Query psy9980
Match_columns 124
No_of_seqs 119 out of 1249
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 00:36:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04679 Nudix_Hydrolase_20 Mem 99.9 9.4E-25 2E-29 133.5 12.6 106 19-124 1-108 (125)
2 cd03430 GDPMH GDP-mannose glyc 99.9 3.9E-24 8.4E-29 133.8 12.4 108 17-124 9-125 (144)
3 PRK15434 GDP-mannose mannosyl 99.9 4.1E-24 9E-29 135.2 12.0 109 16-124 13-130 (159)
4 cd04670 Nudix_Hydrolase_12 Mem 99.9 1E-23 2.2E-28 129.2 12.2 105 20-124 2-106 (127)
5 cd04678 Nudix_Hydrolase_19 Mem 99.9 2.4E-23 5.1E-28 127.8 12.0 106 19-124 1-110 (129)
6 cd04700 DR1025_like DR1025 fro 99.9 1.6E-22 3.5E-27 126.2 12.4 110 14-124 7-118 (142)
7 PLN02325 nudix hydrolase 99.9 1.9E-22 4.2E-27 126.1 12.5 108 16-124 5-118 (144)
8 COG1051 ADP-ribose pyrophospha 99.9 1E-22 2.3E-27 127.2 11.2 108 16-124 6-115 (145)
9 cd04696 Nudix_Hydrolase_37 Mem 99.9 3.1E-22 6.8E-27 122.3 12.0 103 20-124 2-107 (125)
10 cd04684 Nudix_Hydrolase_25 Con 99.9 1.7E-22 3.7E-27 123.6 10.7 102 22-124 2-110 (128)
11 cd04680 Nudix_Hydrolase_21 Mem 99.9 4.1E-22 9E-27 120.7 11.5 99 22-124 2-101 (120)
12 cd04681 Nudix_Hydrolase_22 Mem 99.9 4.7E-22 1E-26 122.2 11.5 104 21-124 2-108 (130)
13 cd04673 Nudix_Hydrolase_15 Mem 99.9 3.6E-22 7.8E-27 121.3 10.8 101 22-124 2-107 (122)
14 cd04683 Nudix_Hydrolase_24 Mem 99.9 6.1E-22 1.3E-26 120.1 11.4 101 22-124 2-107 (120)
15 cd03674 Nudix_Hydrolase_1 Memb 99.9 1.1E-21 2.4E-26 121.9 12.1 103 20-124 2-116 (138)
16 cd04511 Nudix_Hydrolase_4 Memb 99.9 1.5E-21 3.2E-26 120.1 12.1 109 10-124 3-112 (130)
17 PRK15472 nucleoside triphospha 99.9 8.2E-22 1.8E-26 122.8 10.9 102 22-124 5-118 (141)
18 cd04671 Nudix_Hydrolase_13 Mem 99.9 1.2E-21 2.6E-26 119.5 11.3 98 22-124 2-103 (123)
19 cd04693 Nudix_Hydrolase_34 Mem 99.9 7.5E-22 1.6E-26 120.9 10.1 101 22-124 2-106 (127)
20 cd03675 Nudix_Hydrolase_2 Cont 99.9 1.9E-21 4.1E-26 120.1 11.6 102 22-124 2-104 (134)
21 cd03427 MTH1 MutT homolog-1 (M 99.9 2.1E-21 4.5E-26 120.3 11.6 101 22-124 3-104 (137)
22 cd04682 Nudix_Hydrolase_23 Mem 99.9 1.6E-21 3.5E-26 118.7 10.9 99 23-124 4-107 (122)
23 PRK09438 nudB dihydroneopterin 99.9 1.5E-21 3.3E-26 122.5 10.9 58 19-77 6-63 (148)
24 cd03673 Ap6A_hydrolase Diadeno 99.9 1.4E-21 3E-26 120.0 10.5 102 21-124 2-109 (131)
25 cd04677 Nudix_Hydrolase_18 Mem 99.9 1.9E-21 4.2E-26 119.6 11.2 105 18-124 5-115 (132)
26 cd04672 Nudix_Hydrolase_14 Mem 99.9 2.1E-21 4.6E-26 118.3 11.1 102 19-124 1-105 (123)
27 cd04664 Nudix_Hydrolase_7 Memb 99.9 1.9E-21 4.2E-26 119.4 11.0 103 22-124 3-111 (129)
28 cd03429 NADH_pyrophosphatase N 99.9 1E-21 2.3E-26 121.0 9.8 99 22-124 2-100 (131)
29 cd03424 ADPRase_NUDT5 ADP-ribo 99.9 2.3E-21 4.9E-26 120.1 11.3 103 20-124 2-108 (137)
30 cd03426 CoAse Coenzyme A pyrop 99.9 1.5E-21 3.3E-26 123.7 10.7 103 21-124 3-111 (157)
31 cd04669 Nudix_Hydrolase_11 Mem 99.9 2.3E-21 4.9E-26 118.0 10.7 65 22-86 2-66 (121)
32 cd04687 Nudix_Hydrolase_28 Mem 99.9 4.5E-21 9.9E-26 117.6 11.7 103 21-124 2-114 (128)
33 cd04697 Nudix_Hydrolase_38 Mem 99.9 3.4E-21 7.4E-26 117.9 10.9 100 22-124 2-105 (126)
34 cd03671 Ap4A_hydrolase_plant_l 99.9 4.6E-21 1E-25 120.2 11.3 105 19-124 2-124 (147)
35 PRK00241 nudC NADH pyrophospha 99.9 2.4E-21 5.1E-26 131.0 10.5 113 7-124 119-231 (256)
36 cd04676 Nudix_Hydrolase_17 Mem 99.9 4.5E-21 9.7E-26 117.2 10.8 103 20-124 2-110 (129)
37 cd04699 Nudix_Hydrolase_39 Mem 99.9 4.8E-21 1E-25 117.3 10.5 103 21-124 2-107 (129)
38 cd04691 Nudix_Hydrolase_32 Mem 99.9 1.2E-20 2.6E-25 114.2 11.8 96 23-124 3-101 (117)
39 PRK00714 RNA pyrophosphohydrol 99.9 1.5E-20 3.4E-25 118.9 12.3 107 17-124 5-128 (156)
40 cd03672 Dcp2p mRNA decapping e 99.9 5.2E-21 1.1E-25 119.7 9.8 55 22-78 3-58 (145)
41 cd04692 Nudix_Hydrolase_33 Mem 99.9 6.7E-21 1.5E-25 119.1 10.1 105 20-124 2-120 (144)
42 cd04689 Nudix_Hydrolase_30 Mem 99.9 1.7E-20 3.7E-25 114.6 11.6 101 21-124 2-107 (125)
43 cd04688 Nudix_Hydrolase_29 Mem 99.9 1.5E-20 3.1E-25 115.0 11.3 100 22-124 3-111 (126)
44 cd04690 Nudix_Hydrolase_31 Mem 99.9 2E-20 4.3E-25 113.1 11.8 99 22-124 2-103 (118)
45 PF00293 NUDIX: NUDIX domain; 99.9 5.2E-21 1.1E-25 117.5 9.3 106 19-124 1-112 (134)
46 cd04695 Nudix_Hydrolase_36 Mem 99.9 1.5E-20 3.3E-25 115.8 10.5 96 29-124 11-107 (131)
47 cd02885 IPP_Isomerase Isopente 99.8 2.2E-20 4.7E-25 119.2 11.0 104 20-124 30-141 (165)
48 cd04694 Nudix_Hydrolase_35 Mem 99.8 4.5E-20 9.8E-25 115.1 11.6 104 21-124 2-124 (143)
49 PRK15393 NUDIX hydrolase YfcD; 99.8 4.1E-20 8.9E-25 119.4 11.1 103 19-124 36-142 (180)
50 cd04666 Nudix_Hydrolase_9 Memb 99.8 1E-19 2.2E-24 110.9 10.7 100 23-124 3-108 (122)
51 cd03428 Ap4A_hydrolase_human_l 99.8 6.3E-20 1.4E-24 112.6 9.5 100 21-124 3-108 (130)
52 TIGR02150 IPP_isom_1 isopenten 99.8 1.1E-19 2.5E-24 115.2 10.8 105 17-124 24-135 (158)
53 PRK03759 isopentenyl-diphospha 99.8 1.3E-19 2.8E-24 117.5 10.8 106 18-124 32-145 (184)
54 cd04667 Nudix_Hydrolase_10 Mem 99.8 2.4E-19 5.1E-24 107.6 10.8 92 23-124 3-94 (112)
55 PRK10546 pyrimidine (deoxy)nuc 99.8 3.5E-19 7.6E-24 110.0 11.5 97 23-124 7-105 (135)
56 PRK10776 nucleoside triphospha 99.8 4.5E-19 9.7E-24 108.4 11.9 65 20-84 4-70 (129)
57 cd02883 Nudix_Hydrolase Nudix 99.8 6.4E-19 1.4E-23 106.2 11.9 103 22-124 2-105 (123)
58 cd04686 Nudix_Hydrolase_27 Mem 99.8 5.9E-19 1.3E-23 108.7 11.3 61 22-85 2-63 (131)
59 cd04661 MRP_L46 Mitochondrial 99.8 2.8E-19 6E-24 110.3 8.8 92 31-124 12-113 (132)
60 COG2816 NPY1 NTP pyrophosphohy 99.8 8.9E-20 1.9E-24 122.6 6.9 116 4-124 128-243 (279)
61 TIGR00586 mutt mutator mutT pr 99.8 1.6E-18 3.4E-23 106.1 11.9 65 20-84 4-70 (128)
62 PRK05379 bifunctional nicotina 99.8 6.3E-19 1.4E-23 123.7 10.9 108 16-124 199-315 (340)
63 PRK11762 nudE adenosine nucleo 99.8 2.6E-18 5.6E-23 111.5 12.3 101 22-124 49-152 (185)
64 cd03425 MutT_pyrophosphohydrol 99.8 3.8E-18 8.2E-23 103.4 11.1 99 22-124 3-103 (124)
65 cd04685 Nudix_Hydrolase_26 Mem 99.8 3.8E-18 8.3E-23 105.3 11.2 61 22-82 2-66 (133)
66 cd04674 Nudix_Hydrolase_16 Mem 99.8 8.3E-18 1.8E-22 101.6 11.9 99 22-123 6-107 (118)
67 cd04662 Nudix_Hydrolase_5 Memb 99.8 5.6E-18 1.2E-22 102.9 11.2 101 22-124 2-125 (126)
68 PRK10707 putative NUDIX hydrol 99.8 6.3E-18 1.4E-22 109.9 11.6 104 20-124 30-139 (190)
69 cd04665 Nudix_Hydrolase_8 Memb 99.8 6.3E-18 1.4E-22 102.2 10.9 97 22-124 2-98 (118)
70 cd03676 Nudix_hydrolase_3 Memb 99.8 2.5E-17 5.3E-22 106.5 11.4 108 17-124 29-151 (180)
71 PLN02709 nudix hydrolase 99.7 1.1E-16 2.4E-21 105.5 10.5 91 33-124 52-148 (222)
72 KOG3084|consensus 99.7 2.8E-18 6.2E-23 116.1 2.9 109 13-124 180-291 (345)
73 PRK10729 nudF ADP-ribose pyrop 99.7 3.3E-16 7.2E-21 102.7 11.1 63 21-83 50-120 (202)
74 TIGR00052 nudix-type nucleosid 99.7 2.3E-16 5E-21 102.3 10.2 65 20-84 44-116 (185)
75 PRK08999 hypothetical protein; 99.7 3.8E-16 8.3E-21 108.7 11.7 101 20-124 5-107 (312)
76 PLN02552 isopentenyl-diphospha 99.7 1.1E-15 2.5E-20 102.5 11.3 108 17-124 53-196 (247)
77 cd04663 Nudix_Hydrolase_6 Memb 99.7 1.5E-15 3.3E-20 92.5 10.3 51 23-76 3-55 (126)
78 PLN02791 Nudix hydrolase homol 99.7 1.5E-15 3.3E-20 114.8 11.0 108 17-124 29-151 (770)
79 TIGR02705 nudix_YtkD nucleosid 99.7 3.2E-15 7E-20 94.1 10.7 61 22-86 26-86 (156)
80 PRK15009 GDP-mannose pyrophosp 99.6 4.4E-15 9.4E-20 96.7 11.2 105 19-124 44-159 (191)
81 KOG0648|consensus 99.6 2.1E-15 4.5E-20 102.1 5.0 122 2-124 98-224 (295)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 6.3E-14 1.4E-18 90.5 10.4 42 33-76 50-91 (186)
83 PLN03143 nudix hydrolase; Prov 99.6 6.8E-14 1.5E-18 95.8 10.3 58 22-79 130-193 (291)
84 COG0494 MutT NTP pyrophosphohy 99.5 9E-14 1.9E-18 86.1 9.5 63 22-85 13-79 (161)
85 COG1443 Idi Isopentenyldiphosp 99.5 7.7E-14 1.7E-18 87.6 6.2 105 19-124 32-146 (185)
86 KOG2839|consensus 99.5 1.1E-13 2.3E-18 84.6 6.6 66 19-85 8-76 (145)
87 KOG3069|consensus 99.3 1.8E-11 3.9E-16 80.4 7.5 92 33-124 59-156 (246)
88 cd03431 DNA_Glycosylase_C DNA 99.3 9.4E-11 2E-15 70.4 9.3 53 21-74 4-58 (118)
89 KOG3041|consensus 99.2 2.8E-10 6E-15 73.0 10.2 57 21-77 76-135 (225)
90 PLN02839 nudix hydrolase 98.9 1.4E-08 3.1E-13 71.4 9.4 95 30-124 216-320 (372)
91 PF14815 NUDIX_4: NUDIX domain 98.8 1.1E-08 2.4E-13 61.4 5.6 54 25-79 2-57 (114)
92 COG4119 Predicted NTP pyrophos 98.7 3.8E-08 8.2E-13 59.1 4.7 58 20-77 3-68 (161)
93 COG4112 Predicted phosphoester 98.2 1.7E-05 3.6E-10 49.9 8.1 101 22-123 63-179 (203)
94 KOG4195|consensus 98.2 3.3E-06 7.2E-11 55.5 4.5 39 33-73 140-178 (275)
95 KOG0142|consensus 98.1 9.6E-06 2.1E-10 52.6 4.9 106 18-124 50-176 (225)
96 KOG2937|consensus 97.6 8.9E-06 1.9E-10 56.4 -1.0 57 19-77 81-138 (348)
97 PF13869 NUDIX_2: Nucleotide h 97.5 0.0006 1.3E-08 44.2 6.1 41 33-76 59-99 (188)
98 PRK10880 adenine DNA glycosyla 96.9 0.0028 6.1E-08 45.2 5.8 48 21-75 231-280 (350)
99 KOG4313|consensus 96.9 0.0024 5.2E-08 43.1 4.8 55 23-77 136-197 (306)
100 KOG4432|consensus 96.7 0.0029 6.4E-08 43.8 4.2 70 17-86 23-120 (405)
101 KOG1689|consensus 96.5 0.0087 1.9E-07 38.2 5.0 39 33-74 85-123 (221)
102 TIGR01084 mutY A/G-specific ad 96.2 0.023 5E-07 39.4 6.1 30 23-52 230-261 (275)
103 KOG4548|consensus 96.1 0.039 8.5E-07 37.4 6.5 45 32-76 139-184 (263)
104 KOG4432|consensus 95.3 0.17 3.6E-06 35.4 7.5 32 49-80 288-319 (405)
105 PRK13910 DNA glycosylase MutY; 94.9 0.055 1.2E-06 37.8 4.4 31 21-52 187-218 (289)
106 PF14443 DBC1: DBC1 93.8 0.6 1.3E-05 28.5 6.6 45 33-77 9-59 (126)
107 COG1194 MutY A/G-specific DNA 92.8 0.35 7.6E-06 34.5 5.1 42 15-56 230-273 (342)
108 PF03487 IL13: Interleukin-13; 88.7 0.49 1.1E-05 22.7 1.9 23 51-73 15-37 (43)
109 KOG2937|consensus 81.5 0.64 1.4E-05 33.0 0.7 67 11-77 229-296 (348)
110 PF12860 PAS_7: PAS fold 71.0 2.5 5.5E-05 24.7 1.2 44 21-66 4-47 (115)
111 COG4111 Uncharacterized conser 68.2 38 0.00082 23.6 6.5 72 25-102 30-103 (322)
112 PF07026 DUF1317: Protein of u 60.8 9.4 0.0002 20.0 1.9 16 43-58 20-35 (60)
113 PF01491 Frataxin_Cyay: Fratax 60.2 34 0.00073 20.3 5.0 54 23-77 40-107 (109)
114 PF09505 Dimeth_Pyl: Dimethyla 57.5 6.1 0.00013 28.4 1.2 24 53-76 408-431 (466)
115 PF03621 MbtH: MbtH-like prote 55.3 11 0.00023 19.5 1.6 26 43-68 26-52 (54)
116 PF08918 PhoQ_Sensor: PhoQ Sen 48.6 6.9 0.00015 25.2 0.3 39 3-41 55-93 (180)
117 PF13014 KH_3: KH domain 46.2 14 0.0003 17.6 1.1 17 64-80 12-28 (43)
118 COG4009 Uncharacterized protei 45.0 32 0.00069 19.4 2.5 45 28-78 34-78 (88)
119 PF14044 NETI: NETI protein 42.3 24 0.00052 18.4 1.7 22 53-76 3-24 (57)
120 COG0828 RpsU Ribosomal protein 41.0 30 0.00064 18.8 2.0 18 49-66 1-18 (67)
121 smart00250 PLEC Plectin repeat 40.7 22 0.00047 16.6 1.3 19 50-68 10-32 (38)
122 PRK00446 cyaY frataxin-like pr 40.3 79 0.0017 18.7 5.5 22 56-77 82-103 (105)
123 COG3251 Uncharacterized protei 37.9 71 0.0015 17.4 3.7 27 43-69 26-53 (71)
124 PF11212 DUF2999: Protein of u 36.5 32 0.0007 18.9 1.7 15 63-77 58-72 (82)
125 PF15632 ATPgrasp_Ter: ATP-gra 36.1 1.5E+02 0.0032 21.5 5.4 56 13-77 203-259 (329)
126 COG0353 RecR Recombinational D 35.6 11 0.00024 25.0 -0.2 66 7-73 65-132 (198)
127 cd02393 PNPase_KH Polynucleoti 33.3 28 0.00062 18.1 1.2 15 64-78 23-37 (61)
128 TIGR03421 FeS_CyaY iron donor 30.9 1.2E+02 0.0025 17.8 5.7 22 56-77 80-101 (102)
129 TIGR03843 conserved hypothetic 30.9 1.9E+02 0.004 20.2 6.2 36 43-82 41-76 (253)
130 cd01813 UBP_N UBP ubiquitin pr 30.6 96 0.0021 16.8 3.2 30 53-83 15-44 (74)
131 PRK07198 hypothetical protein; 28.9 1.1E+02 0.0024 22.9 3.8 43 29-74 159-201 (418)
132 PHA03069 DNA-binding protein; 27.6 83 0.0018 18.9 2.5 22 18-39 11-33 (119)
133 cd00503 Frataxin Frataxin is a 26.9 1.4E+02 0.0031 17.5 5.8 55 22-76 37-103 (105)
134 KOG3904|consensus 26.5 33 0.00072 22.9 0.8 18 58-75 23-40 (209)
135 COG0554 GlpK Glycerol kinase [ 26.1 1.2E+02 0.0026 23.3 3.7 60 21-83 15-79 (499)
136 COG3851 UhpB Signal transducti 25.6 21 0.00046 26.3 -0.2 25 54-78 296-320 (497)
137 PRK00270 rpsU 30S ribosomal pr 24.7 82 0.0018 16.8 2.0 17 50-66 2-18 (64)
138 PF03068 PAD: Protein-arginine 24.1 46 0.00099 24.6 1.2 28 50-77 323-350 (385)
139 cd09232 Snurportin-1_C C-termi 23.8 40 0.00086 22.1 0.8 41 24-65 34-79 (186)
140 PF07494 Reg_prop: Two compone 22.4 78 0.0017 12.9 2.7 17 22-38 6-22 (24)
141 PRK01381 Trp operon repressor; 22.4 63 0.0014 19.0 1.4 14 64-77 57-70 (99)
142 PRK07539 NADH dehydrogenase su 22.3 41 0.0009 21.2 0.7 39 63-101 41-80 (154)
143 PRK13844 recombination protein 22.2 28 0.0006 23.2 -0.1 52 21-73 82-135 (200)
144 TIGR01958 nuoE_fam NADH-quinon 22.2 48 0.001 20.7 0.9 23 63-85 35-58 (148)
145 PF08398 Parvo_coat_N: Parvovi 21.9 89 0.0019 16.8 1.8 26 47-72 6-33 (64)
146 PF13680 DUF4152: Protein of u 21.8 66 0.0014 21.0 1.5 16 62-77 117-132 (227)
147 PF11869 DUF3389: Protein of u 21.4 75 0.0016 17.6 1.5 12 65-76 63-74 (75)
148 TIGR00615 recR recombination p 21.2 34 0.00073 22.7 0.1 65 8-73 65-131 (195)
149 PF13152 DUF3967: Protein of u 20.9 67 0.0015 14.9 1.1 12 61-72 9-20 (34)
150 KOG0648|consensus 20.8 55 0.0012 23.2 1.1 47 29-77 39-86 (295)
151 TIGR00030 S21p ribosomal prote 20.6 1.1E+02 0.0025 15.9 2.0 14 53-66 4-17 (58)
152 KOG0643|consensus 20.1 1.1E+02 0.0025 21.6 2.5 54 2-56 35-88 (327)
No 1
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.93 E-value=9.4e-25 Score=133.45 Aligned_cols=106 Identities=23% Similarity=0.375 Sum_probs=79.7
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
++++++++++++++++||++|... .++.|.+|||++++||++++||+||++||||+++....++..............+
T Consensus 1 ~~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04679 1 PRVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWV 80 (125)
T ss_pred CceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEE
Confidence 467899999998889999999643 6799999999999999999999999999999999877777765443322233334
Q ss_pred EEEEEeccCCccCC-CCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEIT-KDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~-~~~~e~~~~~W~~ 124 (124)
.++|.+....+... ..++|+.+++|++
T Consensus 81 ~~~f~~~~~~~~~~~~~~~E~~~~~W~~ 108 (125)
T cd04679 81 APVYLAENFSGEPRLMEPDKLLELGWFA 108 (125)
T ss_pred EEEEEEeecCCccccCCCccccEEEEeC
Confidence 44454444333332 3456889999986
No 2
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.92 E-value=3.9e-24 Score=133.77 Aligned_cols=108 Identities=20% Similarity=0.307 Sum_probs=79.7
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEeecccC---
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRHTHKA--- 90 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~~~~~--- 90 (124)
..+.+++.++|++.+|++||+||+.. .+|.|.+|||+++.|||+++||+||++||||+++... +++........
T Consensus 9 ~~p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~ 88 (144)
T cd03430 9 NTPLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF 88 (144)
T ss_pred CCCeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence 45577899999998889999999654 6899999999999999999999999999999998765 66555432211
Q ss_pred ---CcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 91 ---AFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 91 ---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....+.+.++|.+....+.....++|+.+++|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 125 (144)
T cd03430 89 FGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLT 125 (144)
T ss_pred ccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEec
Confidence 1111234444444444444445678899999985
No 3
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.92 E-value=4.1e-24 Score=135.21 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=80.0
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc--cceeEEEeecccC-C
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE--FHSVVAFRHTHKA-A 91 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~~~~-~ 91 (124)
...+.+++.++|.++++++||.||+++ .+|.|+||||++++|||+++||+||++||||+.+. ...++.+...... .
T Consensus 13 ~~~~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 92 (159)
T PRK15434 13 RSTPLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDN 92 (159)
T ss_pred cCCceEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccc
Confidence 345567899999988789999999755 67999999999999999999999999999999874 3355554322211 1
Q ss_pred ---c--CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 92 ---F--GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 92 ---~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
. ..+.+.++|.+....+.+...++|+.+++|++
T Consensus 93 ~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~ 130 (159)
T PRK15434 93 FSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLT 130 (159)
T ss_pred cCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEe
Confidence 1 12334455555555555555667899999985
No 4
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.92 E-value=1e-23 Score=129.16 Aligned_cols=105 Identities=58% Similarity=0.929 Sum_probs=77.9
Q ss_pred eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF 99 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (124)
.++++++++++++++||++|+..+++.|.+|||++++|||+++||.||++||||+++....++..............+++
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYF 81 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEE
Confidence 46788899998789999988644679999999999999999999999999999999876666655433333333334544
Q ss_pred EEEeccCCccCCCCcccccceeecC
Q psy9980 100 IVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 100 ~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
++.+......+...++|+.+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~E~~~~~w~~ 106 (127)
T cd04670 82 ICRLKPLSFDINFDTSEIAAAKWMP 106 (127)
T ss_pred EEEEccCcCcCCCChhhhheeEEEc
Confidence 5544333333445677888999986
No 5
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.91 E-value=2.4e-23 Score=127.84 Aligned_cols=106 Identities=28% Similarity=0.407 Sum_probs=78.2
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
+++++.++++++++++||++|..+ .++.|.+|||++++|||+++||.||++||||+++.....+............+.+
T Consensus 1 p~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04678 1 PRVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYV 80 (129)
T ss_pred CceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEE
Confidence 467899999998889999999654 6899999999999999999999999999999998876666554333222233334
Q ss_pred EEEEEeccCCccCCC---CcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITK---DDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~---~~~e~~~~~W~~ 124 (124)
.++|.+......... .++|+.+++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 110 (129)
T cd04678 81 TIFVKAEVDDGEAEPNKMEPEKCEGWEWFD 110 (129)
T ss_pred EEEEEEEeCCCCcccCCCCCceeCceEEeC
Confidence 444444443332222 456788899985
No 6
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.90 E-value=1.6e-22 Score=126.18 Aligned_cols=110 Identities=31% Similarity=0.363 Sum_probs=77.9
Q ss_pred CCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc
Q psy9980 14 PNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF 92 (124)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~ 92 (124)
...+....++++++++.++++||++|+.. .++.|++|||++++||++++||+||++||||+++....++...... ...
T Consensus 7 ~~~~~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~~~ 85 (142)
T cd04700 7 HHVEVEARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGR-FDD 85 (142)
T ss_pred cCcceeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEE-cCC
Confidence 34567778999999997789999988654 6799999999999999999999999999999998866655543211 112
Q ss_pred CcccEEEEEEeccCCccCC-CCcccccceeecC
Q psy9980 93 GCSDIYFIVRLKPLTQEIT-KDDREITESKWMD 124 (124)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~ 124 (124)
....+.++|.+........ ...+|+.++.|++
T Consensus 86 ~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~ 118 (142)
T cd04700 86 GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFS 118 (142)
T ss_pred CcEEEEEEEEEEecCCccccCCCCCEEEEEEEC
Confidence 2222333444433222211 2347889999986
No 7
>PLN02325 nudix hydrolase
Probab=99.90 E-value=1.9e-22 Score=126.07 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=77.5
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--c
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA--F 92 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~ 92 (124)
++.+++++.++++++ +++||+||+.. ..|.|.+|||+++.|||+++||+||++||||+++....++.+....... .
T Consensus 5 ~~~p~~~v~~vi~~~-~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~~ 83 (144)
T PLN02325 5 EPIPRVAVVVFLLKG-NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEPK 83 (144)
T ss_pred CCCCeEEEEEEEEcC-CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCCC
Confidence 456788888888887 69999999654 5789999999999999999999999999999999888777765432211 1
Q ss_pred CcccEEEEEEeccCCcc---CCCCcccccceeecC
Q psy9980 93 GCSDIYFIVRLKPLTQE---ITKDDREITESKWMD 124 (124)
Q Consensus 93 ~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~W~~ 124 (124)
..+.+.++|.+...... ....++++.+++|++
T Consensus 84 ~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~ 118 (144)
T PLN02325 84 PSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYE 118 (144)
T ss_pred CcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEC
Confidence 12223333333322221 123455678899985
No 8
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.90 E-value=1e-22 Score=127.24 Aligned_cols=108 Identities=26% Similarity=0.476 Sum_probs=80.7
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
+..+.+++.+++..+ +++||+||+.. ..|.|++|||+++.|||+++||+||++||||+++....++.++.........
T Consensus 6 ~~~p~~~v~~~i~~~-~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~ 84 (145)
T COG1051 6 YRTPLVAVGALIVRN-GRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRG 84 (145)
T ss_pred CCCcceeeeEEEEeC-CEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCce
Confidence 456777888888887 49999999766 7899999999999999999999999999999998888888887655444333
Q ss_pred ccEEEEEEeccCCccCCC-CcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEITK-DDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~ 124 (124)
+++.+++......+.+.. ..++...+.|++
T Consensus 85 ~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~ 115 (145)
T COG1051 85 HHVSFLFFAAEPEGELLAGDGDDAAEVGWFP 115 (145)
T ss_pred eEEEEEEEEEecCCCcccCChhhHhhcceec
Confidence 455555554443333333 334666676764
No 9
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=3.1e-22 Score=122.31 Aligned_cols=103 Identities=25% Similarity=0.371 Sum_probs=73.2
Q ss_pred eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc-c--CCcCccc
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH-K--AAFGCSD 96 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~-~--~~~~~~~ 96 (124)
.+++.+++++.++++||+||.. ++|.|++|||++++|||+++||+||++||||+++....+....... . .....+.
T Consensus 2 ~~~v~~~i~~~~~~iLL~r~~~-~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04696 2 LVTVGALIYAPDGRILLVRTTK-WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHF 80 (125)
T ss_pred ccEEEEEEECCCCCEEEEEccC-CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEE
Confidence 4578888899778999998753 5799999999999999999999999999999998866655442221 1 1111223
Q ss_pred EEEEEEeccCCccCCCCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
+++.|.+........ ..+|+.+++|++
T Consensus 81 ~~~~~~~~~~~~~~~-~~~e~~~~~W~~ 107 (125)
T cd04696 81 VLFDFFARTDGTEVT-PNEEIVEWEWVT 107 (125)
T ss_pred EEEEEEEEecCCccc-CCcccceeEEEC
Confidence 334444443333333 356889999986
No 10
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.89 E-value=1.7e-22 Score=123.57 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=74.0
Q ss_pred eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC----ccc
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG----CSD 96 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~----~~~ 96 (124)
++.++++++ +++||++|+.. .++.|.+|||++++||++++||+||++||||+++....++........... ...
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHH 80 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccE
Confidence 567778887 89999999654 679999999999999999999999999999999887666655433221111 133
Q ss_pred EEEEEEeccCCccC--CCCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEI--TKDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~e~~~~~W~~ 124 (124)
+.++|.+....... ....+|..++.|++
T Consensus 81 ~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~ 110 (128)
T cd04684 81 LCVFYDARVVGGALPVQEPGEDSHGAAWLP 110 (128)
T ss_pred EEEEEEEEEecCccccCCCCCCceeeEEEC
Confidence 44455554444332 34556788999986
No 11
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=4.1e-22 Score=120.73 Aligned_cols=99 Identities=34% Similarity=0.553 Sum_probs=75.5
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc-cceeEEEeecccCCcCcccEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE-FHSVVAFRHTHKAAFGCSDIYFI 100 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 100 (124)
++.++++++++++||++|+. .+.|.+|||++++|||+++||+||++||||+.+. ...++........ ......++
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~--~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~--~~~~~~~~ 77 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTY--GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSAS--GSWDHVIV 77 (120)
T ss_pred ceEEEEECCCCeEEEEEECC--CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCC--CCceEEEE
Confidence 57788899878999999864 3499999999999999999999999999999998 7776666543322 22344556
Q ss_pred EEeccCCccCCCCcccccceeecC
Q psy9980 101 VRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 101 ~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
|.+.........+++|+.+++|++
T Consensus 78 f~~~~~~~~~~~~~~E~~~~~w~~ 101 (120)
T cd04680 78 FRARADTQPVIRPSHEISEARFFP 101 (120)
T ss_pred EEecccCCCccCCcccEEEEEEEC
Confidence 666555444345667889999986
No 12
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=4.7e-22 Score=122.17 Aligned_cols=104 Identities=24% Similarity=0.343 Sum_probs=72.7
Q ss_pred eeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec-ccCCcC-cccE
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT-HKAAFG-CSDI 97 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~-~~~~~~-~~~~ 97 (124)
.++.+++.+.++++||++|... .+|.|++|||+++.|||+.+||+||+.||||+++....++..... +..... ...+
T Consensus 2 ~av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd04681 2 AAVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL 81 (130)
T ss_pred ceEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence 3677888888789999999644 678999999999999999999999999999999876555543321 111111 1122
Q ss_pred EEEEEeccCCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.++|.+..........++|+.+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 108 (130)
T cd04681 82 DLFFVCQVDDKPIVKAPDDVAELKWVV 108 (130)
T ss_pred EEEEEEEeCCCCCcCChHHhheeEEec
Confidence 223333333333344567889999986
No 13
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.89 E-value=3.6e-22 Score=121.26 Aligned_cols=101 Identities=25% Similarity=0.434 Sum_probs=72.6
Q ss_pred eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC----cCccc
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA----FGCSD 96 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~----~~~~~ 96 (124)
+++++++++ +++||++|... +++.|.+|||++++|||+++||.||++||||+++....++......... .....
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHY 80 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEE
Confidence 567777776 78999999654 6799999999999999999999999999999998766666554433221 11222
Q ss_pred EEEEEEeccCCccCCCCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.++.|.+....... ..++|+.+++|++
T Consensus 81 ~~~~~~~~~~~~~~-~~~~E~~~~~w~~ 107 (122)
T cd04673 81 VLIDFLCRYLGGEP-VAGDDALDARWVP 107 (122)
T ss_pred EEEEEEEEeCCCcc-cCCcccceeEEEC
Confidence 33444444444333 3457889999986
No 14
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=6.1e-22 Score=120.13 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=69.8
Q ss_pred eEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc--ceeEEEeecccCCcCcccE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF--HSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~~~~~~~~~~ 97 (124)
++++++.++ +++||+||... .+|.|++|||++++|||+++||+||+.||||+++.. ..++....... ......+
T Consensus 2 ~v~~vi~~~-~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~-~~~~~~~ 79 (120)
T cd04683 2 AVYVLLRRD-DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT-EDIESRI 79 (120)
T ss_pred cEEEEEEEC-CEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC-CCCceEE
Confidence 566777776 79999998543 579999999999999999999999999999998873 33444332221 1122334
Q ss_pred EEEEEeccCCccCC-CCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEIT-KDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~-~~~~e~~~~~W~~ 124 (124)
.++|.+....+.+. .+++|+.+++|++
T Consensus 80 ~~~f~~~~~~~~~~~~~~~e~~~~~W~~ 107 (120)
T cd04683 80 GLFFTVRRWSGEPRNCEPDKCAELRWFP 107 (120)
T ss_pred EEEEEEEeecCccccCCCCcEeeEEEEc
Confidence 44444443333332 3457888999986
No 15
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.88 E-value=1.1e-21 Score=121.86 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=72.1
Q ss_pred eeeEEEEEEcCC-CcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE------EeecccCCc
Q psy9980 20 MIGAGAVVLNDK-NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA------FRHTHKAAF 92 (124)
Q Consensus 20 ~~~~~~~v~~~~-~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~------~~~~~~~~~ 92 (124)
+.++++++++++ +++||++|+. .+.|.+|||++++||++++||.||++||||+++....... ....+....
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK--LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPK 79 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC--CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCC
Confidence 457888888876 8999999853 5899999999999999999999999999999876544432 111111111
Q ss_pred ----CcccEEEEEEeccCCccCC-CCcccccceeecC
Q psy9980 93 ----GCSDIYFIVRLKPLTQEIT-KDDREITESKWMD 124 (124)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~ 124 (124)
...++.++|.+....+... ..++|..+++|++
T Consensus 80 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~ 116 (138)
T cd03674 80 RGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFP 116 (138)
T ss_pred CCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEc
Confidence 1223334555544444433 2567889999985
No 16
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.88 E-value=1.5e-21 Score=120.15 Aligned_cols=109 Identities=24% Similarity=0.402 Sum_probs=79.1
Q ss_pred CCCCCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc
Q psy9980 10 ESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH 88 (124)
Q Consensus 10 ~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~ 88 (124)
.|....+.++..++.+++.++ +++||++|... ..|.|++|||++++||++++||+||++||||+++....++++....
T Consensus 3 ~~~~~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~ 81 (130)
T cd04511 3 DCGYIHYQNPKIIVGCVPEWE-GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP 81 (130)
T ss_pred CCccccCCCCcEEEEEEEecC-CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC
Confidence 455566677788888888877 79999999644 6789999999999999999999999999999998766666554321
Q ss_pred cCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 89 KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....++++|.+......+. ...|..+.+|++
T Consensus 82 ----~~~~~~~~f~~~~~~~~~~-~~~e~~~~~~~~ 112 (130)
T cd04511 82 ----HISQVYMFYRARLLDLDFA-PGPESLEVRLFT 112 (130)
T ss_pred ----CceEEEEEEEEEEcCCccc-CCcchhceEEEC
Confidence 1223444455444443333 345678888875
No 17
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.88 E-value=8.2e-22 Score=122.79 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=65.3
Q ss_pred eEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee-----cccCCcC
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH-----THKAAFG 93 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~-----~~~~~~~ 93 (124)
.+.+.+++.++++||+||+.. ++|.|++|||++++|||+++||+||+.||||+++....+..... ...+...
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADG 84 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCC
Confidence 344444444589999998543 67999999999999999999999999999999875433221100 0001111
Q ss_pred c---c-cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 94 C---S-DIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 ~---~-~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
. . .+++++.+......+.. ++|+.+++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~ 118 (141)
T PRK15472 85 RKEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVK 118 (141)
T ss_pred CceeEEEEEEEEEeecCCCcccC-ChhhheEEEcc
Confidence 1 1 12233444444433333 57889999986
No 18
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=1.2e-21 Score=119.49 Aligned_cols=98 Identities=31% Similarity=0.451 Sum_probs=71.9
Q ss_pred eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI 100 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (124)
.+++++++.++++||++|... .++.|.+|||+++.||++++||+||++||||+++....++...... ...+.++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~-----~~~~~~~ 76 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG-----GSWFRFV 76 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC-----CeEEEEE
Confidence 466777887789999999544 6899999999999999999999999999999999877766653221 2234445
Q ss_pred EEeccCCccCCC---CcccccceeecC
Q psy9980 101 VRLKPLTQEITK---DDREITESKWMD 124 (124)
Q Consensus 101 ~~~~~~~~~~~~---~~~e~~~~~W~~ 124 (124)
|.+....+.+.. +..|+.+++|++
T Consensus 77 f~a~~~~g~~~~~~~~~~e~~~~~W~~ 103 (123)
T cd04671 77 FTGNITGGDLKTEKEADSESLQARWYS 103 (123)
T ss_pred EEEEEeCCeEccCCCCCcceEEEEEEC
Confidence 555444433222 345677999986
No 19
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=7.5e-22 Score=120.94 Aligned_cols=101 Identities=25% Similarity=0.328 Sum_probs=69.7
Q ss_pred eEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
++.++++++++++||+||... .+|.|++| ||++++||++ +||+||++||||+++....+............ ...
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~-~~~ 79 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEG-FDD 79 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCC-eEE
Confidence 567788887789999999543 57899998 8999999999 99999999999999874433222211111112 222
Q ss_pred EEEEEeccCCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
++++...........+++|+.+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~E~~~~~w~~ 106 (127)
T cd04693 80 YYLFYADVEIGKLILQKEEVDEVKFVS 106 (127)
T ss_pred EEEEEecCcccccccCHHHhhhEEEeC
Confidence 334444333344455678899999986
No 20
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.88 E-value=1.9e-21 Score=120.09 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=69.6
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV 101 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (124)
++++++.++ +++||++|....++.|.+|||++++|||+.+||.||++||||+++....++..............+.++|
T Consensus 2 ~v~~ii~~~-~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f 80 (134)
T cd03675 2 TVAAVVERD-GRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF 80 (134)
T ss_pred eEEEEEEEC-CEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEE
Confidence 455565555 7999999965567899999999999999999999999999999988766666543221211222233334
Q ss_pred EeccCCccCC-CCcccccceeecC
Q psy9980 102 RLKPLTQEIT-KDDREITESKWMD 124 (124)
Q Consensus 102 ~~~~~~~~~~-~~~~e~~~~~W~~ 124 (124)
.+........ ...+|+.++.|++
T Consensus 81 ~~~~~~~~~~~~~~~e~~~~~w~~ 104 (134)
T cd03675 81 AAELLEHLPDQPLDSGIVRAHWLT 104 (134)
T ss_pred EEEECCCCCCCCCCCCceeeEEEe
Confidence 4433332222 2346788999985
No 21
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.87 E-value=2.1e-21 Score=120.29 Aligned_cols=101 Identities=22% Similarity=0.239 Sum_probs=72.9
Q ss_pred eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI 100 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (124)
++.+++.++ +++||++|... +.+.|.+|||+++.|||+.+||+||+.||||+++....++................++
T Consensus 3 ~~~~~i~~~-~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (137)
T cd03427 3 TTLCFIKDP-DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFV 81 (137)
T ss_pred EEEEEEEEC-CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEE
Confidence 455666666 79999999654 6899999999999999999999999999999998877766655432222123345555
Q ss_pred EEeccCCccCCCCcccccceeecC
Q psy9980 101 VRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 101 ~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
|.+......+. ..+|..+++|++
T Consensus 82 f~~~~~~~~~~-~~~e~~~~~W~~ 104 (137)
T cd03427 82 FLATEFEGEPL-KESEEGILDWFD 104 (137)
T ss_pred EEECCcccccC-CCCccccceEEc
Confidence 55554444333 245557889985
No 22
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=1.6e-21 Score=118.68 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=66.7
Q ss_pred EEEEEEcCCCcEEEEEecCC----CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEE
Q psy9980 23 AGAVVLNDKNQVLVVKEFYR----KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY 98 (124)
Q Consensus 23 ~~~~v~~~~~~iLl~~r~~~----~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 98 (124)
+++++.++ +++||++|... ++|.|++|||+++.||++++||.||+.||||+++....+......... . .....
T Consensus 4 ~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-~-~~~~~ 80 (122)
T cd04682 4 ALALLIGD-GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA-S-PPGTE 80 (122)
T ss_pred EEEEEEcC-CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC-C-CCceE
Confidence 44455555 89999999532 679999999999999999999999999999999864333222211111 1 12233
Q ss_pred EEEEeccCCc-cCCCCcccccceeecC
Q psy9980 99 FIVRLKPLTQ-EITKDDREITESKWMD 124 (124)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~e~~~~~W~~ 124 (124)
++|.+..... ....+.+|+.++.|++
T Consensus 81 ~~f~~~~~~~~~~~~~~~E~~~~~W~~ 107 (122)
T cd04682 81 HVFVVPLTAREDAILFGDEGQALRLMT 107 (122)
T ss_pred EEEEEEEecCCCccccCchhheeeccc
Confidence 3333333322 2345678999999986
No 23
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.87 E-value=1.5e-21 Score=122.49 Aligned_cols=58 Identities=26% Similarity=0.296 Sum_probs=52.0
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
++.++++++++.++++||++|+. .++.|++|||++++|||+++||+||++||||+++.
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~-~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~ 63 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRAD-DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVL 63 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecC-CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCcc
Confidence 56789999998878999998854 46899999999999999999999999999999883
No 24
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.87 E-value=1.4e-21 Score=119.98 Aligned_cols=102 Identities=31% Similarity=0.423 Sum_probs=71.0
Q ss_pred eeEEEEEEcCC---CcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--cCcc
Q psy9980 21 IGAGAVVLNDK---NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA--FGCS 95 (124)
Q Consensus 21 ~~~~~~v~~~~---~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~~~~ 95 (124)
.++++++++.+ +++||++|+. .+.|.||||++++|||+++||.||++||||+++.....+......... ....
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~--~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR--GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVH 79 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC--CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcc
Confidence 45677777754 7899999964 389999999999999999999999999999998866655543322111 1222
Q ss_pred cEEEEEEeccCCccCCC-CcccccceeecC
Q psy9980 96 DIYFIVRLKPLTQEITK-DDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~ 124 (124)
...++|.+......... .++|+.++.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~ 109 (131)
T cd03673 80 KTVHWWLMRALGGEFTPQPDEEVDEVRWLP 109 (131)
T ss_pred eEEEEEEEEEcCCCcccCCCCcEEEEEEcC
Confidence 33334444433333333 567889999986
No 25
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=1.9e-21 Score=119.61 Aligned_cols=105 Identities=28% Similarity=0.389 Sum_probs=73.3
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec---ccC-CcC
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT---HKA-AFG 93 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~---~~~-~~~ 93 (124)
.+..++.+++++.++++||++|.. .+.|++|||++++|||+.+||.||++||||+++....++..... +.. ..+
T Consensus 5 ~~~~~~~~~v~~~~~~vLL~~r~~--~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~ 82 (132)
T cd04677 5 LILVGAGVILLNEQGEVLLQKRSD--TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGD 82 (132)
T ss_pred ccccceEEEEEeCCCCEEEEEecC--CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCC
Confidence 456778888888878999999864 38999999999999999999999999999999887666644321 110 111
Q ss_pred -cccEEEE-EEeccCCccCCCCcccccceeecC
Q psy9980 94 -CSDIYFI-VRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 -~~~~~~~-~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....+.+ +........+..+.+|..+++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 115 (132)
T cd04677 83 DEQYIVTLYYVTKVFGGKLVPDGDETLELKFFS 115 (132)
T ss_pred cEEEEEEEEEEEeccCCcccCCCCceeeEEEEC
Confidence 1122222 222222333345667889999986
No 26
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=2.1e-21 Score=118.35 Aligned_cols=102 Identities=23% Similarity=0.347 Sum_probs=73.8
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc--Cc-c
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF--GC-S 95 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~--~~-~ 95 (124)
+.+.++++++++ +++||.+|+. .+.|.+|||++++|||+.+||+||++||||+.+...+++.......... .. .
T Consensus 1 p~~~v~~~i~~~-~~vLL~~~~~--~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd04672 1 PKVDVRAAIFKD-GKILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQ 77 (123)
T ss_pred CcceEEEEEEEC-CEEEEEEEcC--CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceE
Confidence 356788888887 7999999864 6999999999999999999999999999999887777776654332222 11 1
Q ss_pred cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.+.++|.+......+... +|..+++|++
T Consensus 78 ~~~~~f~~~~~~~~~~~~-~E~~~~~W~~ 105 (123)
T cd04672 78 VYKLFFLCEILGGEFKPN-IETSEVGFFA 105 (123)
T ss_pred EEEEEEEEEecCCcccCC-CceeeeEEEC
Confidence 223344444434343343 7889999985
No 27
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.87 E-value=1.9e-21 Score=119.36 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=72.3
Q ss_pred eEEEEEEcC--CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec---ccCCcC-cc
Q psy9980 22 GAGAVVLND--KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT---HKAAFG-CS 95 (124)
Q Consensus 22 ~~~~~v~~~--~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~---~~~~~~-~~ 95 (124)
.+.+++++. ++++||+||....++.|++|||+++.|||+.+||.||++||||+++....++..... +..... ..
T Consensus 3 ~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T cd04664 3 SVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGRV 82 (129)
T ss_pred EEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCceE
Confidence 567777776 789999999654689999999999999999999999999999999865555554321 111111 22
Q ss_pred cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...++|.+..........++|+.++.|++
T Consensus 83 ~~~~~f~~~~~~~~~~~~~~E~~~~~W~~ 111 (129)
T cd04664 83 WTEHPFAFHLPSDAVVTLDWEHDAFEWVP 111 (129)
T ss_pred EEEeEEEEEcCCCCcccCCccccccEecC
Confidence 23344444443332233457889999986
No 28
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.87 E-value=1e-21 Score=120.99 Aligned_cols=99 Identities=25% Similarity=0.370 Sum_probs=71.5
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV 101 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (124)
++.+++.++++++||++|+....|.|++|||+++.||++++||+||++||||+++....++..... ... ..+.+.|
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~---~~~-~~~~~~f 77 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPW---PFP-SSLMLGF 77 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCC---CCC-ceEEEEE
Confidence 455666777689999998543479999999999999999999999999999999876665544211 111 2333344
Q ss_pred EeccCCccCCCCcccccceeecC
Q psy9980 102 RLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 102 ~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.+..........++|+.++.|++
T Consensus 78 ~~~~~~~~~~~~~~E~~~~~w~~ 100 (131)
T cd03429 78 TAEADSGEIVVDDDELEDARWFS 100 (131)
T ss_pred EEEEcCCcccCCchhhhccEeec
Confidence 44444344455677889999986
No 29
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.87 E-value=2.3e-21 Score=120.14 Aligned_cols=103 Identities=19% Similarity=0.139 Sum_probs=71.9
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
+.++.++++++++++||++|... .++.|++|||+++.||++.+||+||++||||+++.....+...... .......
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~--~~~~~~~ 79 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPS--PGFSDER 79 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecC--CcccCcc
Confidence 45788899998899999987433 5679999999999999999999999999999998644444433221 1111222
Q ss_pred EEEEEeccCCcc--CCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQE--ITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~--~~~~~~e~~~~~W~~ 124 (124)
+.+|.+...... ....++|+.+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~E~~~~~w~~ 108 (137)
T cd03424 80 IHLFLAEDLSPGEEGLLDEGEDIEVVLVP 108 (137)
T ss_pred EEEEEEEcccccccCCCCCCCeeEEEEec
Confidence 333333333222 345667899999986
No 30
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.87 E-value=1.5e-21 Score=123.67 Aligned_cols=103 Identities=19% Similarity=0.162 Sum_probs=71.6
Q ss_pred eeEEEEEEcCC--CcEEEEEecCC---CCCCeeccceeecCC-CCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 21 IGAGAVVLNDK--NQVLVVKEFYR---KRPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 21 ~~~~~~v~~~~--~~iLl~~r~~~---~~~~w~~PgG~~~~g-Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
.++.+++.+.+ +++||+||... ++|.|++|||++++| ||+++||+||++||||+++....++............
T Consensus 3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 82 (157)
T cd03426 3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGF 82 (157)
T ss_pred eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCC
Confidence 35566666643 58999999653 689999999999999 9999999999999999998876666554322222222
Q ss_pred ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....+++.+... ..+..+++|+.++.|++
T Consensus 83 ~v~~~~~~~~~~-~~~~~~~~E~~~~~W~~ 111 (157)
T cd03426 83 VVTPVVGLVPPP-LPLVLNPDEVAEVFEVP 111 (157)
T ss_pred EEEEEEEEECCC-CCCCCCHHHhheeEEEc
Confidence 222233333222 24455677999999986
No 31
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=2.3e-21 Score=117.97 Aligned_cols=65 Identities=26% Similarity=0.469 Sum_probs=54.8
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH 86 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~ 86 (124)
.++++++++++++||++|.....+.|.||||+++.|||+++||+||++||||+++....++....
T Consensus 2 ~~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~ 66 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVN 66 (121)
T ss_pred ceEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEe
Confidence 45677777668999999965456899999999999999999999999999999997766666543
No 32
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=4.5e-21 Score=117.59 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=70.5
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC-----C-cCc
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA-----A-FGC 94 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-----~-~~~ 94 (124)
.++++++.++ +++||++|....++.|.+|||++++|||+++||+||+.||||+++...++..+...... . ...
T Consensus 2 ~~a~~iv~~~-~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04687 2 NSAKAVIIKN-DKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF 80 (128)
T ss_pred cEEEEEEEEC-CEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence 5677777775 79999999644568899999999999999999999999999999886666555432211 1 112
Q ss_pred ccEEEEEEeccCCccC---C-CCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEI---T-KDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~---~-~~~~e~~~~~W~~ 124 (124)
+.+.++|.+....+.. . ..+++..+++|++
T Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~ 114 (128)
T cd04687 81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLK 114 (128)
T ss_pred eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEc
Confidence 3344445444433221 1 1233456899985
No 33
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.87 E-value=3.4e-21 Score=117.94 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=70.8
Q ss_pred eEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
++++++++.++++||++|... .+|.|++ |||++++||++++||+||+.||||+++.....+...... .......
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~--~~~~~~~ 79 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYD--TDGNRVW 79 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEec--CCCceEE
Confidence 678899998899999998533 5899999 699999999999999999999999988744444333211 1111222
Q ss_pred EEEEEeccCCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..+|.+.. ......+++|+.+++|++
T Consensus 80 ~~~f~~~~-~~~~~~~~~E~~~~~w~~ 105 (126)
T cd04697 80 GKVFSCVY-DGPLKLQEEEVEEITWLS 105 (126)
T ss_pred EEEEEEEE-CCCCCCCHhHhhheEEcC
Confidence 22333332 234445678889999986
No 34
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.87 E-value=4.6e-21 Score=120.23 Aligned_cols=105 Identities=25% Similarity=0.430 Sum_probs=73.7
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee---cccCC----
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH---THKAA---- 91 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~---~~~~~---- 91 (124)
.+.++.+++++.++++||++|.... +.|++|||++++||++.+||+||+.||||+++....++.... .+...
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~-~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~ 80 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTP-GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELK 80 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCC-CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhh
Confidence 3568889999877899999996433 899999999999999999999999999999987666655421 01000
Q ss_pred -------c-CcccEEEEEEeccCCccCCC---CcccccceeecC
Q psy9980 92 -------F-GCSDIYFIVRLKPLTQEITK---DDREITESKWMD 124 (124)
Q Consensus 92 -------~-~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~W~~ 124 (124)
. +...+++++.+......... .++|+.+++|++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~ 124 (147)
T cd03671 81 LKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVP 124 (147)
T ss_pred ccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCC
Confidence 0 11223444444432233333 256899999986
No 35
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.86 E-value=2.4e-21 Score=130.97 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=84.4
Q ss_pred CCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980 7 DDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH 86 (124)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~ 86 (124)
.+..|....++++..++.+++.++ +++||++|.....|.|++|||++++|||+++||+||++||||+++...+++....
T Consensus 119 ~C~~c~~~~yp~~~paViv~V~~~-~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~ 197 (256)
T PRK00241 119 LCPHCRERYYPRIAPCIIVAVRRG-DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQP 197 (256)
T ss_pred ECCCCCCEECCCCCCEEEEEEEeC-CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEe
Confidence 355677777787777777777665 7999999854457999999999999999999999999999999988666665432
Q ss_pred cccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 87 THKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
. .+ ...+++.|.+....+.+..+++|..+++|++
T Consensus 198 ~---~~-p~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~ 231 (256)
T PRK00241 198 W---PF-PHSLMLGFHADYDSGEIVFDPKEIADAQWFR 231 (256)
T ss_pred e---cC-CCeEEEEEEEEecCCcccCCcccEEEEEEEC
Confidence 1 11 1234455555555555666677999999986
No 36
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=4.5e-21 Score=117.21 Aligned_cols=103 Identities=31% Similarity=0.461 Sum_probs=71.2
Q ss_pred eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc----cCCcC--
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH----KAAFG-- 93 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~----~~~~~-- 93 (124)
+..+++++.++++++||+||.. .|.|.+|||+++.||++++||+||++||||+++....+++..... ....+
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~--~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSD--NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDV 79 (129)
T ss_pred cceEEEEEECCCCeEEEEEecC--CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCc
Confidence 4577888888878999999964 389999999999999999999999999999988766654332111 11111
Q ss_pred cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 94 CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...+.++|.+....+......+|..+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~ 110 (129)
T cd04676 80 RQYLDITFRCRVVGGELRVGDDESLDVAWFD 110 (129)
T ss_pred EEEEEEEEEEEeeCCeecCCCCceeEEEEEC
Confidence 1233333433333333323456778899985
No 37
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=4.8e-21 Score=117.26 Aligned_cols=103 Identities=28% Similarity=0.422 Sum_probs=70.7
Q ss_pred eeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
+++++++.++++++||+||... ++|.|++|||++++|||+.+||+||+.||||+++....+......+.........
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence 4677788887689999999543 4899999999999999999999999999999988765553222122111112333
Q ss_pred EEEEEeccCCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
++++.+..... ....++|..+++|++
T Consensus 82 ~~~~~~~~~~~-~~~~~~e~~~~~w~~ 107 (129)
T cd04699 82 YLVFVCEALSG-AVKLSDEHEEYAWVT 107 (129)
T ss_pred EEEEEeeecCC-cccCChhheEEEEec
Confidence 34444433322 223456788899985
No 38
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=1.2e-20 Score=114.20 Aligned_cols=96 Identities=23% Similarity=0.292 Sum_probs=64.4
Q ss_pred EEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980 23 AGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF 99 (124)
Q Consensus 23 ~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (124)
+++++.++ +++||+||... .+|.|+||||++++||++++||+||+.||||+++.....+...... ......+.
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~---~~~~~~~~ 78 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHP---TSELQLLH 78 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEecc---CCCeEEEE
Confidence 34455555 79999998532 6799999999999999999999999999999986433333322221 11222333
Q ss_pred EEEeccCCccCCCCcccccceeecC
Q psy9980 100 IVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 100 ~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
+|.+....+.+ ..+|+.++.|++
T Consensus 79 ~~~~~~~~~~~--~~~E~~~~~W~~ 101 (117)
T cd04691 79 YYVVTFWQGEI--PAQEAAEVHWMT 101 (117)
T ss_pred EEEEEEecCCC--CcccccccEEcC
Confidence 33333333332 347889999986
No 39
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.86 E-value=1.5e-20 Score=118.90 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=74.5
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee---cccC---
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH---THKA--- 90 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~---~~~~--- 90 (124)
...+.++.+++++.+|++||+||.. .++.|++|||++++||++++||.||+.||||+++....++.... .+..
T Consensus 5 ~~~~~~v~~~i~~~~g~vLL~~r~~-~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~ 83 (156)
T PRK00714 5 DGYRPNVGIILLNRQGQVFWGRRIG-QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKR 83 (156)
T ss_pred CCCCCeEEEEEEecCCEEEEEEEcC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHH
Confidence 3467789999999889999999964 35899999999999999999999999999999987555554421 0100
Q ss_pred --------CcCcccEEEEEEeccCCccCCC---CcccccceeecC
Q psy9980 91 --------AFGCSDIYFIVRLKPLTQEITK---DDREITESKWMD 124 (124)
Q Consensus 91 --------~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~W~~ 124 (124)
..+...++|++........... +++|+.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~ 128 (156)
T PRK00714 84 LVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVS 128 (156)
T ss_pred HhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCC
Confidence 0111223444444322223222 346899999986
No 40
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.86 E-value=5.2e-21 Score=119.71 Aligned_cols=55 Identities=36% Similarity=0.630 Sum_probs=46.8
Q ss_pred eEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980 22 GAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 22 ~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~ 78 (124)
.+++++++. ++++||+||.. .+.|+||||++++|||+.+||+||++||||+++..
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~--~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK--SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISK 58 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC--CCCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence 466777774 46999999853 35999999999999999999999999999998764
No 41
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=6.7e-21 Score=119.10 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=70.7
Q ss_pred eeeEEEEEEcCC---CcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccce--eEEEeec-cc
Q psy9980 20 MIGAGAVVLNDK---NQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHS--VVAFRHT-HK 89 (124)
Q Consensus 20 ~~~~~~~v~~~~---~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~--~~~~~~~-~~ 89 (124)
+.++.+++++.+ +++|+++|... .+|.|++ |||++++|||+++||+||+.||||+.+.... .+..... +.
T Consensus 2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~ 81 (144)
T cd04692 2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYD 81 (144)
T ss_pred ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEecc
Confidence 457888888866 79999999543 6899999 5999999999999999999999999875332 2322221 11
Q ss_pred -C-CcCcccEEEEEEeccCC--ccCCCCcccccceeecC
Q psy9980 90 -A-AFGCSDIYFIVRLKPLT--QEITKDDREITESKWMD 124 (124)
Q Consensus 90 -~-~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~W~~ 124 (124)
. ......+..+|.+.... ..+..+++|+.+++|++
T Consensus 82 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~ 120 (144)
T cd04692 82 HIGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIP 120 (144)
T ss_pred ccCCCccceEEEEEEEeccCChhhcCCChhHhheEEEEC
Confidence 0 11111232333333222 34445678899999986
No 42
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.86 E-value=1.7e-20 Score=114.58 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=69.9
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC--cccEE
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG--CSDIY 98 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~--~~~~~ 98 (124)
+++.+++.++ +++||++|+ ..+.|.+|||++++||++.+||+||++||||+++....++........... ...+.
T Consensus 2 ~~~~~vi~~~-~~vLlv~~~--~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~ 78 (125)
T cd04689 2 LRARAIVRAG-NKVLLARVI--GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEIN 78 (125)
T ss_pred eEEEEEEEeC-CEEEEEEec--CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEE
Confidence 4677777765 799999985 357999999999999999999999999999999887766665432211111 22333
Q ss_pred EEEEeccCCc--c-CCCCcccccceeecC
Q psy9980 99 FIVRLKPLTQ--E-ITKDDREITESKWMD 124 (124)
Q Consensus 99 ~~~~~~~~~~--~-~~~~~~e~~~~~W~~ 124 (124)
++|.+..... . ....++++.+++|++
T Consensus 79 ~~f~~~~~~~~~~~~~~~~~e~~~~~W~~ 107 (125)
T cd04689 79 HIFAVESSWLASDGPPQADEDHLSFSWVP 107 (125)
T ss_pred EEEEEEcccccccCCccCccceEEEEEcc
Confidence 4444433321 1 122456788999985
No 43
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=1.5e-20 Score=115.03 Aligned_cols=100 Identities=22% Similarity=0.350 Sum_probs=69.0
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc-C-CcCcccEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK-A-AFGCSDIYF 99 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-~-~~~~~~~~~ 99 (124)
.++++++++ +++||+||.. .+.|.+|||++++||++.+||.||+.||||+++....++....... . ......+.+
T Consensus 3 ~v~~vi~~~-~~vLl~~~~~--~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNPD--ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF 79 (126)
T ss_pred EEEEEEEEC-CEEEEEEeCC--CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEE
Confidence 455566665 4999998853 6899999999999999999999999999999988766665543221 1 111233444
Q ss_pred EEEeccCCccCCC-------CcccccceeecC
Q psy9980 100 IVRLKPLTQEITK-------DDREITESKWMD 124 (124)
Q Consensus 100 ~~~~~~~~~~~~~-------~~~e~~~~~W~~ 124 (124)
+|.+....+.... +.+|+.++.|++
T Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 111 (126)
T cd04688 80 YYLVTLLDESLYQQDIEILEEEGEKIVFRWIP 111 (126)
T ss_pred EEEEEeCCCcccccccceeccCCCEEEEEEee
Confidence 5555444333221 456788999985
No 44
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.86 E-value=2e-20 Score=113.09 Aligned_cols=99 Identities=24% Similarity=0.253 Sum_probs=68.9
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc--ceeEEEeecccCCcC-cccEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF--HSVVAFRHTHKAAFG-CSDIY 98 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~~~~~~-~~~~~ 98 (124)
.+++++++.++++||+||+ ..+.|.+|||++++|||+++||+||++||||+.+.. ...+........... .....
T Consensus 2 ~~~~~v~~~~~~vLl~~r~--~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (118)
T cd04690 2 IAAALILVRDGRVLLVRKR--GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRA 79 (118)
T ss_pred eEEEEEEecCCeEEEEEEC--CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEE
Confidence 3556666666899999886 358899999999999999999999999999998876 555544432211111 22344
Q ss_pred EEEEeccCCccCCCCcccccceeecC
Q psy9980 99 FIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 99 ~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
++|.+.... .+. ..+|+.++.|++
T Consensus 80 ~~f~~~~~~-~~~-~~~e~~~~~W~~ 103 (118)
T cd04690 80 TVYVAELTG-EPV-PAAEIEEIRWVD 103 (118)
T ss_pred EEEEEcccC-CcC-CCchhhccEEec
Confidence 445544433 222 356889999986
No 45
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.86 E-value=5.2e-21 Score=117.54 Aligned_cols=106 Identities=30% Similarity=0.428 Sum_probs=76.3
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC--
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG-- 93 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~-- 93 (124)
.+.++.+++++.++++||.+|... .++.|.+|||++++|||+.+||+||+.||||+++.................
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPE 80 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESS
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCcc
Confidence 367899999998789999999654 469999999999999999999999999999999865555554433322222
Q ss_pred -cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 94 -CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...+++.+..............|+.++.|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 112 (134)
T PF00293_consen 81 GEIVIFFIAELPSEQSEIQPQDEEISEVKWVP 112 (134)
T ss_dssp EEEEEEEEEEEEEEESECHTTTTTEEEEEEEE
T ss_pred cEEEEEEEEEEeCCccccCCCCccEEEEEEEE
Confidence 2223334444333334444445889999985
No 46
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.5e-20 Score=115.76 Aligned_cols=96 Identities=22% Similarity=0.143 Sum_probs=63.3
Q ss_pred cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe-ecccCCcCcccEEEEEEeccCC
Q psy9980 29 NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR-HTHKAAFGCSDIYFIVRLKPLT 107 (124)
Q Consensus 29 ~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 107 (124)
++++++||.+|....+|.|.+|||++++|||+.+||+||++||||+++......... ..+........+..+|.+....
T Consensus 11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 90 (131)
T cd04695 11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPP 90 (131)
T ss_pred CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecC
Confidence 466799999996546899999999999999999999999999999988643221111 1111112222233333333322
Q ss_pred ccCCCCcccccceeecC
Q psy9980 108 QEITKDDREITESKWMD 124 (124)
Q Consensus 108 ~~~~~~~~e~~~~~W~~ 124 (124)
.......+|+.+++|++
T Consensus 91 ~~~~~~~~E~~~~~W~~ 107 (131)
T cd04695 91 HQEVVLNHEHTEYRWCS 107 (131)
T ss_pred CCccccCchhcccEecC
Confidence 22223347899999986
No 47
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.85 E-value=2.2e-20 Score=119.24 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=73.9
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCcccceeE-EEe-ecccCCc-
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSVV-AFR-HTHKAAF- 92 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~-~~~-~~~~~~~- 92 (124)
+.++.++++++++++||+||... .+|.|++| ||++++||++++||+||++||||+++....++ ... +......
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG 109 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence 66788888998899999999654 68999996 89999999999999999999999998765554 221 1111111
Q ss_pred -CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 93 -GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....+.++|.+.... ....+++|+.+++|++
T Consensus 110 ~~~~~i~~~f~~~~~~-~~~~~~~Ev~~~~w~~ 141 (165)
T cd02885 110 LVEHEIDHVFFARADV-TLIPNPDEVSEYRWVS 141 (165)
T ss_pred ceeeEEEEEEEEEeCC-CCCCCccceeEEEEEC
Confidence 112233444444332 3344678899999986
No 48
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=4.5e-20 Score=115.13 Aligned_cols=104 Identities=22% Similarity=0.407 Sum_probs=70.7
Q ss_pred eeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc----eeEEEeec-ccC--
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH----SVVAFRHT-HKA-- 90 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~----~~~~~~~~-~~~-- 90 (124)
+.+++++++.++++||+||... ++|.|++|||++++||++++||+||+.||+|+.+... +++++..+ +..
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 4677888888889999999542 6899999999999999999999999999999988653 34443221 111
Q ss_pred ---CcCccc-EEEEEEeccCC-----ccCCCCcccccceeecC
Q psy9980 91 ---AFGCSD-IYFIVRLKPLT-----QEITKDDREITESKWMD 124 (124)
Q Consensus 91 ---~~~~~~-~~~~~~~~~~~-----~~~~~~~~e~~~~~W~~ 124 (124)
.....+ +.+++...... ..+.++++|+.+++|++
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~ 124 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLD 124 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeC
Confidence 011122 22222222211 12334568999999985
No 49
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.84 E-value=4.1e-20 Score=119.43 Aligned_cols=103 Identities=19% Similarity=0.170 Sum_probs=70.8
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
.+.++.+++++.++++||++|... ++|.|+ +|||++++|||+++||+||+.||||+++.......... +... ..
T Consensus 36 ~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~-~~~~-~~ 113 (180)
T PRK15393 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFY-FEDE-NC 113 (180)
T ss_pred ceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEE-ecCC-Cc
Confidence 456778888998899999998533 467775 79999999999999999999999999865443333221 1111 11
Q ss_pred ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.....+|.+.. .+....+++|+.++.|++
T Consensus 114 ~~~~~~f~~~~-~~~~~~~~~E~~~~~W~~ 142 (180)
T PRK15393 114 RVWGALFSCVS-HGPFALQEEEVSEVCWMT 142 (180)
T ss_pred eEEEEEEEEEe-CCCCCCChHHeeEEEECC
Confidence 11222333332 334455678999999986
No 50
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.83 E-value=1e-19 Score=110.87 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=65.4
Q ss_pred EEEEEEcC---CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc-eeEEEeecccCCc--Cccc
Q psy9980 23 AGAVVLND---KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH-SVVAFRHTHKAAF--GCSD 96 (124)
Q Consensus 23 ~~~~v~~~---~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~~~~~--~~~~ 96 (124)
+.+++++. .+++||++|+. .+.|.+|||+++.|||+.+||+||++||||+++... .++.......... ....
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~--~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~ 80 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRR--TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRC 80 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecC--CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceE
Confidence 45555553 35899998853 389999999999999999999999999999988765 5665543322211 1122
Q ss_pred EEEEEEeccCCccCCCCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.+++|.+.........+..+..+++|++
T Consensus 81 ~~~~f~~~~~~~~~~~~~~e~~~~~W~~ 108 (122)
T cd04666 81 EVAVFPLEVTEELDEWPEMHQRKRKWFS 108 (122)
T ss_pred EEEEEEEEEeccccCCcccCceEEEEec
Confidence 3333333332222222345678899986
No 51
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.83 E-value=6.3e-20 Score=112.64 Aligned_cols=100 Identities=29% Similarity=0.332 Sum_probs=65.8
Q ss_pred eeEEEEEEcCCC---cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe-ecccCC-cCcc
Q psy9980 21 IGAGAVVLNDKN---QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR-HTHKAA-FGCS 95 (124)
Q Consensus 21 ~~~~~~v~~~~~---~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~-~~~~~~-~~~~ 95 (124)
.++.+++++.++ ++||.||+. +.|.+|||++++|||+.+||+||+.||||+++....++... ..+... ....
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY---GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKL 79 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC---CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcc
Confidence 456666666333 689998863 89999999999999999999999999999998865553111 111111 1122
Q ss_pred cEEEEEEeccC-CccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPL-TQEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~e~~~~~W~~ 124 (124)
.++++|.+... ...+..+ +|..++.|++
T Consensus 80 ~~~~~f~~~~~~~~~~~~~-~E~~~~~W~~ 108 (130)
T cd03428 80 KTVTYFLAELRPDVEVKLS-EEHQDYRWLP 108 (130)
T ss_pred eEEEEEEEEeCCCCccccc-cceeeEEeec
Confidence 33333443333 2233333 7889999986
No 52
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.83 E-value=1.1e-19 Score=115.19 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=73.5
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCccccee--EEEeecc-c
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEFHSV--VAFRHTH-K 89 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~--~~~~~~~-~ 89 (124)
...+.++++++++++|++||+||+.. ++|.|++| ||+++.|| .+||+||++||||+++....+ +...... .
T Consensus 24 g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~ 101 (158)
T TIGR02150 24 TPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRAR 101 (158)
T ss_pred CCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEe
Confidence 45567888999998899999999643 78999997 89999999 499999999999999875542 2211111 1
Q ss_pred CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...+...+.++|.+.... .+.++++|+.++.|++
T Consensus 102 ~~~g~~~~~~~f~~~~~~-~~~~~~~Ev~~~~W~~ 135 (158)
T TIGR02150 102 DAWGEHELCPVFFARAPV-PLNPNPEEVAEYRWVS 135 (158)
T ss_pred cCCCcEEEEEEEEEecCC-cccCChhHeeeEEEeC
Confidence 111223344455444333 4455667999999986
No 53
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.83 E-value=1.3e-19 Score=117.52 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=73.1
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCCHHHHHHHHHHHHhccCccc-ceeEEEeec-ccCC
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSEDIGEAAVREVFEETNIRTEF-HSVVAFRHT-HKAA 91 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs~~~aa~RE~~EE~Gl~~~~-~~~~~~~~~-~~~~ 91 (124)
..+.++.++++++++++||+||+.. ++|.|++| ||++++||++++||+||+.||||+++.. ..+...... ....
T Consensus 32 ~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 111 (184)
T PRK03759 32 PLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDP 111 (184)
T ss_pred CeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecC
Confidence 4577888889998899999998533 67889986 8999999999999999999999998863 222222211 1111
Q ss_pred cC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 92 FG--CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 92 ~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.. ...+.++|.+... +.+..+++|+.++.|++
T Consensus 112 ~~~~~~~~~~vf~~~~~-~~~~~~~~Ev~~~~W~~ 145 (184)
T PRK03759 112 NGIVENEVCPVFAARVT-SALQPNPDEVMDYQWVD 145 (184)
T ss_pred CCceeeEEEEEEEEEEC-CCCCCChhHeeeEEEEC
Confidence 11 1123334444333 34455678899999986
No 54
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.4e-19 Score=107.64 Aligned_cols=92 Identities=25% Similarity=0.321 Sum_probs=63.1
Q ss_pred EEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEEE
Q psy9980 23 AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVR 102 (124)
Q Consensus 23 ~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (124)
+++++.+ ++++||++|+ .|.|.+|||++++||++.+||.||+.||||+++.....+.... . . ....++|.
T Consensus 3 a~~i~~~-~~~vLlv~r~---~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~---~-~--~~~~~~f~ 72 (112)
T cd04667 3 ATVICRR-GGRVLLVRKS---GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVD---G-G--STRHHVFV 72 (112)
T ss_pred eEEEEec-CCEEEEEEcC---CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEe---C-C--CEEEEEEE
Confidence 3444444 4799999994 4899999999999999999999999999999876544443321 1 1 12223343
Q ss_pred eccCCccCCCCcccccceeecC
Q psy9980 103 LKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 103 ~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
+.........+++|+.+++|++
T Consensus 73 ~~~~~~~~~~~~~e~~~~~W~~ 94 (112)
T cd04667 73 ASVPPSAQPKPSNEIADCRWLS 94 (112)
T ss_pred EEcCCcCCCCCchheeEEEEec
Confidence 3333222233467888999986
No 55
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.82 E-value=3.5e-19 Score=110.01 Aligned_cols=97 Identities=21% Similarity=0.315 Sum_probs=63.3
Q ss_pred EEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980 23 AGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI 100 (124)
Q Consensus 23 ~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (124)
+++++ +.++++||+||... ++|.|+||||++++||++.+|++||+.||||+++....++....+... .......+
T Consensus 7 ~~~ii-~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~~~~ 83 (135)
T PRK10546 7 VAAII-ERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVS--GRRIHLHA 83 (135)
T ss_pred EEEEE-ecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecC--CcEEEEEE
Confidence 34444 44579999999543 789999999999999999999999999999999876555443322211 11112223
Q ss_pred EEeccCCccCCCCcccccceeecC
Q psy9980 101 VRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 101 ~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
|.+....+.+ ...|..+++|++
T Consensus 84 ~~~~~~~~~~--~~~e~~~~~W~~ 105 (135)
T PRK10546 84 WHVPDFHGEL--QAHEHQALVWCT 105 (135)
T ss_pred EEEEEecCcc--cccccceeEEcC
Confidence 3332222221 234567888975
No 56
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.82 E-value=4.5e-19 Score=108.44 Aligned_cols=65 Identities=23% Similarity=0.423 Sum_probs=53.2
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~ 84 (124)
...+++++.+++|++||+||... ++|.|+||||++++||++.+||.||+.||+|+++.....+..
T Consensus 4 ~~~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~ 70 (129)
T PRK10776 4 LQIAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEK 70 (129)
T ss_pred eEEEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEE
Confidence 34455666777789999999654 689999999999999999999999999999998765444443
No 57
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.82 E-value=6.4e-19 Score=106.24 Aligned_cols=103 Identities=30% Similarity=0.488 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV 101 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (124)
++++++.++++++||++|...+++.|.+|+|+++.||++.++|+||+.||+|+.+......................++|
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVF 81 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEE
Confidence 56778888768999999954357999999999999999999999999999999876444444433222222333444455
Q ss_pred EeccCCccC-CCCcccccceeecC
Q psy9980 102 RLKPLTQEI-TKDDREITESKWMD 124 (124)
Q Consensus 102 ~~~~~~~~~-~~~~~e~~~~~W~~ 124 (124)
.+....... .....|..+++|++
T Consensus 82 ~~~~~~~~~~~~~~~e~~~~~w~~ 105 (123)
T cd02883 82 LARLVGGEPTLLPPDEISEVRWVT 105 (123)
T ss_pred EEEeCCCCcCCCCCCccceEEEEc
Confidence 444433322 13456778888985
No 58
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=5.9e-19 Score=108.71 Aligned_cols=61 Identities=28% Similarity=0.372 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc-ccceeEEEe
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT-EFHSVVAFR 85 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~-~~~~~~~~~ 85 (124)
++.++|+++ +++||+++.. .+.|.||||++++||++.+||+||++||||+++ .....+...
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~ 63 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR--YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTY 63 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC--CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEE
Confidence 567777776 7999999853 368999999999999999999999999999987 344444433
No 59
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.81 E-value=2.8e-19 Score=110.31 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=62.8
Q ss_pred CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe----ecccCC------cCcccEEEE
Q psy9980 31 KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR----HTHKAA------FGCSDIYFI 100 (124)
Q Consensus 31 ~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~----~~~~~~------~~~~~~~~~ 100 (124)
++++||+|++++..|.|.||||++++|||+++||+||+.||||+.+... +++.. ..+... .......++
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAK-FYGNAPVGFYKYKYPKAVRNEGIVGAKVFF 90 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEE-EEEecCcEEEEEecCcccccccCcccEEEE
Confidence 3689999996545689999999999999999999999999999987642 22110 011111 111234555
Q ss_pred EEeccCCccCCCCcccccceeecC
Q psy9980 101 VRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 101 ~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
|.+...++.+.. .+|+.+++|++
T Consensus 91 f~~~~~~g~~~~-~~e~~~~~W~~ 113 (132)
T cd04661 91 FKARYMSGQFEL-SQNQVDFKWLA 113 (132)
T ss_pred EEEEEecCcccc-CCCcceeEecC
Confidence 655555554443 47889999986
No 60
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.80 E-value=8.9e-20 Score=122.58 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=97.5
Q ss_pred cCCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE
Q psy9980 4 WLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83 (124)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~ 83 (124)
|-..++.|....++++..++.+++.+++ ++||.++....+|.+++-+|+|++|||+++|+.||++||+|++++..++++
T Consensus 128 ~~~~C~~cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~ 206 (279)
T COG2816 128 WARVCPKCGHEHFPRIDPCVIVAVIRGD-EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVG 206 (279)
T ss_pred eeeeCCCCCCccCCCCCCeEEEEEecCC-ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEe
Confidence 4445677888999999999999999984 588888854579999999999999999999999999999999999888776
Q ss_pred EeecccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 84 FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.. ...-.+.+++.|.+...+++++.+..|..+.+||+
T Consensus 207 SQ----PWPfP~SLMigf~aey~sgeI~~d~~Eleda~WFs 243 (279)
T COG2816 207 SQ----PWPFPHSLMLGFMAEYDSGEITPDEGELEDARWFS 243 (279)
T ss_pred cc----CCCCchhhhhhheeeeccccccCCcchhhhccccC
Confidence 53 33334567778888888888888889999999985
No 61
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=1.6e-18 Score=106.08 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=53.5
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~ 84 (124)
...+++++.++++++|+++|... ++|.|+||||++++||++++++.||+.||+|+++.....+..
T Consensus 4 ~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~ 70 (128)
T TIGR00586 4 QQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKL 70 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE
Confidence 44556666677779999999544 789999999999999999999999999999998775544443
No 62
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.80 E-value=6.3e-19 Score=123.71 Aligned_cols=108 Identities=23% Similarity=0.373 Sum_probs=70.9
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe---ecc--c
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR---HTH--K 89 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~---~~~--~ 89 (124)
++++.+++.++++.+ |++||++|... ++|.|.+|||++++|||+++||+||++||||+++....+.... ..+ +
T Consensus 199 ~~~~~vtv~avv~~~-g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p 277 (340)
T PRK05379 199 YPPTFVTVDAVVVQS-GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP 277 (340)
T ss_pred CCCcceEEEEEEEEC-CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence 344557777777765 79999999654 6899999999999999999999999999999987654333221 111 1
Q ss_pred CCc-CcccEEEEEEeccCCcc-C-CCCcccccceeecC
Q psy9980 90 AAF-GCSDIYFIVRLKPLTQE-I-TKDDREITESKWMD 124 (124)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~-~-~~~~~e~~~~~W~~ 124 (124)
... ....+.++|.+....+. + ....+|..+++|++
T Consensus 278 ~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~ 315 (340)
T PRK05379 278 GRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVP 315 (340)
T ss_pred CCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEE
Confidence 111 11223333333322221 1 12456889999985
No 63
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.80 E-value=2.6e-18 Score=111.54 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=66.7
Q ss_pred eEEEEEEcCCCcEEEEEec-CC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEF-YR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF 99 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~-~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (124)
++.++.+++++++||+++. .. ....|+||||.+++||++++||+||+.||||+++.....+......+.... ..+.
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~--~~~~ 126 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFS--SKMN 126 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccC--cEEE
Confidence 4666666666789999883 33 678899999999999999999999999999999987766665432222222 2222
Q ss_pred EEEeccCCc-cCCCCcccccceeecC
Q psy9980 100 IVRLKPLTQ-EITKDDREITESKWMD 124 (124)
Q Consensus 100 ~~~~~~~~~-~~~~~~~e~~~~~W~~ 124 (124)
+|.+..... .....+.|..++.|+|
T Consensus 127 ~f~a~~~~~~~~~~~e~E~i~~~~~~ 152 (185)
T PRK11762 127 IVLAEDLYPERLEGDEPEPLEVVRWP 152 (185)
T ss_pred EEEEEccccccCCCCCCceeEEEEEc
Confidence 333332222 1222345556677764
No 64
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.79 E-value=3.8e-18 Score=103.39 Aligned_cols=99 Identities=23% Similarity=0.326 Sum_probs=66.8
Q ss_pred eEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF 99 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (124)
.+++++.++++++||++|+.. ++|.|+||||+++.+|+++++|.||+.||+|+++.....+....+... ......+
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~--~~~~~~~ 80 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYP--DKRVTLH 80 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCC--CCeEEEE
Confidence 345566676689999999644 799999999999999999999999999999998775555444322211 1222333
Q ss_pred EEEeccCCccCCCCcccccceeecC
Q psy9980 100 IVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 100 ~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
+|.+....... ...|..++.|++
T Consensus 81 ~~~~~~~~~~~--~~~e~~~~~W~~ 103 (124)
T cd03425 81 VFLVELWSGEP--QLLEHQELRWVP 103 (124)
T ss_pred EEEEeeeCCCc--ccccCceEEEee
Confidence 44333322221 245667888875
No 65
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=3.8e-18 Score=105.31 Aligned_cols=61 Identities=34% Similarity=0.432 Sum_probs=52.6
Q ss_pred eEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCc-ccceeE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT-EFHSVV 82 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~-~~~~~~ 82 (124)
++.+++++.++++||+++... ..+.|.+|||++++||++.+||.||+.||||+++ ....++
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~ 66 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPV 66 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceE
Confidence 678899998899999998543 5689999999999999999999999999999988 444443
No 66
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=8.3e-18 Score=101.55 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=62.3
Q ss_pred eEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI 100 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (124)
.+++++..++ ++||.+|+.. ..|.|.||||++++||++.+||.||+.||+|+++....+.... .+.... ...+++.
T Consensus 6 ~av~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~-~~~~~~-~~~~~~~ 82 (118)
T cd04674 6 VVVALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD-VRSAPD-GTLLVFG 82 (118)
T ss_pred EEEEEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEE-EEecCC-CeEEEEE
Confidence 3333343443 4666666544 6799999999999999999999999999999988643332222 222222 2234444
Q ss_pred EEeccCCccC--CCCcccccceeec
Q psy9980 101 VRLKPLTQEI--TKDDREITESKWM 123 (124)
Q Consensus 101 ~~~~~~~~~~--~~~~~e~~~~~W~ 123 (124)
+......... ...+.|..++.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~E~~~~~~~ 107 (118)
T cd04674 83 LLPERRAADLPPFEPTDETTERAVV 107 (118)
T ss_pred EEeccccccCCCCCCCcceeeEEEc
Confidence 4444443332 2356677777776
No 67
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.78 E-value=5.6e-18 Score=102.85 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=64.3
Q ss_pred eEEEEEEc---CCCcEEEEEecC-----CCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980 22 GAGAVVLN---DKNQVLVVKEFY-----RKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG 93 (124)
Q Consensus 22 ~~~~~v~~---~~~~iLl~~r~~-----~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 93 (124)
++++++++ +..++||++|.. +..+.|++|||+++.||++.+||+||++||||+++. ..+....... ....
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~-~~~~ 79 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLK-QSGG 79 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEE-CCCC
Confidence 45566664 223689998632 246899999999999999999999999999999876 2222221111 1111
Q ss_pred --------------cccEEEEEEeccCCccCCCC-cccccceeecC
Q psy9980 94 --------------CSDIYFIVRLKPLTQEITKD-DREITESKWMD 124 (124)
Q Consensus 94 --------------~~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~ 124 (124)
......+|.....++.+... .+|..+++|||
T Consensus 80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 11122334444334444443 68999999986
No 68
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.78 E-value=6.3e-18 Score=109.92 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=68.0
Q ss_pred eeeEEEEEE--cCCCcEEEEEecCC---CCCCeeccceeecCC-CCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980 20 MIGAGAVVL--NDKNQVLVVKEFYR---KRPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG 93 (124)
Q Consensus 20 ~~~~~~~v~--~~~~~iLl~~r~~~---~~~~w~~PgG~~~~g-Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 93 (124)
+.+++++.+ ++++.+|+.+|+.. ..|.|+||||.+|++ |++++||+||++||||++......++.........+
T Consensus 30 ~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~ 109 (190)
T PRK10707 30 RQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTG 109 (190)
T ss_pred CCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCC
Confidence 334444444 34458888887533 678999999999985 689999999999999999887776665542212222
Q ss_pred cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 94 CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.....+++.. ........+++|..++.|+|
T Consensus 110 ~~~~~~v~~~-~~~~~~~~d~~Ev~~v~~vp 139 (190)
T PRK10707 110 YQVTPVVGII-PPDLPYRANEDEVAAVFEMP 139 (190)
T ss_pred cEEEEEEEEE-CCCCCCCCChhhhheEEEEe
Confidence 2222222222 22223445677888999986
No 69
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.78 E-value=6.3e-18 Score=102.22 Aligned_cols=97 Identities=24% Similarity=0.270 Sum_probs=65.9
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV 101 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (124)
++.+++.++ +++||++++ .+.|++|||++++||++++||+||++||+|+++.....+........ . ......+|
T Consensus 2 ~v~vi~~~~-~~vLl~~~~---~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~-~-~~~~~~~y 75 (118)
T cd04665 2 SVLVICFYD-DGLLLVRHK---DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLF-E-SGFETLVY 75 (118)
T ss_pred EEEEEEEEC-CEEEEEEeC---CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCC-C-CcEEEEEE
Confidence 345555665 789999884 46899999999999999999999999999999876666665432221 1 22233334
Q ss_pred EeccCCccCCCCcccccceeecC
Q psy9980 102 RLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 102 ~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.+............|+....|++
T Consensus 76 ~a~~~~~~~~~~~~E~~~~~~~~ 98 (118)
T cd04665 76 PAVSAQLEEKASYLETDGPVLFK 98 (118)
T ss_pred EEEEEecccccccccccCcEEec
Confidence 33333333223456777887764
No 70
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.75 E-value=2.5e-17 Score=106.51 Aligned_cols=108 Identities=14% Similarity=0.134 Sum_probs=70.9
Q ss_pred cceeeeEEE--EEEcCC--CcEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccce---eEEEe
Q psy9980 17 AHTMIGAGA--VVLNDK--NQVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFHS---VVAFR 85 (124)
Q Consensus 17 ~~~~~~~~~--~v~~~~--~~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~---~~~~~ 85 (124)
...+.++.+ ++.|++ ++++++||+.. ++|.|+ +|+|++++||++++||+||++||||+++.... .++..
T Consensus 29 g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~ 108 (180)
T cd03676 29 GLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVV 108 (180)
T ss_pred CceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEE
Confidence 344455554 455654 78999999544 899996 89999999999999999999999999887433 22211
Q ss_pred -ecccCCcC--cccEEEEEEeccC-CccCCCCcccccceeecC
Q psy9980 86 -HTHKAAFG--CSDIYFIVRLKPL-TQEITKDDREITESKWMD 124 (124)
Q Consensus 86 -~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~e~~~~~W~~ 124 (124)
+.+..... ...+.++|.+... ...+..+++|+.++.|++
T Consensus 109 ~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~ 151 (180)
T cd03676 109 SYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLT 151 (180)
T ss_pred EEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEEC
Confidence 11110111 2234444544322 223445678999999986
No 71
>PLN02709 nudix hydrolase
Probab=99.72 E-value=1.1e-16 Score=105.51 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=65.1
Q ss_pred cEEEEEecCC---CCCCeeccceeecCCC-CHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEE-EEEEecc-C
Q psy9980 33 QVLVVKEFYR---KRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY-FIVRLKP-L 106 (124)
Q Consensus 33 ~iLl~~r~~~---~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 106 (124)
.+||.+|+.. .+|.|+||||+++++| ++.+||+||+.||+|+.....++++....+.... ...+. ++..... .
T Consensus 52 ~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~s-g~~V~P~V~~~~~~~ 130 (222)
T PLN02709 52 RVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKK-GMSVAPVIGFLHDKK 130 (222)
T ss_pred EEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCC-CCEEEEEEEEecCCC
Confidence 7999999654 7899999999999974 7999999999999999988777777654432222 22222 2333322 1
Q ss_pred CccCCCCcccccceeecC
Q psy9980 107 TQEITKDDREITESKWMD 124 (124)
Q Consensus 107 ~~~~~~~~~e~~~~~W~~ 124 (124)
...+.++++|+.++.|+|
T Consensus 131 ~~~~~~np~EV~~vf~vP 148 (222)
T PLN02709 131 AFKPLPNPAEVEEIFDVP 148 (222)
T ss_pred CccccCChhhhheeEEec
Confidence 223345778999999986
No 72
>KOG3084|consensus
Probab=99.72 E-value=2.8e-18 Score=116.12 Aligned_cols=109 Identities=25% Similarity=0.322 Sum_probs=78.3
Q ss_pred CCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980 13 IPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA 91 (124)
Q Consensus 13 ~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~ 91 (124)
...+++....+.+++.+.+++.+|..|+.+ .+|.|..++|++++|||+++||+||++||+|+++..+.+.... +..
T Consensus 180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQ---PWP 256 (345)
T KOG3084|consen 180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQ---PWP 256 (345)
T ss_pred CeeccCCCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecC---CCC
Confidence 445777888888888887776666555444 7899999999999999999999999999999999877655432 222
Q ss_pred cCcccEEEEEE-eccCCccCCCCcc-cccceeecC
Q psy9980 92 FGCSDIYFIVR-LKPLTQEITKDDR-EITESKWMD 124 (124)
Q Consensus 92 ~~~~~~~~~~~-~~~~~~~~~~~~~-e~~~~~W~~ 124 (124)
.....+++.+. +....+++..+.+ |..+.+||+
T Consensus 257 ~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~ 291 (345)
T KOG3084|consen 257 LMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFD 291 (345)
T ss_pred CCchHHHHHHHHHHhhCCccccCcchhhhhccccc
Confidence 12333333332 2223356666666 889999985
No 73
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.70 E-value=3.3e-16 Score=102.75 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=49.2
Q ss_pred eeEEEEEEcC-CCcEEEEEe-cCC-C-----CCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE
Q psy9980 21 IGAGAVVLND-KNQVLVVKE-FYR-K-----RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83 (124)
Q Consensus 21 ~~~~~~v~~~-~~~iLl~~r-~~~-~-----~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~ 83 (124)
-++.++.+++ +++++|+++ ++. . +-.|++|+|.+++||++++||+|||.||||+++.....+.
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~ 120 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVL 120 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEE
Confidence 4566676764 468888888 443 2 2468999999999999999999999999999987544443
No 74
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.70 E-value=2.3e-16 Score=102.27 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=50.9
Q ss_pred eeeEEEEEEcC-CCcEEEEEe-cCC------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980 20 MIGAGAVVLND-KNQVLVVKE-FYR------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84 (124)
Q Consensus 20 ~~~~~~~v~~~-~~~iLl~~r-~~~------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~ 84 (124)
..++++++++. ++++||+++ +.. .+..|++|+|++++||++++||+||++||||+++.....+..
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~ 116 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLS 116 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEE
Confidence 34666777764 468999987 322 246789999999999999999999999999999876555443
No 75
>PRK08999 hypothetical protein; Provisional
Probab=99.70 E-value=3.8e-16 Score=108.66 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=66.2
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
...+++++.++++++||+||... ++|.|+||||++++||++.+|+.||+.||+|+++.....+....+. ..... ..
T Consensus 5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~-~~~~~-~~ 82 (312)
T PRK08999 5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHD-YPDKR-VR 82 (312)
T ss_pred eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEE-cCCCe-EE
Confidence 44555666776689999999544 7899999999999999999999999999999987654433332221 11111 12
Q ss_pred EEEEEeccCCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..+|.+....+. ....|..+++|++
T Consensus 83 i~~y~~~~~~~~--~~~~e~~~~~Wv~ 107 (312)
T PRK08999 83 LDVRRVTAWQGE--PHGREGQPLAWVA 107 (312)
T ss_pred EEEEEEEEecCc--ccCccCCccEEec
Confidence 223333222222 2234567778875
No 76
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.68 E-value=1.1e-15 Score=102.53 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=71.2
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCCCC-----------------HHHHHHHHHHHHhccC
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMSED-----------------IGEAAVREVFEETNIR 75 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~gEs-----------------~~~aa~RE~~EE~Gl~ 75 (124)
...+.++.++|+|.+|++||+||+.. ++|.|+.. +|++..||+ ..+||+||+.|||||+
T Consensus 53 gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~ 132 (247)
T PLN02552 53 GLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP 132 (247)
T ss_pred CceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence 45677899999998899999999543 89999876 677666532 6789999999999998
Q ss_pred ccc-----ceeEEEeecccCCc------C---cccEEEEEEec-cCCccCCCCcccccceeecC
Q psy9980 76 TEF-----HSVVAFRHTHKAAF------G---CSDIYFIVRLK-PLTQEITKDDREITESKWMD 124 (124)
Q Consensus 76 ~~~-----~~~~~~~~~~~~~~------~---~~~~~~~~~~~-~~~~~~~~~~~e~~~~~W~~ 124 (124)
+.. ..+++.+....... . ...+.+++... .....+.++++|+.+++|++
T Consensus 133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs 196 (247)
T PLN02552 133 AEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVN 196 (247)
T ss_pred ccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEe
Confidence 653 22333221111110 1 12222333222 23345677889999999985
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.67 E-value=1.5e-15 Score=92.47 Aligned_cols=51 Identities=27% Similarity=0.354 Sum_probs=40.3
Q ss_pred EEEEEEcCCC--cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980 23 AGAVVLNDKN--QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 23 ~~~~v~~~~~--~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
+.+++.+.++ ++|+.+.. .+.|.+|||.+++||++.+||.||+.||||+++
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~---~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHP---LAGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcC---CCcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 4555555443 55555553 356999999999999999999999999999987
No 78
>PLN02791 Nudix hydrolase homolog
Probab=99.65 E-value=1.5e-15 Score=114.75 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=74.2
Q ss_pred cceeeeEEEEEEcC-CCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEee-cc
Q psy9980 17 AHTMIGAGAVVLND-KNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRH-TH 88 (124)
Q Consensus 17 ~~~~~~~~~~v~~~-~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~-~~ 88 (124)
...+.++.+++++. ++++||+||+.. ++|.|++ +|||++.||++.+||+||+.||+||.+... .++.... ..
T Consensus 29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~ 108 (770)
T PLN02791 29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQEC 108 (770)
T ss_pred CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEe
Confidence 34677889999985 589999999543 8999999 799999999999999999999999987533 2222211 11
Q ss_pred ---cCCcCcccEEEEEEec--cC--CccCCCCcccccceeecC
Q psy9980 89 ---KAAFGCSDIYFIVRLK--PL--TQEITKDDREITESKWMD 124 (124)
Q Consensus 89 ---~~~~~~~~~~~~~~~~--~~--~~~~~~~~~e~~~~~W~~ 124 (124)
........++.+|.+. .. ...+.++++|+.+++|++
T Consensus 109 ~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvs 151 (770)
T PLN02791 109 VINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMS 151 (770)
T ss_pred eccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEc
Confidence 1111122233333322 11 124566889999999985
No 79
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.65 E-value=3.2e-15 Score=94.07 Aligned_cols=61 Identities=30% Similarity=0.297 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH 86 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~ 86 (124)
.+.+++..+ +++||.++. ...|++|||++++|||+++||+||++||||+.+....+++...
T Consensus 26 ~V~ii~~~~-~~~LL~~~~---~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~ 86 (156)
T TIGR02705 26 HVLVIPRYK-DQWLLTEHK---RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYE 86 (156)
T ss_pred EEEEEEEEC-CEEEEEEEc---CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEE
Confidence 455555555 588888874 3569999999999999999999999999999988777776543
No 80
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.65 E-value=4.4e-15 Score=96.68 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=62.9
Q ss_pred eeeeEEEEEEcC-CCcEEEEEe-cCC-------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980 19 TMIGAGAVVLND-KNQVLVVKE-FYR-------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK 89 (124)
Q Consensus 19 ~~~~~~~~v~~~-~~~iLl~~r-~~~-------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~ 89 (124)
..-+++++++++ +++++|+++ +.. .+-.|++|+|.+++| ++++||+||+.||||+.+.....+......+
T Consensus 44 ~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~sp 122 (191)
T PRK15009 44 RGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSP 122 (191)
T ss_pred ECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCC
Confidence 344666777774 568999888 443 223578999999976 6999999999999999987554444332222
Q ss_pred CCcCcccEEEEEEeccC--CccCCCCcccccceeecC
Q psy9980 90 AAFGCSDIYFIVRLKPL--TQEITKDDREITESKWMD 124 (124)
Q Consensus 90 ~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~ 124 (124)
...+...+.|+...... .......++|..++.|+|
T Consensus 123 G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~ 159 (191)
T PRK15009 123 GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELP 159 (191)
T ss_pred cccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEc
Confidence 22222222222222111 111122456667787875
No 81
>KOG0648|consensus
Probab=99.58 E-value=2.1e-15 Score=102.14 Aligned_cols=122 Identities=51% Similarity=0.775 Sum_probs=99.3
Q ss_pred cccCCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980 2 TKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~ 78 (124)
..|++... ...|......+.+.++++|.++++|+++-.+. ..|.|-+|+|.++++|++.++|+||++||||++...
T Consensus 98 ~~Wl~e~~-~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef 176 (295)
T KOG0648|consen 98 TSWLREAP-STLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEF 176 (295)
T ss_pred eeeecccc-ccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhh
Confidence 45787775 67777888999999999998789999986444 789999999999999999999999999999997766
Q ss_pred ceeEEEeecccCCcC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 79 HSVVAFRHTHKAAFG--CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 79 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..++.....+..... ..++++++.....+-....+..|+..++|++
T Consensus 177 ~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp 224 (295)
T KOG0648|consen 177 VEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMP 224 (295)
T ss_pred hhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhccc
Confidence 666666655544444 6678888888777767777777888888885
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.56 E-value=6.3e-14 Score=90.55 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=37.5
Q ss_pred cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980 33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
++|+++|+. .|.|.||||++++||++.+||+||+.||||+.+
T Consensus 50 ~vLl~~r~~--~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 50 QFVAIKRPD--SGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred EEEEEEeCC--CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 678888853 589999999999999999999999999997654
No 83
>PLN03143 nudix hydrolase; Provisional
Probab=99.55 E-value=6.8e-14 Score=95.83 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=43.7
Q ss_pred eEEEEEE-cCCCc--EEEEEe-cCC-CCCCeeccceeecCC-CCHHHHHHHHHHHHhccCcccc
Q psy9980 22 GAGAVVL-NDKNQ--VLVVKE-FYR-KRPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTEFH 79 (124)
Q Consensus 22 ~~~~~v~-~~~~~--iLl~~r-~~~-~~~~w~~PgG~~~~g-Es~~~aa~RE~~EE~Gl~~~~~ 79 (124)
++++++. +.+++ ++|+++ +.+ .+-.|+||+|.+|++ |++++||+||++||||+.+...
T Consensus 130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~ 193 (291)
T PLN03143 130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLE 193 (291)
T ss_pred eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccc
Confidence 4444443 43344 777777 444 566899999999984 8999999999999999987543
No 84
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.54 E-value=9e-14 Score=86.06 Aligned_cols=63 Identities=33% Similarity=0.450 Sum_probs=47.7
Q ss_pred eEEEEEEcCC-CcEEEEEecCCCCCCeeccceeecCCCCHHH-HHHHHHHHHhccCcc--cceeEEEe
Q psy9980 22 GAGAVVLNDK-NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGE-AAVREVFEETNIRTE--FHSVVAFR 85 (124)
Q Consensus 22 ~~~~~v~~~~-~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~-aa~RE~~EE~Gl~~~--~~~~~~~~ 85 (124)
++.+++.... +++|+.+|+... +.|.+|||++++||++.+ ||+||++||||+++. ........
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~-~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~ 79 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG-GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEF 79 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC-CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeec
Confidence 4444444433 688998886533 699999999999998888 999999999999987 44444443
No 85
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.49 E-value=7.7e-14 Score=87.60 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=79.4
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccceeEEE--eecc----
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF--RHTH---- 88 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~---- 88 (124)
-+.+.+++++|.+|++|++||+.. |++.|.- .+||.-+|||..+|++|.+..|+||.+.......+ ...|
T Consensus 32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~ 111 (185)
T COG1443 32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAAD 111 (185)
T ss_pred HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccC
Confidence 477899999999999999999544 9999986 58999999999999999999999999873222221 1122
Q ss_pred cCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 89 KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
........+++++.+...+ .+.++++|+++++|++
T Consensus 112 ~~~~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~ 146 (185)
T COG1443 112 PDGIVENEICPVLAARLDS-ALDPNPDEVMDYRWVS 146 (185)
T ss_pred CCCcceeeeeeEEEEeecC-CCCCChHHhhheeccC
Confidence 1122233477777766665 6677889999999985
No 86
>KOG2839|consensus
Probab=99.49 E-value=1.1e-13 Score=84.58 Aligned_cols=66 Identities=30% Similarity=0.458 Sum_probs=52.1
Q ss_pred eeeeEEEEEEc-CCC--cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980 19 TMIGAGAVVLN-DKN--QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR 85 (124)
Q Consensus 19 ~~~~~~~~v~~-~~~--~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~ 85 (124)
.+..++|+.+. .+. ++||+..++ .+..|.+|+|++++|||..+||.||+.||.|+.-....++..+
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~-~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~ 76 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSK-KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGF 76 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCC-CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccch
Confidence 44555566665 323 789998854 4689999999999999999999999999999988777655444
No 87
>KOG3069|consensus
Probab=99.29 E-value=1.8e-11 Score=80.40 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=61.3
Q ss_pred cEEEEEecCC---CCCCeeccceeecCCC-CHHHHHHHHHHHHhccCcccceeEEEeecccCCcC-cccEEEEEEeccC-
Q psy9980 33 QVLVVKEFYR---KRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG-CSDIYFIVRLKPL- 106 (124)
Q Consensus 33 ~iLl~~r~~~---~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 106 (124)
.+||.||... +.|.-.||||..|+.+ |-..+|.||+.||.|++.....+++.........+ ...-+..+.....
T Consensus 59 ~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~ 138 (246)
T KOG3069|consen 59 SVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKKI 138 (246)
T ss_pred EEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecccc
Confidence 6888888433 8899999999999964 78899999999999999865555554332222211 1111222222221
Q ss_pred CccCCCCcccccceeecC
Q psy9980 107 TQEITKDDREITESKWMD 124 (124)
Q Consensus 107 ~~~~~~~~~e~~~~~W~~ 124 (124)
-....++.+|+.++.|+|
T Consensus 139 l~~~~ln~gEv~~~F~VP 156 (246)
T KOG3069|consen 139 LPSLRLNSGEVESAFWVP 156 (246)
T ss_pred cccccCCchheeeeeeee
Confidence 144566788999999986
No 88
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.26 E-value=9.4e-11 Score=70.36 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=43.4
Q ss_pred eeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhcc
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl 74 (124)
..+++++.+ ++++||.||... ++|+|+||+|.++.+++.+++..|++.++.++
T Consensus 4 ~~~~~ii~~-~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~ 58 (118)
T cd03431 4 GIAVVVIRN-DGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL 58 (118)
T ss_pred EEEEEEEec-CCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence 344555544 579999999654 89999999999999999999999999888764
No 89
>KOG3041|consensus
Probab=99.22 E-value=2.8e-10 Score=73.00 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=42.6
Q ss_pred eeEEEEEEc-CCCcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 21 IGAGAVVLN-DKNQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 21 ~~~~~~v~~-~~~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
+++.+++-. +.-.++|+++ +.+ ++=..++|+|-+|.||+++.||+||++||||+.-+
T Consensus 76 VaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk 135 (225)
T KOG3041|consen 76 VAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK 135 (225)
T ss_pred EEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccce
Confidence 344444433 2226778877 443 55667899999999999999999999999999844
No 90
>PLN02839 nudix hydrolase
Probab=98.92 E-value=1.4e-08 Score=71.41 Aligned_cols=95 Identities=17% Similarity=0.075 Sum_probs=62.2
Q ss_pred CCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcc---cceeEEEeecccCCc--CcccEEEE
Q psy9980 30 DKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTE---FHSVVAFRHTHKAAF--GCSDIYFI 100 (124)
Q Consensus 30 ~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~---~~~~~~~~~~~~~~~--~~~~~~~~ 100 (124)
++.++++.||... ++|.|+. .+|.+..||++.++++||+.||.||... ...-.+...+..... -...+.|+
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~ 295 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFC 295 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEE
Confidence 4457889998433 8999984 6999999999999999999999999754 122222222221111 12335555
Q ss_pred EEeccCCc-cCCCCcccccceeecC
Q psy9980 101 VRLKPLTQ-EITKDDREITESKWMD 124 (124)
Q Consensus 101 ~~~~~~~~-~~~~~~~e~~~~~W~~ 124 (124)
|....... .+..+++|+.++.+++
T Consensus 296 YDLeLP~df~P~~qDGEVe~F~Lm~ 320 (372)
T PLN02839 296 YDLELPQDFVPKNQDGEVESFKLIP 320 (372)
T ss_pred eeeecCCccccCCCccceeEEEEec
Confidence 55544432 2355778888888764
No 91
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.83 E-value=1.1e-08 Score=61.36 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=33.1
Q ss_pred EEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc
Q psy9980 25 AVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79 (124)
Q Consensus 25 ~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~ 79 (124)
+++.+.+|++||.||... ++|+|+||.-..+...+ .+.+.+.+.+..|+.+...
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~ 57 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV 57 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh
Confidence 566666689999999665 99999999988874334 5555666767888876543
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.69 E-value=3.8e-08 Score=59.13 Aligned_cols=58 Identities=29% Similarity=0.337 Sum_probs=44.0
Q ss_pred eeeEEEEEEc-CCC--cEEEEEecCC-----CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 20 MIGAGAVVLN-DKN--QVLVVKEFYR-----KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 20 ~~~~~~~v~~-~~~--~iLl~~r~~~-----~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
..++.++++. ..| .+||++--.+ ..|-|++|.|....||++..||+||+.||+||.+.
T Consensus 3 K~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 3 KLSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred cccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 3456666665 323 4555554222 35889999999999999999999999999999875
No 93
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=98.22 E-value=1.7e-05 Score=49.88 Aligned_cols=101 Identities=16% Similarity=0.265 Sum_probs=62.4
Q ss_pred eEEEEEEcCCCcEEEEEecCC-----CCCCeec-cceeecCCC---CHHH----HHHHHHHHHhccCcc---cceeEEEe
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR-----KRPQWKL-PGGYVEMSE---DIGE----AAVREVFEETNIRTE---FHSVVAFR 85 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~-----~~~~w~~-PgG~~~~gE---s~~~----aa~RE~~EE~Gl~~~---~~~~~~~~ 85 (124)
--++++.+. +++|+.+|-.+ ..|++++ .|||++.++ |..+ .+.||+.||+++.-. ...+++..
T Consensus 63 IpYvvi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlI 141 (203)
T COG4112 63 IPYVVIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLI 141 (203)
T ss_pred ccEEEEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeee
Confidence 345666666 59999999543 4677777 499999875 3322 478999999999843 45556554
Q ss_pred ecccCCcCcccEEEEEEeccCCccCCCCcccccceeec
Q psy9980 86 HTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWM 123 (124)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~ 123 (124)
......-+..++-.++..............+.-.++|+
T Consensus 142 Ndd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwi 179 (203)
T COG4112 142 NDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWI 179 (203)
T ss_pred cCCCcccceEEEEEEEEeeccccceeeeecceeeeeee
Confidence 33333333444555555544443333334455667776
No 94
>KOG4195|consensus
Probab=98.18 E-value=3.3e-06 Score=55.48 Aligned_cols=39 Identities=31% Similarity=0.541 Sum_probs=34.4
Q ss_pred cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhc
Q psy9980 33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETN 73 (124)
Q Consensus 33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~G 73 (124)
+++.+||. ..+.|.+|||-+++||-.-.+.+||+.||.=
T Consensus 140 e~vavkr~--d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRP--DNGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecC--CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 56777885 4799999999999999999999999999874
No 95
>KOG0142|consensus
Probab=98.06 E-value=9.6e-06 Score=52.59 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=67.0
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceee-------cC--CCCHHHHHHHHHHHHhccCccc-----c
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYV-------EM--SEDIGEAAVREVFEETNIRTEF-----H 79 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~-------~~--gEs~~~aa~RE~~EE~Gl~~~~-----~ 79 (124)
.-+.+..+++++.++++||+||+.. +++.|.-- ++|. +. +.....||+|-+.-|+||.... .
T Consensus 50 lLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~ 129 (225)
T KOG0142|consen 50 LLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF 129 (225)
T ss_pred hhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence 3456889999998899999999655 78888632 2222 11 2357889999999999998652 3
Q ss_pred eeEEEeecccCC---cCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 80 SVVAFRHTHKAA---FGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 80 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
++++..++.... .+.+.+.|+..... .-.+.++++|+.+++|++
T Consensus 130 ~~ltrihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs 176 (225)
T KOG0142|consen 130 NFLTRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVS 176 (225)
T ss_pred ccceeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheec
Confidence 455544333222 22333443333332 223445668888888874
No 96
>KOG2937|consensus
Probab=97.60 E-value=8.9e-06 Score=56.39 Aligned_cols=57 Identities=30% Similarity=0.551 Sum_probs=45.2
Q ss_pred eeeeEEEEEEc-CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 19 TMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 19 ~~~~~~~~v~~-~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
......+.++| ...++||++... ...|.||-|++..+|+..+||+||+.||+|.+.+
T Consensus 81 ~iPv~ga~ild~~~sr~llv~g~q--a~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 81 RIPVRGAIILDEKRSRCLLVKGWQ--ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CCCCchHhhhhhhhhhhheeecee--cccccccCccccccchhhhcchhcccchhhcCHH
Confidence 34455666777 334788887732 3459999999999999999999999999999886
No 97
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.46 E-value=0.0006 Score=44.21 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=30.5
Q ss_pred cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980 33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
.+||.|.. ...+.+|||.+.+||+..++.+|.+.+-+|..-
T Consensus 59 HvLLLq~~---~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 59 HVLLLQIG---NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp EEEEEEET---TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred EEEEEecc---CccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 68888873 458999999999999999999999999999764
No 98
>PRK10880 adenine DNA glycosylase; Provisional
Probab=96.95 E-value=0.0028 Score=45.22 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=30.8
Q ss_pred eeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccC
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR 75 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~ 75 (124)
....++++..++++|+.||... ++|+|+||.. +. + + ..++..|+.|+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~-~---~-~~~~~~~~~~~~ 280 (350)
T PRK10880 231 RTGYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--AD-E---E-ELRQWLAQRGIA 280 (350)
T ss_pred EEEEEEEEEECCEEEEEECCccChhhccccCCCC--cc-h---h-hHHHHHHhcCCc
Confidence 3444444444579999999654 9999999963 21 1 1 245566778875
No 99
>KOG4313|consensus
Probab=96.90 E-value=0.0024 Score=43.07 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=42.8
Q ss_pred EEEEEEcCC-C--cEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 23 AGAVVLNDK-N--QVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 23 ~~~~v~~~~-~--~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
+-..+.++. + ++.+.||+.. |+|.|+- .+|.+..|-+..++|++|..||..+...
T Consensus 136 ingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~ 197 (306)
T KOG4313|consen 136 INGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSD 197 (306)
T ss_pred eeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchh
Confidence 334455532 2 6778888433 9999984 6999999999999999999999999874
No 100
>KOG4432|consensus
Probab=96.71 E-value=0.0029 Score=43.79 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=48.8
Q ss_pred cceeeeEEEEEEcCC-CcEEEEEecCC----------------CCCCe-----------eccceeecCCCCHHHHHHHHH
Q psy9980 17 AHTMIGAGAVVLNDK-NQVLVVKEFYR----------------KRPQW-----------KLPGGYVEMSEDIGEAAVREV 68 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~-~~iLl~~r~~~----------------~~~~w-----------~~PgG~~~~gEs~~~aa~RE~ 68 (124)
.+..-++.+++++.+ .++|++++-.+ ..-.| ++.+|-++.+-|+.+-|..|+
T Consensus 23 ~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev 102 (405)
T KOG4432|consen 23 NQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEV 102 (405)
T ss_pred HhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHH
Confidence 344456777777743 36777765211 11123 355899999999999999999
Q ss_pred HHHhccCcccceeEEEee
Q psy9980 69 FEETNIRTEFHSVVAFRH 86 (124)
Q Consensus 69 ~EE~Gl~~~~~~~~~~~~ 86 (124)
.||+|.++....+..+..
T Consensus 103 ~eecgy~v~~d~l~hv~~ 120 (405)
T KOG4432|consen 103 AEECGYRVDPDDLIHVIT 120 (405)
T ss_pred HHHhCCcCChhHceEEEE
Confidence 999999998766665543
No 101
>KOG1689|consensus
Probab=96.51 E-value=0.0087 Score=38.15 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=34.5
Q ss_pred cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhcc
Q psy9980 33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74 (124)
Q Consensus 33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl 74 (124)
.+||.|- +.-.+.+|||.+++||+-.+...|-+.|-+|-
T Consensus 85 HvLLLQi---g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 85 HVLLLQI---GNTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred eEEEEee---CCEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 6788777 45678899999999999999999999999993
No 102
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=96.18 E-value=0.023 Score=39.35 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=22.7
Q ss_pred EEEEEEcCCCcEEEEEecCC--CCCCeeccce
Q psy9980 23 AGAVVLNDKNQVLVVKEFYR--KRPQWKLPGG 52 (124)
Q Consensus 23 ~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG 52 (124)
.++++.++++++|+.||... ++|+|+||+.
T Consensus 230 ~~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 230 YFLVLQNYDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred EEEEEEeCCCeEEEEeCCCCchhhccccCCCC
Confidence 44444555689999999654 8999999974
No 103
>KOG4548|consensus
Probab=96.07 E-value=0.039 Score=37.38 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=37.6
Q ss_pred CcEEEEEecCCCCCCeeccceee-cCCCCHHHHHHHHHHHHhccCc
Q psy9980 32 NQVLVVKEFYRKRPQWKLPGGYV-EMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 32 ~~iLl~~r~~~~~~~w~~PgG~~-~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
.-+||++|+-+..+.|.||.+.. +.+++...+|.|.|..-.|=..
T Consensus 139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK 184 (263)
T ss_pred eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchh
Confidence 35788887655678999999999 8899999999999999888543
No 104
>KOG4432|consensus
Probab=95.34 E-value=0.17 Score=35.44 Aligned_cols=32 Identities=31% Similarity=0.179 Sum_probs=26.5
Q ss_pred ccceeecCCCCHHHHHHHHHHHHhccCcccce
Q psy9980 49 LPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80 (124)
Q Consensus 49 ~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~ 80 (124)
+..|.++..-|..+-|.||..||+|.++...+
T Consensus 288 Lcag~Vd~p~s~~e~a~~e~veecGYdlp~~~ 319 (405)
T KOG4432|consen 288 LCAGRVDDPFSDPEKAARESVEECGYDLPEDS 319 (405)
T ss_pred eecccCCCCcccHHHHHHHHHHHhCCCCCHHH
Confidence 33678888788899999999999999998543
No 105
>PRK13910 DNA glycosylase MutY; Provisional
Probab=94.94 E-value=0.055 Score=37.78 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCcEEEEEecCC-CCCCeeccce
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGG 52 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG 52 (124)
....+++.+ ++++||.||..+ ++|+|+||+.
T Consensus 187 ~~~~~~~~~-~~~~ll~kr~~~l~~gl~~fP~~ 218 (289)
T PRK13910 187 ERYLGVVIQ-NNQIALEKIEQKLYLGMHHFPNL 218 (289)
T ss_pred EEEEEEEEE-CCEEEEEECCCchhcccccCCCC
Confidence 334444444 468999998544 9999999963
No 106
>PF14443 DBC1: DBC1
Probab=93.82 E-value=0.6 Score=28.49 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=33.3
Q ss_pred cEEEEEecCC---CCCCeecc--ceeecCCC-CHHHHHHHHHHHHhccCcc
Q psy9980 33 QVLVVKEFYR---KRPQWKLP--GGYVEMSE-DIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 33 ~iLl~~r~~~---~~~~w~~P--gG~~~~gE-s~~~aa~RE~~EE~Gl~~~ 77 (124)
++|+.++... -+|.|+.- ||-...+- .+..+|+|=+++-||++++
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 4666666333 57888754 66666543 5789999999999999987
No 107
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=92.77 E-value=0.35 Score=34.52 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCcceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecC
Q psy9980 15 NYAHTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEM 56 (124)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~ 56 (124)
...++....+.++.+.++.+++.+|... +.|.|+||......
T Consensus 230 k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 230 KKKLPRRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred ccccchheeeEEEEccCcchhhhhCcccCceecccccccccccc
Confidence 3344456677777777789999999655 89999999876554
No 108
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=88.70 E-value=0.49 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=12.3
Q ss_pred ceeecCCCCHHHHHHHHHHHHhc
Q psy9980 51 GGYVEMSEDIGEAAVREVFEETN 73 (124)
Q Consensus 51 gG~~~~gEs~~~aa~RE~~EE~G 73 (124)
||-..+|--+...+.||+.||+-
T Consensus 15 ggLasPgPvp~~~alkELIeELv 37 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEELV 37 (43)
T ss_dssp --------S-HHHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHHH
Confidence 67777888788889999999974
No 109
>KOG2937|consensus
Probab=81.53 E-value=0.64 Score=33.00 Aligned_cols=67 Identities=22% Similarity=0.504 Sum_probs=44.6
Q ss_pred CCCCCCcceeeeEEEEEEc-CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 11 SRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 11 ~~~~~~~~~~~~~~~~v~~-~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
++.+.....+.....+..+ ..+....++-...-+..|.||.|.+.-||...++++++..||+|+...
T Consensus 229 ak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 229 AKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred hcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 3444444444444444555 222233333322256788999999999999999999999999999765
No 110
>PF12860 PAS_7: PAS fold
Probab=70.96 E-value=2.5 Score=24.69 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=33.5
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHH
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVR 66 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~R 66 (124)
+..+++++|.++++++.-++ ....|.+|...+.+|-+..+.+.+
T Consensus 4 l~~Gv~v~D~~~rl~~~N~~--~~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 4 LPQGVAVFDSDGRLVFWNQR--FRELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred cCceEEEEcCCCeEEeEcHH--HHHHhCCCHHHhcCCCCHHHHHHH
Confidence 45678999988888888775 467888888888888776665543
No 111
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=68.23 E-value=38 Score=23.62 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=39.6
Q ss_pred EEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHH-HHHHhccCcc-cceeEEEeecccCCcCcccEEEEEE
Q psy9980 25 AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVRE-VFEETNIRTE-FHSVVAFRHTHKAAFGCSDIYFIVR 102 (124)
Q Consensus 25 ~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE-~~EE~Gl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (124)
+.|.+++-++|-+..- . .+|.|-.++.--..++-.|. +.+.|+..+. .+++.++............+..+-+
T Consensus 30 vAv~~~~p~VLtV~q~---~---aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~R~~~~g~rvisv~Y 103 (322)
T COG4111 30 VAVTDGGPRVLTVRQG---A---ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRDRRNEGGMRVISVSY 103 (322)
T ss_pred EEEcCCCceEEEeccc---c---cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhccccccCcCCceEEEEEE
Confidence 3334443466666652 2 28999888875444555554 4677887776 5666665443322223334443433
No 112
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=60.81 E-value=9.4 Score=20.02 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=12.5
Q ss_pred CCCCeeccceeecCCC
Q psy9980 43 KRPQWKLPGGYVEMSE 58 (124)
Q Consensus 43 ~~~~w~~PgG~~~~gE 58 (124)
..+-|-+|||.+-.+-
T Consensus 20 ~~~GWl~Pgg~vi~NP 35 (60)
T PF07026_consen 20 FKNGWLMPGGKVITNP 35 (60)
T ss_pred ccceeecCCCeeEcCH
Confidence 3567999999998764
No 113
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=60.19 E-value=34 Score=20.28 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=31.6
Q ss_pred EEEEEEcCCCcEEEEEecCCCCCCe-ecc----------ce-ee--cCCCCHHHHHHHHHHHHhccCcc
Q psy9980 23 AGAVVLNDKNQVLVVKEFYRKRPQW-KLP----------GG-YV--EMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 23 ~~~~v~~~~~~iLl~~r~~~~~~~w-~~P----------gG-~~--~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
+..+.+.+.+++++-++.. .+-.| +-| .| ++ ..|+++.+...+|+.+.+|..+.
T Consensus 40 VLti~~~~~~~~VINkQ~p-~~QIWlsSpisG~~hf~~~~~~W~~~r~g~~l~~~L~~el~~~~g~~v~ 107 (109)
T PF01491_consen 40 VLTIEFPDGGQYVINKQPP-NRQIWLSSPISGPFHFDYDDGKWIDTRDGEELFELLEEELSQQLGEPVD 107 (109)
T ss_dssp EEEEEETTSEEEEEEEECC-CTEEEEEETTTEEEEEEEESSSEEETTTTEBHHHHHHHHHHHHHTS---
T ss_pred EEEEEECCCCEEEEeCCCH-HHHHHHhcccCCceEEEEcCCEEEECCCCchHHHHHHHHHHHHhCCCee
Confidence 4444455545666666633 22333 334 22 33 24789999999999999998764
No 114
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=57.54 E-value=6.1 Score=28.36 Aligned_cols=24 Identities=38% Similarity=0.264 Sum_probs=18.9
Q ss_pred eecCCCCHHHHHHHHHHHHhccCc
Q psy9980 53 YVEMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 53 ~~~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
.++..+-.-+.+.||++||++|-+
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcce
Confidence 456666667889999999999843
No 115
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=55.25 E-value=11 Score=19.49 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=14.4
Q ss_pred CCCCeeccceeecC-CCCHHHHHHHHH
Q psy9980 43 KRPQWKLPGGYVEM-SEDIGEAAVREV 68 (124)
Q Consensus 43 ~~~~w~~PgG~~~~-gEs~~~aa~RE~ 68 (124)
|+....+|.|.-.. |...+++++.-+
T Consensus 26 WP~~~~vP~GW~~~~G~~sr~~Cl~~I 52 (54)
T PF03621_consen 26 WPAFRPVPAGWRAVFGPGSRQECLDYI 52 (54)
T ss_dssp EETTS---TTEEEEEEEE-HHHHHHHH
T ss_pred CcCCCCCCCCcceeeCCcCHHHHHHHH
Confidence 66677899998777 755555555434
No 116
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=48.61 E-value=6.9 Score=25.21 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=19.9
Q ss_pred ccCCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecC
Q psy9980 3 KWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFY 41 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~ 41 (124)
+|-.+...-..|.....-....++|+|.+|++|-.+|.-
T Consensus 55 qW~dnkL~i~~P~~~~ln~ptL~~IYD~~G~lLW~qr~v 93 (180)
T PF08918_consen 55 QWEDNKLTIEVPPNLDLNSPTLVLIYDENGKLLWRQRDV 93 (180)
T ss_dssp EEETTCEEE---TTHHTT-SEEEEEEETTS-EEEESS--
T ss_pred heeCCeeEEeCCCccCCCCCeEEEEEcCCCcEEEecCcc
Confidence 444444333333322223334679999999999998843
No 117
>PF13014 KH_3: KH domain
Probab=46.16 E-value=14 Score=17.62 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.4
Q ss_pred HHHHHHHHhccCcccce
Q psy9980 64 AVREVFEETNIRTEFHS 80 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~~~ 80 (124)
-++++++++|..+....
T Consensus 12 ~I~~I~~~tg~~I~i~~ 28 (43)
T PF13014_consen 12 TIKEIREETGAKIQIPP 28 (43)
T ss_pred HHHHHHHHhCcEEEECC
Confidence 47899999999876444
No 118
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.99 E-value=32 Score=19.35 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=25.9
Q ss_pred EcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980 28 LNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 28 ~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~ 78 (124)
+++++++.+-.-. |.-+.---+++..+|.++ +.||+ |+.|.+++.
T Consensus 34 L~dDde~aIfnI~----gT~Sy~V~Fl~~~~s~ee-v~~el-e~mga~in~ 78 (88)
T COG4009 34 LNDDDELAIFNIE----GTSSYYVVFLEEVESEEE-VEREL-EDMGAEINR 78 (88)
T ss_pred cCCCCcEEEEEec----CceeEEEEEEeccCCHHH-HHHHH-HHhCchhcc
Confidence 3444555554442 222222335677777776 56666 999998763
No 119
>PF14044 NETI: NETI protein
Probab=42.35 E-value=24 Score=18.43 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=16.3
Q ss_pred eecCCCCHHHHHHHHHHHHhccCc
Q psy9980 53 YVEMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 53 ~~~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
.++.+||..+|+.| ..+-|..+
T Consensus 3 eV~enETI~~CL~R--M~~eGY~P 24 (57)
T PF14044_consen 3 EVEENETISDCLAR--MKKEGYMP 24 (57)
T ss_pred eccCCCcHHHHHHH--HHHcCCCc
Confidence 36789999999999 34556644
No 120
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=41.02 E-value=30 Score=18.78 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.2
Q ss_pred ccceeecCCCCHHHHHHH
Q psy9980 49 LPGGYVEMSEDIGEAAVR 66 (124)
Q Consensus 49 ~PgG~~~~gEs~~~aa~R 66 (124)
.|...|..||+++.|..|
T Consensus 1 M~~v~V~ene~~d~ALrr 18 (67)
T COG0828 1 MPQVKVRENEPLDKALRR 18 (67)
T ss_pred CCeeeecCCChHHHHHHH
Confidence 367788888888776654
No 121
>smart00250 PLEC Plectin repeat.
Probab=40.65 E-value=22 Score=16.55 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=13.6
Q ss_pred cceeecC--CC--CHHHHHHHHH
Q psy9980 50 PGGYVEM--SE--DIGEAAVREV 68 (124)
Q Consensus 50 PgG~~~~--gE--s~~~aa~RE~ 68 (124)
-+|-+++ ++ |..+|+.|.+
T Consensus 10 ~~Giidp~t~~~lsv~eA~~~gl 32 (38)
T smart00250 10 IGGIIDPETGQKLSVEEALRRGL 32 (38)
T ss_pred eeEEEcCCCCCCcCHHHHHHcCC
Confidence 4677776 34 7888888865
No 122
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=40.34 E-value=79 Score=18.68 Aligned_cols=22 Identities=5% Similarity=-0.038 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHhccCcc
Q psy9980 56 MSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 56 ~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
.|+++.+...+|+.+-+|..+.
T Consensus 82 ~g~~L~~~L~~~~~~~~g~~v~ 103 (105)
T PRK00446 82 SGEEFWALLEEAATQQAGEPVS 103 (105)
T ss_pred CCcHHHHHHHHHHHHHcCCcee
Confidence 4789999999999999997654
No 123
>COG3251 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.91 E-value=71 Score=17.42 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=19.8
Q ss_pred CCCCeeccceeecCCCC-HHHHHHHHHH
Q psy9980 43 KRPQWKLPGGYVEMSED-IGEAAVREVF 69 (124)
Q Consensus 43 ~~~~w~~PgG~~~~gEs-~~~aa~RE~~ 69 (124)
|+..-++|+|.--.+++ ..+|++-=+.
T Consensus 26 WP~~~~iPaGW~~v~~~~sr~aCldyve 53 (71)
T COG3251 26 WPVFCAIPAGWRVVHEPGSREACLDYVE 53 (71)
T ss_pred chhccCCCccceeecccccHHHHHHHHH
Confidence 77777899999888874 5666665443
No 124
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=36.53 E-value=32 Score=18.90 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccCcc
Q psy9980 63 AAVREVFEETNIRTE 77 (124)
Q Consensus 63 aa~RE~~EE~Gl~~~ 77 (124)
+.++|.-||+|++..
T Consensus 58 ~LikeAv~ELgLDFs 72 (82)
T PF11212_consen 58 ALIKEAVEELGLDFS 72 (82)
T ss_pred HHHHHHHHHhCCcHH
Confidence 568899999999865
No 125
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=36.15 E-value=1.5e+02 Score=21.49 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=39.1
Q ss_pred CCCCcceeeeEEEEEEcCCCcEE-EEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 13 IPNYAHTMIGAGAVVLNDKNQVL-VVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 13 ~~~~~~~~~~~~~~v~~~~~~iL-l~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
|+..+.+-.++.++... |+++ .+-|++. | -.+.++.++.+.+.|.+ +-|+.|++-.
T Consensus 203 MeyL~G~EySVD~l~~~--G~viaaV~R~K~--G----~~q~l~~~~~l~e~a~~-l~~~~~l~g~ 259 (329)
T PF15632_consen 203 MEYLPGPEYSVDCLADE--GRVIAAVPRRKL--G----RRQVLENDEELIELARR-LAEAFGLDGL 259 (329)
T ss_pred ecCCCCCeEEEEEEecC--CEEEEEEEEEec--C----ceeEEEECHHHHHHHHH-HHHHhCCCce
Confidence 45666778888888877 4665 5555332 3 46777878888887766 8899998643
No 126
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=35.62 E-value=11 Score=24.95 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=43.6
Q ss_pred CCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecC--CCCHHHHHHHHHHHHhc
Q psy9980 7 DDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEM--SEDIGEAAVREVFEETN 73 (124)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~--gEs~~~aa~RE~~EE~G 73 (124)
+...|..=..+....+..+||.++. .++...+....+|+|-.-+|.+.| |-.+++--+++|.+-+.
T Consensus 65 e~d~C~ICsd~~Rd~~~icVVe~p~-Dv~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~ 132 (198)
T COG0353 65 ESDPCDICSDESRDKSQLCVVEEPK-DVLALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLA 132 (198)
T ss_pred CCCcCcCcCCcccCCceEEEEcchH-HHHHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHh
Confidence 3445555444444455666666653 444444433478999999999988 55788888888877766
No 127
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=33.27 E-value=28 Score=18.08 Aligned_cols=15 Identities=20% Similarity=0.682 Sum_probs=12.3
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
.+|+++|++|.++..
T Consensus 23 ~ik~I~~~tg~~I~i 37 (61)
T cd02393 23 TIKKIIEETGVKIDI 37 (61)
T ss_pred HHHHHHHHHCCEEEe
Confidence 478899999998763
No 128
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=30.94 E-value=1.2e+02 Score=17.84 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHhccCcc
Q psy9980 56 MSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 56 ~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
.|+++.+...+|+...+|..+.
T Consensus 80 ~g~~l~~~L~~~~~~~~g~~v~ 101 (102)
T TIGR03421 80 DGEELWALLARACSEQAGEPVV 101 (102)
T ss_pred CCcHHHHHHHHHHHHHhCCccc
Confidence 4789999999999999997653
No 129
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=30.91 E-value=1.9e+02 Score=20.17 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=26.5
Q ss_pred CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeE
Q psy9980 43 KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV 82 (124)
Q Consensus 43 ~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~ 82 (124)
.+.+|+||-|.. ...+.|.-.+.|-+|..+-+-..+
T Consensus 41 ErPLWDFpdGtL----a~REvAAYlvs~~lGw~~VPpTvl 76 (253)
T TIGR03843 41 ERPLWDFPDGTL----AGREVAAYLVSEALGWGLVPPTVL 76 (253)
T ss_pred ccccccCCCCch----HHHHHHHHHHHHHhCCCcCCCeee
Confidence 688999998866 346666777899999887644433
No 130
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=30.65 E-value=96 Score=16.77 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=22.7
Q ss_pred eecCCCCHHHHHHHHHHHHhccCcccceeEE
Q psy9980 53 YVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83 (124)
Q Consensus 53 ~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~ 83 (124)
.+++++|.. ...+.+.+.+|+.+....++.
T Consensus 15 ~v~~~~Tv~-~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 15 TTLSEDTVL-DLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EECCCCCHH-HHHHHHHHHHCCCHHHEEEEe
Confidence 355566666 478889999999888888885
No 131
>PRK07198 hypothetical protein; Validated
Probab=28.85 E-value=1.1e+02 Score=22.87 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=30.2
Q ss_pred cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhcc
Q psy9980 29 NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74 (124)
Q Consensus 29 ~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl 74 (124)
..++.+.+.|-+ -...|-|||-.-..|=+ +...+|-|+|+||=
T Consensus 159 ~~~g~~~vtk~a--v~pvwylpgva~rfg~~-e~~lrr~lfe~t~g 201 (418)
T PRK07198 159 LANGDVVVTKAA--IEPVWYLPGVAERFGVS-ETDLRRTLFEQTGG 201 (418)
T ss_pred cCCCcEEEEEee--ecccccccchHHHcCCC-HHHHHHHHHHHcCC
Confidence 345677777775 35789999865554422 45678999999994
No 132
>PHA03069 DNA-binding protein; Provisional
Probab=27.59 E-value=83 Score=18.86 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.3
Q ss_pred ceeeeEEEEEEc-CCCcEEEEEe
Q psy9980 18 HTMIGAGAVVLN-DKNQVLVVKE 39 (124)
Q Consensus 18 ~~~~~~~~~v~~-~~~~iLl~~r 39 (124)
.++..+.-+++| ++|++|+.|.
T Consensus 11 ~~~~~~~PFiint~eGryLVLKa 33 (119)
T PHA03069 11 DPKYFVSPFILNTDDGRYLVLKA 33 (119)
T ss_pred CCceeecceEEecCCCeEEEEEE
Confidence 445667777777 6579999987
No 133
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=26.92 E-value=1.4e+02 Score=17.54 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=32.8
Q ss_pred eEEEEEEcCCCcEEEEEecCC---------CCCCeeccceee---cCCCCHHHHHHHHHHHHhccCc
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR---------KRPQWKLPGGYV---EMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~---------~~~~w~~PgG~~---~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
.+.-+-+.+.+++++-|+... ++-.++.-.|.+ ..|+++.+...+|+.+-+|-.+
T Consensus 37 gVLti~f~~~~~~VINkQ~p~~QIWlaSp~G~~hf~~~~~~W~~~r~g~~L~~~L~~e~~~~~g~~v 103 (105)
T cd00503 37 GVLTLTFGNGSTIVINRQEPLRQIWLASKVGGYHFDYKNGKWICTRSGEELWELLEEECSAQSGEDV 103 (105)
T ss_pred CEEEEEECCCCEEEEeCCchhhhhheecCCCCccceecCCEEEECCCCChHHHHHHHHHHHHhCCcc
Confidence 344444555566666666322 122223334433 2478999999999999998765
No 134
>KOG3904|consensus
Probab=26.53 E-value=33 Score=22.88 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHhccC
Q psy9980 58 EDIGEAAVREVFEETNIR 75 (124)
Q Consensus 58 Es~~~aa~RE~~EE~Gl~ 75 (124)
-.....|+||..||.|+-
T Consensus 23 i~lrltAire~feE~gil 40 (209)
T KOG3904|consen 23 IALRLTAIRETFEEVGIL 40 (209)
T ss_pred eeeccHHHHHHHhhhhee
Confidence 456778999999999974
No 135
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=26.09 E-value=1.2e+02 Score=23.26 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=37.6
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeecc-ceeecCC--C--CHHHHHHHHHHHHhccCcccceeEE
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLP-GGYVEMS--E--DIGEAAVREVFEETNIRTEFHSVVA 83 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~P-gG~~~~g--E--s~~~aa~RE~~EE~Gl~~~~~~~~~ 83 (124)
.++.++++|.+++++-..++.. . + -+| .|+||.+ | .....+++++.++.|++.....-++
T Consensus 15 TssRaivfd~~g~iva~~q~e~-~-Q-~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIG 79 (499)
T COG0554 15 TSSRAIVFDEDGNIVAIAQREF-T-Q-IYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIG 79 (499)
T ss_pred cceeEEEECCCCCchhhhhhhh-h-h-hCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 4567888997777766555321 1 2 266 6888876 2 2344667788888888766444444
No 136
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=25.64 E-value=21 Score=26.34 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=20.8
Q ss_pred ecCCCCHHHHHHHHHHHHhccCccc
Q psy9980 54 VEMSEDIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 54 ~~~gEs~~~aa~RE~~EE~Gl~~~~ 78 (124)
+...||.+..+.||++.|.|=+++.
T Consensus 296 istEEsiRk~vARELHDeIGQnITA 320 (497)
T COG3851 296 ISTEESIRKDVARELHDEIGQNITA 320 (497)
T ss_pred HhhHHHHHHHHHHHHHHHhcchHHH
Confidence 4556899999999999999987763
No 137
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=24.68 E-value=82 Score=16.80 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=11.1
Q ss_pred cceeecCCCCHHHHHHH
Q psy9980 50 PGGYVEMSEDIGEAAVR 66 (124)
Q Consensus 50 PgG~~~~gEs~~~aa~R 66 (124)
|.-.|..|||++.|..|
T Consensus 2 ~~V~V~~~e~ie~Alrr 18 (64)
T PRK00270 2 PQVKVRENESIDKALRR 18 (64)
T ss_pred CeeEeCCCChHHHHHHH
Confidence 44567778877776544
No 138
>PF03068 PAD: Protein-arginine deiminase (PAD); InterPro: IPR013530 In the presence of calcium ions, Protein-arginine deiminase (PAD) enzymes 3.5.3.15 from EC catalyse the post-translational modification reaction responsible for the formation of citrulline residues from protein-bound arginine residues []. Four PAD isotypes of PAD have been identified in mammals, a fifth may also exist. Non-mammalian vertebrates appear to have only a single PAD enzyme. All known natural substrates of PAD are proteins known to have an important structural function, such as keratin (PAD1), intermediate filaments or proteins associated with intermediate filaments. Citrulination may have consequences for the structural integrity and interactions of these proteins. Physiological levels of calcium appear to be too low to activate these enzymes suggesting a role between PAD activation and loss of calcium homeostasis during terminal differentiation and cell death (apoptosis). ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=24.08 E-value=46 Score=24.59 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=20.7
Q ss_pred cceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 50 PGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 50 PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
|-|-+-.|....+.+.|++.|-+|+++.
T Consensus 323 P~GP~i~G~d~~e~~v~~~~~~~G~~v~ 350 (385)
T PF03068_consen 323 PFGPVIDGRDCLEEAVRELLEPAGLNVT 350 (385)
T ss_dssp ----EETTEEHHHHHHHHHHGGGT-EEE
T ss_pred CcCCccCCEehHHHHHHHHHhhcCCEEE
Confidence 4566677899999999999999999875
No 139
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=23.84 E-value=40 Score=22.12 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=24.0
Q ss_pred EEEEEcCCCcEEEEEecCC--CCCCeeccceee---cCCCCHHHHHH
Q psy9980 24 GAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYV---EMSEDIGEAAV 65 (124)
Q Consensus 24 ~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~---~~gEs~~~aa~ 65 (124)
++++.+ +|+..+..|... ..-.-.||+|.- ..|++..||+.
T Consensus 34 ~lvv~~-~g~t~~~~r~g~~~~~f~s~lP~g~~~~~~~g~tILDci~ 79 (186)
T cd09232 34 CLVVAS-KGKTVARSKNGRTLHRFSSALPGGSRKTSNSGYTILDCIY 79 (186)
T ss_pred EEEEEe-CCEEEEEeCCCCEEEecccCCCCCCcCCCCCCCEEEEEec
Confidence 334444 577777766432 233446899874 45677777664
No 140
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.42 E-value=78 Score=12.93 Aligned_cols=17 Identities=0% Similarity=0.026 Sum_probs=11.9
Q ss_pred eEEEEEEcCCCcEEEEE
Q psy9980 22 GAGAVVLNDKNQVLVVK 38 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~ 38 (124)
.+..+..|.+|.+.+..
T Consensus 6 ~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp CEEEEEE-TTSCEEEEE
T ss_pred eEEEEEEcCCcCEEEEe
Confidence 56778888888887753
No 141
>PRK01381 Trp operon repressor; Provisional
Probab=22.41 E-value=63 Score=18.98 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.6
Q ss_pred HHHHHHHHhccCcc
Q psy9980 64 AVREVFEETNIRTE 77 (124)
Q Consensus 64 a~RE~~EE~Gl~~~ 77 (124)
-.||+.+++|+.+.
T Consensus 57 sQREIa~~lGvSia 70 (99)
T PRK01381 57 SQREIKQELGVGIA 70 (99)
T ss_pred CHHHHHHHhCCcee
Confidence 37999999998764
No 142
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=22.29 E-value=41 Score=21.17 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCcc-cceeEEEeecccCCcCcccEEEEE
Q psy9980 63 AAVREVFEETNIRTE-FHSVVAFRHTHKAAFGCSDIYFIV 101 (124)
Q Consensus 63 aa~RE~~EE~Gl~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 101 (124)
.+++++.|.+|+... ...+.+++..+.......++..++
T Consensus 41 ~~~~~iA~~l~v~~~~v~~v~tFY~~f~~~p~gk~~I~VC 80 (154)
T PRK07539 41 EAIEAVADYLGMPAIDVEEVATFYSMIFRQPVGRHVIQVC 80 (154)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHhhhCcCCCCCEEEEEc
Confidence 466778888888765 334444433333333333344344
No 143
>PRK13844 recombination protein RecR; Provisional
Probab=22.25 E-value=28 Score=23.21 Aligned_cols=52 Identities=8% Similarity=-0.015 Sum_probs=33.3
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecC--CCCHHHHHHHHHHHHhc
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEM--SEDIGEAAVREVFEETN 73 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~--gEs~~~aa~RE~~EE~G 73 (124)
....+||-+.. .++...+....+|+|-.-+|.+.| |..+++--+.+|.+-+.
T Consensus 82 ~~~iCVVE~~~-Dv~aiE~t~~y~G~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~ 135 (200)
T PRK13844 82 DTKLCIIESML-DMIAIEEAGIYRGKYFVLNGRISPLDGIGPSELKLDILQQIIA 135 (200)
T ss_pred CCEEEEECCHH-HHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHh
Confidence 33444444442 333333433378999999999987 66788777777777654
No 144
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=22.20 E-value=48 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=12.9
Q ss_pred HHHHHHHHHhccCcc-cceeEEEe
Q psy9980 63 AAVREVFEETNIRTE-FHSVVAFR 85 (124)
Q Consensus 63 aa~RE~~EE~Gl~~~-~~~~~~~~ 85 (124)
.+++++.|.+|+... ...+.+++
T Consensus 35 ~~~~~iA~~l~~~~~~v~~v~tFY 58 (148)
T TIGR01958 35 EAIAAVAEMLGIPPVWVYEVATFY 58 (148)
T ss_pred HHHHHHHHHhCcCHHHHHHHHhHH
Confidence 356667777777654 33344433
No 145
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.90 E-value=89 Score=16.79 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=18.0
Q ss_pred eeccceeecCCC--CHHHHHHHHHHHHh
Q psy9980 47 WKLPGGYVEMSE--DIGEAAVREVFEET 72 (124)
Q Consensus 47 w~~PgG~~~~gE--s~~~aa~RE~~EE~ 72 (124)
+--||..++.|+ +..++|.|+=-+.-
T Consensus 6 YlGPgn~l~~g~Pv~~~D~aA~~HD~aY 33 (64)
T PF08398_consen 6 YLGPGNPLDNGEPVNPVDAAAREHDEAY 33 (64)
T ss_pred ccCCCCCcCCCCCCCHHHHHHHHHHHHH
Confidence 445788888887 47888888654433
No 146
>PF13680 DUF4152: Protein of unknown function (DUF4152)
Probab=21.84 E-value=66 Score=21.04 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhccCcc
Q psy9980 62 EAAVREVFEETNIRTE 77 (124)
Q Consensus 62 ~aa~RE~~EE~Gl~~~ 77 (124)
+-..+.++||||+.+-
T Consensus 117 QPLAkkfWEetgiEIl 132 (227)
T PF13680_consen 117 QPLAKKFWEETGIEIL 132 (227)
T ss_pred HHHHHHHHHhhCcEEE
Confidence 3445569999999764
No 147
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=21.40 E-value=75 Score=17.63 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=9.9
Q ss_pred HHHHHHHhccCc
Q psy9980 65 VREVFEETNIRT 76 (124)
Q Consensus 65 ~RE~~EE~Gl~~ 76 (124)
.+++.+|+|+.+
T Consensus 63 L~~ia~~lGi~i 74 (75)
T PF11869_consen 63 LQAIAEELGIDI 74 (75)
T ss_pred HHHHHHHhCccc
Confidence 677889999875
No 148
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.17 E-value=34 Score=22.72 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=39.1
Q ss_pred CCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecC--CCCHHHHHHHHHHHHhc
Q psy9980 8 DSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEM--SEDIGEAAVREVFEETN 73 (124)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~--gEs~~~aa~RE~~EE~G 73 (124)
...|..=..+.......+||-+.. .++...+....+|+|-.-+|.+.| |..+++--+.+|.+-+.
T Consensus 65 ~~~C~IC~d~~Rd~~~iCVVE~~~-Dv~aiE~~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~ 131 (195)
T TIGR00615 65 QEVCNICSDERRDNSVICVVEDPK-DVFALEKTKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQ 131 (195)
T ss_pred CCcCCCCCCCCCCCCEEEEECCHH-HHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHh
Confidence 334444333333334455555542 344444433378999999999988 56777777777776654
No 149
>PF13152 DUF3967: Protein of unknown function (DUF3967)
Probab=20.91 E-value=67 Score=14.88 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHh
Q psy9980 61 GEAAVREVFEET 72 (124)
Q Consensus 61 ~~aa~RE~~EE~ 72 (124)
.-.++||+.|.=
T Consensus 9 Lm~~iREiQE~K 20 (34)
T PF13152_consen 9 LMQTIREIQETK 20 (34)
T ss_pred HHHHHHHHHHHH
Confidence 345788888753
No 150
>KOG0648|consensus
Probab=20.85 E-value=55 Score=23.23 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=35.2
Q ss_pred cCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 29 NDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 29 ~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
.+.+..++...... .+ .|.. .|+...++.+.+++.|++.++++....
T Consensus 39 ~~~d~~~f~~~l~~Sl~-~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~ 86 (295)
T KOG0648|consen 39 EPMDEKLFIEELRASLQ-KWYL-QGRKGIWLKLPEELARLVEEAAKYGFD 86 (295)
T ss_pred CCCCHHHHHHHHHHHHH-HHHH-ccCcccceechHHHHhHHHHHHhcCcE
Confidence 34344444444222 34 8887 999999999999999999999998765
No 151
>TIGR00030 S21p ribosomal protein S21. This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.
Probab=20.59 E-value=1.1e+02 Score=15.88 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=9.3
Q ss_pred eecCCCCHHHHHHH
Q psy9980 53 YVEMSEDIGEAAVR 66 (124)
Q Consensus 53 ~~~~gEs~~~aa~R 66 (124)
.|..|||.+.|..|
T Consensus 4 ~V~~~e~ie~alrr 17 (58)
T TIGR00030 4 KVKEGESIDSALRR 17 (58)
T ss_pred EeCCCCcHHHHHHH
Confidence 46678877776544
No 152
>KOG0643|consensus
Probab=20.06 E-value=1.1e+02 Score=21.64 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=37.2
Q ss_pred cccCCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecC
Q psy9980 2 TKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEM 56 (124)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~ 56 (124)
+.|+..+ -.++..|..+.-++-++-.|.+.+.|+.-.++...-+|+.+-|..-.
T Consensus 35 ~vw~s~n-GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 35 TVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred eEEEecC-CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 4566633 14566677777777777788766777776655456799999887654
Done!