Query psy9980
Match_columns 124
No_of_seqs 119 out of 1249
Neff 10.0
Searched_HMMs 29240
Date Sat Aug 17 00:36:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dyw_A MUTT/nudix family prote 99.9 2E-24 7E-29 135.7 11.6 118 6-124 15-134 (157)
2 3i7u_A AP4A hydrolase; nudix p 99.9 2.7E-24 9.4E-29 132.1 9.8 101 19-124 3-105 (134)
3 3exq_A Nudix family hydrolase; 99.9 3.7E-23 1.3E-27 130.4 12.1 108 15-124 5-114 (161)
4 1rya_A GDP-mannose mannosyl hy 99.9 1.4E-22 4.7E-27 127.2 13.6 108 17-124 15-131 (160)
5 3h95_A Nucleoside diphosphate- 99.9 5.4E-23 1.8E-27 133.8 11.8 110 15-124 21-133 (199)
6 3grn_A MUTT related protein; s 99.9 2.2E-22 7.6E-27 125.6 13.9 105 17-124 5-112 (153)
7 3shd_A Phosphatase NUDJ; nudix 99.9 1.2E-22 4.2E-27 126.7 12.6 105 18-124 3-108 (153)
8 1sjy_A MUTT/nudix family prote 99.9 2.6E-22 8.8E-27 125.8 14.0 108 16-124 9-123 (159)
9 3eds_A MUTT/nudix family prote 99.9 3.5E-23 1.2E-27 129.4 9.7 106 16-124 17-128 (153)
10 3r03_A Nudix hydrolase; struct 99.9 1.9E-22 6.4E-27 124.6 12.5 106 17-124 5-112 (144)
11 3hhj_A Mutator MUTT protein; n 99.9 1.6E-22 5.4E-27 126.9 11.8 111 12-124 21-133 (158)
12 2fb1_A Conserved hypothetical 99.9 8.3E-23 2.8E-27 135.3 10.7 112 13-124 6-121 (226)
13 2yyh_A MUTT domain, 8-OXO-DGTP 99.9 3E-22 1E-26 123.2 12.5 106 16-124 5-114 (139)
14 3gg6_A Nudix motif 18, nucleos 99.9 1.5E-22 5.1E-27 126.7 10.4 104 16-124 16-123 (156)
15 3u53_A BIS(5'-nucleosyl)-tetra 99.9 6.1E-22 2.1E-26 124.0 12.0 101 22-124 5-118 (155)
16 3f6a_A Hydrolase, nudix family 99.9 5.5E-22 1.9E-26 124.6 11.8 103 19-124 5-126 (159)
17 2b0v_A Nudix hydrolase; struct 99.9 3.3E-22 1.1E-26 124.6 10.1 106 18-124 6-113 (153)
18 3oga_A Nucleoside triphosphata 99.9 7.8E-22 2.7E-26 124.6 11.9 106 18-124 25-142 (165)
19 1q27_A Putative nudix hydrolas 99.9 7.1E-22 2.4E-26 125.4 11.7 104 20-124 34-141 (171)
20 1vcd_A NDX1; nudix protein, di 99.9 8.1E-22 2.8E-26 119.2 11.4 99 20-124 2-100 (126)
21 2yvp_A NDX2, MUTT/nudix family 99.9 8.5E-23 2.9E-27 131.0 6.7 105 18-124 39-147 (182)
22 3q93_A 7,8-dihydro-8-oxoguanin 99.9 1.2E-21 4E-26 125.2 11.8 105 17-124 22-127 (176)
23 2w4e_A MUTT/nudix family prote 99.9 1.6E-22 5.5E-27 125.5 7.5 103 20-124 5-110 (145)
24 3gwy_A Putative CTP pyrophosph 99.9 2.1E-21 7.2E-26 119.6 12.4 101 19-124 5-109 (140)
25 3cng_A Nudix hydrolase; struct 99.9 2E-21 6.9E-26 125.4 12.6 104 15-124 35-139 (189)
26 3son_A Hypothetical nudix hydr 99.9 2.7E-21 9.4E-26 120.1 12.6 101 21-124 6-117 (149)
27 2pbt_A AP4A hydrolase; nudix p 99.9 1.1E-21 3.7E-26 119.7 9.8 101 19-124 3-105 (134)
28 1vk6_A NADH pyrophosphatase; 1 99.9 6.3E-22 2.2E-26 133.9 9.6 112 8-124 128-239 (269)
29 1ktg_A Diadenosine tetraphosph 99.9 1.8E-21 6.2E-26 119.3 10.8 104 20-124 3-111 (138)
30 3q1p_A Phosphohydrolase (MUTT/ 99.9 1.6E-21 5.6E-26 127.4 11.1 106 15-124 63-171 (205)
31 3id9_A MUTT/nudix family prote 99.9 2.3E-21 7.9E-26 123.0 11.5 104 17-124 20-128 (171)
32 2fkb_A Putative nudix hydrolas 99.9 4.7E-21 1.6E-25 122.5 12.5 103 19-124 36-142 (180)
33 3ees_A Probable pyrophosphohyd 99.9 2.7E-21 9.3E-26 120.3 11.0 101 20-124 21-123 (153)
34 3gz5_A MUTT/nudix family prote 99.9 5.9E-22 2E-26 132.3 8.2 109 16-124 18-132 (240)
35 3o8s_A Nudix hydrolase, ADP-ri 99.9 4.1E-21 1.4E-25 125.5 10.7 105 15-124 65-172 (206)
36 1nqz_A COA pyrophosphatase (MU 99.9 6E-21 2.1E-25 123.5 11.2 104 19-124 33-143 (194)
37 1v8y_A ADP-ribose pyrophosphat 99.9 6.6E-21 2.3E-25 121.0 11.1 103 18-124 32-137 (170)
38 2b06_A MUTT/nudix family prote 99.9 4.2E-21 1.4E-25 119.9 9.8 104 16-124 4-112 (155)
39 3i9x_A MUTT/nudix family prote 99.9 2.3E-21 7.8E-26 124.9 8.8 104 21-124 28-148 (187)
40 1hzt_A Isopentenyl diphosphate 99.9 3.9E-21 1.3E-25 124.1 9.4 104 20-124 32-143 (190)
41 3f13_A Putative nudix hydrolas 99.8 1.4E-20 4.7E-25 119.0 11.2 93 21-124 16-108 (163)
42 3fcm_A Hydrolase, nudix family 99.8 8.5E-21 2.9E-25 123.1 10.4 107 16-124 41-160 (197)
43 2o1c_A DATP pyrophosphohydrola 99.8 2.1E-20 7.1E-25 115.8 11.2 104 19-124 8-125 (150)
44 2kdv_A RNA pyrophosphohydrolas 99.8 4.4E-20 1.5E-24 116.7 12.8 66 18-85 6-71 (164)
45 1f3y_A Diadenosine 5',5'''-P1, 99.8 1.2E-20 4.1E-25 118.7 10.1 59 18-77 12-70 (165)
46 2azw_A MUTT/nudix family prote 99.8 1.6E-20 5.5E-25 116.2 10.1 105 16-124 14-123 (148)
47 2rrk_A ORF135, CTP pyrophospho 99.8 2E-20 6.9E-25 114.8 10.2 98 22-124 11-110 (140)
48 1mk1_A ADPR pyrophosphatase; n 99.8 5.7E-21 2E-25 124.9 7.9 105 18-124 41-151 (207)
49 3fk9_A Mutator MUTT protein; s 99.8 2.4E-20 8.3E-25 120.3 10.2 100 21-124 5-107 (188)
50 2pqv_A MUTT/nudix family prote 99.8 1.9E-20 6.6E-25 116.9 8.8 102 18-124 17-122 (154)
51 2jvb_A Protein PSU1, mRNA-deca 99.8 6.4E-21 2.2E-25 118.0 6.2 56 21-78 5-61 (146)
52 2fml_A MUTT/nudix family prote 99.8 2.2E-19 7.4E-24 121.9 13.9 112 12-124 31-150 (273)
53 1mut_A MUTT, nucleoside tripho 99.8 5.9E-21 2E-25 115.7 5.1 97 24-124 8-106 (129)
54 2fvv_A Diphosphoinositol polyp 99.8 5.6E-20 1.9E-24 119.2 9.3 66 20-86 40-107 (194)
55 1vhz_A ADP compounds hydrolase 99.8 6.9E-20 2.4E-24 119.1 9.7 101 21-124 50-153 (198)
56 2qjo_A Bifunctional NMN adenyl 99.8 1.8E-19 6.1E-24 125.2 12.2 108 16-124 199-315 (341)
57 1g0s_A Hypothetical 23.7 kDa p 99.8 1.1E-19 3.8E-24 119.0 9.8 103 20-124 57-172 (209)
58 2qjt_B Nicotinamide-nucleotide 99.8 2E-19 6.7E-24 125.6 11.5 111 13-124 201-321 (352)
59 3e57_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 122.1 5.6 100 22-124 70-181 (211)
60 2dsc_A ADP-sugar pyrophosphata 99.8 3.2E-19 1.1E-23 117.0 9.9 93 32-124 77-176 (212)
61 3q91_A Uridine diphosphate glu 99.8 1.7E-19 5.6E-24 118.8 8.4 118 4-124 21-181 (218)
62 1k2e_A Nudix homolog; nudix/MU 99.8 8E-20 2.7E-24 114.5 6.5 58 21-81 2-59 (156)
63 3o6z_A GDP-mannose pyrophospha 99.8 4.9E-19 1.7E-23 114.4 9.9 101 20-124 45-159 (191)
64 2a6t_A SPAC19A8.12; alpha/beta 99.8 2.4E-19 8.1E-24 121.6 7.3 58 20-78 101-159 (271)
65 1x51_A A/G-specific adenine DN 99.8 6.8E-19 2.3E-23 110.0 8.9 102 18-124 17-126 (155)
66 2pny_A Isopentenyl-diphosphate 99.8 7.2E-18 2.5E-22 112.8 12.5 106 18-124 68-194 (246)
67 2dho_A Isopentenyl-diphosphate 99.8 9.9E-18 3.4E-22 111.5 12.9 106 18-124 57-183 (235)
68 1u20_A U8 snoRNA-binding prote 99.8 4.8E-19 1.7E-23 116.2 4.9 49 28-79 52-101 (212)
69 3fsp_A A/G-specific adenine gl 99.7 1.5E-17 5.1E-22 117.1 9.3 99 18-124 238-338 (369)
70 3fjy_A Probable MUTT1 protein; 99.7 1.5E-17 5.2E-22 116.8 8.9 54 30-85 36-89 (364)
71 3dup_A MUTT/nudix family prote 99.7 6.1E-16 2.1E-20 105.8 10.5 108 17-124 115-235 (300)
72 2xsq_A U8 snoRNA-decapping enz 99.6 8.9E-16 3E-20 101.0 6.8 43 33-78 66-109 (217)
73 1q33_A Pyrophosphatase, ADP-ri 99.6 3E-15 1E-19 102.4 9.5 42 33-76 140-181 (292)
74 3qsj_A Nudix hydrolase; struct 99.6 6.8E-15 2.3E-19 97.5 10.1 61 17-77 5-92 (232)
75 3kvh_A Protein syndesmos; NUDT 99.4 1.8E-13 6.2E-18 87.3 4.9 64 17-83 18-94 (214)
76 3rh7_A Hypothetical oxidoreduc 99.4 4.2E-12 1.4E-16 87.7 9.6 61 19-87 182-243 (321)
77 3bho_A Cleavage and polyadenyl 99.4 3.6E-12 1.2E-16 82.1 7.9 52 20-74 58-112 (208)
78 3bqa_A Sensor protein PHOQ; hi 58.0 1.4 4.8E-05 26.6 -0.8 39 3-41 22-60 (148)
79 4efo_A Serine/threonine-protei 44.2 36 0.0012 18.9 3.7 30 53-83 29-58 (94)
80 1ew4_A CYAY protein; friedreic 40.3 50 0.0017 18.7 5.4 54 23-77 38-104 (106)
81 1vig_A Vigilin; RNA-binding pr 36.7 14 0.00048 19.1 1.2 15 64-78 26-40 (71)
82 2opv_A KHSRP protein; KH domai 31.1 23 0.0008 18.8 1.5 17 63-79 34-50 (85)
83 2ctk_A Vigilin; K homology typ 29.2 21 0.00073 20.0 1.2 15 64-78 38-52 (104)
84 1x4m_A FAR upstream element bi 28.7 23 0.00078 19.4 1.2 15 64-78 36-50 (94)
85 2dgr_A Ring finger and KH doma 28.7 21 0.00071 19.2 1.0 14 65-78 32-45 (83)
86 2axy_A Poly(RC)-binding protei 28.6 23 0.00079 18.3 1.2 15 64-78 26-40 (73)
87 2khr_A Protein MBTH; sideropho 27.2 76 0.0026 16.8 3.3 26 43-68 29-55 (74)
88 3lb6_A Interleukin-13, IL-13; 26.8 14 0.00047 21.8 0.0 23 51-73 15-37 (132)
89 2cte_A Vigilin; K homology typ 26.1 33 0.0011 18.7 1.6 15 64-78 38-52 (94)
90 1zzk_A Heterogeneous nuclear r 25.4 29 0.00099 18.3 1.2 15 64-78 28-42 (82)
91 1v5t_A 8430435I17RIK protein; 25.2 83 0.0028 16.7 3.1 28 54-82 24-51 (90)
92 1j5k_A Heterogeneous nuclear r 24.9 27 0.00094 18.8 1.1 16 64-79 35-50 (89)
93 1wvn_A Poly(RC)-binding protei 23.8 32 0.0011 18.1 1.2 16 64-79 27-42 (82)
94 2hh3_A KH-type splicing regula 23.6 37 0.0013 19.1 1.5 17 63-79 31-47 (106)
95 2p2r_A Poly(RC)-binding protei 23.5 34 0.0011 17.7 1.2 16 64-79 26-41 (76)
96 1we8_A Tudor and KH domain con 23.3 33 0.0011 19.1 1.2 15 64-78 36-50 (104)
97 2hh2_A KH-type splicing regula 23.1 30 0.001 19.4 1.0 15 64-78 28-42 (107)
98 2ctm_A Vigilin; K homology typ 22.9 33 0.0011 18.9 1.1 15 64-78 38-52 (95)
99 1zl8_A LIN-7; heterodimer, alp 22.4 42 0.0014 16.4 1.3 11 61-71 41-51 (53)
100 2ctj_A Vigilin; K homology typ 22.3 37 0.0013 18.7 1.3 14 64-77 38-52 (95)
101 3t3l_A Frataxin, mitochondrial 22.3 1.3E+02 0.0044 17.7 5.9 24 55-78 96-119 (129)
102 2yzt_A Putative uncharacterize 22.1 44 0.0015 16.9 1.5 25 48-75 23-47 (67)
103 1dtj_A RNA-binding neurooncolo 22.1 37 0.0013 17.4 1.2 15 64-78 24-38 (76)
104 2yqr_A KIAA0907 protein; struc 21.6 35 0.0012 19.8 1.1 16 63-78 39-54 (119)
105 3hms_A Hepatocyte growth facto 21.5 91 0.0031 17.5 2.8 24 56-80 38-61 (101)
106 2dzm_A FAS-associated factor 1 21.3 1.2E+02 0.004 16.8 3.4 29 53-82 24-52 (100)
107 2l2l_A Transcriptional repress 21.2 71 0.0024 14.8 1.9 14 61-74 6-19 (43)
108 2ctl_A Vigilin; K homology typ 20.7 41 0.0014 18.5 1.2 15 64-78 38-52 (97)
109 2pst_X Hypothetical protein PA 20.6 56 0.0019 17.3 1.7 24 43-66 27-51 (74)
110 1v86_A DNA segment, CHR 7, way 20.2 1.1E+02 0.0036 16.5 2.9 29 53-82 32-60 (95)
No 1
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}
Probab=99.92 E-value=2e-24 Score=135.67 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEE
Q psy9980 6 PDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84 (124)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~ 84 (124)
++..+..+....++++++.+++++ ++++||++|... ..+.|.||||++++||++.+||+||+.||||+++....++..
T Consensus 15 ~~~~p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 93 (157)
T 4dyw_A 15 QTQGPGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV 93 (157)
T ss_dssp -----------CCCEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEE
T ss_pred cCCCCCCCCCCCCceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence 445556666667788889999998 489999999644 689999999999999999999999999999999987777776
Q ss_pred eecccCCcCcccEEEEEEeccCCccCCC-CcccccceeecC
Q psy9980 85 RHTHKAAFGCSDIYFIVRLKPLTQEITK-DDREITESKWMD 124 (124)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~ 124 (124)
............+.++|.+....+.+.. .++|+.+++|++
T Consensus 94 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~ 134 (157)
T 4dyw_A 94 VDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFA 134 (157)
T ss_dssp EEEEETTTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEE
T ss_pred EEeeccCCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEEC
Confidence 5544332333334455555444333332 457889999985
No 2
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=99.91 E-value=2.7e-24 Score=132.05 Aligned_cols=101 Identities=28% Similarity=0.372 Sum_probs=72.5
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc--cc
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC--SD 96 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~--~~ 96 (124)
..++++++|+++ |++||++|+ .|.|.||||++++|||+.+||+||++||||+++....++....+.....+. ..
T Consensus 3 ~~~aag~vv~~~-~~vLL~~r~---~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 78 (134)
T 3i7u_A 3 KEFSAGGVLFKD-GEVLLIKTP---SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFK 78 (134)
T ss_dssp EEEEEEEEEEET-TEEEEEECT---TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred cEEEEEEEEEEC-CEEEEEEeC---CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEE
Confidence 456788888876 799999983 589999999999999999999999999999998876666654322222221 12
Q ss_pred EEEEEEeccCCccCCCCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..++|.+....+.+.+ ++|+.+++|++
T Consensus 79 ~~~~f~~~~~~~~~~~-~~E~~~~~W~~ 105 (134)
T 3i7u_A 79 TVKYYLMKYKEGEPRP-SWEVKDAKFFP 105 (134)
T ss_dssp EEEEEEEEEEEECCCC-CTTSSEEEEEE
T ss_pred EEEEEEEEEcCCcCcC-ChhheEEEEEE
Confidence 2233444444444443 47889999985
No 3
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}
Probab=99.90 E-value=3.7e-23 Score=130.36 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=81.2
Q ss_pred CCcceeeeEEEEEEcCC-CcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc
Q psy9980 15 NYAHTMIGAGAVVLNDK-NQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF 92 (124)
Q Consensus 15 ~~~~~~~~~~~~v~~~~-~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~ 92 (124)
...++..++.+++.+++ +++||++|... +.|.|.||||++++|||+++||+||+.||||+++....++..........
T Consensus 5 r~~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 84 (161)
T 3exq_A 5 RTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDR 84 (161)
T ss_dssp SCCCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSC
T ss_pred ccCCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCC
Confidence 34566778888888865 69999999654 78889999999999999999999999999999998777777665443233
Q ss_pred CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 93 GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....+.++|.+....+. +...|..+++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~ 114 (161)
T 3exq_A 85 QHRKLGLLYRASNFTGT--LKASAEGQLSWLP 114 (161)
T ss_dssp SSEEEEEEEEECCEESC--CCGGGTTTEEEEC
T ss_pred CeEEEEEEEEEeccCCc--cCCCccceEEEee
Confidence 33345555555544433 3356778899986
No 4
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Probab=99.90 E-value=1.4e-22 Score=127.17 Aligned_cols=108 Identities=18% Similarity=0.295 Sum_probs=78.3
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc--cceeEEEeecc-cCC-
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE--FHSVVAFRHTH-KAA- 91 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~~-~~~- 91 (124)
.++.+++.+++++.++++||++|... ++|.|+||||++++||++.+||+||+.||||+++. ...++....+. ...
T Consensus 15 ~~~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 94 (160)
T 1rya_A 15 STPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNF 94 (160)
T ss_dssp HSCEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBT
T ss_pred CCcEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccc
Confidence 34567888899987789999999654 68999999999999999999999999999999964 44555544322 111
Q ss_pred c----CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 92 F----GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 92 ~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
. ....+.++|.+....+.+..+++|+.+++|++
T Consensus 95 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~ 131 (160)
T 1rya_A 95 SGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLT 131 (160)
T ss_dssp TBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEEC
T ss_pred cCCCcCcEEEEEEEEEEcCccccccCCCccceEEEec
Confidence 0 11334455555544445555667889999986
No 5
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=99.90 E-value=5.4e-23 Score=133.75 Aligned_cols=110 Identities=42% Similarity=0.750 Sum_probs=78.0
Q ss_pred CCcceeeeEEEEEEc-CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--
Q psy9980 15 NYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA-- 91 (124)
Q Consensus 15 ~~~~~~~~~~~~v~~-~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~-- 91 (124)
...++.+++++++++ .++++||++|+.+..|.|.||||++++||++++||+||+.||||+++....++.+...+...
T Consensus 21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 100 (199)
T 3h95_A 21 QSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGA 100 (199)
T ss_dssp -----CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC-----
T ss_pred ccCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCC
Confidence 355677788777777 45799999997656899999999999999999999999999999999877777754333222
Q ss_pred cCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 92 FGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.....+++++...........+++|+.+++|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~ 133 (199)
T 3h95_A 101 FGKSDMYIICRLKPYSFTINFCQEECLRCEWMD 133 (199)
T ss_dssp ----CEEEEEEEEESCCCCCCCTTTEEEEEEEE
T ss_pred ceeEEEEEEEEEcCCCcccCCCccceeeeEEEe
Confidence 222345555555544445555678999999985
No 6
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}
Probab=99.90 E-value=2.2e-22 Score=125.64 Aligned_cols=105 Identities=23% Similarity=0.334 Sum_probs=79.1
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG 93 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 93 (124)
.+...++++++++.++++||++|... ++|.|.||||++++||++.+||+||+.||||+.+....++........ .
T Consensus 5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~--~ 82 (153)
T 3grn_A 5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELT--E 82 (153)
T ss_dssp SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECS--S
T ss_pred CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecC--C
Confidence 34677888899987789999999642 689999999999999999999999999999999987777766542221 2
Q ss_pred cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 94 CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.....++|.+....+.+.. .+|..+++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~e~~~~~W~~ 112 (153)
T 3grn_A 83 KKVIAIVFDGGYVVADVKL-SYEHIEYSWVS 112 (153)
T ss_dssp CEEEEEEEEEEECCCCCCC-CTTEEEEEEEC
T ss_pred ceEEEEEEEEEecCCcEec-CCCcceEEEEE
Confidence 2234445555444444433 47888999985
No 7
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A
Probab=99.90 E-value=1.2e-22 Score=126.67 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=77.9
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
++++++++++.++ +++||++|....++.|.+|||++++|||+++||+||+.||||+++....++....... ......+
T Consensus 3 ~p~~~v~~ii~~~-~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-~~~~~~~ 80 (153)
T 3shd_A 3 KPHVTVACVVHAE-GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIA-PDKTPFL 80 (153)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-TTSCCEE
T ss_pred CCceEEEEEEEeC-CEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEec-CCCceEE
Confidence 4566777777664 7999999964467899999999999999999999999999999998877777653322 2233344
Q ss_pred EEEEEeccCCcc-CCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQE-ITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~e~~~~~W~~ 124 (124)
.++|.+...... ....++|+.+++|++
T Consensus 81 ~~~f~~~~~~~~~~~~~~~E~~~~~W~~ 108 (153)
T 3shd_A 81 RFLFAIELEQICPTQPHDSDIDCCRWVS 108 (153)
T ss_dssp EEEEEEECSSCCCCCCCSTTCCEEEEEC
T ss_pred EEEEEEEccccCcCCCCcccceeeEEec
Confidence 445555444332 345678899999986
No 8
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=99.90 E-value=2.6e-22 Score=125.80 Aligned_cols=108 Identities=27% Similarity=0.354 Sum_probs=79.6
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecC----C-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFY----R-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA 90 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~----~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~ 90 (124)
....+.++++++++.++++||++|.. . .+|.|+||||++++||++.+||+||+.||||+++....++....+. .
T Consensus 9 ~~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~-~ 87 (159)
T 1sjy_A 9 VPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGR-F 87 (159)
T ss_dssp CCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEE-C
T ss_pred CCeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecc-c
Confidence 34556778888888778999999963 2 6799999999999999999999999999999999877666655432 1
Q ss_pred CcCcccEEEEEEeccCCcc-CCC-CcccccceeecC
Q psy9980 91 AFGCSDIYFIVRLKPLTQE-ITK-DDREITESKWMD 124 (124)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~-~~~e~~~~~W~~ 124 (124)
..+.....++|.+....+. +.. .++|+.++.|++
T Consensus 88 ~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~ 123 (159)
T 1sjy_A 88 PDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVS 123 (159)
T ss_dssp TTSCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEEC
T ss_pred CCCceEEEEEEEEEccCCCccccCCCCceeEEEEec
Confidence 2223334445555444433 444 567889999986
No 9
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} PDB: 3smd_A
Probab=99.89 E-value=3.5e-23 Score=129.44 Aligned_cols=106 Identities=23% Similarity=0.283 Sum_probs=71.8
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc----cCC
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH----KAA 91 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~----~~~ 91 (124)
......++++++++.++++||++|. ++.|.||||++++||++.+||+||+.||||+++....++...... ...
T Consensus 17 ~~~~~~~v~~ii~~~~~~vLL~~r~---~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 93 (153)
T 3eds_A 17 ELIFXPSVAAVIKNEQGEILFQYPG---GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKEYRYTYS 93 (153)
T ss_dssp SCEEEEEEEEEEBCTTCCEEEECC------CBBCSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEECSGGGEEECT
T ss_pred CcEEeeeEEEEEEcCCCeEEEEEcC---CCcEECCccccCCCCCHHHHHHHHHHHHHCccceeeeEEEEecccceeeecC
Confidence 4456678888888877899998885 799999999999999999999999999999999877777664211 111
Q ss_pred cCc--ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 92 FGC--SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 92 ~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
... ..+.++|.+....+.+...++|+.+++|++
T Consensus 94 ~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~ 128 (153)
T 3eds_A 94 NGDEVEYIVVVFECEVTSGELRSIDGESLKLQYFS 128 (153)
T ss_dssp TSCEEEEEEEEEEEEEEEECCC-------CEEEEC
T ss_pred CCCeEEEEEEEEEEEecCCccccCCCcEEEEEEEC
Confidence 211 224455555554555555678889999986
No 10
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0
Probab=99.89 E-value=1.9e-22 Score=124.55 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=74.3
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
.+....+++++++.++++||++|... ++|.|.||||++++||++.+||+||+.||||+.+....+..+..........
T Consensus 5 ~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 84 (144)
T 3r03_A 5 LPILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTF 84 (144)
T ss_dssp -CEEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSS
T ss_pred CceeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCe
Confidence 44556677777887789999999644 7899999999999999999999999999999998866444332111111222
Q ss_pred ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....++|.+....+. ....|..+++|++
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~e~~~~~W~~ 112 (144)
T 3r03_A 85 HLLMPLYACRSWRGR--ATAREGQTLAWVR 112 (144)
T ss_dssp EEEEEEEEECCCBSC--CCCCSSCEEEEEC
T ss_pred EEEEEEEEEEecCCc--cCCCCcceEEEEe
Confidence 334445555444332 3356778899985
No 11
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}
Probab=99.89 E-value=1.6e-22 Score=126.92 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=74.2
Q ss_pred CCCCCcceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980 12 RIPNYAHTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK 89 (124)
Q Consensus 12 ~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~ 89 (124)
+++...+....+++++++.++++||++|... ++|.|.||||++++||++.+||+||+.||||+.+....+..+.....
T Consensus 21 ~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~ 100 (158)
T 3hhj_A 21 SMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASH 100 (158)
T ss_dssp ------CEEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEE
T ss_pred cCCCCCceEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEee
Confidence 4444455666777778887789999999643 78999999999999999999999999999999988665433321111
Q ss_pred CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.........++|.+....+ .....|..+++|++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~W~~ 133 (158)
T 3hhj_A 101 GYETFHLLMPLYFCSHYKG--VAQGREGQNLKWIF 133 (158)
T ss_dssp ECSSCEEEEEEEEESCCBS--CCCCTTSCEEEEEE
T ss_pred ccCCcEEEEEEEEEEECCC--ccCCccccceEEEc
Confidence 1122233444455544333 23356778899974
No 12
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6
Probab=99.89 E-value=8.3e-23 Score=135.32 Aligned_cols=112 Identities=16% Similarity=0.269 Sum_probs=79.8
Q ss_pred CCCCcceeeeEEEEEE---cCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc
Q psy9980 13 IPNYAHTMIGAGAVVL---NDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH 88 (124)
Q Consensus 13 ~~~~~~~~~~~~~~v~---~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~ 88 (124)
++.+.++.+++.++|+ ++++++||++|... ..|.|.+|||++++|||+++||+||+.||||+++.....+......
T Consensus 6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~ 85 (226)
T 2fb1_A 6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI 85 (226)
T ss_dssp TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence 4456777888888888 55679999999654 6799999999999999999999999999999998866656554332
Q ss_pred cCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 89 KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
........+.+.|.+..........++|+.++.|++
T Consensus 86 ~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~ 121 (226)
T 2fb1_A 86 DRDPGERVVSIAYYALININEYDRELVQKHNAYWVN 121 (226)
T ss_dssp TSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEE
T ss_pred CcCCCceEEEEEEEEEecCcccccCCccccceEEEE
Confidence 222222334434444433333223456788999985
No 13
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}
Probab=99.89 E-value=3e-22 Score=123.17 Aligned_cols=106 Identities=19% Similarity=0.291 Sum_probs=74.3
Q ss_pred CcceeeeEEEEEEc--CCCc--EEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980 16 YAHTMIGAGAVVLN--DKNQ--VLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA 91 (124)
Q Consensus 16 ~~~~~~~~~~~v~~--~~~~--iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~ 91 (124)
+..+.+++.+++++ ++++ +||++|+.. ++.|+||||++++|||+++||+||+.||||+++....++.........
T Consensus 5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~-~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~ 83 (139)
T 2yyh_A 5 VKTPLLATDVIIRLWDGENFKGIVLIERKYP-PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERD 83 (139)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEECSS-SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSC
T ss_pred ccCCeEEEEEEEEEEcCCCcEEEEEEEecCC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcC
Confidence 45566777777776 5677 999998643 344999999999999999999999999999998877777665432222
Q ss_pred cCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 92 FGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.....+.++|.+.. .+.+. .++|+.+++|++
T Consensus 84 ~~~~~~~~~f~~~~-~~~~~-~~~e~~~~~W~~ 114 (139)
T 2yyh_A 84 PRAHVVSVVWIGDA-QGEPK-AGSDAKKVKVYR 114 (139)
T ss_dssp TTSCEEEEEEEEEE-ESCCC-CCTTEEEEEEEC
T ss_pred CCceEEEEEEEEec-CCccC-CCCCcceEEEEE
Confidence 12223344444443 23333 467888999986
No 14
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=126.73 Aligned_cols=104 Identities=28% Similarity=0.391 Sum_probs=75.7
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
.......+++++++.++++||++|... +.|.|+||||++++|||+++||+||++||||+++....++...... .
T Consensus 16 ~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~-- 90 (156)
T 3gg6_A 16 RKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---P-- 90 (156)
T ss_dssp CTTCEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---T--
T ss_pred CCceEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---C--
Confidence 345556677788887789999999654 6899999999999999999999999999999999877777765321 1
Q ss_pred ccEEEEEEeccCCccCC---CCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEIT---KDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~---~~~~e~~~~~W~~ 124 (124)
..+.++|.+....+.+. .+.+|+.+++|++
T Consensus 91 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~ 123 (156)
T 3gg6_A 91 SWVRFVFLARPTGGILKTSKEADAESLQAAWYP 123 (156)
T ss_dssp TEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEE
T ss_pred CEEEEEEEEEeeCCeeccCCCCCcceeeeEEEc
Confidence 12333333332222222 2447888999985
No 15
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=99.88 E-value=6.1e-22 Score=124.05 Aligned_cols=101 Identities=25% Similarity=0.368 Sum_probs=67.7
Q ss_pred eEEEEEE---------cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecc-cC-
Q psy9980 22 GAGAVVL---------NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTH-KA- 90 (124)
Q Consensus 22 ~~~~~v~---------~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~-~~- 90 (124)
++.++++ +++.++||+||++ ..+.|.||||++++|||+.+||+||++||||+++....++...... ..
T Consensus 5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~-~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 83 (155)
T 3u53_A 5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD-GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYV 83 (155)
T ss_dssp EEEEEEEEECCCSSSSSCSEEEEEEEESS-SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEE
T ss_pred EeEEEEEccccccceeCCCcEEEEEEecC-CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecC
Confidence 5566666 3455899999965 4688999999999999999999999999999998866555433211 11
Q ss_pred CcCccc--EEEEEEeccCCccCCCCcccccceeecC
Q psy9980 91 AFGCSD--IYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 91 ~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...... .++++........+. .++|+.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~ 118 (155)
T 3u53_A 84 ARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLG 118 (155)
T ss_dssp ETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEEC
T ss_pred CCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeE
Confidence 111122 223333333222322 457899999986
No 16
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}
Probab=99.88 E-value=5.5e-22 Score=124.62 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=74.8
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee------------
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH------------ 86 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~------------ 86 (124)
...++++++++ ++++||++|+. .|.|.+|||++++|||+++||+||++||||+++....++.+..
T Consensus 5 ~~~~v~~vi~~-~~~vLL~~r~~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (159)
T 3f6a_A 5 RHFTVSVFIVC-KDKVLLHLHKK--AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLL 81 (159)
T ss_dssp SCEEEEEEEEE-TTEEEEEECSS--SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEE
T ss_pred ceEEEEEEEEE-CCEEEEEEcCC--CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccccc
Confidence 35677777777 47999999963 6899999999999999999999999999999987655553210
Q ss_pred -------cccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 87 -------THKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 87 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..........+.++|.+....+.+..+++|..+++|++
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~ 126 (159)
T 3f6a_A 82 INPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYS 126 (159)
T ss_dssp CCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEEC
T ss_pred cCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEee
Confidence 00111222344455666655555555678999999986
No 17
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=99.88 E-value=3.3e-22 Score=124.57 Aligned_cols=106 Identities=25% Similarity=0.304 Sum_probs=73.4
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCCC-CCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCccc
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSD 96 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~~-~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 96 (124)
+++.++.+++.++ +++||++|.... ++.|.||||++++||++.+||+||+.||||+++....++..............
T Consensus 6 ~~~~~v~~ii~~~-~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T 2b0v_A 6 KPNVTVAAVIEQD-DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTY 84 (153)
T ss_dssp CCEEEEEEECEET-TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEE
T ss_pred cCCEEEEEEEeeC-CEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEE
Confidence 4456666666654 799999996544 78999999999999999999999999999999887777665532211112223
Q ss_pred EEEEEEeccCCccC-CCCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEI-TKDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~-~~~~~e~~~~~W~~ 124 (124)
+.++|.+....... ....+|+.++.|++
T Consensus 85 ~~~~f~~~~~~~~~~~~~~~e~~~~~W~~ 113 (153)
T 2b0v_A 85 LRFTFSGQVVSFDPDRKLDTGIVRAAWFS 113 (153)
T ss_dssp EEEEEEEEEEEECTTSCCCTTEEEEEEEE
T ss_pred EEEEEEEEeCCCCCCCCCCCCeeeEEEec
Confidence 33444443333222 33467888999985
No 18
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A
Probab=99.88 E-value=7.8e-22 Score=124.56 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=69.4
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee-----ccc
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH-----THK 89 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~-----~~~ 89 (124)
.....+++++++.++++||++|+.. ++|.|++|||++++||++++||+||+.||||+++....+..+.. .+.
T Consensus 25 ~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 104 (165)
T 3oga_A 25 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKT 104 (165)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEE
T ss_pred cceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEe
Confidence 3344455555555589999999643 57999999999999999999999999999999988665554321 111
Q ss_pred CCcCc----ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 90 AAFGC----SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 90 ~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..... ..+++++.+....+.+.. ++|+.+++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~ 142 (165)
T 3oga_A 105 YADGRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVK 142 (165)
T ss_dssp C--CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEEC
T ss_pred cCCCCceeEEEEEEEEEeeccCCCccC-CchheeeEEcc
Confidence 11111 123344445444444333 47888999985
No 19
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=99.88 E-value=7.1e-22 Score=125.39 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=74.9
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS 95 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 95 (124)
..++++++++.++++||++|... ++|.|+ +|||++++|||+.+||+||++||||+++....+..+.....+.....
T Consensus 34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~ 113 (171)
T 1q27_A 34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS 113 (171)
T ss_dssp CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence 56777888887789999998543 589998 99999999999999999999999999988644333322221222222
Q ss_pred cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...++|.+.. .+.+..+++|+.+++|++
T Consensus 114 ~~~~~f~~~~-~~~~~~~~~E~~~~~W~~ 141 (171)
T 1q27_A 114 SFMCVYELRS-DATPIFNPNDISGGEWLT 141 (171)
T ss_dssp SEEEEEEEEC-CCCCCSCTTTCSCCEEEC
T ss_pred cEEEEEEEEE-CCccccCchhhheEEEec
Confidence 3555555544 444555667889999986
No 20
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=99.88 E-value=8.1e-22 Score=119.18 Aligned_cols=99 Identities=29% Similarity=0.388 Sum_probs=71.2
Q ss_pred eeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF 99 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (124)
.+++++++++.++++||+||+. |.|+||||++++|||+.+||+||+.||||+++....++....+... .......
T Consensus 2 ~~~~~~vi~~~~~~vLl~~r~~---g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~~~ 76 (126)
T 1vcd_A 2 ELGAGGVVFNAKREVLLLRDRM---GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNP--KGVEREV 76 (126)
T ss_dssp EEEEEEEEECTTSCEEEEECTT---SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECT--TSCEEEE
T ss_pred eeEEEEEEEcCCCEEEEEEECC---CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecC--CceEEEE
Confidence 3578889998778999999953 8999999999999999999999999999999887666665432221 1222223
Q ss_pred EEEeccCCccCCCCcccccceeecC
Q psy9980 100 IVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 100 ~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
+|.+....+. ....+|+.+++|++
T Consensus 77 ~~~~~~~~~~-~~~~~e~~~~~w~~ 100 (126)
T 1vcd_A 77 HWFLMRGEGA-PRLEEGMTGAGWFS 100 (126)
T ss_dssp EEEEEEEESC-CCCCTTCCEEEEEC
T ss_pred EEEEEEcCCC-CCCCcceeeeEEcC
Confidence 3333222222 23457788999986
No 21
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Probab=99.88 E-value=8.5e-23 Score=130.95 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=74.1
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS 95 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 95 (124)
....++.+++++.++++||++|... .+|.|+||||++++|||+++||+||+.||||+++....++...... .....
T Consensus 39 ~~~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~--~~~~~ 116 (182)
T 2yvp_A 39 GPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQ--PSFTA 116 (182)
T ss_dssp SSCEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSC--TTTBC
T ss_pred ecCCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCC--CCccc
Confidence 3345778888887789999998533 5789999999999999999999999999999998765555433221 11122
Q ss_pred cEEEEEEeccC--CccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPL--TQEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~ 124 (124)
...++|.+... ...+..+++|+.++.|++
T Consensus 117 ~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~ 147 (182)
T 2yvp_A 117 VVFHPFLALKARVVTPPTLEEGELLESLELP 147 (182)
T ss_dssp CEEEEEEECSCEECSCCCCCTTCCEEEEEEE
T ss_pred cEEEEEEEeccccCCCCCCCCCceEEEEEEE
Confidence 34444444322 233444677889999985
No 22
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A
Probab=99.87 E-value=1.2e-21 Score=125.23 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=71.8
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS 95 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 95 (124)
..++.++.+++ +.++++||++|+.. +.|.|.||||++++||++++||+||+.||||+++....++.............
T Consensus 22 ~~~~~~~~~vi-~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 100 (176)
T 3q93_A 22 GASRLYTLVLV-LQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL 100 (176)
T ss_dssp -CEEEEEEEEE-ECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred CCCcEEEEEEE-EeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence 34444444444 44589999998554 78999999999999999999999999999999998777776654332222223
Q ss_pred cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...++|.+....+.+ ...|..+++|++
T Consensus 101 ~~~~~f~~~~~~~~~--~~~e~~~~~W~~ 127 (176)
T 3q93_A 101 MDVHVFCTDSIQGTP--VESDEMRPCWFQ 127 (176)
T ss_dssp EEEEEEEESCEESCC--CCCSSEEEEEEE
T ss_pred EEEEEEEEECCCCCc--CCCcceeeEEee
Confidence 344555554433333 234566778874
No 23
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}
Probab=99.87 E-value=1.6e-22 Score=125.45 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=64.0
Q ss_pred eeeEEEEEEcCCCcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
..++.+++++.++++||+++ +.. .++.|+||||++++|||+++||+||++||||+++.....+..... ........
T Consensus 5 ~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~--~~~~~~~~ 82 (145)
T 2w4e_A 5 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYP--QPSISGVV 82 (145)
T ss_dssp CEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBS--CTTTCCCE
T ss_pred CCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcC--CCCccCce
Confidence 45777888887789988765 333 456999999999999999999999999999998865444432211 11111122
Q ss_pred EEEEEecc-CCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKP-LTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~e~~~~~W~~ 124 (124)
.++|.+.. ..+....+++|+.+++|++
T Consensus 83 ~~~f~~~~~~~~~~~~~~~E~~~~~w~~ 110 (145)
T 2w4e_A 83 FYPLLALGVTLGAAQLEDTETIERVVLP 110 (145)
T ss_dssp EEEEEEEEEEEC--------CEEEEEEE
T ss_pred EEEEEEEecccCCCCCCCCCeEEEEEEe
Confidence 22333321 1223344667889999985
No 24
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0
Probab=99.87 E-value=2.1e-21 Score=119.56 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=70.2
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCC----CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYR----KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~----~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
+...+++++.+ ++++||++|... ++|.|.||||++++||++++||+||+.||||+++....++........ ..
T Consensus 5 ~~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~--~~ 81 (140)
T 3gwy_A 5 SIEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYP--DF 81 (140)
T ss_dssp CEEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCS--SC
T ss_pred EEEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeC--Cc
Confidence 34455666666 589999999543 578999999999999999999999999999999987777766433222 22
Q ss_pred ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....++|.+....+.+ ..+|..+++|++
T Consensus 82 ~~~~~~f~~~~~~~~~--~~~E~~~~~W~~ 109 (140)
T 3gwy_A 82 EITMHAFLCHPVGQRY--VLKEHIAAQWLS 109 (140)
T ss_dssp CEEEEEEEEEECCSCC--CCCSSCEEEEEC
T ss_pred eEEEEEEEEEecCCcc--cccccceeEecc
Confidence 2344455554444332 346788999985
No 25
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=99.87 E-value=2e-21 Score=125.41 Aligned_cols=104 Identities=28% Similarity=0.435 Sum_probs=76.7
Q ss_pred CCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980 15 NYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG 93 (124)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 93 (124)
.+..+.+++.+++.+ ++++||++|... ..+.|.||||++++|||+++||+||++||||+++....++.+.... .
T Consensus 35 ~~~~~~~~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~----~ 109 (189)
T 3cng_A 35 HYQNPKVIVGCIPEW-ENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP----H 109 (189)
T ss_dssp ECCCCEEEEEEEEEE-TTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEG----G
T ss_pred cCCCCceEEEEEEEe-CCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEecC----C
Confidence 345566788888888 579999999654 5789999999999999999999999999999998877666654321 1
Q ss_pred cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 94 CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...+.++|.+......+. ..+|..+++|++
T Consensus 110 ~~~~~~~f~~~~~~~~~~-~~~E~~~~~W~~ 139 (189)
T 3cng_A 110 ISQVYMLFRAKLLDLDFF-PGIESLEVRLFG 139 (189)
T ss_dssp GTEEEEEEEEEECCSCCC-CCTTEEEEEEEC
T ss_pred CcEEEEEEEEEeCCCccC-CCccceeEEEEC
Confidence 223444455444433333 367888999985
No 26
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Probab=99.87 E-value=2.7e-21 Score=120.12 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=68.2
Q ss_pred eeEEEEEE---cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEee----cccCC
Q psy9980 21 IGAGAVVL---NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRH----THKAA 91 (124)
Q Consensus 21 ~~~~~~v~---~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~----~~~~~ 91 (124)
.++.++++ ++++++||++|.. .|.|.+|||++++|||+.+||+||++||||+++... .+..+.. .+.+.
T Consensus 6 ~~v~vvi~~~~~~~~~vLl~~r~~--~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 83 (149)
T 3son_A 6 FQVLVIPFIKTEANYQFGVLHRTD--ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFN 83 (149)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESS--SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSS
T ss_pred eEEEEEEEEecCCCeEEEEEEEcC--CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccC
Confidence 45555554 4557899999964 499999999999999999999999999999998753 2222211 11111
Q ss_pred cCcccEEEEEEeccC--CccCCCCcccccceeecC
Q psy9980 92 FGCSDIYFIVRLKPL--TQEITKDDREITESKWMD 124 (124)
Q Consensus 92 ~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~ 124 (124)
.......++|.+... .+.+.. ++|+.+++|++
T Consensus 84 ~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~ 117 (149)
T 3son_A 84 KPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVS 117 (149)
T ss_dssp SCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEEC
T ss_pred CceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeC
Confidence 212233344544444 344444 58899999986
No 27
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Probab=99.87 E-value=1.1e-21 Score=119.71 Aligned_cols=101 Identities=28% Similarity=0.373 Sum_probs=72.0
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC--ccc
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG--CSD 96 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~--~~~ 96 (124)
...+++++++++ +++||++|.. |.|.+|||++++|||+.+||+||+.||||+++....++..........+ ...
T Consensus 3 ~~~~~~~vi~~~-~~vLl~~r~~---~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 78 (134)
T 2pbt_A 3 KEFSAGGVLFKD-GEVLLIKTPS---NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFK 78 (134)
T ss_dssp EEEEEEEEEEET-TEEEEEECTT---SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred cceEEEEEEEEC-CEEEEEEeCC---CcEECCccccCCCCCHHHHHHHHHHHHHCCccEEeeeeeEEEEEeeCCCcEEEE
Confidence 456777888885 7999999953 9999999999999999999999999999999887666665432222111 122
Q ss_pred EEEEEEeccCCccCCCCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..++|.+....+.+... +|+.+++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~-~e~~~~~W~~ 105 (134)
T 2pbt_A 79 TVKYYLMKYKEGEPRPS-WEVKDAKFFP 105 (134)
T ss_dssp EEEEEEEEEEEECCCCC-TTSSEEEEEE
T ss_pred EEEEEEEEecCCCcCCC-cceeEEEEEc
Confidence 34444444444443333 3888999985
No 28
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=99.87 E-value=6.3e-22 Score=133.93 Aligned_cols=112 Identities=20% Similarity=0.263 Sum_probs=82.3
Q ss_pred CCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeec
Q psy9980 8 DSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHT 87 (124)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~ 87 (124)
+..|....++++..++.+++.++ +++||++|+....|.|++|||++++|||+++||+||++||||+++....++.....
T Consensus 128 C~~C~~~~yp~~~~~viv~v~~~-~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~ 206 (269)
T 1vk6_A 128 CSHCRERYYPQIAPCIIVAIRRD-DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW 206 (269)
T ss_dssp ESSSSCEECCCCEEEEEEEEEET-TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_pred CCCCCCEecCCCCcEEEEEEEeC-CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEec
Confidence 44566666777777666666665 79999999644579999999999999999999999999999999987766665432
Q ss_pred ccCCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 88 HKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
. . . ..++++|.+....+.+..+++|..+++|++
T Consensus 207 ~-~--~-~~~~~~f~a~~~~~~~~~~~~E~~~~~W~~ 239 (269)
T 1vk6_A 207 P-F--P-QSLMTAFMAEYDSGDIVIDPKELLEANWYR 239 (269)
T ss_dssp E-T--T-EEEEEEEEEEEEECCCCCCTTTEEEEEEEE
T ss_pred C-C--C-CEEEEEEEEEECCCCcCCCCcceEEEEEEE
Confidence 1 1 1 224444554444445555677899999985
No 29
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*
Probab=99.87 E-value=1.8e-21 Score=119.31 Aligned_cols=104 Identities=26% Similarity=0.286 Sum_probs=68.7
Q ss_pred eeeEEEEEEcC---CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeE-EEeecccCCc-Cc
Q psy9980 20 MIGAGAVVLND---KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV-AFRHTHKAAF-GC 94 (124)
Q Consensus 20 ~~~~~~~v~~~---~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~-~~~~~~~~~~-~~ 94 (124)
..++.+++++. ++++||++|+. .+|.|.+|||++++|||+++||+||+.||||+++....+. .......+.. ..
T Consensus 3 ~~~~~~vi~~~~~~~~~vLl~~r~~-~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T 1ktg_A 3 VKAAGLVIYRKLAGKIEFLLLQASY-PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGK 81 (138)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEESS-TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTE
T ss_pred eEEEEEEEEEecCCCcEEEEEEccC-CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCC
Confidence 45666667663 45899999963 4679999999999999999999999999999976654443 1111111111 22
Q ss_pred ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....++|.+..........++|+.++.|++
T Consensus 82 ~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~ 111 (138)
T 1ktg_A 82 PKSVKYWLAKLNNPDDVQLSHEHQNWKWCE 111 (138)
T ss_dssp EEEEEEEEEEECSCCCCCCCTTEEEEEEEC
T ss_pred ceEEEEEEEEecCCcccCCCchhcEeEecc
Confidence 233334444333322334567889999986
No 30
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=99.87 E-value=1.6e-21 Score=127.35 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=77.0
Q ss_pred CCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC--c
Q psy9980 15 NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA--F 92 (124)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~--~ 92 (124)
.+.++++++.++++++ +++||++|. ..|.|.||||++++|||+.+||+||++||||+++....++.+....... .
T Consensus 63 ~~~~~~~~v~~vv~~~-~~vLLv~r~--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~~ 139 (205)
T 3q1p_A 63 GYQTPKVDIRAVVFQN-EKLLFVKEK--SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPSP 139 (205)
T ss_dssp SSCCCEEEEEEEEEET-TEEEEEEC-----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSCCC
T ss_pred CCCCCcceEEEEEEEC-CEEEEEEEc--CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCCCC
Confidence 3667788888888884 799999985 3689999999999999999999999999999999888887776543211 1
Q ss_pred -CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 93 -GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....+.+++.+....+.+.. ++|..++.|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~ 171 (205)
T 3q1p_A 140 SATHVYKIFIGCEIIGGEKKT-SIETEEVEFFG 171 (205)
T ss_dssp CSSCEEEEEEEEEEEEECCCC-CTTSCCEEEEC
T ss_pred CCceEEEEEEEEEecCCccCC-CCcceEEEEEe
Confidence 12233334444433344444 37889999986
No 31
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=99.87 E-value=2.3e-21 Score=123.00 Aligned_cols=104 Identities=26% Similarity=0.400 Sum_probs=71.0
Q ss_pred cceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCccc
Q psy9980 17 AHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSD 96 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 96 (124)
....+.+++++.++ +++||++|.. .+|.|.||||++++||++++||+||++||||+++....++........... .
T Consensus 20 ~~~~~~v~~ii~~~-~~vLL~~r~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~--~ 95 (171)
T 3id9_A 20 NIMQVRVTGILIED-EKVLLVKQKV-ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPS--L 95 (171)
T ss_dssp --CEEEEEEEEEET-TEEEEEECSS-TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSC--E
T ss_pred CceEEEEEEEEEEC-CEEEEEEEEC-CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCc--E
Confidence 34566777777775 7999999964 389999999999999999999999999999999987777776544332222 2
Q ss_pred EEEEEEeccCCccCC-----CCcccccceeecC
Q psy9980 97 IYFIVRLKPLTQEIT-----KDDREITESKWMD 124 (124)
Q Consensus 97 ~~~~~~~~~~~~~~~-----~~~~e~~~~~W~~ 124 (124)
..++|.+....+... .+.+|..+++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~ 128 (171)
T 3id9_A 96 LHITFLLERIEGEITLPSNEFDHNPIHDVQMVP 128 (171)
T ss_dssp EEEEEEEEEC-------------CCCCCEEEEE
T ss_pred EEEEEEEEEcCCcccCCccCCCcCeeeeEEEEe
Confidence 222333333322222 2457888999985
No 32
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=99.87 E-value=4.7e-21 Score=122.50 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=74.1
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
...++++++++.++++||++|... .+|.|+| |||++++||++.+||+||+.||||+++.....+....... ...
T Consensus 36 ~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~--~~~ 113 (180)
T 2fkb_A 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFED--KNC 113 (180)
T ss_dssp CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEE--TTE
T ss_pred eeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecC--CCc
Confidence 345777888887789999998543 4789999 9999999999999999999999999877555554432211 112
Q ss_pred ccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....++|.+. ..+.+..+++|+.++.|++
T Consensus 114 ~~~~~~f~~~-~~~~~~~~~~E~~~~~W~~ 142 (180)
T 2fkb_A 114 RVWGALFSCV-SHGPFALQEDEVSEVCWLT 142 (180)
T ss_dssp EEEEEEEEEE-CCCCCCCCTTTEEEEEEEC
T ss_pred eEEEEEEEEe-cCCCcCCChhHhheEEEec
Confidence 2233444444 3344455678889999986
No 33
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*
Probab=99.86 E-value=2.7e-21 Score=120.26 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=70.6
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccE
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDI 97 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~ 97 (124)
.+.+++++++.++++||++|... ++|.|+||||++++||++.+||.||+.||||+++....++....+... .....
T Consensus 21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~ 98 (153)
T 3ees_A 21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYG--DVGIL 98 (153)
T ss_dssp EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEET--TEEEE
T ss_pred eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecC--CCeEE
Confidence 33445555555589999999653 789999999999999999999999999999999887666665332211 11223
Q ss_pred EEEEEeccCCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
+++|.+....+. ...+|..++.|++
T Consensus 99 ~~~~~~~~~~~~--~~~~e~~~~~W~~ 123 (153)
T 3ees_A 99 ILFYEILYWKGE--PRAKHHMMLEWIH 123 (153)
T ss_dssp EEEEEECEEESC--CCCSSSSEEEEEC
T ss_pred EEEEEEEECCCC--cCCCccceEEEec
Confidence 344444433322 3457788899985
No 34
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*
Probab=99.86 E-value=5.9e-22 Score=132.26 Aligned_cols=109 Identities=16% Similarity=0.285 Sum_probs=75.7
Q ss_pred CcceeeeEEEEEE---cCCCcEEEEEecCC-CCCCeeccceeecC--CCCHHHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980 16 YAHTMIGAGAVVL---NDKNQVLVVKEFYR-KRPQWKLPGGYVEM--SEDIGEAAVREVFEETNIRTEFHSVVAFRHTHK 89 (124)
Q Consensus 16 ~~~~~~~~~~~v~---~~~~~iLl~~r~~~-~~~~w~~PgG~~~~--gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~ 89 (124)
+.++.+++.++|+ ++++++||++|... ..|.|.+|||++++ |||+++||+||+.||||+++.....+.......
T Consensus 18 ~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~ 97 (240)
T 3gz5_A 18 FKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNS 97 (240)
T ss_dssp ---CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESS
T ss_pred cCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCc
Confidence 4566677777777 44469999999654 68999999999999 999999999999999999988666665554432
Q ss_pred CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.......+.+.|.+...........+|+.++.|++
T Consensus 98 r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~ 132 (240)
T 3gz5_A 98 RDARGWSVTVCYTALMSYQACQIQIASVSDVKWWP 132 (240)
T ss_dssp SSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEE
T ss_pred cCCCceEEEEEEEEEecccccCCCCCcccceEEec
Confidence 22223334444444433333222457788999985
No 35
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}
Probab=99.86 E-value=4.1e-21 Score=125.54 Aligned_cols=105 Identities=24% Similarity=0.437 Sum_probs=75.7
Q ss_pred CCcceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCc--
Q psy9980 15 NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAF-- 92 (124)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~-- 92 (124)
.+.++++++.++++++ +++||++|. .+.|.||||++++|||+.+||+||++||||+++....++..........
T Consensus 65 ~y~~~~~~v~~vv~~~-~~vLLvrr~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~ 140 (206)
T 3o8s_A 65 GYQTPKLDTRAAIFQE-DKILLVQEN---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAK 140 (206)
T ss_dssp ---CCEEEEEEEEEET-TEEEEEECT---TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC--
T ss_pred CCCCCCccEEEEEEEC-CEEEEEEec---CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCCCC
Confidence 3566778888888886 899999995 7999999999999999999999999999999998877777764322211
Q ss_pred -CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 93 -GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
....+.+++.+....+.+.. ++|..+++|++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~ 172 (206)
T 3o8s_A 141 SAHRVTKVFILCRLLGGEFQP-NSETVASGFFS 172 (206)
T ss_dssp ---CEEEEEEEEEEEEECCCC-CSSCSEEEEEC
T ss_pred CCceEEEEEEEEEecCCeecC-CCCceEEEEEe
Confidence 12223334444433344333 37889999986
No 36
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A
Probab=99.86 E-value=6e-21 Score=123.46 Aligned_cols=104 Identities=17% Similarity=0.082 Sum_probs=71.7
Q ss_pred eeeeEEEEEEcCCC--cEEEEEecCC---CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcC
Q psy9980 19 TMIGAGAVVLNDKN--QVLVVKEFYR---KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFG 93 (124)
Q Consensus 19 ~~~~~~~~v~~~~~--~iLl~~r~~~---~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~ 93 (124)
.+.++.+++++.++ ++||++|... ++|.|+||||++++||++++||+||++||||+++....++..........
T Consensus 33 ~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~- 111 (194)
T 1nqz_A 33 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPV- 111 (194)
T ss_dssp CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETT-
T ss_pred CceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCC-
Confidence 44555555557656 8999999642 68999999999999999999999999999999998777766553322211
Q ss_pred cccEEEEEEeccC-Ccc-CCCCcccccceeecC
Q psy9980 94 CSDIYFIVRLKPL-TQE-ITKDDREITESKWMD 124 (124)
Q Consensus 94 ~~~~~~~~~~~~~-~~~-~~~~~~e~~~~~W~~ 124 (124)
....++|.+... ... ...+.+|+.++.|++
T Consensus 112 -~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~ 143 (194)
T 1nqz_A 112 -GFHVTPVLGRIAPEALDTLRVTPEVAQIITPT 143 (194)
T ss_dssp -TEEEEEEEEEECGGGGGGCCCCTTEEEEECCB
T ss_pred -CeEEEEEEEEecCCccccCCCccceeEEEEEE
Confidence 222333333332 222 345677889999985
No 37
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Probab=99.86 E-value=6.6e-21 Score=120.96 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=66.3
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecC-C-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFY-R-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS 95 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~-~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 95 (124)
..+.++++++++ ++++||++|.. . .++.|+||||++++|||+++||+||+.||||+ +.....+......... ..
T Consensus 32 ~~~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~--~~ 107 (170)
T 1v8y_A 32 EHKPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGF--TD 107 (170)
T ss_dssp EECCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTT--BC
T ss_pred ecCCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCc--cc
Confidence 334577788888 68999998743 3 68899999999999999999999999999999 7665555544322111 12
Q ss_pred cEEEEEEeccCC-ccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPLT-QEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~ 124 (124)
...++|.+.... .....+++|+.++.|++
T Consensus 108 ~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~ 137 (170)
T 1v8y_A 108 EKTHVFLAENLKEVEAHPDEDEAIEVVWMR 137 (170)
T ss_dssp CEEEEEEEEEEEECC--------CEEEEEC
T ss_pred cEEEEEEEEeccccCCCCCCCceEEEEEEE
Confidence 233333333222 23334567889999986
No 38
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Probab=99.85 E-value=4.2e-21 Score=119.93 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=71.7
Q ss_pred CcceeeeEEEEEEcCCCc----EEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC
Q psy9980 16 YAHTMIGAGAVVLNDKNQ----VLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA 90 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~----iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~ 90 (124)
...++.++.+++.++ ++ +|+++|... ++| |.+|||++++|||+++||+||+.||||+++....++.......
T Consensus 4 ~~~~~~~~~~ii~~~-~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~- 80 (155)
T 2b06_A 4 SQLTILTNICLIEDL-ETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPL- 80 (155)
T ss_dssp GGCEEEEEEEEEEET-TTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEEC-
T ss_pred CcCcEEEEEEEEEEC-CCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeecc-
Confidence 345677788888875 56 888888544 666 9999999999999999999999999999998777776654332
Q ss_pred CcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 91 AFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..+...+.++|.+....+.+ ...|..+++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~ 112 (155)
T 2b06_A 81 DTGGRYIVICYKATEFSGTL--QSSEEGEVSWVQ 112 (155)
T ss_dssp TTSCEEEEEEEEECEEEECC--CCBTTBEEEEEE
T ss_pred CCCceEEEEEEEEEecCCCC--CCCcceeeEEee
Confidence 22233344455544333322 336778899975
No 39
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=99.85 E-value=2.3e-21 Score=124.87 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=69.9
Q ss_pred eeEEEEEEc--C-----CCcEEEEEec-------CC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980 21 IGAGAVVLN--D-----KNQVLVVKEF-------YR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR 85 (124)
Q Consensus 21 ~~~~~~v~~--~-----~~~iLl~~r~-------~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~ 85 (124)
+++.++++. + ++++||++|. .. ..|.|.+|||++++|||+++||+||++||||+++....++...
T Consensus 28 ~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~ 107 (187)
T 3i9x_A 28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVF 107 (187)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred ceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence 555555544 3 3589999993 23 7899999999999999999999999999999998887777765
Q ss_pred ecccCCcCcccEEEEEEeccCCc--cCCCCcccccceeecC
Q psy9980 86 HTHKAAFGCSDIYFIVRLKPLTQ--EITKDDREITESKWMD 124 (124)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~W~~ 124 (124)
...........+..++.+..... ......+|+.+++|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~ 148 (187)
T 3i9x_A 108 DKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFP 148 (187)
T ss_dssp CCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEE
T ss_pred cCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEe
Confidence 43322222222222333222211 1122457788899985
No 40
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=99.85 E-value=3.9e-21 Score=124.05 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=72.6
Q ss_pred eeeEEEEEEcCCCcEEEEEecCC---CCCCeec-cceeecCCCCHHHHHHHHHHHHhccCcccc-eeEEEeecc-cCCcC
Q psy9980 20 MIGAGAVVLNDKNQVLVVKEFYR---KRPQWKL-PGGYVEMSEDIGEAAVREVFEETNIRTEFH-SVVAFRHTH-KAAFG 93 (124)
Q Consensus 20 ~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~-PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~-~~~~~~~~~-~~~~~ 93 (124)
..++.+++++.++++||++|... ++|.|++ |||++++|||+++||+||++||||+++... .++...... .....
T Consensus 32 ~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 111 (190)
T 1hzt_A 32 HLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSG 111 (190)
T ss_dssp EECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTS
T ss_pred EEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCC
Confidence 35778888887789999999543 5899999 999999999999999999999999998765 433322111 11111
Q ss_pred --cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 94 --CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 94 --~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
...+.++|.+.. .+.+..+++|+.+++|++
T Consensus 112 ~~~~~~~~~f~~~~-~~~~~~~~~E~~~~~W~~ 143 (190)
T 1hzt_A 112 IVENEVCPVFAART-TSALQINDDEVMDYQWCD 143 (190)
T ss_dssp CEEEEECCEEEEEB-CSCCCCCTTTEEEEEEEC
T ss_pred CcceEEEEEEEEec-CCCCcCCccceeeEEEec
Confidence 122333444433 234445677899999986
No 41
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}
Probab=99.85 E-value=1.4e-20 Score=119.02 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=62.5
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEE
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFI 100 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (124)
+.+++++++.++++||++|+ .|.|.+|||++++|||+.+||+||+.||||+++....++..... .. ...++
T Consensus 16 ~~~~~~ii~~~~~vLL~~r~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~---~~---~~~~~ 86 (163)
T 3f13_A 16 ARRATAIIEMPDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHIT---PF---NAHKV 86 (163)
T ss_dssp EEEEEEECEETTEEEEEECC------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEEC---SS---EEEEE
T ss_pred eEEEEEEEEeCCEEEEEEEC---CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEec---CC---eEEEE
Confidence 34444444444789999984 58999999999999999999999999999999886666544321 11 33333
Q ss_pred EEeccCCccCCCCcccccceeecC
Q psy9980 101 VRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 101 ~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
|.+. ..+.+.. .+|+.+++|++
T Consensus 87 f~~~-~~~~~~~-~~E~~~~~W~~ 108 (163)
T 3f13_A 87 YLCI-AQGQPKP-QNEIERIALVS 108 (163)
T ss_dssp EEEE-C-CCCCC-CTTCCEEEEES
T ss_pred EEEE-ECCcCcc-CCCceEEEEEC
Confidence 4443 2344444 34888999985
No 42
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=8.5e-21 Score=123.15 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=66.7
Q ss_pred CcceeeeEEEEEEcCCC-cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccC-cccc--eeEEE--eeccc
Q psy9980 16 YAHTMIGAGAVVLNDKN-QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR-TEFH--SVVAF--RHTHK 89 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~-~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~-~~~~--~~~~~--~~~~~ 89 (124)
....++++++++++.++ ++||++|+ ..|.|.+|||++++|||+.+||+||+.||||++ +... .+... .....
T Consensus 41 ~~~~h~~~~~vv~~~~~~~vLL~~r~--~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 118 (197)
T 3fcm_A 41 NTIAHLTSSAFAVNKERNKFLMIHHN--IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNG 118 (197)
T ss_dssp CSSEEEEEEEEEECTTSCEEEEEEET--TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECC
T ss_pred CCCccEEEEEEEEECCCCEEEEEEec--CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecC
Confidence 44566788888888654 99999986 468999999999999999999999999999998 4421 11111 11111
Q ss_pred CC------cCcccEEEEEEeccCC-ccCCCCcccccceeecC
Q psy9980 90 AA------FGCSDIYFIVRLKPLT-QEITKDDREITESKWMD 124 (124)
Q Consensus 90 ~~------~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~ 124 (124)
.. ....++.+.|.+.... .....+++|+.+++|++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~ 160 (197)
T 3fcm_A 119 HIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIP 160 (197)
T ss_dssp EEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEE
T ss_pred ccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEcc
Confidence 00 1111222333333333 23455678999999985
No 43
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A
Probab=99.85 E-value=2.1e-20 Score=115.81 Aligned_cols=104 Identities=23% Similarity=0.229 Sum_probs=70.7
Q ss_pred eeeeEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccc--eeEEEeecc-------
Q psy9980 19 TMIGAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH--SVVAFRHTH------- 88 (124)
Q Consensus 19 ~~~~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~~~------- 88 (124)
...++.+++++. ++++||++|+.. +|.|++|||++++|||+.+||+||+.||||+++... .++......
T Consensus 8 ~~~~v~~~i~~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 86 (150)
T 2o1c_A 8 RPVSILVVIYAQDTKRVLMLQRRDD-PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSH 86 (150)
T ss_dssp CSEEEEEEEEETTTCEEEEEECSSS-TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCGG
T ss_pred CceEEEEEEEeCCCCEEEEEEecCC-CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeecc
Confidence 346788888875 489999999653 689999999999999999999999999999998753 344332111
Q ss_pred -c--CCcC-cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 89 -K--AAFG-CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 89 -~--~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
. .... .....++|.+....... ...+|+.+++|++
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W~~ 125 (150)
T 2o1c_A 87 LRHRYAPGVTRNTESWFCLALPHERQ-IVFTEHLAYKWLD 125 (150)
T ss_dssp GGGGBCTTCCEEEEEEEEEEESSCCC-CCCSSSSCEEEEE
T ss_pred cccccCCCCcceEEEEEEEEcCCCCC-cChhHhhccEeec
Confidence 0 1111 12333444444333322 2347889999985
No 44
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=99.84 E-value=4.4e-20 Score=116.71 Aligned_cols=66 Identities=26% Similarity=0.414 Sum_probs=57.5
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR 85 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~ 85 (124)
..+.++.+++++.++++||++|.. .+.|.+|||++++|||+++||.||+.||||+++....++...
T Consensus 6 ~~~~~v~~~i~~~~~~vLl~~r~~--~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~ 71 (164)
T 2kdv_A 6 GYRPNVGIVICNRQGQVMWARRFG--QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILAST 71 (164)
T ss_dssp SEEEEEEEEEECTTSEEEEEEETT--CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CCCcEEEEEEEccCCEEEEEEEcC--CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEe
Confidence 467788888998778999999853 689999999999999999999999999999998876666653
No 45
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Probab=99.84 E-value=1.2e-20 Score=118.67 Aligned_cols=59 Identities=24% Similarity=0.454 Sum_probs=52.2
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcc
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
..+.++.+++++.++++||++|.. .+|.|++|||++++|||+++||+||++||||+++.
T Consensus 12 ~~~~~v~~~i~~~~~~vLl~~r~~-~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~ 70 (165)
T 1f3y_A 12 GYRRNVGICLMNNDKKIFAASRLD-IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA 70 (165)
T ss_dssp SCCCEEEEEEECTTSCEEEEEETT-EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSE
T ss_pred ceeeeEEEEEECCCCcEEEEecCC-CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChh
Confidence 456788888888878999999953 35899999999999999999999999999999874
No 46
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Probab=99.84 E-value=1.6e-20 Score=116.24 Aligned_cols=105 Identities=21% Similarity=0.181 Sum_probs=71.5
Q ss_pred CcceeeeEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC--Cc
Q psy9980 16 YAHTMIGAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA--AF 92 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~ 92 (124)
....+.++++++.++ ++++||++|. .|.|.||||++++||++++||+||+.||||+++....++.....+.. ..
T Consensus 14 ~~~~~~~~~~vi~~~~~~~vLl~~r~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~ 90 (148)
T 2azw_A 14 TYQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHR 90 (148)
T ss_dssp CCEECCEEEEECEEGGGTEEEEEECT---TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTT
T ss_pred ceeeeeEEEEEEECCCCCeEEEEEcC---CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCC
Confidence 445667777777775 6899999983 48999999999999999999999999999999887666654321111 11
Q ss_pred C--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 93 G--CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 93 ~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
. .....++|.+....... ...+|+.++.|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~ 123 (148)
T 2azw_A 91 QTAYYNPGYFYVANTWRQLS-EPLERTNTLHWVA 123 (148)
T ss_dssp TEEEEEEEEEEEEEEEEECS-SCC-CCSEEEEEC
T ss_pred CcceEEEEEEEEEEcCcCCc-CCCCceeeEEEee
Confidence 1 11233444443332222 2346778999986
No 47
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Probab=99.84 E-value=2e-20 Score=114.82 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=66.7
Q ss_pred eEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEE
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF 99 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (124)
.+++++ +.++++||++|... ++|.|+||||++++||++++||+||+.||||+.+....++....+... ......+
T Consensus 11 ~~~~ii-~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--~~~~~~~ 87 (140)
T 2rrk_A 11 VVAAII-ERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVS--GRIIHLH 87 (140)
T ss_dssp EEEEEE-EETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEET--TEEEEEE
T ss_pred EEEEEE-EcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecC--CcEEEEE
Confidence 334444 55579999999543 689999999999999999999999999999999876666655432211 1122233
Q ss_pred EEEeccCCccCCCCcccccceeecC
Q psy9980 100 IVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 100 ~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
+|.+...... ...+|+.++.|++
T Consensus 88 ~~~~~~~~~~--~~~~e~~~~~W~~ 110 (140)
T 2rrk_A 88 AWHVPDFHGT--LQAHEHQALVWCS 110 (140)
T ss_dssp EEEESEEEEC--CCCSSCSCEEEEC
T ss_pred EEEEEeeCCC--cCCCccceeEEeC
Confidence 4444332222 2346778899985
No 48
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Probab=99.84 E-value=5.7e-21 Score=124.90 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=66.4
Q ss_pred ceeeeEEEEEEcCCCcEEEEEec-CC-CCCCeeccceeec-CCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEF-YR-KRPQWKLPGGYVE-MSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC 94 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~-~~-~~~~w~~PgG~~~-~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~ 94 (124)
....++++++++.++++||++|. .. .++.|+||||+++ +|||+++||+||+.||||+++....++...+......
T Consensus 41 ~~~~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~-- 118 (207)
T 1mk1_A 41 EHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFS-- 118 (207)
T ss_dssp EECCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTB--
T ss_pred eCCCEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCcc--
Confidence 33456777778877899999884 33 5789999999999 9999999999999999999988666555442222111
Q ss_pred ccEEEEEEeccCCccC---CCCcccccceeecC
Q psy9980 95 SDIYFIVRLKPLTQEI---TKDDREITESKWMD 124 (124)
Q Consensus 95 ~~~~~~~~~~~~~~~~---~~~~~e~~~~~W~~ 124 (124)
...+++|.+....... ..+++|+.++.|++
T Consensus 119 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~ 151 (207)
T 1mk1_A 119 DESVRVYLATGLREVGRPEAHHEEADMTMGWYP 151 (207)
T ss_dssp CCCEEEEEEEEEEECCC----------CEEEEE
T ss_pred ccEEEEEEEEccccCCCCCCCCCCceEEEEEEE
Confidence 1122233332222111 13467888999985
No 49
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=99.84 E-value=2.4e-20 Score=120.30 Aligned_cols=100 Identities=24% Similarity=0.323 Sum_probs=69.7
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc---cE
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS---DI 97 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~---~~ 97 (124)
..+.+++.++ +++||++|. ..|.|.+|||++++||++++||+||+.||||+++....++............. .+
T Consensus 5 ~v~~~vi~~~-~~vLL~~r~--~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T 3fk9_A 5 RVTNCIVVDH-DQVLLLQKP--RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWM 81 (188)
T ss_dssp EEEEEEEEET-TEEEEEECT--TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEC-CEEEEEEeC--CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEE
Confidence 3455555554 799999985 47999999999999999999999999999999998777766654332222111 14
Q ss_pred EEEEEeccCCccCCCCcccccceeecC
Q psy9980 98 YFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.++|.+....+.+.. ..+..+++|++
T Consensus 82 ~~~f~a~~~~~~~~~-~~e~~~~~W~~ 107 (188)
T 3fk9_A 82 LFTFKATEHEGEMLK-QSPEGKLEWKK 107 (188)
T ss_dssp EEEEEESCEESCCCS-EETTEEEEEEE
T ss_pred EEEEEEECCCCCCcC-CCCCEeEEEEE
Confidence 455555544443332 34446888974
No 50
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}
Probab=99.83 E-value=1.9e-20 Score=116.86 Aligned_cols=102 Identities=22% Similarity=0.358 Sum_probs=70.4
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCc--c
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGC--S 95 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~--~ 95 (124)
..+.++++++.++ +++||++| .|.|.||||++++||++++||+||+.||||+++....++............ .
T Consensus 17 ~~~~~~~~ii~~~-~~vLl~~r----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 91 (154)
T 2pqv_A 17 VFGVRATALIVQN-HKLLVTKD----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYH 91 (154)
T ss_dssp EEEEEEEECCEET-TEEEEEEE----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEE
T ss_pred eEeEEEEEEEEEC-CEEEEEec----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcce
Confidence 4456777777775 79999999 589999999999999999999999999999998876666554322111111 1
Q ss_pred cEEEEEEeccCCccCC--CCcccccceeecC
Q psy9980 96 DIYFIVRLKPLTQEIT--KDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~ 124 (124)
.+.++|.+........ ..++|..+++|++
T Consensus 92 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~ 122 (154)
T 2pqv_A 92 NIEFHYLVDLLEDAPLTMQEDEKRQPCEWID 122 (154)
T ss_dssp EEEEEEEEEESSCCCSEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEecCCCCcccCCCCceeeEEEeE
Confidence 2333444443333221 1345678899975
No 51
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=6.4e-21 Score=118.02 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=47.8
Q ss_pred eeEEEEEEcCC-CcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980 21 IGAGAVVLNDK-NQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 21 ~~~~~~v~~~~-~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~ 78 (124)
..+++++++.+ +++||++|. ..|.|.+|||++++|||+.+||+||+.||||+++..
T Consensus 5 ~~~~~~i~~~~~~~vLl~~r~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 61 (146)
T 2jvb_A 5 PVRGAAIFNENLSKILLVQGT--ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD 61 (146)
T ss_dssp CCEEEEEBCTTSSEEEEECCS--SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS
T ss_pred EEEEEEEEeCCCCEEEEEEEc--CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH
Confidence 34566666754 899999885 368999999999999999999999999999998863
No 52
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6
Probab=99.83 E-value=2.2e-19 Score=121.89 Aligned_cols=112 Identities=19% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCCCCcceeeeEEEEEEc--C---CCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980 12 RIPNYAHTMIGAGAVVLN--D---KNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR 85 (124)
Q Consensus 12 ~~~~~~~~~~~~~~~v~~--~---~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~ 85 (124)
.++.+..+.+++.++|+. + ++++||++|... ..|.|.+|||++++||++++||+||+.||||+++....+..+.
T Consensus 31 ~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~ 110 (273)
T 2fml_A 31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH 110 (273)
T ss_dssp CCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEE
T ss_pred hcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEE
Confidence 334567777787777775 2 348999999654 6799999999999999999999999999999876644333322
Q ss_pred ecc-cCCc-CcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 86 HTH-KAAF-GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 86 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
... .... ....+.++|.+...... ....+|..++.|++
T Consensus 111 ~~~~~~r~~~~~~~~~~y~a~~~~~~-~~~~~E~~~~~W~~ 150 (273)
T 2fml_A 111 SFSRPDRDPRGWVVTVSYLAFIGEEP-LIAGDDAKEVHWFN 150 (273)
T ss_dssp EECCTTSSTTSSEEEEEEEEECCCCC-CCCCTTEEEEEEEE
T ss_pred EEcCCCCCCCceEEEEEEEEEeCCCC-CCCCcceeeEEEEE
Confidence 111 1111 12233344444333322 33567888999985
No 53
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Probab=99.83 E-value=5.9e-21 Score=115.65 Aligned_cols=97 Identities=21% Similarity=0.291 Sum_probs=64.9
Q ss_pred EEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEE
Q psy9980 24 GAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIV 101 (124)
Q Consensus 24 ~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (124)
++++.+.++++||++|... ++|.|+||||++++||++.+||.||+.||||+.+....++....+. ... .....++|
T Consensus 8 ~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~-~~~-~~~~~~~~ 85 (129)
T 1mut_A 8 VGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYE-FPD-RHITLWFW 85 (129)
T ss_dssp CEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCC-CSS-CEEECCCE
T ss_pred EEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEe-cCC-ceEEEEEE
Confidence 3444565689999999644 6899999999999999999999999999999998755544433211 111 11122233
Q ss_pred EeccCCccCCCCcccccceeecC
Q psy9980 102 RLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 102 ~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.+...... ...+|..++.|++
T Consensus 86 ~~~~~~~~--~~~~e~~~~~W~~ 106 (129)
T 1mut_A 86 LVERWEGE--PWGKEGQPGEWMS 106 (129)
T ss_dssp EEEECSSC--CCCCSSCCCEEEE
T ss_pred EEEccCCc--cCCcccceeEEeC
Confidence 33332222 2346778888974
No 54
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Probab=99.82 E-value=5.6e-20 Score=119.18 Aligned_cols=66 Identities=29% Similarity=0.450 Sum_probs=53.6
Q ss_pred eeeEEEEEE--cCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEee
Q psy9980 20 MIGAGAVVL--NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRH 86 (124)
Q Consensus 20 ~~~~~~~v~--~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~ 86 (124)
...++++++ ++++++||++|.. .+|.|.||||++++||++++||+||++||||+++....++....
T Consensus 40 ~~~~~~vi~~~~~~~~vLLv~r~~-~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~ 107 (194)
T 2fvv_A 40 KKRAACLCFRSESEEEVLLVSSSR-HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFE 107 (194)
T ss_dssp EEEEEEEEESSTTCCEEEEEECSS-CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred cccEEEEEEEECCCCEEEEEEEeC-CCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEE
Confidence 344555555 3568999999853 35899999999999999999999999999999988776666654
No 55
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Probab=99.82 E-value=6.9e-20 Score=119.09 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=68.2
Q ss_pred eeEEEEEEcCCCcEEEEEec-CC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEE
Q psy9980 21 IGAGAVVLNDKNQVLVVKEF-YR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY 98 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~-~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 98 (124)
.++++++++++ ++||++|. .+ .++.|+||||++++||++++||+||+.||||+++....++.......... ...+
T Consensus 50 ~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~--~~~~ 126 (198)
T 1vhz_A 50 EAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYF--SSKM 126 (198)
T ss_dssp CEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTC--CCEE
T ss_pred CEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCcc--CcEE
Confidence 35666667765 99999873 33 56789999999999999999999999999999988666655543222111 1223
Q ss_pred EEEEeccCC-ccCCCCcccccceeecC
Q psy9980 99 FIVRLKPLT-QEITKDDREITESKWMD 124 (124)
Q Consensus 99 ~~~~~~~~~-~~~~~~~~e~~~~~W~~ 124 (124)
.+|.+.... .....+++|..++.|++
T Consensus 127 ~~f~a~~~~~~~~~~~~~E~~~~~w~~ 153 (198)
T 1vhz_A 127 NIVVAQDLYPESLEGDEPEPLPQVRWP 153 (198)
T ss_dssp EEEEEEEEEECCCCCCCSSCCCEEEEE
T ss_pred EEEEEEeCCcccCCCCCCceEEEEEEE
Confidence 333333222 22234567788889974
No 56
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.82 E-value=1.8e-19 Score=125.23 Aligned_cols=108 Identities=24% Similarity=0.343 Sum_probs=68.9
Q ss_pred CcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEE----E-eeccc
Q psy9980 16 YAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA----F-RHTHK 89 (124)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~----~-~~~~~ 89 (124)
++++.+++.+++.++ +++||++|+.. .+|.|++|||++++|||+++||+||+.||||+++....+++ . .....
T Consensus 199 ~~~~~~~v~~vi~~~-~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 277 (341)
T 2qjo_A 199 YAPTFITTDAVVVQA-GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAP 277 (341)
T ss_dssp SCCCEEEEEEEEEET-TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCT
T ss_pred CCCCceEEEEEEEeC-CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCC
Confidence 566678888888864 79999999654 57999999999999999999999999999999987544321 1 11111
Q ss_pred CCc-CcccEEEEEEeccCCccC-C-CCcccccceeecC
Q psy9980 90 AAF-GCSDIYFIVRLKPLTQEI-T-KDDREITESKWMD 124 (124)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~-~-~~~~e~~~~~W~~ 124 (124)
... ....+..+|.+....+.. . .+++|+.+++|++
T Consensus 278 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~ 315 (341)
T 2qjo_A 278 GRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMS 315 (341)
T ss_dssp TSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEE
T ss_pred CCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEee
Confidence 111 112233334443333222 2 3567889999985
No 57
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Probab=99.81 E-value=1.1e-19 Score=118.98 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=65.9
Q ss_pred eeeEEEEEEc-CCCcEEEEEe-cCC-C-----CCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCC
Q psy9980 20 MIGAGAVVLN-DKNQVLVVKE-FYR-K-----RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAA 91 (124)
Q Consensus 20 ~~~~~~~v~~-~~~~iLl~~r-~~~-~-----~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~ 91 (124)
..++++++++ .++++||+++ +.+ . ++.|++|||++++||++++||+||+.||||+++.....+......+..
T Consensus 57 ~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~ 136 (209)
T 1g0s_A 57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG 136 (209)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred CCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCc
Confidence 4577777777 5678999876 333 2 578999999999999999999999999999998765555543222211
Q ss_pred cCcccEEEEEEecc-C---Cc-cCCCCcccccceeecC
Q psy9980 92 FGCSDIYFIVRLKP-L---TQ-EITKDDREITESKWMD 124 (124)
Q Consensus 92 ~~~~~~~~~~~~~~-~---~~-~~~~~~~e~~~~~W~~ 124 (124)
....+++|.+.. . .+ ....+.+|..++.|++
T Consensus 137 --~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~ 172 (209)
T 1g0s_A 137 --TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVS 172 (209)
T ss_dssp --BCCEEEEEEEECCGGGCC--------CCSCEEEEEE
T ss_pred --cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEE
Confidence 112233333332 1 11 1123556778899975
No 58
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.81 E-value=2e-19 Score=125.60 Aligned_cols=111 Identities=22% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCCCcceeeeEEEEEEcCCCcEEEEEecCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCccccee----EEEe-e
Q psy9980 13 IPNYAHTMIGAGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV----VAFR-H 86 (124)
Q Consensus 13 ~~~~~~~~~~~~~~v~~~~~~iLl~~r~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~----~~~~-~ 86 (124)
...+++...++.+++.++ +++||++|+.. .+|.|++|||++++|||+++||+||++||||+++....+ .... .
T Consensus 201 ~~~~~~~~~~v~~vv~~~-~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~ 279 (352)
T 2qjt_B 201 KAPFKPNFVTVDALVIVN-DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVF 279 (352)
T ss_dssp SSSSCCEEEEEEEEEEET-TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEE
T ss_pred ccCCCCCceEEEEEEEEC-CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEe
Confidence 344667778888888864 79999999654 569999999999999999999999999999999874332 1111 1
Q ss_pred cccCCc-CcccEEEEEEeccCCcc--CC-CCcccccceeecC
Q psy9980 87 THKAAF-GCSDIYFIVRLKPLTQE--IT-KDDREITESKWMD 124 (124)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~e~~~~~W~~ 124 (124)
.+.... ....+..+|.+....+. +. ...+|+.+++|++
T Consensus 280 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~ 321 (352)
T 2qjt_B 280 DYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWIS 321 (352)
T ss_dssp CCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEE
T ss_pred cCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEec
Confidence 111111 11123333333322222 22 2467889999985
No 59
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}
Probab=99.81 E-value=2.1e-20 Score=122.14 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=64.9
Q ss_pred eEEEEEEcCCCcEEEEEecCC-----CCCCeec-cceeecCCCC--H----HHHHHHHHHHHhccCcccceeEEEeeccc
Q psy9980 22 GAGAVVLNDKNQVLVVKEFYR-----KRPQWKL-PGGYVEMSED--I----GEAAVREVFEETNIRTEFHSVVAFRHTHK 89 (124)
Q Consensus 22 ~~~~~v~~~~~~iLl~~r~~~-----~~~~w~~-PgG~~~~gEs--~----~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~ 89 (124)
..++++.+ +|++|+++|... ..|.|.+ |||++++||| + ++||+||++||||+++....++++.....
T Consensus 70 i~~~II~~-~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~ 148 (211)
T 3e57_A 70 IPYVVIMD-GDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSST 148 (211)
T ss_dssp EEEEEEEE-TTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCS
T ss_pred EEEEEEEE-CCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccC
Confidence 34444444 589999999543 2378998 9999999998 5 99999999999999888777777654322
Q ss_pred CCcCcccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 90 AAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
......++.++|.+....+. +..+|..+++|++
T Consensus 149 ~~~~~~~l~~~f~~~~~~g~--~~~~E~~~~~W~~ 181 (211)
T 3e57_A 149 TEVSRVHLGALFLGRGKFFS--VKEKDLFEWELIK 181 (211)
T ss_dssp SHHHHTEEEEEEEEEEEEEE--ESCTTTCEEEEEE
T ss_pred CCCCeEEEEEEEEEEeCCce--eCCCCeEEEEEEE
Confidence 22222234344555433332 3456778899974
No 60
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*
Probab=99.80 E-value=3.2e-19 Score=116.98 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=60.5
Q ss_pred CcEEEEEe-cCC-CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcccEEEEEEeccCCc-
Q psy9980 32 NQVLVVKE-FYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQ- 108 (124)
Q Consensus 32 ~~iLl~~r-~~~-~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 108 (124)
+++||+++ +.. .++.|+||||++++||++++||+||++||||+++....++...............+|++.+.....
T Consensus 77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~ 156 (212)
T 2dsc_A 77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAE 156 (212)
T ss_dssp CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGG
T ss_pred cEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccc
Confidence 47888876 333 467899999999999999999999999999999875555433222111111122223333222211
Q ss_pred ----cCCCCcccccceeecC
Q psy9980 109 ----EITKDDREITESKWMD 124 (124)
Q Consensus 109 ----~~~~~~~e~~~~~W~~ 124 (124)
....+++|+.++.|++
T Consensus 157 ~~~~~~~~~~~E~~~~~w~~ 176 (212)
T 2dsc_A 157 NARPKPKPGDGEFVEVISLP 176 (212)
T ss_dssp GSSCCCCCCTTCCCEEEEEE
T ss_pred ccCCCCCCCCCceEEEEEEE
Confidence 2334567889999985
No 61
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=118.82 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=63.8
Q ss_pred cCCCCCCCCCCCCcceeeeEEEEEEc-CCCcEEEEEecC-C-C-------------------------------CCCeec
Q psy9980 4 WLPDDSESRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFY-R-K-------------------------------RPQWKL 49 (124)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~iLl~~r~~-~-~-------------------------------~~~w~~ 49 (124)
..+++...... ......++++++++ .++++||+++.. . . ++.|+|
T Consensus 21 ~~~~G~~~~~e-~v~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wel 99 (218)
T 3q91_A 21 QSMNGAQKSWD-FMKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVEL 99 (218)
T ss_dssp ---------------CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEEC
T ss_pred ECCCCCEEEEE-EEEcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEEC
Confidence 34566554444 33335677778887 457899988632 1 2 689999
Q ss_pred cceeecC-CCCHHHHHHHHHHHHhccCc--ccceeEEEeecccCCcCcccEEEEEEeccC------CccCCCCcccccce
Q psy9980 50 PGGYVEM-SEDIGEAAVREVFEETNIRT--EFHSVVAFRHTHKAAFGCSDIYFIVRLKPL------TQEITKDDREITES 120 (124)
Q Consensus 50 PgG~~~~-gEs~~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~ 120 (124)
|||++++ |||+++||+||+.||||+++ .....+.......... . ..+++|.+... .+....+++|..++
T Consensus 100 PgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~-~-~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev 177 (218)
T 3q91_A 100 CAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLT-G-SRQTMFYTEVTDAQRSGPGGGLVEEGELIEV 177 (218)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---C-C-EEEEEEEEEECGGGBCC---------CCEEE
T ss_pred CcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEecCCCcc-c-eEEEEEEEEECCcccccCCCCCCCCCcEEEE
Confidence 9999999 99999999999999999998 4444444332211111 1 22223333221 12234456788999
Q ss_pred eecC
Q psy9980 121 KWMD 124 (124)
Q Consensus 121 ~W~~ 124 (124)
.|++
T Consensus 178 ~wv~ 181 (218)
T 3q91_A 178 VHLP 181 (218)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 62
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A
Probab=99.80 E-value=8e-20 Score=114.47 Aligned_cols=58 Identities=36% Similarity=0.354 Sum_probs=50.0
Q ss_pred eeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccccee
Q psy9980 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81 (124)
Q Consensus 21 ~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~ 81 (124)
+++++++++ ++++||++|+. .|.|.+|||++++|||+++||+||+.||||+++....+
T Consensus 2 ~~~~~vi~~-~~~vLL~~r~~--~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~ 59 (156)
T 1k2e_A 2 IVTSGVLVE-NGKVLLVKHKR--LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF 59 (156)
T ss_dssp EEEEEECEE-TTEEEEEECTT--TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCC
T ss_pred eEEEEEEEE-CCEEEEEEEcC--CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccc
Confidence 456777777 58999999863 68999999999999999999999999999999875444
No 63
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Probab=99.80 E-value=4.9e-19 Score=114.44 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=65.4
Q ss_pred eeeEEEEEEc-CCCcEEEEEecCC--------CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccC
Q psy9980 20 MIGAGAVVLN-DKNQVLVVKEFYR--------KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKA 90 (124)
Q Consensus 20 ~~~~~~~v~~-~~~~iLl~~r~~~--------~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~ 90 (124)
..++++++++ .++++||+++... .++.|+||||+++ |||+++||+||+.||||+++.....+........
T Consensus 45 ~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~ 123 (191)
T 3o6z_A 45 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG 123 (191)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTT
T ss_pred CCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCC
Confidence 3466777777 4579999887421 4678999999999 9999999999999999999876665554432221
Q ss_pred CcCcccEEEEEEeccCCcc-----CCCCcccccceeecC
Q psy9980 91 AFGCSDIYFIVRLKPLTQE-----ITKDDREITESKWMD 124 (124)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~W~~ 124 (124)
. ....+++|.+...... ... ++|..++.|++
T Consensus 124 ~--~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~ 159 (191)
T 3o6z_A 124 G--VTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELP 159 (191)
T ss_dssp T--BCCEEEEEEEECCTTCC---------CCSSEEEEEE
T ss_pred c--cCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEE
Confidence 1 1223333333322111 122 67888999985
No 64
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*
Probab=99.79 E-value=2.4e-19 Score=121.56 Aligned_cols=58 Identities=29% Similarity=0.494 Sum_probs=49.4
Q ss_pred eeeEEEEEEcC-CCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCccc
Q psy9980 20 MIGAGAVVLND-KNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 20 ~~~~~~~v~~~-~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~ 78 (124)
..++++++++. ++++||++|.. .+|.|.+|||++++|||+++||+||+.||||+++..
T Consensus 101 v~~v~avv~~~~~~~vLLv~r~~-~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~ 159 (271)
T 2a6t_A 101 IPVRGAIMLDMSMQQCVLVKGWK-ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 159 (271)
T ss_dssp CCEEEEEEBCSSSSEEEEEEESS-TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred CCeEEEEEEECCCCEEEEEEEeC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcee
Confidence 34566777774 48999999954 468999999999999999999999999999998875
No 65
>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3
Probab=99.79 E-value=6.8e-19 Score=110.02 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=67.1
Q ss_pred ceeeeEEEEEEcC---CCcEEEEEecCC--CCCCeeccceeecCCCCHH-HHHHHHHHHHhc-cCcccceeEEEeecccC
Q psy9980 18 HTMIGAGAVVLND---KNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIG-EAAVREVFEETN-IRTEFHSVVAFRHTHKA 90 (124)
Q Consensus 18 ~~~~~~~~~v~~~---~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~-~aa~RE~~EE~G-l~~~~~~~~~~~~~~~~ 90 (124)
+.+..+++++.++ ++++||+||... ++|.|+||||++++||++. +||+||+.|||| +.+.....+.... +
T Consensus 17 ~~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~---~ 93 (155)
T 1x51_A 17 REESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVV---H 93 (155)
T ss_dssp TEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBC---C
T ss_pred CeEEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEE---E
Confidence 4455566666653 479999999543 7899999999999999996 999999999999 8776544433221 1
Q ss_pred CcCcc-cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 91 AFGCS-DIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
.+... ..+.+|.+....+.+ ...|..++.|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~ 126 (155)
T 1x51_A 94 TFSHIKLTYQVYGLALEGQTP--VTTVPPGARWLT 126 (155)
T ss_dssp BCSSCEEEEEEEEEECSSCCC--CCCCCTTEEEEE
T ss_pred ecCCccEEEEEEEEEEcCCCC--CCCCCCccEEcc
Confidence 12121 223344444333322 234667888974
No 66
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=99.77 E-value=7.2e-18 Score=112.81 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=73.3
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeeccc-eeecCC------CCH---HHHHHHHHHHHhccCccc-----c
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLPG-GYVEMS------EDI---GEAAVREVFEETNIRTEF-----H 79 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~Pg-G~~~~g------Es~---~~aa~RE~~EE~Gl~~~~-----~ 79 (124)
..+.++.+++++.+|++||+||... ++|.|++|+ |++++| |++ ++||+||+.||||+.+.. .
T Consensus 68 ~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l 147 (246)
T 2pny_A 68 LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDI 147 (246)
T ss_dssp CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGS
T ss_pred cEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCcccc
Confidence 3456788888887789999999543 689999995 999999 887 999999999999998652 2
Q ss_pred eeEEEeecc-cCCcC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 80 SVVAFRHTH-KAAFG--CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 80 ~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..+....+. ..... ...+.++|.+.. ...+.++++|+.+++|++
T Consensus 148 ~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~ 194 (246)
T 2pny_A 148 VFMTIYHHKAKSDRIWGEHEICYLLLVRK-NVTLNPDPSETKSILYLS 194 (246)
T ss_dssp EEEEEEEEEEESSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEEC
T ss_pred EEEEEEEEEecCCCceeeeEEEEEEEEEE-CCCCCCChHHeeEEEEEe
Confidence 333332211 11111 122444554443 334556778999999986
No 67
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=99.77 E-value=9.9e-18 Score=111.49 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=73.1
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCC---CCCCeecc-ceeecCC------CC---HHHHHHHHHHHHhccCccc-----c
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYR---KRPQWKLP-GGYVEMS------ED---IGEAAVREVFEETNIRTEF-----H 79 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~---~~~~w~~P-gG~~~~g------Es---~~~aa~RE~~EE~Gl~~~~-----~ 79 (124)
..+.++.+++++.+|++||+||... ++|.|++| ||++++| |+ +++||+||+.||||+.+.. .
T Consensus 57 ~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l 136 (235)
T 2dho_A 57 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEI 136 (235)
T ss_dssp CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGS
T ss_pred ceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhc
Confidence 3456788888887789999999543 68999999 5999999 87 4999999999999998652 2
Q ss_pred eeEEEeecc-cCCcC--cccEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 80 SVVAFRHTH-KAAFG--CSDIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 80 ~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..+....+. ..... ...+.++|.+.. ...+.++++|+.+++|++
T Consensus 137 ~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~~~~~~~~Ev~~~~wv~ 183 (235)
T 2dho_A 137 NYLTRIHYKAQSDGIWGEHEIDYILLVRM-NVTLNPDPNEIKSYCYVS 183 (235)
T ss_dssp EEEEEEEEEEECSSSBEEEEEEEEEEEEC-CCCCCCCTTTEEEEEEEC
T ss_pred EEEEEEEEeccCCCccceeEEEEEEEEEE-CCCCcCChHHEEEEEEEc
Confidence 333332211 11111 122444554443 334556778999999986
No 68
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=99.76 E-value=4.8e-19 Score=116.20 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=43.4
Q ss_pred EcCCCcEEEEEecCCCCCCeeccceeecCCC-CHHHHHHHHHHHHhccCcccc
Q psy9980 28 LNDKNQVLVVKEFYRKRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEFH 79 (124)
Q Consensus 28 ~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~~ 79 (124)
.+.++++||++| .+|.|+||||++++|| |+++||+||+.||||+.+...
T Consensus 52 ~~~~~~vLl~~r---~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~ 101 (212)
T 1u20_A 52 VPIRRVLLMMMR---FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV 101 (212)
T ss_dssp EECCEEEEEEEE---TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred EecCCEEEEEEe---CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcccc
Confidence 345568999888 5799999999999999 999999999999999998754
No 69
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.73 E-value=1.5e-17 Score=117.08 Aligned_cols=99 Identities=14% Similarity=0.049 Sum_probs=68.5
Q ss_pred ceeeeEEEEEEcCCCcEEEEEecCC--CCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEeecccCCcCcc
Q psy9980 18 HTMIGAGAVVLNDKNQVLVVKEFYR--KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCS 95 (124)
Q Consensus 18 ~~~~~~~~~v~~~~~~iLl~~r~~~--~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~ 95 (124)
+....+++++.+.+|++||+||... ++|.|+||||++++| ++++|+.||+.||||+++....++....+.... ..
T Consensus 238 ~~~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h--~~ 314 (369)
T 3fsp_A 238 KQVPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSH--LV 314 (369)
T ss_dssp EEEEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSS--EE
T ss_pred ceEEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcce--EE
Confidence 3445566777777789999999654 789999999999999 999999999999999998765554443222111 11
Q ss_pred cEEEEEEeccCCccCCCCcccccceeecC
Q psy9980 96 DIYFIVRLKPLTQEITKDDREITESKWMD 124 (124)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~ 124 (124)
..+.+|.+....+ ..|..+++|++
T Consensus 315 ~~~~~~~~~~~~~-----~~e~~~~~Wv~ 338 (369)
T 3fsp_A 315 WQLTVFPGRLVHG-----GPVEEPYRLAP 338 (369)
T ss_dssp EEEEEEEEEECCS-----SCCCTTEEEEE
T ss_pred EEEEEEEEEEcCC-----CCCccccEEee
Confidence 2233333333222 35667888874
No 70
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.73 E-value=1.5e-17 Score=116.77 Aligned_cols=54 Identities=31% Similarity=0.377 Sum_probs=46.6
Q ss_pred CCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCcccceeEEEe
Q psy9980 30 DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFR 85 (124)
Q Consensus 30 ~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~ 85 (124)
++.++||++|. ..+.|.||||++++|||+++||+||++||||+++....++...
T Consensus 36 ~~~~vLLv~r~--~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~ 89 (364)
T 3fjy_A 36 DSIEVCIVHRP--KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEV 89 (364)
T ss_dssp TTEEEEEEEET--TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEE
T ss_pred CceEEEEEEcC--CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceE
Confidence 33489999994 3599999999999999999999999999999998876666654
No 71
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=99.67 E-value=6.1e-16 Score=105.82 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=72.8
Q ss_pred cceeeeEEEEEEcCCC---cEEEEEecCC---CCCCee-ccceeecCCCCHHHHHHHHHHHHhccCcccc---eeEEEee
Q psy9980 17 AHTMIGAGAVVLNDKN---QVLVVKEFYR---KRPQWK-LPGGYVEMSEDIGEAAVREVFEETNIRTEFH---SVVAFRH 86 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~~---~iLl~~r~~~---~~~~w~-~PgG~~~~gEs~~~aa~RE~~EE~Gl~~~~~---~~~~~~~ 86 (124)
.....++-+.+++.++ ++|++||+.. ++|.|+ .++|++++||++++||+||+.||+|+..... ...+...
T Consensus 115 G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~ 194 (300)
T 3dup_A 115 GVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAIT 194 (300)
T ss_dssp TCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEE
T ss_pred ceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEE
Confidence 3445667777777555 8999999533 899995 8999999999999999999999999987532 1222211
Q ss_pred -cccCCcC-cccEEEEEEeccCC-ccCCCCcccccceeecC
Q psy9980 87 -THKAAFG-CSDIYFIVRLKPLT-QEITKDDREITESKWMD 124 (124)
Q Consensus 87 -~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~ 124 (124)
.+....+ ...+.++|.+.... ..+.++++|+.+++|++
T Consensus 195 y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~ 235 (300)
T 3dup_A 195 YCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWP 235 (300)
T ss_dssp EEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEE
T ss_pred EEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEEC
Confidence 1111111 22344555544332 23456789999999985
No 72
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Probab=99.62 E-value=8.9e-16 Score=100.97 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=38.3
Q ss_pred cEEEEEecCCCCCCeeccceeecCCC-CHHHHHHHHHHHHhccCccc
Q psy9980 33 QVLVVKEFYRKRPQWKLPGGYVEMSE-DIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 33 ~iLl~~r~~~~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl~~~~ 78 (124)
++|++.|. ++.|+||||++++|| ++++||+||++||||+++..
T Consensus 66 ~~ll~~r~---~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~ 109 (217)
T 2xsq_A 66 AILMQMRF---DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAA 109 (217)
T ss_dssp EEEEEEET---TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGG
T ss_pred cEEEEEcc---CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCcc
Confidence 56777663 689999999999999 99999999999999998874
No 73
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*
Probab=99.62 E-value=3e-15 Score=102.42 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=38.5
Q ss_pred cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhccCc
Q psy9980 33 QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT 76 (124)
Q Consensus 33 ~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl~~ 76 (124)
++||++|.. .|.|.+|||++++||++.+||+||+.||||+.+
T Consensus 140 ~vLl~~r~~--~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~ 181 (292)
T 1q33_A 140 QFVAIKRKD--CGEWAIPGGMVDPGEKISATLKREFGEEALNSL 181 (292)
T ss_dssp EEEEEECTT--TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGG
T ss_pred EEEEEEecC--CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCcc
Confidence 599999964 489999999999999999999999999999983
No 74
>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}
Probab=99.60 E-value=6.8e-15 Score=97.51 Aligned_cols=61 Identities=28% Similarity=0.314 Sum_probs=48.8
Q ss_pred cceeeeEEEEEEcC--CC--cEEEEEecCC---CCCCeeccceeecCCCC--------------------HHHHHHHHHH
Q psy9980 17 AHTMIGAGAVVLND--KN--QVLVVKEFYR---KRPQWKLPGGYVEMSED--------------------IGEAAVREVF 69 (124)
Q Consensus 17 ~~~~~~~~~~v~~~--~~--~iLl~~r~~~---~~~~w~~PgG~~~~gEs--------------------~~~aa~RE~~ 69 (124)
..++.++.++++++ ++ ++||+||... .+|.|.||||+++++|+ +..||+||++
T Consensus 5 ~~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~ 84 (232)
T 3qsj_A 5 TDIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETA 84 (232)
T ss_dssp CCEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHH
Confidence 44566666666653 23 8999999654 48999999999999986 5899999999
Q ss_pred HHhccCcc
Q psy9980 70 EETNIRTE 77 (124)
Q Consensus 70 EE~Gl~~~ 77 (124)
||||+.+.
T Consensus 85 EE~Gl~l~ 92 (232)
T 3qsj_A 85 EEIGWLLA 92 (232)
T ss_dssp HHHSCCCS
T ss_pred HHhCceec
Confidence 99999764
No 75
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=87.32 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=47.7
Q ss_pred cceeeeEEEEEEcCC-C----------cEEEEEecCCCCCCeeccceeecCCC-CHHHHHHHHHHHHhcc-CcccceeEE
Q psy9980 17 AHTMIGAGAVVLNDK-N----------QVLVVKEFYRKRPQWKLPGGYVEMSE-DIGEAAVREVFEETNI-RTEFHSVVA 83 (124)
Q Consensus 17 ~~~~~~~~~~v~~~~-~----------~iLl~~r~~~~~~~w~~PgG~~~~gE-s~~~aa~RE~~EE~Gl-~~~~~~~~~ 83 (124)
+..+.++-++++.++ + .+|++.| ..|.|+||||+||+|| |+++|+.||+.||+|+ .+....+..
T Consensus 18 ~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R---~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~ 94 (214)
T 3kvh_A 18 PGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMR---FDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLS 94 (214)
T ss_dssp TTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEE---TTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEE
T ss_pred cCccEeeEEEEEcCCccccccccchhheEEEeee---eCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEE
Confidence 345667777777643 2 2566666 6799999999999999 9999999999999997 566544443
No 76
>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}
Probab=99.37 E-value=4.2e-12 Score=87.72 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=48.4
Q ss_pred eeeeEEEEEEcCCCcEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHh-ccCcccceeEEEeec
Q psy9980 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEET-NIRTEFHSVVAFRHT 87 (124)
Q Consensus 19 ~~~~~~~~v~~~~~~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~-Gl~~~~~~~~~~~~~ 87 (124)
+++.+.+++.++ |+|||+ . ..| |.+|||.++ ++..++|+||++||+ |+++....+++++..
T Consensus 182 p~~~vgaii~~~-g~vLL~-~---~~G-W~LPG~~~~--~~~~~~a~RE~~EEttGl~v~~~~L~~v~~~ 243 (321)
T 3rh7_A 182 GEIRLGAVLEQQ-GAVFLA-G---NET-LSLPNCTVE--GGDPARTLAAYLEQLTGLNVTIGFLYSVYED 243 (321)
T ss_dssp SCEEEEEEEESS-SCEEEB-C---SSE-EBCCEEEES--SSCHHHHHHHHHHHHHSSCEEEEEEEEEEEC
T ss_pred CcceEEEEEEEC-CEEEEe-e---CCC-ccCCcccCC--CChhHHHHHHHHHHhcCCEEeeceEEEEEEc
Confidence 567778888876 799999 2 357 999988654 444459999999997 999999999988754
No 77
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=99.35 E-value=3.6e-12 Score=82.09 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=41.7
Q ss_pred eeeEEEEEE-cCCC--cEEEEEecCCCCCCeeccceeecCCCCHHHHHHHHHHHHhcc
Q psy9980 20 MIGAGAVVL-NDKN--QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74 (124)
Q Consensus 20 ~~~~~~~v~-~~~~--~iLl~~r~~~~~~~w~~PgG~~~~gEs~~~aa~RE~~EE~Gl 74 (124)
+.+|.++++ +..+ ++||+|+ ..+.|.||||.+++||++++|+.||+.||+|+
T Consensus 58 R~sV~avil~~~~~~phVLLlq~---~~~~f~LPGGkle~gE~~~eaL~REL~EELg~ 112 (208)
T 3bho_A 58 RRTVEGVLIVHEHRLPHVLLLQL---GTTFFKLPGGELNPGEDEVEGLKRLMTEILGR 112 (208)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEE---ETTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEEEcCCCCcEEEEEEc---CCCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence 445555444 3323 6999998 35699999999999999999999999999995
No 78
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=57.99 E-value=1.4 Score=26.56 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=24.0
Q ss_pred ccCCCCCCCCCCCCcceeeeEEEEEEcCCCcEEEEEecC
Q psy9980 3 KWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFY 41 (124)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iLl~~r~~ 41 (124)
+|-.+......|.....-....++|+|.+|++|-.+|.-
T Consensus 22 qW~~nkl~I~~P~n~~~n~ptLvlIYDe~G~lLW~qr~v 60 (148)
T 3bqa_A 22 KWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV 60 (148)
T ss_dssp EEETTEEECCCCHHHHTTCSCEEEEECTTSCEEEESSCC
T ss_pred hhcCCceeEeCCCcccCCCCeEEEEEcCCCcEEEecCcc
Confidence 444444333344222333456789999999999998843
No 79
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=44.22 E-value=36 Score=18.90 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=21.0
Q ss_pred eecCCCCHHHHHHHHHHHHhccCcccceeEE
Q psy9980 53 YVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83 (124)
Q Consensus 53 ~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~~ 83 (124)
.+++.|+... .+..+.|.||+......++.
T Consensus 29 ~I~~~etv~~-~ke~V~eqTgIp~~~Q~LL~ 58 (94)
T 4efo_A 29 YIHSYNTATI-FHELVYKQTKIISSNQELIY 58 (94)
T ss_dssp EEETTCBHHH-HHHHHHHHHCCCGGGEEEEE
T ss_pred EeccchHHHH-HHHHHHHHhCCCHHHHHHHh
Confidence 4566677666 45558999999887665554
No 80
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=40.31 E-value=50 Score=18.68 Aligned_cols=54 Identities=7% Similarity=0.161 Sum_probs=33.5
Q ss_pred EEEEEEcCCCcEEEEEecCCCCCCe----------eccceee---cCCCCHHHHHHHHHHHHhccCcc
Q psy9980 23 AGAVVLNDKNQVLVVKEFYRKRPQW----------KLPGGYV---EMSEDIGEAAVREVFEETNIRTE 77 (124)
Q Consensus 23 ~~~~v~~~~~~iLl~~r~~~~~~~w----------~~PgG~~---~~gEs~~~aa~RE~~EE~Gl~~~ 77 (124)
+.-+-+.+.+++++-|+... +-.| ++-+|.+ ..|+++.+...+|+.+-+|..+.
T Consensus 38 VLti~f~~~~~~VINkQ~P~-~QIWlaSp~sG~hfd~~~~~Wi~~r~g~~L~~~L~~e~~~~~g~~v~ 104 (106)
T 1ew4_A 38 VLTITFENGSKIIINRQEPL-HQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGETVS 104 (106)
T ss_dssp EEEEECTTSCEEEEEEETTT-TEEEEECSSCEEEEEEETTEEEETTTCCBHHHHHHHHHHHHHTSCCC
T ss_pred EEEEEECCCCEEEEeCCchh-hhheEecCCCceeeeecCCEEEECCCCchHHHHHHHHHHHHhCCCcc
Confidence 34444445456777766432 2223 2223444 34789999999999999997654
No 81
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=36.67 E-value=14 Score=19.05 Aligned_cols=15 Identities=0% Similarity=0.244 Sum_probs=12.2
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
.+|++.||+|.++..
T Consensus 26 ~I~~I~e~tg~~I~i 40 (71)
T 1vig_A 26 NINRIKDQYKVSVRI 40 (71)
T ss_dssp HHHHHHHHTCCEEEC
T ss_pred cHHHHHHHHCCEEEE
Confidence 378899999988763
No 82
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=31.08 E-value=23 Score=18.84 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=13.3
Q ss_pred HHHHHHHHHhccCcccc
Q psy9980 63 AAVREVFEETNIRTEFH 79 (124)
Q Consensus 63 aa~RE~~EE~Gl~~~~~ 79 (124)
..+|++.|+||.++...
T Consensus 34 ~~Ik~I~~~tga~I~i~ 50 (85)
T 2opv_A 34 ETIKQLQERAGVKMILI 50 (85)
T ss_dssp HHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHCCEEEEc
Confidence 35789999999987643
No 83
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=29.20 E-value=21 Score=20.00 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=12.5
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
.+|++.||||+++..
T Consensus 38 ~Ir~I~eetg~~I~I 52 (104)
T 2ctk_A 38 GIRKMMDEFEVNIHV 52 (104)
T ss_dssp HHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHCCEEEe
Confidence 589999999998763
No 84
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=28.74 E-value=23 Score=19.35 Aligned_cols=15 Identities=7% Similarity=0.384 Sum_probs=12.2
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
.+|+++|+||.++..
T Consensus 36 ~Ik~I~~~tga~I~I 50 (94)
T 1x4m_A 36 TIKQLQERAGVKMVM 50 (94)
T ss_dssp HHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHCCeEEe
Confidence 478899999998764
No 85
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.74 E-value=21 Score=19.18 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=11.5
Q ss_pred HHHHHHHhccCccc
Q psy9980 65 VREVFEETNIRTEF 78 (124)
Q Consensus 65 ~RE~~EE~Gl~~~~ 78 (124)
+|+++|+||.++..
T Consensus 32 Ik~Iqe~Tga~I~I 45 (83)
T 2dgr_A 32 IKRIQQRTHTYIVT 45 (83)
T ss_dssp HHHHHHHTTCEEEC
T ss_pred HHHHHHHhCCeEEe
Confidence 67899999987763
No 86
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=28.60 E-value=23 Score=18.28 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=12.4
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
-++++.|+||.++..
T Consensus 26 ~Ik~I~~~tga~I~i 40 (73)
T 2axy_A 26 SVKKMREESGARINI 40 (73)
T ss_dssp HHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHCCEEEE
Confidence 578899999988764
No 87
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=27.19 E-value=76 Score=16.79 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=15.9
Q ss_pred CCCCeeccceeecCC-CCHHHHHHHHH
Q psy9980 43 KRPQWKLPGGYVEMS-EDIGEAAVREV 68 (124)
Q Consensus 43 ~~~~w~~PgG~~~~g-Es~~~aa~RE~ 68 (124)
|+..-.+|.|.-..+ +...++++--+
T Consensus 29 WP~~~~vP~GW~~v~~~~sr~~CL~yI 55 (74)
T 2khr_A 29 WPVFADIPAGWRVVHGEASRAACLDYV 55 (74)
T ss_dssp EETTSCCCSSEEEEECSCCHHHHHHHH
T ss_pred CcCcCCCCCCcccCCCCCCHHHHHHHH
Confidence 555667999987664 44455554434
No 88
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=26.79 E-value=14 Score=21.77 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=11.0
Q ss_pred ceeecCCCCHHHHHHHHHHHHhc
Q psy9980 51 GGYVEMSEDIGEAAVREVFEETN 73 (124)
Q Consensus 51 gG~~~~gEs~~~aa~RE~~EE~G 73 (124)
||-.-+|--+...+++|+.||+-
T Consensus 15 ggLasp~PVp~s~aLkELIeELv 37 (132)
T 3lb6_A 15 GGFASPGPVPPSTALRELIEELV 37 (132)
T ss_dssp ---------CCSHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHHH
Confidence 45555554344459999999986
No 89
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.11 E-value=33 Score=18.70 Aligned_cols=15 Identities=7% Similarity=0.186 Sum_probs=12.4
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
-+|++.||||.++..
T Consensus 38 ~Ik~I~~etg~~I~i 52 (94)
T 2cte_A 38 KLQDLELKTATKIQI 52 (94)
T ss_dssp HHHHHHHHTTCCCBC
T ss_pred hHHHHHHHHCCEEEe
Confidence 378899999998764
No 90
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=25.40 E-value=29 Score=18.31 Aligned_cols=15 Identities=7% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
-+|+++|++|.++..
T Consensus 28 ~Ik~I~~~tga~I~i 42 (82)
T 1zzk_A 28 RIKQIRHESGASIKI 42 (82)
T ss_dssp HHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHCCEEEE
Confidence 578899999988764
No 91
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=25.23 E-value=83 Score=16.69 Aligned_cols=28 Identities=7% Similarity=0.051 Sum_probs=21.1
Q ss_pred ecCCCCHHHHHHHHHHHHhccCcccceeE
Q psy9980 54 VEMSEDIGEAAVREVFEETNIRTEFHSVV 82 (124)
Q Consensus 54 ~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~ 82 (124)
++++++..+ .+..+.+.+|+.+...+++
T Consensus 24 v~~~~TV~~-lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 24 LSEDDTVLD-LKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp CCSSSBHHH-HHHHHHHHTCCCTTTCEEE
T ss_pred eCCCCCHHH-HHHHHHHHHCcCHHHeEEE
Confidence 455566654 7788999999988777776
No 92
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=24.93 E-value=27 Score=18.78 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=12.9
Q ss_pred HHHHHHHHhccCcccc
Q psy9980 64 AVREVFEETNIRTEFH 79 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~~ 79 (124)
-+|+++|++|.++...
T Consensus 35 ~Ik~I~~~tga~I~I~ 50 (89)
T 1j5k_A 35 RIKQIRHESGASIKID 50 (89)
T ss_dssp HHHHHHHHTCCEEEEC
T ss_pred hHHHHHHHhCCeEEec
Confidence 5788999999987643
No 93
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=23.82 E-value=32 Score=18.09 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=12.9
Q ss_pred HHHHHHHHhccCcccc
Q psy9980 64 AVREVFEETNIRTEFH 79 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~~ 79 (124)
-++++.|++|.++...
T Consensus 27 ~Ik~I~~~sga~I~i~ 42 (82)
T 1wvn_A 27 NINEIRQMSGAQIKIA 42 (82)
T ss_dssp HHHHHHHHHCCEEEEC
T ss_pred hHHHHHHHhCCEEEEe
Confidence 5788999999987643
No 94
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=23.64 E-value=37 Score=19.08 Aligned_cols=17 Identities=12% Similarity=0.548 Sum_probs=13.2
Q ss_pred HHHHHHHHHhccCcccc
Q psy9980 63 AAVREVFEETNIRTEFH 79 (124)
Q Consensus 63 aa~RE~~EE~Gl~~~~~ 79 (124)
..++++.|+||.++...
T Consensus 31 ~~Ik~I~~~TGakI~I~ 47 (106)
T 2hh3_A 31 EMIKKIQNDAGVRIQFK 47 (106)
T ss_dssp HHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHCcEEEEe
Confidence 35788999999987643
No 95
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=23.46 E-value=34 Score=17.69 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHHHhccCcccc
Q psy9980 64 AVREVFEETNIRTEFH 79 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~~ 79 (124)
-++++.|++|.++...
T Consensus 26 ~Ik~I~~~tga~I~i~ 41 (76)
T 2p2r_A 26 KINEIRQMSGAQIKIA 41 (76)
T ss_dssp HHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHCCEEEEc
Confidence 4788999999887644
No 96
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=23.30 E-value=33 Score=19.09 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=12.4
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
.+|++.|++|.++..
T Consensus 36 ~Ik~I~~~tga~I~I 50 (104)
T 1we8_A 36 TIRSICKASGAKITC 50 (104)
T ss_dssp HHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHCCEEEE
Confidence 578899999987764
No 97
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=23.10 E-value=30 Score=19.45 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.2
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
-+|++.|+||.++..
T Consensus 28 ~Ik~I~~~TGa~I~I 42 (107)
T 2hh2_A 28 NVKAINQQTGAFVEI 42 (107)
T ss_dssp HHHHHHHHSSSEEEE
T ss_pred HHHHHHHHhCCEEEE
Confidence 378899999998764
No 98
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.86 E-value=33 Score=18.86 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=12.3
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
.+|++.|+||.++..
T Consensus 38 ~Ir~I~e~tg~~I~i 52 (95)
T 2ctm_A 38 AIRKIMDEFKVDIRF 52 (95)
T ss_dssp HHHHHHHHHTCEEEC
T ss_pred hHHHHHHHHCCeEEe
Confidence 478999999988763
No 99
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.36 E-value=42 Score=16.41 Aligned_cols=11 Identities=55% Similarity=0.531 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q psy9980 61 GEAAVREVFEE 71 (124)
Q Consensus 61 ~~aa~RE~~EE 71 (124)
--.|+||+.|-
T Consensus 41 F~~aVREVYEh 51 (53)
T 1zl8_A 41 FFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34678888874
No 100
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.35 E-value=37 Score=18.70 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.5
Q ss_pred HHHHHHHHh-ccCcc
Q psy9980 64 AVREVFEET-NIRTE 77 (124)
Q Consensus 64 a~RE~~EE~-Gl~~~ 77 (124)
.+|++.||+ |.++.
T Consensus 38 ~Ir~I~eetggv~I~ 52 (95)
T 2ctj_A 38 LIRSIMEECGGVHIH 52 (95)
T ss_dssp HHHHHHHHHTSCEEE
T ss_pred hHHHHHHHcCCCEEE
Confidence 579999999 87764
No 101
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=22.34 E-value=1.3e+02 Score=17.69 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=20.3
Q ss_pred cCCCCHHHHHHHHHHHHhccCccc
Q psy9980 55 EMSEDIGEAAVREVFEETNIRTEF 78 (124)
Q Consensus 55 ~~gEs~~~aa~RE~~EE~Gl~~~~ 78 (124)
..|+++.+...+|+.+-+|..+..
T Consensus 96 rdg~~L~~~L~~el~~~~g~~v~~ 119 (129)
T 3t3l_A 96 HDGVSLHELLAAELTKALKTKLDL 119 (129)
T ss_dssp TTCCBHHHHHHHHHHHHHTSCCCC
T ss_pred CCCchHHHHHHHHHHHHhCCceee
Confidence 347899999999999999987764
No 102
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=22.06 E-value=44 Score=16.91 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=16.2
Q ss_pred eccceeecCCCCHHHHHHHHHHHHhccC
Q psy9980 48 KLPGGYVEMSEDIGEAAVREVFEETNIR 75 (124)
Q Consensus 48 ~~PgG~~~~gEs~~~aa~RE~~EE~Gl~ 75 (124)
+||| .-.|+|.++|. +.++|=+.+.
T Consensus 23 dlpg--~t~G~T~eEa~-~~~~eAi~~~ 47 (67)
T 2yzt_A 23 ELHA--HTQAQSFEELL-RRLQEAIAVS 47 (67)
T ss_dssp GGTE--EEEESSHHHHH-HHHHHHHHHH
T ss_pred CCCC--ceeeCCHHHHH-HHHHHHHHHH
Confidence 4665 77799998855 4466655543
No 103
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=22.06 E-value=37 Score=17.42 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=12.2
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
-++++.+++|.++..
T Consensus 24 ~Ik~I~~~tga~I~i 38 (76)
T 1dtj_A 24 TLVEYQELTGARIQI 38 (76)
T ss_dssp HHHHHHHHHCCEEEE
T ss_pred HHHHHHHHhCCEEEE
Confidence 478899999987753
No 104
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.61 E-value=35 Score=19.79 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=12.8
Q ss_pred HHHHHHHHHhccCccc
Q psy9980 63 AAVREVFEETNIRTEF 78 (124)
Q Consensus 63 aa~RE~~EE~Gl~~~~ 78 (124)
.-+|.+.+|||+++..
T Consensus 39 ~tiK~I~~eTG~kI~I 54 (119)
T 2yqr_A 39 SYLQHIQIETGAKVFL 54 (119)
T ss_dssp HHHHHHHHHHCCEEEE
T ss_pred hHHHHHHHHHCCEEEE
Confidence 3578899999998764
No 105
>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A
Probab=21.50 E-value=91 Score=17.53 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=17.8
Q ss_pred CCCCHHHHHHHHHHHHhccCcccce
Q psy9980 56 MSEDIGEAAVREVFEETNIRTEFHS 80 (124)
Q Consensus 56 ~gEs~~~aa~RE~~EE~Gl~~~~~~ 80 (124)
..-|+++||.| +.+|+|+...-..
T Consensus 38 ~~~s~eeCA~k-C~~~~~~~F~CRA 61 (101)
T 3hms_A 38 KVNTADQCANR-CTRNKGLPFTCKA 61 (101)
T ss_dssp ECSCHHHHHHH-HHHCTTCSSCCCE
T ss_pred ccCCHHHHHHH-HHhccCCCcceee
Confidence 34589999988 9999987655433
No 106
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.33 E-value=1.2e+02 Score=16.83 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=22.0
Q ss_pred eecCCCCHHHHHHHHHHHHhccCcccceeE
Q psy9980 53 YVEMSEDIGEAAVREVFEETNIRTEFHSVV 82 (124)
Q Consensus 53 ~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~ 82 (124)
.++++.+..+ .+..+.+.+|+.+...+++
T Consensus 24 ~v~~~~TV~~-LK~~I~~~tgIpp~~QkLi 52 (100)
T 2dzm_A 24 VLEDTCTVGE-IKQILENELQIPVSKMLLK 52 (100)
T ss_dssp EEETTSBHHH-HHHHHHHHHCCCTTTCCEE
T ss_pred EECCCCcHHH-HHHHHHHHHCCChhHeEEE
Confidence 4677777744 7888999999988766664
No 107
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=21.23 E-value=71 Score=14.75 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhcc
Q psy9980 61 GEAAVREVFEETNI 74 (124)
Q Consensus 61 ~~aa~RE~~EE~Gl 74 (124)
.+..+|.++||+-.
T Consensus 6 re~~i~~LreeLR~ 19 (43)
T 2l2l_A 6 RERMIKQLKEELRL 19 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45678888888764
No 108
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.67 E-value=41 Score=18.49 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=12.2
Q ss_pred HHHHHHHHhccCccc
Q psy9980 64 AVREVFEETNIRTEF 78 (124)
Q Consensus 64 a~RE~~EE~Gl~~~~ 78 (124)
.++++.|+||.++..
T Consensus 38 ~Ik~I~~etg~~I~i 52 (97)
T 2ctl_A 38 VITQIRLEHDVNIQF 52 (97)
T ss_dssp HHHHHHHHHTCEEEC
T ss_pred hHHHHHHHHCCEEEe
Confidence 478899999987763
No 109
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=20.62 E-value=56 Score=17.32 Aligned_cols=24 Identities=8% Similarity=0.190 Sum_probs=14.7
Q ss_pred CCCCeeccceeecCC-CCHHHHHHH
Q psy9980 43 KRPQWKLPGGYVEMS-EDIGEAAVR 66 (124)
Q Consensus 43 ~~~~w~~PgG~~~~g-Es~~~aa~R 66 (124)
|+....+|.|.-..+ +...++++-
T Consensus 27 WP~~~~vP~GW~~v~~~~sr~~CL~ 51 (74)
T 2pst_X 27 WPEYKEIPQGWRAAGKSGLKKDCLA 51 (74)
T ss_dssp EETTSCCCTTEEEEEEEECHHHHHH
T ss_pred CcCCCCCCCCcccCCCCCCHHHHHH
Confidence 666668898887664 333444444
No 110
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.21 E-value=1.1e+02 Score=16.51 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=21.2
Q ss_pred eecCCCCHHHHHHHHHHHHhccCcccceeE
Q psy9980 53 YVEMSEDIGEAAVREVFEETNIRTEFHSVV 82 (124)
Q Consensus 53 ~~~~gEs~~~aa~RE~~EE~Gl~~~~~~~~ 82 (124)
.+++..+..+ .+..+.+.+|+.+...+++
T Consensus 32 ~v~~~~TV~~-LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 32 KVPLDSTGSE-LKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EECTTSBHHH-HHHHHHHHHCSCSTTCCCB
T ss_pred EECCCCcHHH-HHHHHHHHHCcCHHHeEEE
Confidence 4555666654 7788999999987766665
Done!