RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9980
(124 letters)
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 67.7 bits (165), Expect = 2e-16
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 21 IGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
+GAG VV N K +VL+++ + W P G+ E E + EAAVREV+EET +R E
Sbjct: 3 LGAGGVVFNAKREVLLLR---DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59
Query: 81 VVAFRHTHKAAFGCSDI-YFIVRLKPLTQEITKDDREITESKWMD 124
+ ++ +F++R + + + +T + W
Sbjct: 60 PLYPTRYVNPKGVEREVHWFLMR----GEGAPRLEEGMTGAGWFS 100
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 67.1 bits (163), Expect = 7e-16
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 12 RIPNYAHTMIGAGAVVLN-DKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFE 70
RIP GA++L+ Q ++VK ++ W P G ++ E + A+REV+E
Sbjct: 1 RIPVR-------GAIMLDMSMQQCVLVKG-WKASSGWGFPKGKIDKDESDVDCAIREVYE 52
Query: 71 ETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
ET +Y I + T+ ++ +EI++ +W +
Sbjct: 53 ETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHN 106
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 66.7 bits (162), Expect = 1e-15
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 6/113 (5%)
Query: 18 HTMIGAGAVVLNDKNQVLVVKEFYRK-----RPQWKLPGGYVEMSEDIGEAAVREVFEET 72
+ AG V+LN++ +L+V+E W +P G VE E+ +AAVRE EET
Sbjct: 10 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEET 69
Query: 73 NIRTEFHSVVA-FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+R + + ++ +P EI E+ ++
Sbjct: 70 GLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVS 122
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 63.7 bits (154), Expect = 1e-14
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 25 AVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
A V+ ++ L+V+E R + P G++E E I +A REV EET +
Sbjct: 7 AAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTG 66
Query: 84 FRHTHKAAFGCSDIYFIVRLKPLTQEIT-KDDREITESKWMD 124
H A+ G + + F + ++ + K D I + W
Sbjct: 67 IYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFS 108
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 59.4 bits (143), Expect = 6e-13
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 18 HTMIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
T A +V +N +V+ + + LPGG +E +E EA REV EE I E
Sbjct: 15 QTRYAAYIIVSKPENNTMVLVQ--APNGAYFLPGGEIEGTETKEEAIHREVLEELGISVE 72
Query: 78 FHSVVAFRHTHKAAFGCSDIYFIVR---LKPLTQEITKDDREITESKWMD 124
+ + + Y+ + +++++ W+
Sbjct: 73 IGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVA 122
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 59.5 bits (143), Expect = 1e-12
Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 3 KWLPDDSESRIPNYAHTMIGAGAVVL-----NDKNQVLVVKEFYRKRP-QWKLPGGYVEM 56
++L + +P Y + V+L D+ +VL+++ W LPGG+V
Sbjct: 20 EFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNR 79
Query: 57 SEDIGEAAVREVFEETNIRTEFHSVVAFR-HTHKAAFGCSDIYFIVRLKPLTQEITKDDR 115
+E ++ +RE EET + ++ + + + L + +E
Sbjct: 80 NESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGD 139
Query: 116 EITESKWMD 124
+ E W +
Sbjct: 140 DAKEVHWFN 148
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 57.8 bits (139), Expect = 2e-12
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVV 82
V + + +L+ + + + G+VE+ E + +A REV EE+ I+ + V
Sbjct: 5 CIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYV 64
Query: 83 AFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ + + + +I D +E+ E+ W
Sbjct: 65 TSQPWPF----PQSLMTAFMAEYDSGDIVIDPKELLEANWYR 102
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 57.9 bits (139), Expect = 2e-12
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 25 AVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVAF 84
V N+ + L+++ W P G+VE ED E A+R EE I +++
Sbjct: 22 PKVDNNAIEFLLLQASDGIH-HWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEG 80
Query: 85 RHTHKAAFGCSD----IYFIVRLKPLTQEITKDDREITESKWMD 124
+ IY++ +K EI E +W+
Sbjct: 81 FKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSH-EHQAYRWLG 123
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
{Escherichia coli [TaxId: 562]}
Length = 160
Score = 57.9 bits (139), Expect = 3e-12
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 4 WLPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGE 62
+L + + + ++ +V N + + L+ K R W +PGG V+ E +
Sbjct: 3 FLRQEDFATVVRSTP-LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEA 61
Query: 63 AAVREVFEETNIR---TEFHSVVAFRHTHKAAFGCSD-----IYFIVRLKPLTQEITKDD 114
A R E +R T ++H + F +D + R + +E+ D
Sbjct: 62 AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPD 121
Query: 115 REITESKWMD 124
+ + +W+
Sbjct: 122 EQHDDYRWLT 131
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 55.9 bits (134), Expect = 9e-12
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 10 ESRIPNYAHTMIGAGAVVLNDKNQ---VLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVR 66
++R + A + +++ +LV R +W +PGG +E E+ AAVR
Sbjct: 1 QTRTYDGDGYKKRAACLCFRSESEEEVLLVSS--SRHPDRWIVPGGGMEPEEEPSVAAVR 58
Query: 67 EVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
EV EE ++ +V + +++ + + ++ + +W
Sbjct: 59 EVCEEAGVKGTLGRLVGIFENQE--RKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFK 114
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 53.0 bits (126), Expect = 2e-10
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIR---T 76
MI V++ + +VL+VK ++ + PGG+VE +E EA RE EET I
Sbjct: 1 MIVTSGVLVEN-GKVLLVKH--KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI 57
Query: 77 EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQ-------EITKDDREITESKWMD 124
F + + + + +V+ T + + ++ +W+D
Sbjct: 58 GFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWID 112
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 50.6 bits (120), Expect = 2e-09
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 22/124 (17%)
Query: 22 GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSV 81
G ++N+ ++ W++P G ++ ED AA+RE+ EET + +
Sbjct: 16 NVGICLMNNDKKIFAASRLDIPD-AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIA 74
Query: 82 VAFRHTH----------------KAAFGCSDIYFIVRLKPLTQEIT-----KDDREITES 120
G + +F+ + QEI + E E
Sbjct: 75 EVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEW 134
Query: 121 KWMD 124
W+
Sbjct: 135 SWVT 138
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 50.1 bits (119), Expect = 3e-09
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 25 AVVLNDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHSVVA 83
V++ +VL+ + +W GG V+ E I + A RE+ EE+ + ++
Sbjct: 9 LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL--TVDALHK 66
Query: 84 FRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
G ++ + + + T + + W
Sbjct: 67 VGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQ 107
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 158
Score = 49.3 bits (117), Expect = 4e-09
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 22 GAGAVVLNDKNQVLVVKEFY--RKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
A AV+ + ++L V++ ++P G +E ED EAA RE+ E+T + +
Sbjct: 25 PAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLT 84
Query: 80 SVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ ++ + + ++ LK E D+ E E WM
Sbjct: 85 YLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMR 127
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 46.8 bits (110), Expect = 3e-08
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRP----QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEF 78
+ + N K Q+LV + K+ G+ ++ E +A +R E +
Sbjct: 5 FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 64
Query: 79 HSVVAFRHTHKAAF---GCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ ++A + V T + +D E+ + +W D
Sbjct: 65 PESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD 113
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 47.4 bits (112), Expect = 5e-08
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 23 AGAVVLNDKN-----QVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
+G +++ + Q + +K + +W +PGG V+ E I RE EE +
Sbjct: 125 SGNKIMHPVSGKHILQFVAIKR--KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQ 182
Query: 78 FHSVVAFRHTHK 89
S K
Sbjct: 183 KTSAEKREIEEK 194
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia
coli [TaxId: 562]}
Length = 186
Score = 45.1 bits (106), Expect = 2e-07
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 3/122 (2%)
Query: 5 LPDDSESRIPNYAHTMIGAGAVVLNDKNQVLVVKEFY--RKRPQWKLPGGYVEMSEDIGE 62
+ T A +V + +++++E+ + + G ++ E + E
Sbjct: 32 FSNGVRRVYERMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYE 91
Query: 63 AAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKW 122
AA RE+ EE + + ++ S + +V + + D+ E
Sbjct: 92 AANRELKEEVGFGAN-DLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVR 150
Query: 123 MD 124
Sbjct: 151 WP 152
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 44.4 bits (104), Expect = 3e-07
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 20 MIGAGAVVLNDKNQVLVVKEFYRKR--PQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
+ + + +V++ + PGG+VE E E+ +RE++EET + +
Sbjct: 9 LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQ 68
Query: 78 FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+V G I + + + E E W+
Sbjct: 69 NPQLVGI-KNWPLDTGGRYIVICYKATEFSGTL--QSSEEGEVSWVQ 112
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase
(MutT) {Escherichia coli [TaxId: 562]}
Length = 129
Score = 42.6 bits (99), Expect = 1e-06
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRP--QWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFHS 80
A ++ N+ N++ + + + + PGG +EM E +A VRE+ EE I + S
Sbjct: 7 AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFS 66
Query: 81 VVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ + +++V E +E +WM
Sbjct: 67 LFEKLEYEFPDRHITLWFWLVE----RWEGEPWGKEGQPGEWMS 106
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal
domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 42.5 bits (99), Expect = 1e-06
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 14 PNYAHTMIGAGAVVL---NDKNQVLVVKEFYRKRP-QWKLPGGYVEMSEDIGEAAVREVF 69
+ +G ++ + +L++K + +W L GG+V+ E + +AA R +
Sbjct: 4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLA 63
Query: 70 EETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
E T + + V G + E ++ + + W++
Sbjct: 64 ELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVN 118
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 42.2 bits (98), Expect = 1e-06
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 23 AGAVVL---NDKNQVLVVKEFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTEFH 79
AG V+ K + L+++ Y W P G+V+ ED +AA+RE EE NI E
Sbjct: 5 AGLVIYRKLAGKIEFLLLQASYPPH-HWTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 63
Query: 80 SVVAFRHTHKAAFGCSDIYFI--VRLKPLTQEITKDDREITESKWMD 124
++ H + K + + E KW +
Sbjct: 64 TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCE 110
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 41.6 bits (97), Expect = 4e-06
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 8 DSESRIPNY---AHTMI-----GAGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMSED 59
+ ++ Y H ++ + + +L++ R + PGG+V+ +
Sbjct: 11 EESLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMM---RFDGRLGFPGGFVDTRDI 67
Query: 60 IGEAAV-REVFEETNIRTEFHSVVAFRH 86
E + RE+ EE V +
Sbjct: 68 SLEEGLKRELEEELGPALATVEVTEDDY 95
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 41.4 bits (96), Expect = 6e-06
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 8/122 (6%)
Query: 10 ESRIPNYAHTMIGAGAVVL-----NDKNQVLVVKEFYRKRP---QWKLPGGYVEMSEDIG 61
R A VL +VL+ Q PGG ++ E
Sbjct: 18 SGRTRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPT 77
Query: 62 EAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESK 121
+AA+RE EE + +++ G + R+ P + + E+ +
Sbjct: 78 QAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQII 137
Query: 122 WM 123
Sbjct: 138 TP 139
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079
{Deinococcus radiodurans str. R1 (Deinococcus
radiodurans R1) [TaxId: 243230]}
Length = 162
Score = 39.4 bits (91), Expect = 2e-05
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 5/106 (4%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQWKL----PGGYVEMSEDIGEAAVREVFEETNIRTEF 78
A + N + Q+ + + K GG V+ E EA RE EE N+ +
Sbjct: 31 VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 90
Query: 79 HSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
S + + V + +I+ +W+
Sbjct: 91 LSWRPL-ASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLT 135
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia
coli [TaxId: 562]}
Length = 161
Score = 37.1 bits (85), Expect = 1e-04
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 22 GAGAVVLNDKNQVLVVK----EFYRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNIRTE 77
VV + ++LV + + + GG V+ E + E+A RE EE I
Sbjct: 32 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 91
Query: 78 FHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
+ + F + E++E W+
Sbjct: 92 PFAEHGQFYFEDKNCRVWGALFSCVSH---GPFALQEDEVSEVCWLT 135
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 35.8 bits (82), Expect = 5e-04
Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 5 LPDDSESRIPNYAHTMIGAGAVVL---NDKNQVLVVKEFY-------RKRPQWKLPGGYV 54
L + S G AV+L +++V+++++ ++ G +
Sbjct: 40 LFNGQMSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMI 99
Query: 55 EMSEDIGEAAVREVFEETNIRTEFHSVVAFRHTHKAAFGCSDIYFIVRLKPLT---QEIT 111
E E + + A RE EE + + V + + T
Sbjct: 100 EEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGL 159
Query: 112 KDDREITESKWMD 124
D+ E +
Sbjct: 160 ADENEDIRVHVVS 172
>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 127
Score = 31.6 bits (71), Expect = 0.011
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 18/108 (16%)
Query: 23 AGAVVLNDKNQVLVVKEFYRKRPQWKLPGGYVEMS------EDIGEAAVREVFEETNIRT 76
A AV+ +D+ +VL+ KR L E D E + V E+ ++
Sbjct: 7 AVAVLADDEGRVLIR-----KRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQV 61
Query: 77 EFHSVVAFRHTHKAAFGCSDIYFIVRLKPLTQEITKDDREITESKWMD 124
E + + + AF + + +L + +
Sbjct: 62 E---LTEPIVSFEHAFS----HLVWQLTVFPGRLVHGGPVEEPYRLAP 102
>d1i8na_ g.10.1.2 (A:) Anti-platelet protein {Leech (Haementeria
officinalis) [TaxId: 6410]}
Length = 89
Score = 25.1 bits (54), Expect = 1.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 41 YRKRPQWKLPGGYVEMSEDIGEAAVREVFEETNI 74
+ KRP WKLP + +E R++ EE+ +
Sbjct: 11 WSKRPGWKLPDNLLTKTEFTSVDECRKMCEESAV 44
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 25.5 bits (55), Expect = 1.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 38 KEFYRKRPQWKLPGGYVEMSED 59
KEF+ + P + P Y M+ +
Sbjct: 137 KEFFPQHPNFCEPQDYRPMNHE 158
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 25.5 bits (55), Expect = 1.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 38 KEFYRKRPQWKLPGGYVEMSED 59
KEF+ K + P Y M +
Sbjct: 136 KEFFMKCQSYCEPPSYRPMHHE 157
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
influenzae [TaxId: 727]}
Length = 241
Score = 24.3 bits (52), Expect = 5.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 18 HTMIGAGAVVLND 30
+ IGA +VVLN
Sbjct: 213 YAKIGANSVVLNP 225
>d1c6vx_ b.34.7.1 (X:) DNA-binding domain of retroviral integrase
{Simian immunodeficiency virus [TaxId: 11723]}
Length = 55
Score = 22.4 bits (48), Expect = 8.5
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 22 GAGAVVLNDKNQVLVV 37
G GAV+L + VV
Sbjct: 30 GEGAVLLKVGTDIKVV 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.408
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 478,345
Number of extensions: 19950
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 42
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)