RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9980
(124 letters)
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 130 bits (327), Expect = 2e-39
Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 3 KWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIG 61
+ +E+ +G V ++ + ++V + K WK PGG E EDIG
Sbjct: 9 SGVDLGTENLYFQSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIG 68
Query: 62 EAAVREVFEETNIRTEFHSVVAFRHTHK--AAFGCSDIYFIVRLKPLTQEITKDDREITE 119
+ AVREVFEET I++EF SV++ R H AFG SD+Y I RLKP + I E
Sbjct: 69 DTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLR 128
Query: 120 SKWMD 124
+WMD
Sbjct: 129 CEWMD 133
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 97.1 bits (242), Expect = 4e-27
Identities = 23/100 (23%), Positives = 40/100 (40%)
Query: 25 AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84
A V++ + + LVV+E + W P G++E E + EAA RE++EET I + +
Sbjct: 9 ACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRM 68
Query: 85 RHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ D +I +W+
Sbjct: 69 HQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVS 108
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 89.1 bits (221), Expect = 4e-24
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 25 AVVLNDKNQVLVVKEFYR-KRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
A V+ ++ L+V+E R + P G++E E I +A REV EET +
Sbjct: 12 AAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTG 71
Query: 84 FRHTHKAAFGCSDIYFIVRLKPLTQEIT-KDDREITESKWMD 124
H A+ G + + F + ++ + K D I + W
Sbjct: 72 IYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFS 113
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 89.0 bits (221), Expect = 6e-24
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 16 YAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNI 74
+ AV L+++++VL+++E R+ W LP G +E E I EA REV EE +
Sbjct: 16 RKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL 75
Query: 75 RTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKD---DREITESKWMD 124
E ++++ S + F+ +P + D E ++ W
Sbjct: 76 HCEPETLLSVEERGP-----SWVRFVFLARPTGGILKTSKEADAESLQAAWYP 123
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 83.3 bits (206), Expect = 9e-22
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 14 PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-----QWKLPGGYVEMSEDIGEAAVREV 68
+ + AG V+LN++ +L+V+E W +P G VE E+ +AAVRE
Sbjct: 7 THVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREA 66
Query: 69 FEETNIRTEFHSVVA-FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
EET +R + + ++ +P EI E+ ++
Sbjct: 67 CEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVS 123
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 84.3 bits (208), Expect = 4e-21
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 1 MTKWLPDDSE--SRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMS 57
+ KW E Y + GA++L+ Q ++VK + W P G ++
Sbjct: 80 LWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKAS-SGWGFPKGKIDKD 138
Query: 58 EDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREI 117
E + A+REV+EET +Y I + T+ ++ +EI
Sbjct: 139 ESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEI 198
Query: 118 TESKWMD 124
++ +W +
Sbjct: 199 SKIEWHN 205
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 80.8 bits (200), Expect = 5e-21
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
+GAG VV N K +VL+++ + W P G+ E E + EAAVREV+EET +R E
Sbjct: 3 LGAGGVVFNAKREVLLLR---DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59
Query: 81 VVA-FRHTHKAAFGCSDIYFIVR--LKPLTQEITKDDREITESKWMD 124
+ R+ + +F++R P +E +T + W
Sbjct: 60 PLYPTRYVNPKGVEREVHWFLMRGEGAPRLEE------GMTGAGWFS 100
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 76.4 bits (188), Expect = 5e-19
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 9/120 (7%)
Query: 11 SRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFE 70
++ + AV+ N++ ++L W LP G +E+ E EA VREV+E
Sbjct: 12 EQLGHELIFXPSVAAVIKNEQGEILFQY---PGGEYWSLPAGAIELGETPEEAVVREVWE 68
Query: 71 ETNIRTE------FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
ET ++ + +R+T+ I + + + E+ D E + ++
Sbjct: 69 ETGLKVQVKKQKGVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSIDGESLKLQYFS 128
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 72.5 bits (178), Expect = 1e-17
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 23 AGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
GA + N + +++L+V+ + W P G + E+ + +REV EE +
Sbjct: 7 RGAAIFNENLSKILLVQG--TESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYID 64
Query: 82 VAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
I+ I + + + EI + +W D
Sbjct: 65 DNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFD 107
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 71.5 bits (175), Expect = 4e-17
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 4 WLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRK-RPQWKLPGGYVEMSEDIGE 62
+L + + + + ++ +V N + + L+ K R + W +PGG V+ E +
Sbjct: 3 FLRQEDFATVV-RSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEA 61
Query: 63 AAVREVFEETNIRTE---FHSVVAFRHTHKAAFGCSD-----IYFIVRLKPLTQEITKDD 114
A R E +R ++H + F +D + R + +E+ D
Sbjct: 62 AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPD 121
Query: 115 REITESKWMD 124
+ + +W+
Sbjct: 122 EQHDDYRWLT 131
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 70.3 bits (173), Expect = 6e-17
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 21/113 (18%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
AG V+ D +VL++K W P G +E E E AVREV+EET ++ E
Sbjct: 5 FSAGGVLFKD-GEVLLIK---TPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILD 60
Query: 81 VVA---------FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ K Y++++ + + E+ ++K+
Sbjct: 61 YIGEIHYWYTLKGERIFKTVK-----YYLMK---YKEGEPRPSWEVKDAKFFP 105
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 70.9 bits (174), Expect = 7e-17
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 11 SRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVR 66
+ + +G GA ++ D ++L++K RKR W LPGG V+ E + A R
Sbjct: 20 GSMQHTEQPRVGCGAAIVRD-GRILLIK---RKRAPEAGCWGLPGGKVDWLEPVERAVCR 75
Query: 67 EVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEIT-KDDREITESKW 122
E+ EE I E +++ AA G + + + E + W
Sbjct: 76 EIEEELGIALERATLLCVVDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGW 132
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 69.7 bits (171), Expect = 2e-16
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQ---WKLPGGYVEMSEDIGEAAVREVFEETNIRT 76
+I A++ N+K + L+++ R W LPGG V E + E REV+EET I
Sbjct: 8 IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITM 67
Query: 77 EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ + I F + ++ E E W+
Sbjct: 68 VPGDIAGQVNFELTEKKVIAIVFDGG--YVVADVKL-SYEHIEYSWVS 112
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 69.8 bits (171), Expect = 2e-16
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
+ +++ D +VL+VK+ R W LPGG VE E + EA +RE+ EET + +
Sbjct: 23 QVRVTGILIED-EKVLLVKQKVANR-DWSLPGGRVENGETLEEAMIREMREETGLEVKIK 80
Query: 80 SVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
++ A+ I F++ + EIT E + D
Sbjct: 81 KLLYVCDKPDASPSLLHITFLLER--IEGEITLPSNEFDHNPIHD 123
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 70.1 bits (172), Expect = 3e-16
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 15 NYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
Y + AVV + ++L VKE + +W LPGG+ ++ E A +EVFEET
Sbjct: 63 GYQTPKVDIRAVVFQN-EKLLFVKE--KSDGKWALPGGWADVGYTPTEVAAKEVFEETGY 119
Query: 75 RTEFHSVVAF--RHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKW 122
+ ++A + H+ + + +Y I + K E E ++
Sbjct: 120 EVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEF 169
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 68.6 bits (168), Expect = 5e-16
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
V N+ + L+++ W P G+VE ED E A+R EE I ++
Sbjct: 19 CLIPKVDNNAIEFLLLQASDGIH-HWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI 77
Query: 82 VA-FRHTHKAAFGCSD---IYFIVRLKPLTQEITKDDREITESKWMD 124
+ F+ IY++ +K EI E +W+
Sbjct: 78 IEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLG 123
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 67.4 bits (165), Expect = 1e-15
Identities = 20/108 (18%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE--- 77
+ A A+++ + +++LV + + ++ GG ++++E +A VREV EE ++ +
Sbjct: 20 VRATALIVQN-HKLLVT----KDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQ 74
Query: 78 -FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
V ++ + +++V L ++D + +W+D
Sbjct: 75 LAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWID 122
>3f13_A Putative nudix hydrolase family member; structural genomics,
PSI-2, protein structure initiative; 1.70A
{Chromobacterium violaceum}
Length = 163
Score = 66.4 bits (162), Expect = 5e-15
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 5 LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAA 64
L D R+P+ + ++ + VLV + ++ LPGG E +A
Sbjct: 3 LEDRKNERLPS---DLARRATAIIEMPDGVLVTA---SRGGRYNLPGGKANRGELRSQAL 56
Query: 65 VREVFEETNIR---TEFHSVVAFRHTHKAAFGC 94
+RE+ EET +R + + C
Sbjct: 57 IREIREETGLRINSMLYLFDHITPFNAHKVYLC 89
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 65.9 bits (161), Expect = 9e-15
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 19 TMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
++ ++ D +QVL+++ + R W PGG +E E I E RE +EET I +
Sbjct: 2 SLQRVTNCIVVDHDQVLLLQ---KPRRGWWVAPGGKMEAGESILETVKREYWEETGITVK 58
Query: 78 ---FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ + + + F + E+ K E + +W
Sbjct: 59 NPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPE-GKLEWKK 107
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 63.3 bits (154), Expect = 4e-14
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
T A +V +N +V+ + + LPGG +E +E EA REV EE I E
Sbjct: 16 QTRYAAYIIVSKPENNTMVLVQ--APNGAYFLPGGEIEGTETKEEAIHREVLEELGISVE 73
Query: 78 -------FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
H A + +++ E + + W+
Sbjct: 74 IGCYLGEADEYFYSNHRQTAYYNPG-YFYVANTWRQLSEPLERTNTL---HWVA 123
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 63.7 bits (155), Expect = 1e-13
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 16 YAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR 75
Y + A + + +L W LPGG+ ++ + + + V+EV EE +
Sbjct: 66 YQTPKLDTRAAIFQEDKILL----VQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLD 121
Query: 76 TEFHSVVA-----FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKW 122
E VVA + K+A + ++ + RL L E + E S +
Sbjct: 122 VEAQRVVAILDKHKNNPAKSAHRVTKVFILCRL--LGGEFQPNS-ETVASGF 170
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein,
structural genomics, NPPSFA, national on protein
structural and functional analyses; 1.80A {Aquifex
aeolicus}
Length = 139
Score = 61.9 bits (151), Expect = 1e-13
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 15 NYAHTMIGAGAVVL----NDKNQVLVVKEFYRKRP--QWKLPGGYVEMSEDIGEAAVREV 68
N ++ ++ + +++++ RK P LPGG+VE+ E + EAA RE+
Sbjct: 4 NVKTPLLATDVIIRLWDGENFKGIVLIE---RKYPPVGLALPGGFVEVGERVEEAAAREM 60
Query: 69 FEETNIRTEFHSVVA 83
EET + H ++
Sbjct: 61 REETGLEVRLHKLMG 75
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 62.2 bits (151), Expect = 2e-13
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE-- 77
MI V++ + +VL+VK ++ + PGG+VE +E EA RE EET I E
Sbjct: 1 MIVTSGVLVEN-GKVLLVKH--KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57
Query: 78 --FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEI------TKDDREITESKWMD 124
+ ++ + + + + ++ +W+D
Sbjct: 58 GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWID 112
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 61.7 bits (150), Expect = 4e-13
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 25 AVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSEDIGEAAVREVFEETNIRTE---FHS 80
+ +N+VL+ K W LP G++E +E + + A RE EE N R E ++
Sbjct: 44 GCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYA 103
Query: 81 VVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
V + H +Y + R K L + E E +
Sbjct: 104 VYSLPHIS-------QVYMLFRAKLLDLDFFPGI-ESLEVRLFG 139
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 58.9 bits (143), Expect = 3e-12
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWK----LPGGYVEMSEDIGEAAVREVFEETN 73
++ V + +VLV + WK PGG+VE+ E AA+REVFEET
Sbjct: 9 VELVTMVMVTDPETQRVLVED---KVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETG 65
Query: 74 IRTE 77
+R
Sbjct: 66 LRLS 69
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 59.7 bits (144), Expect = 5e-12
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 12 RIPNYAHTMIGAGAVVL-----NDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGE 62
+P Y + V+L D+ +VL+++ RK W LPGG+V +E +
Sbjct: 31 ELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQ---RKGHPFRNSWALPGGFVNRNESTED 87
Query: 63 AAVREVFEETNIRTEFHSVVAFR 85
+ +RE EET + ++
Sbjct: 88 SVLRETKEETGVVISQENIEQLH 110
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 57.6 bits (140), Expect = 5e-12
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Query: 23 AGAVVLNDKN---QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
AG V+ + L+++ Y W P G+V+ ED +AA+RE EE NI E
Sbjct: 6 AGLVIYRKLAGKIEFLLLQASYPPH-HWTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 64
Query: 80 SVVAFRHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
++ H Y++ +L ++ E KW +
Sbjct: 65 TIHEDCHETLFYEAKGKPKSVKYWLAKLNN-PDDVQ-LSHEHQNWKWCE 111
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 56.9 bits (137), Expect = 1e-11
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 13/109 (11%)
Query: 25 AVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIR-------- 75
+ Q V+ R W+ G E E I E A RE EE N+
Sbjct: 13 FIKTEANYQFGVLH---RTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSL 69
Query: 76 TEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
S+ F + + + F + L + ++T E +E +W+
Sbjct: 70 DSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVT-LSLEHSELRWVS 117
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 57.7 bits (139), Expect = 1e-11
Identities = 19/138 (13%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 1 MTKWLPDDSESRIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
+ L D + + + + A +N ++N+ L++ W GG+ + +D
Sbjct: 26 FLRCLNDFHDILTRDNTIAHLTSSAFAVNKERNKFLMIHH--NIYNSWAWTGGHSDNEKD 83
Query: 60 IGEAAVREVFEETNIRT-----------EFHSVVAF--RHTHKAAFGCSDIYFIVRLKPL 106
+ A++E+ EET ++ + +V R + ++ ++ +++
Sbjct: 84 QLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIEC-SE 142
Query: 107 TQEITKDDREITESKWMD 124
+ + + E + W+
Sbjct: 143 DETLMLKEDENSGVMWIP 160
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 57.7 bits (139), Expect = 1e-11
Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 10 ESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREV 68
++R + A + +++ V+ + P +W +PGG +E E+ AAVREV
Sbjct: 30 QTRTYDGDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREV 89
Query: 69 FEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
EE ++ +V + +++ + + ++ + +W
Sbjct: 90 CEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFK 143
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 57.3 bits (138), Expect = 5e-11
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 2 TKWLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMS 57
++ + + ++ + +L+V+ RK W LPGG++E
Sbjct: 189 NNYVIEYKRLWLKAPFKPNFVTVDALVIVNDHILMVQ---RKAHPGKDLWALPGGFLECD 245
Query: 58 EDIGEAAVREVFEETNIRTE 77
E I +A +RE+FEETNI
Sbjct: 246 ETIAQAIIRELFEETNINLT 265
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 54.5 bits (131), Expect = 2e-10
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 13/114 (11%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRP---QWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
++ + L+ K + QW L GG VE E I EA RE+ EE +
Sbjct: 28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLI 87
Query: 78 FHSVVAFRHTHKAAFGCSD---------IYFIVRLKPLTQEITKDDREITESKW 122
+ + IY I ++I +D E + W
Sbjct: 88 LSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICIND-EFQDYAW 140
>2b06_A MUTT/nudix family protein; structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP:
d.113.1.1
Length = 155
Score = 53.6 bits (129), Expect = 3e-10
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 20 MIGAGAVVLNDKNQVLVVK--EFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
+ + + +V++ + + PGG+VE E E+ +RE++EET + +
Sbjct: 9 LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQ 68
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 53.5 bits (128), Expect = 3e-10
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV 82
++ ++VL+ +K + GG++E++E EA +RE EE + ++ +
Sbjct: 9 VSVFIVCK-DKVLLHLH--KKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI 65
Query: 83 AFRHTHKAAFGCSDIY-------------------FIVRLKPLTQEITKDDREITESKWM 123
+ F+ + E + + E KW
Sbjct: 66 DINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWY 125
Query: 124 D 124
Sbjct: 126 S 126
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 53.6 bits (129), Expect = 4e-10
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 11 SRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVR 66
R + + + +VL +VL+ +KR +W GG V+ E I + A R
Sbjct: 16 PRGSHMGASRLYTLVLVLQP-QRVLLGM---KKRGFGAGRWNGFGGKVQEGETIEDGARR 71
Query: 67 EVFEETNIRTE 77
E+ EE+ + +
Sbjct: 72 ELQEESGLTVD 82
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 54.6 bits (131), Expect = 4e-10
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 14 PNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVREVF 69
V+ VL+V+ R+ LPGG+++ +E + E +RE+
Sbjct: 196 TAPYAPTFITTDAVVVQAGHVLMVR---RQAKPGLGLIALPGGFIKQNETLVEGMLRELK 252
Query: 70 EETNIRTEFHSVVAF 84
EET ++ +
Sbjct: 253 EETRLKVPLPVLRGS 267
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 51.3 bits (123), Expect = 3e-09
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 33 QVLVVK--------EFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78
+L++K + + +W +PGG+V+ +E +AA RE+ EET++
Sbjct: 47 HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIP 100
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 51.4 bits (122), Expect = 6e-09
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 8 DSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVRE 67
+ S I N A D +V +V K W P G +E +E AAVRE
Sbjct: 14 KAGSDIANDPAIASSKSAQEQLDSIEVCIVH--RPKYDDWSWPKGKLEQNETHRHAAVRE 71
Query: 68 VFEETNIRTEFHSV 81
+ EET +
Sbjct: 72 IGEETGSPVKLGPY 85
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 48.1 bits (115), Expect = 3e-08
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 6 PDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDI 60
+P + +I +L+ N+VL+ + R + W+ PGG VE E
Sbjct: 15 QTQGPGSMPIKSSLLIVVACALLDQDNRVLLTQ---RPEGKSLAGLWEFPGGKVEQGETP 71
Query: 61 GEAAVREVFEETNIRT 76
+ +RE+ EE +
Sbjct: 72 EASLIRELEEELGVHV 87
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair;
NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A*
1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A*
3a6v_A*
Length = 129
Score = 47.9 bits (115), Expect = 3e-08
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
A ++ N+ N++ + + R + PGG +EM E +A VRE+ EE I +
Sbjct: 7 AVGIIRNENNEIFITR---RAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQ 63
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure
INIT NEW YORK SGX research center for structural
genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum
rubrum}
Length = 144
Score = 46.5 bits (111), Expect = 9e-08
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 19 TMIGAGAVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETN 73
++ A +++ +VL+ + R + W+ PGG +E E A VRE+ EE
Sbjct: 7 ILLVTAAALIDPDGRVLLAQ---RPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELG 63
Query: 74 IRTE 77
+ T
Sbjct: 64 VDTR 67
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural
genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron}
SCOP: a.4.5.68 d.113.1.6
Length = 226
Score = 47.7 bits (113), Expect = 1e-07
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 14 PNYAHTMIGAGAVVL---NDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVR 66
+ +G ++ + +L++K R +W L GG+V+ E + +AA R
Sbjct: 7 SSNPTFYLGIDCIIFGFNEGEISLLLLK---RNFEPAMGEWSLMGGFVQKDESVDDAAKR 63
Query: 67 EVFEETNIRTEF 78
+ E T + +
Sbjct: 64 VLAELTGLENVY 75
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 46.1 bits (110), Expect = 1e-07
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQ-------WKLPGGYVEMSEDIGEAAVREVFEET 72
MI A ++ ++L+ + RP W+ GG VE E +A VRE+ EE
Sbjct: 8 MIEVVAAIIERDGKILLAQ-----RPAQSDQAGLWEFAGGKVEPDESQRQALVRELREEL 62
Query: 73 NIRTE 77
I
Sbjct: 63 GIEAT 67
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 45.3 bits (108), Expect = 3e-07
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQ-------WKLPGGYVEMSEDIGEAAVREVFEETNIR 75
AV+ + L V+ R + + ++ PGG VE E + EA RE+ EE +
Sbjct: 9 VAAVIRLG-EKYLCVQ---RGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYV 64
Query: 76 TEFHSVVAFRH 86
E + H
Sbjct: 65 IEVGEKLLTVH 75
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese,
zinc; NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 45.6 bits (109), Expect = 3e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 22 GAGAVVLNDKNQVLVVKEFYRKRPQ-WKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
G V+ N + QV+ + R W+ P G + E +A RE+FEE + +
Sbjct: 10 NVGIVICNRQGQVMWAR---RFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRK 63
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 44.4 bits (106), Expect = 5e-07
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 22 GAGAVV-LNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEETNIR-- 75
A ++ + + + +++++ +R ++ G VE ED+G AA RE+ EE
Sbjct: 6 RAVFILPVTAQGEAVLIRQ-FRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAAS 64
Query: 76 -----TEFHSVVAF 84
F+ +
Sbjct: 65 EWVPLPGFYPQPSI 78
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB:
1jkn_A*
Length = 165
Score = 44.9 bits (107), Expect = 6e-07
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 22 GAGAVVLNDKNQVLVVKEFYRKRPQ--WKLPGGYVEMSEDIGEAAVREVFEETNIR 75
G ++N+ ++ R W++P G ++ ED AA+RE+ EET +
Sbjct: 16 NVGICLMNNDKKIFAAS---RLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics initiative,
RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Length = 170
Score = 44.9 bits (107), Expect = 6e-07
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 22 GAGAVVLNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78
A AV+ + ++L V++ R ++P G +E ED EAA RE+ E+T + +
Sbjct: 35 PAVAVIALREGRMLFVRQ-MRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDL 93
Query: 79 HSVVAFRHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
+ ++ + G +D ++ LK + D+ E E WM
Sbjct: 94 TYLFSYF----VSPGFTDEKTHVFLAENLKEVEAH--PDEDEAIEVVWMR 137
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 44.6 bits (106), Expect = 6e-07
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 25 AVVLNDKNQVLVVKEFYRKRPQ-----WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
A L ++LV + R W+ PGG +E E EA RE+ EE I E
Sbjct: 26 AGFLRKDGKILVGQ---RPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVG 82
Query: 80 SVVAF 84
+
Sbjct: 83 ELKLA 87
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain,
WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 44.3 bits (104), Expect = 2e-06
Identities = 15/82 (18%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 14 PNYAHTMIGAGAVVL---NDKNQVLVVKEFYRKRP----QWKLPGGYVEMS--EDIGEAA 64
+ ++ AV+ + + +VL+V+ R W LPGG+++ + E + +
Sbjct: 16 KAFKAQLLTVDAVLFTYHDQQLKVLLVQ---RSNHPFLGLWGLPGGFIDETCDESLEQTV 72
Query: 65 VREVFEETNIRTEFHSVVAFRH 86
+R++ E+T + + +
Sbjct: 73 LRKLAEKTAVVPPYIEQLCTVG 94
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 43.8 bits (104), Expect = 2e-06
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 5 LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIG 61
+ T A +V + +++++E Y + G ++ E +
Sbjct: 33 FSNGVRRVYERMRPTNREAVMIVPIVDDHLILIRE-YAVGTESYELGFSKGLIDPGESVY 91
Query: 62 EAAVREVFEET 72
EAA RE+ EE
Sbjct: 92 EAANRELKEEV 102
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A
1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 43.4 bits (103), Expect = 2e-06
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 14/112 (12%)
Query: 22 GAGAVVLNDKNQVLVVKEFYRK---RPQWKLPGGYVEMS-EDIGEAAVREVFEETNIRTE 77
V ++D + +V + YR R W+LP G ++++ E A RE+ EE ++
Sbjct: 45 AVAIVAMDDNGNIPMVYQ-YRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQAS 103
Query: 78 -FHSVVAFRHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
+ +V A G SD +Y L+ + + + W
Sbjct: 104 TWQVLVDLD----TAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYP 151
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneo triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 42.6 bits (100), Expect = 3e-06
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 23/116 (19%)
Query: 26 VVLNDKNQVLVVKEFYRKRPQ--WKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV- 82
+ D +VL+++ R+ W+ G VE E +AA+REV EE I +
Sbjct: 16 IYAQDTKRVLMLQ---RRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTL 72
Query: 83 -------------AFRHTH-KAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
RH + ++ +F + L P ++I E KW+D
Sbjct: 73 IDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLAL-PHERQIVF--TEHLAYKWLD 125
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 42.7 bits (101), Expect = 3e-06
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 15/108 (13%)
Query: 26 VVLNDKNQVLVVKEFYRKRPQWKL--PG-------GYVEMSEDIGEAAVREVFEETNIRT 76
+ N + Q+ + +R K P G V+ E EA RE EE N+
Sbjct: 40 FLRNSQGQLWI-----PRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI 94
Query: 77 EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ S S + L+ + +I+ +W+
Sbjct: 95 DALSWRPLASFSPFQTTLSSFMCVYELR-SDATPIFNPNDISGGEWLT 141
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 42.2 bits (100), Expect = 6e-06
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 22 GAGAVV-LNDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEET 72
A V+ + ++ L+V++ YR + ++P G V+ E AA RE+ EE
Sbjct: 42 AASFVLPVTERGTALLVRQ-YRHPTGKFLLEVPAGKVDEGETPEAAARRELREEV 95
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 41.4 bits (96), Expect = 2e-05
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 14 PNYAHTMI-------GAGAVVLNDKN-----QVLVVKEFYRKRP-QWKLPGGYVEMSEDI 60
PN+A I +G +++ + Q + +K RK +W +PGG V+ E I
Sbjct: 109 PNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIK---RKDCGEWAIPGGMVDPGEKI 165
Query: 61 GEAAVREVFEETNIRTE 77
RE EE +
Sbjct: 166 SATLKREFGEEALNSLQ 182
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 40.9 bits (96), Expect = 3e-05
Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 26 VVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRT---EFHSVV 82
V + + +L+ + + + G+VE+ E + +A REV EE+ I+ + +
Sbjct: 145 VAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQ 204
Query: 83 AFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ Y + +I D +E+ E+ W
Sbjct: 205 PWPFPQSLMTAFMAEY-------DSGDIVIDPKELLEANWYR 239
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl,
isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2
PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A*
1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A
2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Length = 190
Score = 39.0 bits (91), Expect = 1e-04
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 25/114 (21%)
Query: 27 VLNDKNQVLVVKEFYRKRPQWKL--PG-------GYVEMSEDIGEAAVREVFEETNIRTE 77
+ N K Q+LV +R K PG G+ ++ E +A +R E +
Sbjct: 39 LFNAKGQLLV-----TRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEIT 93
Query: 78 FHSVVAFRHTHKAAFGC-------SDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ ++A ++ L +D E+ + +W D
Sbjct: 94 PPESIYPDFRYRATDPSGIVENEVCPVFAARTTSAL----QINDDEVMDYQWCD 143
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 38.8 bits (91), Expect = 1e-04
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 46 QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIY-FIVRLK 104
Q PGG ++ E +AA+RE EE + +++ G + + R+
Sbjct: 65 QIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVG-FHVTPVLGRIA 123
Query: 105 PLTQEITKDDREITE 119
P + + E+ +
Sbjct: 124 PEALDTLRVTPEVAQ 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 1e-04
Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 37/132 (28%)
Query: 6 PDDSESRIPNYA-----------------HT--MIGAGAVVLNDKNQVLVVKEFYRKRPQ 46
+SRIP ++ H+ ++ A ++ D LV
Sbjct: 400 SGLDQSRIP-FSERKLKFSNRFLPVASPFHSHLLVPASDLINKD----LVKNNVSFNAKD 454
Query: 47 WKLP-----GGYV--EMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYF 99
++P G +S I E V + ++ + F+ TH FG
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRL---PVKWETTTQFKATHILDFGPGG--- 508
Query: 100 IVRLKPLTQEIT 111
L LT
Sbjct: 509 ASGLGVLTHRNK 520
Score = 32.3 bits (73), Expect = 0.027
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 18/72 (25%)
Query: 53 YVEMSEDI--GEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEI 110
M D+ A ++V+ A H K +G S I IV P+ I
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNR-----------ADNHF-KDTYGFS-ILDIVINNPVNLTI 1674
Query: 111 ---TKDDREITE 119
+ + I E
Sbjct: 1675 HFGGEKGKRIRE 1686
Score = 30.0 bits (67), Expect = 0.20
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 23 AGAVVLNDKNQVLVVKEFYR-KRPQWKLPGGYV-------------EMSEDIGEAAVREV 68
+ A V++ ++ V VV FYR Q +P + ++ + A++ V
Sbjct: 1772 SLADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 69 FEETNIRT-EFHSVVAF 84
E RT +V +
Sbjct: 1830 VERVGKRTGWLVEIVNY 1846
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 37.1 bits (86), Expect = 5e-04
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 29 NDKNQVLVVKEFYRK---RPQWKLPGGYVEMSEDIGEAAVREVFEET 72
+++VK+ +R + P G ++ E AA+RE+ EET
Sbjct: 74 LHYECIVLVKQ-FRPPMGGYCIEFPAGLIDDGETPEAAALRELEEET 119
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
genomics, escherichia coli putative nudix hydrolase,
PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP:
d.113.1.2
Length = 180
Score = 36.2 bits (84), Expect = 8e-04
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 23/111 (20%)
Query: 26 VVLNDKNQVLVVKEFYRKRPQWKLP---------GGYVEMSEDIGEAAVREVFEETNIRT 76
VV + ++LV ++R + K GG V+ E + E+A RE EE I
Sbjct: 43 VVHDGMGKILV-----QRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAG 97
Query: 77 ---EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
H F + +G ++ V P + E++E W+
Sbjct: 98 VPFAEHGQFYFEDKNCRVWG--ALFSCVSHGPF----ALQEDEVSEVCWLT 142
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 34.6 bits (80), Expect = 0.004
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 22 GAGAVVL---NDKNQVLVVKEF-----YRKRPQWKL--PGGYVEMSEDIGEAAVREVFEE 71
G AV+L +++V+++++ W L G +E E + + A RE EE
Sbjct: 57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEE 116
Query: 72 TNIRTE 77
+ +
Sbjct: 117 AGLIVK 122
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 34.0 bits (77), Expect = 0.005
Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 12/130 (9%)
Query: 2 TKWLPDDSESRIPNY---AHTMIGA--GAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEM 56
+ + + ++ Y H ++ A A + + V+ R + PGG+V+
Sbjct: 18 PRNISREESLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDT 77
Query: 57 SEDIGEAAV-REVFEETNIRTEFHSVV----AFRHTHKAAFGCSDIYFIVRLKPLTQEIT 111
+ E + RE+ EE V + C ++I LK +EI
Sbjct: 78 RDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKL--EEIE 135
Query: 112 KDDREITESK 121
+ + E +K
Sbjct: 136 RIEAEAVNAK 145
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Length = 217
Score = 33.3 bits (75), Expect = 0.012
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 17 AHTMIGA--GAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAV-REVFEETN 73
H ++ A ++ + R + PGG+V+ + E + RE+ EE
Sbjct: 45 CHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREELG 104
Query: 74 IRTEFHSV 81
V
Sbjct: 105 EAAAAFRV 112
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A
{Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Length = 191
Score = 32.6 bits (75), Expect = 0.018
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 22 GAGAVVL---NDKNQVLVVKEF--------YRKRPQWKLPGGYVEMSEDIGEAAVREVFE 70
G GA +L K V+++++F + G ++ E +E E
Sbjct: 45 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPE-VCIRKEAIE 103
Query: 71 ETNIRTE 77
ET
Sbjct: 104 ETGYEVG 110
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3
family, structural protein structure initiative, PSI;
HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Length = 300
Score = 32.3 bits (73), Expect = 0.023
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 49 LPGGYVEMSEDIGEAAVREVFEETNIRTEF----HSVVAFRHTHKAAFGC-SDIYFIVRL 103
+ G + + ++E EE ++ V A + ++ G D F+ L
Sbjct: 154 MVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDL 213
Query: 104 K-PLTQEITKDDREITESKWMD 124
P D E+ +
Sbjct: 214 ALPEDFRPHNTDGEMADFMLWP 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.32
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 16/81 (19%)
Query: 5 LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAA 64
LP + + P ++I + + + ++ KL I E++
Sbjct: 318 LPREVLTTNP-RRLSIIAE--SIRDGLATW----DNWKHVNCDKL--------TTIIESS 362
Query: 65 VREVFEETNIRTEFHSVVAFR 85
+ V E R F + F
Sbjct: 363 L-NVLEPAEYRKMFDRLSVFP 382
Score = 25.2 bits (54), Expect = 8.3
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGG 52
++G+G K + + + Q K+
Sbjct: 156 DGVLGSG------K-TWVALDVCLSYKVQCKMDFK 183
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase,
CDC25 phosphatase, rhodanese, C-MYC epitope,
oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Length = 152
Score = 26.9 bits (59), Expect = 1.5
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 38 KEFYRKRPQWKLPGGYVEM 56
+ FY + YV++
Sbjct: 111 EAFYHMYGDVRPDLMYVKL 129
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate
trapping, active site mutant, hydrolase; 1.52A {Homo
sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A
1cwt_A 2ifd_A
Length = 175
Score = 26.8 bits (59), Expect = 1.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 38 KEFYRKRPQWKLPGGYVEMSED 59
KEF+ + P + P Y M+ +
Sbjct: 138 KEFFPQHPNFCEPQDYRPMNHE 159
>3mk4_A Peroxisomal biogenesis factor 3; membrane, peroxisome, protein
transport; 2.42A {Homo sapiens} PDB: 3ajb_A
Length = 334
Score = 27.0 bits (59), Expect = 1.8
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 37 VKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78
V++ Y Q L G E+ I + AV++V +++
Sbjct: 121 VQQQYLSSIQHLLGDGLTELITVI-KQAVQKVLGSVSLKHSL 161
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
RNA structural genomics consortium, SGC, RNA
degradation, RNA B protein; 1.70A {Homo sapiens}
Length = 214
Score = 26.7 bits (58), Expect = 2.2
Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 49 LPGGYVEMSEDIGEAAV-REVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLT 107
PGG+V+ E + R + + H + + +L
Sbjct: 58 FPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTL-- 115
Query: 108 QEITKDDREITESK 121
+++ + S+
Sbjct: 116 EQLHAVEISAVHSR 129
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell
cycle phosphatase, dual specificity protein phosphatase;
1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A
2uzq_A
Length = 211
Score = 26.6 bits (58), Expect = 2.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 38 KEFYRKRPQWKLPGGYVEMSED 59
KEF+ + P + P Y M+ +
Sbjct: 158 KEFFPQHPNFCEPQDYRPMNHE 179
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 26.2 bits (57), Expect = 2.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 38 KEFYRKRPQWKLPGGYVEMSED 59
KEF+ K + P Y M +
Sbjct: 136 KEFFMKCQSYCEPPSYRPMHHE 157
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 2.70A {Homo sapiens}
Length = 218
Score = 26.5 bits (58), Expect = 2.6
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 12 RIPNYAHTM--IGAGAVVLNDKNQVLVVKEFYRKRPQWKL--PGGYV-EMSEDIGEAAVR 66
R YA + G++ D++ ++ + G V + + E A +
Sbjct: 58 RPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACK 117
Query: 67 EVFEETNIRTEFHSV 81
E +EE +
Sbjct: 118 EAWEECGYHLAPSDL 132
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine
O-acetyltransferase...; ssgcid, structural genomics;
1.95A {Brucella melitensis biovar abortus}
Length = 287
Score = 25.8 bits (57), Expect = 4.1
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 17 AHTMIGAGAVVLND 30
+ I AG+VVL
Sbjct: 239 QCSKIAAGSVVLKS 252
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 25.8 bits (57), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 17 AHTMIGAGAVVLND-KNQVLVV 37
A T++GAG VV+ D + VL +
Sbjct: 188 ADTIVGAGGVVVRDLPDSVLAI 209
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 25.7 bits (56), Expect = 4.9
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 9/52 (17%)
Query: 57 SEDIGEAAVREVFEETNIRTEFH---------SVVAFRHTHKAAFGCSDIYF 99
G AV ++ + FH ++ + K FG DI
Sbjct: 45 DVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILV 96
>2dew_X Protein-arginine deiminase type IV; histone modification enzyme,
hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6
d.126.1.5 PDB: 2dex_X 2dey_X 3b1u_A* 3b1t_A* 2dw5_A*
3apn_A 3apm_A 1wda_A* 1wd9_A* 1wd8_A 4dkt_A*
Length = 671
Score = 25.8 bits (56), Expect = 5.1
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 5 LPDDSESRIPN--YAHTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGE 62
L + IP A A N N +++ K +P + G E
Sbjct: 567 LAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGKHLGIPKPFGPVING-----RCCLE 621
Query: 63 AAVREVFEETNIRTEF 78
V + E ++ F
Sbjct: 622 EKVCSLLEPLGLQCTF 637
>1i8n_A Anti-platelet protein; PAN module, toxin; 2.20A {Haementeria
officinalis} SCOP: g.10.1.2
Length = 126
Score = 25.2 bits (54), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 41 YRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
+ KRP WKLP + +E R++ EE+ +
Sbjct: 47 WSKRPGWKLPDNLLTKTEFTSVDECRKMCEESAV 80
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein,
N-glycan biosynthesis, bacillosamine, structural
genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni}
SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A*
2npo_A
Length = 194
Score = 25.3 bits (56), Expect = 5.5
Identities = 3/14 (21%), Positives = 9/14 (64%)
Query: 17 AHTMIGAGAVVLND 30
+++G GA ++ +
Sbjct: 166 DDSILGGGATLVKN 179
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 25.5 bits (55), Expect = 5.9
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 38 KEFYRKRPQWKLPGGYVEMSED 59
++F+ + + P Y M
Sbjct: 171 RDFFPEYMELCEPQSYCPMHHQ 192
>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A
{Gibberella zeae}
Length = 445
Score = 25.5 bits (56), Expect = 6.1
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 48 KLPGGYVEMSEDIGE-AAVREVFEETNIRTEFH 79
KL GG ++++ A+ + F +R + +
Sbjct: 212 KLKGGVFPPADEVAAIKALHKAFPGVPLRLDPN 244
>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix;
1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB:
1sst_A* 1s80_A 1ssm_A 3gvd_A*
Length = 267
Score = 25.3 bits (56), Expect = 6.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 17 AHTMIGAGAVVLND 30
+ IGA +VVLN
Sbjct: 212 KYAKIGANSVVLNP 225
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 25.3 bits (56), Expect = 7.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 79 HSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDRE 116
+ FR TH+ + +D Y + PL E+ +E
Sbjct: 59 SLMRGFRQTHQPSPWIND-YGTFSIMPLAGELKMSHKE 95
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site,
lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Length = 445
Score = 25.1 bits (55), Expect = 8.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 48 KLPGGYVEMSEDIGE-AAVREVFEETNIRTEFH 79
KL GG E++ A+R F + +R + +
Sbjct: 214 KLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPN 246
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops,
DNA binding protein; 1.85A {Thermus aquaticus} PDB:
2ihe_A 2cwa_A 2ihf_A
Length = 264
Score = 24.7 bits (54), Expect = 9.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 75 RTEFHSVVAFRHTHKAA 91
RT F V A+R + A
Sbjct: 170 RTHFLEVQAWRELAEWA 186
>1z9f_A Single-strand binding protein; TM0604, single stranded
DNA-binding protein, structural GENO joint center for
structural genomics, JCSG; 2.30A {Thermotoga maritima}
Length = 153
Score = 24.7 bits (54), Expect = 9.7
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 71 ETNIRTEFHSVVAFR 85
+ T+F +V F
Sbjct: 57 DDAQTTDFFRIVTFG 71
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A
{Deinococcus radiodurans} SCOP: b.40.4.3
Length = 301
Score = 24.8 bits (54), Expect = 10.0
Identities = 1/11 (9%), Positives = 4/11 (36%)
Query: 75 RTEFHSVVAFR 85
+ + +R
Sbjct: 174 KVHYIDATLWR 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,980,921
Number of extensions: 108097
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 110
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)