: 130 KWI 132
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
G V+ N + QV+ + F + W+ P G + E +A RE+FEE +
Sbjct: 11 VGIVICNRQGQVMWARRFGQH--SWQFPQGGINPGESAEQAMYRELFEEVGL 60
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV-VAFRHTH 88
QW+ PGG +E E EA RE+ EE I E + +A H++
Sbjct: 49 QWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSY 92
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84
+VL+V R +W +PGG +E E+ AAVREV EE ++ +V
Sbjct: 55 EVLLVSS-SRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGI 105
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEETNI 74
+W +PGG+V+ +E +AA RE+ EET++
Sbjct: 68 KWAVPGGFVDENESAEQAAERELEEETSL 96
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal
Complex, Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
Length = 129
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQWKL--PGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
A ++ N+ N++ + + KL PGG +EM E +A VRE+ EE I + S
Sbjct: 7 AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFS 66
Query: 81 V 81
+
Sbjct: 67 L 67
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 27 VLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
VL + +VL+VK +++ + PGG+VE +E EA RE EET I E
Sbjct: 7 VLVENGKVLLVK--HKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 25 AVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETN 73
A V+ ++ L+V+E R + P G++E E I +A REV EET
Sbjct: 12 AAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETG 61
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 24 GAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
G V+ N + QV+ + F + W+ P G + E +A R +FEE +
Sbjct: 12 GIVICNRQGQVMWARRF--GQHSWQFPQGGINPGESAEQAMYRALFEEVGL 60
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV 101
++ LPGG E +A +RE+ EET +R + + + H F +Y +
Sbjct: 38 RYNLPGGKANRGELRSQALIREIREETGLRI---NSMLYLFDHITPFNAHKVYLCI 90
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 47 WKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
W++P G ++ ED AA+RE+ EET + +
Sbjct: 40 WQMPQGGIDEGEDPRNAAIRELREETGVTS 69
>pdb|2FB1|A Chain A, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|B Chain B, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|C Chain C, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|D Chain D, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
Length = 226
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 34 VLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG 93
+L+ + F +W L GG+V+ E + +AA R + E T + + V AFG
Sbjct: 31 LLLKRNFEPAXGEWSLXGGFVQKDESVDDAAKRVLAELTGLENVYXEQV-------GAFG 83
Query: 94 CSD 96
D
Sbjct: 84 AID 86
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
A AV+ + ++L V++ RP ++P G +E ED EAA RE+ EET + +
Sbjct: 36 AVAVIALREGRMLFVRQM---RPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLSGD 92
Query: 78 FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWM 123
+ ++ + + ++ LK + E D+ E E WM
Sbjct: 93 LTYLFSYFVSPGFTDEKTHVFLAENLKEV--EAHPDEDEAIEVVWM 136
>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
pdb|3N77|B Chain B, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
Length = 144
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEE 71
QW L GG VE E I EA RE+ EE
Sbjct: 35 QWALSGGGVEPGERIEEALRREIREE 60
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 49 LPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA-----FRHTHKAAFGCSDIYFIV 101
LPGG +E +E EA REV EE I E + F H+ + YF V
Sbjct: 45 LPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYV 102
>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
pdb|3OGA|B Chain B, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
Length = 165
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEE 71
QW L GG VE E I EA RE+ EE
Sbjct: 56 QWALSGGGVEPGERIEEALRREIREE 81
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQ--WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
++ A +++ +VL+ + K W+ PGG +E E A VRE+ EE + T
Sbjct: 8 LLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTR 67
Query: 78 FHSVVAF 84
+
Sbjct: 68 ASCLAPL 74
>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
Length = 140
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF-HSVVAFRHTH 88
+++ PGG VE E + EA RE+ EE + E ++ HT+
Sbjct: 35 RYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTY 78
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
A AV+ + ++L V++ RP ++P G +E ED EAA RE+ E+T + +
Sbjct: 36 AVAVIALREGRMLFVRQM---RPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGD 92
Query: 78 FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWM 123
+ ++ + + ++ LK + E D+ E E WM
Sbjct: 93 LTYLFSYFVSPGFTDEKTHVFLAENLKEV--EAHPDEDEAIEVVWM 136
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
A AV+ + ++L V++ RP ++P G +E ED EAA R++ EET + +
Sbjct: 36 AVAVIALREGRMLFVRQM---RPAVGLAPLEIPAGLIEPGEDPLEAARRQLAEETGLSGD 92
Query: 78 FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWM 123
+ ++ + + ++ LK + E D+ E E WM
Sbjct: 93 LTYLFSYFVSPGFTDEKTHVFLAENLKEV--EAHPDEDEAIEVVWM 136
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEETNI 74
W P G+VE ED E A+RE EE I
Sbjct: 37 HWTPPKGHVEPGEDDLETALRETQEEAGI 65
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 52 GYVEMSEDIGEAAVREVFEETN 73
G VE ED+G AA RE+ EE
Sbjct: 39 GGVEKGEDLGAAAARELLEEVG 60
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 47 WKLPGGYVEMSEDIGEAAVREVFEETN 73
W P G +E +E AAVRE+ EET
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|3F6A|A Chain A, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
pdb|3F6A|B Chain B, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
Length = 159
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 31 KNQVLVVKEFYRKRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSVV 82
K++VL+ K+ + LP GG++E++E EA +RE EE + ++ +
Sbjct: 16 KDKVLL---HLHKKAKKXLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI 65
>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From
Escherichia Coli K12 At 2.20 A Resolution
Length = 269
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 51 GGYVEMSEDIGEAAVREVFEETNIRTE 77
G+VE+ E + +A REV EE+ I+ +
Sbjct: 170 AGFVEVGETLEQAVAREVXEESGIKVK 196
>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
pdb|2GB5|B Chain B, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
Length = 269
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 51 GGYVEMSEDIGEAAVREVFEETNIRTE 77
G+VE+ E + +A REV EE+ I+ +
Sbjct: 170 AGFVEVGETLEQAVAREVXEESGIKVK 196
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 47 WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
W+ GG VE E +A VRE+ EE I VA
Sbjct: 37 WEFAGGKVEPDESQRQALVRELREELGIEATVGEYVA 73
>pdb|3ID9|A Chain A, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
pdb|3ID9|B Chain B, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
Length = 171
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 VLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
+L + +VL+VK+ R W LPGG VE E +
Sbjct: 29 ILIEDEKVLLVKQKVANR-DWSLPGGRVENGETL 61
>pdb|2V29|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant K15w)
pdb|2V29|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
(Mutant K15w)
Length = 274
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 47 WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSD 96
W +PG +++IG+A +E+ + + + FH V T FG D
Sbjct: 185 WMVPG-----TDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLID 229
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 1 MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
MT WLPD+ RI + A + D L + ++R L GY ++E I
Sbjct: 32 MTDWLPDELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAI 91
>pdb|1GT7|A Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|B Chain B, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|C Chain C, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|D Chain D, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|E Chain E, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|F Chain F, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|G Chain G, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|H Chain H, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|I Chain I, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|J Chain J, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|K Chain K, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|L Chain L, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|M Chain M, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|N Chain N, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|O Chain O, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|P Chain P, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|Q Chain Q, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|R Chain R, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|S Chain S, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
pdb|1GT7|T Chain T, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli
Length = 274
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 47 WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSD 96
W +PG +++IG+A +E+ + + + FH V T FG D
Sbjct: 185 WMVPG-----TDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLID 229
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 1 MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
MT WLPD+ RI + A + D L + ++R L GY ++E I
Sbjct: 32 MTDWLPDELRERIRKEEERGVSGAAALFLDAVLQLEARGWFRGMLDAMLAAGYTGLAEAI 91
>pdb|1I8N|A Chain A, Crystal Structure Of Leech Anti-Platelet Protein
pdb|1I8N|B Chain B, Crystal Structure Of Leech Anti-Platelet Protein
pdb|1I8N|C Chain C, Crystal Structure Of Leech Anti-Platelet Protein
Length = 126
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 38 KEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR 75
++ + KRP WKLP + +E R++ EE+ +
Sbjct: 44 EDCWSKRPGWKLPDNLLTKTEFTSVDECRKMCEESAVE 81
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEETNI 74
W P G+VE ED E A+R EE I
Sbjct: 42 HWTPPKGHVEPGEDDLETALRATQEEAGI 70
>pdb|1Q33|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt9
pdb|1QVJ|A Chain A, Structure Of Nudt9 Complexed With Ribose-5-Phosphate
Length = 292
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 1 MTKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDI 60
+T+W D S ++I H + +G +L Q + +K + +W +PGG V+ E I
Sbjct: 117 ITRWKRDSSGNKI---XHPV--SGKHIL----QFVAIKR--KDCGEWAIPGGXVDPGEKI 165
Query: 61 GEAAVREVFEET 72
RE EE
Sbjct: 166 SATLKREFGEEA 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,844,905
Number of Sequences: 62578
Number of extensions: 136466
Number of successful extensions: 433
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 62
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)