BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9982
(222 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/106 (51%), Positives = 68/106 (64%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SP
Sbjct: 1434 TTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1493
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
AY+ SPAY+ S AY+ S AY+ SPAY+ SP Y + A Q
Sbjct: 1494 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPSTRAKDQ 1539
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/101 (53%), Positives = 67/101 (66%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+ SPAY+
Sbjct: 1439 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1498
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
S AY+ S AY+ SPAY+ SPAY+ SP Y + A Q
Sbjct: 1499 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPSTRAKDQ 1539
>gi|294876120|ref|XP_002767561.1| P35 antigen, putative [Perkinsus marinus ATCC 50983]
gi|239869221|gb|EER00279.1| P35 antigen, putative [Perkinsus marinus ATCC 50983]
Length = 170
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 87/144 (60%), Gaps = 7/144 (4%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 11 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 70
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY--TQVILNKI 175
Y+ SPAY+ S AY+ S AY+ SPAY+ SP+Y+ SPAY+ S AY T +
Sbjct: 71 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 130
Query: 176 RPGRESNSRSSAYEAFFHEWVWMS 199
P S A++H V S
Sbjct: 131 SPAYSPTS-----PAYYHPLVTSS 149
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 72/118 (61%), Gaps = 16/118 (13%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SP+Y+ SPA
Sbjct: 53 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPA 112
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAY----------------TQVSPAYTQVSPA 159
Y+ SPAY+ S AY+ S AY+ SPAY + SPAY+ SP+
Sbjct: 113 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYYHPLVTSSDEGPVVRYSPTSPAYSNTSPS 170
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1649 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1708
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AYT
Sbjct: 1709 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYT 1758
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 79/110 (71%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ +SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1607 SPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1666
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1667 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1716
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1613 MSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1672
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1673 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1723
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1621 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1680
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1681 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1730
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1628 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1687
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1688 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1737
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1635 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1694
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1695 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1744
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1642 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1701
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1702 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1751
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1684 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1743
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AYT AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1744 SPTSPAYSPTSPAYTP---AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1790
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1670 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1729
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAYT PAY+ SPAY+ S AY+
Sbjct: 1730 SPTSPAYSPTSPAYSPTSPAYSPTSPAYT---PAYSPTSPAYSPTSPAYS 1776
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1677 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1736
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AYT PAY+ SPAY+ SPAY+ S AY+
Sbjct: 1737 SPTSPAYSPTSPAYSPTSPAYT---PAYSPTSPAYSPTSPAYSPTSPAYS 1783
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1698 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1757
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
T PAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1758 T---PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1804
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 76/110 (69%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAYT PAY+ SPAY
Sbjct: 1712 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYT---PAYSPTSPAY 1768
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S Y+
Sbjct: 1769 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGYS 1818
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 75/114 (65%), Gaps = 4/114 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP----VSPAYTQVSPAYTQV 114
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAYTP SPAY+ SPAY+
Sbjct: 1719 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPT 1778
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SP Y+ SP+Y+ S Y
Sbjct: 1779 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGYSPTSPSYSPASPEYN 1832
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+ SPA SP + SP + SPA++ SP P SPAY+P+SPAY+ SPAY+ SP
Sbjct: 1571 SFSPAAGAFSPMASPASPGFMAASPAHSPASPLN-PTSPAYSPMSPAYSPTSPAYSPTSP 1629
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
AY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1630 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1681
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 13/123 (10%)
Query: 59 SPAYTQVSPAYTQVSP------AYTQVSPAYT----Q---VSPAYIPVSPAYTPVSPAYT 105
SP + SPA++ SP AY+ +SPAY+ SPAY P SPAY+P SPAY+
Sbjct: 1587 SPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1646
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SPAY+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S
Sbjct: 1647 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1706
Query: 166 AYT 168
AY+
Sbjct: 1707 AYS 1709
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 12 GTLTVEIFLLVFLLLNVLSYIL--IEKFKRKDLEDYLSTDED----EATVYTVSPAYTQV 65
GT +++ L L N + Y I++ + ++ S D+ AT + +P ++
Sbjct: 1503 GTGIMDLVLDAKKLANAIEYEASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFSAS 1562
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY-------------TPVSPAYTQVSPAYT 112
SP SP SPA SP P SP + P SPAY+ +SPAY+
Sbjct: 1563 SP----FSPGGGSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYS 1618
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1619 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1674
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1642 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1701
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AYT
Sbjct: 1702 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYT 1751
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 79/110 (71%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ +SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1607 SPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1666
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1667 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1716
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 79/111 (71%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1613 MSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1672
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1673 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1723
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1621 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1680
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1681 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1730
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1628 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1687
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1688 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1737
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1635 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1694
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1695 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1744
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1677 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1736
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AYT AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1737 SPTSPAYSPTSPAYTP---AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1783
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1684 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1743
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAYT AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1744 SPTSPAYTP---AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1790
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1663 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1722
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAYT PAY+ SPAY+ S AY+
Sbjct: 1723 SPTSPAYSPTSPAYSPTSPAYSPTSPAYT---PAYSPTSPAYSPTSPAYS 1769
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1670 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1729
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AYT PAY+ SPAY+ SPAY+ S AY+
Sbjct: 1730 SPTSPAYSPTSPAYSPTSPAYT---PAYSPTSPAYSPTSPAYSPTSPAYS 1776
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAYT PAY
Sbjct: 1698 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYT---PAY 1754
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1755 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1804
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAYT PAY+ SPAY
Sbjct: 1705 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYT---PAYSPTSPAY 1761
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1762 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1811
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 76/114 (66%), Gaps = 4/114 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP----VSPAYTQVSPAYTQV 114
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAYTP SPAY+ SPAY+
Sbjct: 1712 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPT 1771
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP+Y+ S Y
Sbjct: 1772 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPASPEYN 1825
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA SP + SP + SPA++ SP P SPAY+P+SPAY+ SPAY+ SPAY
Sbjct: 1573 SPAAGAFSPMASPASPGFMAASPAHSPASPLN-PTSPAYSPMSPAYSPTSPAYSPTSPAY 1631
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1632 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1681
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 13/123 (10%)
Query: 59 SPAYTQVSPAYTQVSP------AYTQVSPAYT----Q---VSPAYIPVSPAYTPVSPAYT 105
SP + SPA++ SP AY+ +SPAY+ SPAY P SPAY+P SPAY+
Sbjct: 1587 SPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1646
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SPAY+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S
Sbjct: 1647 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1706
Query: 166 AYT 168
AY+
Sbjct: 1707 AYS 1709
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 88/176 (50%), Gaps = 23/176 (13%)
Query: 12 GTLTVEIFLLVFLLLNVLSYIL--IEKFKRKDLEDYLSTDED----EATVYTVSPAYTQV 65
GT +++ L L N + Y I++ + ++ S D+ AT + +P ++
Sbjct: 1503 GTGIMDLVLDAKKLANAIEYEASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFSAS 1562
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY-------------TPVSPAYTQVSPAYT 112
SP SP SPA SP P SP + P SPAY+ +SPAY+
Sbjct: 1563 SP----FSPGGGSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYS 1618
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1619 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1674
>gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
anathema]
Length = 1690
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1510 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1569
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1570 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS 1619
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1517 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1576
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1577 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS 1626
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1524 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1583
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1584 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS 1633
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1531 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1590
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1591 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS 1640
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1538 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1597
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1598 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS 1647
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 77/109 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1545 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1604
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY
Sbjct: 1605 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1653
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1552 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1611
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY S AY+
Sbjct: 1612 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYGPASPAYS 1661
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1559 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1618
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY SPAY+ S AY+
Sbjct: 1619 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYGPASPAYSPASPAYS 1668
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1566 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1625
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY SPAY+ SPAY+ S AY+
Sbjct: 1626 SPASPAYSPASPAYSPASPAYSPASPAYGPASPAYSPASPAYSPASPAYS 1675
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 76/109 (69%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1573 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1632
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SPAY+ S AY+ S AY SPAY+ SPAY+ SPAY+ S AY
Sbjct: 1633 SPASPAYSPASPAYSPASPAYGPASPAYSPASPAYSPASPAYSPASPAY 1681
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+
Sbjct: 1505 GYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSP 1564
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1565 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS 1612
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 68/100 (68%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1587 SPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAY 1646
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SPAY S AY+ S AY+ SPAY+ SPAY P
Sbjct: 1647 SPASPAYGPASPAYSPASPAYSPASPAYSPASPAYDPAEP 1686
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
Query: 89 AYIPV--SPAY---TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
YIPV SPA +P SPAY+ SPAY+ SPAY+ SPAY+ S AY+ S AY+ S
Sbjct: 1493 GYIPVPGSPAAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPAS 1552
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYT 168
PAY+ SPAY+ SPAY+ S AY+
Sbjct: 1553 PAYSPASPAYSPASPAYSPASPAYS 1577
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 91 IPVSPA---YTPVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSLAYTQVSLAYTQVSP 144
+P SP Y PV P SPA SPA SPAY+ S AY+ S AY+ SP
Sbjct: 1485 VPSSPGPFGYIPV-PG----SPAAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPASP 1539
Query: 145 AYTQVSPAYTQVSPAYTQVSSAYT 168
AY+ SPAY+ SPAY+ S AY+
Sbjct: 1540 AYSPASPAYSPASPAYSPASPAYS 1563
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1531 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1590
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1591 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1640
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1538 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1597
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1598 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1647
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1545 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1604
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1605 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1654
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1552 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1611
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1612 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1661
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1524 SPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1583
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1584 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1633
Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1559 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1618
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S Y+
Sbjct: 1619 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYS 1668
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 76/110 (69%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1566 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1625
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP Y+ S Y+
Sbjct: 1626 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSPQYS 1675
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 75/110 (68%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1573 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1632
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SP Y+ SP Y+ S Y+
Sbjct: 1633 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSPQYSPTSPQYS 1682
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 74/110 (67%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1580 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1639
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1640 SPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1689
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1587 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1646
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAY----TQVSPAYTQVSPAYTQVSSA 166
+ SPAY+ S AY+ S Y+ SP Y Q SP Q SP +S A
Sbjct: 1647 SPTSPAYSPTSPAYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSLGLSDA 1698
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1527 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1586
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1587 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1636
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 75/108 (69%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+
Sbjct: 1522 GYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1581
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1582 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1629
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P
Sbjct: 1597 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1637
>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1904
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1648 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1707
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1708 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1757
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1655 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1714
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1715 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1764
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1662 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1721
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1722 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1771
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1669 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1728
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1729 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1778
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1676 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1735
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1736 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1785
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1683 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1742
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1743 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1792
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1690 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1749
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1750 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1799
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1697 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1756
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1757 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1806
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1704 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1763
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1764 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1813
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1711 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1770
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1771 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1820
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 75/106 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1718 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1777
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S
Sbjct: 1778 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1823
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 71/101 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1725 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1784
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP
Sbjct: 1785 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPG 1825
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SPAY+ SPAY+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPA
Sbjct: 1647 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1706
Query: 160 YTQVSSAYT 168
Y+ S AY+
Sbjct: 1707 YSPTSPAYS 1715
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
Length = 1879
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1557 SPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1616
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1617 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1666
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 77/111 (69%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP Y+ SP Y+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1549 MSPGYSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1608
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1609 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1659
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1564 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1623
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S ++
Sbjct: 1624 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGFS 1673
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1571 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1630
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP ++ S AY+
Sbjct: 1631 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGFSPTSPAYS 1680
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 76/110 (69%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1578 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1637
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SP ++ SPAY+ S Y+
Sbjct: 1638 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGFSPTSPAYSPTSPTYS 1687
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1585 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1644
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SP ++ SPAY+ SP Y+ S Y+
Sbjct: 1645 SPTSPAYSPTSPAYSPTSPAYSPTSPGFSPTSPAYSPTSPTYSPTSPTYS 1694
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 74/110 (67%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1592 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1651
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S ++ SPAY+ SP Y+ SP Y+ S Y+
Sbjct: 1652 SPTSPAYSPTSPAYSPTSPGFSPTSPAYSPTSPTYSPTSPTYSPTSPTYS 1701
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 73/110 (66%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1599 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1658
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S ++ S AY+ SP Y+ SP Y+ SP Y+ AY+
Sbjct: 1659 SPTSPAYSPTSPGFSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTGPAYS 1708
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 73/111 (65%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V A++ V + +SP Y+ SP Y+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1535 VGGAFSPVHGSGAPMSPGYSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1594
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1595 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1645
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 65/110 (59%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SP + P SPAY+P SP Y+ SP Y+ SP Y
Sbjct: 1641 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGFSPTSPAYSPTSPTYSPTSPTYSPTSPTY 1700
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ PAY+ S + ++ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1701 SPTGPAYSPTSPSERPTGSRFSPASPNYSPTSPNYSPTSPQYSPTSPQYS 1750
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 64/110 (58%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SP ++ SPAY P SP Y+P SP Y+ SP Y+ PAY
Sbjct: 1648 SPAYSPTSPAYSPTSPAYSPTSPGFSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTGPAY 1707
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP+ ++ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1708 SPTSPSERPTGSRFSPASPNYSPTSPNYSPTSPQYSPTSPQYSPTSPQYS 1757
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA- 117
SPAY+ SPAY+ SP ++ SPAY+ SP Y P SP Y+P SP Y+ PAY+ SP+
Sbjct: 1655 SPAYSPTSPAYSPTSPGFSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTGPAYSPTSPSE 1714
Query: 118 ------YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
++ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1715 RPTGSRFSPASPNYSPTSPNYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1771
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 67/138 (48%), Gaps = 32/138 (23%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SP ++ SPAY
Sbjct: 1620 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGFSPTSPAY 1679
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYT------------------------------- 147
+ SP Y+ S Y+ S Y+ PAY+
Sbjct: 1680 SPTSPTYSPTSPTYSPTSPTYSPTGPAYSPTSPSERPTGSRFSPASPNYSPTSPNYSPTS 1739
Query: 148 -QVSPAYTQVSPAYTQVS 164
Q SP Q SP Q S
Sbjct: 1740 PQYSPTSPQYSPTSPQYS 1757
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 25/128 (19%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA--------------YTPVSPAY 104
SPAY+ SP Y+ SP Y+ SP Y+ PAY P SP+ Y+P SP Y
Sbjct: 1676 SPAYSPTSPTYSPTSPTYSPTSPTYSPTGPAYSPTSPSERPTGSRFSPASPNYSPTSPNY 1735
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT-----QVSPAYT---QVSPAYT-- 154
+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ + SPAY+ VSP Y+
Sbjct: 1736 SPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTAAAKPSPAYSPTADVSPVYSPT 1795
Query: 155 -QVSPAYT 161
VSP+Y+
Sbjct: 1796 ADVSPSYS 1803
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1509 SPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1568
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1569 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1618
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1516 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1575
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S Y+
Sbjct: 1576 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYS 1625
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 74/108 (68%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+
Sbjct: 1504 GYSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1563
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1564 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1611
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 72/109 (66%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P ++ Y+ SP Y+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+
Sbjct: 1496 PGFSPGGAGYSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1555
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1556 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1604
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 73/110 (66%), Gaps = 4/110 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1523 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1582
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY----TQVSPAYTQVS 164
+ SPAY+ S AY+ S AY+ SPAY+ SPAY Q SP +S
Sbjct: 1583 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTGGTLS 1632
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 72/114 (63%), Gaps = 11/114 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1530 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1589
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ-----------VSPAYT 161
+ SPAY+ S AY+ S AY+ SPAY+ SP Y+ SP Y+
Sbjct: 1590 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTGGTLSPSASPTSPIYS 1643
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 70/114 (61%), Gaps = 11/114 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1537 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1596
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV-----------SPAYTQVSPAYT 161
+ SPAY+ S AY+ S AY+ SP Y+ SP Y+ P Y+
Sbjct: 1597 SPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTGGTLSPSASPTSPIYSPSGPQYS 1650
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 67/111 (60%), Gaps = 11/111 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1544 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1603
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQV-----------SPAYTQVSPAYTQVSP 158
+ SPAY+ S AY+ S Y+ SP Y+ P Y+ +P
Sbjct: 1604 SPTSPAYSPTSPAYSPTSPQYSPTGGTLSPSASPTSPIYSPSGPQYSPQAP 1654
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 79/111 (71%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1588 MSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1647
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPA++ S AY+
Sbjct: 1648 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAHSPTSPAYS 1698
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1596 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1655
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPA++ SPAY+ S AY+
Sbjct: 1656 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAHSPTSPAYSPTSPAYS 1705
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1603 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1662
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPA++ SPAY+ SPAY+ S AY+
Sbjct: 1663 SPTSPAYSPTSPAYSPTSPAYSPTSPAHSPTSPAYSPTSPAYSPTSPAYS 1712
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1610 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1669
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S A++ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1670 SPTSPAYSPTSPAYSPTSPAHSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1719
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1617 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1676
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S A++ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1677 SPTSPAYSPTSPAHSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1726
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1624 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1683
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPA++ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1684 SPTSPAHSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1733
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA+
Sbjct: 1631 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAH 1690
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1691 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1740
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPA++ SPAY
Sbjct: 1638 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAHSPTSPAY 1697
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1698 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1747
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPA++ SPAY+ SPAY
Sbjct: 1645 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAHSPTSPAYSPTSPAY 1704
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1705 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1754
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPA++P SPAY+ SPAY+ SPAY
Sbjct: 1652 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAHSPTSPAYSPTSPAYSPTSPAY 1711
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1712 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1761
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 23/135 (17%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY--------------- 97
AT +T +P ++ SP SP SPA SP P SP +
Sbjct: 1519 ATPFTSTPGFSASSP----FSPGGGSFSPAAGTFSPMASPASPGFMSSPGFSVASPARSP 1574
Query: 98 ----TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
P SPA++ +SPAY+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY
Sbjct: 1575 GVSLDPASPAFSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1634
Query: 154 TQVSPAYTQVSSAYT 168
+ SPAY+ S AY+
Sbjct: 1635 SPTSPAYSPTSPAYS 1649
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1510 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1569
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1570 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1619
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1517 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1576
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1577 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1626
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 78/111 (70%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SPAY SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1502 LSPAYAPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1561
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1562 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1612
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/109 (57%), Positives = 77/109 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1524 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1583
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY
Sbjct: 1584 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1632
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 75/117 (64%), Gaps = 9/117 (7%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ---VSPAYIPVSPAYTPVSPAYTQVSPAY 111
VY VSP +SPAY SPAY+ SP SPAY P SPAY+P SPAY+ SPAY
Sbjct: 1495 VYGVSPV---LSPAYAPTSPAYSPTSP---AYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1548
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1549 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1605
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 76/132 (57%), Gaps = 16/132 (12%)
Query: 53 ATVYTVSPAYTQVSPAYTQ-------------VSPAYTQ---VSPAYTQVSPAYIPVSPA 96
+ +Y SPA +P + +SP Y +SPAY SPAY P SPA
Sbjct: 1460 SGMYGASPARGGATPGWGDASFSPSIGGVQSVLSPVYGVSPVLSPAYAPTSPAYSPTSPA 1519
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
Y+P SPAY+ SPAY+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+
Sbjct: 1520 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1579
Query: 157 SPAYTQVSSAYT 168
SPAY+ S AY+
Sbjct: 1580 SPAYSPTSPAYS 1591
>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1706
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1528 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1587
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1588 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1637
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1535 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1594
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1595 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1644
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1542 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1601
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1602 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1651
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1549 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1608
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1609 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1658
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1556 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1615
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1616 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1665
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1563 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1622
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1623 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1672
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1570 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1629
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1630 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1679
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1577 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1636
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1637 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1686
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1584 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1643
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1644 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1693
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1521 SPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1580
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1581 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1630
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 4/105 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1591 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1650
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT----QVSPA 159
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP+
Sbjct: 1651 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPS 1695
>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
Length = 1754
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 80/118 (67%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1590 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1649
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S + I ++R
Sbjct: 1650 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVWLMPISRQVR 1707
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1583 SPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1642
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1643 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1692
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 78/121 (64%), Gaps = 11/121 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1618 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1677
Query: 119 TQVSPAYTQVSLAYTQVS-----------LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY
Sbjct: 1678 SPTSPAYSPTSPAYSPTSPVWLMPISRQVRAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1737
Query: 168 T 168
+
Sbjct: 1738 S 1738
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 78/121 (64%), Gaps = 11/121 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1625 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1684
Query: 119 TQVSPAYTQVS-----------LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY
Sbjct: 1685 SPTSPAYSPTSPVWLMPISRQVRAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1744
Query: 168 T 168
+
Sbjct: 1745 S 1745
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 76/118 (64%), Gaps = 11/118 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1632 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1691
Query: 119 TQVSP-----------AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ SP AY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ +S
Sbjct: 1692 SPTSPVWLMPISRQVRAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPLSD 1749
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Query: 64 QVSPAYTQ---VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
+ P+ Q SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+
Sbjct: 1578 EFGPSSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1637
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1638 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1685
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 69/114 (60%), Gaps = 7/114 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA----YIPVSPAYTPVSPAYTQVSPAYTQV 114
SPA SPA + SP+Y SPA + + P SP Y+P SPAY+ SPAY+
Sbjct: 1547 SPAVGGFSPAVSGFSPSY---SPAGGSGTSGSYGEFGPSSPQYSPTSPAYSPTSPAYSPT 1603
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1604 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1657
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV---------------SLAYTQVSLAYTQV 142
+P A SPA SPA + SP+Y+ S Y+ S AY+
Sbjct: 1537 SPFVDAAGGFSPAVGGFSPAVSGFSPSYSPAGGSGTSGSYGEFGPSSPQYSPTSPAYSPT 1596
Query: 143 SPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1597 SPAYSPTSPAYSPTSPAYSPTSPAYS 1622
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 76/111 (68%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP Y+ SP Y+ SP Y+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1546 MSPGYSPTSPGYSPTSPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1605
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1606 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1656
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 75/110 (68%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1561 SPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1620
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S AY+ SPAY+ SPAY SPAY+ S Y+
Sbjct: 1621 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY---SPAYSPTSPQYS 1667
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1568 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1627
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SPAY+ S AY+ S AY+ SPAY SPAY+ SP Y+ S
Sbjct: 1628 SPTSPAYSPTSPAYSPTSPAYSPTSPAY---SPAYSPTSPQYSPTS 1670
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1596 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1655
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
SPAY+ S Y+ S + + SP Y+ SP Y+ SP Y+
Sbjct: 1656 ---SPAYSPTSPQYSPTSPSMSPTSPRYSPTSPNYSPTSPNYS 1695
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P+SP Y+P SP Y+ SP Y+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SP
Sbjct: 1545 PMSPGYSPTSPGYSPTSPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1604
Query: 152 AYTQVSPAYTQVSSAYT 168
AY+ SPAY+ S AY+
Sbjct: 1605 AYSPTSPAYSPTSPAYS 1621
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SPAY+ SP Y+ SP+ + SP Y+ SP Y P SP Y+P
Sbjct: 1656 SPAYSPTSPQYSPTSPSMSPTSPRYSPTSPNYSPTSPNYSP 1696
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 78/112 (69%), Gaps = 2/112 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1581 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1640
Query: 119 TQVSPAYTQVSLAYTQVS--LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S AY+ S + Y+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1641 SPTSPAYSPTSPAYSPTSPKIGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1692
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP-- 116
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SP
Sbjct: 1602 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPKI 1661
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S
Sbjct: 1662 GYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1709
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP--AYTQVSP 116
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SP Y+ SP
Sbjct: 1609 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPKIGYSPTSP 1668
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
AY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP T
Sbjct: 1669 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNIT 1713
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 5/109 (4%)
Query: 65 VSPAYTQV---SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
+SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+
Sbjct: 1570 LSPAYSPASPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1629
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSP--AYTQVSPAYTQVSSAYT 168
SPAY+ S AY+ S AY+ SPAY+ SP Y+ SPAY+ S AY+
Sbjct: 1630 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPKIGYSPTSPAYSPTSPAYS 1678
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 71/112 (63%), Gaps = 6/112 (5%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV + SP Y +SP +SPAY SPA P SPAY+P SPAY+ SPAY+ SP
Sbjct: 1550 TVQTPRSPTSPGYAPLSP--NPLSPAY---SPAS-PTSPAYSPTSPAYSPTSPAYSPTSP 1603
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
AY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1604 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1655
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYT-----QVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+
Sbjct: 1532 SPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1591
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1592 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1646
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 76/117 (64%), Gaps = 5/117 (4%)
Query: 59 SPAYTQVSPAYTQVSPA-----YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
SPAY+ SPAY+ SPA Y+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+
Sbjct: 1546 SPAYSPTSPAYSPTSPAPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1605
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP Y+ S + V
Sbjct: 1606 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSVGLSDV 1662
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 74/112 (66%), Gaps = 5/112 (4%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAY-----IPVSPAYTPVSPAYTQVSPAYTQVSP 116
++ SP Y+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SP
Sbjct: 1528 FSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAPTSPAYSPTSPAYSPTSPAYSPTSP 1587
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
AY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1588 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1639
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 75/116 (64%), Gaps = 5/116 (4%)
Query: 59 SPAYTQVSPA-----YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
SPAY+ SPA Y+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+
Sbjct: 1553 SPAYSPTSPAPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1612
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SP Y+ S + V +A T+
Sbjct: 1613 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSVGLSDVENAPTR 1668
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 16/63 (25%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVS----------------PAYTPVSP 102
SPAY+ SPAY+ SPAY+ SPAY+ SP Y P S P Y+P
Sbjct: 1621 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSVGLSDVENAPTRSPTSPQYSPTEG 1680
Query: 103 AYT 105
A++
Sbjct: 1681 AFS 1683
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y SP+Y+ SPAY+ SPAY+ SPAY P SP+Y+P SPAY+ SPAY+ SPAY
Sbjct: 1516 SPTYLAASPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1575
Query: 119 TQVSPAYTQVS--LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SPAY+ S L Y+ S AY+ SPAY+ SPAY+ SPAY+ S
Sbjct: 1576 SPTSPAYSPTSPNLGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1623
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP-- 116
SPAY+ SPAY+ SPAY+ SP+Y+ SPAY P SPAY+P SPAY+ SPAY+ SP
Sbjct: 1530 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNL 1589
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
Y+ SPAY+ S AY+ S AY+ SPAY+ SP
Sbjct: 1590 GYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1624
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 87 SPAYIPVSPAY-TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
SPAY SP Y SP Y SP+Y+ SPAY+ SPAY+ S AY+ S +Y+ SPA
Sbjct: 1501 SPAYSVTSPTYGAAASPTYLAASPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPA 1560
Query: 146 YTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ SPAY+ S AY+
Sbjct: 1561 YSPTSPAYSPTSPAYSPTSPAYS 1583
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 73 SPAYTQVSPAY-TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ---VSPAYTQVSPAYTQV 128
SPAY+ SP Y SP Y+ SP+Y+P SPAY+ SP SPAY+ SP+Y+
Sbjct: 1501 SPAYSVTSPTYGAAASPTYLAASPSYSPTSPAYSPTSP---AYSPTSPAYSPTSPSYSPT 1557
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSP--AYTQVSSAYT 168
S AY+ S AY+ SPAY+ SPAY+ SP Y+ S AY+
Sbjct: 1558 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNLGYSPTSPAYS 1599
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1620 SPVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1679
Query: 119 TQVSP--AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y S AY S AY+ SPAY+ SPAY+ SP Y+ S Y+
Sbjct: 1680 SPTSPNLGYLPTSPAYRPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPEYS 1731
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y Q Y+ SPAY+ SP Y P SP Y+P SPAY+ SPAY+ SPAY
Sbjct: 1585 SPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPAYSPTSPAYSPTSPAY 1644
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP--AYTQVSSAY 167
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SP Y S AY
Sbjct: 1645 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNLGYLPTSPAY 1695
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP--AYTQVSP 116
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SP Y SP
Sbjct: 1634 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNLGYLPTSP 1693
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
AY SPAY+ S AY+ S AY+ SP Y+ SP Y+ P
Sbjct: 1694 AYRPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPEYSPEDP 1735
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 68/111 (61%), Gaps = 4/111 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP+ +SP SP Y+ SP Y Q Y P SPAY+P SP Y+ SP Y+ SPA
Sbjct: 1574 LSPSMGMMSP----TSPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPA 1629
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1630 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1680
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 88/218 (40%), Gaps = 57/218 (26%)
Query: 7 LGLIGGTLTVEIFLLVFLLLNVLSY-ILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQ- 64
L L+ G +T + L + S+ I+I+ K +D L D A SP T
Sbjct: 1436 LDLLKG-VTENVMLGQLCPMGTGSFDIMIDDEKLRDANQNLQIMPDSALSGFTSPESTSP 1494
Query: 65 --VSPAYTQ-------VSPAYT--QVSPAYTQVSPAYI---------------------- 91
+SPA SP+Y +SP SP+++
Sbjct: 1495 DSMSPAKINSMLSPLPFSPSYAALMMSPIVNVSSPSFVTSPAVDTKALGGSFSPTIMSPQ 1554
Query: 92 -PVSPAYTPV--------------------SPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
PVSP+Y P+ SP Y+ SP Y Q Y+ SPAY+ S
Sbjct: 1555 SPVSPSYAPLSPNPLSPNPLSPSMGMMSPTSPVYSPTSPVYGQAGGVYSPASPAYSPTSP 1614
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S Y+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1615 LYSPTSPVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1652
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 79/129 (61%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP+Y+ SP Y+ SPAY+ SP Y+ SP Y P SP Y+P SP Y+ SPAY+ SP Y
Sbjct: 1619 SPSYSPTSPRYSPASPAYSPSSPKYSPTSPKYSPTSPQYSPTSPRYSPASPAYSPTSPTY 1678
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
+ SPAY+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S + + + +P
Sbjct: 1679 SPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPTSPSGANGVNGEQKPS 1738
Query: 179 RESNSRSSA 187
++ + SS
Sbjct: 1739 WQTGNTSSG 1747
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 69/107 (64%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP+Y+ SP Y+ SPAY+ SP Y P SP Y+P SP Y+ SP Y+ SPAY+
Sbjct: 1615 YSPASPSYSPTSPRYSPASPAYSPSSPKYSPTSPKYSPTSPQYSPTSPRYSPASPAYSPT 1674
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S AY+ S AY+ SPAY+ SPAY+ SPAY+ S AY+
Sbjct: 1675 SPTYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS 1721
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 39/154 (25%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAY------------------TQVSPAYTQVSP------- 88
T SP Y+ SP ++ SP Y + SP Y+ SP
Sbjct: 1540 TGGATSPGYSPSSPTWSPTSPGYVPATSPAIGGAVSPWVPQSAASPGYSPSSPMVGISSP 1599
Query: 89 --------------AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y P SP+Y+P SP Y+ SPAY+ SP Y+ SP Y+ S Y+
Sbjct: 1600 SYSPSSPRFSPSSPTYSPASPSYSPTSPRYSPASPAYSPSSPKYSPTSPKYSPTSPQYSP 1659
Query: 135 VSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
S Y+ SPAY+ SP Y+ SPAY+ S AY+
Sbjct: 1660 TSPRYSPASPAYSPTSPTYSPASPAYSPASPAYS 1693
>gi|449278228|gb|EMC86154.1| Protein 4.1 like protein, partial [Columba livia]
Length = 253
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 68/114 (59%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P +TQ+ P + ++ P + ++ + ++ P + V P + + P ++QV P ++Q+ P
Sbjct: 96 IGPTWTQIQPEWGEIHPEWGEIQLEWGEIHPEWSQVHPEWGEMDPEWSQVQPEWSQIGPT 155
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+TQ+ P ++QV L + ++ + Q+ P ++QV P ++QV P + ++ +TQ+
Sbjct: 156 WTQIQPEWSQVQLEWGEMDPEWGQIHPEWSQVQPEWSQVKPEWGEMDPVWTQMC 209
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 68/113 (60%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P ++QV P + ++ P ++QV P ++Q+ P + + P ++ V + ++ P + Q+ P
Sbjct: 124 IHPEWSQVHPEWGEMDPEWSQVQPEWSQIGPTWTQIQPEWSQVQLEWGEMDPEWGQIHPE 183
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++QV P ++QV + ++ +TQ+ P +TQ+ P ++ P ++Q+ ++Q+
Sbjct: 184 WSQVQPEWSQVKPEWGEMDPVWTQMCPEWTQMCPKQGEIQPEWSQMRPEWSQI 236
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYT-QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+ P ++QV P +TQ+ P + ++ P + ++ P + + P T + +TQ+ P +TQ+ P
Sbjct: 46 IHPEWSQVQPEWTQIQPEWGEIHPEWRGRIQPEWGEIGPTRTQIRTKWTQIGPTWTQIQP 105
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQV-------SPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ ++ P + ++ L + ++ ++QV P ++QV P ++Q+ P +TQ+ ++Q
Sbjct: 106 EWGEIHPEWGEIQLEWGEIHPEWSQVHPEWGEMDPEWSQVQPEWSQIGPTWTQIQPEWSQ 165
Query: 170 VILN 173
V L
Sbjct: 166 VQLE 169
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 67/113 (59%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V P + ++ P ++QV P ++Q+ P +TQ+ P + V + + P + Q+ P ++QV P
Sbjct: 131 VHPEWGEMDPEWSQVQPEWSQIGPTWTQIQPEWSQVQLEWGEMDPEWGQIHPEWSQVQPE 190
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++QV P + ++ +TQ+ +TQ+ P ++ P ++Q+ P ++Q+ + ++
Sbjct: 191 WSQVKPEWGEMDPVWTQMCPEWTQMCPKQGEIQPEWSQMRPEWSQIQPEWGEM 243
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 67/111 (60%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P ++QV P ++Q+ P +TQ+ P ++QV + + P + + P ++QV P ++QV P
Sbjct: 138 MDPEWSQVQPEWSQIGPTWTQIQPEWSQVQLEWGEMDPEWGQIHPEWSQVQPEWSQVKPE 197
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ ++ P +TQ+ +TQ+ ++ P ++Q+ P ++Q+ P + ++ ++
Sbjct: 198 WGEMDPVWTQMCPEWTQMCPKQGEIQPEWSQMRPEWSQIQPEWGEMDPEWS 248
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 65/110 (59%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
+ ++ P ++QV P + ++ P ++QV P + + P +T + P ++QV + ++ P + Q
Sbjct: 120 EWGEIHPEWSQVHPEWGEMDPEWSQVQPEWSQIGPTWTQIQPEWSQVQLEWGEMDPEWGQ 179
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ P ++QV ++QV + ++ P +TQ+ P +TQ+ P ++ ++Q+
Sbjct: 180 IHPEWSQVQPEWSQVKPEWGEMDPVWTQMCPEWTQMCPKQGEIQPEWSQM 229
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 59/102 (57%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P +TQ+ P ++QV + ++ P + Q+ P + V P ++ V P + ++ P +TQ+ P
Sbjct: 152 IGPTWTQIQPEWSQVQLEWGEMDPEWGQIHPEWSQVQPEWSQVKPEWGEMDPVWTQMCPE 211
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+TQ+ P ++ ++Q+ ++Q+ P + ++ P ++ + P
Sbjct: 212 WTQMCPKQGEIQPEWSQMRPEWSQIQPEWGEMDPEWSLIQPE 253
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V P ++QV P + ++ +T++ TQ P + P + + P ++QV P +TQ+ P
Sbjct: 4 VQPEWSQVQPEWREMDLEWTRIHTTRTQTQPEWSQTQPEWGEIHPEWSQVQPEWTQIQPE 63
Query: 118 YTQ--------VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + + P + ++ TQ+ +TQ+ P +TQ+ P + ++ P + ++ + +
Sbjct: 64 WGEIHPEWRGRIQPEWGEIGPTRTQIRTKWTQIGPTWTQIQPEWGEIHPEWGEIQLEWGE 123
Query: 170 V 170
+
Sbjct: 124 I 124
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++QV P ++QV P + ++ L +T++ TQ P ++Q P + ++ P ++QV +TQ+
Sbjct: 1 WSQVQPEWSQVQPEWREMDLEWTRIHTTRTQTQPEWSQTQPEWGEIHPEWSQVQPEWTQI 60
>gi|449277999|gb|EMC85992.1| DNA-directed RNA polymerase II subunit RPB1, partial [Columba
livia]
Length = 152
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSP-------AYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
+ P Y ++ P Y ++ P +++V P Y +V P Y+ + P Y V P Y +V P
Sbjct: 8 KIDPKYAKIDPKYGKIDPKFSKVGPRNVKVGLKYVKVGPKYMKIDPKYVKVDPKYIKVDP 67
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Y +V P Y ++ P ++ Y V Y +V P Y ++ P Y +V P Y ++ + Y +
Sbjct: 68 KYVKVDPKYVKIDPRNVKIDPKYVNVGRKYVKVDPKYVKIDPKYVKVDPKYIKIGTKYVK 127
Query: 170 V 170
V
Sbjct: 128 V 128
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
V P Y ++ P Y +V P Y +V P Y +V P Y+ + P + P Y V Y +V P
Sbjct: 43 KVGPKYMKIDPKYVKVDPKYIKVDPKYVKVDPKYVKIDPRNVKIDPKYVNVGRKYVKVDP 102
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
Y ++ P Y +V Y ++ Y +V P Y ++ P Y +V P Y ++
Sbjct: 103 KYVKIDPKYVKVDPKYIKIGTKYVKVGPKYVKIDPKYDKVGPKYVKID 150
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 57 TVSPAYTQVSPAYTQVSP-------AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
+ P Y ++ P +++V P Y +V P Y ++ P Y+ V P Y V P Y +V P
Sbjct: 15 KIDPKYGKIDPKFSKVGPRNVKVGLKYVKVGPKYMKIDPKYVKVDPKYIKVDPKYVKVDP 74
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Y ++ P ++ P Y V Y +V Y ++ P Y +V P Y ++ Y +V Y +
Sbjct: 75 KYVKIDPRNVKIDPKYVNVGRKYVKVDPKYVKIDPKYVKVDPKYIKIGTKYVKVGPKYVK 134
Query: 170 V 170
+
Sbjct: 135 I 135
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y +V P Y ++ P Y +V P Y +V P Y+ V P Y + P ++ P Y V Y +
Sbjct: 40 KYVKVGPKYMKIDPKYVKVDPKYIKVDPKYVKVDPKYVKIDPRNVKIDPKYVNVGRKYVK 99
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V P Y ++ Y +V Y ++ Y +V P Y ++ P Y +V Y ++
Sbjct: 100 VDPKYVKIDPKYVKVDPKYIKIGTKYVKVGPKYVKIDPKYDKVGPKYVKI 149
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+ P Y +V P Y +V P Y +V P Y ++ P + + P Y V Y +V P Y ++ P
Sbjct: 50 KIDPKYVKVDPKYIKVDPKYVKVDPKYVKIDPRNVKIDPKYVNVGRKYVKVDPKYVKIDP 109
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y +V P Y ++ Y +V Y ++ P Y +V P Y ++ P
Sbjct: 110 KYVKVDPKYIKIGTKYVKVGPKYVKIDPKYDKVGPKYVKIDP 151
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
V P +V Y +V P Y ++ P Y +V P YI V P Y V P Y ++ P ++ P
Sbjct: 29 KVGPRNVKVGLKYVKVGPKYMKIDPKYVKVDPKYIKVDPKYVKVDPKYVKIDPRNVKIDP 88
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y V Y +V Y ++ Y +V P Y ++ Y +V P Y ++ Y +V
Sbjct: 89 KYVNVGRKYVKVDPKYVKIDPKYVKVDPKYIKIGTKYVKVGPKYVKIDPKYDKV 142
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
++ P Y ++ P Y ++ P Y ++ P + V P V Y +V P Y ++ P Y +V P
Sbjct: 1 KIDPKYGKIDPKYAKIDPKYGKIDPKFSKVGPRNVKVGLKYVKVGPKYMKIDPKYVKVDP 60
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y +V Y +V Y ++ P ++ P Y V Y +V Y ++
Sbjct: 61 KYIKVDPKYVKVDPKYVKIDPRNVKIDPKYVNVGRKYVKVDPKYVKI 107
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%)
Query: 85 QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
++ P Y + P Y + P Y ++ P +++V P +V Y +V Y ++ Y +V P
Sbjct: 1 KIDPKYGKIDPKYAKIDPKYGKIDPKFSKVGPRNVKVGLKYVKVGPKYMKIDPKYVKVDP 60
Query: 145 AYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHEWVWMS 199
Y +V P Y +V P Y ++ ++ + GR+ Y ++V +
Sbjct: 61 KYIKVDPKYVKVDPKYVKIDPRNVKIDPKYVNVGRKYVKVDPKYVKIDPKYVKVD 115
>gi|124505021|ref|XP_001351252.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7]
gi|3758846|emb|CAB11131.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7]
Length = 2457
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 2284 MSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2343
Query: 118 YTQVSPAYTQVSLAYTQVS----LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ S ++ Y+ SP ++ SPAY+ SP Y +
Sbjct: 2344 YSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDK 2392
Score = 93.2 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+ Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 2277 VNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2336
Query: 118 YTQVSPAYTQVSLAYTQVS-LAYTQVSPAYTQ---VSPAYTQVSPAYTQVSSAYTQV-IL 172
Y+ SP Y+ S Y+ S +A SP Y+ SP ++ SPAY+ S Y + ++
Sbjct: 2337 YSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKSGVV 2396
Query: 173 NKIRP 177
N +P
Sbjct: 2397 NAHQP 2401
Score = 87.0 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 29/139 (20%)
Query: 59 SPAYTQVSPAYT------------------QVSPAYTQVSPAYTQVSPAYIPVSPAYTPV 100
SP+Y+ SP Y V+ Y +SP Y+ SP Y P SP Y+P
Sbjct: 2246 SPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPT 2305
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA-------- 152
SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP
Sbjct: 2306 SPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPN 2365
Query: 153 ---YTQVSPAYTQVSSAYT 168
Y+ SP ++ S AY+
Sbjct: 2366 YSPYSITSPKFSPTSPAYS 2384
Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 27/78 (34%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-----------YTQVSPAYIPVSPAYT--------- 98
SP Y+ SP Y+ SP Y+ SP Y+ SP + P SPAY+
Sbjct: 2334 SPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKS 2393
Query: 99 -------PVSPAYTQVSP 109
P+SPAY SP
Sbjct: 2394 GVVNAHQPMSPAYILQSP 2411
>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
1, partial [Hydra magnipapillata]
Length = 1595
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 67/110 (60%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SPAY+ SPAY+ SP Y P SPAY+P SP Y+ SP Y+ SP Y
Sbjct: 1410 SPTYSPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPAYSPTSPKYSPTSPKYSPTSPIY 1469
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SPAY+ S Y+ S Y+ SP Y+ +P Y+ SP Y+ S Y+
Sbjct: 1470 SPTSPAYSPTSTGYSPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYS 1519
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 65/107 (60%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP Y+ SPAY+ SPAY+ SPAY P SP Y+P SPAY+ SP Y+ SP Y+
Sbjct: 1406 YSPTSPTYSPTSPAYSPTSPAYSPTSPAYSPTSPVYSPTSPAYSPTSPKYSPTSPKYSPT 1465
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S AY+ S Y+ SP Y+ SP Y+ +P Y+ S Y+
Sbjct: 1466 SPIYSPTSPAYSPTSTGYSPTSPEYSPSSPKYSPTTPQYSPTSPKYS 1512
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SPAY+ SP Y+ SPAY+ SP Y P SP Y+P SP Y+ SPAY+ S Y
Sbjct: 1424 SPAYSPTSPAYSPTSPVYSPTSPAYSPTSPKYSPTSPKYSPTSPIYSPTSPAYSPTSTGY 1483
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ SP Y+ S Y+ + Y+ SP Y+ SP Y+ +P V S
Sbjct: 1484 SPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYSPSTPTDKSVGS 1530
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 43 EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
+D +S +++ Y SP+ +SP+Y+ SPA+ SPA + SP Y P SP Y+P SP
Sbjct: 1128 QDSMSLGSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSP 1187
Query: 103 AYTQVSPAYTQVSPA 117
Y+ SP+Y+ SP
Sbjct: 1188 GYSPTSPSYSPTSPG 1202
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 21/100 (21%)
Query: 90 YIPVSPAYTPVSPAYTQVSPA---------------------YTQVSPAYTQVSPAYTQV 128
Y P SP Y+P SP Y+ SP+ Y+ SP Y+ SPAY+
Sbjct: 1364 YSPTSPKYSPTSPKYSPTSPSYSPSSPSYSPSSPNYSPTSPTYSPTSPTYSPTSPAYSPT 1423
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
S AY+ S AY+ SP Y+ SPAY+ SP Y+ S Y+
Sbjct: 1424 SPAYSPTSPAYSPTSPVYSPTSPAYSPTSPKYSPTSPKYS 1463
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SPA + SP Y+ SP Y+ SP Y+ SP+Y P SP Y+P
Sbjct: 1165 SPAMSPSSPGYSPTSPLYSPTSPGYSPTSPSYSPTSPGYSP 1205
>gi|343476011|emb|CCD12766.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 411
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 74/117 (63%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T +SPA + +SPA + +SPA + +SPA + +SP +SPA + +SPA + +SPA +
Sbjct: 120 TRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSN 179
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+SPA + +SP + +S A + +S A + +SPA + +SP + +SP + +S A + +
Sbjct: 180 LSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPTRSNLSPARSNL 236
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 71/111 (63%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T +SP + +SP + +SPA + +SPA + +SPA +SPA + +SP + +SPA +
Sbjct: 106 TRSNLSPTRSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSN 165
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+SPA + +SPA + +S A + +S + +SPA + +SPA + +SPA + +S
Sbjct: 166 LSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLS 216
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 71/111 (63%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T +SP + +SPA + +SPA + +SPA + +SPA +SP + +SPA + +SPA +
Sbjct: 113 TRSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSN 172
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+SPA + +SPA + +S + +S A + +SPA + +SPA + +SP + +S
Sbjct: 173 LSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPTRSNLS 223
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 71/111 (63%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T +SPA + +SPA + +SPA + +SPA + +SP +SPA + +SPA + +SPA +
Sbjct: 155 TRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSN 214
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+SP + +SP + +S A + +S + +SPA + +SPA + +SPA + +S
Sbjct: 215 LSPTRSNLSPTRSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLS 265
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 73/117 (62%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T +SPA + +SPA + +SPA + +SP + +SP +SP + +SP + +SPA +
Sbjct: 71 TRSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPTRSNLSPTRSNLSPTRSNLSPARSN 130
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+SPA + +SPA + +S A + +S + +SPA + +SPA + +SPA + +S A + +
Sbjct: 131 LSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNL 187
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 73/117 (62%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T +SP + +SP + +SP + +SPA + +SPA +SPA + +SPA + +SP +
Sbjct: 99 TRSNLSPTRSNLSPTRSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSN 158
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+SPA + +SPA + +S A + +S A + +SP + +SPA + +SPA + +S A + +
Sbjct: 159 LSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNL 215
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 70/108 (64%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SPA + +SPA + +SPA + +SP + +SPA +SPA + +SPA + +SPA + +SP
Sbjct: 130 NLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSP 189
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ +SPA + +S A + +S A + +SP + +SP + +SPA + +S
Sbjct: 190 TRSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPTRSNLSPARSNLS 237
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 76/128 (59%)
Query: 43 EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
E +S + + +SP + +SPA + +SPA + +SPA + +SP +SP + +SP
Sbjct: 53 ETNMSVAKGSSARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPTRSNLSP 112
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ +SP + +SPA + +SPA + +S A + +S A + +SP + +SPA + +SPA +
Sbjct: 113 TRSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSN 172
Query: 163 VSSAYTQV 170
+S A + +
Sbjct: 173 LSPARSNL 180
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 72/114 (63%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SPA + +SPA + +SP + +SPA + +SPA +SPA + +SPA + +SP + +SP
Sbjct: 137 NLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSP 196
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A + +SPA + +S A + +S + +SP + +SPA + +SP + +S A + +
Sbjct: 197 ARSNLSPARSNLSPARSNLSPTRSNLSPTRSNLSPARSNLSPTRSNLSPARSNL 250
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 72/114 (63%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SPA + +SP + +SPA + +SPA + +SPA +SPA + +SP + +SPA + +SP
Sbjct: 144 NLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSP 203
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A + +SPA + +S + +S + +SPA + +SP + +SPA + +S A + +
Sbjct: 204 ARSNLSPARSNLSPTRSNLSPTRSNLSPARSNLSPTRSNLSPARSNLSPARSNL 257
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 72/114 (63%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SP + +SPA + +SPA + +SPA + +SPA +SP + +SPA + +SPA + +SP
Sbjct: 151 NLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSP 210
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A + +SP + +S + +S A + +SP + +SPA + +SPA + +S A + +
Sbjct: 211 ARSNLSPTRSNLSPTRSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNL 264
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 72/114 (63%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SPA + +SPA + +SPA + +SP + +SPA +SPA + +SPA + +SP + +SP
Sbjct: 165 NLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPTRSNLSP 224
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ +SPA + +S + +S A + +SPA + +SPA + +SP + +S A + +
Sbjct: 225 TRSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNL 278
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 69/108 (63%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SPA + +SPA + +SP + +SP + +SP +SP + +SPA + +SPA + +SP
Sbjct: 81 NLSPARSNLSPARSNLSPTRSNLSPTRSNLSPTRSNLSPTRSNLSPARSNLSPARSNLSP 140
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
A + +SPA + +S + +S A + +SPA + +SPA + +SPA + +S
Sbjct: 141 ARSNLSPARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLS 188
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 71/114 (62%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SPA + +SP + +SP + +SP + +SP +SPA + +SPA + +SPA + +SP
Sbjct: 88 NLSPARSNLSPTRSNLSPTRSNLSPTRSNLSPTRSNLSPARSNLSPARSNLSPARSNLSP 147
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A + +SP + +S A + +S A + +SPA + +SPA + +SP + +S A + +
Sbjct: 148 ARSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNL 201
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 71/114 (62%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+SP + +SP + +SP + +SP + +SPA +SPA + +SPA + +SPA + +SP
Sbjct: 95 NLSPTRSNLSPTRSNLSPTRSNLSPTRSNLSPARSNLSPARSNLSPARSNLSPARSNLSP 154
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ +SPA + +S A + +S A + +SPA + +SP + +SPA + +S A + +
Sbjct: 155 TRSNLSPARSNLSPARSNLSPARSNLSPARSNLSPTRSNLSPARSNLSPARSNL 208
>gi|133328|sp|P14248.1|RPB1_PLAFD RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|9943|emb|CAA34560.1| unnamed protein product [Plasmodium falciparum]
Length = 2452
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+ Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 2279 VNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2338
Query: 118 YTQVSPAYTQVSLAYTQVS----LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ S ++ Y+ SP ++ SPAY+ SP Y +
Sbjct: 2339 YSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDK 2387
Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA----YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
SP+Y+ SP Y + Y+ SP V+ Y +SP Y+ SP Y+ SP Y+
Sbjct: 2248 SPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPT 2307
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP ++S
Sbjct: 2308 SPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIAS 2358
Score = 73.9 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 55 VYTVSPAYTQVSPA----YTQVSPAYTQVSPAYTQVSPAYIPVSPA----YTPVSPAYTQ 106
+Y+ +P SP + SP+Y+ SP Y + Y P SP V+ Y
Sbjct: 2226 IYSPNPMLDIFSPKPQINHNIYSPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNV 2285
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S
Sbjct: 2286 MSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2345
Query: 167 YT 168
Y+
Sbjct: 2346 YS 2347
Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 27/78 (34%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-----------YTQVSPAYIPVSPAYT--------- 98
SP Y+ SP Y+ SP Y+ SP Y+ SP + P SPAY+
Sbjct: 2329 SPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKS 2388
Query: 99 -------PVSPAYTQVSP 109
P+SPAY SP
Sbjct: 2389 GVVNAHQPMSPAYILQSP 2406
>gi|221055475|ref|XP_002258876.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808946|emb|CAQ39649.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi strain
H]
Length = 2353
Score = 89.4 bits (220), Expect = 9e-16, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SPAY SP Y+ SP Y+ SP Y SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 2187 LSPAYAVTSPKYSPTSPKYSPTSPKYMPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQ 2246
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
Y+ SP S + Y SP ++ SPAY+ SP Y Q S+A
Sbjct: 2247 YSPTSPVPNSPSSPHYS---PYAIASPKFSPTSPAYSISSPVYDQSSNA 2292
>gi|331229132|ref|XP_003327232.1| DNA-directed RNA polymerase [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 105
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P +T P +T P +T P +T P + P P +TP P +T P +T P +T
Sbjct: 10 PGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFT 69
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P +TQ +T +TQ P +T +P
Sbjct: 70 PCKPGFTQCKPGFTPCKPGFTQCKPGFTPCNP 101
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
P +T P +T P +T P + P P +TP P +T P +T P +T P +T
Sbjct: 10 PGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFT 69
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+TQ +T P +TQ P +T +P
Sbjct: 70 PCKPGFTQCKPGFTPCKPGFTQCKPGFTPCNP 101
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
P +T P +T P + P P +TP P +T P +T P +T P +T +T
Sbjct: 10 PGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFT 69
Query: 134 QVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+TQ P +T P +TQ P +T +
Sbjct: 70 PCKPGFTQCKPGFTPCKPGFTQCKPGFTPCN 100
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%)
Query: 81 PAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT 140
P +T P + P P +TP P +T P +T P +T P +T +T +T
Sbjct: 10 PGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFTPCKPGFT 69
Query: 141 QVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
P +TQ P +T P +TQ +T
Sbjct: 70 PCKPGFTQCKPGFTPCKPGFTQCKPGFTPC 99
>gi|156096993|ref|XP_001614530.1| DNA-directed RNA polymerase II largest subunit [Plasmodium vivax
Sal-1]
gi|148803404|gb|EDL44803.1| DNA-directed RNA polymerase II largest subunit, putative [Plasmodium
vivax]
Length = 2379
Score = 87.8 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
++ VSP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 2217 HSVVSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPS 2276
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SP S + Y SP ++ SPAY+ SP Y Q +A ++
Sbjct: 2277 SPVPNNPSSPHYS---PYAIASPKFSPTSPAYSISSPVYDQSGNARSK 2321
Score = 76.6 bits (187), Expect = 6e-12, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 63/149 (42%), Gaps = 38/149 (25%)
Query: 59 SPAYTQVSPAYTQVSPA--------------YTQVSPA-------------YTQVSPAYI 91
SP+Y+ SP Y +PA Y+ SP ++ VSP Y
Sbjct: 2166 SPSYSPTSPTYHLTNPASGGGSSGLNGTKAYYSPTSPTNQLDEVNPNMMKYHSVVSPVYS 2225
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA------ 145
SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP
Sbjct: 2226 VTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPVPNNPSS 2285
Query: 146 -----YTQVSPAYTQVSPAYTQVSSAYTQ 169
Y SP ++ SPAY+ S Y Q
Sbjct: 2286 PHYSPYAIASPKFSPTSPAYSISSPVYDQ 2314
>gi|452819030|gb|EME26138.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 1275
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 77/137 (56%), Gaps = 27/137 (19%)
Query: 59 SPAYTQVSPA------YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----- 107
SPAY+ SPA Y+ SPAY+ SPAY SPAY P SP Y+P SPA ++V
Sbjct: 1134 SPAYSPTSPANGLSARYSPTSPAYSPTSPAYMPRSPAYSPTSPGYSPTSPAXSRVAESGH 1193
Query: 108 ----------------SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SPAY+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SP
Sbjct: 1194 HNGGTQGGEAWIYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSP 1253
Query: 152 AYTQVSPAYTQVSSAYT 168
AY+ SPAY+ S AY+
Sbjct: 1254 AYSPKSPAYSPKSPAYS 1270
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 71/125 (56%), Gaps = 21/125 (16%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA--------------------- 96
+S Y+ SPAY+ SPAY SPAY+ SP Y P SPA
Sbjct: 1146 LSARYSPTSPAYSPTSPAYMPRSPAYSPTSPGYSPTSPAXSRVAESGHHNGGTQGGEAWI 1205
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
Y+P SPAY+ SPAY+ SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+
Sbjct: 1206 YSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPK 1265
Query: 157 SPAYT 161
SPAY+
Sbjct: 1266 SPAYS 1270
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 76/134 (56%), Gaps = 27/134 (20%)
Query: 62 YTQVSPAYTQVSPA------YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV- 114
Y+ SPAY+ SPA Y+ SPAY+ SPAY+P SPAY+P SP Y+ SPA ++V
Sbjct: 1130 YSPSSPAYSPTSPANGLSARYSPTSPAYSPTSPAYMPRSPAYSPTSPGYSPTSPAXSRVA 1189
Query: 115 --------------------SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
SPAY+ SPAY+ S AY+ S AY+ SPAY+ SPAY+
Sbjct: 1190 ESGHHNGGTQGGEAWIYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYS 1249
Query: 155 QVSPAYTQVSSAYT 168
SPAY+ S AY+
Sbjct: 1250 PKSPAYSPKSPAYS 1263
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 47 STDEDEATVYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
T EA +Y+ SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+
Sbjct: 1197 GTQGGEAWIYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYS 1256
Query: 106 QVSPAYTQVSPAYT 119
SPAY+ SPAY+
Sbjct: 1257 PKSPAYSPKSPAYS 1270
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 12/114 (10%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA------YTPVSPAYTQVSPA--YTQVSP 116
+SP Y+ SP S + SPAY P SP Y+P SPAY+ SP Y+ SP
Sbjct: 1079 ISPLYSPSSPMXEHGS---SPTSPAYSPTSPGXXSGQRYSPTSPAYSPTSPGIRYSPSSP 1135
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
AY+ SPA +S Y+ S AY+ SPAY SPAY+ SP Y+ S A ++V
Sbjct: 1136 AYSPTSPA-NGLSARYSPTSPAYSPTSPAYMPRSPAYSPTSPGYSPTSPAXSRV 1188
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P S
Sbjct: 1231 SPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPHS 1273
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 67/110 (60%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP+Y+ SP YT SP Y+ SP Y P SPAY+P SP Y+ SP Y+ SP Y
Sbjct: 1756 SPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPTSPRYSPASPKY 1815
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP+Y+ S AY+ S Y+ SP+Y+ SP Y+ SP Y+ + Y+
Sbjct: 1816 SPTSPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPAPTGYS 1865
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 66/108 (61%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
AY+ SP Y+ SP+Y+ SP YT SP Y P SP Y+P SPAY+ SP Y+ SP Y+
Sbjct: 1751 AYSPSSPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPTSPRYSP 1810
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S +Y+ S AY+ SP Y+ SP+Y+ SP Y+ S Y+
Sbjct: 1811 ASPKYSPTSPSYSPASPAYSPSSPNYSPTSPSYSPASPKYSPTSPTYS 1858
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP Y+ SP Y+ SP Y+ SP+Y P SPAY+P SP Y+ SP+Y+ SP Y
Sbjct: 1791 SPAYSPSSPKYSPTSPRYSPASPKYSPTSPSYSPASPAYSPSSPNYSPTSPSYSPASPKY 1850
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
+ SP Y+ Y+ S +Y+ SP Y
Sbjct: 1851 SPTSPTYSPAPTGYSPTSPSYSPTSPTY 1878
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 59 SPAYTQVSPAYTQ---VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP Q +PA + SP Y+ SPAY+ SP Y P SP Y+P SP Y+ SP+Y+ S
Sbjct: 1767 SPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPTSPRYSPASPKYSPTSPSYSPAS 1826
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
PAY+ SP Y+ S +Y+ S Y+ SP Y+ Y+ SP+Y+ S Y
Sbjct: 1827 PAYSPSSPNYSPTSPSYSPASPKYSPTSPTYSPAPTGYSPTSPSYSPTSPTY 1878
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SPAY+ SP Y+ SP+Y+ SP YT S Y+ S Y+ SPAY+ SP Y+ SP
Sbjct: 1748 RSPAYSPSSPKYSPTSPSYSPGSPQYTPASPKYSPTSPTYSPTSPAYSPSSPKYSPTSPR 1807
Query: 160 YTQVSSAYT 168
Y+ S Y+
Sbjct: 1808 YSPASPKYS 1816
>gi|331229166|ref|XP_003327249.1| hypothetical protein PGTG_09798 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 147
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 24/131 (18%)
Query: 58 VSPAYTQVSPAYTQVSP------------AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
P +T P +T +P +TQ P +T P + P P +TP P +T
Sbjct: 9 CKPGFTPCKPGFTPCNPELHHPGFTPCKSGFTQCKPGFTPCKPGFTPCKPGFTPCKPGFT 68
Query: 106 QVSPAYTQVSP------------AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
Q P +T +P +T P +TQ +T +T P +T P +
Sbjct: 69 QCKPGFTPCNPELHHPGFTPCKSGFTPCKPGFTQCKPGFTPCKSGFTPCKPGFTPCKPGF 128
Query: 154 TQVSPAYTQVS 164
T P +T +
Sbjct: 129 TPCKPGFTPCN 139
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS-----PAYTQVSPAYTQVS 115
+TQ P +T P +T P +T P + P +TP + P +T +T
Sbjct: 38 GFTQCKPGFTPCKPGFTPCKPGFTPCKPGFTQCKPGFTPCNPELHHPGFTPCKSGFTPCK 97
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P +TQ P +T +T +T P +T P +T +P
Sbjct: 98 PGFTQCKPGFTPCKSGFTPCKPGFTPCKPGFTPCKPGFTPCNP 140
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP-----AYTPVSPAYTQVSPAYT 112
P +T P +T P +T P +TQ P + P +P +TP +T P +T
Sbjct: 42 CKPGFTPCKPGFTPCKPGFTPCKPGFTQCKPGFTPCNPELHHPGFTPCKSGFTPCKPGFT 101
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
Q P +T +T +T +T P +T +P
Sbjct: 102 QCKPGFTPCKSGFTPCKPGFTPCKPGFTPCKPGFTPCNP 140
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 26/123 (21%)
Query: 82 AYTQVSPAYIPVSPAYTPVSP------------AYTQVSPAYTQVSPAYTQVSPAYTQVS 129
+TQ P + P P +TP +P +TQ P +T P +T P +T
Sbjct: 5 GFTQCKPGFTPCKPGFTPCNPELHHPGFTPCKSGFTQCKPGFTPCKPGFTPCKPGFTPCK 64
Query: 130 LAYTQVSLAYTQVSP------------AYTQVSPAYTQVSPAYTQVSSAYTQVI--LNKI 175
+TQ +T +P +T P +TQ P +T S +T
Sbjct: 65 PGFTQCKPGFTPCNPELHHPGFTPCKSGFTPCKPGFTQCKPGFTPCKSGFTPCKPGFTPC 124
Query: 176 RPG 178
+PG
Sbjct: 125 KPG 127
>gi|449266668|gb|EMC77695.1| hypothetical protein A306_15074, partial [Columba livia]
Length = 168
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + + P Q+ P Q+ P Q+ P Q+ P I + P + P Q+ P
Sbjct: 5 DPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKM 64
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Q+ P Q+ P Q+ Q+S Q+ P Q+ P Q+ P Q+S Q+
Sbjct: 65 EQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQI 123
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + + P Q+ P Q+ P Q+ P Q+ P I + P + P Q+ P
Sbjct: 19 DPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKM 78
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Q+ P Q+SP Q+ Q+ Q+ P Q+SP Q+ P Q+ Q+
Sbjct: 79 EQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQI 137
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + + P Q+ P Q+ P Q+ P Q+ P I + P + P Q+SP
Sbjct: 33 DPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIWPKMVQISPKM 92
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Q+ P Q+ P Q+ Q+S Q+ P Q+ P Q+ P Q+S Q+
Sbjct: 93 EQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQI 151
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + + P Q+ P Q+ P Q+ P Q+ P + +SP + P Q+ P
Sbjct: 47 DPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKM 106
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Q+ P Q+SP Q+ Q+ Q+ P Q+SP Q+ P Q+ Q+
Sbjct: 107 EQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQI 165
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ + P Q+ P Q+ P Q+ P Q+ P + P + P Q+ P Q
Sbjct: 14 KMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQ 73
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ P Q+ P Q+S Q+ Q+ P Q+ P Q+SP Q+ Q+
Sbjct: 74 IDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQI 130
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ + P Q+ P Q+ P Q+ P Q+ P + P +SP Q+ P Q
Sbjct: 42 KMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQ 101
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ P Q+ P Q+S Q+ Q+ P Q+ P Q+SP Q+ Q+
Sbjct: 102 IDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQI 158
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ + P Q+ P Q+ P Q+ P Q+ P + P + P Q+ P Q
Sbjct: 28 KMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIGPKMIQIDPKMEQIWPKMVQ 87
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+SP Q+ P Q+ Q+ Q+SP Q+ P Q+ P Q+ Q+
Sbjct: 88 ISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQI 144
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + + P Q+ P Q+ P Q+SP Q+ P I + P + P Q+SP
Sbjct: 61 DPKMEQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQIWPKMVQISPKM 120
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Q+ P Q+ P Q+ Q+S Q+ P Q+ P Q+ P
Sbjct: 121 EQIGPKMIQIDPKMEQIWPKMVQISPKMEQIGPKMIQIDPKMEQIGPK 168
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 62/110 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1617 SPGYSPTSPRYSPTSPGYSPTSPVYSPTSPKYSPTSPKYSPTSPRYSPTSPKYSPTSPRY 1676
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1677 SPTSPTYSPTSPHYSPTSPKYSPTSPRYSPTSPKYSPTSPRYSPTSPQYS 1726
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 51 DEATVYTVSPAYT--QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
D SPAY+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ S
Sbjct: 1600 DRTRASATSPAYSPGMTSPGYSPTSPRYSPTSPGYSPTSPVYSPTSPKYSPTSPKYSPTS 1659
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1660 PRYSPTSPKYSPTSPRYSPTSPTYSPTSPHYSPTSPKYSPTSPRYSPTSPKYSPTSPRYS 1719
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 61/108 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1624 SPRYSPTSPGYSPTSPVYSPTSPKYSPTSPKYSPTSPRYSPTSPKYSPTSPRYSPTSPTY 1683
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1684 SPTSPHYSPTSPKYSPTSPRYSPTSPKYSPTSPRYSPTSPQYSPTSPA 1731
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1645 SPKYSPTSPKYSPTSPRYSPTSPKYSPTSPRYSPTSPTYSPTSPHYSPTSPKYSPTSPRY 1704
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPA----YTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S Y+ SPA + SP Y+ SPAY S Y+
Sbjct: 1705 SPTSPKYSPTSPRYSPTSPQYSPTSPARPAGMSPASPRYSPTSPAYAPKSPQYS 1758
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1659 SPRYSPTSPKYSPTSPRYSPTSPTYSPTSPHYSPTSPKYSPTSPRYSPTSPKYSPTSPRY 1718
Query: 119 TQVSPAYTQVSLA----YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNK 174
+ SP Y+ S A + S Y+ SPAY SP Y+ SP Y+ S ++ N
Sbjct: 1719 SPTSPQYSPTSPARPAGMSPASPRYSPTSPAYAPKSPQYSPASPQYSPTSPQWSG---NT 1775
Query: 175 IRPGRESNSRSSAYEA 190
+ + NS S+ Y++
Sbjct: 1776 SQGSTQGNSGSTQYKS 1791
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 64 QVSPAYTQVSPAYTQVSPAYT--QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Q SP + + + T SPAY+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 1594 QQSPWFDRTRASAT--SPAYSPGMTSPGYSPTSPRYSPTSPGYSPTSPVYSPTSPKYSPT 1651
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1652 SPKYSPTSPRYSPTSPKYSPTSPRYSPTSPTYSPTSPHYSPTSPKYS 1698
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY-TQVSPAYTQVSPA 117
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA +SPA SP
Sbjct: 1687 SPHYSPTSPKYSPTSPRYSPTSPKYSPTSPRYSPTSPQYSPTSPARPAGMSPA----SPR 1742
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYT-QVSPAYTQVSPAYTQVSSA 166
Y+ SPAY S Y+ S Y+ SP ++ S TQ + TQ S+
Sbjct: 1743 YSPTSPAYAPKSPQYSPASPQYSPTSPQWSGNTSQGSTQGNSGSTQYKSS 1792
>gi|294872622|ref|XP_002766339.1| Tropomyosin, putative [Perkinsus marinus ATCC 50983]
gi|239867144|gb|EEQ99056.1| Tropomyosin, putative [Perkinsus marinus ATCC 50983]
Length = 151
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 44 DYL-----STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT 98
DYL S D+ + + +S + Q+S + Q+S + Q+S + Q+S + +S +
Sbjct: 6 DYLIAXXKSLDQIKKNLDQISESLDQISKSLDQISKSLDQISESLDQISKSLDQISESLD 65
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+S + Q+S + Q+S + Q+S + Q+ + Q+S + Q+S QVS Q+S
Sbjct: 66 QISKSLDQISKSLDQISKSLDQISKSLDQICKSLDQISKSLDQISKNLDQVSKNLDQISK 125
Query: 159 AYTQVSSAYTQ--VILNKIRPGR 179
+ Q S + Q L+++ G+
Sbjct: 126 SLDQFSKSLDQFSESLDQLNDGK 148
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
++ +S + Q+S + Q+S + Q+S + Q+S + +S + +S + Q+S + Q
Sbjct: 28 SLDQISKSLDQISKSLDQISESLDQISKSLDQISESLDQISKSLDQISKSLDQISKSLDQ 87
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
+S + Q+ + Q+S + Q+S QVS Q+S + Q S + Q S + Q+
Sbjct: 88 ISKSLDQICKSLDQISKSLDQISKNLDQVSKNLDQISKSLDQFSKSLDQFSESLDQLNDG 147
Query: 174 KIR 176
KI
Sbjct: 148 KIN 150
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
++ +S + Q+S + Q+S + Q+S + Q+S + +S + +S + Q+S +
Sbjct: 34 KSLDQISKSLDQISESLDQISKSLDQISESLDQISKSLDQISKSLDQISKSLDQISKSLD 93
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Q+ + Q+S + Q+S QVS Q+S + Q S + Q S + Q++ V
Sbjct: 94 QICKSLDQISKSLDQISKNLDQVSKNLDQISKSLDQFSKSLDQFSESLDQLNDGKINV 151
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQVSPA 117
SPAY+ SP SP Y+ SP Y+ SPA+ P SP+Y+P SPA + SP Y+ SP
Sbjct: 1649 SPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQ 1708
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV--SSAYTQVILNKI 175
++ SP Y+ S AY+ S Y+ SPAY+ SPAY+ SPAY + Q +
Sbjct: 1709 FSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYGGAAPNGGTAQQQNGQA 1768
Query: 176 RPG 178
RPG
Sbjct: 1769 RPG 1771
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA-YTQVSPAYTQ 120
Y+ SPAY+ SP SP Y+ SP Y P SPA++P SP+Y+ SPA + SP Y+
Sbjct: 1645 YSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSP 1704
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP ++ S Y+ S AY+ SP Y+ SPAY+ SPAY+ S AY
Sbjct: 1705 TSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAY 1751
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y + A + SP Y+ SPAY+ SP SP Y P SP Y+P SPA++ SP+Y+ S
Sbjct: 1633 YGGAGAGNRASP-YSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTS 1691
Query: 116 PA-YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
PA + SP Y+ S ++ S Y+ SPAY+ SP Y+ SPAY+ S AY+
Sbjct: 1692 PAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYS 1745
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SPA++ SP+Y+ SPA + SP Y P SP ++P SP Y+ SPAY+ SP
Sbjct: 1670 SPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQ 1729
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
Y+ SPAY+ S AY+ S AY +P Q P +
Sbjct: 1730 YSPTSPAYSPTSPAYSPTSPAYGGAAPNGGTAQQQNGQARPGWGNTGG 1777
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-------------------VSPAYTP 99
SPAY+ SP Y+ SP ++ SP+++ SP Y P SPAY+P
Sbjct: 1595 SPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSP 1654
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA-YTQVSPAYTQVSPAYTQVSP 158
SP SP Y+ SP Y+ SPA++ S +Y+ S A + SP Y+ SP ++ SP
Sbjct: 1655 TSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSP 1714
Query: 159 AYTQVSSAYT 168
Y+ S AY+
Sbjct: 1715 TYSPASPAYS 1724
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 65/167 (38%), Gaps = 57/167 (34%)
Query: 56 YTVSPAYTQVSPA-YTQVSPA-------YTQVSPAYTQVSP----------------AYI 91
Y SP + +SPA Y+ SPA + SPAY+ SP Y
Sbjct: 1533 YGQSPMHGGMSPAGYSPSSPAGYSPTSPFAVTSPAYSPTSPFAGAAAGAASPWVGRGGYG 1592
Query: 92 PVSPAYTPVSPAYTQVSPA---------------------------------YTQVSPAY 118
SPAY+P SP Y+ SP Y+ SPAY
Sbjct: 1593 ATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAY 1652
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ SP S Y+ S Y+ SPA++ SP+Y+ SPA Q +S
Sbjct: 1653 SPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATS 1699
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 61/152 (40%), Gaps = 46/152 (30%)
Query: 61 AYTQVSPAYTQVSPA-YTQVSPA-YTQVSPAYIPVSPAYTPVSP---------------- 102
Y Q SP + +SPA Y+ SPA Y+ SP + SPAY+P SP
Sbjct: 1532 GYGQ-SPMHGGMSPAGYSPSSPAGYSPTSP-FAVTSPAYSPTSPFAGAAAGAASPWVGRG 1589
Query: 103 AYTQVSPAYTQVSPAYTQVSP---------------------AYTQVSLA-----YTQVS 136
Y SPAY+ SP Y+ SP AY Y+ S
Sbjct: 1590 GYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTS 1649
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
AY+ SP SP Y+ SP Y+ S A++
Sbjct: 1650 PAYSPTSPMGGITSPQYSPTSPRYSPTSPAFS 1681
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 59 SPAYTQVSPAYT--QVSPAYTQVSPAYT------QVSPAYIPVSPAYTPVSPAYTQVSPA 110
SPAY+ SPAY + SP Y+ SPAY+ SP Y P SP Y+P SPA++ SPA
Sbjct: 1613 SPAYSPASPAYGGGRTSPGYSPTSPAYSPTSPMGATSPRYSPTSPQYSPASPAFSPTSPA 1672
Query: 111 YTQVSP-AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP A+ SP Y+ S A++ S +Y+ SP Y+ SP+Y+ SPAY+ S Y+
Sbjct: 1673 YSPTSPQAFQATSPKYSPTSPAFSPTSPSYSPTSPVYSPTSPSYSPASPAYSPTSPVYS 1731
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP-AYTQVSPA 117
SP Y+ SPAY+ SP SP Y+ SP Y P SPA++P SPAY+ SP A+ SP
Sbjct: 1629 SPGYSPTSPAYSPTSP-MGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPK 1687
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
Y+ SPA++ S +Y+ S Y+ SP+Y+ SPAY+ SP Y+ S
Sbjct: 1688 YSPTSPAFSPTSPSYSPTSPVYSPTSPSYSPASPAYSPTSPVYSPTS 1734
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY--TQVSPAYTQVSPAY 118
Y SP+Y+ SP Y SP Y+ SP+Y P SPAY+P SPAY + SP Y+ SPAY
Sbjct: 1580 GYGATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAY 1639
Query: 119 T------QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP-AYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S A++ SPAY+ SP A+ SP Y+ S A++
Sbjct: 1640 SPTSPMGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFS 1696
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------YTPVSPAYT---- 105
SP+Y+ SP Y SP Y+ SP+Y+ SPAY P SPA Y+P SPAY+
Sbjct: 1585 SPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYSPTSP 1644
Query: 106 --QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS-LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
SP Y+ SP Y+ SPA++ S AY+ S A+ SP Y+ SPA++ SP+Y+
Sbjct: 1645 MGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFSPTSPSYSP 1704
Query: 163 VSSAYT 168
S Y+
Sbjct: 1705 TSPVYS 1710
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 53 ATVYTVSPAYTQ----------VSPAYTQVSPAYTQVSPAY--TQVSPAYIPVSPAYTP- 99
AT + SP Q SP+Y+ SPAY+ SPAY + SP Y P SPAY+P
Sbjct: 1583 ATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYSPT 1642
Query: 100 -----VSPAYTQVSPAYTQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAY 153
SP Y+ SP Y+ SPA++ SPAY+ S A+ S Y+ SPA++ SP+Y
Sbjct: 1643 SPMGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFSPTSPSY 1702
Query: 154 TQVSPAYTQVSSAYT 168
+ SP Y+ S +Y+
Sbjct: 1703 SPTSPVYSPTSPSYS 1717
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQ---VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++ SP T SP Y SPA+ +SP ++P + Y SP+Y+ SP Y SP
Sbjct: 1544 GFSPTSPFATATSP-YQPTSPAWGGAGGMSP-WVPRNQGYGATSPSYSPTSPQYNPTSPR 1601
Query: 118 YTQVSPAYTQVSLAYTQVSLAY--TQVSPAYTQVSPAYTQVSP 158
Y+ SP+Y+ S AY+ S AY + SP Y+ SPAY+ SP
Sbjct: 1602 YSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYSPTSP 1644
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 25/114 (21%)
Query: 79 VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP----------------------AYTQVSP 116
+SP SP Y P ++P SP T SP Y SP
Sbjct: 1528 MSPMQGGQSP-YAPGGAGFSPTSPFATATSPYQPTSPAWGGAGGMSPWVPRNQGYGATSP 1586
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY--TQVSPAYTQVSSAYT 168
+Y+ SP Y S Y+ S +Y+ SPAY+ SPAY + SP Y+ S AY+
Sbjct: 1587 SYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYS 1640
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 9/119 (7%)
Query: 59 SPAYTQVSPAYT--QVSPAYTQVSPAYT------QVSPAYIPVSPAYTPVSPAYTQVSPA 110
SPAY+ SPAY + SP Y+ SPAY+ SP Y P SP Y+P SPA++ SPA
Sbjct: 1613 SPAYSPASPAYGGGRTSPGYSPTSPAYSPTSPMGATSPRYSPTSPQYSPASPAFSPTSPA 1672
Query: 111 YTQVSP-AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP A+ SP Y+ S A++ S +Y+ SP Y+ SP+Y+ SPAY+ S Y+
Sbjct: 1673 YSPTSPQAFQATSPKYSPTSPAFSPTSPSYSPTSPVYSPTSPSYSPASPAYSPTSPVYS 1731
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP-AYTQVSPA 117
SP Y+ SPAY+ SP SP Y+ SP Y P SPA++P SPAY+ SP A+ SP
Sbjct: 1629 SPGYSPTSPAYSPTSP-MGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPK 1687
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
Y+ SPA++ S +Y+ S Y+ SP+Y+ SPAY+ SP Y+ S
Sbjct: 1688 YSPTSPAFSPTSPSYSPTSPVYSPTSPSYSPASPAYSPTSPVYSPTS 1734
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 66/117 (56%), Gaps = 9/117 (7%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY--TQVSPAYTQVSPAY 118
Y SP+Y+ SP Y SP Y+ SP+Y P SPAY+P SPAY + SP Y+ SPAY
Sbjct: 1580 GYGATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAY 1639
Query: 119 T------QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP-AYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S A++ SPAY+ SP A+ SP Y+ S A++
Sbjct: 1640 SPTSPMGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFS 1696
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 70/126 (55%), Gaps = 16/126 (12%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------YTPVSPAYT---- 105
SP+Y+ SP Y SP Y+ SP+Y+ SPAY P SPA Y+P SPAY+
Sbjct: 1585 SPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYSPTSP 1644
Query: 106 --QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS-LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
SP Y+ SP Y+ SPA++ S AY+ S A+ SP Y+ SPA++ SP+Y+
Sbjct: 1645 MGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFSPTSPSYSP 1704
Query: 163 VSSAYT 168
S Y+
Sbjct: 1705 TSPVYS 1710
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 53 ATVYTVSPAYTQ----------VSPAYTQVSPAYTQVSPAY--TQVSPAYIPVSPAYTP- 99
AT + SP Q SP+Y+ SPAY+ SPAY + SP Y P SPAY+P
Sbjct: 1583 ATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYSPT 1642
Query: 100 -----VSPAYTQVSPAYTQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAY 153
SP Y+ SP Y+ SPA++ SPAY+ S A+ S Y+ SPA++ SP+Y
Sbjct: 1643 SPMGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFSPTSPSY 1702
Query: 154 TQVSPAYTQVSSAYT 168
+ SP Y+ S +Y+
Sbjct: 1703 SPTSPVYSPTSPSYS 1717
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQ---VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++ SP T SP Y SPA+ +SP ++P + Y SP+Y+ SP Y SP
Sbjct: 1544 GFSPTSPFATATSP-YQPTSPAWGGAGGMSP-WVPRNQGYGATSPSYSPTSPQYNPTSPR 1601
Query: 118 YTQVSPAYTQVSLAYTQVSLAY--TQVSPAYTQVSPAYTQVSP 158
Y+ SP+Y+ S AY+ S AY + SP Y+ SPAY+ SP
Sbjct: 1602 YSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYSPTSP 1644
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 25/114 (21%)
Query: 79 VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP----------------------AYTQVSP 116
+SP SP Y P ++P SP T SP Y SP
Sbjct: 1528 MSPMQGGQSP-YAPGGAGFSPTSPFATATSPYQPTSPAWGGAGGMSPWVPRNQGYGATSP 1586
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY--TQVSPAYTQVSSAYT 168
+Y+ SP Y S Y+ S +Y+ SPAY+ SPAY + SP Y+ S AY+
Sbjct: 1587 SYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYS 1640
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 65/109 (59%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA+ SP++T SP Y+ SP Y P SP+Y+P SP Y+ SP Y+ SP Y
Sbjct: 1595 SPTYSPTSPAFGLTSPSFTPTSPNYSPTSPHYSPTSPSYSPTSPHYSPTSPRYSPTSPRY 1654
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SP Y+ S Y+ S Y+ SP Y+ SP+++ SP Y+ S ++
Sbjct: 1655 SPTSPRYSPTSPRYSPQSPNYSPTSPRYSPTSPSFSPTSPRYSPTSPSH 1703
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP+++ SP Y
Sbjct: 1637 SPHYSPTSPRYSPTSPRYSPTSPRYSPTSPRYSPQSPNYSPTSPRYSPTSPSFSPTSPRY 1696
Query: 119 TQVSPAYTQ-VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
+ SP++ S Y+ S Y+ SPAY+ SP+Y+ SPAY+ S A+ N+
Sbjct: 1697 SPTSPSHISPTSPKYSPTSPKYSPTSPAYSPTSPSYSPSSPAYSPTSPAWGASSSNQADK 1756
Query: 178 GRE-SNSRSSAY 188
+E N R +Y
Sbjct: 1757 DKEKKNGRGHSY 1768
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQVSPA 117
SPAY+ SP SP Y+ SP Y+ SPA+ P SP+Y+P SPA + SP Y+ SP
Sbjct: 1649 SPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQ 1708
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
++ SP Y+ S AY+ S Y+ SPAY+ SPAY+ SPAY
Sbjct: 1709 FSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAY 1751
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA-Y 111
A V + Y+ SPAY+ SP SP Y+ SP Y P SPA++P SP+Y+ SPA +
Sbjct: 1636 AGVGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPF 1695
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP Y+ SP ++ S Y+ S AY+ SP Y+ SPAY+ SPAY+ S AY
Sbjct: 1696 QATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAY 1751
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y + + SP Y+ SPAY+ SP SP Y P SP Y+P SPA++ SP+Y+ S
Sbjct: 1633 YGGAGVGNRASP-YSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTS 1691
Query: 116 PA-YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
PA + SP Y+ S ++ S Y+ SPAY+ SP Y+ SPAY+ S AY+
Sbjct: 1692 PAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYS 1745
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA-YIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SP Y+ SPA++ SP+Y+ SPA + SP Y+P SP ++ SP Y+ SPA
Sbjct: 1663 SPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPA 1722
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP----AYTQVSPA 159
Y+ SP Y+ S AY+ S AY+ SPAY +P A Q PA
Sbjct: 1723 YSPTSPQYSPTSPAYSPTSPAYSPTSPAYGGAAPNGGTAQQQNGPA 1768
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-------------------VSPAYTP 99
SPAY+ SP Y+ SP ++ SP+++ SP Y P SPAY+P
Sbjct: 1595 SPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGVGNRASPYSPTSPAYSP 1654
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA-YTQVSPAYTQVSPAYTQVSP 158
SP SP Y+ SP Y+ SPA++ S +Y+ S A + SP Y+ SP ++ SP
Sbjct: 1655 TSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSP 1714
Query: 159 AYTQVSSAYT 168
Y+ S AY+
Sbjct: 1715 TYSPASPAYS 1724
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 65/167 (38%), Gaps = 57/167 (34%)
Query: 56 YTVSPAYTQVSPA-YTQVSPA-------YTQVSPAYTQVSP----------------AYI 91
Y SP + +SPA Y+ SPA + SPAY+ SP Y
Sbjct: 1533 YGQSPMHGGMSPAGYSPSSPAGYSPTSPFAVTSPAYSPTSPFAGAAAGSASPWVGRGGYG 1592
Query: 92 PVSPAYTPVSPAYTQVSPA---------------------------------YTQVSPAY 118
SPAY+P SP Y+ SP Y+ SPAY
Sbjct: 1593 ATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGVGNRASPYSPTSPAY 1652
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ SP S Y+ S Y+ SPA++ SP+Y+ SPA Q +S
Sbjct: 1653 SPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATS 1699
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 46/152 (30%)
Query: 61 AYTQVSPAYTQVSPA-YTQVSPA-YTQVSPAYIPVSPAYTPVSP---------------- 102
Y Q SP + +SPA Y+ SPA Y+ SP + SPAY+P SP
Sbjct: 1532 GYGQ-SPMHGGMSPAGYSPSSPAGYSPTSP-FAVTSPAYSPTSPFAGAAAGSASPWVGRG 1589
Query: 103 AYTQVSPAYTQVSPAYTQVSP---------------------AYTQVSLA-----YTQVS 136
Y SPAY+ SP Y+ SP AY + Y+ S
Sbjct: 1590 GYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGVGNRASPYSPTS 1649
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
AY+ SP SP Y+ SP Y+ S A++
Sbjct: 1650 PAYSPTSPMGGITSPQYSPTSPRYSPTSPAFS 1681
>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
RN66]
gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
[Cryptosporidium muris RN66]
Length = 1927
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V +SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 1692 VEPLSPNYSPTSPNYSPTSPNYSPTSPNYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPT 1751
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1752 SPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPSSPHYS 1805
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 62/110 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1703 SPNYSPTSPNYSPTSPNYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPNYSPTSPHY 1762
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S +Y
Sbjct: 1763 SPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPSSPHYSPTSPSYN 1812
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 62/115 (53%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1731 SPHYSPTSPHYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPTSPHY 1790
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
+ SP Y+ S Y+ S +Y SP Y+ SP Y SP Y+ S Y + N
Sbjct: 1791 SPTSPNYSPSSPHYSPTSPSYNPASPNYSPSSPHYNPASPNYSPSSPQYNPALPN 1845
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1689 SPGVEPLSPNYSPTSPNYSPTSPNYSPTSPNYSPTSPHYSPTSPHYSPTSPHYSPTSPHY 1748
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1749 SPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYS 1798
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 58/110 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP+Y
Sbjct: 1752 SPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPSSPHYSPTSPSY 1811
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y S Y+ SP Y P Y+ SP Y S Y+
Sbjct: 1812 NPASPNYSPSSPHYNPASPNYSPSSPQYNPALPNYSPSSPQYNPTSPNYS 1861
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 57/109 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP+Y SP Y
Sbjct: 1759 SPHYSPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPSSPHYSPTSPSYNPASPNY 1818
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SP Y S Y+ S Y P Y+ SP Y SP Y+ S Y
Sbjct: 1819 SPSSPHYNPASPNYSPSSPQYNPALPNYSPSSPQYNPTSPNYSPSSPNY 1867
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP+Y SP Y+ SP Y P SP Y+P SP Y P Y+ SP Y
Sbjct: 1794 SPNYSPSSPHYSPTSPSYNPASPNYSPSSPHYNPASPNYSPSSPQYNPALPNYSPSSPQY 1853
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQV-SPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y L+ + SP Y+ SP Y Q AY S +YT
Sbjct: 1854 NPTSPNYSPSSPNYV---LSNGNIDSPQYSPSSPHYDQSVAAYHPTSPSYT 1901
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV-----SPAYTPVSPAYTQVSPAYTQ 113
SP Y P Y+ SP Y SP Y+ SP Y+ SP Y+P SP Y Q AY
Sbjct: 1836 SPQYNPALPNYSPSSPQYNPTSPNYSPSSPNYVLSNGNIDSPQYSPSSPHYDQSVAAYHP 1895
Query: 114 VSPAYTQVSPA 124
SP+YT + A
Sbjct: 1896 TSPSYTSTNMA 1906
>gi|167527458|ref|XP_001748061.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773479|gb|EDQ87118.1| predicted protein [Monosiga brevicollis MX1]
Length = 1307
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP+Y+ SP Y+ SP+Y+ SP Y+ SP+Y P SP Y+P SP+Y+ SP Y+ SP+Y
Sbjct: 1202 SPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSY 1261
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQ-VSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S +Y+ + + SP Y+ SP Y+ SP Y+
Sbjct: 1262 SPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYS 1305
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP+Y+ SP Y+ SP+Y+ SP Y P SP+Y+P SP Y+ SP+Y+ SP Y+
Sbjct: 1198 YSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPT 1257
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQ-VSPAYTQVSPAYTQVSSAYT 168
SP+Y+ S Y+ S +Y+ + + SP Y+ SP Y+ S Y+
Sbjct: 1258 SPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYS 1305
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 29/135 (21%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPA-----------------------------YTQVSPAYI 91
AY SPAY+ SP+Y+ SP Y+ SP+Y
Sbjct: 1147 AYNAQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPTSPNYSPTSPSYS 1206
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP Y+P SP+Y+ SP Y+ SP+Y+ SP Y+ S +Y+ S Y+ SP+Y+ SP
Sbjct: 1207 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1266
Query: 152 AYTQVSPAYTQVSSA 166
Y+ SP+Y+ ++
Sbjct: 1267 NYSPTSPSYSPTANG 1281
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 68 AYTQVSPAYTQVSPAYTQVSP-AYIPVSPAY---------------------TPVSPAYT 105
AY SPAY+ SP+Y+ SP P SP Y +P SP+Y+
Sbjct: 1147 AYNAQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPTSPNYSPTSPSYS 1206
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP Y+ SP+Y+ SP Y+ S +Y+ S Y+ SP+Y+ SP Y+ SP+Y+ S
Sbjct: 1207 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1266
Query: 166 AYT 168
Y+
Sbjct: 1267 NYS 1269
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 58 VSPAYTQVSPAYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQVS 115
+SP SP Y SPA Y+ SP+Y+ SP P SP ++P SPA +T SP Y+ S
Sbjct: 1057 MSPGVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTS 1116
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P+Y+ SP ++ Q AY SPAY+ S +Y+
Sbjct: 1117 PSYSPTSP-----NVGGAQSPSYSPTSPSYSPSSP-AYNAQSPAYSPTSPSYS 1163
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 59 SPAYTQVSPAYTQVSPAYTQV--------SPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SP Y+ SP+Y+ SP Y+ SP Y P SP Y+P
Sbjct: 1258 SPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYSP 1306
>gi|410927572|ref|XP_003977215.1| PREDICTED: uncharacterized protein LOC101071243 [Takifugu rubripes]
Length = 313
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 11 GGTLTVEIFL--------LVFLLLNVLSYILIEKFKRKDLEDYLST----DEDEATVYTV 58
GG +F L L +Y + ++++R + Y D +
Sbjct: 89 GGEENCFLFHCQGEQDCPLRKALDGTNTYDIYKEYQRCNSPAYHCNSPAYHRDSPAYHRD 148
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY SP Y + SPA+ SPA+ +PA P SPAY SPAY + SPA SPAY
Sbjct: 149 SPAYHCNSPTYHRDSPAHNCNSPAHNYNNPACHPDSPAYHRNSPAYHRNSPACHPNSPAY 208
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SPA + S AY + S A + SPA + SPA + SPA + S AY
Sbjct: 209 HRESPACHRDSPAYHRESPACHRDSPACHRDSPACHRDSPACHRDSPAY 257
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP+Y+ SP Y+ SP+Y+ SP Y+ SP+Y P SP Y+P SP+Y+ SP Y+ SP+Y
Sbjct: 1638 SPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSY 1697
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQ-VSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S +Y+ + + SP Y+ SP Y+ SP Y+
Sbjct: 1698 SPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYS 1741
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP+Y+ SP Y+ SP+Y+ SP Y P SP+Y+P SP Y+ SP+Y+ SP Y+
Sbjct: 1634 YSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPT 1693
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQ-VSPAYTQVSPAYTQVSSAYT 168
SP+Y+ S Y+ S +Y+ + + SP Y+ SP Y+ S Y+
Sbjct: 1694 SPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYS 1741
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 29/130 (22%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPA-----------------------------YTQVSPAYI 91
AY SPAY+ SP+Y+ SP Y+ SP+Y
Sbjct: 1583 AYNAQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPTSPNYSPTSPSYS 1642
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP Y+P SP+Y+ SP Y+ SP+Y+ SP Y+ S +Y+ S Y+ SP+Y+ SP
Sbjct: 1643 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1702
Query: 152 AYTQVSPAYT 161
Y+ SP+Y+
Sbjct: 1703 NYSPTSPSYS 1712
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 68 AYTQVSPAYTQVSPAYTQVSP-AYIPVSPAY---------------------TPVSPAYT 105
AY SPAY+ SP+Y+ SP P SP Y +P SP+Y+
Sbjct: 1583 AYNAQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPTSPNYSPTSPSYS 1642
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP Y+ SP+Y+ SP Y+ S +Y+ S Y+ SP+Y+ SP Y+ SP+Y+ S
Sbjct: 1643 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1702
Query: 166 AYT 168
Y+
Sbjct: 1703 NYS 1705
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 58 VSPAYTQVSPAYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQVS 115
+SP SP Y SPA Y+ SP+Y+ SP P SP ++P SPA +T SP Y+ S
Sbjct: 1493 MSPGVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTS 1552
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P+Y+ SP ++ Q AY SPAY+ S +Y+
Sbjct: 1553 PSYSPTSP-----NVGGAQSPSYSPTSPSYSPSSP-AYNAQSPAYSPTSPSYS 1599
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 59 SPAYTQVSPAYTQVSPAYTQV--------SPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SP Y+ SP+Y+ SP Y+ SP Y P SP Y+P
Sbjct: 1694 SPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYSP 1742
>gi|296422783|ref|XP_002840938.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637165|emb|CAZ85129.1| unnamed protein product [Tuber melanosporum]
Length = 1025
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ----- 113
SP Y+ SPAY+ SP SP ++ SP + P SPAY+P SP Y+ SPAY
Sbjct: 844 SPGYSPASPAYSPTSPNMAITSPGFSAASPRFSPASPAYSPTSPGYSPTSPAYGGGLGVG 903
Query: 114 ---VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
SP Y+ SP+++ S Y+ S Y+ SPAY+ SP Y+ SPA++
Sbjct: 904 GSPTSPNYSPTSPSFSPTSPTYSPTSPNYSPTSPAYSPTSPDYSPTSPAFS 954
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 24/125 (19%)
Query: 59 SPAYTQVSPAYTQ--------VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
SP Y+ SPAY SP Y+ SP+++ SP Y P SP Y+P SPAY+ SP
Sbjct: 886 SPGYSPTSPAYGGGLGVGGSPTSPNYSPTSPSFSPTSPTYSPTSPNYSPTSPAYSPTSPD 945
Query: 111 YTQVSPAYTQ-----------VSPAYTQVSLAYTQVSLA--YTQVSPAY---TQVSPAYT 154
Y+ SPA++ SP Y+ S Y+ S A Y+ SP + TQ SP ++
Sbjct: 946 YSPTSPAFSGGVGNSHSPTSPTSPNYSPTSPVYSPGSPAASYSPTSPTFQSPTQGSPRWS 1005
Query: 155 QVSPA 159
SP
Sbjct: 1006 PTSPG 1010
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ--- 148
P SP Y+P SPAY+ SP SP ++ SP ++ S AY+ S Y+ SPAY
Sbjct: 842 PTSPGYSPASPAYSPTSPNMAITSPGFSAASPRFSPASPAYSPTSPGYSPTSPAYGGGLG 901
Query: 149 -----VSPAYTQVSPAYTQVSSAYT 168
SP Y+ SP+++ S Y+
Sbjct: 902 VGGSPTSPNYSPTSPSFSPTSPTYS 926
>gi|133323|sp|P11414.1|RPB1_CRIGR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|387055|gb|AAA37008.1| RNA polymerase II largest subunit, partial [Cricetulus griseus]
Length = 467
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 457
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP
Sbjct: 360 TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPK 419
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ SP Y+ S Y+ SP Y+ SP Y+ SPA
Sbjct: 420 YSPTSPTYSPTS----PKGSTYSPTSPGYSPTSPTYSLTSPA 457
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
YT SP Y+ SP Y P SP Y+P SP Y+ +P Y+ SP Y+ SP YT S Y+
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPA---YTQVSSAYTQV 170
S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 447
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 398 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 457
>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis
TU502]
gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Cryptosporidium hominis]
Length = 1895
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 62/110 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1679 SPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHY 1738
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1739 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1788
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + +SP + SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y
Sbjct: 1665 DNKISNISPDLSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHY 1724
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1725 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1781
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1742 SPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPSSPHYSPTSPQY 1801
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SP Y S Y+ S Y+ SP Y SP Y+ SP Y
Sbjct: 1802 SPTSPNYNPASPNYSPTS-HYSPTSPNYNPTSPNYSPSSPNY 1842
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS--- 115
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y SP Y+ S
Sbjct: 1763 SPHYSPTSPHYSPTSPHYSPTSPHYSPSSPHYSPTSPQYSPTSPNYNPASPNYSPTSHYS 1822
Query: 116 ---PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP-AYTQV--SPAYT 161
P Y SP Y+ S Y + SP+ Q P A T V SP+Y+
Sbjct: 1823 PTSPNYNPTSPNYSPSSPNYISNNSGSPGYSPSSPQYDPIAVTSVPRSPSYS 1874
>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
subunit, long PHYSPTS repeat at
gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
[Cryptosporidium parvum Iowa II]
Length = 1902
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 62/110 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1686 SPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHY 1745
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1746 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1795
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + +SP + SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y
Sbjct: 1672 DNKISNISPDLSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHY 1731
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1732 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1788
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1749 SPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPSSPHYSPTSPQY 1808
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SP Y S Y+ S Y+ SP Y SP Y+ SP Y
Sbjct: 1809 SPTSPNYNPASPNYSPTS-HYSPTSPNYNPTSPNYSPSSPNY 1849
>gi|194375696|dbj|BAG57192.1| unnamed protein product [Homo sapiens]
Length = 855
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 738 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 797
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
P Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 798 GPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 845
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ P Y+ SP
Sbjct: 748 TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTGPTYSPTSPK 807
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 808 YSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 845
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
YT SP Y+ SP Y P SP Y+P SP Y+ +P Y+ SP Y+ SP YT S Y+
Sbjct: 738 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 797
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPA---YTQVSSAYT 168
Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 798 GPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS 833
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ P Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 786 VYTPTSPKYSPTGPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 845
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 58/103 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
P Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1476 GPKYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1535
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1536 SPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1578
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
P Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y
Sbjct: 1476 GPKYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1535
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1536 SPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1578
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 17/124 (13%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA-------------YTPVSPAY 104
+SPA SP Y+ SP Y+ SPAY+ SP Y P SPA Y+P SP Y
Sbjct: 1431 MSPA----SPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSPQY 1486
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S
Sbjct: 1487 SPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTS 1546
Query: 165 SAYT 168
Y+
Sbjct: 1547 PQYS 1550
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 17/119 (14%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-------------YTQVSP 109
+++SPA SP Y+ SP Y+ SPAY P SP Y+P SPA Y+ SP
Sbjct: 1429 SRMSPA----SPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSP 1484
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1485 QYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1543
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA-------------YIPVSPAYTPVSPAYT 105
SP Y+ SP Y+ SPAY+ SP Y+ SPA Y P SP Y+P SP Y+
Sbjct: 1435 SPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSPQYSPTSPQYS 1494
Query: 106 QVSPAY----TQ---VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP Y Q SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP
Sbjct: 1495 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSP 1554
Query: 159 AYTQVSSAYT 168
Y+ S Y+
Sbjct: 1555 QYSPTSPQYS 1564
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-------------YTQVSPAYIPVSPAYTPVSPAYT 105
SP Y+ SPAY+ SP Y+ SPA Y+ SP Y P SP Y+P SP Y+
Sbjct: 1442 SPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSPQYSPTSPQYSPTSPQYS 1501
Query: 106 QVSPAY----TQ---VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP Y Q SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP
Sbjct: 1502 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSP 1561
Query: 159 AYTQVSSAYT 168
Y+ S Y+
Sbjct: 1562 QYSPTSPQYS 1571
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 60/167 (35%), Gaps = 59/167 (35%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQV----------SPAYIPVSP--------------- 95
+ SP Y SPAY SPA + SPAY P SP
Sbjct: 1349 GFAPTSPGYVPTSPAYNATSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTS 1408
Query: 96 ---------------------AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA--- 131
+P SP Y+ SP Y+ SPAY+ SP Y+ S A
Sbjct: 1409 PSYSPSSPVIDASNARSTYTSRMSPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPR 1468
Query: 132 ----------YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1469 GRRLGASGPKYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1515
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 56/148 (37%), Gaps = 42/148 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP---AYTQVSPAYIPVSPA------------------- 96
SP Y SPAY SPA +SP A SPAY P SP
Sbjct: 1354 SPGYVPTSPAYNATSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTSPSYSP 1413
Query: 97 -----------------YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY---TQVS 136
+P SP Y+ SP Y+ SPAY+ SP Y+ S A ++
Sbjct: 1414 SSPVIDASNARSTYTSRMSPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLG 1473
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ + SP Q SP Q SP Q S
Sbjct: 1474 ASGPKYSPTSPQYSPTSPQYSPTSPQYS 1501
>gi|18736|emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max]
Length = 977
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SPAY+ SP+Y P SPAY+P SPAY+ SPAY+ SP+Y
Sbjct: 756 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSY 815
Query: 119 TQVSPAYTQVSLAYT 133
+ SPAY+ S +Y+
Sbjct: 816 SPTSPAYSPTSPSYS 830
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SP Y+ SP Y+ SPAY P SP+Y+P SPAY+ SPAY+ SPAY+
Sbjct: 751 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSP 810
Query: 121 VSPAYTQVSLAYTQVSLAYT 140
SP+Y+ S AY+ S +Y+
Sbjct: 811 TSPSYSPTSPAYSPTSPSYS 830
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SPAY+ SPAY+ SPAY+
Sbjct: 751 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSP 810
Query: 128 VSLAYTQVSLAYTQVSPAYT 147
S +Y+ S AY+ SP+Y+
Sbjct: 811 TSPSYSPTSPAYSPTSPSYS 830
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SP Y P SP Y+P SPAY+ SP+Y+ SPAY+ SPAY+ S AY+
Sbjct: 751 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSP 810
Query: 135 VSLAYTQVSPAYTQVSPAYT 154
S +Y+ SPAY+ SP+Y+
Sbjct: 811 TSPSYSPTSPAYSPTSPSYS 830
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP Y P SP Y+P SP Y+ SPAY+ SP+Y+ SPAY+ S AY+ S AY+
Sbjct: 751 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSP 810
Query: 142 VSPAYTQVSPAYTQVSPAYT 161
SP+Y+ SPAY+ SP+Y+
Sbjct: 811 TSPSYSPTSPAYSPTSPSYS 830
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T SP+ P Y+ SPAY+ SP+Y+ SPAY P SPAY+ SPAY+ SP+Y+ SP
Sbjct: 765 TYSPSS----PGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSP 820
Query: 117 AYTQVSPAYT 126
AY+ SP+Y+
Sbjct: 821 AYSPTSPSYS 830
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 50/114 (43%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----------- 107
SP+Y+ SPAY+ SPAY+ SPAY+ SP+Y P SPAY+P SP+Y+
Sbjct: 784 SPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSY 843
Query: 108 --------------------------------------SPAYTQVSPAYTQVSP 123
S Y+ S AY+ SP
Sbjct: 844 SPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP-SLAYSPSSP 896
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase II subunit A; AltName: Full=DNA-directed RNA
polymerase III largest subunit
Length = 1970
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1872 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1931
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1932 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1981
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1883 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1942
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1943 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1981
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1920 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1979
Query: 111 YT 112
+
Sbjct: 1980 IS 1981
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ +P Y+ SP Y+ SP YT SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 1878 SPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKG 1937
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP SP Y+ SP Y+ SPA +
Sbjct: 1938 STYSP------------------TSPGYSPTSPTYSLTSPAIS 1962
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1909
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1910 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1957
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1861 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1920
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1921 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1957
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1909
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1910 SPTYSPTSPKYSPTSPTYS 1928
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1898 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1957
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1804 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1863
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1864 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1913
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1815 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1874
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1875 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1913
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1852 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1911
Query: 111 YT 112
+
Sbjct: 1912 IS 1913
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1879
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1880 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1927
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1831 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1890
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1891 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1927
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1879
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1880 SPTYSPTSPKYSPTSPTYS 1898
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1868 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1927
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1858 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1917
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1918 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1967
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1869 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1928
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1929 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1967
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1906 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1965
Query: 111 YT 112
+
Sbjct: 1966 IS 1967
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio anubis]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase II subunit A; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName:
Full=RNA-directed RNA polymerase II subunit RPB1
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>gi|119610589|gb|EAW90183.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_c [Homo sapiens]
Length = 1549
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1491
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1492 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1539
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1443 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1502
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1503 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1539
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1491
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1492 SPTYSPTSPKYSPTSPTYS 1510
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1480 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1539
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1815 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1924
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1826 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1885
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1886 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1924
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1863 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1922
Query: 111 YT 112
+
Sbjct: 1923 IS 1924
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA-YTQVSPAYTQ 120
Y+ SPAY+ SP SP Y+ SP Y P SPA++P SP+Y+ SPA + SP Y+
Sbjct: 1645 YSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSP 1704
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP ++ S Y+ S AY+ SP Y+ SPAY+ SPAY+ S Y
Sbjct: 1705 TSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPTY 1751
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA--------YTQVSPA 110
SPAY+ SP SP Y+ SP Y+ SPA+ P SP+Y+P SPA Y+ SP
Sbjct: 1649 SPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQ 1708
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++ SP Y+ SPAY+ S Y+ S AY+ SPAY+ SP Y +P + Q
Sbjct: 1709 FSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPTYGGAAP-----NGGTAQQ 1763
Query: 171 ILNKIRPG 178
+ RPG
Sbjct: 1764 QNGQARPG 1771
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y + A + SP Y+ SPAY+ SP SP Y P SP Y+P SPA++ SP+Y+ S
Sbjct: 1633 YGGAGAGNRASP-YSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTS 1691
Query: 116 PA-YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
PA + SP Y+ S ++ S Y+ SPAY+ SP Y+ SPAY+ S AY+
Sbjct: 1692 PAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYS 1745
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SPA++ SP+Y+ SPA + SP Y P SP ++P SP Y+ SPAY+ SP
Sbjct: 1670 SPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTSPQ 1729
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
Y+ SPAY+ S AY+ S Y +P Q P +
Sbjct: 1730 YSPTSPAYSPTSPAYSPTSPTYGGAAPNGGTAQQQNGQARPGWGNTGG 1777
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-------------------VSPAYTP 99
SPAY+ SP Y+ SP ++ SP+++ SP Y P SPAY+P
Sbjct: 1595 SPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSP 1654
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA-YTQVSPAYTQVSPAYTQVSP 158
SP SP Y+ SP Y+ SPA++ S +Y+ S A + SP Y+ SP ++ SP
Sbjct: 1655 TSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSP 1714
Query: 159 AYTQVSSAYT 168
Y+ S AY+
Sbjct: 1715 TYSPASPAYS 1724
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 65/167 (38%), Gaps = 57/167 (34%)
Query: 56 YTVSPAYTQVSPA-YTQVSPA-------YTQVSPAYTQVSP----------------AYI 91
Y SP + +SPA Y+ SPA + SPAY+ SP Y
Sbjct: 1533 YGQSPMHGGISPAGYSPSSPAGYSPTSPFAVTSPAYSPTSPFAGAAAGGASPWVGRGGYG 1592
Query: 92 PVSPAYTPVSPAYTQVSPA---------------------------------YTQVSPAY 118
SPAY+P SP Y+ SP Y+ SPAY
Sbjct: 1593 ATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAY 1652
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ SP S Y+ S Y+ SPA++ SP+Y+ SPA Q +S
Sbjct: 1653 SPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATS 1699
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 61/152 (40%), Gaps = 46/152 (30%)
Query: 61 AYTQVSPAYTQVSPA-YTQVSPA-YTQVSPAYIPVSPAYTPVSP---------------- 102
Y Q SP + +SPA Y+ SPA Y+ SP + SPAY+P SP
Sbjct: 1532 GYGQ-SPMHGGISPAGYSPSSPAGYSPTSP-FAVTSPAYSPTSPFAGAAAGGASPWVGRG 1589
Query: 103 AYTQVSPAYTQVSPAYTQVSP---------------------AYTQVSLA-----YTQVS 136
Y SPAY+ SP Y+ SP AY Y+ S
Sbjct: 1590 GYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTS 1649
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
AY+ SP SP Y+ SP Y+ S A++
Sbjct: 1650 PAYSPTSPMGGITSPQYSPTSPRYSPTSPAFS 1681
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM 1558]
Length = 1808
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQVSPA 117
SPAY+ SP SP Y+ SP Y+ SPA+ P SP Y+P SPA + SP Y+ SP
Sbjct: 1668 SPAYSPTSPMGI-TSPRYSPTSPKYSPASPAFSPTSPVYSPTSPAPFQATSPRYSPNSPT 1726
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
++ SP Y+ S Y+ S A++ SPAY+ SPAY+ SPAY+ S A
Sbjct: 1727 FSPTSPVYSPTSPVYSPASPAFSPTSPAYSPASPAYSPNSPAYSPTSPA 1775
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY--------TQVSPA 110
SPAY+ SP Y+ SP Y+ SP ++ SP + P SP Y+P SPAY + SP
Sbjct: 1605 SPAYSPSSPQYSPTSPMYSPASPKFSPSSPTFSPSSPNYSPASPAYGGGGGGGLARNSP- 1663
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
++ SPAY+ SP S Y+ S Y+ SPA++ SP Y+ SPA Q +S
Sbjct: 1664 FSPASPAYSPTSPMGI-TSPRYSPTSPKYSPASPAFSPTSPVYSPTSPAPFQATS 1717
>gi|297273958|ref|XP_001088769.2| PREDICTED: hypothetical protein LOC700415, partial [Macaca mulatta]
Length = 359
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 242 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 301
Query: 122 SPAYTQVSLAYTQVSLAYTQVSP---AYTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 302 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 349
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP
Sbjct: 252 TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPK 311
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ SP Y+ S Y+ SP Y+ SP Y+ SPA
Sbjct: 312 YSPTSPTYSPTSPK----GSTYSPTSPGYSPTSPTYSLTSPA 349
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
YT SP Y+ SP Y P SP Y+P SP Y+ +P Y+ SP Y+ SP YT S Y+
Sbjct: 242 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 301
Query: 136 SLAYTQVSPAYTQVSPAYTQVSP---AYTQVSSAYTQV 170
S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 302 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 339
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 290 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 349
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1852 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1911
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1912 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1961
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1863 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1922
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1923 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1961
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1900 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1959
Query: 111 YT 112
+
Sbjct: 1960 IS 1961
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1684 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1743
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1744 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1793
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1695 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1754
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1755 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1793
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 36/126 (28%)
Query: 79 VSPAYTQVSPAYIPVSPA------------------------------------YTPVSP 102
+SP+Y+ SPAY P SP YTP SP
Sbjct: 1630 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1689
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ SP Y+ SP Y+ + Y+ S Y+ SP YT SP Y+ SP Y+
Sbjct: 1690 KYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSP 1749
Query: 163 VSSAYT 168
S Y+
Sbjct: 1750 TSPKYS 1755
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1732 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1791
Query: 111 YT 112
+
Sbjct: 1792 IS 1793
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
[Xenopus (Silurana) tropicalis]
Length = 1946
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1829 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1888
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1889 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1938
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1840 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1899
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1900 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1938
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1877 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1936
Query: 111 YT 112
+
Sbjct: 1937 IS 1938
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1922
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1826 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1885
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1886 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1922
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1875 SPTYSPTSPKYSPTSPTYS 1893
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1863 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1922
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1922
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1826 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1885
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1886 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1922
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1875 SPTYSPTSPKYSPTSPTYS 1893
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1790 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1849
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1850 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1899
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1801 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1860
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1861 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1899
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1838 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1897
Query: 111 YT 112
+
Sbjct: 1898 IS 1899
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1841
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1842 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1889
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1793 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1852
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1853 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1889
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1841
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1842 SPTYSPTSPKYSPTSPTYS 1860
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1830 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1889
>gi|119610588|gb|EAW90182.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_b [Homo sapiens]
Length = 1511
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1453
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1454 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1501
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1405 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1464
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1465 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1501
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1453
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1454 SPTYSPTSPKYSPTSPTYS 1472
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1442 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1501
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 54/87 (62%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP Y+ SPAY+ SP Y+ SPAY P SP Y+P SPAY+ SPAY+ SP Y
Sbjct: 1587 SPAYSPSSPNYSPTSPAYSPTSPNYSPTSPAYSPTSPNYSPTSPAYSPTSPAYSPTSPNY 1646
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+ SPAY+ S T Y+ SPA
Sbjct: 1647 SPSSPAYSPTSPRATSPGAGYSPSSPA 1673
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 66 SPAYTQVSP-AYTQVSPAYTQVSPAYIPVSPA-YTPVSPAYTQVSPAYTQVSPAYTQVSP 123
SP + SP A + SP + Y P SP Y+P SPAY+ SP Y+ SPAY+ SP
Sbjct: 1553 SPYNSAFSPVASSPTSPGH---QGGYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSP 1609
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S AY+ S Y+ SPAY+ SPAY+ SP Y+ S AY+
Sbjct: 1610 NYSPTSPAYSPTSPNYSPTSPAYSPTSPAYSPTSPNYSPSSPAYS 1654
>gi|291235702|ref|XP_002737783.1| PREDICTED: DNA-directed RNA polymerase II largest subunit-like
[Saccoglossus kowalevskii]
Length = 1312
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 82/166 (49%), Gaps = 36/166 (21%)
Query: 54 TVYTVSPAYTQVSPAYTQVSP-------AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
T++ PAYT +PAYT +P AYT + AYT +PAY +PAYT +PAYT
Sbjct: 758 TLHIPHPAYTSHTPAYTSHTPAYAFNTLAYTSHTLAYTSHTPAYTSHTPAYTSHTPAYTS 817
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS---------------- 150
+PAYT +PAYT +PAYT + AY +LAYT +PAY +
Sbjct: 818 HTPAYTSHTPAYTSHTPAYTSYTPAYASNTLAYTSHTPAYASNTLAYTSHTRLTYPTPCL 877
Query: 151 -----------PAYTQVSPAYTQVSSAYTQVILNKIR--PGRESNS 183
PAYT +PAYT +SAY L I P SN+
Sbjct: 878 HIPHPGLHIPHPAYTSHTPAYTSHTSAYASNTLAYISHTPAYASNT 923
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 97/206 (47%), Gaps = 45/206 (21%)
Query: 6 FLGLIGGTLTVEIFLLVFLLLNVLSYILIEKFKR--KDLEDYLSTDEDEA-TVYTVSPAY 62
F+G LT L V L L + +Y+ I++ KD + T A T YT PAY
Sbjct: 26 FVGTRSEFLTKPGRLGVMLSL-LQTYLGIDELSADLKDTRCWAYTSHTLAYTSYT--PAY 82
Query: 63 TQVSPAYTQVSPAYTQVS-------PAYTQVSPAY-----------IPVSPAYTPVSP-- 102
T +PAYT +PAYT + PAYT +PAY I +PAYT +P
Sbjct: 83 TSHTPAYTSHNPAYTSHTQAYISHTPAYTSHNPAYTSHTQAYISSYISCTPAYTSHNPVY 142
Query: 103 -------------------AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
AYT +PAYT +PAYT +PAYT + AY +LAYT +
Sbjct: 143 TSHTLAYTSHTLAYTSHTLAYTSYTPAYTSHTPAYTSHNPAYTSHTQAYISCTLAYTSHT 202
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P YT +PAYT + A T + AYT
Sbjct: 203 PVYTSHTPAYTSHTLANTSHTLAYTS 228
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 79/174 (45%), Gaps = 50/174 (28%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
AYT +PAYT +PAYT +PAYT +PAY +PAYT +PAYT +PAY + AYT
Sbjct: 793 AYTSHTPAYTSHTPAYTSHTPAYTSHTPAYTSHTPAYTSHTPAYTSYTPAYASNTLAYTS 852
Query: 121 VSPAYTQVSLAYTQVSL--------------------AYTQVSPAYT------------- 147
+PAY +LAYT + AYT +PAYT
Sbjct: 853 HTPAYASNTLAYTSHTRLTYPTPCLHIPHPGLHIPHPAYTSHTPAYTSHTSAYASNTLAY 912
Query: 148 ---------------QVSPAYTQVSPAYTQVSSAYTQVILNKIR--PGRESNSR 184
+PAYT +PAYT + AYT L I P SN+R
Sbjct: 913 ISHTPAYASNTLAYISHTPAYTSHTPAYTSHTPAYTSNTLAYISHTPAYASNTR 966
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 61 AYTQVSPAY--------TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
AYT +PAY T +PAYT +P YT + AY +PAYT +P+ +PAY
Sbjct: 225 AYTSHTPAYISHTLAFYTSCTPAYTSHTPTYTSHTSAYTSHTPAYTSHTPSCRSHTPAYI 284
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT-QVI 171
+PAYT +P YT +LAYT +LAYT +PAYT +PAY + A T + AYT
Sbjct: 285 SHTPAYTSNTPVYTSRTLAYTSHTLAYTSHTPAYTSHTPAYISHTLACTSHTLAYTSHTR 344
Query: 172 LNKIRPG 178
L PG
Sbjct: 345 LTYPTPG 351
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 72/134 (53%), Gaps = 22/134 (16%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP-------- 109
+PAYT +P YT + AYT + AYT + AY +PAYT +PAYT +P
Sbjct: 131 CTPAYTSHNPVYTSHTLAYTSHTLAYTSHTLAYTSYTPAYTSHTPAYTSHNPAYTSHTQA 190
Query: 110 ------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA--------YTQVSPAYTQ 155
AYT +P YT +PAYT +LA T +LAYT +PA YT +PAYT
Sbjct: 191 YISCTLAYTSHTPVYTSHTPAYTSHTLANTSHTLAYTSHTPAYISHTLAFYTSCTPAYTS 250
Query: 156 VSPAYTQVSSAYTQ 169
+P YT +SAYT
Sbjct: 251 HTPTYTSHTSAYTS 264
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PAYT +PAYT +PAY + AYT +PAY +PAYT +PAY +PAY
Sbjct: 571 PAYTSHTPAYTSHTPAYASNTLAYTSHTPAY---------HTPAYTSHTPAYASNTPAYA 621
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
+ AYT + AY +LAY +PAYT +PAYT +PAY + AYT L
Sbjct: 622 SNTLAYTSHTPAYASNTLAYISHTPAYTSHTPAYTSHTPAYASNTLAYTSNTL 674
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 73/149 (48%), Gaps = 34/149 (22%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP-------AYIPVSPAYTPVSP-------A 103
+PAYT +P YT + AYT +PAYT +P AYI +PAYT +P A
Sbjct: 244 CTPAYTSHTPTYTSHTSAYTSHTPAYTSHTPSCRSHTPAYISHTPAYTSNTPVYTSRTLA 303
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS-------------------- 143
YT + AYT +PAYT +PAY +LA T +LAYT +
Sbjct: 304 YTSHTLAYTSHTPAYTSHTPAYISHTLACTSHTLAYTSHTRLTYPTPGLHVQHPGLHIQH 363
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
P YT +PAYT +PAYT + AY L
Sbjct: 364 PVYTSRTPAYTSHNPAYTSHTPAYISHTL 392
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PAY +PAYT +PAY +PAY + AY +PAY + AY +PAYT +PAY
Sbjct: 598 TPAY--HTPAYTSHTPAYASNTPAYASNTLAYTSHTPAYASNTLAYISHTPAYTSHTPAY 655
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQVIL 172
T +PAY +LAYT +LAY +PAY + A YT + AY + AY L
Sbjct: 656 TSHTPAYASNTLAYTSNTLAYASNTPAYISHTLAFYTSCTLAYISNTLAYASNTL 710
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 70/150 (46%), Gaps = 41/150 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS---------- 108
+PAYT +PAYT +PAYT +PAYT +PAY + AYT +PAY +
Sbjct: 812 TPAYTSHTPAYTSHTPAYTSHTPAYTSYTPAYASNTLAYTSHTPAYASNTLAYTSHTRLT 871
Query: 109 -----------------PAYTQVSPAYTQVS--------------PAYTQVSLAYTQVSL 137
PAYT +PAYT + PAY +LAY +
Sbjct: 872 YPTPCLHIPHPGLHIPHPAYTSHTPAYTSHTSAYASNTLAYISHTPAYASNTLAYISHTP 931
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
AYT +PAYT +PAYT + AY + AY
Sbjct: 932 AYTSHTPAYTSHTPAYTSNTLAYISHTPAY 961
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQVSPA 117
+PAYT +PAYT +PAY + AYT + AY +PAY + A YT + AY + A
Sbjct: 645 TPAYTSHTPAYTSHTPAYASNTLAYTSNTLAYASNTPAYISHTLAFYTSCTLAYISNTLA 704
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
Y + AY +LAYT +LAY + AY +PAYT + AYT + AYT L+ P
Sbjct: 705 YASNTLAYASNTLAYTSNTLAYASNTLAYASNTPAYTSNTLAYTSHTLAYTSNTLHIPHP 764
Query: 178 GRESNS 183
S++
Sbjct: 765 AYTSHT 770
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 64/144 (44%), Gaps = 43/144 (29%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS------------------ 108
P YT +PAYT +PAYT +PAYI + A T + AYT +
Sbjct: 488 PVYTSRTPAYTSHNPAYTSHTPAYISHTLACTSHTLAYTSHTWLTYPTPRLTHPTPGLHI 547
Query: 109 -----------------------PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
PAYT +PAYT +PAY +LAYT + AY +PA
Sbjct: 548 PHPSLHIQHPGLHIQHPGLHIPHPAYTSHTPAYTSHTPAYASNTLAYTSHTPAY--HTPA 605
Query: 146 YTQVSPAYTQVSPAYTQVSSAYTQ 169
YT +PAY +PAY + AYT
Sbjct: 606 YTSHTPAYASNTPAYASNTLAYTS 629
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
AYT + AYT +PAYT +PAYT +PAYT + AY + AYT +PAYT + AY
Sbjct: 67 AYTSHTLAYTSYTPAYTSHTPAYTSHNPAYTSHTQAYISHTPAYTSHNPAYTSHTQAYIS 126
Query: 156 ----VSPAYTQVSSAYTQVIL 172
+PAYT + YT L
Sbjct: 127 SYISCTPAYTSHNPVYTSHTL 147
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 53/117 (45%), Gaps = 34/117 (29%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY--------------------- 97
+PAYT +P YT + AYT + AYT +PAY +PAY
Sbjct: 287 TPAYTSNTPVYTSRTLAYTSHTLAYTSHTPAYTSHTPAYISHTLACTSHTLAYTSHTRLT 346
Query: 98 --TPV-----------SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
TP P YT +PAYT +PAYT +PAY +LA T +LAYT
Sbjct: 347 YPTPGLHVQHPGLHIQHPVYTSRTPAYTSHNPAYTSHTPAYISHTLACTSHTLAYTS 403
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA--- 117
AY +PAYT +PAYT +PAYT + AYI +PAY + +T P T +P
Sbjct: 925 AYISHTPAYTSHTPAYTSHTPAYTSNTLAYISHTPAYA-SNTRFTHPIPRLTHPTPGLHI 983
Query: 118 --------YTQVS---PAYTQVSLAYTQVSLAYTQVSPAYTQ 148
Y + PAY +LAY +LAYT +PAYT
Sbjct: 984 PHPGLHIPYPGLHIQHPAYISHTLAYISHTLAYTSHTPAYTS 1025
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYT 161
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1953
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
YT SP Y P SP Y+P SP Y+ SP Y+ +P Y+ SP Y+ S YT S Y+
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910
Query: 143 SPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP Y+ SP Y+ S
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTS 1932
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 59 SPAYTQVSPAY----TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
SP Y+ SP Y P Y+ SP Y+ +P Y P SP Y+P SP YT SP Y+
Sbjct: 1855 SPKYSPTSPKYSPTS----PKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910
Query: 115 SPAYTQVSPAYTQVSLAYTQVS---LAYTQVSPAYTQVSPAYT 154
SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1953
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1911 SPTYSPTSPKYSPTSPTYS 1929
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA---YTQVSPAYTQ 113
T SP P YT SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 1892 TYSPTS----PTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 1947
Query: 114 VSPAYT 119
SP Y+
Sbjct: 1948 TSPTYS 1953
>gi|61403404|gb|AAH91941.1| Polr2a protein [Danio rerio]
Length = 161
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 46 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 105
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQV 163
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 106 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPA 150
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
YT SP Y+ SP Y P SP Y+P SP Y+ +P Y+ SP Y+ SP YT S Y+
Sbjct: 46 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 105
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPA---YTQVSSAYTQV 170
S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 106 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 143
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 58 VSPAYTQVSPAY----TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
SP Y+ SP Y P Y+ SP Y+ +P Y P SP Y+P SP YT SP Y+
Sbjct: 49 TSPKYSPTSPKYSPTS----PKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSP 104
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLA---YTQVSPAYTQVSPAYTQV 156
SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+
Sbjct: 105 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPA 150
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA---YTQVSPAYTQ 113
T SP P YT SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 87 TYSPTS----PTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 142
Query: 114 VSPAYTQV 121
SP Y+
Sbjct: 143 TSPTYSPA 150
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYT 161
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1959
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
YT SP Y P SP Y+P SP Y+ SP Y+ +P Y+ SP Y+ S YT S Y+
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916
Query: 143 SPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP Y+ SP Y+ S
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTS 1938
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 59 SPAYTQVSPAY----TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
SP Y+ SP Y P Y+ SP Y+ +P Y P SP Y+P SP YT SP Y+
Sbjct: 1861 SPKYSPTSPKYSPTS----PKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916
Query: 115 SPAYTQVSPAYTQVSLAYTQVS---LAYTQVSPAYTQVSPAYT 154
SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1959
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1917 SPTYSPTSPKYSPTSPTYS 1935
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA---YTQVSPAYTQ 113
T SP P YT SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 1898 TYSPTS----PTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 1953
Query: 114 VSPAYT 119
SP Y+
Sbjct: 1954 TSPTYS 1959
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
Length = 1921
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYT 161
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1908
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
YT SP Y P SP Y+P SP Y+ SP Y+ +P Y+ SP Y+ S YT S Y+
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865
Query: 143 SPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP Y+ SP Y+ S
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTS 1887
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 59 SPAYTQVSPAY----TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
SP Y+ SP Y P Y+ SP Y+ +P Y P SP Y+P SP YT SP Y+
Sbjct: 1810 SPKYSPTSPKYSPTS----PKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865
Query: 115 SPAYTQVSPAYTQVSLAYTQVS---LAYTQVSPAYTQVSPAYT 154
SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1908
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1866 SPTYSPTSPKYSPTSPTYS 1884
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA---YTQVSPAYTQ 113
T SP P YT SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 1847 TYSPTS----PTYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 1902
Query: 114 VSPAYT 119
SP Y+
Sbjct: 1903 TSPTYS 1908
>gi|291229193|ref|XP_002734560.1| PREDICTED: ubiquitin specific peptidase 15-like [Saccoglossus
kowalevskii]
Length = 678
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP+Y SP+Y P+Y SP+Y SP+Y SP+Y SP+Y SP+Y SP+Y
Sbjct: 401 SPSYEAASPSYEAALPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSY 460
Query: 119 TQVSPAYTQVSLAY 132
SP+Y S +Y
Sbjct: 461 EAASPSYEAASPSY 474
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
+ SP+Y SP+Y P+Y SP+Y SP+Y SP+Y SP+Y SP+Y S
Sbjct: 398 SAASPSYEAASPSYEAALPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSYEAAS 457
Query: 123 PAYTQVSLAYTQVSLAY 139
P+Y S +Y S +Y
Sbjct: 458 PSYEAASPSYEAASPSY 474
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
+ SP+Y SP+Y P+Y SP+Y SP+Y SP+Y SP+Y SP+Y S
Sbjct: 398 SAASPSYEAASPSYEAALPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSYEAAS 457
Query: 130 LAYTQVSLAYTQVSPAY 146
+Y S +Y SP+Y
Sbjct: 458 PSYEAASPSYEAASPSY 474
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 77 TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
+ SP+Y SP+Y P+Y SP+Y SP+Y SP+Y SP+Y S +Y S
Sbjct: 398 SAASPSYEAASPSYEAALPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSYEAAS 457
Query: 137 LAYTQVSPAYTQVSPAY 153
+Y SP+Y SP+Y
Sbjct: 458 PSYEAASPSYEAASPSY 474
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
+ SP+Y SP+Y P+Y SP+Y SP+Y SP+Y S +Y S +Y S
Sbjct: 398 SAASPSYEAASPSYEAALPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSYEAAS 457
Query: 144 PAYTQVSPAYTQVSPAY 160
P+Y SP+Y SP+Y
Sbjct: 458 PSYEAASPSYEAASPSY 474
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
SP+Y SP+Y P+Y SP+Y SP+Y S +Y S +Y SP+Y SP+Y
Sbjct: 401 SPSYEAASPSYEAALPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSY 460
Query: 154 TQVSPAYTQVSSAY 167
SP+Y S +Y
Sbjct: 461 EAASPSYEAASPSY 474
Score = 63.2 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
+ SP+Y SP+Y P+Y SP+Y S +Y S +Y SP+Y SP+Y S
Sbjct: 398 SAASPSYEAASPSYEAALPSYEAASPSYEAASPSYEAASPSYEAASPSYEAASPSYEAAS 457
Query: 158 PAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHEW 195
P+Y S +Y + P ++ ++ +F++W
Sbjct: 458 PSYEAASPSYEAASPSYETPLKKGDTWYLVDSRWFNKW 495
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAY----TQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ SP ++ SP++ SPAY+ SP Y + SP+Y P SP +P SP Y+ SP Y
Sbjct: 1580 FMSSPGFSPTSPSFAPTSPAYSPTSPMYAAGASPTSPSYSPTSPGRSPTSPNYSPTSPTY 1639
Query: 112 TQVSP-AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP A++ SP Y+ S A + SP SP YT SP
Sbjct: 1640 SPTSPAAFSPSSPNYSPTSPALGGAGRHLSPTSP----TSPKYTPTSP 1683
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SPA SP + SP ++ SP++ P SPAY+P SP Y + + SP+Y+ SP
Sbjct: 1570 SPAIGITSPRFMS-SPGFSPTSPSFAPTSPAYSPTSPMY---AAGASPTSPSYSPTSPGR 1625
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ S P Y+ SP Y+ SPA SS
Sbjct: 1626 SPTS--------------PNYSPTSPTYSPTSPAAFSPSS 1651
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SPA SP ++ SP ++P SP++ SPAY+ SP Y + + S +Y
Sbjct: 1570 SPAIGITSPRFMS-SPGFSPTSPSFAPTSPAYSPTSPMY----------AAGASPTSPSY 1618
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP + SP Y+ SP Y+ S A
Sbjct: 1619 SPTSPGRSPTSPNYSPTSPTYSPTSPA 1645
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 43/76 (56%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T S Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P
Sbjct: 1826 TGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVP 1885
Query: 117 AYTQVSPAYTQVSLAY 132
Y+ SP Y+ S AY
Sbjct: 1886 GYSPTSPTYSPASPAY 1901
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T S Y+ SP Y+ SP Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+
Sbjct: 1825 TTGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1884
Query: 123 PAYTQVSLAYTQVSLAY 139
P Y+ S Y+ S AY
Sbjct: 1885 PGYSPTSPTYSPASPAY 1901
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
T S Y+ SP Y+ SP Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+
Sbjct: 1825 TTGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1884
Query: 130 LAYTQVSLAYTQVSPAY 146
Y+ S Y+ SPAY
Sbjct: 1885 PGYSPTSPTYSPASPAY 1901
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 77 TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
T S Y+ SP Y P SP Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+
Sbjct: 1825 TTGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1884
Query: 137 LAYTQVSPAYTQVSPAY 153
Y+ SP Y+ SPAY
Sbjct: 1885 PGYSPTSPTYSPASPAY 1901
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T S Y P SP Y+P SP Y+ SP Y+ S Y+ SP YT S +Y+ S Y+
Sbjct: 1825 TTGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1884
Query: 144 PAYTQVSPAYTQVSPAY 160
P Y+ SP Y+ SPAY
Sbjct: 1885 PGYSPTSPTYSPASPAY 1901
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S Y+P SP Y+ SP Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y
Sbjct: 1828 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1887
Query: 154 TQVSPAYTQVSSAY 167
+ SP Y+ S AY
Sbjct: 1888 SPTSPTYSPASPAY 1901
Score = 43.1 bits (100), Expect = 0.078, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1582 SPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYSP 1622
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 119 TQVSPAYTQVSLAY 132
+ SP Y+ S AY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
S Y+ SP Y+ SP Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+ P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 126 TQVSLAYTQVSLAY 139
+ S Y+ S AY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
S Y+ SP Y+ SP Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+ Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 133 TQVSLAYTQVSPAY 146
+ S Y+ SPAY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
S Y+ SP Y P SP Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+ Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 140 TQVSPAYTQVSPAY 153
+ SP Y+ SPAY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
S Y P SP Y+P SP Y+ SP Y+ S Y+ SP YT S +Y+ S Y+ P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 147 TQVSPAYTQVSPAY 160
+ SP Y+ SPAY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S Y+P SP Y+ SP Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 154 TQVSPAYTQVSSAY 167
+ SP Y+ S AY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
S Y+ SP Y+ SP Y+ SP Y+ S Y+ S YT SP+Y+ SP Y+ P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 161 TQVSSAYT 168
+ S Y+
Sbjct: 1889 SPTSPTYS 1896
Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1583 SPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYSP 1623
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 119 TQVSPAYTQVSLAY 132
+ SP Y+ S AY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T S Y+ SP Y+ SP Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+
Sbjct: 1826 TSGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1885
Query: 123 PAYTQVSLAYTQVSLAY 139
P Y+ S Y+ S AY
Sbjct: 1886 PGYSPTSPTYSPASPAY 1902
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
T S Y+ SP Y+ SP Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+
Sbjct: 1826 TSGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1885
Query: 130 LAYTQVSLAYTQVSPAY 146
Y+ S Y+ SPAY
Sbjct: 1886 PGYSPTSPTYSPASPAY 1902
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 77 TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
T S Y+ SP Y P SP Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+
Sbjct: 1826 TSGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1885
Query: 137 LAYTQVSPAYTQVSPAY 153
Y+ SP Y+ SPAY
Sbjct: 1886 PGYSPTSPTYSPASPAY 1902
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 42/77 (54%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T S Y P SP Y+P SP Y+ SP Y+ S Y+ SP YT S +Y+ S Y+
Sbjct: 1826 TSGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPV 1885
Query: 144 PAYTQVSPAYTQVSPAY 160
P Y+ SP Y+ SPAY
Sbjct: 1886 PGYSPTSPTYSPASPAY 1902
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S Y+P SP Y+ SP Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888
Query: 154 TQVSPAYTQVSSAY 167
+ SP Y+ S AY
Sbjct: 1889 SPTSPTYSPASPAY 1902
Score = 43.1 bits (100), Expect = 0.071, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1583 SPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYSP 1623
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P Y
Sbjct: 1827 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1886
Query: 119 TQVSPAYTQVSLAY 132
+ SP Y+ S AY
Sbjct: 1887 SPTSPTYSPASPAY 1900
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
S Y+ SP Y+ SP Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+ P Y
Sbjct: 1827 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1886
Query: 126 TQVSLAYTQVSLAY 139
+ S Y+ S AY
Sbjct: 1887 SPTSPTYSPASPAY 1900
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
S Y+ SP Y+ SP Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+ Y
Sbjct: 1827 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1886
Query: 133 TQVSLAYTQVSPAY 146
+ S Y+ SPAY
Sbjct: 1887 SPTSPTYSPASPAY 1900
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
S Y+ SP Y P SP Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+ Y
Sbjct: 1827 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1886
Query: 140 TQVSPAYTQVSPAY 153
+ SP Y+ SPAY
Sbjct: 1887 SPTSPTYSPASPAY 1900
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
S Y P SP Y+P SP Y+ SP Y+ S Y+ SP YT S +Y+ S Y+ P Y
Sbjct: 1827 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1886
Query: 147 TQVSPAYTQVSPAY 160
+ SP Y+ SPAY
Sbjct: 1887 SPTSPTYSPASPAY 1900
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S Y+P SP Y+ SP Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y
Sbjct: 1827 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1886
Query: 154 TQVSPAYTQVSSAY 167
+ SP Y+ S AY
Sbjct: 1887 SPTSPTYSPASPAY 1900
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
S Y+ SP Y+ SP Y+ SP Y+ S Y+ S YT SP+Y+ SP Y+ P Y
Sbjct: 1827 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1886
Query: 161 TQVSSAYT 168
+ S Y+
Sbjct: 1887 SPTSPTYS 1894
Score = 43.1 bits (100), Expect = 0.077, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1581 SPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSP 1621
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1599 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1658
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPA------YTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ + S Y+ SPA Y+ SP Y+ SPAY+ S AY+
Sbjct: 1659 SPASPRYSPTPAQMSPTSPKYSPTSPASPASPRYSPTSPTYSPASPAYSPASPAYS 1714
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA SP Y+ SP Y+ SP+++ SP Y P SP+++P SP Y+ SP+++ SP Y
Sbjct: 1606 SPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRY 1665
Query: 119 -------TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ SP Y+ S A + S Y+ SP Y+ SPAY+ SPAY+ S ++
Sbjct: 1666 SPTPAQMSPTSPKYSPTSPA-SPASPRYSPTSPTYSPASPAYSPASPAYSPTSPQWSPSS 1724
Query: 172 LNKIRPGRESNSRSSAY 188
+ + G S +R +Y
Sbjct: 1725 PAQNQNGSSSTNRGHSY 1741
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 20/130 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ----- 113
SP Y+ SP Y+ SP+++ SP Y+ SP++ P SP Y+P SP+++ SP Y+
Sbjct: 1613 SPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTPAQM 1672
Query: 114 ---------------VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP Y+ SP Y+ S AY+ S AY+ SP ++ SPA Q
Sbjct: 1673 SPTSPKYSPTSPASPASPRYSPTSPTYSPASPAYSPASPAYSPTSPQWSPSSPAQNQNGS 1732
Query: 159 AYTQVSSAYT 168
+ T +Y+
Sbjct: 1733 SSTNRGHSYS 1742
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 9/109 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQV-------SPAYIPVSPAYTPVSPAYTQVSPAY 111
SP+++ SP Y+ SP+++ SP Y+ SP Y P SPA +P SP Y+ SP Y
Sbjct: 1641 SPSFSPTSPRYSPTSPSFSPASPRYSPTPAQMSPTSPKYSPTSPA-SPASPRYSPTSPTY 1699
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SPAY+ SPAY+ S ++ S A Q + T +Y+ SP++
Sbjct: 1700 SPASPAYSPASPAYSPTSPQWSPSSPAQNQNGSSSTNRGHSYS-TSPSW 1747
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 56 YTVSPA-YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
Y+ +PA + SP Y+ SPA + SP Y+ SP Y P SPAY+P SPAY+ SP ++
Sbjct: 1665 YSPTPAQMSPTSPKYSPTSPA-SPASPRYSPTSPTYSPASPAYSPASPAYSPTSPQWSPS 1723
Query: 115 SPAYTQVSPAYTQVSLAYT 133
SPA Q + T +Y+
Sbjct: 1724 SPAQNQNGSSSTNRGHSYS 1742
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 59 SPAYTQVSPAYTQ---VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP SP T SP Y + ++ SP Y P SPA SP Y+ SP Y+ S
Sbjct: 1571 SPFTGGTSPMGTSPYATSPFYDR---SHGATSPTYSPTSPALNLTSPGYSPTSPRYSPTS 1627
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT----QVSP 158
P+++ SP Y+ S +++ S Y+ SP+++ SP Y+ Q+SP
Sbjct: 1628 PSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTPAQMSP 1674
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 65 VSPAYTQVSPAYTQVSP-AYTQVSPAYIPVSPAYTPVSPAYTQ---VSPAYTQ----VSP 116
+SPA +P Y+ SP AY+ SP Y+ SP SP T SP Y + SP
Sbjct: 1546 MSPA----APGYSPSSPNAYSPTSP-YLAQSPFTGGTSPMGTSPYATSPFYDRSHGATSP 1600
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPA S Y+ S Y+ SP+++ SP Y+ SP+++ S Y+
Sbjct: 1601 TYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYS 1652
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P Y
Sbjct: 1816 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1875
Query: 119 TQVSPAYTQVSLAY 132
+ SP Y+ S AY
Sbjct: 1876 SPTSPTYSPASPAY 1889
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
S Y+ SP Y+ SP Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+ P Y
Sbjct: 1816 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1875
Query: 126 TQVSLAYTQVSLAY 139
+ S Y+ S AY
Sbjct: 1876 SPTSPTYSPASPAY 1889
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
S Y+ SP Y+ SP Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+ Y
Sbjct: 1816 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1875
Query: 133 TQVSLAYTQVSPAY 146
+ S Y+ SPAY
Sbjct: 1876 SPTSPTYSPASPAY 1889
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
S Y+ SP Y P SP Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+ Y
Sbjct: 1816 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1875
Query: 140 TQVSPAYTQVSPAY 153
+ SP Y+ SPAY
Sbjct: 1876 SPTSPTYSPASPAY 1889
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
S Y P SP Y+P SP Y+ SP Y+ S Y+ SP YT S +Y+ S Y+ P Y
Sbjct: 1816 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1875
Query: 147 TQVSPAYTQVSPAY 160
+ SP Y+ SPAY
Sbjct: 1876 SPTSPTYSPASPAY 1889
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S Y+P SP Y+ SP Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y
Sbjct: 1816 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1875
Query: 154 TQVSPAYTQVSSAY 167
+ SP Y+ S AY
Sbjct: 1876 SPTSPTYSPASPAY 1889
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
S Y+ SP Y+ SP Y+ SP Y+ S Y+ S YT SP+Y+ SP Y+ P Y
Sbjct: 1816 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1875
Query: 161 TQVSSAYT 168
+ S Y+
Sbjct: 1876 SPTSPTYS 1883
Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1581 SPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSP 1621
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P Y
Sbjct: 1825 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1884
Query: 119 TQVSPAYTQVSLAY 132
+ SP Y+ S AY
Sbjct: 1885 SPTSPTYSPASPAY 1898
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
S Y+ SP Y+ SP Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+ P Y
Sbjct: 1825 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1884
Query: 126 TQVSLAYTQVSLAY 139
+ S Y+ S AY
Sbjct: 1885 SPTSPTYSPASPAY 1898
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
S Y+ SP Y+ SP Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+ Y
Sbjct: 1825 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1884
Query: 133 TQVSLAYTQVSPAY 146
+ S Y+ SPAY
Sbjct: 1885 SPTSPTYSPASPAY 1898
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
S Y+ SP Y P SP Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+ Y
Sbjct: 1825 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1884
Query: 140 TQVSPAYTQVSPAY 153
+ SP Y+ SPAY
Sbjct: 1885 SPTSPTYSPASPAY 1898
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
S Y P SP Y+P SP Y+ SP Y+ S Y+ SP YT S +Y+ S Y+ P Y
Sbjct: 1825 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1884
Query: 147 TQVSPAYTQVSPAY 160
+ SP Y+ SPAY
Sbjct: 1885 SPTSPTYSPASPAY 1898
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S Y+P SP Y+ SP Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y
Sbjct: 1825 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1884
Query: 154 TQVSPAYTQVSSAY 167
+ SP Y+ S AY
Sbjct: 1885 SPTSPTYSPASPAY 1898
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
S Y+ SP Y+ SP Y+ SP Y+ S Y+ S YT SP+Y+ SP Y+ P Y
Sbjct: 1825 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1884
Query: 161 TQVSSAYT 168
+ S Y+
Sbjct: 1885 SPTSPTYS 1892
Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1581 SPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSP 1621
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P Y
Sbjct: 1806 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1865
Query: 119 TQVSPAYTQVSLAY 132
+ SP Y+ S AY
Sbjct: 1866 SPTSPTYSPASPAY 1879
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
S Y+ SP Y+ SP Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+ P Y
Sbjct: 1806 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1865
Query: 126 TQVSLAYTQVSLAY 139
+ S Y+ S AY
Sbjct: 1866 SPTSPTYSPASPAY 1879
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
S Y+ SP Y+ SP Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+ Y
Sbjct: 1806 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1865
Query: 133 TQVSLAYTQVSPAY 146
+ S Y+ SPAY
Sbjct: 1866 SPTSPTYSPASPAY 1879
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
S Y+ SP Y P SP Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+ Y
Sbjct: 1806 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1865
Query: 140 TQVSPAYTQVSPAY 153
+ SP Y+ SPAY
Sbjct: 1866 SPTSPTYSPASPAY 1879
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
S Y P SP Y+P SP Y+ SP Y+ S Y+ SP YT S +Y+ S Y+ P Y
Sbjct: 1806 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1865
Query: 147 TQVSPAYTQVSPAY 160
+ SP Y+ SPAY
Sbjct: 1866 SPTSPTYSPASPAY 1879
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S Y+P SP Y+ SP Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y
Sbjct: 1806 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1865
Query: 154 TQVSPAYTQVSSAY 167
+ SP Y+ S AY
Sbjct: 1866 SPTSPTYSPASPAY 1879
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
S Y+ SP Y+ SP Y+ SP Y+ S Y+ S YT SP+Y+ SP Y+ P Y
Sbjct: 1806 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1865
Query: 161 TQVSSAYT 168
+ S Y+
Sbjct: 1866 SPTSPTYS 1873
Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1560 SPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYSP 1600
>gi|429964462|gb|ELA46460.1| hypothetical protein VCUG_02055 [Vavraia culicis 'floridensis']
Length = 1583
Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 21/134 (15%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQV-SPAYTQVSPAYIPVSPAYTPVSPAYT 105
S + T +SP ++ +P YT VSP Y++V SP Y+ SP+Y+P SP Y P++ Y
Sbjct: 1441 SPESGTGTDGVLSP--SRYTPRYTPVSPTYSRVTSPVYSPKSPSYMPTSPKYVPMNAKYA 1498
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA-YTQVSPAYTQVS 164
S Y+ SP Y+ SP Y +P YT SP Y++ +P+Y+ S
Sbjct: 1499 LGSSRYSPTSPTYSPDSPRY-----------------NPGYTAGSPQYYSRANPSYSPTS 1541
Query: 165 SAYTQVILNKIRPG 178
Y + PG
Sbjct: 1542 VRYYSPTSTRYVPG 1555
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
+P YTPVSP Y++V+ SP Y+ SP+Y S Y ++ Y S Y+ SP Y
Sbjct: 1458 TPRYTPVSPTYSRVT------SPVYSPKSPSYMPTSPKYVPMNAKYALGSSRYSPTSPTY 1511
Query: 154 TQVSPAYTQVSSAYTQVILNKIRPGRESNS 183
+ SP Y +A + ++ P S
Sbjct: 1512 SPDSPRYNPGYTAGSPQYYSRANPSYSPTS 1541
Score = 40.8 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
++P S T + ++ +P YT VSP Y++V+ S Y+ SP+Y SP Y +
Sbjct: 1440 WSPESGTGTDGVLSPSRYTPRYTPVSPTYSRVT------SPVYSPKSPSYMPTSPKYVPM 1493
Query: 157 SPAYTQVSSAYT 168
+ Y SS Y+
Sbjct: 1494 NAKYALGSSRYS 1505
Score = 39.7 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
L + T T SP + +P YT SP Y Y++ +P+Y P S Y SP T
Sbjct: 1499 LGSSRYSPTSPTYSPDSPRYNPGYTAGSPQY------YSRANPSYSPTSVRY--YSPTST 1550
Query: 106 QVSPAYTQVSPAYTQVSP 123
+ P VSP Y SP
Sbjct: 1551 RYVPG--GVSPLYGPASP 1566
>gi|73958386|ref|XP_547025.2| PREDICTED: zinc finger protein 768 isoform 1 [Canis lupus
familiaris]
Length = 554
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 64/160 (40%), Gaps = 17/160 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPGFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPDSDSQSPEFEPQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y S Y SP Y SP Y SP Y + +
Sbjct: 122 EPQSPGYEPRSPGYEPKSPGYEPKSPGYEPRSPGYESQSPGYEPQNPEF----------- 170
Query: 179 RESNSRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVH 215
++S +EA F E M P+ L I +GVH
Sbjct: 171 ---KTQSPEFEAQSSKFEEGAEMLLNPEEKSPLSIPLGVH 207
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 14/125 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA SP Y+ SP Y+ SP+++ SP Y P SP+++P SP Y+ SP+++ SP Y
Sbjct: 1608 SPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRY 1667
Query: 119 TQVSPAYTQ--------------VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SPA S Y+ S AY+ SPAY+ SPAY+ SP ++ S
Sbjct: 1668 SPTSPAQMSPTSPKYSPTSPTSPASPRYSPTSPAYSPTSPAYSPASPAYSPTSPQWSPSS 1727
Query: 165 SAYTQ 169
A Q
Sbjct: 1728 PAQNQ 1732
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1601 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1660
Query: 119 TQVSPAYTQVSLAYTQ--------------VSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SP Y+ S A S Y+ SPAY+ SPAY+ SPAY+ S
Sbjct: 1661 SPASPRYSPTSPAQMSPTSPKYSPTSPTSPASPRYSPTSPAYSPTSPAYSPASPAYSPTS 1720
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP Y + ++ SP Y P SPA SP Y+ SP Y+ SP+++ SP Y+ S ++
Sbjct: 1590 SPFYDR---SHGATSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSF 1646
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ S Y+ SP+++ SP Y+ SPA
Sbjct: 1647 SPTSPRYSPTSPSFSPASPRYSPTSPA 1673
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ + Y SP SP T SP Y + A SP Y+P SPA SP
Sbjct: 1561 NAYSPTSPYLAQSPFAGATSPMGTSPYATSPFYDRSHGA---TSPTYSPTSPALNLTSPG 1617
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP Y+ S A
Sbjct: 1618 YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPA 1673
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 54 TVYTVSP--AYTQVSPAYTQVSPAYTQVSP-AYTQVSP--AYIPVSPAYTPVSPAYTQVS 108
T + +SP A+ +SPA SP+ SP AY+ SP A P + A +P+ + S
Sbjct: 1535 TGFGISPMGAHGAMSPAGAGYSPS----SPNAYSPTSPYLAQSPFAGATSPMGTSPYATS 1590
Query: 109 PAYTQ----VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
P Y + SP Y+ SPA S Y+ S Y+ SP+++ SP Y+ SP+++ S
Sbjct: 1591 PFYDRSHGATSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTS 1650
Query: 165 SAYT 168
Y+
Sbjct: 1651 PRYS 1654
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPAYT 112
+ SP ++ VSP++ SPAY+ SPAY Q SP +Y P SP ++P SP Y+ SP+++
Sbjct: 1607 FMTSPGFSPVSPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFS 1666
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SPA++ SP+Y+ S A + SP SP YT SP ++ S
Sbjct: 1667 PASPAFSPTSPSYSPTSPAIGGAGRHLSPTSP----TSPKYTPTSPGWSPTS 1714
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV- 114
Y+ + +Y+ ++P T SP + SP + SP + PVSP++ P SPAY+ SPAY Q
Sbjct: 1583 YSPTTSYSPIAPGIT--SPRFN-TSPGF-MTSPGFSPVSPSFAPTSPAYSPTSPAYGQAS 1638
Query: 115 --SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ SP ++ S Y+ S +++ SPA++ SP+Y+ SPA
Sbjct: 1639 PTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPA 1685
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 9/110 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ + +Y+ ++P T SP + SP ++ SP ++PVSP++ SPAY+ SPAY
Sbjct: 1580 SPGYSPTT-SYSPIAPGIT--SPRFN-TSPGFM-TSPGFSPVSPSFAPTSPAYSPTSPAY 1634
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Q SP S +Y+ S ++ SP Y+ SP+++ SPA++ S +Y+
Sbjct: 1635 GQASP----TSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYS 1680
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----------S 108
SP+Y+ SP ++ SP Y+ SP+++ SPA+ P SP+Y+P SPA S
Sbjct: 1641 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTS 1700
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P YT SP ++ SP + + T + A + SP SP Y+ SPA++
Sbjct: 1701 PKYTPTSPGWSPTSPQ----TYSPTSPNFAGSPTSPG-GPTSPGYSPTSPAFS 1748
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 23/99 (23%)
Query: 73 SPAYTQVSPA-YTQVSP-AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
SPA T SPA Y+ SP + P SP Y+P + +Y+ ++P T SP + SP +
Sbjct: 1559 SPAAT--SPAGYSPTSPFSANPTSPGYSPTT-SYSPIAPGIT--SPRFN-TSPGF----- 1607
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SP ++ VSP++ SPAY+ S AY Q
Sbjct: 1608 ----------MTSPGFSPVSPSFAPTSPAYSPTSPAYGQ 1636
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS---LAY 139
YT SP Y P SP YTP SP Y+ SP+YT +P Y+ SP Y+ S Y+ S Y
Sbjct: 1843 YTPTSPKYSPASPTYTPTSPKYSPTSPSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTY 1902
Query: 140 TQVSPAYTQVSPAYTQVSP 158
+ +P Y+ SP Y+ SP
Sbjct: 1903 SPTTPGYSPASPTYSPESP 1921
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP---AY 153
YTP SP Y+ SP YT SP Y+ SP+YT + Y+ S Y+ SP Y+ SP Y
Sbjct: 1843 YTPTSPKYSPASPTYTPTSPKYSPTSPSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTY 1902
Query: 154 TQVSPAYTQVSSAYT 168
+ +P Y+ S Y+
Sbjct: 1903 SPTTPGYSPASPTYS 1917
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP---AYTPVSPAYTQVSPA 110
T SP Y+ SP+YT +P Y+ SP Y+ SP Y P SP Y+P +P Y+ SP
Sbjct: 1856 TYTPTSPKYSPTSPSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTYSPTTPGYSPASPT 1915
Query: 111 YTQVSP 116
Y+ SP
Sbjct: 1916 YSPESP 1921
>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
Length = 1935
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP ++ SP Y+ SP Y+ P Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1818 YTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1877
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1878 SPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1927
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ P Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1829 SPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPQY 1888
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1889 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1927
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1866 VYTPTSPKYSPTSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1925
Query: 111 YT 112
+
Sbjct: 1926 IS 1927
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1604 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1663
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQ---------VSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SP Y+ S A Q+S A + SP Y+ SP Y+ SPAY+ S AY
Sbjct: 1664 SPASPRYSPTSPA--QMSPASPKYSPTSPVSPASPKYSPTSPTYSPASPAYSPASPAY 1719
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
VY+ + Y SP SP T SP Y + + P SP Y+P SPA SP
Sbjct: 1564 NVYSPTSPYVPQSPFAGATSPFGTSPYATSPFYDR---SRGPTSPTYSPTSPALNLTSPG 1620
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP Y+ S A
Sbjct: 1621 YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPA 1676
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 27/126 (21%)
Query: 65 VSPAYTQVSPAYTQVSP-AYTQVSPAYIPVSP---------------------AYTPVSP 102
+SPA +P Y+ SP Y+ SP Y+P SP + P SP
Sbjct: 1551 MSPA----APGYSPSSPNVYSPTSP-YVPQSPFAGATSPFGTSPYATSPFYDRSRGPTSP 1605
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SPA SP Y+ SP Y+ S +++ S Y+ SP+++ SP Y+ SP+++
Sbjct: 1606 TYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSP 1665
Query: 163 VSSAYT 168
S Y+
Sbjct: 1666 ASPRYS 1671
>gi|226822888|gb|ACJ54148.1| RNA polymerase II [Plasmodium falciparum]
Length = 223
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 12/132 (9%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 36 MSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 95
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSP-----------AYTQVSPAYTQVSPAYTQVSSA 166
Y+ SP Y+ S Y+ S Y+ SP Y+ SP ++ SPAY+ S
Sbjct: 96 YSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPV 155
Query: 167 YTQV-ILNKIRP 177
Y + ++N +P
Sbjct: 156 YDKSGVVNAHQP 167
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 55 VYTV-SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
VY+V SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 39 VYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSP 98
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSL-----------AYTQVSPAYTQVSPAYTQVSPAYTQ 162
SP Y+ SP Y+ S Y+ S Y+ SP ++ SPAY+ SP Y +
Sbjct: 99 TSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDK 158
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 33 YNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPT 92
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSP-----------AYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP ++ S AY+
Sbjct: 93 SPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYS 150
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 32/121 (26%)
Query: 76 YTQVSPAYTQ--------------------------------VSPAYIPVSPAYTPVSPA 103
Y+ SP Y SP Y P SP Y+P SP
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPT 120
Query: 164 S 164
S
Sbjct: 121 S 121
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP-----------AYTQ 106
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+
Sbjct: 78 TSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSI 137
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP ++ SPAY+ SP Y + + V A+ +SPAY SP
Sbjct: 138 TSPKFSPTSPAYSISSPVYDK-----SGVVNAHQPMSPAYILQSP 177
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 25/97 (25%)
Query: 97 YTPVSPAYTQ-------------------------VSPAYTQVSPAYTQVSPAYTQVSLA 131
Y+P SP Y +SP Y+ SP Y+ SP Y+ S
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYS 97
>gi|225405453|ref|ZP_03760642.1| hypothetical protein CLOSTASPAR_04673, partial [Clostridium
asparagiforme DSM 15981]
gi|225043017|gb|EEG53263.1| hypothetical protein CLOSTASPAR_04673 [Clostridium asparagiforme
DSM 15981]
Length = 566
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 52/132 (39%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y S AYT +PAY SPAY SP Y SP YT SP YT S Y SP Y
Sbjct: 168 SRDYHDRSEAYTDGTPAYADGSPAYADDSPVYADDSPVYTDDSPVYTDDSSVYADDSPVY 227
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
T SPAY S Y S Y SP Y +P + + + R
Sbjct: 228 TDDSPAYADDSRVYADDSRVYADDSPVYPGEAPVWDERDDEQDGRQNGVQNCDRQYNRQN 287
Query: 179 RESNSRSSAYEA 190
R S YE
Sbjct: 288 SGMAGRRSGYEG 299
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 44 DYLSTDEDEATVYTVS-PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
+Y ++ D +Y P Y + S Y S Y S AYT +PAY SPAY SP
Sbjct: 138 EYGGSEPDSEGMYAGKVPNYDRESRDYGYESRDYHDRSEAYTDGTPAYADGSPAYADDSP 197
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
Y SP YT SP YT S Y S YT S AY S Y S Y SP Y
Sbjct: 198 VYADDSPVYTDDSPVYTDDSSVYADDSPVYTDDSPAYADDSRVYADDSRVYADDSPVY 255
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 45/106 (42%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y P Y + S Y S Y S AY +PAY SPAY SP Y SP YT
Sbjct: 150 YAGKVPNYDRESRDYGYESRDYHDRSEAYTDGTPAYADGSPAYADDSPVYADDSPVYTDD 209
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT S Y S YT SPAY S Y S Y S Y
Sbjct: 210 SPVYTDDSSVYADDSPVYTDDSPAYADDSRVYADDSRVYADDSPVY 255
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 32/75 (42%)
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
P Y S Y S Y S AYT +PAY S AY S Y SP YT SP YT
Sbjct: 155 PNYDRESRDYGYESRDYHDRSEAYTDGTPAYADGSPAYADDSPVYADDSPVYTDDSPVYT 214
Query: 155 QVSPAYTQVSSAYTQ 169
S Y S YT
Sbjct: 215 DDSSVYADDSPVYTD 229
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 29/66 (43%)
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
Y P Y + S Y S Y S AYT + AY SPAY SP Y SP YT
Sbjct: 150 YAGKVPNYDRESRDYGYESRDYHDRSEAYTDGTPAYADGSPAYADDSPVYADDSPVYTDD 209
Query: 164 SSAYTQ 169
S YT
Sbjct: 210 SPVYTD 215
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP ++ SP++ SPAY+ SPAY Q SP +Y P SP ++P SP Y+ SP+++
Sbjct: 1601 STSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSP 1660
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SPA++ SP+Y+ S A V + SP SP YT SP ++ S
Sbjct: 1661 ASPAFSPTSPSYSPTSPAVGGVGRHLSPTSP----TSPKYTPTSPGWSPTS 1707
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP + SP ++ SP++ P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y
Sbjct: 1596 SPRFMSTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ S +++ SPA++ SP+Y+ SPA V
Sbjct: 1652 SPTSPSFSPASPAFSPTSPSYSPTSPAVGGVG 1683
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP + SP + P SP++ P SPAY+ SPAY Q SP SP+Y+ S ++ S Y
Sbjct: 1596 SPRFMSTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ SP+++ SPA++ SP+Y+ S A V
Sbjct: 1652 SPTSPSFSPASPAFSPTSPSYSPTSPAVGGV 1682
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 29/129 (22%)
Query: 59 SPAYTQVSPAYTQVSP---AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPAY+ SPAY Q SP +Y+ SP ++ SP Y P SP+++P SPA++ SP+Y+ S
Sbjct: 1617 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTS 1676
Query: 116 PAYTQV----------SPAYTQVSLAYTQVS-LAYTQVSP---------------AYTQV 149
PA V SP YT S ++ S Y+ SP Y+
Sbjct: 1677 PAVGGVGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPT 1736
Query: 150 SPAYTQVSP 158
SPA++ SP
Sbjct: 1737 SPAFSPTSP 1745
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus kawachii
IFO 4308]
Length = 1747
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP ++ SP++ SPAY+ SPAY Q SP +Y P SP ++P SP Y+ SP+++
Sbjct: 1601 STSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSP 1660
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SPA++ SP+Y+ S A V + SP SP YT SP ++ S
Sbjct: 1661 ASPAFSPTSPSYSPTSPAVGGVGRHLSPTSP----TSPKYTPTSPGWSPTS 1707
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP + SP ++ SP++ P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y
Sbjct: 1596 SPRFMSTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ S +++ SPA++ SP+Y+ SPA V
Sbjct: 1652 SPTSPSFSPASPAFSPTSPSYSPTSPAVGGVG 1683
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP + SP + P SP++ P SPAY+ SPAY Q SP SP+Y+ S ++ S Y
Sbjct: 1596 SPRFMSTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ SP+++ SPA++ SP+Y+ S A V
Sbjct: 1652 SPTSPSFSPASPAFSPTSPSYSPTSPAVGGV 1682
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 29/129 (22%)
Query: 59 SPAYTQVSPAYTQVSP---AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPAY+ SPAY Q SP +Y+ SP ++ SP Y P SP+++P SPA++ SP+Y+ S
Sbjct: 1617 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTS 1676
Query: 116 PAYTQV----------SPAYTQVSLAYTQVS-LAYTQVSP---------------AYTQV 149
PA V SP YT S ++ S Y+ SP Y+
Sbjct: 1677 PAVGGVGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPT 1736
Query: 150 SPAYTQVSP 158
SPA++ SP
Sbjct: 1737 SPAFSPTSP 1745
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP ++ SP++ SPAY+ SPAY Q SP +Y P SP ++P SP Y+ SP+++
Sbjct: 1601 STSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSP 1660
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SPA++ SP+Y+ S A V + SP SP YT SP ++ S
Sbjct: 1661 ASPAFSPTSPSYSPTSPAVGGVGRHLSPTSP----TSPKYTPTSPGWSPTS 1707
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP + SP ++ SP++ P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y
Sbjct: 1596 SPRFMSTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ S +++ SPA++ SP+Y+ SPA V
Sbjct: 1652 SPTSPSFSPASPAFSPTSPSYSPTSPAVGGVG 1683
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP + SP + P SP++ P SPAY+ SPAY Q SP SP+Y+ S ++ S Y
Sbjct: 1596 SPRFMSTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ SP+++ SPA++ SP+Y+ S A V
Sbjct: 1652 SPTSPSFSPASPAFSPTSPSYSPTSPAVGGV 1682
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----------S 108
SP+Y+ SP ++ SP Y+ SP+++ SPA+ P SP+Y+P SPA V S
Sbjct: 1634 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTS 1693
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P YT SP ++ SP + + T + A + SP SP Y+ SPA++
Sbjct: 1694 PKYTPTSPGWSPTSPQ----TYSPTSPNFAGSPTSPG-GPTSPGYSPTSPAFS 1741
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 47/66 (71%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP+Y SP+Y SP+Y+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPAY
Sbjct: 1460 SPSYGPTSPSYGPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1519
Query: 119 TQVSPA 124
+ SPA
Sbjct: 1520 SPTSPA 1525
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 70/152 (46%), Gaps = 42/152 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA- 117
SP+Y SP+Y+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPAY+ SPA
Sbjct: 1467 SPSYGPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1526
Query: 118 -----------------------------------------YTQVSPAYTQVSLAYTQVS 136
Y+ SP Y+ S Y+ S
Sbjct: 1527 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTS 1586
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1587 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1618
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 70/152 (46%), Gaps = 42/152 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA-------- 110
SP+Y+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SPA
Sbjct: 1474 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1533
Query: 111 ----------------------------------YTQVSPAYTQVSPAYTQVSLAYTQVS 136
Y+ SP Y+ SP Y+ S Y+ S
Sbjct: 1534 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTS 1593
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1594 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1625
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 69/152 (45%), Gaps = 42/152 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA--------------- 103
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPA
Sbjct: 1481 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1540
Query: 104 ---------------------------YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
Y+ SP Y+ SP Y+ SP Y+ S Y+ S
Sbjct: 1541 SPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTS 1600
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1601 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1632
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y SP+Y SP+Y SP+Y+ SPAY P SPAY+P SPAY+ SPAY+ SPAY+
Sbjct: 1455 GYGATSPSYGPTSPSYGPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1514
Query: 121 VSPAYT 126
SPAY+
Sbjct: 1515 TSPAYS 1520
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 68/152 (44%), Gaps = 42/152 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------------------- 96
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPA
Sbjct: 1488 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1547
Query: 97 --------------------YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S
Sbjct: 1548 SPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTS 1607
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1608 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1639
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 68/152 (44%), Gaps = 42/152 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA----------------------------- 89
SPAY+ SPAY+ SPAY+ SPAY+ SPA
Sbjct: 1495 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1554
Query: 90 -------------YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S
Sbjct: 1555 SPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTS 1614
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ SP Y+ S +Y+
Sbjct: 1615 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYS 1646
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP+Y+P
Sbjct: 1607 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYSP 1647
>gi|397472018|ref|XP_003807558.1| PREDICTED: uncharacterized protein LOC100968526 [Pan paniscus]
Length = 2602
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/164 (32%), Positives = 66/164 (40%), Gaps = 17/164 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 2110 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 2169
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y SP Y SP Y SP Y SS Y
Sbjct: 2170 EPQSP-------GYEPRSPGYEPRSPGYEPRSPGYEPRSPGYESESSRYES-------QN 2215
Query: 179 RESNSRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVHCHDS 219
E ++S +EA F E M P+ L I++GVH DS
Sbjct: 2216 TELKTQSPEFEAQSSKFQEGAEMLLNPEEKSPLNISVGVHPLDS 2259
Score = 44.7 bits (104), Expect = 0.025, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 31/80 (38%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
+D + SP Y SP Y SP Y SP Y SP Y P SP Y S Y
Sbjct: 2155 SDSQSPEFESQSPRYEPQSPGYEPRSPGYEPRSPGYEPRSPGYEPRSPGYESESSRYESQ 2214
Query: 108 SPAYTQVSPAYTQVSPAYTQ 127
+ SP + S + +
Sbjct: 2215 NTELKTQSPEFEAQSSKFQE 2234
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 31/129 (24%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY-TQVSPAYTQVSPA 117
SP Y+ VSP Y+ SP T SP ++ SPA+ P SPAY+P SP++ + SP+Y+ SP
Sbjct: 1570 SPGYSPVSPGYSPTSPGMT--SPGFSPSSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPN 1627
Query: 118 YTQVSPAY----------------------------TQVSLAYTQVSLAYTQVSPAYTQV 149
Y+ SPA+ + T + SP Y+
Sbjct: 1628 YSPTSPAFHGQSPSSPNYSPTSPSYSPTSPSYSPTSPNFTANKTSPGSGLSPTSPVYSPT 1687
Query: 150 SPAYTQVSP 158
SP+++ SP
Sbjct: 1688 SPSFSPTSP 1696
Score = 69.7 bits (169), Expect = 7e-10, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T SP Y+ VSP Y+ SP T SP + P SPA+TP SPAY+ SP++ VSP S
Sbjct: 1567 TPTSPGYSPVSPGYSPTSPGMT--SPGFSPSSPAFTPTSPAYSPTSPSF--VSP----TS 1618
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
P+Y+ S Y+ S A+ SP+ SP SP S NK PG +
Sbjct: 1619 PSYSPTSPNYSPTSPAFHGQSPSSPNYSPTSPSYSPTSPSYSPTSPNFTANKTSPGSGLS 1678
Query: 183 SRSSAYEAFFHEWVWMSWYPDINPTLP 209
S Y P +PT P
Sbjct: 1679 PTSPVYSPT---------SPSFSPTSP 1696
Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 38/139 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAY-TQVSPAYIPVSPAYTPVSPAYTQVSPA------- 110
SP ++ SPA+T SPAY+ SP++ + SP+Y P SP Y+P SPA+ SP+
Sbjct: 1589 SPGFSPSSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPAFHGQSPSSPNYSPT 1648
Query: 111 ----------------------------YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
+ SP Y+ SP+++ S AY T
Sbjct: 1649 SPSYSPTSPSYSPTSPNFTANKTSPGSGLSPTSPVYSPTSPSFSPTSPAYAAAQANAT-- 1706
Query: 143 SPAYTQVSPAYTQVSPAYT 161
SP Y+ SP+Y+ SP ++
Sbjct: 1707 SPKYSPTSPSYSPTSPQFS 1725
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 40/112 (35%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPA-------------------------------- 82
V SP+Y+ SP Y+ SPA+ SP+
Sbjct: 1614 VSPTSPSYSPTSPNYSPTSPAFHGQSPSSPNYSPTSPSYSPTSPSYSPTSPNFTANKTSP 1673
Query: 83 ---YTQVSPAYIPVSPAYTPVSP-----AYTQVSPAYTQVSPAYTQVSPAYT 126
+ SP Y P SP+++P SP SP Y+ SP+Y+ SP ++
Sbjct: 1674 GSGLSPTSPVYSPTSPSFSPTSPAYAAAQANATSPKYSPTSPSYSPTSPQFS 1725
Score = 40.4 bits (93), Expect = 0.51, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQ-----VSPAYTQVSPAYIPVSPAYTP 99
SP Y+ SP+++ SPAY SP Y+ SP+Y P SP ++P
Sbjct: 1681 SPVYSPTSPSFSPTSPAYAAAQANATSPKYSPTSPSYSPTSPQFSP 1726
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV---SPAYIPVSPAYTPVSPAYTQVSPAYT 112
+ SP ++ SP++ SPAY+ SPAY Q SP+Y P SP ++P SP Y+ SP+++
Sbjct: 1600 FMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFS 1659
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SPA++ SP+Y+ S A + SP SP YT SP ++ S
Sbjct: 1660 PASPAFSPTSPSYSPTSPAIGGAGRHLSPTSP----TSPKYTPTSPGWSPTS 1707
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----------S 108
SP+Y+ SP ++ SP Y+ SP+++ SPA+ P SP+Y+P SPA S
Sbjct: 1634 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTS 1693
Query: 109 PAYTQVSPAYTQVSPAY---TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
P YT SP ++ SP T + A + S SP Y+ SPA+ SP+Y SS
Sbjct: 1694 PKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-GPTSPGYSPTSPAF---SPSYVPSSS 1749
Query: 166 A 166
A
Sbjct: 1750 A 1750
>gi|213556948|gb|ACJ53765.1| RNA polymerase II, partial [Plasmodium cynomolgi]
Length = 232
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP Y+ SP Y+ SP Y+ SP Y SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYLPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 111
Query: 118 YTQVSPAYTQVSLAYTQVSL-----------AYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
Y+ SP Y+ S Y+ S Y SP ++ SPAY+ SP Y Q +A
Sbjct: 112 YSPTSPKYSPTSPQYSPTSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNA 171
Query: 167 YTQ 169
+
Sbjct: 172 RNK 174
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP-----------AYTQ 106
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y
Sbjct: 87 TSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPTSPVPNNPSSPHYSPYAI 146
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP ++ SPAY+ SP Y Q A + +SPAY SP
Sbjct: 147 ASPKFSPTSPAYSISSPVYDQSGNARNKSQHP---LSPAYILQSP 188
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV---SPAYIPVSPAYTPVSPAYTQVSPAYT 112
+ SP ++ SP++ SPAY+ SPAY Q SP+Y P SP ++P SP Y+ SP+++
Sbjct: 1600 FMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFS 1659
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SPA++ SP+Y+ S A + SP SP YT SP ++ S
Sbjct: 1660 PASPAFSPTSPSYSPTSPAIGGAGRHLSPTSP----TSPKYTPTSPGWSPTS 1707
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 17/121 (14%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----------S 108
SP+Y+ SP ++ SP Y+ SP+++ SPA+ P SP+Y+P SPA S
Sbjct: 1634 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTS 1693
Query: 109 PAYTQVSPAYTQVSPAY---TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
P YT SP ++ SP T + A + S SP Y+ SPA+ SP+Y SS
Sbjct: 1694 PKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-GPTSPGYSPTSPAF---SPSYVPSSS 1749
Query: 166 A 166
A
Sbjct: 1750 A 1750
>gi|410984776|ref|XP_003998702.1| PREDICTED: zinc finger protein 768 [Felis catus]
Length = 554
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 84/220 (38%), Gaps = 28/220 (12%)
Query: 3 TPDFLGLIGGTLTVEIFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAY 62
+PD LG G+L NV E +++ DY +E + SP +
Sbjct: 17 SPDELGSPEGSLKG----------NVSENEEEEMSQQEGTGDY-EVEEIPFGLEPQSPGF 65
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
SP + SP + SP + SP +P SP + P SP SP + SP Y S
Sbjct: 66 EPQSPEFEPQSPRFEPESPGFESRSPGCVPPSPEFAPRSPESDSQSPEFEPQSPRYEPQS 125
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
P Y S Y S Y SP Y SP Y SP Y + +
Sbjct: 126 PGYEPRSPGYEPRSPGYEPKSPGYEPQSPGYAPQSPGYEPQNPEF--------------K 171
Query: 183 SRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVHCHDS 219
++S +EA F E M P+ L I +GVH DS
Sbjct: 172 TQSPEFEAQSSKFQEGAEMLLNPEEKNPLSIPLGVHPLDS 211
>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
Length = 2270
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 67/139 (48%), Gaps = 24/139 (17%)
Query: 58 VSPAYTQVSPAY-TQVSPAYTQVSPAYTQV------SPAYIPVSPAYTP--VSPAYTQVS 108
+S Y+ +SP Y T + Y+ VSP Y + SP+YIP SP+YTP SP+ +S
Sbjct: 1974 ISAGYSPISPGYNTSPNATYSPVSPGYGTIGGFSPSSPSYIPASPSYTPSGFSPSGMPIS 2033
Query: 109 --PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV-----------SPAYTQ 155
AY SP Y SPAY Q S T SP+YT S A+T
Sbjct: 2034 GTNAYAPSSPTYAPSSPAYNSPFTPGVQSSAQNTVTSPSYTPSVSSFASNRPTNSSAFTP 2093
Query: 156 VSPAYTQVSSAYTQVILNK 174
VSPAY+ SS ILN+
Sbjct: 2094 VSPAYS--SSRQPGSILNR 2110
Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 68/161 (42%), Gaps = 55/161 (34%)
Query: 56 YTVSP--AYTQVSPAYTQV------SPAYTQVSPAYTQ--VSP---------AYIPVSPA 96
Y SP Y+ VSP Y + SP+Y SP+YT SP AY P SP
Sbjct: 1985 YNTSPNATYSPVSPGYGTIGGFSPSSPSYIPASPSYTPSGFSPSGMPISGTNAYAPSSPT 2044
Query: 97 YTPVSPAY--------------TQVSPAYTQV-----------SPAYTQVSPAYTQV--- 128
Y P SPAY T SP+YT S A+T VSPAY+
Sbjct: 2045 YAPSSPAYNSPFTPGVQSSAQNTVTSPSYTPSVSSFASNRPTNSSAFTPVSPAYSSSRQP 2104
Query: 129 -SLAYTQVSLAYTQVSPAYTQVSP-------AYTQVSPAYT 161
S+ ++L YT SP+Y S YT VSP+YT
Sbjct: 2105 GSILNRPMNLGYTPTSPSYNPSSTFGRSSNVGYTPVSPSYT 2145
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSP----AYTQVSPAYTQV-SPAYI---PVSPAYTPVS 101
+ A SP+YT ++ P A+T VSPAY+ P I P++ YTP S
Sbjct: 2061 QSSAQNTVTSPSYTPSVSSFASNRPTNSSAFTPVSPAYSSSRQPGSILNRPMNLGYTPTS 2120
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQV--SLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P+Y S + YT VSP+YT AY +L+Y SP+YT ++ +P
Sbjct: 2121 PSYNPSSTFGRSSNVGYTPVSPSYTGSFQGSAYRPSNLSYAPTSPSYTSINSMMPPKTP 2179
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 26/144 (18%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA--------YTQVSPAYTQV---- 114
P + + AY S Y P+S Y+P+SP Y+ VSP Y +
Sbjct: 1948 PEDSPLGKAYKIESSPSHSTQGGYSPISAGYSPISPGYNTSPNATYSPVSPGYGTIGGFS 2007
Query: 115 --SPAYTQVSPAYTQVSLAYTQVSL----AYTQVSPAYTQVSPAY-------TQVSPAYT 161
SP+Y SP+YT + + + + AY SP Y SPAY Q S T
Sbjct: 2008 PSSPSYIPASPSYTPSGFSPSGMPISGTNAYAPSSPTYAPSSPAYNSPFTPGVQSSAQNT 2067
Query: 162 QVSSAYTQVILNKIRPGRESNSRS 185
S +YT + + R +NS +
Sbjct: 2068 VTSPSYTPSV-SSFASNRPTNSSA 2090
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
++ SP Y+ SP+Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1780 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1839
Query: 129 SLAYTQVS 136
S Y+ S
Sbjct: 1840 SPTYSPTS 1847
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T SP+Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 1786 TYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSP 1845
Query: 114 VSP 116
SP
Sbjct: 1846 TSP 1848
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
++ SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1780 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1839
Query: 136 SLAYTQVSP 144
S Y+ SP
Sbjct: 1840 SPTYSPTSP 1848
Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
+ P SP Y+P SP+Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+
Sbjct: 1780 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1839
Query: 150 SPAYTQVSP 158
SP Y+ SP
Sbjct: 1840 SPTYSPTSP 1848
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
++P SP Y+ SP+Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+
Sbjct: 1780 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1839
Query: 157 SPAYTQVS 164
SP Y+ S
Sbjct: 1840 SPTYSPTS 1847
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
++ SP Y+ SP+Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1780 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1839
Query: 164 SSAYT 168
S Y+
Sbjct: 1840 SPTYS 1844
Score = 36.6 bits (83), Expect = 7.4, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 26/86 (30%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQV-----SPA---YIPVSPA-------------YT 98
P ++ + T SPAY SPA++ SPA YIP SPA Y
Sbjct: 1503 PGFSPANSESTGFSPAY---SPAWSPQPQSPGSPANSPYIP-SPAGPMSPSYSPASPSYL 1558
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPA 124
P SPA Q SP Y+ SP+Y+ SP
Sbjct: 1559 PASPATPQ-SPGYSPTSPSYSPTSPG 1583
>gi|213556950|gb|ACJ53766.1| RNA polymerase II, partial [Plasmodium cynomolgi]
gi|213556952|gb|ACJ53767.1| RNA polymerase II, partial [Plasmodium cynomolgi]
Length = 225
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP Y+ SP Y+ SP Y+ SP Y SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYLPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 111
Query: 118 YTQVSPAYTQVSLAYTQVS----LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Y+ SP Y+ S S Y SP ++ SPAY+ SP Y Q +A +
Sbjct: 112 YSPTSPQYSPTSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARNK 167
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform 3
[Strongylocentrotus purpuratus]
Length = 1921
Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
++ SP Y+ SP+Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1821 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1880
Query: 129 SLAYTQVS 136
S Y+ S
Sbjct: 1881 SPTYSPTS 1888
Score = 70.5 bits (171), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T SP+Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 1827 TYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPSSPTYSP 1886
Query: 114 VSP 116
SP
Sbjct: 1887 TSP 1889
Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
++ SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1821 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1880
Query: 136 SLAYTQVSP 144
S Y+ SP
Sbjct: 1881 SPTYSPTSP 1889
Score = 70.1 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
+ P SP Y+P SP+Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+
Sbjct: 1821 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1880
Query: 150 SPAYTQVSP 158
SP Y+ SP
Sbjct: 1881 SPTYSPTSP 1889
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
++P SP Y+ SP+Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+
Sbjct: 1821 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1880
Query: 157 SPAYTQVS 164
SP Y+ S
Sbjct: 1881 SPTYSPTS 1888
Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
++ SP Y+ SP+Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1821 FSPSSPTYSPASPSYSPTSPKYSPSSPKYSPTSPTYSPTSPKYSPASPTYSPTSPKYSPS 1880
Query: 164 SSAYT 168
S Y+
Sbjct: 1881 SPTYS 1885
Score = 36.2 bits (82), Expect = 9.2, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 60 PAYTQVSPAYTQVSPAYTQV------SPAYTQVSPAYIPVSPA-------------YTPV 100
P ++ + T SPAY+ SP SP YIP SPA Y P
Sbjct: 1544 PGFSPANSESTGFSPAYSPAWSPQPQSPGSPANSP-YIP-SPAGPMSPSYSPASPSYLPA 1601
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPA 124
SPA Q SP Y+ SP+Y+ SP
Sbjct: 1602 SPATPQ-SPGYSPTSPSYSPTSPG 1624
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP SP + SPA+ P SP Y+P SP Y+ SP Y+ SPAY
Sbjct: 1569 SPGYSPTSPGYSPTSPGLNLTSPRFGGTSPAFSPTSPGYSPTSPGYSPTSPGYSPTSPAY 1628
Query: 119 TQV----------------SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ + + S AY S AY+ SP+Y+ SP Y+ SPAY+
Sbjct: 1629 NSLSPTSPSYSPTSPSYSPTSPSSPTSPAYMARS-AYSPTSPSYSPTSPKYSPTSPAYSP 1687
Query: 163 VSSAYT 168
S Y+
Sbjct: 1688 TSPQYS 1693
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 36/137 (26%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV---- 114
SP Y+ SP SP + SPA++ SP Y P SP Y+P SP Y+ SPAY +
Sbjct: 1576 SPGYSPTSPGLNLTSPRFGGTSPAFSPTSPGYSPTSPGYSPTSPGYSPTSPAYNSLSPTS 1635
Query: 115 --------------------------------SPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
SP+Y+ SP Y+ S AY+ S Y+
Sbjct: 1636 PSYSPTSPSYSPTSPSSPTSPAYMARSAYSPTSPSYSPTSPKYSPTSPAYSPTSPQYSPT 1695
Query: 143 SPAYTQVSPAYTQVSPA 159
SP + S + SPA
Sbjct: 1696 SPQFGGGSDRRSPTSPA 1712
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 33/140 (23%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQV-----------------------------SPA 89
SP Y+ SP Y+ SP Y+ SPAY + A
Sbjct: 1604 SPGYSPTSPGYSPTSPGYSPTSPAYNSLSPTSPSYSPTSPSYSPTSPSSPTSPAYMARSA 1663
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS--LAYTQVSPAYT 147
Y P SP+Y+P SP Y+ SPAY+ SP Y+ SP + S + S + Y+ SP Y+
Sbjct: 1664 YSPTSPSYSPTSPKYSPTSPAYSPTSPQYSPTSPQFGGGSDRRSPTSPAVGYSPTSPIYS 1723
Query: 148 QVSP--AYTQVSPAYTQVSS 165
SP AY SP Q S+
Sbjct: 1724 PTSPGTAYPPTSPGTGQYSA 1743
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 76 YTQVSPAYTQVSP--AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
Y SP Y SP P SP Y+P SP Y+ SP SP + SPA++ S Y+
Sbjct: 1549 YAGRSPGYAPTSPFSGQSPTSPGYSPTSPGYSPTSPGLNLTSPRFGGTSPAFSPTSPGYS 1608
Query: 134 QVSLAYTQVSPAYTQVSPAYTQV 156
S Y+ SP Y+ SPAY +
Sbjct: 1609 PTSPGYSPTSPGYSPTSPAYNSL 1631
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA--YTQVSPAY 125
AY+ SP+Y+ SP Y+ SPAY P SP Y+P SP + S + SPA Y+ SP Y
Sbjct: 1663 AYSPTSPSYSPTSPKYSPTSPAYSPTSPQYSPTSPQFGGGSDRRSPTSPAVGYSPTSPIY 1722
Query: 126 TQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSP 158
+ T AY SP Y+ SP Y+ SP
Sbjct: 1723 SP-----TSPGTAYPPTSPGTGQYSATSPKYSPTSP 1753
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA--YTQ 113
Y AY+ SP+Y+ SP Y+ SPAY+ SP Y P SP + S + SPA Y+
Sbjct: 1658 YMARSAYSPTSPSYSPTSPKYSPTSPAYSPTSPQYSPTSPQFGGGSDRRSPTSPAVGYSP 1717
Query: 114 VSPAYTQVSP--AYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP Y+ SP AY S Q Y+ SP Y+ SP
Sbjct: 1718 TSPIYSPTSPGTAYPPTSPGTGQ----YSATSPKYSPTSP 1753
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1634 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1693
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S Y+ S Y+ SP Y SPA Q SP+
Sbjct: 1694 SPTSPQYSPTSPQYSPTSPQYSPTSPQY---SPASPQYSPS 1731
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1630 YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPT 1689
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
S Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1690 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPASPQYS 1729
>gi|213556942|gb|ACJ53762.1| RNA polymerase II, partial [Plasmodium vivax]
Length = 225
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 111
Query: 118 YTQVSPAYTQVSLAYTQVS----LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Y+ SP Y+ S S Y SP ++ SPAY+ SP Y Q +A ++
Sbjct: 112 YSPTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSK 167
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 62/127 (48%), Gaps = 23/127 (18%)
Query: 55 VYTV-SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
VY+V SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+
Sbjct: 55 VYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSP 114
Query: 114 VSPAYTQVSP-----------AYTQVSLAYTQVSLAYTQVSPAYTQ-----------VSP 151
SP Y+ SP Y S ++ S AY+ SP Y Q +SP
Sbjct: 115 TSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYSISSPVYDQSGNARSKSQHPLSP 174
Query: 152 AYTQVSP 158
AY SP
Sbjct: 175 AYILQSP 181
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 23/151 (15%)
Query: 79 VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
VSP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 111
Query: 139 YTQVSPAYTQVSP-----------AYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSA 187
Y+ SP Y+ SP Y SP ++ S AY+ I + + + N+RS +
Sbjct: 112 YSPTSPQYSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYS--ISSPVY-DQSGNARSKS 168
Query: 188 YEAFFHEWVWMSWYPDINPTLPIAMGVHCHD 218
++ S P+ + H D
Sbjct: 169 QHPLSPAYILQS---------PVQVKQHIQD 190
>gi|149067738|gb|EDM17290.1| rCG39624 [Rattus norvegicus]
Length = 567
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 67/161 (41%), Gaps = 5/161 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + S Y
Sbjct: 61 SPGFEPQSPEFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFESQSSRY 120
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT-QVILNKIRP 177
SP Y S Y S Y SP Y SP + SP S Y Q +++R
Sbjct: 121 EPQSPGYDPKSPGYEPGSPRYEPKSPGYGSKSPEFESQSPGCESQSPGYEPQNSGDEVR- 179
Query: 178 GRESNSRSSAYE---AFFHEWVWMSWYPDINPTLPIAMGVH 215
E + S +E + F E M P+ L I +GVH
Sbjct: 180 NSEFKTHSPEFETQSSKFQEGAEMLLNPEEKNPLNIPLGVH 220
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 1770
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP------AYTQVSPAYT 112
SP Y+ SPA SPAYT SPAYT SP + P SP+++P SP Y+ SP Y+
Sbjct: 1602 SPTYSPTSPALQMTSPAYTPTSPAYTPTSPNFSPTSPSFSPTSPNPRAATGYSPTSPQYS 1661
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP---AYTQVSP 158
SP Y+ SP YT S Y+ S + SP Y+ SP A TQ SP
Sbjct: 1662 PTSPQYSPTSPQYTPTSPQYSPTSPHLSPTSPRYSPTSPVHGASTQFSP 1710
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP-- 116
SP Y A SP Y+ SPA SPAY P SPAYTP SP ++ SP+++ SP
Sbjct: 1588 SPFYDPRRTAAMATSPTYSPTSPALQMTSPAYTPTSPAYTPTSPNFSPTSPSFSPTSPNP 1647
Query: 117 ----AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
Y+ SP Y+ S Y+ S YT SP Y+ SP + SP Y+ S
Sbjct: 1648 RAATGYSPTSPQYSPTSPQYSPTSPQYTPTSPQYSPTSPHLSPTSPRYSPTS 1699
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
DE Y + + + SP Y SPAY+ SP ++P SP YT + +
Sbjct: 1520 GADETSQFSYRATLGQSPLGAGLGGASPGYAPTSPAYSPTSP-FVPTSPGYTSGATSPFI 1578
Query: 107 VSP-AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP SP Y A S Y+ S A SPAYT SPAYT SP ++ S
Sbjct: 1579 TSPLGAGATSPFYDPRRTAAMATSPTYSPTSPALQMTSPAYTPTSPAYTPTSPNFSPTSP 1638
Query: 166 AYT 168
+++
Sbjct: 1639 SFS 1641
>gi|294872624|ref|XP_002766340.1| Kinesin heavy chain, putative [Perkinsus marinus ATCC 50983]
gi|239867145|gb|EEQ99057.1| Kinesin heavy chain, putative [Perkinsus marinus ATCC 50983]
Length = 121
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
+ Q+ + Q+S + Q+S + Q+ +S + + + Q+S + Q+S + Q
Sbjct: 12 SLEQIDASLDQLSKSLEQISESLDQIGENLEQISESLEQIDASLDQISESLEQISESLEQ 71
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+S + Q+S + Q+S + Q+S Q+S + Q+S Q+S + Q+
Sbjct: 72 ISKSLDQISKSLDQISKSLDQISRTVDQISKSLDQISRTVDQISKSLDQI 121
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
++ + + Q+S + Q+S + Q+ Q+S + + + +S + Q+S + Q
Sbjct: 12 SLEQIDASLDQLSKSLEQISESLDQIGENLEQISESLEQIDASLDQISESLEQISESLEQ 71
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
+S + Q+S + Q+S + Q+S Q+S + Q+S Q+S + Q+
Sbjct: 72 ISKSLDQISKSLDQISKSLDQISRTVDQISKSLDQISRTVDQISKSLDQI 121
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+A++ +S + Q+S + Q+ Q+S + Q+ + +S + +S + Q+S +
Sbjct: 17 DASLDQLSKSLEQISESLDQIGENLEQISESLEQIDASLDQISESLEQISESLEQISKSL 76
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
Q+S + Q+S + Q+S Q+S + Q+S Q+S + Q+
Sbjct: 77 DQISKSLDQISKSLDQISRTVDQISKSLDQISRTVDQISKSLDQI 121
>gi|291231364|ref|XP_002735634.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 361
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
+ VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 165 ISNVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNV 224
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VSS + V
Sbjct: 225 SPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQVSNVSSQVSNV 280
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 95 VSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNV 154
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 155 SPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNV 210
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 151 VSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNV 210
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 211 SPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNV 266
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 158 VSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNV 217
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 218 SPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQVSNV 273
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 27 NVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 86
NV S + I + ++ +S + ++ VSP + VSP + VSP + VSP + V
Sbjct: 62 NVPSQVSIVSPQVSNVSPQVSNVSPQVSI--VSPQVSNVSPQVSNVSPQVSNVSPQISNV 119
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SP VSP + VSP + VSP + VSP + VSP + VS + VS + VSP
Sbjct: 120 SPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQV 179
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQV 170
+ VSP + VSP + VS + V
Sbjct: 180 SNVSPQVSNVSPQISNVSPQVSNV 203
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 102 VSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQVSNV 161
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP + VSP + VS + VS + VSP + VSP + VSP + VS
Sbjct: 162 SPQISNVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVS 211
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 109 VSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQVSNVSPQISNV 168
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 169 SPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNV 224
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 123 VSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNV 182
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 183 SPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNV 238
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 130 VSNVSPQASNVSPQISNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNV 189
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 190 SPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNV 245
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
+ VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 144 ISNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNV 203
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 204 SPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNV 259
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 62/116 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
+ VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 116 ISNVSPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQVSNVSPQISNVSPQVSNV 175
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 176 SPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNV 231
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + VSP
Sbjct: 139 NVSPQISNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQISNVSP 198
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ VSP + VS + VS + VSP + VSP + VSP + VS + V
Sbjct: 199 QVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNV 252
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 59/110 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 172 VSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNV 231
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP + VSP + VS + VS + VSP + VSP + VS + VS
Sbjct: 232 SPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQVSNVSSQVSNVS 281
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 59/110 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 179 VSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNV 238
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP + VSP + VS + VS + VSP + VS + VSP + VS
Sbjct: 239 SPQISNVSPQVSNVSPQVSNVSPQVSNVSPQVSNVSSQVSNVSPQASNVS 288
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
+ VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 193 ISNVSPQVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNV 252
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP + VSP + VS + VS + VSP + VSP + SP + +S
Sbjct: 253 SPQVSNVSPQVSNVSPQVSNVSSQVSNVSPQASNVSPQVSNRSPQDSNMS 302
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 186 VSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNV 245
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
SP + VSP + VS + VS + VS + VSP + VSP +
Sbjct: 246 SPQVSNVSPQVSNVSPQVSNVSPQVSNVSSQVSNVSPQASNVSPQVS 292
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 200 VSNVSPQVSNVSPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNV 259
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP + VSP + VS + VS + VSP + SP + +SP + +S
Sbjct: 260 SPQVSNVSPQVSNVSSQVSNVSPQASNVSPQVSNRSPQDSNMSPQDSNMS 309
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 55 VYTVSPAYTQVSPAYTQ-------VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
V VSP + VSP + VSP + VSP + VSP VSP + VSP + V
Sbjct: 46 VSNVSPQVSNVSPQVSNVPSQVSIVSPQVSNVSPQVSNVSPQVSIVSPQVSNVSPQVSNV 105
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP + VSP + VSP + VS + VS + VSP + VSP + VSP + VS
Sbjct: 106 SPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQVSNVSPQI 165
Query: 168 TQV 170
+ V
Sbjct: 166 SNV 168
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQ-------VSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
V VSP + VSP + VSP + VSP + VSP VSP + VSP + V
Sbjct: 39 VSIVSPQVSNVSPQVSNVSPQVSNVPSQVSIVSPQVSNVSPQVSNVSPQVSIVSPQVSNV 98
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP + VSP + VSP + VS + VS + VSP + VSP + VSP + VS
Sbjct: 99 SPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQV 158
Query: 168 TQV 170
+ V
Sbjct: 159 SNV 161
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP--AYIP-----VSPAYTPVSPAYTQV 107
V VSP + VSP + VSP + VSP + VSP + +P VSP + VSP + V
Sbjct: 25 VSNVSPQVSIVSPQVSIVSPQVSNVSPQVSNVSPQVSNVPSQVSIVSPQVSNVSPQVSNV 84
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP + VSP + VSP + VS + VS + VSP + VSP + VSP + VS
Sbjct: 85 SPQVSIVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQASNVSPQI 144
Query: 168 TQV 170
+ V
Sbjct: 145 SNV 147
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ-------V 107
V VSP VSP + VSP + VSP + VSP VSP + VSP + V
Sbjct: 11 VSNVSPQVNNVSPQVSNVSPQVSIVSPQVSIVSPQVSNVSPQVSNVSPQVSNVPSQVSIV 70
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP + VSP + VSP + VS + VS + VSP + VSP + VSP + VS
Sbjct: 71 SPQVSNVSPQVSNVSPQVSIVSPQVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQV 130
Query: 168 TQV 170
+ V
Sbjct: 131 SNV 133
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
+ + VSP + VSP VSP + VSP + VSP VSP + VSP + VSP +
Sbjct: 2 SQISIVSPRVSNVSPQVNNVSPQVSNVSPQVSIVSPQVSIVSPQVSNVSPQVSNVSPQVS 61
Query: 113 Q-------VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
VSP + VSP + VS + VS + VSP + VSP + VSP + VS
Sbjct: 62 NVPSQVSIVSPQVSNVSPQVSNVSPQVSIVSPQVSNVSPQVSNVSPQVSNVSPQISNVSP 121
Query: 166 AYTQV 170
+ V
Sbjct: 122 QVSNV 126
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + V
Sbjct: 207 VSNVSPQASNVSPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNV 266
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP + VS + VS + VS + SP + +SP + +SP + VS
Sbjct: 267 SPQVSNVSSQVSNVSPQASNVSPQVSNRSPQDSNMSPQDSNMSPEVSIVS 316
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 55 VYTVSPAYT----QVSPAYTQ---VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
V VSP + QVS Q VSP + VSP + VSP VSP + VSP + V
Sbjct: 53 VSNVSPQVSNVPSQVSIVSPQVSNVSPQVSNVSPQVSIVSPQVSNVSPQVSNVSPQVSNV 112
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP + VSP + VSP + VS + VS + VSP + VSP + VSP + VS
Sbjct: 113 SPQISNVSPQVSNVSPQVSNVSPQASNVSPQISNVSPQVSNVSPQVSNVSPQISNVSPQV 172
Query: 168 TQV 170
+ V
Sbjct: 173 SNV 175
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
VSP + VSP + VSP + VSP + VSP VSP + VSP + VSP + VS
Sbjct: 216 NVSPRVSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQVSNVSS 275
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ VSP + VS + S + +SP + +SP + VSP
Sbjct: 276 QVSNVSPQASNVSPQVSNRSPQDSNMSPQDSNMSPEVSIVSP 317
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP + VSP + VSP + VSP + VSP VSP + VSP + VS + V
Sbjct: 221 VSNVSPQVSNVSPQVSNVSPQISNVSPQVSNVSPQVSNVSPQVSNVSPQVSNVSSQVSNV 280
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP + VSP + S + +S + +SP + VSP
Sbjct: 281 SPQASNVSPQVSNRSPQDSNMSPQDSNMSPEVSIVSP 317
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA SP Y+ SP Y+ SP+++ SP Y P SP+++P SP Y+ SP+++ SP Y
Sbjct: 1639 SPALNLTSPNYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRY 1698
Query: 119 TQVSPAYTQ-VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP + S Y+ S + SP Y+ SPAY+ SP Y+ S AY+
Sbjct: 1699 SPTSPVHQSPTSPKYSPTS-PQSPASPKYSPTSPAYSPTSPTYSPASPAYS 1748
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ----- 113
SP Y+ SP+++ SP Y+ SP+++ SP Y P SP+++P SP Y+ SP +
Sbjct: 1653 SPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPVHQSPTSPK 1712
Query: 114 ---------VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SPAY+ S Y+ S AY+ SP ++ SPA T
Sbjct: 1713 YSPTSPQSPASPKYSPTSPAYSPTSPTYSPASPAYSPTSPQWSPSSPAQNSNMQNGTTRH 1772
Query: 165 SAYT 168
SAY+
Sbjct: 1773 SAYS 1776
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 17/128 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1603 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1662
Query: 119 T--------QVSPA---------YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ Q+SPA + S Y+ S AY+ SPAY+ SPAY+ SP ++
Sbjct: 1663 SPASPRSPAQMSPASPRYSPTSPASPSSPKYSPTSPAYSPASPAYSPASPAYSPTSPQWS 1722
Query: 162 QVSSAYTQ 169
S A TQ
Sbjct: 1723 PSSPAQTQ 1730
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
VY+ + Y SP SP T SP Y + P SP Y+P SPA SP
Sbjct: 1563 NVYSPTSPYVPASPFGGATSPFGTSPYATSPFYDRTRG---PTSPTYSPTSPALNLTSPG 1619
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP
Sbjct: 1620 YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASP 1667
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 26/133 (19%)
Query: 54 TVYTVSP-AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP----------------- 95
T Y +SP +SPA SP+ V Y+ SP Y+P SP
Sbjct: 1538 TGYGMSPMGAGGMSPAAAGYSPSSPNV---YSPTSP-YVPASPFGGATSPFGTSPYATSP 1593
Query: 96 ----AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP Y+ SPA SP Y+ SP Y+ S +++ S Y+ SP+++ SP
Sbjct: 1594 FYDRTRGPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSP 1653
Query: 152 AYTQVSPAYTQVS 164
Y+ SP+++ S
Sbjct: 1654 RYSPTSPSFSPAS 1666
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP YT SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1844 SPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPTSPTY 1903
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ SP + +Y+ SP Y+ SP Y+ SP + S
Sbjct: 1904 SPTSPKGS-----------SYSPTSPGYSPSSPTYSPTSPNMEEDSD 1939
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
Y+ SP YT SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1840 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPT 1899
Query: 136 SLAYTQVSP---AYTQVSPAYTQVSPAYTQVS 164
S Y+ SP +Y+ SP Y+ SP Y+ S
Sbjct: 1900 SPTYSPTSPKGSSYSPTSPGYSPSSPTYSPTS 1931
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP YTP SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+
Sbjct: 1840 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPT 1899
Query: 150 SPAYTQVSP---AYTQVSSAYT 168
SP Y+ SP +Y+ S Y+
Sbjct: 1900 SPTYSPTSPKGSSYSPTSPGYS 1921
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA-------YTPVSPAYTQVSPAY 111
SP Y+ SP Y+ SP Y+ SP+Y+ SPAY P SP+ Y+P SP Y+ S +Y
Sbjct: 1631 SPRYSPTSPGYSPPSPRYSPTSPSYSPTSPAYSPNSPSYSVKSQDYSPTSPNYSPASTSY 1690
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ P Y+ S Y+ SL Y+ +L Y+ S Y+ SP YT +P Y+ S +Y+
Sbjct: 1691 SPSGPVYSVNSQGYSPSSLNYSPSNLVYSPTSQNYSPSSPNYTPPAPPYSPTSHSYS 1747
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ P+Y+ S Y+ SP Y+ SP Y SP Y+P SP Y+ SP Y+ SP+Y+
Sbjct: 1602 YSPTGPSYSLTSHNYSPTSPIYSPNSPRY---SPRYSPTSPGYSPPSPRYSPTSPSYSPT 1658
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
SPAY+ S +Y+ S Y+ SP Y+ S +Y+ P Y+ S Y+ LN
Sbjct: 1659 SPAYSPNSPSYSVKSQDYSPTSPNYSPASTSYSPSGPVYSVNSQGYSPSSLN 1710
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
P+Y+ S Y+ SP Y+ SP Y SP Y P SP Y+P SP Y+ SP+Y+ SPAY
Sbjct: 1606 GPSYSLTSHNYSPTSPIYSPNSPRY---SPRYSPTSPGYSPPSPRYSPTSPSYSPTSPAY 1662
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP+Y+ S Y+ S Y+ S +Y+ P Y+ S Y+ S Y+
Sbjct: 1663 SPNSPSYSVKSQDYSPTSPNYSPASTSYSPSGPVYSVNSQGYSPSSLNYS 1712
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 64/117 (54%), Gaps = 10/117 (8%)
Query: 59 SPAYTQVSPAYT-------QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
SP+Y+ SP Y SP Y+ P+Y+ S Y P SP Y+P SP Y SP Y
Sbjct: 1578 SPSYSPTSPVYAAPSPSVTPSSPVYSPTGPSYSLTSHNYSPTSPIYSPNSPRY---SPRY 1634
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ SP Y+ S +Y+ S AY+ SP+Y+ S Y+ SP Y+ S++Y+
Sbjct: 1635 SPTSPGYSPPSPRYSPTSPSYSPTSPAYSPNSPSYSVKSQDYSPTSPNYSPASTSYS 1691
>gi|22122751|ref|NP_666314.1| zinc finger protein 768 [Mus musculus]
gi|81914857|sp|Q8R0T2.1|ZN768_MOUSE RecName: Full=Zinc finger protein 768
gi|20072920|gb|AAH26432.1| Zinc finger protein 768 [Mus musculus]
gi|74196390|dbj|BAE33082.1| unnamed protein product [Mus musculus]
gi|148685581|gb|EDL17528.1| cDNA sequence BC026432 [Mus musculus]
Length = 568
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 65 SPEFEPQSPEFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFESQSPKY 124
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP S S Y SP Y SP + SP Y S Y
Sbjct: 125 EPRSPGCHPRSPGCEPGSPRYEPKSPGYGSKSPEFESQSPGYESQSPGYEPQNSGDGVQN 184
Query: 179 RESNSRSSAYE---AFFHEWVWMSWYPDINPTLPIAMGVH 215
E + S +E + F E M P+ L I++GVH
Sbjct: 185 SEFKTHSPEFETQSSKFQEGAEMPLSPEEKNPLSISLGVH 224
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP + P SP + SP + SP + SP + S + S SP + SP
Sbjct: 63 PQSPEFEPQSPEFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFESQSP 122
Query: 152 AYTQVSPA 159
Y SP
Sbjct: 123 KYEPRSPG 130
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP ++ SP ++ SP++ P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y
Sbjct: 1597 SPRFSMTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1652
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ S +++ SPA++ SP+Y+ SPA
Sbjct: 1653 SPTSPSFSPASPAFSPTSPSYSPTSPA 1679
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP---AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP++ SPAY+ SPAY Q SP +Y+ SP + P SP Y+P SP+++ SPA++ S
Sbjct: 1611 SPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTS 1670
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P+Y+ SPA + + S SP YT SP ++ SP
Sbjct: 1671 PSYSPTSPAIGGAARHLSPTS----PTSPKYTPTSPGWSPTSP 1709
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY---TPVSPAYTQVSPAYTQVSPAYTQVS 122
SP ++ SP ++ SP++ SPAY P SPAY +P SP+Y+ SP ++ SP Y+ S
Sbjct: 1597 SPRFSMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTS 1656
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQV----------SPAYTQVSPAYTQVS 164
P+++ S A++ S +Y+ SPA SP YT SP ++ S
Sbjct: 1657 PSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTSPGWSPTS 1708
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 24/114 (21%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY----------TPVSPAYTQVS 108
SP ++ SP Y+ SP+++ SPA++ SP+Y P SPA +P SP YT S
Sbjct: 1642 SPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTS 1701
Query: 109 PAYTQVSP-AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P ++ SP Y+ SP + A + SP SP Y+ SPA++
Sbjct: 1702 PGWSPTSPQTYSPTSPNF------------AGSPTSPG-GPTSPGYSPTSPAFS 1742
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV---SLAYTQVSLAYTQVSPAYTQVS 150
SP ++ SP ++ SP++ SPAY+ SPAY Q S +Y+ S ++ SP Y+ S
Sbjct: 1597 SPRFSMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTS 1656
Query: 151 PAYTQVSPAYTQVSSAYT 168
P+++ SPA++ S +Y+
Sbjct: 1657 PSFSPASPAFSPTSPSYS 1674
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP ++ SP ++ SP++ P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y
Sbjct: 1597 SPRFSMTSPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1652
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ S +++ SPA++ SP+Y+ SPA
Sbjct: 1653 SPTSPSFSPASPAFSPTSPSYSPTSPA 1679
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 7/103 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP---AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP++ SPAY+ SPAY Q SP +Y+ SP + P SP Y+P SP+++ SPA++ S
Sbjct: 1611 SPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTS 1670
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P+Y+ SPA + + S SP YT SP ++ SP
Sbjct: 1671 PSYSPTSPAIGGAARHLSPTS----PTSPKYTPTSPGWSPTSP 1709
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY---TPVSPAYTQVSPAYTQVSPAYTQVS 122
SP ++ SP ++ SP++ SPAY P SPAY +P SP+Y+ SP ++ SP Y+ S
Sbjct: 1597 SPRFSMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTS 1656
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQV----------SPAYTQVSPAYTQVS 164
P+++ S A++ S +Y+ SPA SP YT SP ++ S
Sbjct: 1657 PSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTSPGWSPTS 1708
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY----------TPVSPAYTQVS 108
SP ++ SP Y+ SP+++ SPA++ SP+Y P SPA +P SP YT S
Sbjct: 1642 SPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTS 1701
Query: 109 PAYTQVSP-AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P ++ SP Y+ SP + A + S SP Y+ SPA++ SP
Sbjct: 1702 PGWSPTSPQTYSPTSPNF-----AGSPTSPG-GPTSPGYSPTSPAFSPSSP 1746
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV---SLAYTQVSLAYTQVSPAYTQVS 150
SP ++ SP ++ SP++ SPAY+ SPAY Q S +Y+ S ++ SP Y+ S
Sbjct: 1597 SPRFSMTSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTS 1656
Query: 151 PAYTQVSPAYTQVSSAYT 168
P+++ SPA++ S +Y+
Sbjct: 1657 PSFSPASPAFSPTSPSYS 1674
>gi|335284365|ref|XP_003354582.1| PREDICTED: zinc finger protein 768 [Sus scrofa]
Length = 520
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 42 SPGFGSQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFESQSPGY 101
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ---VILN 173
SP Y S Y S Y SP Y +P + SP + SS + + ++LN
Sbjct: 102 EPKSPGYEPKSPGYEPRSPGYESQSPGYEPQNPEFKTQSPEFEAQSSKFQEGADMLLN 159
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 53/151 (35%), Gaps = 34/151 (22%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP + SP + P SP + P SP + SP + SP + SP S
Sbjct: 42 SPGFGSQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQS---------- 91
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNS------------RSSA 187
P + SP Y SP Y S Y PG ES S +S
Sbjct: 92 ----PDFESQSPGYEPKSPGYEPKSPGY-----EPRSPGYESQSPGYEPQNPEFKTQSPE 142
Query: 188 YEA---FFHEWVWMSWYPDINPTLPIAMGVH 215
+EA F E M + L I +GVH
Sbjct: 143 FEAQSSKFQEGADMLLNSEEKNPLSIPLGVH 173
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
+D + SP Y SP Y SP Y SP Y SP Y P +P + SP +
Sbjct: 87 SDSQSPDFESQSPGYEPKSPGYEPKSPGYEPRSPGYESQSPGYEPQNPEFKTQSPEFEAQ 146
Query: 108 SPAYTQ 113
S + +
Sbjct: 147 SSKFQE 152
>gi|244539032|dbj|BAH83075.1| hypothetical protein ICMP_215 [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 397
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 54/115 (46%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV A V+PA V+PA V+PA V+PA V+PA V+PA V+PA V+P
Sbjct: 166 TVKTAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNP 225
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
A V+PA V A V A V A V A V A V +A V+
Sbjct: 226 AENTVNPAENTVKTAENTVKTAENTVKTAENTVKTAENTVKTAENTVKTAENTVV 280
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 56/113 (49%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+PA V A V+PA V+PA V A V+PA V+PA V+PA V+PA
Sbjct: 139 VNPAENTVKTAENTVNPAENTVNPAENTVKTAENTVNPAENTVNPAENTVNPAENTVNPA 198
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V+PA V+ A V+ A V+PA V+PA V A V +A V
Sbjct: 199 ENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVKTAENTVKTAENTV 251
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 54/114 (47%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV+PA V A V+PA V+PA V+PA V+PA V+PA V+PA V+P
Sbjct: 159 TVNPAENTVKTAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNP 218
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A V+PA V+ A V A V A V A V A V +A V
Sbjct: 219 AENTVNPAENTVNPAENTVKTAENTVKTAENTVKTAENTVKTAENTVKTAENTV 272
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 55/114 (48%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV A V+PA V+PA V A V+PA V+PA V+PA V+PA V+P
Sbjct: 145 TVKTAENTVNPAENTVNPAENTVKTAENTVNPAENTVNPAENTVNPAENTVNPAENTVNP 204
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A V+PA V+ A V+ A V+PA V A V A V +A V
Sbjct: 205 AENTVNPAENTVNPAENTVNPAENTVNPAENTVKTAENTVKTAENTVKTAENTV 258
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 55/114 (48%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV+PA V+PA V A V+PA V+PA V+PA V+PA V+PA V+P
Sbjct: 152 TVNPAENTVNPAENTVKTAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNP 211
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A V+PA V+ A V+ A V A V A V A V +A V
Sbjct: 212 AENTVNPAENTVNPAENTVNPAENTVKTAENTVKTAENTVKTAENTVKTAENTV 265
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 53/116 (45%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV+PA V+PA V+PA V+PA V+PA V+PA V+PA V+PA V+P
Sbjct: 173 TVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNP 232
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
A V A V A V A V A V A V A V + +L
Sbjct: 233 AENTVKTAENTVKTAENTVKTAENTVKTAENTVKTAENTVKTAENTVVKTEAKKLL 288
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 39 RKDLEDYLSTDEDEATVYT----VSPA-----YTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
KD DY++ D + ++T +SP+ Y + S A V+PA V A V+PA
Sbjct: 98 EKD-RDYINNFFDNSFIHTHGKIISPSNHRIPYIKKSTAALVVNPAENTVKTAENTVNPA 156
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
V+PA V A V+PA V+PA V+PA V+ A V+ A V+PA V
Sbjct: 157 ENTVNPAENTVKTAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTVNPAENTV 216
Query: 150 SPAYTQVSPAYTQVSSAYTQV 170
+PA V+PA V+ A V
Sbjct: 217 NPAENTVNPAENTVNPAENTV 237
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP+Y+ SP Y+ SP Y+ SP Y P SP Y+P SP+Y+ SP Y+ P Y
Sbjct: 1591 SPAYSPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-Y 1649
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SPAY+ S +Y+ S Y+ SP+Y+ SPA
Sbjct: 1650 GPSSPAYSPTSPSYSPTS-PYSPTSPSYSPTSPA 1682
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 52 EATVYTVSP-----------------------------------AYTQVSPAYTQVSPAY 76
++ V +SP Y SP SPAY
Sbjct: 1537 QSDVSGMSPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPG--GASPAY 1594
Query: 77 TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
+ SP+Y+ SP Y P SP Y+P SP Y+ SP Y+ SP+Y+ SP Y+ S Y S
Sbjct: 1595 SPTSPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSP-SQPYGPSS 1653
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
AY+ SP+Y+ SP Y+ SP+Y+ S A
Sbjct: 1654 PAYSPTSPSYSPTSP-YSPTSPSYSPTSPA 1682
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y+ S Y+ +Y+ S Y+ SP YT SP Y P SPA++P Y+ SPA S
Sbjct: 1816 YSPSATYSPNMSSYSPGSQKYSPTSPVYTPTSPNYSPSSPAFSPTGQGYSPSSPA----S 1871
Query: 116 PAYTQVSPAY 125
P Y+ SP+Y
Sbjct: 1872 PTYSPTSPSY 1881
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 25/116 (21%)
Query: 59 SPAYTQVSPAYTQVSPAYTQV---------------SPAYTQVSPAYIPV---SP---AY 97
SP YT SP Y+ SP Y+ S + SP Y P SP +Y
Sbjct: 1770 SPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSPSATYSPNMSSY 1829
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
+P S Y+ SP YT SP Y+ SPA++ Y+ S A SP Y+ SP+Y
Sbjct: 1830 SPGSQKYSPTSPVYTPTSPNYSPSSPAFSPTGQGYSPSSPA----SPTYSPTSPSY 1881
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 87 SPAYIPVSPAYTPVSPAYTQV---------------SPAYTQVSPAYTQVSPAYTQVSLA 131
SP Y P SP Y+P SP Y+ S + SP Y+ S Y+ +
Sbjct: 1770 SPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSP-SATYSPNMSS 1828
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S Y+ SP YT SP Y+ SPA++ Y+
Sbjct: 1829 YSPGSQKYSPTSPVYTPTSPNYSPSSPAFSPTGQGYS 1865
>gi|423711700|ref|ZP_17686005.1| hypothetical protein MCQ_00569, partial [Bartonella washoensis
Sb944nv]
gi|395413500|gb|EJF79967.1| hypothetical protein MCQ_00569, partial [Bartonella washoensis
Sb944nv]
Length = 472
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS----------- 108
PA T V PA T V PA T V PA T V V PA T V PA T V+
Sbjct: 2 PAATDVPPAATDVPPAATDVPPAATDVPSVATDVPPAATDVVPAATDVAPAATDAAPAAT 61
Query: 109 ---PAYTQVSPAYTQVSPAYTQVSLAYTQV-SLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
PA T V PA T V+PA T V T V A T V PA T V PA T V+PA T V+
Sbjct: 62 DVPPAATDVPPAATDVAPAATDVPSVATDVPPAAATDVPPAATDVVPAATDVAPAATDVA 121
Query: 165 SAYTQV 170
A T V
Sbjct: 122 PAATDV 127
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVS--------------PAYTPVSPA 103
V PA T V PA T V T V PA T V PA V+ PA T V PA
Sbjct: 14 VPPAATDVPPAATDVPSVATDVPPAATDVVPAATDVAPAATDAAPAATDVPPAATDVPPA 73
Query: 104 YTQVSPAYTQVSPAYTQVSPAY-TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
T V+PA T V T V PA T V A T V A T V+PA T V+PA T V
Sbjct: 74 ATDVAPAATDVPSVATDVPPAAATDVPPAATDVVPAATDVAPAATDVAPAATDV 127
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP YT SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 1845 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPT 1904
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP Y+ S + +Y+ SP Y+ SP Y+ SP
Sbjct: 1905 SPTYSPTSPKGS----SYSPTSPGYSPSSPTYSPTSP 1937
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
Y+ SP YT SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1845 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPT 1904
Query: 136 SLAYTQVSP---AYTQVSPAYTQVSPAYTQVS 164
S Y+ SP +Y+ SP Y+ SP Y+ S
Sbjct: 1905 SPTYSPTSPKGSSYSPTSPGYSPSSPTYSPTS 1936
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP---AYTQVSPAYTQVS 115
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP +Y+ SP Y+ S
Sbjct: 1870 SPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSSYSPTSPGYSPSS 1929
Query: 116 PAYTQVSP 123
P Y+ SP
Sbjct: 1930 PTYSPTSP 1937
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP YTP SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+
Sbjct: 1845 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPT 1904
Query: 150 SPAYTQVSP---AYTQVSSAYT 168
SP Y+ SP +Y+ S Y+
Sbjct: 1905 SPTYSPTSPKGSSYSPTSPGYS 1926
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 13/124 (10%)
Query: 58 VSPAYTQVSPAY--------TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
VSPAYT SPA+ + SP Y+ SP SP + P SP ++P SP ++ SP
Sbjct: 1576 VSPAYTPTSPAWGGASPWMPSGTSPGYSPTSPRMGLTSPRFSPASPNFSPASPNFSPASP 1635
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYT-QVSLA----YTQVSPAYTQVSPAYTQVSPAYTQVS 164
A++ SP+++ SP ++ S Y+ + LA Y+ SPA + SP ++ SPA++ S
Sbjct: 1636 AFSPTSPSFSPASPRFSPSSPNYSAGIGLATSPRYSPTSPAMSPSSPKFSPASPAFSPAS 1695
Query: 165 SAYT 168
Y+
Sbjct: 1696 PKYS 1699
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 26/136 (19%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP SP ++ SP ++ SP + P SPA++P SP+++ SP ++ SP Y
Sbjct: 1599 SPGYSPTSPRMGLTSPRFSPASPNFSPASPNFSPASPAFSPTSPSFSPASPRFSPSSPNY 1658
Query: 119 TQ--------------------------VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ SPA++ S Y+ + ++ SPA++ SP
Sbjct: 1659 SAGIGLATSPRYSPTSPAMSPSSPKFSPASPAFSPASPKYSPATQRWSPQSPAFSPASPK 1718
Query: 153 YTQVSPAYTQVSSAYT 168
Y+ SPAY+ S Y+
Sbjct: 1719 YSPASPAYSPTSPQYS 1734
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQ-----VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
SP+++ SP ++ SP Y+ SP Y+ SPA P SP ++P SPA++ SP Y+
Sbjct: 1641 SPSFSPASPRFSPSSPNYSAGIGLATSPRYSPTSPAMSPSSPKFSPASPAFSPASPKYSP 1700
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ ++ SPA++ S Y+ S AY+ SP Y+ SP + SP +
Sbjct: 1701 ATQRWSPQSPAFSPASPKYSPASPAYSPTSPQYSPTSPQTSPQSPQW 1747
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 93 VSPAYTPVSPAY--------TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
VSPAYTP SPA+ + SP Y+ SP SP ++ S ++ S ++ SP
Sbjct: 1576 VSPAYTPTSPAWGGASPWMPSGTSPGYSPTSPRMGLTSPRFSPASPNFSPASPNFSPASP 1635
Query: 145 AYTQVSPAYTQVSPAYTQVSSAYTQVI 171
A++ SP+++ SP ++ S Y+ I
Sbjct: 1636 AFSPTSPSFSPASPRFSPSSPNYSAGI 1662
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SPAY+ SP+Y SPAY+ SP+Y P SPAY+P SP+Y SPAY+ SPAY+ SP+Y
Sbjct: 1561 SPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSY 1620
Query: 126 TQVS 129
+ S
Sbjct: 1621 SPTS 1624
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 70/159 (44%), Gaps = 49/159 (30%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA- 117
SP+Y SPAY+ SP+Y SPAY+ SP+Y P SPAY+P SPAY+ SP+Y+ SP
Sbjct: 1568 SPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQY 1627
Query: 118 ------------------------------------------------YTQVSPAYTQVS 129
Y+ SP+Y+ S
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTS 1687
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S +Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1688 PQYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1726
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 49/158 (31%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA-------- 110
SPAY+ SP+Y SPAY+ SP+Y SPAY P SPAY+P SP+Y+ SP
Sbjct: 1575 SPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSY 1634
Query: 111 -----------------------------------------YTQVSPAYTQVSPAYTQVS 129
Y+ SP+Y+ SP Y+ S
Sbjct: 1635 SPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTS 1694
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y
Sbjct: 1695 PSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPGSPGY 1732
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SPAY+ SP+Y SPAY P SP+Y P SPAY+ SP+Y SPAY+ SPAY+ S +Y
Sbjct: 1561 SPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSY 1620
Query: 133 TQVS 136
+ S
Sbjct: 1621 SPTS 1624
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 44/65 (67%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SPAY+ SP+Y P SPAY+P SP+Y SPAY+ SP+Y SPAY+ S AY+ S +Y
Sbjct: 1561 SPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSY 1620
Query: 140 TQVSP 144
+ SP
Sbjct: 1621 SPTSP 1625
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SPAY P SP+Y P SPAY+ SP+Y SPAY+ SP+Y S AY+ S AY+ SP+Y
Sbjct: 1561 SPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSY 1620
Query: 147 TQVSP 151
+ SP
Sbjct: 1621 SPTSP 1625
>gi|301778825|ref|XP_002924835.1| PREDICTED: zinc finger protein 768-like, partial [Ailuropoda
melanoleuca]
Length = 535
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 43 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPEFEPHSPRY 102
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y S Y SP Y SP Y SP Y + +
Sbjct: 103 EPQSPGYDPKSPGYEPRSPGYEPKSPGYEPQSPGYESQSPGYEPQNPEF----------- 151
Query: 179 RESNSRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVH 215
++S +EA E M P+ L I +GVH
Sbjct: 152 ---KTQSPEFEAQSSKVQEGAEMLLNPEEKNPLSIPLGVH 188
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 18/124 (14%)
Query: 59 SPAYTQVSPAYTQV---SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPAY+ SPAY Q SP+Y+ SP ++ SP Y P SP+++P SPA++ SP+Y+ S
Sbjct: 1607 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTS 1666
Query: 116 PAYTQV---------SPAYTQVSLAYTQVS-LAYTQVSPAYTQ-----VSPAYTQVSPAY 160
PA SP YT S ++ S +Y+ SP ++ SPAY+ SPAY
Sbjct: 1667 PAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNFSGSPTSPTSPAYSPTSPAY 1726
Query: 161 TQVS 164
+ S
Sbjct: 1727 SPTS 1730
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP ++ SP + P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y+ S ++
Sbjct: 1593 SPGFSPASPTFQPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNYSPTSPSF 1648
Query: 140 TQVSPAYTQVSPAYTQVSPA 159
+ SPA++ SP+Y+ SPA
Sbjct: 1649 SPASPAFSPTSPSYSPTSPA 1668
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV---------SP 109
SP+Y+ SP ++ SP Y+ SP+++ SPA+ P SP+Y+P SPA SP
Sbjct: 1624 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGARHLSPTSPTSP 1683
Query: 110 AYTQVSPAYTQVSP-AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
YT SP ++ SP +Y+ S ++ + T SPAY+ SPAY+ SP
Sbjct: 1684 KYTPTSPGWSPTSPQSYSPTSPNFSGSPTSPT--SPAYSPTSPAYSPTSP 1731
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAY---TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
SP ++ SP + SPAY P SPAY +P SP+Y+ SP ++ SP Y+ SP+++ S
Sbjct: 1593 SPGFSPASPTFQPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPAS 1652
Query: 130 LAYTQVSLAYTQVSPAYTQV---------SPAYTQVSPAYTQVS 164
A++ S +Y+ SPA SP YT SP ++ S
Sbjct: 1653 PAFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTS 1696
>gi|395747741|ref|XP_002826388.2| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 768 [Pongo
abelii]
Length = 949
Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 51/164 (31%), Positives = 64/164 (39%), Gaps = 24/164 (14%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 464 SPGFELQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFETQSPRY 523
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y SP Y SP Y SP Y SS Y
Sbjct: 524 EPQSP--------------GYEPRSPGYEPRSPGYEPRSPGYESESSRYES-------QN 562
Query: 179 RESNSRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVHCHDS 219
E ++S +EA F E M P+ L I++GVH DS
Sbjct: 563 PELKTQSPEFEAQSSKFQEGAEMLLNPEEKSPLNISVGVHPLDS 606
Score = 40.4 bits (93), Expect = 0.54, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 28/73 (38%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
+D T SP Y SP Y SP Y SP Y SP Y S Y +P
Sbjct: 509 SDSQSPEFETQSPRYEPQSPGYEPRSPGYEPRSPGYEPRSPGYESESSRYESQNPELKTQ 568
Query: 108 SPAYTQVSPAYTQ 120
SP + S + +
Sbjct: 569 SPEFEAQSSKFQE 581
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 20/138 (14%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1598 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1657
Query: 119 TQVSPAYT----QVSLA----------------YTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ Q+S A Y+ S Y+ SPAY+ SPAY+ SP
Sbjct: 1658 SPASPRYSPTPAQMSPASPRYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAYSPTSP 1717
Query: 159 AYTQVSSAYTQVILNKIR 176
++ S A N R
Sbjct: 1718 QWSPSSPAQNGTANNTTR 1735
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 59 SPAYTQVSP-AYTQVSPAYTQVSPAYTQVSP--------------AYIPVSPAYTPVSPA 103
P Y+ SP AY+ SP Y SP SP + P SP Y+P SPA
Sbjct: 1549 GPGYSPSSPNAYSPTSP-YVPQSPFGGATSPFGTSPYATSPFFDRSRGPTSPTYSPTSPA 1607
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
SP Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP Y+
Sbjct: 1608 LNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYS 1665
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 68 AYTQVSPAYTQVSP-AYTQVSPAYIPVSP---------------------AYTPVSPAYT 105
A + P Y+ SP AY+ SP Y+P SP + P SP Y+
Sbjct: 1544 AMSPAGPGYSPSSPNAYSPTSP-YVPQSPFGGATSPFGTSPYATSPFFDRSRGPTSPTYS 1602
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SPA SP Y+ SP Y+ S +++ S Y+ SP+++ SP Y+ SP+++ S
Sbjct: 1603 PTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASP 1662
Query: 166 AYT 168
Y+
Sbjct: 1663 RYS 1665
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP ++ SPA+ SPAY+ SPAY Q SP +Y P SP ++P SP Y+ SP + S
Sbjct: 1603 SPGFSPASPAFGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLSPAS 1662
Query: 116 PAYTQVSPAYTQVS--LAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P ++ SP+Y+ S L + + SP YT SP ++ SP
Sbjct: 1663 PVFSPTSPSYSPTSPALGAGRNMSPTSPTSPKYTPTSPGWSPTSP 1707
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP T SP ++ SPA+ P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y
Sbjct: 1598 SPRMT--SPGFSPASPAFGPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ S + SP ++ SP+Y+ SPA
Sbjct: 1652 SPTSPNLSPASPVFSPTSPSYSPTSPA 1678
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 31/131 (23%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP---AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPA+ SPAY+ SPAY Q SP +Y+ SP + P SP Y+P SP + SP ++ S
Sbjct: 1610 SPAFGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLSPASPVFSPTS 1669
Query: 116 PAYTQVSPAYTQ---------VSLAYTQVSLAYTQVSP-------------------AYT 147
P+Y+ SPA S YT S ++ SP AY+
Sbjct: 1670 PSYSPTSPALGAGRNMSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNIGGSPTSPGGAYS 1729
Query: 148 QVSPAYTQVSP 158
SP Y+ SP
Sbjct: 1730 PTSPTYSPTSP 1740
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP T SP + P SPA+ P SPAY+ SPAY Q SP SP+Y+ S ++ S Y
Sbjct: 1598 SPRMT--SPGFSPASPAFGPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNY 1651
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP + SP ++ SP+Y+ S A
Sbjct: 1652 SPTSPNLSPASPVFSPTSPSYSPTSPA 1678
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 69/108 (63%), Gaps = 11/108 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP--AYTQVSP 116
SPAY+ SPAY+ SPAY+ SPAY+ SPAY P SPAY+P SPAY+ SP AY+ SP
Sbjct: 1648 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSP 1707
Query: 117 --AYTQVSPAYTQVSLAYTQVSLAYTQVSP--AYTQVSP--AYTQVSP 158
AY SP+ V+ + + ++AY+ SP AY+ SP AY+ SP
Sbjct: 1708 NVAY---SPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSP 1752
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
+ P SPAY+P SP VSP SPAY+ SPAY+ S AY+ S AY+ SPAY+
Sbjct: 1629 FSPSSPAYSPTSPRL--VSP----TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1682
Query: 150 SPAYTQVSPAYT 161
SPAY+ SPAY+
Sbjct: 1683 SPAYSPTSPAYS 1694
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 80 SPAYTQVSPAYIPVSPAYT---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
SPAY+ SP VSP P SPAY+ SPAY+ SPAY+ SPAY+ S AY+ S
Sbjct: 1633 SPAYSPTSPRL--VSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1690
Query: 137 LAYTQVSP--AYTQVSP--AYTQVSP 158
AY+ SP AY+ SP AY+ SP
Sbjct: 1691 PAYSPSSPNVAYSPSSPNVAYSPSSP 1716
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 18/115 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP--AYTQVSP--AYIPVSP--AYTPVSP--AYTQVSP- 109
SPAY+ SPAY+ SPAY+ SP AY+ SP AY P SP AY+P SP AY+ SP
Sbjct: 1676 SPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPN 1735
Query: 110 -AYTQVSP--AYTQVSPAYTQVSLAYTQVSLAYTQVSP--AYTQVSP-AYTQVSP 158
AY+ SP AY SP+ V+ + + ++AY+ SP AY+ SP AY+ SP
Sbjct: 1736 VAYSPSSPNVAY---SPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPVAYSPSSP 1787
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 20/117 (17%)
Query: 59 SPAYTQVSPAYTQVSP--AYTQVSP--AYTQVSP--AYIPVSP--AYTPVSP--AYTQVS 108
SPAY+ SPAY+ SP AY+ SP AY+ SP AY P SP AY+P SP AY+ S
Sbjct: 1683 SPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSS 1742
Query: 109 P--AYTQVSP--AYTQVSPAYTQVSLAYTQVSLAYTQVSP-AYTQVSP--AYTQVSP 158
P AY+ SP AY SP+ V+ + + ++AY+ SP AY+ SP AY+ SP
Sbjct: 1743 PNVAYSPSSPNVAY---SPSSPNVAYSPSSPNVAYSPSSPVAYSPSSPNVAYSPSSP 1796
>gi|213556944|gb|ACJ53763.1| RNA polymerase II, partial [Plasmodium vivax]
Length = 218
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQ 111
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Y+ SP S + Y SP ++ SPAY+ SP Y Q +A ++
Sbjct: 112 YSPSSPVPNNPSSPHYS---PYAIASPKFSPTSPAYSISSPVYDQSGNARSK 160
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 86 VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
VSP Y SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQ 111
Query: 146 YTQVSP-----------AYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHE 194
Y+ SP Y SP ++ S AY+ I + + + N+RS +
Sbjct: 112 YSPSSPVPNNPSSPHYSPYAIASPKFSPTSPAYS--ISSPVY-DQSGNARSKSQHPLSPA 168
Query: 195 WVWMSWYPDINPTLPIAMGVHCHD 218
++ S P+ + H D
Sbjct: 169 YILQS---------PVQVKQHIQD 183
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP-AYTQVSPAYI-PVSPAYTPVSPAYTQVSPA-YTQVS 115
SP SPAY+ SP ++ SP Y+ SP + P SP Y+P SP+Y+ SPA + S
Sbjct: 1613 SPIAGLTSPAYSPTSPGFSPTSPNGYSPQSPNFGSPASPNYSPASPSYSPASPAGMSPTS 1672
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
P Y+ SP + +S Y S +++ SPAY+ SP Y+ SP ++ S A+ Q
Sbjct: 1673 PRYSPASPGASPMSPKYPPASPSFSPASPAYSPASPNYSPSSPTWSPTSPAHDQ------ 1726
Query: 176 RPGRESNSRSSAYE 189
+N+RSSAY+
Sbjct: 1727 --NGPTNNRSSAYQ 1738
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 18/121 (14%)
Query: 59 SPAYTQVSPAYTQ----------------VSPAYTQVSPAYTQVSPAYI-PVSPAYTPVS 101
SPAY+ SP ++ SP Y+ SP+Y+ SPA + P SP Y+P S
Sbjct: 1620 SPAYSPTSPGFSPTSPNGYSPQSPNFGSPASPNYSPASPSYSPASPAGMSPTSPRYSPAS 1679
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P + +SP Y SP+++ SPAY+ S Y+ S ++ SPA+ Q P + S AY
Sbjct: 1680 PGASPMSPKYPPASPSFSPASPAYSPASPNYSPSSPTWSPTSPAHDQNGPTNNR-SSAYQ 1738
Query: 162 Q 162
Q
Sbjct: 1739 Q 1739
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
A + SP Y+ SP + +SP Y SP+++ SPAY P SP Y+P SP ++ SPA+
Sbjct: 1666 AGMSPTSPRYSPASPGASPMSPKYPPASPSFSPASPAYSPASPNYSPSSPTWSPTSPAHD 1725
Query: 113 QVSPAYTQVSPAYTQ 127
Q P + S AY Q
Sbjct: 1726 QNGPTNNR-SSAYQQ 1739
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP Y SP+++ SPAY+ SP Y+ P SP ++P SPA+ Q P + S A
Sbjct: 1685 MSPKYPPASPSFSPASPAYSPASPNYS-------PSSPTWSPTSPAHDQNGPTNNR-SSA 1736
Query: 118 YTQVSPAY 125
Y Q SP++
Sbjct: 1737 YQQ-SPSW 1743
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 73 SPAYTQVSP-AYTQVSPAYIPVSPAYTPVSPAYTQ-------------VSPAYTQVSPAY 118
P Y+ SP AY+ SP +P SP P SP Q SP Y+ SP
Sbjct: 1557 GPGYSPSSPNAYSPTSPGMVPRSPYGAPTSPFSNQYATSPFYDSRRQATSPTYSPTSPIA 1616
Query: 119 TQVSPAYTQVSLAYTQVS-LAYTQVSPAYTQ-VSPAYTQVSPAYTQVSSA 166
SPAY+ S ++ S Y+ SP + SP Y+ SP+Y+ S A
Sbjct: 1617 GLTSPAYSPTSPGFSPTSPNGYSPQSPNFGSPASPNYSPASPSYSPASPA 1666
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 59 SPAYTQVSPAYTQVSP--------AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
SPAYT SP ++ SP Y+ SP SP + P SP ++P SP ++ SP+
Sbjct: 1577 SPAYTPTSPTWSGASPWVASGTSPGYSPTSPRMGATSPRFSPASPNFSPASPNFSPTSPS 1636
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
++ SP ++ SP Y+ LA S Y+ SPA + SP Y+ SPA++ S Y+
Sbjct: 1637 FSPASPRFSPSSPNYSPAGLA---TSPRYSPTSPAMSPSSPKYSPASPAFSPASPKYS 1691
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
SPA SP Y+ SPA + SP Y+ SPA+ P SP Y+P +
Sbjct: 1652 SPAGLATSPRYSPTSPAMSPSSPKYSPASPAFSPASPKYSPTT 1694
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT----QVSPAYTQV 114
SP+++ SP ++ SP Y SPA SP Y P SPA +P SP Y+ SPA +
Sbjct: 1634 SPSFSPASPRFSPSSPNY---SPAGLATSPRYSPTSPAMSPSSPKYSPASPAFSPASPKY 1690
Query: 115 SP 116
SP
Sbjct: 1691 SP 1692
>gi|428166785|gb|EKX35754.1| hypothetical protein GUITHDRAFT_79495, partial [Guillardia theta
CCMP2712]
Length = 144
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 45/110 (40%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS Y S Y VS Y VS Y VS Y VS Y VS Y VS Y VS
Sbjct: 16 VSFCYDLESFCYDLVSFCYDLVSFCYDLVSLCYDLVSLCYDLVSFCYDLVSFCYDLVSFC 75
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Y S Y SL Y VSL Y VS Y VS Y S Y S Y
Sbjct: 76 YDLESFCYDLESLCYDLVSLCYDLVSFCYDLVSFCYDLESFCYDLESFCY 125
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 36/82 (43%)
Query: 86 VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
VS Y VS Y VS Y S Y VS Y VS Y VSL Y VSL Y VS
Sbjct: 2 VSFCYDLVSFCYDLVSFCYDLESFCYDLVSFCYDLVSFCYDLVSLCYDLVSLCYDLVSFC 61
Query: 146 YTQVSPAYTQVSPAYTQVSSAY 167
Y VS Y VS Y S Y
Sbjct: 62 YDLVSFCYDLVSFCYDLESFCY 83
>gi|340712191|ref|XP_003394647.1| PREDICTED: hypothetical protein LOC100648429 [Bombus terrestris]
Length = 3385
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 52 EATVYTVSPAY--TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
EAT P+ PA T+ PA T+ A T+ PA PA T PA T+ P
Sbjct: 2932 EATTKEAEPSQPSEGTQPAVTEGLPAVTEAQSAVTEAQPAVTEAQPAVTEAQPAVTEAQP 2991
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
A T+ PA T+ PA T+ A T+ A T+ PA T+ PA T+ PA T+
Sbjct: 2992 AVTEAQPAVTEAQPAVTEAQSAVTEAQPAVTEAQPAVTETQPAVTEAQPAVTE 3044
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA T+ A T+ PA T+ PA T+ PA PA T PA T+ PA T+ A T
Sbjct: 2956 PAVTEAQSAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQSAVT 3015
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ PA T+ A T+ A T+ PA T+ P + P+
Sbjct: 3016 EAQPAVTEAQPAVTETQPAVTEAQPAVTETQPGIPEAQPS 3055
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 81 PAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT 140
PA T+ PA A T PA T+ PA T+ PA T+ PA T+ A T+ A T
Sbjct: 2949 PAVTEGLPAVTEAQSAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVT 3008
Query: 141 QVSPAYTQVSPAYTQVSPAYTQVSSAYT--QVILNKIRPG 178
+ A T+ PA T+ PA T+ A T Q + + +PG
Sbjct: 3009 EAQSAVTEAQPAVTEAQPAVTETQPAVTEAQPAVTETQPG 3048
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 18/129 (13%)
Query: 54 TVYTVSPAYTQVSPAYTQV---SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
T + SP Y+ SPAY + SP+Y+ SP ++ SP Y P SP+++P SPA++ SP+
Sbjct: 1602 TFQSTSPVYSPTSPAYGRASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPS 1661
Query: 111 YTQVSPAYTQV---------SPAYTQVSLAYTQVS-LAYTQVSPAYTQ-----VSPAYTQ 155
Y+ SPA + SP YT S ++ S +Y+ SP ++ SPAY+
Sbjct: 1662 YSPTSPAISGARHLSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNFSGSPTSPTSPAYSP 1721
Query: 156 VSPAYTQVS 164
SPAY+ S
Sbjct: 1722 TSPAYSPTS 1730
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 13/109 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP ++ SP + SP Y+ SPAY + SP SP+Y+P SP ++ SP Y+ SP++
Sbjct: 1593 SPGFSPSSPTFQSTSPVYSPTSPAYGRASP----TSPSYSPTSPGFSPTSPNYSPTSPSF 1648
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQV---------SPAYTQVSPAYTQVSP 158
+ SPA++ S +Y+ S A + SP YT SP ++ SP
Sbjct: 1649 SPASPAFSPTSPSYSPTSPAISGARHLSPTSPTSPKYTPTSPGWSPTSP 1697
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 12/110 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV---------SP 109
SP+Y+ SP ++ SP Y+ SP+++ SPA+ P SP+Y+P SPA + SP
Sbjct: 1624 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAISGARHLSPTSPTSP 1683
Query: 110 AYTQVSPAYTQVSP-AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
YT SP ++ SP +Y+ S ++ + T SPAY+ SPAY+ SP
Sbjct: 1684 KYTPTSPGWSPTSPQSYSPTSPNFSGSPTSPT--SPAYSPTSPAYSPTSP 1731
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP ++ SP + SP Y+P SPAY + SP SP+Y+ SP ++ S Y+ S ++
Sbjct: 1593 SPGFSPSSPTFQSTSPVYSPTSPAYGRASP----TSPSYSPTSPGFSPTSPNYSPTSPSF 1648
Query: 140 TQVSPAYTQVSPAYTQVSPAYT 161
+ SPA++ SP+Y+ SPA +
Sbjct: 1649 SPASPAFSPTSPSYSPTSPAIS 1670
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 49/158 (31%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA-------- 110
SPAY+ SP+Y SPAY+ SP+Y SPAY P SPAY+P SP+Y+ SP
Sbjct: 1561 SPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSY 1620
Query: 111 -----------------------------------------YTQVSPAYTQVSPAYTQVS 129
Y+ SP+Y+ SP Y+ S
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTS 1680
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y
Sbjct: 1681 PSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPGSPGY 1718
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 49/152 (32%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP--------- 116
SPAY+ SP+Y SPAY+ SP+Y P SPAY+P SPAY+ SP+Y+ SP
Sbjct: 1561 SPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSY 1620
Query: 117 ----------------------------------------AYTQVSPAYTQVSLAYTQVS 136
Y+ SP+Y+ S Y+ S
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTS 1680
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1681 PSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1712
>gi|115764762|ref|XP_001195120.1| PREDICTED: uncharacterized protein LOC756441 [Strongylocentrotus
purpuratus]
Length = 650
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA T+V PA T+ PA T+ +PA T+ P +PA T PA T+ PA + +PA
Sbjct: 284 TPAATEVKPAATEEKPAVTEETPAATEEKPVASDETPAATEDKPAATEEKPAASNETPAA 343
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
T+ PA T + A + + A T+ PA T +PA T+ PA + + A T+
Sbjct: 344 TEEKPAATDETPAASNETPAATEEKPAATDETPAATEEKPASSDETPAATE 394
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
ED + ED+ T PA + P T+ P T+ +PA T+ PA PA T
Sbjct: 435 TEDTPESPEDKPTTAEDKPATPEDKPGTTEDKPVATEDTPATTEDKPATAEEKPATTEDK 494
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P T+ P T+ +PA T+ PA T+ A T+ A T+ +PA T+ PA T+ +PA T
Sbjct: 495 PETTEDKPVATEDTPATTEDKPAATEDKPAATEDKSAATEDTPATTEDKPATTEDAPATT 554
Query: 162 QVSSAYTQ 169
+ + A T+
Sbjct: 555 EDAPATTE 562
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%)
Query: 43 EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
ED +T ED+ P T+ P T+ +PA T+ PA + PA P T P
Sbjct: 443 EDKPTTAEDKPATPEDKPGTTEDKPVATEDTPATTEDKPATAEEKPATTEDKPETTEDKP 502
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
T+ +PA T+ PA T+ PA T+ A T+ + A T+ PA T+ +PA T+ +PA T+
Sbjct: 503 VATEDTPATTEDKPAATEDKPAATEDKSAATEDTPATTEDKPATTEDAPATTEDAPATTE 562
Query: 163 VSSAYTQ 169
A T+
Sbjct: 563 DKPAATE 569
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
ED +T ED+ PA T+ P T+ P T+ +PA T+ PA PA T
Sbjct: 470 TEDTPATTEDKPATAEEKPATTEDKPETTEDKPVATEDTPATTEDKPAATEDKPAATEDK 529
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
A T+ +PA T+ PA T+ +PA T+ + A T+ A T+ PA T+ P T+ PA T
Sbjct: 530 SAATEDTPATTEDKPATTEDAPATTEDAPATTEDKPAATEDKPAATEDKPPTTEDKPATT 589
Query: 162 Q 162
+
Sbjct: 590 E 590
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 65/128 (50%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
ED +T ED+ P T+ +PA T+ PA + PA T+ P P T +
Sbjct: 449 AEDKPATPEDKPGTTEDKPVATEDTPATTEDKPATAEEKPATTEDKPETTEDKPVATEDT 508
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
PA T+ PA T+ PA T+ A T+ + A T+ A T+ +PA T+ +PA T+ PA T
Sbjct: 509 PATTEDKPAATEDKPAATEDKSAATEDTPATTEDKPATTEDAPATTEDAPATTEDKPAAT 568
Query: 162 QVSSAYTQ 169
+ A T+
Sbjct: 569 EDKPAATE 576
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
ED+ + PA T+ +PA T+ PA + +PA T+ PA PA T PA T+ P
Sbjct: 219 EDKPSAAEEKPAATEETPAATEEKPAASDETPAATEDKPAATEEKPAVTEEIPAATEEKP 278
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ +PA T+V PA T+ A T+ + A T+ P + +PA T+ PA T+
Sbjct: 279 VASDETPAATEVKPAATEEKPAVTEETPAATEEKPVASDETPAATEDKPAATE 331
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA T+ P + +PA T+V PA T+ PA +PA T P + +PA T+ PA T
Sbjct: 271 PAATEEKPVASDETPAATEVKPAATEEKPAVTEETPAATEEKPVASDETPAATEDKPAAT 330
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ PA + + A T+ A T +PA + +PA T+ PA T + A T+
Sbjct: 331 EEKPAASNETPAATEEKPAATDETPAASNETPAATEEKPAATDETPAATE 380
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
ED S E++ +PA T+ PA + +PA T+ PA T+ PA PA T
Sbjct: 218 TEDKPSAAEEKPAATEETPAATEEKPAASDETPAATEDKPAATEEKPAVTEEIPAATEEK 277
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P + +PA T+V PA T+ PA T+ + A T+ + +PA T+ PA T+ PA +
Sbjct: 278 PVASDETPAATEVKPAATEEKPAVTEETPAATEEKPVASDETPAATEDKPAATEEKPAAS 337
Query: 162 QVSSAYTQ 169
+ A T+
Sbjct: 338 NETPAATE 345
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA T+ PA T+ PA T+ PA T+ P +PA T V PA T+ PA T+ +PA
Sbjct: 249 TPAATEDKPAATEEKPAVTEEIPAATEEKPVASDETPAATEVKPAATEEKPAVTEETPAA 308
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
T+ P + + A T+ A T+ PA + +PA T+ PA T + A
Sbjct: 309 TEEKPVASDETPAATEDKPAATEEKPAASNETPAATEEKPAATDETPA 356
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA T+ P+ + PA T+ +PA T+ PA +PA T PA T+ PA T+ PA
Sbjct: 214 TPATTEDKPSAAEEKPAATEETPAATEEKPAASDETPAATEDKPAATEEKPAVTEEIPAA 273
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
T+ P + + A T+V A T+ PA T+ +PA T+ P + + A T+
Sbjct: 274 TEEKPVASDETPAATEVKPAATEEKPAVTEETPAATEEKPVASDETPAATE 324
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 43 EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
ED T ED+ +PA T+ PA + PA T+ P T+ P +PA T P
Sbjct: 457 EDKPGTTEDKPVATEDTPATTEDKPATAEEKPATTEDKPETTEDKPVATEDTPATTEDKP 516
Query: 103 AYTQVSPAYTQV-------SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
A T+ PA T+ +PA T+ PA T+ + A T+ + A T+ PA T+ PA T+
Sbjct: 517 AATEDKPAATEDKSAATEDTPATTEDKPATTEDAPATTEDAPATTEDKPAATEDKPAATE 576
Query: 156 VSPAYTQVSSAYTQ 169
P T+ A T+
Sbjct: 577 DKPPTTEDKPATTE 590
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
E+ +T ED+ P T+ +PA T+ PA T+ PA T+ A +PA T
Sbjct: 484 AEEKPATTEDKPETTEDKPVATEDTPATTEDKPAATEDKPAATEDKSAATEDTPATTEDK 543
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
PA T+ +PA T+ +PA T+ PA T+ A T+ T+ PA T+ +P + +PA
Sbjct: 544 PATTEDAPATTEDAPATTEDKPAATEDKPAATEDKPPTTEDKPATTEGAPVTKEETPASA 603
Query: 162 QVSSAYTQVILNKIRPGRE 180
+ ++ + + PG E
Sbjct: 604 EAPNSEEKTATEET-PGTE 621
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V +PA T+ P + +PA T+ PA T+ PA +PA T PA T +PA +
Sbjct: 301 VTEETPAATEEKPVASDETPAATEDKPAATEEKPAASNETPAATEEKPAATDETPAASNE 360
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+PA T+ PA T + A T+ A + +PA T+ P+ PA + A T+
Sbjct: 361 TPAATEEKPAATDETPAATEEKPASSDETPAATEEKPSTADEKPAADEEKPAATE 415
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 55 VYTVSPAYTQVSPAYTQV-------SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
V PA + +PA T+ +PA T+ P+ + PA +PA T PA +
Sbjct: 189 VTEEKPAASDETPAATEEKTSASDETPATTEDKPSAAEEKPAATEETPAATEEKPAASDE 248
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+PA T+ PA T+ PA T+ A T+ + +PA T+V PA T+ PA T+ + A
Sbjct: 249 TPAATEDKPAATEEKPAVTEEIPAATEEKPVASDETPAATEVKPAATEEKPAVTEETPAA 308
Query: 168 TQ 169
T+
Sbjct: 309 TE 310
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA T+ PA T+ PA + +PA T+ PA +PA + +PA T+ PA T +PA
Sbjct: 319 TPAATEDKPAATEEKPAASNETPAATEEKPAATDETPAASNETPAATEEKPAATDETPAA 378
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
T+ PA + + A T+ + PA + PA T+ P
Sbjct: 379 TEEKPASSDETPAATEEKPSTADEKPAADEEKPAATEDKP 418
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA T+ PA + +PA T+ PA T +PA +PA T PA T +PA T+ PA +
Sbjct: 327 PAATEEKPAASNETPAATEEKPAATDETPAASNETPAATEEKPAATDETPAATEEKPASS 386
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+PA T+ + A + PA T+ P + SP + S A T+
Sbjct: 387 DETPAATEEKPSTADEKPAADEEKPAATEDKPPAGEDSPDGAKDSPASTE 436
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SPA T+ +P + P + PA P T P T+ +PA T+ PA
Sbjct: 424 SPDGAKDSPASTEDTPESPEDKPTTAEDKPATPEDKPGTTEDKPVATEDTPATTEDKPAT 483
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ PA T+ T+ T+ +PA T+ PA T+ PA T+ SA T+
Sbjct: 484 AEEKPATTEDKPETTEDKPVATEDTPATTEDKPAATEDKPAATEDKSAATE 534
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 2/139 (1%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
ED + E++ +PA T+ PA T +PA + +PA T+ PA +PA T
Sbjct: 323 TEDKPAATEEKPAASNETPAATEEKPAATDETPAASNETPAATEEKPAATDETPAATEEK 382
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA-- 159
PA + +PA T+ P+ PA + A T+ + SP + SPA T+ +P
Sbjct: 383 PASSDETPAATEEKPSTADEKPAADEEKPAATEDKPPAGEDSPDGAKDSPASTEDTPESP 442
Query: 160 YTQVSSAYTQVILNKIRPG 178
+ ++A + + +PG
Sbjct: 443 EDKPTTAEDKPATPEDKPG 461
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
A T+ PA + +PA T+ + +PA T P+ + PA T+ +PA T+ PA +
Sbjct: 188 AVTEEKPAASDETPAATEEKTSASDETPATTEDKPSAAEEKPAATEETPAATEEKPAASD 247
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ A T+ A T+ PA T+ PA T+ P + + A T+V
Sbjct: 248 ETPAATEDKPAATEEKPAVTEEIPAATEEKPVASDETPAATEV 290
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA T+ +P + P + PA + P P T +PA T+ PA + PA
Sbjct: 431 SPASTEDTPESPEDKPTTAEDKPATPEDKPGTTEDKPVATEDTPATTEDKPATAEEKPAT 490
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
T+ P T+ T+ + A T+ PA T+ PA T+ A T+ + A T+
Sbjct: 491 TEDKPETTEDKPVATEDTPATTEDKPAATEDKPAATEDKSAATEDTPATTE 541
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI---PVSPAYTPVS-----------PAYT 105
PA + PA T+ P + SP + SPA P SP P + P T
Sbjct: 404 PAADEEKPAATEDKPPAGEDSPDGAKDSPASTEDTPESPEDKPTTAEDKPATPEDKPGTT 463
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ P T+ +PA T+ PA + A T+ T+ P T+ +PA T+ PA T+
Sbjct: 464 EDKPVATEDTPATTEDKPATAEEKPATTEDKPETTEDKPVATEDTPATTEDKPAATEDKP 523
Query: 166 AYTQ 169
A T+
Sbjct: 524 AATE 527
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA T+ PA T +PA T+ PA + +PA P+ PA + PA T+ P
Sbjct: 361 TPAATEEKPAATDETPAATEEKPASSDETPAATEEKPSTADEKPAADEEKPAATEDKPPA 420
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ SP + S A T+ + + P + PA + P T+
Sbjct: 421 GEDSPDGAKDSPASTEDTPESPEDKPTTAEDKPATPEDKPGTTE 464
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T+ +PA + PA T+ P T A PA + +PA T+ + + +PA T+
Sbjct: 163 TEKTPAAPEEKPATTE-EPVATAEKTAVTEEKPAASDETPAATEEKTSASDETPATTEDK 221
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
P+ + A T+ + A T+ PA + +PA T+ PA T+ A T+ I
Sbjct: 222 PSAAEEKPAATEETPAATEEKPAASDETPAATEDKPAATEEKPAVTEEI 270
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA T +PA T+ PA + +PA T+ P+ PA PA T+ P + SP
Sbjct: 369 PAATDETPAATEEKPASSDETPAATEEKPSTADEKPAADEEKPAATEDKPPAGEDSPDGA 428
Query: 120 QVSPAYTQVSL--------------AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ SPA T+ + A + T+ P T+ +PA T+ PA +
Sbjct: 429 KDSPASTEDTPESPEDKPTTAEDKPATPEDKPGTTEDKPVATEDTPATTEDKPATAEEKP 488
Query: 166 AYTQ 169
A T+
Sbjct: 489 ATTE 492
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA T+ PA + +PA T+ P+ PA PA T P + SP + SPA
Sbjct: 375 TPAATEEKPASSDETPAATEEKPSTADEKPAADEEKPAATEDKPPAGEDSPDGAKDSPAS 434
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
T+ +P + + A + P T+ P T+ +PA T+
Sbjct: 435 TEDTPESPEDKPTTAEDKPATPEDKPGTTEDKPVATEDTPATTE 478
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA T+ P+ PA + PA T+ P SP SPA T+ +P + P
Sbjct: 389 TPAATEEKPSTADEKPAADEEKPAATEDKPPAGEDSPDGAKDSPASTEDTPESPEDKPTT 448
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ PA + T+ T+ +PA T+ PA + PA T+
Sbjct: 449 AEDKPATPEDKPGTTEDKPVATEDTPATTEDKPATAEEKPATTE 492
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+ PA + PA T+ P + SP SPA T +P + P + PA
Sbjct: 397 PSTADEKPAADEEKPAATEDKPPAGEDSPDGAKDSPASTEDTPESPEDKPTTAEDKPATP 456
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ P T+ T+ + A T+ PA + PA T+ P T+
Sbjct: 457 EDKPGTTEDKPVATEDTPATTEDKPATAEEKPATTEDKPETTE 499
>gi|426254581|ref|XP_004020955.1| PREDICTED: zinc finger protein 768 [Ovis aries]
Length = 516
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 60/157 (38%), Gaps = 18/157 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 31 SPGFGPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFEPQSPRY 90
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y S Y SP Y SP Y +P + S +
Sbjct: 91 EPQSPGYEPKSPGYEPRSPGYESQSPRYEPQSPGYEPQNPEFKTQSPEF----------- 139
Query: 179 RESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAMGVH 215
A + F E + P+ L I +GVH
Sbjct: 140 -------EAESSKFQEGAEILLNPEEKNPLSIPLGVH 169
>gi|351711455|gb|EHB14374.1| Zinc finger protein 768 [Heterocephalus glaber]
Length = 571
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 68/167 (40%), Gaps = 17/167 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPDFGPQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN--KIR 176
SP Y S Y SP Y SP Y SP + SS Y L
Sbjct: 122 EPQSP-------GYDPRSPGYEPKSPGYDPKSPEYVSRSPDFESQSSRYESQDLGYEPPN 174
Query: 177 PGRESNS-----RSSAYE---AFFHEWVWMSWYPDINPTLPIAMGVH 215
PG E+ + +S +E + F E M P+ L I +GVH
Sbjct: 175 PGIEAQNPEFKTQSPEFESQSSKFQEGAEMLLNPEEKNPLSIPLGVH 221
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+ SP + SP + SP SP + SP Y P SP Y P SP Y SP Y SP
Sbjct: 88 SRSPGFVPPSPEFAPRSPESDPQSPDFGPQSPRYEPQSPGYDPRSPGYEPKSPGYDPKSP 147
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
Y SP + S Y L Y +P +P + SP + SS + +++LN
Sbjct: 148 EYVSRSPDFESQSSRYESQDLGYEPPNPGIEAQNPEFKTQSPEFESQSSKFQEGAEMLLN 207
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP+Y+ SP Y+ SP Y+ SP Y P SP Y+P SP+Y+ SP Y+ + Y
Sbjct: 1576 SPGYSPTSPSYSPTSPNYSPTSPRYSPTSPNYSPTSPNYSPTSPSYSPTSPLYSPTA-TY 1634
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SPAY+ S +Y+ S Y+ SP+Y+ SPA
Sbjct: 1635 APSSPAYSPTSPSYSPTS-PYSPTSPSYSPTSPA 1667
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y SP SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SP Y+ SP+Y+
Sbjct: 1567 YAAASPG--GASPGYSPTSPSYSPTSPNYSPTSPRYSPTSPNYSPTSPNYSPTSPSYSPT 1624
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
S Y+ + Y SPAY+ SP+Y+ SP Y+ S +Y+
Sbjct: 1625 SPLYSPTA-TYAPSSPAYSPTSPSYSPTSP-YSPTSPSYS 1662
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA- 117
SP Y+ + Y+ +Y+ S Y+ SP Y P SP Y+P SPAY+ Y+ SPA
Sbjct: 1799 SPTYSPTTARYSPNMSSYSPGSQKYSPTSPVYTPTSPHYSPSSPAYSPTGQGYSPSSPAS 1858
Query: 118 --YTQVSPAY 125
Y+ SP+Y
Sbjct: 1859 PTYSPTSPSY 1868
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 56/118 (47%), Gaps = 20/118 (16%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQV---------SPAYIPVSPAYTPV----SPAYT 105
SP YT SP Y+ SP Y+ SP+Y+ ++ SP Y+P SP +
Sbjct: 1755 SPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARYSPNMS 1814
Query: 106 QVSPA---YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SP Y+ SP YT SP Y+ S AY+ Y+ SPA SP Y+ SP+Y
Sbjct: 1815 SYSPGSQKYSPTSPVYTPTSPHYSPSSPAYSPTGQGYSPSSPA----SPTYSPTSPSY 1868
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 87 SPAYIPVSPAYTPVSPAYTQV----------------SPAYTQVSPAYTQVSPAYTQVSL 130
SP Y P SP Y+P SP Y+ + SP Y+ + Y+
Sbjct: 1755 SPQYTPASPQYSPTSPKYSPTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARYSPNMS 1814
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+Y+ S Y+ SP YT SP Y+ SPAY+ Y+
Sbjct: 1815 SYSPGSQKYSPTSPVYTPTSPHYSPSSPAYSPTGQGYS 1852
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 8/104 (7%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
+Y+ + Y SPAY+ SP+Y+ SP Y P SP+Y+P SPAY+ SP+Y+
Sbjct: 1627 LYSPTATYAPSSPAYSPTSPSYSPTSP--------YSPTSPSYSPTSPAYSPTSPSYSPS 1678
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP+Y+ SP+Y+ S +Y+ S YT +P+Y+ SP Y+ SP
Sbjct: 1679 SPSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSP 1722
>gi|170578542|ref|XP_001894451.1| hypothetical protein Bm1_14930 [Brugia malayi]
gi|158598956|gb|EDP36709.1| hypothetical protein Bm1_14930 [Brugia malayi]
Length = 834
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 63/112 (56%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V +P +Q +P +Q +PA +Q +P +Q +P + +PA + +P +Q +PA +Q
Sbjct: 587 VSQCAPIMSQCAPIMSQCAPAVSQCAPMISQCAPILLQYAPAASQCAPIISQCAPAVSQC 646
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+P +Q +P +Q + +Q + +Q +P +Q +PA +Q +P +Q + A
Sbjct: 647 APIMSQCTPTVSQCAPMISQCAPTVSQCAPILSQYAPAASQCAPIMSQCAPA 698
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
+ +P +Q +PA +Q +P +Q +P +Q +PA +P + +P Q +PA +Q
Sbjct: 573 ISQCAPVISQCAPAVSQCAPIMSQCAPIMSQCAPAVSQCAPMISQCAPILLQYAPAASQC 632
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV--IL 172
+P +Q +PA +Q + +Q + +Q +P +Q +P +Q +P +Q + A +Q I+
Sbjct: 633 APIISQCAPAVSQCAPIMSQCTPTVSQCAPMISQCAPTVSQCAPILSQYAPAASQCAPIM 692
Query: 173 NKIRPG 178
++ P
Sbjct: 693 SQCAPA 698
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 3/135 (2%)
Query: 38 KRKDLEDYLSTDEDEATVYTVS---PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVS 94
+ +D YL + + +S P +Q +P +Q +PA +Q +P +Q +P +
Sbjct: 546 RSRDRNGYLMQETERQYAPAISHCVPVISQCAPVISQCAPAVSQCAPIMSQCAPIMSQCA 605
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
PA + +P +Q +P Q +PA +Q +P +Q + A +Q + +Q +P +Q +P +
Sbjct: 606 PAVSQCAPMISQCAPILLQYAPAASQCAPIISQCAPAVSQCAPIMSQCTPTVSQCAPMIS 665
Query: 155 QVSPAYTQVSSAYTQ 169
Q +P +Q + +Q
Sbjct: 666 QCAPTVSQCAPILSQ 680
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 60/109 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+P +Q +PA +Q +P +Q +P Q +PA +P + +PA +Q +P +Q +P
Sbjct: 597 CAPIMSQCAPAVSQCAPMISQCAPILLQYAPAASQCAPIISQCAPAVSQCAPIMSQCTPT 656
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+Q +P +Q + +Q + +Q +PA +Q +P +Q +PA + +A
Sbjct: 657 VSQCAPMISQCAPTVSQCAPILSQYAPAASQCAPIMSQCAPAISNFRNA 705
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
Length = 1853
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAY----------TQVSPAYIPVSPAYTPVSPAYTQVS 108
SP Y+ SP Y+ SP Y+ SP+Y + SP Y P SP+Y+P SP Y+ S
Sbjct: 1690 SPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTS 1749
Query: 109 PAYTQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P Y+ SP YT SP Y S A++ S Y+ SP Y+ SP+YT SP Y+ S Y
Sbjct: 1750 PQYSPSSPTYTPSSPTYNPTSPRAFS--SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTY 1807
Query: 168 T 168
T
Sbjct: 1808 T 1808
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ-----------------VSPAYTQVSPAY 118
Y+ SP Y+ SP Y P SP Y+P SP+Y SP+Y+ SP Y
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQY 1745
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPA------YTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S YT S Y SP Y+ SP Y+ SP+YT S Y+
Sbjct: 1746 SPTSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYS 1801
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y+ SP Y+ SP+YT SP Y+ SP Y P SPA P
Sbjct: 1776 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTP-SPADQP 1815
>gi|296472457|tpg|DAA14572.1| TPA: zinc finger protein 768 [Bos taurus]
Length = 520
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 42 SPGFGPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFEPQSPRY 101
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
SP Y S Y S Y SP Y +P + SP + SS + +++LN
Sbjct: 102 EPQSPGYEPKSPGYEPRSPGYGTQSPEYEPQNPEFKTQSPEFEAESSKFQEGAEMLLN 159
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 10/134 (7%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA-------YTQVSP 144
P SP + P SP + SP + SP + SP + S + S + SP
Sbjct: 40 PQSPGFGPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFEPQSP 99
Query: 145 AYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA---FFHEWVWMSWY 201
Y SP Y SP Y S Y E ++S +EA F E M
Sbjct: 100 RYEPQSPGYEPKSPGYEPRSPGYGTQSPEYEPQNPEFKTQSPEFEAESSKFQEGAEMLLN 159
Query: 202 PDINPTLPIAMGVH 215
P+ L I +GVH
Sbjct: 160 PEEKNPLSIPLGVH 173
>gi|297464629|ref|XP_002703337.1| PREDICTED: zinc finger protein 768 [Bos taurus]
Length = 520
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 42 SPGFGPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFEPQSPRY 101
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
SP Y S Y S Y SP Y +P + SP + SS + +++LN
Sbjct: 102 EPQSPGYEPKSPGYEPRSPGYGTQSPEYEPQNPEFKTQSPEFEAESSKFQEGAEMLLN 159
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 50/134 (37%), Gaps = 10/134 (7%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA-------YTQVSP 144
P SP + P SP + SP + SP + SP + S + S + SP
Sbjct: 40 PQSPGFGPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFEPQSP 99
Query: 145 AYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA---FFHEWVWMSWY 201
Y SP Y SP Y S Y E ++S +EA F E M
Sbjct: 100 RYEPQSPGYEPKSPGYEPRSPGYGTQSPEYEPQNPEFKTQSPEFEAESSKFQEGAEMLLN 159
Query: 202 PDINPTLPIAMGVH 215
P+ L I +GVH
Sbjct: 160 PEEKNPLSIPLGVH 173
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 9/96 (9%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA---------YTQVSPAYTQVSP 123
SP Y+ SP ++ SP Y P SPAYTP SP Y+ SPA ++ SPAY+ SP
Sbjct: 1658 SPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAIAGRGGAKSFSPTSPAYSPTSP 1717
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ S A++ S Y+ SP Y+ SP Y+ SPA
Sbjct: 1718 QYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSPA 1753
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA---------YTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SP Y+ SPAYT SP Y+ SPA ++ SPAY P SP Y+P SPA++ SP
Sbjct: 1672 SPNYSPASPAYTPTSPVYSPTSPAIAGRGGAKSFSPTSPAYSPTSPQYSPASPAFSPTSP 1731
Query: 110 AYTQVSPAYTQVSPAYT 126
Y+ SP Y+ SP Y+
Sbjct: 1732 QYSPASPQYSPTSPQYS 1748
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---------YIPVSPAYTPVSPAYTQVSP 109
SP ++ SP Y+ SPAYT SP Y+ SPA + P SPAY+P SP Y+ SP
Sbjct: 1665 SPKFSPTSPNYSPASPAYTPTSPVYSPTSPAIAGRGGAKSFSPTSPAYSPTSPQYSPASP 1724
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYT 133
A++ SP Y+ SP Y+ S Y+
Sbjct: 1725 AFSPTSPQYSPASPQYSPTSPQYS 1748
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 9/75 (12%)
Query: 59 SPAYTQVSPAYTQVSPA---------YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SPAYT SP Y+ SPA ++ SPAY+ SP Y P SPA++P SP Y+ SP
Sbjct: 1679 SPAYTPTSPVYSPTSPAIAGRGGAKSFSPTSPAYSPTSPQYSPASPAFSPTSPQYSPASP 1738
Query: 110 AYTQVSPAYTQVSPA 124
Y+ SP Y+ SPA
Sbjct: 1739 QYSPTSPQYSPTSPA 1753
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 13/96 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------YTPVSPAYTQVSP 109
SPA + SP SP Y+ SPAYT SP Y P SPA ++P SPAY+ SP
Sbjct: 1662 SPASPKFSP----TSPNYSPASPAYTPTSPVYSPTSPAIAGRGGAKSFSPTSPAYSPTSP 1717
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
Y+ SPA++ SP Y+ S Y+ S Y+ SPA
Sbjct: 1718 QYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSPA 1753
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 22/115 (19%)
Query: 76 YTQVSPAYTQ--------------------VSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y+ SPA SP Y P SP ++P SP Y+ SPAYT S
Sbjct: 1627 YSPSSPAGAGYSPTSPRMSPTSPVGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTS 1686
Query: 116 PAYTQVSPAYTQVSLA--YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P Y+ SPA A ++ S AY+ SP Y+ SPA++ SP Y+ S Y+
Sbjct: 1687 PVYSPTSPAIAGRGGAKSFSPTSPAYSPTSPQYSPASPAFSPTSPQYSPASPQYS 1741
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 65/180 (36%), Gaps = 72/180 (40%)
Query: 61 AYTQVSPAYTQVSPAYT--------------------QVSPAYTQVSPA----------- 89
++ VSP Y SP Y SPAY+ SP
Sbjct: 1555 GFSPVSPGYVPTSPGYATSPAGALGAMSPWTGNNGLGATSPAYSPTSPRIFGGATSPSYS 1614
Query: 90 ------------YIPVSPA---------------------------YTPVSPAYTQVSPA 110
Y P SPA Y+P SP ++ SP
Sbjct: 1615 PTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTSPVGRYGAATSPQYSPASPKFSPTSPN 1674
Query: 111 YTQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAYT SP Y+ S +A + +++ SPAY+ SP Y+ SPA++ S Y+
Sbjct: 1675 YSPASPAYTPTSPVYSPTSPAIAGRGGAKSFSPTSPAYSPTSPQYSPASPAFSPTSPQYS 1734
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQ-----------------VSPAYIPVSPAYTPVS 101
SP Y+ SP Y+ SP Y+ SP+Y SP+Y P SP Y+P S
Sbjct: 1691 SPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTS 1750
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P Y+ SP YT SP Y SP S Y+ S Y+ SP+YT SP Y+ SP YT
Sbjct: 1751 PQYSPSSPTYTPSSPTYNPTSP--RAFSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYT 1808
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 61 AYTQVSPAYTQVSP-AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
A + +PAY +SP AY+ SP ++ SP Y P SP+Y+P SPA Q
Sbjct: 1564 ALSPRTPAYGGMSPGAYSPTSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1610
>gi|443727933|gb|ELU14476.1| hypothetical protein CAPTEDRAFT_133987 [Capitella teleta]
Length = 131
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
+ V V+P +V P +++ PA +V P +++ PA V P + + PA +V P +
Sbjct: 7 SIVSKVNPDDPKVDPMVSKIDPADPKVDPIVSKIDPADPKVDPIVSKIDPADPKVDPIVS 66
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV---SPAYTQVSPAYTQVSSAYTQ 169
++ PA +V P +++ LA +V +++ PA +V P V P + S +
Sbjct: 67 KIDPADPKVDPIVSKIDLADPKVDPLVSKIDPADLKVDHMDPKVNPVDPPHVVDESKFVT 126
Query: 170 VIL 172
+I+
Sbjct: 127 LIV 129
>gi|395846454|ref|XP_003795919.1| PREDICTED: uncharacterized protein LOC100963640 [Otolemur garnettii]
Length = 2345
Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 61/161 (37%), Gaps = 25/161 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 1867 SPGFEPQSPEFEPQSPRFEPESPGFESQSPGLVPPSPEFAPRSPDSDSQSPEFESQSPRY 1926
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y SP Y SP + +P + SS +
Sbjct: 1927 EPQSP-------GYEPKSPGYEPRSPGYESQSPGFESQNPEFKTQSSEF----------- 1968
Query: 179 RESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAMGVHCHDS 219
A + F E M P+ +L I +GVH DS
Sbjct: 1969 -------EAQSSKFQEGAEMLLNPEEKNSLTIPLGVHPLDS 2002
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP Y+ SPAY+ SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SPAY
Sbjct: 1771 SPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAY 1830
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ S Y+ S YT SPA SPAY+ SP
Sbjct: 1831 SPSSPQYSPSSPQYSPSSPQYTPSSPA-GDASPAYSPTSP 1869
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SPAY+ SP Y P SPAY+P SP Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1759 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1818
Query: 128 VSLAYTQVS 136
S Y+ S
Sbjct: 1819 TSPTYSPTS 1827
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SPAY P SP Y+P SPAY+ SP Y+ SP+Y+ SP Y+ S Y+
Sbjct: 1759 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1818
Query: 135 VSLAYTQVSPA 145
S Y+ SPA
Sbjct: 1819 TSPTYSPTSPA 1829
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP Y P SPAY+P SP Y+ SPAY+ SP Y+ SP+Y+ S Y+ S Y+
Sbjct: 1759 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1818
Query: 142 VSPAYTQVSPA 152
SP Y+ SPA
Sbjct: 1819 TSPTYSPTSPA 1829
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
Y P SP Y+P SPAY+ SP Y+ SPAY+ SP Y+ S +Y+ S Y+ SP Y+
Sbjct: 1759 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1818
Query: 149 VSPAYTQVSPA 159
SP Y+ SPA
Sbjct: 1819 TSPTYSPTSPA 1829
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
Y+P SP Y+ SPAY+ SP Y+ SPAY+ S Y+ S +Y+ SP Y+ SP Y+
Sbjct: 1759 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1818
Query: 156 VSPAYTQVSSA 166
SP Y+ S A
Sbjct: 1819 TSPTYSPTSPA 1829
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 57/120 (47%), Gaps = 22/120 (18%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA--------------- 103
SPAY+ SP Y+ SP+Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1785 SPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAYSPSSPQYSPSSPQY 1844
Query: 104 ------YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
YT SPA SPAY+ SP Y+ S Y+ S Y+ SP Y+ SP S
Sbjct: 1845 SPSSPQYTPSSPA-GDASPAYSPTSPQYSPSSPRYSPSSPQYSPTSPQYSPSSPGGAGTS 1903
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ SPAY+ SP Y+ S AY+ S Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1759 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1818
Query: 163 VSSAYT 168
S Y+
Sbjct: 1819 TSPTYS 1824
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY--IPVSPAYTPVSPAYTQVSPAYTQ-VS 115
SP + SP+++ SPA+T SPAY+ SP Y P SP+Y+P SP Y+ SPAY S
Sbjct: 1591 SPGFGPTSPSFSPASPAFTPTSPAYSPTSPGYQASPTSPSYSPTSPNYSPTSPAYGSPTS 1650
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
P+Y+ SPA++ S + Y+ SP Y+ SP Y
Sbjct: 1651 PSYSPTSPAFSPTSPTSPTSPV-YSPTSPMYSPTSPMY 1687
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 10/107 (9%)
Query: 59 SPA--YTQVSPAYTQVSP--AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
SPA + SP SP Y+ SP + SP + P SP+++P SPA+T SPAY+
Sbjct: 1559 SPASPFGGTSPTSPGFSPTAGYSPTSPMFGATSPGFGPTSPSFSPASPAFTPTSPAYSPT 1618
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ-VSPAYTQVSPAY 160
SP Y Q SP S +Y+ S Y+ SPAY SP+Y+ SPA+
Sbjct: 1619 SPGY-QASP----TSPSYSPTSPNYSPTSPAYGSPTSPSYSPTSPAF 1660
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 52 EATVYTVSPAYTQ----VSPAYTQVSPAYTQVSPAYTQV---SPAYIPVSPA-YTPVSPA 103
+ T Y SP Y + + + +T P + SP Y SP Y+P SP
Sbjct: 1506 QDTGYLGSPDYGASFSPIRASGAETPGGFTDYQPGFGGAGGFSP-YGARSPGGYSPASP- 1563
Query: 104 YTQVSPAYTQVSP--AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SP SP Y+ SP + S + S +++ SPA+T SPAY+ SP Y
Sbjct: 1564 FGGTSPTSPGFSPTAGYSPTSPMFGATSPGFGPTSPSFSPASPAFTPTSPAYSPTSPGY 1622
>gi|402590450|gb|EJW84380.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 1251
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP Y+ SPAY+ SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SPAY
Sbjct: 1079 SPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAY 1138
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ S Y+ S YT SPA SPAY+ SP
Sbjct: 1139 SPSSPQYSPSSPQYSPSSPQYTPSSPA-GDASPAYSPTSP 1177
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SPAY+ SP Y P SPAY+P SP Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1067 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1126
Query: 128 VSLAYTQVS 136
S Y+ S
Sbjct: 1127 TSPTYSPTS 1135
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SPAY P SP Y+P SPAY+ SP Y+ SP+Y+ SP Y+ S Y+
Sbjct: 1067 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1126
Query: 135 VSLAYTQVSPA 145
S Y+ SPA
Sbjct: 1127 TSPTYSPTSPA 1137
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP Y P SPAY+P SP Y+ SPAY+ SP Y+ SP+Y+ S Y+ S Y+
Sbjct: 1067 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1126
Query: 142 VSPAYTQVSPA 152
SP Y+ SPA
Sbjct: 1127 TSPTYSPTSPA 1137
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
Y P SP Y+P SPAY+ SP Y+ SPAY+ SP Y+ S +Y+ S Y+ SP Y+
Sbjct: 1067 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1126
Query: 149 VSPAYTQVSPA 159
SP Y+ SPA
Sbjct: 1127 TSPTYSPTSPA 1137
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
Y+P SP Y+ SPAY+ SP Y+ SPAY+ S Y+ S +Y+ SP Y+ SP Y+
Sbjct: 1067 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1126
Query: 156 VSPAYTQVSSA 166
SP Y+ S A
Sbjct: 1127 TSPTYSPTSPA 1137
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 57/120 (47%), Gaps = 22/120 (18%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA--------------- 103
SPAY+ SP Y+ SP+Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1093 SPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAYSPSSPQYSPSSPQY 1152
Query: 104 ------YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
YT SPA SPAY+ SP Y+ S Y+ S Y+ SP Y+ SP S
Sbjct: 1153 SPSSPQYTPSSPA-GDASPAYSPTSPQYSPSSPRYSPSSPQYSPTSPQYSPSSPGGAGTS 1211
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ SPAY+ SP Y+ S AY+ S Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1067 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1126
Query: 163 VSSAYT 168
S Y+
Sbjct: 1127 TSPTYS 1132
>gi|226822892|gb|ACJ54150.1| RNA polymerase II [Plasmodium falciparum]
gi|226822894|gb|ACJ54151.1| RNA polymerase II [Plasmodium falciparum]
gi|226822896|gb|ACJ54152.1| RNA polymerase II [Plasmodium falciparum]
gi|226822898|gb|ACJ54153.1| RNA polymerase II [Plasmodium falciparum]
gi|226822900|gb|ACJ54154.1| RNA polymerase II [Plasmodium falciparum]
Length = 202
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 33 YNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPT 92
Query: 122 SPAYTQVSLAYTQVS----LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
SP Y+ S ++ Y+ SP ++ SPAY+ SP Y +
Sbjct: 93 SPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDK 137
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+SP Y+ SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP
Sbjct: 36 MSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 95
Query: 153 YTQVSPAYTQVSS 165
Y+ SP ++S
Sbjct: 96 YSPTSPVAQNIAS 108
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTP----VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
Y+ SP Y + Y P SP V+ Y +SP Y+ SP Y+ SP Y+ S
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYS 97
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica T-34]
Length = 1947
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA---------YTQVSPAYTQVSP 123
SP Y+ SP ++ SP Y P SPAYTP SP Y+ SPA ++ SPAY+ SP
Sbjct: 1820 SPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGVKGFSPASPAYSPTSP 1879
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y+ S A++ S Y+ SP Y+ SP Y+ SP
Sbjct: 1880 QYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSP 1914
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 59 SPAYTQVSPAYTQVSPA------YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
SPA SP ++SP SP Y+ SP + P SP Y+P SPAYT SP Y+
Sbjct: 1793 SPAGAGYSPTSPRMSPTSPMGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYS 1852
Query: 113 QVSPAYTQVS--PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPA ++ S AY+ S Y+ SPA++ SP Y+ SP Y+ S Y+
Sbjct: 1853 PTSPAMAGRGGVKGFSPASPAYSPTSPQYSPASPAFSPTSPQYSPASPQYSPTSPQYS 1910
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA---------YTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SP Y+ SPAYT SP Y+ SPA ++ SPAY P SP Y+P SPA++ SP
Sbjct: 1834 SPNYSPASPAYTPTSPVYSPTSPAMAGRGGVKGFSPASPAYSPTSPQYSPASPAFSPTSP 1893
Query: 110 AYTQVSPAYTQVSPAYTQVS 129
Y+ SP Y+ SP Y+ S
Sbjct: 1894 QYSPASPQYSPTSPQYSPTS 1913
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 59 SPAYTQVSPAYTQVSPA---------YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SPAYT SP Y+ SPA ++ SPAY+ SP Y P SPA++P SP Y+ SP
Sbjct: 1841 SPAYTPTSPVYSPTSPAMAGRGGVKGFSPASPAYSPTSPQYSPASPAFSPTSPQYSPASP 1900
Query: 110 AYTQVSPAYTQVSP 123
Y+ SP Y+ SP
Sbjct: 1901 QYSPTSPQYSPTSP 1914
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------YTPVSPAYTQVSP 109
SPA + SP SP Y+ SPAYT SP Y P SPA ++P SPAY+ SP
Sbjct: 1824 SPASPKFSP----TSPNYSPASPAYTPTSPVYSPTSPAMAGRGGVKGFSPASPAYSPTSP 1879
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
Y+ SPA++ SP Y+ S Y+ S Y+ SP
Sbjct: 1880 QYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSP 1914
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 45/158 (28%)
Query: 56 YTVSPAYTQVSPAYTQVSP---------------------------------AYTQVSPA 82
+T + SPAY+ SP Y+ SP
Sbjct: 1746 WTGNNGLGGTSPAYSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPTSPR 1805
Query: 83 YT----------QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS--L 130
+ SP Y P SP ++P SP Y+ SPAYT SP Y+ SPA
Sbjct: 1806 MSPTSPMGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGVK 1865
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
++ S AY+ SP Y+ SPA++ SP Y+ S Y+
Sbjct: 1866 GFSPASPAYSPTSPQYSPASPAFSPTSPQYSPASPQYS 1903
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 63/180 (35%), Gaps = 72/180 (40%)
Query: 61 AYTQVSPAYTQVSPAYT--------------------QVSPAYTQVSPA----------- 89
++ VSP Y SP Y SPAY+ SP
Sbjct: 1717 GFSPVSPGYMPTSPGYATSPAGALGGMSPWTGNNGLGGTSPAYSPTSPRIFGGATSPSYS 1776
Query: 90 ------------YIPVSPA---------------------------YTPVSPAYTQVSPA 110
Y P SPA Y+P SP ++ SP
Sbjct: 1777 PTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTSPMGRYGAATSPQYSPASPKFSPTSPN 1836
Query: 111 YTQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAYT SP Y+ S +A ++ SPAY+ SP Y+ SPA++ S Y+
Sbjct: 1837 YSPASPAYTPTSPVYSPTSPAMAGRGGVKGFSPASPAYSPTSPQYSPASPAFSPTSPQYS 1896
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 28/135 (20%)
Query: 57 TVSPAYTQVSPAYTQVSPAY-------------------TQVSPAYTQVSPAYIPVSPAY 97
+ SP Y+ SP + SP+ + +SPA SP Y P SP Y
Sbjct: 1579 SASPRYSPSSPQFVPTSPSLTPATPTYTPTSPMFISSPGSHLSPA----SPLYSPTSPGY 1634
Query: 98 TPVSPAYTQVSPAY--TQVSPA--YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
+P S + SP Y + SP+ Y+ SP+Y+ S ++ V+ + SP Y+ SPAY
Sbjct: 1635 SPTSHYQSTTSPLYPASGYSPSSHYSPTSPSYSPTSPRFS-VTSNFQGASPNYSPTSPAY 1693
Query: 154 TQVSPAYTQVSSAYT 168
+ SPAY S Y+
Sbjct: 1694 SPTSPAYVSSSPNYS 1708
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
A+ Y+ S Y+ SP+Y+ SP ++ V+ + SP Y P SPAY+P SPAY SP Y+
Sbjct: 1650 ASGYSPSSHYSPTSPSYSPTSPRFS-VTSNFQGASPNYSPTSPAYSPTSPAYVSSSPNYS 1708
Query: 113 QVSPAYTQVSPAYT 126
SP+ SPAY+
Sbjct: 1709 PTSPS----SPAYS 1718
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 51/110 (46%), Gaps = 28/110 (25%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAY--TQVSPA--YIPVSPAYTPVSPA----------- 103
SP Y+ SP Y+ S + SP Y + SP+ Y P SP+Y+P SP
Sbjct: 1624 SPLYSPTSPGYSPTSHYQSTTSPLYPASGYSPSSHYSPTSPSYSPTSPRFSVTSNFQGAS 1683
Query: 104 --YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
Y+ SPAY+ SPAY SP Y+ S + SPAY+ SP
Sbjct: 1684 PNYSPTSPAYSPTSPAYVSSSPNYSPTSPS-----------SPAYSPNSP 1722
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
++V+ + SP Y+ SPAY+ SPAY SP Y P SP+ SPAY+ SP
Sbjct: 1673 FSVTSNFQGASPNYSPTSPAYSPTSPAYVSSSPNYSPTSPS----SPAYSPNSP 1722
Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQV-SP 116
+P+ T SP Q +PAY ++ + +Q + P P+++P + + +SPAY+ SP
Sbjct: 1497 TPSLTPHSPWNAQGTPAYGSMAWSPSQYGSSMTPGGPSFSPSGASDASGLSPAYSSAFSP 1556
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
T SP +++ S SP Y+ SP + SP+
Sbjct: 1557 --TPGSPGSPGPAMSPYIPSSPAGSASPRYSPSSPQFVPTSPS 1597
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP+Y+ SP Y+ SP Y
Sbjct: 1680 SPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTSPRY 1739
Query: 119 TQVSPAYTQVS 129
+ SP Y+ S
Sbjct: 1740 SPTSPTYSPTS 1750
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 58/101 (57%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP+Y+P SP Y+ SP Y+ SP Y
Sbjct: 1687 SPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTSPRYSPTSPTY 1746
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SPAY+ S Y+ S Y+ SP YT SP SPA
Sbjct: 1747 SPTSPAYSPSSPQYSPSSPQYSPSSPQYTPSSPMGGDASPA 1787
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP+Y+ SP Y+ SP Y
Sbjct: 1680 SPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTSPRY 1739
Query: 126 TQVSLAYTQVS 136
+ S Y+ S
Sbjct: 1740 SPTSPTYSPTS 1750
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP+Y+ SP Y+ S Y
Sbjct: 1680 SPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTSPRY 1739
Query: 133 TQVSLAYTQVSPA 145
+ S Y+ SPA
Sbjct: 1740 SPTSPTYSPTSPA 1752
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP+Y+ S Y+ S Y
Sbjct: 1680 SPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTSPRY 1739
Query: 140 TQVSPAYTQVSPA 152
+ SP Y+ SPA
Sbjct: 1740 SPTSPTYSPTSPA 1752
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S +Y+ S Y+ SP Y
Sbjct: 1680 SPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTSPRY 1739
Query: 147 TQVSPAYTQVSPA 159
+ SP Y+ SPA
Sbjct: 1740 SPTSPTYSPTSPA 1752
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S +Y+ SP Y+ SP
Sbjct: 1679 ASPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTSPR 1738
Query: 153 YTQVSPAYTQVSSA 166
Y+ SP Y+ S A
Sbjct: 1739 YSPTSPTYSPTSPA 1752
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP+Y+ SP Y+ S
Sbjct: 1677 SPASPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSPASPGYSPTS 1736
Query: 158 PAYTQVSSAYT 168
P Y+ S Y+
Sbjct: 1737 PRYSPTSPTYS 1747
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 21/75 (28%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
SP Y+P SP Y+ SP Y+ SP Y+ SP Y SP SP Y
Sbjct: 1680 SPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTY-----------------SP----TSPTY 1718
Query: 154 TQVSPAYTQVSSAYT 168
+ SP+Y+ S Y+
Sbjct: 1719 SPTSPSYSPASPGYS 1733
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP---AYTPVSPAYTQVSPAYTQVSPAY 118
YT SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SPA
Sbjct: 1815 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA- 1873
Query: 119 TQVSP 123
+SP
Sbjct: 1874 --ISP 1876
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA +S
Sbjct: 1819 SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA---IS 1875
Query: 116 P 116
P
Sbjct: 1876 P 1876
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP---AYTQVSPAYTQVSPAYTQVSLAY 132
YT SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1815 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAI 1874
Query: 133 T 133
+
Sbjct: 1875 S 1875
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
YT SP Y P SP Y+P SP Y+ SP Y+ SP + SP
Sbjct: 1815 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSP------------------T 1856
Query: 143 SPAYTQVSPAYTQVSPAYT 161
SP Y+ SP Y+ SPA +
Sbjct: 1857 SPGYSPTSPTYSLTSPAIS 1875
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP---AYTQVSPAYTQVSPAYTQVSSAY 167
YT SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1815 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAI 1874
Query: 168 T 168
+
Sbjct: 1875 S 1875
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA--YTQVSPAYTQVSL 130
SP Y+ SP ++ SP Y P SPAYTP SP Y+ SPA A ++ SPAY+ S
Sbjct: 1657 SPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGAKGFSPTSPAYSPTSP 1716
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
Y+ S A++ SP Y+ SP Y+ SP Y+
Sbjct: 1717 QYSPASPAFSPTSPQYSPASPQYSPTSPQYS 1747
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA---------YTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SP Y+ SPAYT SP Y+ SPA ++ SPAY P SP Y+P SPA++ SP
Sbjct: 1671 SPNYSPASPAYTPTSPVYSPTSPAMAGRGGAKGFSPTSPAYSPTSPQYSPASPAFSPTSP 1730
Query: 110 AYTQVSPAYTQVSPAYT 126
Y+ SP Y+ SP Y+
Sbjct: 1731 QYSPASPQYSPTSPQYS 1747
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---------YIPVSPAYTPVSPAYTQVSP 109
SP ++ SP Y+ SPAYT SP Y+ SPA + P SPAY+P SP Y+ SP
Sbjct: 1664 SPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGAKGFSPTSPAYSPTSPQYSPASP 1723
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYT 133
A++ SP Y+ SP Y+ S Y+
Sbjct: 1724 AFSPTSPQYSPASPQYSPTSPQYS 1747
Score = 43.5 bits (101), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 64/180 (35%), Gaps = 72/180 (40%)
Query: 61 AYTQVSPAYTQVSPAYT--------------------QVSPAYTQVSPA----------- 89
++ VSP Y SP Y SPAY+ SP
Sbjct: 1554 GFSPVSPGYVPTSPGYATSPAGALGAMSPWTGNNGLGATSPAYSPTSPRIFGGATSPSYS 1613
Query: 90 ------------YIPVSPA---------------------------YTPVSPAYTQVSPA 110
Y P SPA Y+P SP ++ SP
Sbjct: 1614 PTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTSPVGRYGAATSPQYSPASPKFSPTSPN 1673
Query: 111 YTQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPAYT SP Y+ S +A + ++ SPAY+ SP Y+ SPA++ S Y+
Sbjct: 1674 YSPASPAYTPTSPVYSPTSPAMAGRGGAKGFSPTSPAYSPTSPQYSPASPAFSPTSPQYS 1733
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP---AYTPVSPAYTQVSPAYTQVSPAY 118
YT SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SPA
Sbjct: 1853 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA- 1911
Query: 119 TQVSP 123
+SP
Sbjct: 1912 --ISP 1914
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSP---AYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA +S
Sbjct: 1857 SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA---IS 1913
Query: 116 P 116
P
Sbjct: 1914 P 1914
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP---AYTQVSPAYTQVSPAYTQVSLAY 132
YT SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1853 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAI 1912
Query: 133 T 133
+
Sbjct: 1913 S 1913
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
YT SP Y P SP Y+P SP Y+ SP Y+ SP + SP
Sbjct: 1853 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSP------------------T 1894
Query: 143 SPAYTQVSPAYTQVSPAYT 161
SP Y+ SP Y+ SPA +
Sbjct: 1895 SPGYSPTSPTYSLTSPAIS 1913
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP---AYTQVSPAYTQVSPAYTQVSSAY 167
YT SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1853 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAI 1912
Query: 168 T 168
+
Sbjct: 1913 S 1913
>gi|212292959|gb|ACJ24351.1| RNA polymerase II [Plasmodium reichenowi]
Length = 198
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 33 YNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPT 92
Query: 122 SPAYTQVSLAYTQVS----LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
SP Y+ S ++ Y+ SP ++ SPAY+ SP Y +
Sbjct: 93 SPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDK 137
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+SP Y+ SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP
Sbjct: 36 MSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 95
Query: 153 YTQVSPAYTQVSS 165
Y+ SP ++S
Sbjct: 96 YSPTSPVAQNIAS 108
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 83 YTQVSPAYIPVSPAYTPVSPA-----------YTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
Y+ SP Y + Y+P SP Y +SP Y+ SP Y+ SP Y+ S
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYS 97
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP ++ SP++ P SPAY+P SPAY Q SP SP+Y+ SP ++ S Y+ S ++
Sbjct: 1602 SPGFSPASPSFAPTSPAYSPTSPAYGQASP----TSPSYSPTSPGFSPTSPNYSPTSPSF 1657
Query: 140 TQVSPAYTQVSPAYTQVSPA 159
+ SPA++ SP+Y+ SPA
Sbjct: 1658 SPTSPAFSPTSPSYSPTSPA 1677
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 28/128 (21%)
Query: 59 SPAYTQVSPAYTQVSP---AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPAY+ SPAY Q SP +Y+ SP ++ SP Y P SP+++P SPA++ SP+Y+ S
Sbjct: 1616 SPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPTSPAFSPTSPSYSPTS 1675
Query: 116 PA----------------YTQVSPAYTQVS-LAYTQVSLAYTQ--------VSPAYTQVS 150
PA YT SP ++ S Y+ S + SP Y+ S
Sbjct: 1676 PAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPGGPTSPGYSPTS 1735
Query: 151 PAYTQVSP 158
PA++ SP
Sbjct: 1736 PAFSPTSP 1743
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAY---TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
SP ++ SP++ SPAY P SPAY +P SP+Y+ SP ++ SP Y+ SP+++ S
Sbjct: 1602 SPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPTS 1661
Query: 130 LAYTQVSLAYTQVSPAYTQV---------SPAYTQVSPAYTQVS 164
A++ S +Y+ SPA SP YT SP ++ S
Sbjct: 1662 PAFSPTSPSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTS 1705
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA---------YTQVSPAYTQVSP 123
SP Y+ SP ++ SP Y P SPAYTP SP Y+ SPA ++ SPAY+ SP
Sbjct: 1648 SPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSP 1707
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y+ S A++ S Y+ SP Y+ SP Y+ SP
Sbjct: 1708 QYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSP 1742
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA---------YTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SP Y+ SPAYT SP Y+ SPA ++ SPAY P SP Y+P SPA++ SP
Sbjct: 1662 SPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPASPAFSPTSP 1721
Query: 110 AYTQVSPAYTQVSPAYT 126
Y+ SP Y+ SP Y+
Sbjct: 1722 QYSPASPQYSPTSPQYS 1738
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---------YIPVSPAYTPVSPAYTQVSP 109
SP ++ SP Y+ SPAYT SP Y+ SPA + P SPAY+P SP Y+ SP
Sbjct: 1655 SPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPASP 1714
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYT 133
A++ SP Y+ SP Y+ S Y+
Sbjct: 1715 AFSPTSPQYSPASPQYSPTSPQYS 1738
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 59 SPAYTQVSPAYTQVSPAY---TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPA SP+ SPA SP Y+ SP + P SP Y+P SPAYT SP Y+ S
Sbjct: 1628 SPAGAGYSPS----SPAGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTS 1683
Query: 116 PAYTQVS--PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
PA ++ S AY+ S Y+ SPA++ SP Y+ SP Y+ S Y+
Sbjct: 1684 PAMAGRGGGKGFSPTSPAYSPTSPQYSPASPAFSPTSPQYSPASPQYSPTSPQYS 1738
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 59 SPAYTQVSPAYTQVSPA---------YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SPAYT SP Y+ SPA ++ SPAY+ SP Y P SPA++P SP Y+ SP
Sbjct: 1669 SPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPASPAFSPTSPQYSPASP 1728
Query: 110 AYTQVSPAYTQVSP 123
Y+ SP Y+ SP
Sbjct: 1729 QYSPTSPQYSPTSP 1742
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------YTPVSPAYTQVSP 109
SPA + SP SP Y+ SPAYT SP Y P SPA ++P SPAY+ SP
Sbjct: 1652 SPASPKFSP----TSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSP 1707
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
Y+ SPA++ SP Y+ S Y+ S Y+ SP
Sbjct: 1708 QYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSP 1742
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 63/171 (36%), Gaps = 63/171 (36%)
Query: 61 AYTQVSPAYTQVSPAYT------------------QVSPAYTQVSP-------------- 88
++ VSP Y SP Y SPAY+ SP
Sbjct: 1554 GFSPVSPGYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIFGGATSPSYSPT 1613
Query: 89 -------------------AYIPVSPA----------YTPVSPAYTQVSPAYTQVSPAYT 119
Y P SPA Y+P SP ++ SP Y+ SPAYT
Sbjct: 1614 SPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFSPTSPNYSPASPAYT 1673
Query: 120 QVSPAYTQVS--LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S +A ++ SPAY+ SP Y+ SPA++ S Y+
Sbjct: 1674 PTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPASPAFSPTSPQYS 1724
>gi|443727344|gb|ELU14147.1| hypothetical protein CAPTEDRAFT_121281, partial [Capitella teleta]
Length = 275
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+S Y + Y Q+S Y + Y Q+S Y + Y + Y + Y Q+ P
Sbjct: 22 ISSQYNTIDSRYGQISSQYNTIDSRYGQISSQYNTIDSRYGQIRSQYNTIDSRYGQIKPQ 81
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y + Y Q+ Y + Y Q+ P Y Y Q+ P Y + S Q+
Sbjct: 82 YNTIDSRYGQIRSQYNTIDSRYGQIRPQYNTKDSRYGQIRPQYNTIDSRCGQI 134
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y Q+ P Y + Y Q+S Y + Y +S Y + Y Q+S Y + Y Q
Sbjct: 4 KYGQIRPQYNTIYSKYGQISSQYNTIDSRYGQISSQYNTIDSRYGQISSQYNTIDSRYGQ 63
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSA 187
+ Y + Y Q+ P Y + Y Q+ Y + S Y Q IRP + N++ S
Sbjct: 64 IRSQYNTIDSRYGQIKPQYNTIDSRYGQIRSQYNTIDSRYGQ-----IRP--QYNTKDSR 116
Query: 188 Y 188
Y
Sbjct: 117 Y 117
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P Y + Y Q+S Y + Y Q+S Y + Y +S Y + Y Q+
Sbjct: 8 IRPQYNTIYSKYGQISSQYNTIDSRYGQISSQYNTIDSRYGQISSQYNTIDSRYGQIRSQ 67
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y + Y Q+ Y + Y Q+ Y + Y Q+ P Y S Y Q+
Sbjct: 68 YNTIDSRYGQIKPQYNTIDSRYGQIRSQYNTIDSRYGQIRPQYNTKDSRYGQI 120
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ Y + Y Q+ Y V Y Q+ P Y V Y + Y ++ Y Q+
Sbjct: 159 IRSQYNTIDSRYGQIRLRYNTVDSRYGQIRPQYNTVDSRYGQIRSQYNTINSRYGQIRLQ 218
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y V Y Q+ Y Y ++ P Y + Y Q+ P Y + S Y Q+
Sbjct: 219 YNTVDSRYGQIRSQYDTTDSRYGKIKPQYNTIDSRYGQIKPQYNTIDSRYGQI 271
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 11/125 (8%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T+ Y Q+S Y + Y Q+S Y + Y + Y + Y Q+ P Y +
Sbjct: 28 TIDSRYGQISSQYNTIDSRYGQISSQYNTIDSRYGQIRSQYNTIDSRYGQIKPQYNTIDS 87
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT-------QVSPAYT----QVSS 165
Y Q+ Y + Y Q+ Y Y Q+ P Y Q+ P YT Q+SS
Sbjct: 88 RYGQIRSQYNTIDSRYGQIRPQYNTKDSRYGQIRPQYNTIDSRCGQIKPQYTFRYDQISS 147
Query: 166 AYTQV 170
Y +
Sbjct: 148 QYNTI 152
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 32/81 (39%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV Y Q+ Y ++ Y Q+ Y V Y + Y Y ++ P Y +
Sbjct: 193 TVDSRYGQIRSQYNTINSRYGQIRLQYNTVDSRYGQIRSQYDTTDSRYGKIKPQYNTIDS 252
Query: 117 AYTQVSPAYTQVSLAYTQVSL 137
Y Q+ P Y + Y Q+ +
Sbjct: 253 RYGQIKPQYNTIDSRYGQIRV 273
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%)
Query: 45 YLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY 104
+L T + + SPAY+ SPAY+ SPAY+ SP+Y+ SP+Y P SP ++P SPAY
Sbjct: 1645 HLLTLQRHQLILLTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPRFSPTSPAY 1704
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ SP+Y+ SPAY+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ +SP +++
Sbjct: 1705 SPTSPSYSPTSPAYSPTSPRYSPTSPRYSPTSPRYSPTSPTYSPSSPNYSPISPRHSK 1762
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 68/181 (37%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA------------------- 96
Y+ + ++ SP +SP+++ SP + +SPAY P SPA
Sbjct: 1560 YSPASVFSPTSPQIAGMSPSFSPTSPMCSPISPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1619
Query: 97 --YTPVSPAYT--------------------------QVSPAYTQVSPAYTQVSPA---- 124
++P SPAY+ SPAY+ SPAY+ SPA
Sbjct: 1620 PRFSPTSPAYSPTSPIRHHQSIHRLHLLTLQRHQLILLTSPAYSPTSPAYSPTSPAYSPT 1679
Query: 125 -----------------YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
++ S AY+ S +Y+ SPAY+ SP Y+ SP Y+ S Y
Sbjct: 1680 SPSYSPTSPSYSPTSPRFSPTSPAYSPTSPSYSPTSPAYSPTSPRYSPTSPRYSPTSPRY 1739
Query: 168 T 168
+
Sbjct: 1740 S 1740
Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 15/94 (15%)
Query: 80 SPAYTQVSP--AYIPVSPAYTP-------------VSPAYTQVSPAYTQVSPAYTQVSPA 124
SP Y SP PVSP+Y+P +SP+++ SP + +SPAY+ SPA
Sbjct: 1541 SPGYHPFSPFSGTSPVSPSYSPASVFSPTSPQIAGMSPSFSPTSPMCSPISPAYSPTSPA 1600
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y+ S +Y+ S +Y+ SP ++ SPAY+ SP
Sbjct: 1601 YSPTSPSYSPTSPSYSPTSPRFSPTSPAYSPTSP 1634
>gi|440494147|gb|ELQ76552.1| RNA polymerase II, large subunit, partial [Trachipleistophora
hominis]
Length = 1748
Score = 63.9 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 29/120 (24%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQV--------SPAYTQVSPAYIPV-------SPAYTPVSP 102
+SPA + SP YT SP Y+++ SPAYT SP Y+P+ S Y+P SP
Sbjct: 1620 LSPA-ARYSPRYTPASPTYSRISSPSYSPTSPAYTPTSPKYVPMNAKYVLGSSRYSPTSP 1678
Query: 103 AYTQVSPAYTQVSPA-----YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ--VSPAYTQ 155
+Y+ SP Y A YT+ SP+Y+ S+ Y Y+ S Y + VSP Y Q
Sbjct: 1679 SYSPASPRYNPGRSAGSPQYYTRASPSYSPTSVRY------YSPTSTRYVKGGVSPLYGQ 1732
Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 100 VSPAYTQVSPAYTQVSPAYTQV--------SPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
+SPA + SP YT SP Y+++ SPAYT S Y ++ Y S Y+ SP
Sbjct: 1620 LSPA-ARYSPRYTPASPTYSRISSPSYSPTSPAYTPTSPKYVPMNAKYVLGSSRYSPTSP 1678
Query: 152 AYTQVSPAYTQVSSAYTQVILNKIRPGRESNS 183
+Y+ SP Y SA + + P S
Sbjct: 1679 SYSPASPRYNPGRSAGSPQYYTRASPSYSPTS 1710
>gi|213556954|gb|ACJ53768.1| RNA polymerase II, partial [Plasmodium fragile]
Length = 210
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
VSP Y+ SP Y+ SP Y+ SP Y+P SP Y+P SP Y+ SP Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPQYMPTSPKYSPTSPKYSPTSPKYSPTSPQYSPTSPI 111
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
S + Y SP ++ SPAY+ SP Y + ++A +
Sbjct: 112 PNNPSSPHYS---PYAIASPKFSPTSPAYSISSPVYDRSANARNK 153
>gi|410227396|gb|JAA10917.1| zinc finger protein 768 [Pan troglodytes]
gi|410249006|gb|JAA12470.1| zinc finger protein 768 [Pan troglodytes]
gi|410295884|gb|JAA26542.1| zinc finger protein 768 [Pan troglodytes]
gi|410333603|gb|JAA35748.1| zinc finger protein 768 [Pan troglodytes]
Length = 547
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 62/160 (38%), Gaps = 24/160 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y SP Y SP Y SP Y SS Y
Sbjct: 122 EPQSP--------------GYEPRSPGYEPRSPGYEPRSPGYESESSRYESQNT------ 161
Query: 179 RESNSRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVH 215
E ++S +EA F E M P+ L I++GVH
Sbjct: 162 -ELKTQSPEFEAQSSKFQEGAEMLLNPEEKSPLNISVGVH 200
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 35/135 (25%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP-- 116
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP+Y+P SP Y+ SP Y+ SP
Sbjct: 1554 SPQYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPGYSPTSPSY 1613
Query: 117 ---------------------------------AYTQVSPAYTQVSLAYTQVSLAYTQVS 143
AY+ SP+Y+ S AY+ S +Y+ S
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPAYSPTSPSYSPTS 1673
Query: 144 PAYTQVSPAYTQVSP 158
PAY+ SP+Y+ SP
Sbjct: 1674 PAYSPTSPSYSPTSP 1688
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 63/100 (63%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
AY+ SP+Y+ SPAY+ SP+Y P SPAY+P SP+Y+ SP Y+ SP+Y+ SP+Y+
Sbjct: 1647 AYSPTSPSYSPTSPAYSPTSPSYSPTSPAYSPTSPSYSPTSPKYSPTSPSYSPTSPSYSP 1706
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
S Y+ S Y+ SP Y+ SP Y+ SP Y S AY
Sbjct: 1707 TSPKYSPTSPQYSPTSPQYSPTSPQYSPTSPQYAATSPAY 1746
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 69/173 (39%), Gaps = 63/173 (36%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP---------------- 102
SP Y+ SP Y+ SP Y+ SP Y+ SP+Y P SP Y+P SP
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPGYSPTSPSYSPTSPSY 1620
Query: 103 --------------------------AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
AY+ SP+Y+ SPAY+ SP+Y+ S AY+ S
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPAYSPTSPSYSPTSPAYSPTS 1680
Query: 137 LAYTQVSP---------------------AYTQVSPAYTQVSPAYTQVSSAYT 168
+Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 1681 PSYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSPQYSPTSPQYSPTSPQYS 1733
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 63/152 (41%), Gaps = 46/152 (30%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA+ + A + P Q SP P Y P SP Y+P SP Y+ SP Y+ SP+Y
Sbjct: 1537 SPAFMGGAGAQSPFVPKSPQYSPTS----PGYSPTSPGYSPTSPGYSPTSPGYSPTSPSY 1592
Query: 119 TQVSPAYTQVS------------------------------------------LAYTQVS 136
+ SP Y+ S AY+ S
Sbjct: 1593 SPTSPGYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1652
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+Y+ SPAY+ SP+Y+ SPAY+ S +Y+
Sbjct: 1653 PSYSPTSPAYSPTSPSYSPTSPAYSPTSPSYS 1684
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
++ ++ V + SPA+ + A ++P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 1522 MNGGFSPVPIGASAASPAFMGGAGAQSPFVPKSPQYSPTSPGYSPTSPGYSPTSPGYSPT 1581
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA 145
SP Y+ S +Y+ S Y+ SP
Sbjct: 1582 SPGYSPTSPSYSPTSPGYSPTSPG 1605
>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
Length = 1875
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQ-VSPAYTQV 114
VSP ++ SPAY+ SP + SP + SP Y+ P SP Y+P SP Y SP+Y+
Sbjct: 1705 VSPGFSPTSPAYSPTSPGIS--SPQFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1762
Query: 115 SPA-YTQVSPAYTQVSLAYTQVSLAYTQV-SPAYTQVSPAYTQVSPAYTQVSSAY 167
SPA Y+ SP Y+ S Y+ S ++ SPAY+ SP Y+ SP Y+ S Y
Sbjct: 1763 SPAGYSPTSPQYSPSSPNYSPTSPSFGGATSPAYSPTSPQYSPTSPQYSPTSPQY 1817
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 59 SPAYTQVSPAYTQ-VSPAYTQVSPA-YTQVSPAYIPVSPAYTPVSPAYTQV-SPAYTQVS 115
SP Y+ SP Y SP+Y+ SPA Y+ SP Y P SP Y+P SP++ SPAY+ S
Sbjct: 1741 SPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPSSPNYSPTSPSFGGATSPAYSPTS 1800
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
P Y+ SP Y+ S Y + SP SP Y+ SP Y+ S A
Sbjct: 1801 PQYSPTSPQYSPTSPQYQASGDRRSPTSP----TSPQYSPTSPRYSPTSPA 1847
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 59 SPA-YTQVSPAYTQVSPAYTQVSPAYTQV-SPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
SPA Y+ SP Y+ SP Y+ SP++ SPAY P SP Y+P SP Y+ SP Y
Sbjct: 1763 SPAGYSPTSPQYSPSSPNYSPTSPSFGGATSPAYSPTSPQYSPTSPQYSPTSPQYQASGD 1822
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPA--YTQVSPAYTQVSPA 159
+ SP Q Y+ S Y+ SPA ++ SP Y+ SP
Sbjct: 1823 RRSPTSPTSPQ----YSPTSPRYSPTSPAGQFSPTSPRYSPTSPG 1863
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 80 SPAYTQVSPAYIPVSPAYT---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY--TQ 134
SP SP + +SP ++ PVSP ++ SPAY+ SP + SP + S Y +
Sbjct: 1682 SPYSGGRSPGFATMSPGFSGTSPVSPGFSPTSPAYSPTSPGIS--SPQFAATSPGYMASP 1739
Query: 135 VSLAYTQVSPAYTQ-VSPAYTQVSPA 159
S Y+ SP Y SP+Y+ SPA
Sbjct: 1740 TSPHYSPTSPRYGSPTSPSYSPTSPA 1765
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA-------------YIPVSPAYTPVSPAYT 105
SP Y+ SP Y+ SP Y+ SP+Y Y P SP+Y+P SP Y+
Sbjct: 1693 SPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYS 1752
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP YT SP Y S ++ S Y+ SP Y+ SP+YT SP Y+ S
Sbjct: 1753 PTSPQYSPSSPTYTPSSPTYNPTSPRGFS--SPQYSPTSPTYSPTSPSYTPSSPQYSPTS 1810
Query: 165 SAYT 168
YT
Sbjct: 1811 PTYT 1814
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA------YTPVSPAYTQVSPAYT 112
SP+Y+ SP Y+ SP Y+ SP YT SP Y P SP Y+P SP Y+ SP+YT
Sbjct: 1741 SPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYT 1800
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP Y+ SP YT S Y+ SP Y+ SP
Sbjct: 1801 PSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP 1839
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 61 AYTQVSPAYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
A + +P+Y +SP Y+ SP ++ SP Y P SP+Y+P SPA Q
Sbjct: 1566 ALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1612
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SPAY+ SP Y+ SPAY P SP Y+P SP+Y+ SP Y+ SP Y+
Sbjct: 1686 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1745
Query: 121 VSPAYTQVS 129
SP Y+ S
Sbjct: 1746 TSPTYSPTS 1754
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP Y+ SPAY+ SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SPAY
Sbjct: 1698 SPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAY 1757
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ S Y+ S YT SP SPAY+ SP
Sbjct: 1758 SPSSPQYSPSSPQYSPSSPQYTPSSPV-GDASPAYSPTSP 1796
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SPAY+ SP Y P SPAY+P SP Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1686 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1745
Query: 128 VSLAYTQVS 136
S Y+ S
Sbjct: 1746 TSPTYSPTS 1754
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SPAY P SP Y+P SPAY+ SP Y+ SP+Y+ SP Y+ S Y+
Sbjct: 1686 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1745
Query: 135 VSLAYTQVSPA 145
S Y+ SPA
Sbjct: 1746 TSPTYSPTSPA 1756
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP Y P SPAY+P SP Y+ SPAY+ SP Y+ SP+Y+ S Y+ S Y+
Sbjct: 1686 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1745
Query: 142 VSPAYTQVSPA 152
SP Y+ SPA
Sbjct: 1746 TSPTYSPTSPA 1756
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
Y P SP Y+P SPAY+ SP Y+ SPAY+ SP Y+ S +Y+ S Y+ SP Y+
Sbjct: 1686 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1745
Query: 149 VSPAYTQVSPA 159
SP Y+ SPA
Sbjct: 1746 TSPTYSPTSPA 1756
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 34/140 (24%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SP Y+ SPAY+ SP Y P SP+Y+P SP Y+ SP Y+ SP Y
Sbjct: 1691 SPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTY 1750
Query: 119 TQVSPAYTQV--------------------SLAYTQVSLAYTQVSPA------------- 145
+ SPAY+ S S AY+ SP
Sbjct: 1751 SPTSPAYSPSSPQYSPSSPQYSPSSPQYTPSSPVGDASPAYSPTSPQYSPSSPRYSPSSP 1810
Query: 146 -YTQVSPAYTQVSPAYTQVS 164
Y+ SP Y+ SP S
Sbjct: 1811 QYSPTSPQYSPSSPGGAGTS 1830
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
Y+P SP Y+ SPAY+ SP Y+ SPAY+ S Y+ S +Y+ SP Y+ SP Y+
Sbjct: 1686 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1745
Query: 156 VSPAYTQVSSA 166
SP Y+ S A
Sbjct: 1746 TSPTYSPTSPA 1756
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ SPAY+ SP Y+ S AY+ S Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1686 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1745
Query: 163 VSSAYT 168
S Y+
Sbjct: 1746 TSPTYS 1751
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP Y+ SPAY+ SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SPAY
Sbjct: 1703 SPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAY 1762
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ S Y+ S YT SP SPAY+ SP
Sbjct: 1763 SPSSPQYSPSSPQYSPSSPQYTPSSPV-GDASPAYSPTSP 1801
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SPAY+ SP Y+ SPAY P SP Y+P SP+Y+ SP Y+ SP Y+
Sbjct: 1691 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1750
Query: 121 VSPAYTQVS 129
SP Y+ S
Sbjct: 1751 TSPTYSPTS 1759
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 42/69 (60%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SPAY+ SP Y P SPAY+P SP Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1691 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1750
Query: 128 VSLAYTQVS 136
S Y+ S
Sbjct: 1751 TSPTYSPTS 1759
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SPAY P SP Y+P SPAY+ SP Y+ SP+Y+ SP Y+ S Y+
Sbjct: 1691 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1750
Query: 135 VSLAYTQVSPA 145
S Y+ SPA
Sbjct: 1751 TSPTYSPTSPA 1761
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP Y P SPAY+P SP Y+ SPAY+ SP Y+ SP+Y+ S Y+ S Y+
Sbjct: 1691 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1750
Query: 142 VSPAYTQVSPA 152
SP Y+ SPA
Sbjct: 1751 TSPTYSPTSPA 1761
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
Y P SP Y+P SPAY+ SP Y+ SPAY+ SP Y+ S +Y+ S Y+ SP Y+
Sbjct: 1691 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1750
Query: 149 VSPAYTQVSPA 159
SP Y+ SPA
Sbjct: 1751 TSPTYSPTSPA 1761
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 34/140 (24%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SP Y+ SPAY+ SP Y P SP+Y+P SP Y+ SP Y+ SP Y
Sbjct: 1696 SPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSPTSPTY 1755
Query: 119 TQVSPAYTQV--------------------SLAYTQVSLAYTQVSPA------------- 145
+ SPAY+ S S AY+ SP
Sbjct: 1756 SPTSPAYSPSSPQYSPSSPQYSPSSPQYTPSSPVGDASPAYSPTSPQYSPSSPRYSPSSP 1815
Query: 146 -YTQVSPAYTQVSPAYTQVS 164
Y+ SP Y+ SP S
Sbjct: 1816 QYSPTSPQYSPSSPGGAGTS 1835
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
Y+P SP Y+ SPAY+ SP Y+ SPAY+ S Y+ S +Y+ SP Y+ SP Y+
Sbjct: 1691 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1750
Query: 156 VSPAYTQVSSA 166
SP Y+ S A
Sbjct: 1751 TSPTYSPTSPA 1761
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ SPAY+ SP Y+ S AY+ S Y+ SP+Y+ SP Y+ SP Y+
Sbjct: 1691 GYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYSP 1750
Query: 163 VSSAYT 168
S Y+
Sbjct: 1751 TSPTYS 1756
>gi|410050232|ref|XP_003315108.2| PREDICTED: zinc finger protein 768-like [Pan troglodytes]
Length = 547
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 62/160 (38%), Gaps = 24/160 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y SP Y SP Y SP Y SS Y
Sbjct: 122 EPQSP--------------GYEPRSPGYEPRSPGYEPRSPGYESESSRYESQNT------ 161
Query: 179 RESNSRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVH 215
E ++S +EA F E M P+ L I++GVH
Sbjct: 162 -ELKTQSPEFEAQSSKFQEGAEMLLNPEEKSPLNISVGVH 200
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA-------------YIPVSPAYTPVSPAYT 105
SP Y+ SP Y+ SP Y+ SP+Y Y P SP+Y+P SP Y+
Sbjct: 1690 SPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYS 1749
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP YT SP Y S ++ S Y+ SP Y+ SP+YT SP Y+ S
Sbjct: 1750 PTSPQYSPSSPTYTPSSPTYNPTSPRGFS--SPQYSPTSPTYSPTSPSYTPSSPQYSPTS 1807
Query: 165 SAYT 168
YT
Sbjct: 1808 PTYT 1811
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA------YTPVSPAYTQVSPAYT 112
SP+Y+ SP Y+ SP Y+ SP YT SP Y P SP Y+P SP Y+ SP+YT
Sbjct: 1738 SPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYT 1797
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP Y+ SP YT S Y+ SP Y+ SP
Sbjct: 1798 PSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP 1836
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 61 AYTQVSPAYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
A + +P+Y +SP Y+ SP ++ SP Y P SP+Y+P SPA Q
Sbjct: 1563 ALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1609
>gi|123243231|ref|XP_001288415.1| dynein heavy chain [Trichomonas vaginalis G3]
gi|121857587|gb|EAX75485.1| dynein heavy chain, putative [Trichomonas vaginalis G3]
Length = 152
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
++ + V P + +V P + P + ++ P +V P I V P Y + P + +V
Sbjct: 14 NKVIPLFFKVLPLFNKVLPLFIMQLPLFIKMLPLLIKVLPLLIKVLPHYIKMLPLFFKVL 73
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P + +V P + P Y + +V + +V P + +V P + P + +V +
Sbjct: 74 PLFNKVLPLFIMQLPHYIMQLPLFNKVIPLFFKVLPLFNKVLPLFIMQLPLFFKVLPLFN 133
Query: 169 QVI 171
+V+
Sbjct: 134 KVL 136
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P Y P + +V P + +V P + +V P +I P + + P +V P +V P Y
Sbjct: 4 PHYIMQLPLFNKVIPLFFKVLPLFNKVLPLFIMQLPLFIKMLPLLIKVLPLLIKVLPHYI 63
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
++ P + +V + +V + P Y P + +V P + +V + +V+
Sbjct: 64 KMLPLFFKVLPLFNKVLPLFIMQLPHYIMQLPLFNKVIPLFFKVLPLFNKVL 115
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P + ++ P +V P +V P Y ++ P + V P + V P + P Y P +
Sbjct: 39 PLFIKMLPLLIKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIMQLPHYIMQLPLFN 98
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+V P + +V + +V + P + +V P + +V P + Y
Sbjct: 99 KVIPLFFKVLPLFNKVLPLFIMQLPLFFKVLPLFNKVLPLFIMQLPHYIM 148
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V P +V P Y ++ P + +V P + +V P +I P Y P + +V P + +V P
Sbjct: 51 VLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIMQLPHYIMQLPLFNKVIPLFFKVLPL 110
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ +V P + Q+ L + +V P + +V P + P Y
Sbjct: 111 FNKVLPLFI------MQLPLFF-KVLPLFNKVLPLFIMQLPHYIM 148
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1602 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1661
Query: 119 TQVSPAY-TQVS----------------LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Q+S Y+ S Y+ SPAY+ SPAY+ SP ++
Sbjct: 1662 SPASPRSPAQMSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAYSPTSPQWS 1721
Query: 162 QVSSA 166
S A
Sbjct: 1722 PSSPA 1726
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
VY+ + Y SP SP T SP Y + A P SP Y+P SPA SP
Sbjct: 1562 NVYSPTSPYVPQSPFGGATSPFGTSPYATSPFYDR---ARGPTSPTYSPTSPALNLTSPG 1618
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP
Sbjct: 1619 YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASP 1666
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 27/122 (22%)
Query: 65 VSPAYTQVSPAYTQVSP-AYTQVSPAYIPVSP---------------------AYTPVSP 102
+SPA P Y+ SP Y+ SP Y+P SP A P SP
Sbjct: 1549 MSPA----GPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPFYDRARGPTSP 1603
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SPA SP Y+ SP Y+ S +++ S Y+ SP+++ SP Y+ SP+++
Sbjct: 1604 TYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSP 1663
Query: 163 VS 164
S
Sbjct: 1664 AS 1665
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTPVSPAYTQVSPAYTQ---VSP 116
Y Q +SPA P Y+ SP Y P SP Y P SP SP T SP
Sbjct: 1538 GYGQSPVGAGGMSPA----GPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSP 1592
Query: 117 AYTQV----SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y + SP Y+ S A S Y+ SP Y+ SP+++ SP Y+ S +++
Sbjct: 1593 FYDRARGPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFS 1648
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1599 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1658
Query: 119 TQVSPAY-TQVS----------------LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Q+S Y+ S Y+ SPAY+ SPAY+ SP ++
Sbjct: 1659 SPASPRSPAQMSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAYSPTSPQWS 1718
Query: 162 QVSSA 166
S A
Sbjct: 1719 PSSPA 1723
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
VY+ + Y SP SP T SP Y + A P SP Y+P SPA SP
Sbjct: 1559 NVYSPTSPYVPQSPFGGATSPFGTSPYATSPFYDR---ARGPTSPTYSPTSPALNLTSPG 1615
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP
Sbjct: 1616 YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASP 1663
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 27/122 (22%)
Query: 65 VSPAYTQVSPAYTQVSP-AYTQVSPAYIPVSP---------------------AYTPVSP 102
+SPA P Y+ SP Y+ SP Y+P SP A P SP
Sbjct: 1546 MSPA----GPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPFYDRARGPTSP 1600
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SPA SP Y+ SP Y+ S +++ S Y+ SP+++ SP Y+ SP+++
Sbjct: 1601 TYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSP 1660
Query: 163 VS 164
S
Sbjct: 1661 AS 1662
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTPVSPAYTQVSPAYTQ---VSP 116
Y Q +SPA P Y+ SP Y P SP Y P SP SP T SP
Sbjct: 1535 GYGQSPVGAGGMSPA----GPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSP 1589
Query: 117 AYTQV----SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y + SP Y+ S A S Y+ SP Y+ SP+++ SP Y+ S +++
Sbjct: 1590 FYDRARGPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFS 1645
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ-VSP 116
VSP ++ SP Y+ SP SP Y SP + PVSPA+TP SPAY+ SP++ SP
Sbjct: 1571 VSPGFSPTSPGYSPTSPMMNVSSPGYNVASPRFSPVSPAFTPTSPAYSPTSPSFVSPTSP 1630
Query: 117 AYTQVSPAYTQVS 129
+Y+ SP Y+ S
Sbjct: 1631 SYSPTSPNYSPTS 1643
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPA--YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
AT Y+ + ++ SP YT SP Y+ SP T PVSP ++P SP Y+ SP
Sbjct: 1536 ATAYSDANGFSNQSP-YTARSPGGGYSPTSPFSTS------PVSPGFSPTSPGYSPTSPM 1588
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ-VSPAYTQVSPAYTQVS 164
SP Y SP ++ VS A+T S AY+ SP++ SP+Y+ SP Y+ S
Sbjct: 1589 MNVSSPGYNVASPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTS 1643
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 37/143 (25%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI-PVSPAYTPVSPAYTQVSPA------- 110
SP Y SP ++ VSPA+T SPAY+ SP+++ P SP+Y+P SP Y+ SP
Sbjct: 1593 SPGYNVASPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNLHVSPSS 1652
Query: 111 ----------------YTQVSPAYTQV-----------SPAYTQVSLAYTQVSLAYTQV- 142
Y+ SP ++ SP Y+ S ++ S A V
Sbjct: 1653 PSYSPTSPSYSPTSPNYSPTSPNFSGTKTSPGSGLSPTSPVYSPSSPNWSPTSPAQGGVA 1712
Query: 143 -SPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP+Y+ SP ++ S
Sbjct: 1713 TSPKYSPTSPSYSPTSPQFSPTS 1735
>gi|321471807|gb|EFX82779.1| hypothetical protein DAPPUDRAFT_210528 [Daphnia pulex]
Length = 352
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 7/148 (4%)
Query: 1 MFTPDF-LGLIGGTLTVEIFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVS 59
+F P + +G I + + +L V S+ R ++D L + A Y+ S
Sbjct: 60 LFGPPYEVGYIRSPIPSKHVYEDYLQF-VRSWSAA---SRDAVDDQLRANPAAAKDYS-S 114
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
YT +PAY + +PAY + +PAY + +PAY +PAY +PAY + + AY + +PAYT
Sbjct: 115 VKYTDSAPAYKESAPAYKEPAPAYKEPAPAYKEPAPAYKEPAPAYKEPASAYKESTPAYT 174
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYT 147
+ PAY + + +Y + + AY + + AY
Sbjct: 175 EA-PAYKESTQSYKESAPAYKETAQAYK 201
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 16/121 (13%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PAY + PAY + PAY + PAY + +PAY PAY +PAY + S AY + +PAY
Sbjct: 234 PAYKE--PAYKE--PAYKE--PAYKEPAPAYK--EPAYKEPAPAYAESSSAYKESAPAYK 285
Query: 120 QVSPAYTQVSLAYTQVSLA-YTQVSPAYTQVSPAYTQVSPAYTQ-VSSAYTQVILNKIRP 177
+ +PAY + Y Q + A YT+ +PAY + PAY + P Y Q +AYT+ + P
Sbjct: 286 ESAPAYKEPE--YKQPAQASYTEAAPAYKE--PAYKE--PEYKQPAKAAYTEAAPSYKEP 339
Query: 178 G 178
Sbjct: 340 A 340
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 22/106 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PAY + S AY + +PAY + +PAY + P Y P +YT+ +PAY + PAY
Sbjct: 267 APAYAESSSAYKESAPAYKESAPAYKE--PEYK------QPAQASYTEAAPAYKE--PAY 316
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ P Y Q + A AYT+ +P+Y + PAY + PAY + S
Sbjct: 317 KE--PEYKQPAKA------AYTEAAPSYKE--PAYKE--PAYKEES 350
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 53 ATVYTVSPAYTQVSPAYTQV----SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
++ ++ P SP + SPA +SP Y+ SPAY P SP+ TP SP Y+ S
Sbjct: 1565 SSAWSPQPGSPSASPGPSMSPYIPSPA-GALSPNYSPSSPAYAPASPSLTPSSPNYSPTS 1623
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P+ SP+Y+ SP Y SP+Y+ SP ++ SP Y+
Sbjct: 1624 PS-CLTSPSYSPTSPIYP---------------ASPSYSPTSPGFSVASPGYS 1660
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 19/112 (16%)
Query: 65 VSPAYTQV---SPAYTQVSPAYTQVSPAYIP-----VSPAYTPVSPAYTQVSPAYTQVSP 116
+SP Y+ P SP +SP YIP +SP Y+P SPAY SP+ T SP
Sbjct: 1560 LSPNYSSAWSPQPGSPSASPG-PSMSP-YIPSPAGALSPNYSPSSPAYAPASPSLTPSSP 1617
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP+ S +Y+ SP Y SP+Y+ SP ++ S Y+
Sbjct: 1618 NYSPTSPS--------CLTSPSYSPTSPIYP-ASPSYSPTSPGFSVASPGYS 1660
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 59 SPAYTQVSPAY---TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY-TQV 114
SP Y+ SPA+ + SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y + V
Sbjct: 1670 SPNYSPTSPAHQPGSATSPKYSPTSPQYSPTSPQYSPTSPQYSPTSPTYSPTSPKYGSGV 1729
Query: 115 SPAYTQ-VSPAYTQVSLAYTQVSLA---YTQVSPAYTQVSPAYTQVSPAYT 161
P+ T SP Y+ S Y+ S A Y+ SP ++ +P Y+ SP Y+
Sbjct: 1730 GPSGTSPTSPNYSPTSPVYSPTSPAVNGYSPTSPGHSGNNPKYSPTSPQYS 1780
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 32/143 (22%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAY---------------------------TQVSP 88
+ SP ++ SPAYT SP Y+ SP Y + SP
Sbjct: 1612 HVTSPRFSPASPAYTPTSPTYSPTSPVYHGGNKVSPTSPSYSPTSPSYSPTSPNYSPTSP 1671
Query: 89 AYIPVSPAYTP---VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY-TQVSP 144
Y P SPA+ P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y + V P
Sbjct: 1672 NYSPTSPAHQPGSATSPKYSPTSPQYSPTSPQYSPTSPQYSPTSPTYSPTSPKYGSGVGP 1731
Query: 145 AYTQ-VSPAYTQVSPAYTQVSSA 166
+ T SP Y+ SP Y+ S A
Sbjct: 1732 SGTSPTSPNYSPTSPVYSPTSPA 1754
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 32/139 (23%)
Query: 61 AYTQVSPA-YTQVSPAYTQV-SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA-------- 110
Y+ SPA Y+ SP + SP Y SP + P SPAYTP SP Y+ SP
Sbjct: 1587 GYSPTSPAGYSPTSPGFDGATSPVYHVTSPRFSPASPAYTPTSPTYSPTSPVYHGGNKVS 1646
Query: 111 -------------------YTQVSPAYTQVSPAY---TQVSLAYTQVSLAYTQVSPAYTQ 148
Y+ SP Y+ SPA+ + S Y+ S Y+ SP Y+
Sbjct: 1647 PTSPSYSPTSPSYSPTSPNYSPTSPNYSPTSPAHQPGSATSPKYSPTSPQYSPTSPQYSP 1706
Query: 149 VSPAYTQVSPAYTQVSSAY 167
SP Y+ SP Y+ S Y
Sbjct: 1707 TSPQYSPTSPTYSPTSPKY 1725
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 59 SPAYTQVSPAYTQVSPAYTQ---------VSPAYTQVSPAYIPVSPA---YTPVSPAYTQ 106
SP Y+ SP Y+ SP Y SP Y+ SP Y P SPA Y+P SP ++
Sbjct: 1708 SPQYSPTSPTYSPTSPKYGSGVGPSGTSPTSPNYSPTSPVYSPTSPAVNGYSPTSPGHSG 1767
Query: 107 VSPAYTQVSPAYTQVSPAYTQV 128
+P Y+ SP Y SP Y +
Sbjct: 1768 NNPKYSPTSPQY---SPTYVAI 1786
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSP-----AYTQVSPA-YTQVSPAYTQV-SLAYTQVSLAY 139
SP +SP Y P SP + +SP Y+ SPA Y+ SP + S Y S +
Sbjct: 1559 SPYSGGMSPGYAPTSPFSSGMSPTSPGYGYSPTSPAGYSPTSPGFDGATSPVYHVTSPRF 1618
Query: 140 TQVSPAYTQVSPAYTQVSPAY 160
+ SPAYT SP Y+ SP Y
Sbjct: 1619 SPASPAYTPTSPTYSPTSPVY 1639
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ SP ++ SP + SPAY+ SP Y Q P SP+Y+P SP ++ SP Y+ S
Sbjct: 1605 FMSSPGFSPASPVFAPTSPAYSPTSPGYQQS-----PTSPSYSPTSPGFSPTSPNYSPTS 1659
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQ-----------VSPAYTQVSPAYTQVSP 158
P+++ SPA++ S +Y+ S A SP YT SP ++ SP
Sbjct: 1660 PSFSPASPAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1713
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 17/113 (15%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ--VSPAYTQ 113
Y+ S Y+ SP + SP + SP ++ SP + P SPAY+P SP Y Q SP+Y+
Sbjct: 1585 YSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSP 1643
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP ++ SP Y+ S P+++ SPA++ SP+Y+ S A
Sbjct: 1644 TSPGFSPTSPNYSPTS--------------PSFSPASPAFSPTSPSYSPTSPA 1682
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ-----------V 107
SP+Y+ SP ++ SP Y+ SP+++ SPA+ P SP+Y+P SPA
Sbjct: 1638 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPALGGSTGRHLSPTSPT 1697
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
SP YT SP ++ SP + + T + + + SP SP Y+ SP ++
Sbjct: 1698 SPKYTPTSPGWSPTSPE----TYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFS 1746
>gi|340717264|ref|XP_003397105.1| PREDICTED: protein LMBR1L-like [Bombus terrestris]
Length = 524
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 44/73 (60%)
Query: 18 IFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYT 77
IF L+FL+L V SY LI KF+RKD EDY S DEDEATVY +S V+ A + +
Sbjct: 21 IFFLLFLVLYVSSYALIAKFRRKDREDYFSVDEDEATVYKISLWLCTVALAVSVGATLLL 80
Query: 78 QVSPAYTQVSPAY 90
VS A +V Y
Sbjct: 81 PVSIASNEVLILY 93
>gi|344258558|gb|EGW14662.1| Zinc finger protein 768 [Cricetulus griseus]
Length = 561
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 62/161 (38%), Gaps = 12/161 (7%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP + P SP P SP + SP Y SP Y
Sbjct: 62 SPGFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFVSQSPRYGPQSPGY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT-QVSSAYTQVILNKIRP 177
SP Y S + S Y P + SP Y SP Q S Q
Sbjct: 122 DPKSPGYEPGSPRFEPKSPGYGSKIPEFESQSPGYESQSPEDAPQNSGDEAQNP------ 175
Query: 178 GRESNSRSSAYE---AFFHEWVWMSWYPDINPTLPIAMGVH 215
E + S +E + F E M P+ L I +GVH
Sbjct: 176 --EFKTHSPEFETQSSKFQEGAEMLVNPEEKNPLSIPLGVH 214
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP + SP + SP + SP + SP + S S + SP Y SP
Sbjct: 60 PQSPGFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFVSQSPRYGPQSP 119
Query: 152 AYTQVSPAY 160
Y SP Y
Sbjct: 120 GYDPKSPGY 128
>gi|213556946|gb|ACJ53764.1| RNA polymerase II, partial [Plasmodium vivax]
Length = 211
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
VSP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPV 111
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
S + Y SP ++ SPAY+ SP Y Q +A ++
Sbjct: 112 PNNPSSPHYS---PYAIASPKFSPTSPAYSISSPVYDQSGNARSK 153
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP- 151
VSP Y+ SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPV 111
Query: 152 ----------AYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHEWVWMSWY 201
Y SP ++ S AY+ I + + + N+RS + ++ S
Sbjct: 112 PNNPSSPHYSPYAIASPKFSPTSPAYS--ISSPVY-DQSGNARSKSQHPLSPAYILQS-- 166
Query: 202 PDINPTLPIAMGVHCHD 218
P+ + H D
Sbjct: 167 -------PVQVKQHIQD 176
>gi|358418951|ref|XP_003584087.1| PREDICTED: zinc finger protein 768-like [Bos taurus]
gi|359079746|ref|XP_003587877.1| PREDICTED: zinc finger protein 768-like [Bos taurus]
Length = 542
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 62 SPGFGPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFEPQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPA--YTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
SP Y S Y S Y SP Y +P + SP + SS + +++LN
Sbjct: 122 EPQSPGYEPKSPGYEPRSPGYEPKSPGPEYEPQNPEFKTQSPEFEAESSKFQEGAEMLLN 181
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 49/141 (34%), Gaps = 22/141 (15%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP + P SP + SP + SP + SP + S + S SP + SP
Sbjct: 60 PQSPGFGPQSPEFEPQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDSQSPDFEPQSP 119
Query: 152 AYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYE-----------------AFFHE 194
Y SP Y S Y PG E S YE + F E
Sbjct: 120 RYEPQSPGYEPKSPGYEPRS-----PGYEPKSPGPEYEPQNPEFKTQSPEFEAESSKFQE 174
Query: 195 WVWMSWYPDINPTLPIAMGVH 215
M P+ L I +GVH
Sbjct: 175 GAEMLLNPEEKNPLSIPLGVH 195
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
SP Y+ SP Y+ SP Y+ SPAY+ SP Y P SPAY+P SP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPG 1467
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
SP Y+ SP Y+ SP Y+ SPAY P SP Y+P SPAY+ SP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPG 1467
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SP Y+ SP Y P SPAY+P SP Y+ SPAY+ SP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPG 1467
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
SP Y+ SP Y P SP Y+P SPAY+ SP Y+ SPAY+ SP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPG 1467
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
SP Y P SP Y+P SP Y+ SPAY+ SP Y+ SPAY+ S
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTS 1465
Score = 53.5 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 85 QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
+++P+ I SP Y+P SP Y+ SP Y+ SPAY+ SP Y+ S AY+ S
Sbjct: 1415 RMTPSRI-ASPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTS 1465
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
SP Y+ SP Y+ SP Y+ SPAY+ S Y+ S AY+ SP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPG 1467
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+ SP Y+ SP Y+ S AY+ S Y+ SPAY+ SP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPG 1467
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP Y+ SP Y+ S Y+ S AY+ SP Y+ SPAY+ SP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPG 1467
Score = 45.1 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ S Y+ S Y+ SPAY+ SP Y+ SPAY+ S
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTS 1465
Score = 40.8 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
S Y+ S Y+ SP Y+ SPAY+ SP Y+ S AY+
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYS 1462
>gi|426381878|ref|XP_004057558.1| PREDICTED: zinc finger protein 768 [Gorilla gorilla gorilla]
Length = 547
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 61/160 (38%), Gaps = 24/160 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP SP +P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGVESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y SP Y SP Y SP Y SS Y
Sbjct: 122 EPQSP--------------GYEPRSPGYEPRSPGYEPRSPGYESESSRYESQNT------ 161
Query: 179 RESNSRSSAYEA---FFHEWVWMSWYPDINPTLPIAMGVH 215
E ++S +EA F E M P+ L I++GVH
Sbjct: 162 -ELKTQSPEFEAQSSKFQEGAEMLLNPEEKSPLNISVGVH 200
>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
Length = 1738
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQ-VSPAYTQV 114
VSP ++ SP Y+ SP SP + SP Y+ P SP Y+P SP Y SP+Y+
Sbjct: 1573 VSPGFSPTSPGYSPTSPGT--ASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1630
Query: 115 SPA-YTQVSPAYTQVSLAYTQVSLAYTQ--VSPAYTQVSPAYTQVSPAYTQVSSAY 167
SPA Y+ SP Y+ S Y+ S + SPAY+ SP Y+ SP Y+ S Y
Sbjct: 1631 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQY 1686
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 59 SPAYTQVSPAYTQ-VSPAYTQVSPA-YTQVSPAYIPVSPAYTPVSPAYTQ--VSPAYTQV 114
SP Y+ SP Y SP+Y+ SPA Y+ SP Y P SP Y+P SP + SPAY+
Sbjct: 1609 SPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPT 1668
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPA 159
SP Y+ SP Y+ S Y S + SP Y+ SP Y+ SPA
Sbjct: 1669 SPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQYSPTSPRYSPTSPA 1716
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 59 SPAYTQVSPA-YTQVSPAYTQVSPAYTQVSPAYIP--VSPAYTPVSPAYTQVSPAYTQVS 115
SP+Y+ SPA Y+ SP Y+ SP Y+ SP ++ SPAY+P SP Y+ SP Y+ S
Sbjct: 1624 SPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTS 1683
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA--YTQVSPAYTQVS 164
P Y S + S Q Y+ SP Y+ SPA ++ SP Y+ S
Sbjct: 1684 PQYQATSDRRSPTSPTSPQ----YSPTSPRYSPTSPAGSFSPTSPRYSPTS 1730
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 59 SPA-YTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPA Y+ SP Y+ SP Y+ SP + SPAY P SP Y+P SP Y+ SP Y S
Sbjct: 1631 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATS 1690
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPA--YTQVSPAYTQVSPA 159
+ SP Q Y+ S Y+ SPA ++ SP Y+ SP
Sbjct: 1691 DRRSPTSPTSPQ----YSPTSPRYSPTSPAGSFSPTSPRYSPTSPG 1732
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 59 SPAYTQVSPAYTQ--VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
SP Y+ SP + SPAY+ SP Y+ SP Y P SP Y S + SP SP
Sbjct: 1646 SPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSP----TSP 1701
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
Y+ SP Y+ S A + ++ SP Y+ SP PAY+
Sbjct: 1702 QYSPTSPRYSPTSPAGS-----FSPTSPRYSPTSPG-----PAYS 1736
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 82 AYTQVSPAYI-PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY--TQVSLAYTQVSLA 138
+T +SP + PVSP ++P SP Y+ SP SP + SP Y + S Y+ S
Sbjct: 1561 GFTGMSPGFTSPVSPGFSPTSPGYSPTSPGT--ASPRFAATSPGYMASPTSPHYSPTSPR 1618
Query: 139 YTQ-VSPAYTQVSPA-YTQVSPAYTQVSSAYT 168
Y SP+Y+ SPA Y+ SP Y+ S Y+
Sbjct: 1619 YGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYS 1650
>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1742
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQ-VSPAYTQV 114
VSP ++ SP Y+ SP SP + SP Y+ P SP Y+P SP Y SP+Y+
Sbjct: 1573 VSPGFSPTSPGYSPTSPGT--ASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1630
Query: 115 SPA-YTQVSPAYTQVSLAYTQVSLAYTQ--VSPAYTQVSPAYTQVSPAYTQVSSAY 167
SPA Y+ SP Y+ S Y+ S + SPAY+ SP Y+ SP Y+ S Y
Sbjct: 1631 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQY 1686
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 59 SPAYTQVSPAYTQ-VSPAYTQVSPA-YTQVSPAYIPVSPAYTPVSPAYTQ--VSPAYTQV 114
SP Y+ SP Y SP+Y+ SPA Y+ SP Y P SP Y+P SP + SPAY+
Sbjct: 1609 SPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPT 1668
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPA 159
SP Y+ SP Y+ S Y S + SP Y+ SP Y+ SPA
Sbjct: 1669 SPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQYSPTSPRYSPTSPA 1716
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Query: 59 SPAYTQVSPA-YTQVSPAYTQVSPAYTQVSPAYIP--VSPAYTPVSPAYTQVSPAYTQVS 115
SP+Y+ SPA Y+ SP Y+ SP Y+ SP ++ SPAY+P SP Y+ SP Y+ S
Sbjct: 1624 SPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTS 1683
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA--YTQVSPAYTQVS 164
P Y S + S Q Y+ SP Y+ SPA ++ SP Y+ S
Sbjct: 1684 PQYQATSDRRSPTSPTSPQ----YSPTSPRYSPTSPAGSFSPTSPRYSPTS 1730
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 59 SPA-YTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPA Y+ SP Y+ SP Y+ SP + SPAY P SP Y+P SP Y+ SP Y S
Sbjct: 1631 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATS 1690
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPA--YTQVSPAYTQVSPA 159
+ SP Q Y+ S Y+ SPA ++ SP Y+ SP
Sbjct: 1691 DRRSPTSPTSPQ----YSPTSPRYSPTSPAGSFSPTSPRYSPTSPG 1732
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 59 SPAYTQVSPAYTQVSPAYTQ--VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
SP Y+ SP Y+ SP + SPAY+ SP Y P SP Y+P SP Y S + SP
Sbjct: 1639 SPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSP 1698
Query: 117 AYTQVSPAYTQVSLAYTQVSLA--YTQVSPAYTQVS--PAYTQVSP 158
SP Y+ S Y+ S A ++ SP Y+ S PAY+ SP
Sbjct: 1699 ----TSPQYSPTSPRYSPTSPAGSFSPTSPRYSPTSPGPAYSPTSP 1740
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 82 AYTQVSPAYI-PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY--TQVSLAYTQVSLA 138
+T +SP + PVSP ++P SP Y+ SP SP + SP Y + S Y+ S
Sbjct: 1561 GFTGMSPGFTSPVSPGFSPTSPGYSPTSPGT--ASPRFAATSPGYMASPTSPHYSPTSPR 1618
Query: 139 YTQ-VSPAYTQVSPA-YTQVSPAYTQVSSAYT 168
Y SP+Y+ SPA Y+ SP Y+ S Y+
Sbjct: 1619 YGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYS 1650
>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus ND90Pr]
Length = 1737
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQ-VSPAYTQV 114
VSP ++ SP Y+ SP SP + SP Y+ P SP Y+P SP Y SP+Y+
Sbjct: 1568 VSPGFSPTSPGYSPTSPGI--ASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1625
Query: 115 SPA-YTQVSPAYTQVSLAYTQVSLAYTQ--VSPAYTQVSPAYTQVSPAYTQVSSAY 167
SPA Y+ SP Y+ S Y+ S + SPAY+ SP Y+ SP Y+ S Y
Sbjct: 1626 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQY 1681
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 59 SPAYTQVSPAY--TQVSPAYTQVSPAYTQ-VSPAYIPVSPA-YTPVSPAYTQVSPAYTQV 114
SP + SP Y + SP Y+ SP Y SP+Y P SPA Y+P SP Y+ SP Y+
Sbjct: 1588 SPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPT 1647
Query: 115 SPAYTQ--VSPAYTQVSLAYTQVSLAYTQVSPAY----------TQVSPAYTQVSPAYTQ 162
SP + SPAY+ S Y+ S Y+ SP Y + SP Y+ SP Y+
Sbjct: 1648 SPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQAGSDRRSPTSPTSPQYSPTSPRYSP 1707
Query: 163 VSSA 166
S A
Sbjct: 1708 TSPA 1711
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 59 SPA-YTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPA Y+ SP Y+ SP Y+ SP + SPAY P SP Y+P SP Y+ SP Y S
Sbjct: 1626 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQAGS 1685
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSP--AYTQVSPAYTQVSPA 159
+ SP Q Y+ S Y+ SP A++ SP Y+ SP
Sbjct: 1686 DRRSPTSPTSPQ----YSPTSPRYSPTSPAGAFSPTSPRYSPTSPG 1727
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 72 VSPAYTQVSPA--YTQVSPAYI-PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY--T 126
+SP SP +T +SP + PVSP ++P SP Y+ SP SP + SP Y +
Sbjct: 1544 LSPFDGGRSPGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGI--ASPRFAATSPGYMAS 1601
Query: 127 QVSLAYTQVSLAYTQ-VSPAYTQVSPA-YTQVSPAYTQVSSAYT 168
S Y+ S Y SP+Y+ SPA Y+ SP Y+ S Y+
Sbjct: 1602 PTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYS 1645
>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus heterostrophus
C5]
Length = 1737
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQ-VSPAYTQV 114
VSP ++ SP Y+ SP SP + SP Y+ P SP Y+P SP Y SP+Y+
Sbjct: 1568 VSPGFSPTSPGYSPTSPGI--ASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPT 1625
Query: 115 SPA-YTQVSPAYTQVSLAYTQVSLAYTQ--VSPAYTQVSPAYTQVSPAYTQVSSAY 167
SPA Y+ SP Y+ S Y+ S + SPAY+ SP Y+ SP Y+ S Y
Sbjct: 1626 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQY 1681
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 59 SPAYTQVSPAY--TQVSPAYTQVSPAYTQ-VSPAYIPVSPA-YTPVSPAYTQVSPAYTQV 114
SP + SP Y + SP Y+ SP Y SP+Y P SPA Y+P SP Y+ SP Y+
Sbjct: 1588 SPRFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPT 1647
Query: 115 SPAYTQ--VSPAYTQVSLAYTQVSLAYTQVSPAY----------TQVSPAYTQVSPAYTQ 162
SP + SPAY+ S Y+ S Y+ SP Y + SP Y+ SP Y+
Sbjct: 1648 SPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQAGSDRRSPTSPTSPQYSPTSPRYSP 1707
Query: 163 VSSA 166
S A
Sbjct: 1708 TSPA 1711
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 59 SPA-YTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SPA Y+ SP Y+ SP Y+ SP + SPAY P SP Y+P SP Y+ SP Y S
Sbjct: 1626 SPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQYQAGS 1685
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSP--AYTQVSPAYTQVSPA 159
+ SP Q Y+ S Y+ SP A++ SP Y+ SP
Sbjct: 1686 DRRSPTSPTSPQ----YSPTSPRYSPTSPAGAFSPTSPRYSPTSPG 1727
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 72 VSPAYTQVSPA--YTQVSPAYI-PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY--T 126
+SP SP +T +SP + PVSP ++P SP Y+ SP SP + SP Y +
Sbjct: 1544 LSPFDGGRSPGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGI--ASPRFAATSPGYMAS 1601
Query: 127 QVSLAYTQVSLAYTQ-VSPAYTQVSPA-YTQVSPAYTQVSSAYT 168
S Y+ S Y SP+Y+ SPA Y+ SP Y+ S Y+
Sbjct: 1602 PTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYS 1645
>gi|350407234|ref|XP_003488027.1| PREDICTED: protein LMBR1L-like [Bombus impatiens]
Length = 524
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%)
Query: 18 IFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYT 77
IF L+FL+L V SY LI KF+R+D EDY S DEDEATVY +S V+ A + +
Sbjct: 21 IFFLLFLVLYVSSYALIAKFRRRDREDYFSVDEDEATVYKISLWLCTVALAVSVGATLLL 80
Query: 78 QVSPAYTQVSPAY 90
VS A +V Y
Sbjct: 81 PVSIASNEVLILY 93
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 33/57 (57%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
Y+ SP Y+ S Y P SP YTP SP+Y+ SP Y+ P Y+ SP Y+ S AY
Sbjct: 1846 YSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1902
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
Y+ SP Y P S Y+P SP YT SP+Y+ SP Y+ P Y+ S Y+ S AY
Sbjct: 1846 YSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1902
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
Y P SP Y+P S Y+ SP YT SP+Y+ SP Y+ Y+ S Y+ SPAY
Sbjct: 1846 YSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1902
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
Y+P SP Y+ S Y+ SP YT SP+Y+ S Y+ Y+ SP Y+ SPAY
Sbjct: 1846 YSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1902
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 43/110 (39%)
Query: 59 SPAYTQV-------------------------------------------SPAYTQVSPA 75
SP YT SP Y+ SP
Sbjct: 1793 SPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPSSPTYSPTSPQ 1852
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
Y+ S Y+ SP Y P SP+Y+P SP Y+ P Y+ SP Y+ SPAY
Sbjct: 1853 YSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1902
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Y+ SP Y+ S Y+ S YT S +Y+ SP Y+ P Y+ SP Y+ S AY
Sbjct: 1846 YSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1902
Score = 44.3 bits (103), Expect = 0.032, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ S Y+ S YT SP+Y+ SP Y+ P Y+ S Y+
Sbjct: 1846 YSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYS 1896
Score = 43.5 bits (101), Expect = 0.066, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1583 SPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYSP 1623
>gi|226822890|gb|ACJ54149.1| RNA polymerase II [Plasmodium falciparum]
gi|226822902|gb|ACJ54155.1| RNA polymerase II [Plasmodium falciparum]
Length = 195
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 33 YNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPT 92
Query: 122 SP-AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
SP A S Y+ S+ SP ++ SPAY+ SP Y +
Sbjct: 93 SPVAQNIASPNYSPYSI----TSPKFSPTSPAYSISSPVYDK 130
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 76 YTQVSPAYTQVSPAYIPVSPA-----------YTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
Y+ SP Y + Y P SP Y +SP Y+ SP Y+ SP Y+ SP
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
Y+ S Y+ S Y+ SP Y+ SP Y+ SP ++S
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIAS 101
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQ----VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
Y+ SP Y + Y+P SP V+ Y +SP Y+ SP Y+ S Y+ S
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 139 YTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYS 90
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP SPAY+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1595 SPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1654
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSP 144
+ SP Y+ S + S Y+ SP
Sbjct: 1655 SPASPRYSPTSPRMSPSSPKYSPTSP 1680
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP Y+ SP SPAY+ SP Y P SP+++P SP Y+ SP+++ SP Y+ SP++
Sbjct: 1595 SPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1654
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSP 151
+ S Y+ S + SP Y+ SP
Sbjct: 1655 SPASPRYSPTSPRMSPSSPKYSPTSP 1680
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP Y+ SP SPAY P SP Y+P SP+++ SP Y+ SP+++ SP Y+ S ++
Sbjct: 1595 SPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1654
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ S Y+ SP + SP Y+ SP
Sbjct: 1655 SPASPRYSPTSPRMSPSSPKYSPTSP 1680
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 33/150 (22%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTP------ 99
S DEA+ ++ P + Q +SP P Y+ SP AY P SP++ P
Sbjct: 1518 SNGGDEASSFSFMP-FGQSPLGAGGMSPG----GPGYSPSSPNAYSPTSPSFVPQSPYGG 1572
Query: 100 ---------------------VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
SP Y+ SP SPAY+ SP Y+ S +++ S
Sbjct: 1573 ATSPFGTSPYATSPFIHRAGMTSPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPR 1632
Query: 139 YTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP+++ SP Y+ SP+++ S Y+
Sbjct: 1633 YSPQSPSFSPTSPRYSPTSPSFSPASPRYS 1662
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 40/151 (26%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1454 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1513
Query: 119 TQVSPAY--TQVSLAYTQVSL--------------------------------------A 138
+ SP Y + + YT + L A
Sbjct: 1514 SPASPRYSPSMYFVFYTVIILMVPYNLYQFLQHMSPSSPKYSPTSPASPSSPKYSPTSPA 1573
Query: 139 YTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Y+ SPAY+ SPAY+ SP ++ S A Q
Sbjct: 1574 YSPASPAYSPASPAYSPTSPQWSPSSPAQQQ 1604
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
VY+ + Y SP SP T SP Y + P SP Y+P SPA SP
Sbjct: 1414 NVYSPTSPYVPPSPFGGATSPFGTSPYATSPFYDRTRG---PTSPTYSPTSPALNLTSPG 1470
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP Y+
Sbjct: 1471 YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYS 1521
>gi|418543018|ref|ZP_13108405.1| type VI secretion system, partial [Burkholderia pseudomallei 1258a]
gi|385353962|gb|EIF60266.1| type VI secretion system, partial [Burkholderia pseudomallei 1258a]
Length = 101
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V + VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 1 VSTSFTGVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 60
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVSPAYTQVSP 151
T +S ++T VS++ T VSL+YT S + T S
Sbjct: 61 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTSNSMTGTST 101
>gi|401403174|ref|XP_003881429.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325115841|emb|CBZ51396.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 882
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/129 (32%), Positives = 47/129 (36%), Gaps = 2/129 (1%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
++ + V P T V PA T T V P T V P P TPV P T V P
Sbjct: 708 KSGITPVKPGLTPVKPALTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVL 767
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
T T V P T V T T V P T V P T T V T V
Sbjct: 768 TPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVK 827
Query: 172 --LNKIRPG 178
L ++PG
Sbjct: 828 PGLTPVKPG 836
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 41/112 (36%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
++ + V P T V P T T V P T V P P TPV P T V P
Sbjct: 729 KSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVL 788
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
T T V P T V T T V P T V P T V P T V
Sbjct: 789 TPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPGLTPVKPGLTPV 840
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 49/131 (37%), Gaps = 5/131 (3%)
Query: 53 ATVYTVSPA---YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
AT ++PA T V P T V PA T T V P PV P TP T V P
Sbjct: 699 ATKPVLTPAKSGITPVKPGLTPVKPALTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKP 758
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
T V P T T V T V T T V P T V P T S T
Sbjct: 759 GLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITP 818
Query: 170 VI--LNKIRPG 178
V L ++PG
Sbjct: 819 VKPGLTPVKPG 829
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 36/102 (35%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V P T T V P T V P T PV P TPV P T T V P
Sbjct: 742 VKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPG 801
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
T V P T T V T V P T V P T V P
Sbjct: 802 LTPVKPVLTPAKSGITPVKPGLTPVKPGLTPVKPGLTPVKPG 843
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 39/115 (33%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T V P T V P T T V P PV P TP T V P T V P T
Sbjct: 733 TPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAK 792
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
T V T V T T V P T V P T V T V +P
Sbjct: 793 SGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPGLTPVKPGLTPVKPGAAKP 847
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 36/111 (32%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P P T T V P T V PA P TPV P T V P T T
Sbjct: 695 PGGAATKPVLTPAKSGITPVKPGLTPVKPALTPAKSGITPVKPGLTPVKPVLTPAKSGIT 754
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V P T V T T V P T V P T T V T V
Sbjct: 755 PVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPV 805
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 35/108 (32%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T P P T T V P PV PA TP T V P T V P T
Sbjct: 691 TPPKPGGAATKPVLTPAKSGITPVKPGLTPVKPALTPAKSGITPVKPGLTPVKPVLTPAK 750
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
T V T V T T V P T V P T S T V
Sbjct: 751 SGITPVKPGLTPVKPVLTPAKSGITPVKPGLTPVKPVLTPAKSGITPV 798
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 60.8 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA-YTPVSPAYTQVSPAYTQVSP 116
VSP +SP Y SP SP+ + Y P SP Y+P SP SPAY SP
Sbjct: 1547 VSPYRGGISPGYAPQSPFSGGFSPSSPGYAGGYSPTSPGGYSPTSPGGALTSPAYAMTSP 1606
Query: 117 AYTQVSPAYTQVSLAYTQVSLA---YTQVS--PAYTQVSPAYTQVS 157
AY+ SPAY S ++ +LA + QV P + +V P + +V+
Sbjct: 1607 AYSPQSPAYQPTSRRRSRRALAPRSHPQVPHIPQHRRVIPQHRRVT 1652
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 86 VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
VSP +SP Y P SP SP+ + Y+ SP Y+ S SPA
Sbjct: 1547 VSPYRGGISPGYAPQSPFSGGFSPSSPGYAGGYSPTSPG------GYSPTSPGGALTSPA 1600
Query: 146 YTQVSPAYTQVSPAY 160
Y SPAY+ SPAY
Sbjct: 1601 YAMTSPAYSPQSPAY 1615
Score = 44.3 bits (103), Expect = 0.034, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 61 AYTQVSPA-YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA---YTQVS- 115
Y+ SP Y+ SP SPAY SPAY P SPAY P S ++ + A + QV
Sbjct: 1578 GYSPTSPGGYSPTSPGGALTSPAYAMTSPAYSPQSPAYQPTSRRRSRRALAPRSHPQVPH 1637
Query: 116 -PAYTQVSPAYTQVSL 130
P + +V P + +V++
Sbjct: 1638 IPQHRRVIPQHRRVTV 1653
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
Y+ SP+Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S Y+ S Y+
Sbjct: 1639 YSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPT 1698
Query: 143 SPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ SP Y+ S +Y+
Sbjct: 1699 SPQYSPTSPQYSPTSPQYSPTSPSYS 1724
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y+ SP+Y+ SP Y+ SP Y P SP Y+P SP Y SP Q SP SP Y+
Sbjct: 1639 YSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQY---SPTSPQYSP----TSPQYSPT 1691
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
S Y+ S Y+ SP Y+ SP Y+ SP+Y+
Sbjct: 1692 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYS 1724
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP+Y+ SP Y SP P Y P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 1639 YSPTSPSYSPTSPQY---SPTS----PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPT 1691
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
SP Y+ S Y+ S Y+ SP Y+ SP+Y+
Sbjct: 1692 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYS 1724
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP+Y+ SP Y SP Q SP SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1643 SPSYSPTSPQY---SPTSPQYSP----TSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1695
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYT 147
+ SP Y+ S Y+ S Y+ SP+Y+
Sbjct: 1696 SPTSPQYSPTSPQYSPTSPQYSPTSPSYS 1724
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP+Y+P
Sbjct: 1685 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYSP 1725
>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
Length = 1651
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQ----VSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
SP+++ SP + SPAY+ SP + SP Y P SP ++P SP Y+ SP+++
Sbjct: 1516 SPSFSPASPTFVPASPAYSPTSPGFRAGVSPTSPNYSPTSPGFSPSSPNYSPTSPSFSPA 1575
Query: 115 SPAYTQVSPAYTQVSLAY---TQVSLAYTQ-VSPAYTQVSPAYTQVSP 158
SP ++ SP Y+ S A T L+ T SP YT SP ++ SP
Sbjct: 1576 SPIFSPTSPTYSPTSPALGPSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1623
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY-TQVSPAYTQ 113
VY+ S Y+ SP SP SP+++ SP ++P SPAY+P SP + VSP
Sbjct: 1492 VYSPSSGYSPTSPGIAITSP-RAMGSPSFSPASPTFVPASPAYSPTSPGFRAGVSP---- 1546
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP Y+ SP ++ S Y+ S +++ SP ++ SP Y+ SPA
Sbjct: 1547 TSPNYSPTSPGFSPSSPNYSPTSPSFSPASPIFSPTSPTYSPTSPA 1592
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY------- 104
A V SP Y+ SP ++ SP Y+ SP+++ SP + P SP Y+P SPA
Sbjct: 1541 RAGVSPTSPNYSPTSPGFSPSSPNYSPTSPSFSPASPIFSPTSPTYSPTSPALGPSTGRH 1600
Query: 105 ----TQVSPAYTQVSPAYTQVSP 123
+ SP YT SP ++ SP
Sbjct: 1601 LSPTSPTSPKYTPTSPGWSPTSP 1623
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP+Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1606 SPTYSPTSPALNLTSPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1665
Query: 119 TQVSPAYTQVS 129
+ SP Y+ S
Sbjct: 1666 SPASPRYSPTS 1676
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP+Y+ SP Y+ SP+++ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SPA
Sbjct: 1620 SPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPA- 1678
Query: 119 TQVSPA 124
Q+SP+
Sbjct: 1679 -QMSPS 1683
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQ---VSPAY----IPVSPAYTPVSPAYTQVSPAY 111
SP Y+ SP Y SP SP T SP Y P SP Y+P SPA SP+Y
Sbjct: 1565 SPGYSPTSP-YIPQSPFAGATSPFGTSPYATSPFYDRGAAPTSPTYSPTSPALNLTSPSY 1623
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP Y+ S A
Sbjct: 1624 SPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPA 1678
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 30/128 (23%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ--------------------- 106
+ Q +SPA Y P SP Y+P SP Q
Sbjct: 1542 GFGQSPMGAGGMSPA---AGAGYSPSSPGYSPTSPYIPQSPFAGATSPFGTSPYATSPFY 1598
Query: 107 ------VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SP Y+ SPA SP+Y+ S Y+ S +++ SP Y+ SP+++ SP Y
Sbjct: 1599 DRGAAPTSPTYSPTSPALNLTSPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRY 1658
Query: 161 TQVSSAYT 168
+ S +++
Sbjct: 1659 SPTSPSFS 1666
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ A SP Y+ SP SPAY+ SP Y P SP+++P SP Y+ SP+++ SP
Sbjct: 1588 IHRAGGMTSPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPR 1647
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
Y+ SP+++ S Y+ S + SP Y SP
Sbjct: 1648 YSPTSPSFSPASPRYSPTSPRMSPSSPKYPPTSP 1681
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 61 AYTQVSPAYTQVSPAYTQVSP--------------AYTQVSPAYIPVSPAYTPVSPAYTQ 106
AY+ SP++ SP SP A SP Y P SP SPAY+
Sbjct: 1556 AYSPTSPSFVPQSPYGGATSPFGTSPYATSPFIHRAGGMTSPTYSPTSPTLNLTSPAYSP 1615
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP Y+ SP+++ SP Y+ S +++ S Y+ SP+++ SP Y+ SP + S
Sbjct: 1616 TSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPRMSPSSPK 1675
Query: 167 Y 167
Y
Sbjct: 1676 Y 1676
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 20/137 (14%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTPVSPAYT 105
S DEA+ ++ P + Q +SP P Y+ SP AY P SP++ P SP
Sbjct: 1518 SNGGDEASSFSFMP-FGQSPLGAGGMSPG----GPGYSPSSPNAYSPTSPSFVPQSPYGG 1572
Query: 106 QVSP--------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP A SP Y+ SP S AY+ S Y+ SP+++ SP
Sbjct: 1573 ATSPFGTSPYATSPFIHRAGGMTSPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSP 1632
Query: 152 AYTQVSPAYTQVSSAYT 168
Y+ SP+++ S Y+
Sbjct: 1633 RYSPQSPSFSPTSPRYS 1649
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1599 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1658
Query: 119 TQVSPAYTQVSLAY 132
+ SP +S+ Y
Sbjct: 1659 SPASPRCKFLSIIY 1672
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A SP Y+ SPA SP Y+ SP Y P SP+++P SP Y+ SP+++ SP Y+
Sbjct: 1594 ARNPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSP 1653
Query: 121 VSPAYTQVSLAYTQVSLAY 139
SP+++ S +S+ Y
Sbjct: 1654 TSPSFSPASPRCKFLSIIY 1672
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 59 SPAYTQVSP-AYTQVSPAYTQVSPAYTQVSP---------------AYIPVSPAYTPVSP 102
P Y+ SP Y+ SP++ SP SP A P SP Y+P SP
Sbjct: 1548 GPGYSPSSPNVYSPTSPSFVPQSPFGGATSPFGTSPYAASPYYDPSARNPTSPTYSPTSP 1607
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
A SP Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP+++ SP
Sbjct: 1608 ALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRCKF 1667
Query: 163 VSSAY 167
+S Y
Sbjct: 1668 LSIIY 1672
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQ---VSP-----AYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
SP++ SP SP T SP A SP Y P SPA SP Y+ SP
Sbjct: 1563 SPSFVPQSPFGGATSPFGTSPYAASPYYDPSARNPTSPTYSPTSPALNLTSPGYSPTSPR 1622
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y+ SP+++ SP Y+ S +++ S Y+ SP+++ SP +S Y + + +
Sbjct: 1623 YSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRCKFLSIIYEPLLTLFPHQ 1682
Query: 171 ILNKI 175
IL +
Sbjct: 1683 ILQHL 1687
>gi|71030174|ref|XP_764729.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351685|gb|EAN32446.1| hypothetical protein TP02_0165 [Theileria parva]
Length = 1726
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY-TQVSPA- 124
P YTQ+ YTQ+ P YTQ+ P + + P YT + P YTQ+ P +TQ+S Y T++ P
Sbjct: 1401 PGYTQLLQGYTQLLPGYTQLPPGHTQLLPGYTQLPPGYTQLPPGHTQLSTGYDTELDPTE 1460
Query: 125 YTQVSLAYTQVSLAYTQVSP 144
Q S Q+ Y + P
Sbjct: 1461 MVQYSAECIQLIQLYKEKFP 1480
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY-TQVSPA- 159
P YTQ+ YTQ+ P YTQ+ P +TQ+ YTQ+ YTQ+ P +TQ+S Y T++ P
Sbjct: 1401 PGYTQLLQGYTQLLPGYTQLPPGHTQLLPGYTQLPPGYTQLPPGHTQLSTGYDTELDPTE 1460
Query: 160 YTQVSSAYTQVI 171
Q S+ Q+I
Sbjct: 1461 MVQYSAECIQLI 1472
Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY-TQVSP 116
P YTQ+ YTQ+ P YTQ+ P +TQ+ P Y + P YT + P +TQ+S Y T++ P
Sbjct: 1401 PGYTQLLQGYTQLLPGYTQLPPGHTQLLPGYTQLPPGYTQLPPGHTQLSTGYDTELDP 1458
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY-TQVSPA- 152
P YT + YTQ+ P YTQ+ P +TQ+ P YTQ+ YTQ+ +TQ+S Y T++ P
Sbjct: 1401 PGYTQLLQGYTQLLPGYTQLPPGHTQLLPGYTQLPPGYTQLPPGHTQLSTGYDTELDPTE 1460
Query: 153 YTQVSPAYTQVSSAYTQ 169
Q S Q+ Y +
Sbjct: 1461 MVQYSAECIQLIQLYKE 1477
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP-AYTQVSP 109
D A T+SP + V+ SP + +SP+Y SP Y P SP Y+P SP A SP
Sbjct: 1552 DHAFDGTLSPGRSPVAD-----SPGFGAMSPSYNPASPRYAPQSPGYSPTSPRADAAASP 1606
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
Y+ SP Y+ SP Q + SP+Y+ SP
Sbjct: 1607 MYSPTSPGYSPTSPKPGQ------------SPTSPSYSPTSPG 1637
>gi|441597914|ref|XP_004087417.1| PREDICTED: zinc finger protein 768 [Nomascus leucogenys]
Length = 547
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 57/157 (36%), Gaps = 18/157 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFASRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y S Y SP Y S Y +P S +
Sbjct: 122 EPQSPGYEPRSPGYEPRSPGYEPRSPGYESESSRYESQNPELKTQSPEF----------- 170
Query: 179 RESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAMGVH 215
A + F E M P+ L I++GVH
Sbjct: 171 -------EAQSSKFQEGAEMLLNPEEKSPLNISVGVH 200
>gi|213556956|gb|ACJ53769.1| RNA polymerase II, partial [Plasmodium vivax]
Length = 211
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
VSP Y+ SP + SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKXSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPV 111
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
S + Y SP ++ SPAY+ SP Y Q +A ++
Sbjct: 112 PNNPSSPHYS---PYAIASPKFSPTSPAYSISSPVYDQSGNARSK 153
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 23/137 (16%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP- 151
VSP Y+ SP + SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP
Sbjct: 52 VSPVYSVTSPKXSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPQYSPSSPV 111
Query: 152 ----------AYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHEWVWMSWY 201
Y SP ++ S AY+ I + + + N+RS + ++ S
Sbjct: 112 PNNPSSPHYSPYAIASPKFSPTSPAYS--ISSPVY-DQSGNARSKSQHPLSPAYILQS-- 166
Query: 202 PDINPTLPIAMGVHCHD 218
P+ + H D
Sbjct: 167 -------PVQVKQHIQD 176
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA----YIPV-------SPAYTPVSPA---Y 104
SPAY+ SP+ + SP SP + SPA Y PV SP +P SPA Y
Sbjct: 1573 SPAYSLPSPSVSYASPQ----SPGFAGYSPATGTYYSPVASNINATSPLRSPASPALSYY 1628
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP Y+ SP+Y+ S +Y+ S Y+ SP Y+ SP Y+ SP Y+ S
Sbjct: 1629 GPTSPRYSPSSPNYSPTSPSYSPTSPSYSPTSPGYSPTSPNYSPTSPGYSPTSPTYSPTS 1688
Query: 165 SAYT 168
+Y+
Sbjct: 1689 PSYS 1692
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 59 SPAYTQVSPA----YTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPAY 111
SP + SPA Y+ V+ SP + SPA Y P SP Y+P SP Y+ SP+Y
Sbjct: 1590 SPGFAGYSPATGTYYSPVASNINATSPLRSPASPALSYYGPTSPRYSPSSPNYSPTSPSY 1649
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP+Y+ SP Y+ S Y+ S Y+ SP Y+ SP+Y+ SP
Sbjct: 1650 SPTSPSYSPTSPGYSPTSPNYSPTSPGYSPTSPTYSPTSPSYSPTSP 1696
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 53 ATVYTVSPAYTQVSPA---YTQVSPAYTQVSP--------------AYTQVSPAYIPVSP 95
+ + SP + SPA Y SP Y+ SP +Y+ SP Y P SP
Sbjct: 1609 SNINATSPLRSPASPALSYYGPTSPRYSPSSPNYSPTSPSYSPTSPSYSPTSPGYSPTSP 1668
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
Y+P SP Y+ SP Y+ SP+Y+ SP
Sbjct: 1669 NYSPTSPGYSPTSPTYSPTSPSYSPTSP 1696
>gi|156359479|ref|XP_001624796.1| predicted protein [Nematostella vectensis]
gi|156211596|gb|EDO32696.1| predicted protein [Nematostella vectensis]
Length = 153
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 56/108 (51%)
Query: 72 VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
++P + +P +T +P + V+ +T +P + V+P + V+P ++ V+P +T +L
Sbjct: 1 LNPGHALANPGHTLANPGHALVNSDHTLANPGHALVNPGHALVNPGHSLVNPGHTLANLD 60
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGR 179
+ + + V P +T V+P + V+P +T ++ + + PG
Sbjct: 61 HALENSGHALVYPGHTLVNPGHALVNPGHTLINPGHAPPGHALVNPGH 108
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVS-------PAYIPVSPAYTPVSPAYTQVSPAY 111
+P + V+P + V+P ++ V+P +T + + V P +T V+P + V+P +
Sbjct: 30 NPGHALVNPGHALVNPGHSLVNPGHTLANLDHALENSGHALVYPGHTLVNPGHALVNPGH 89
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
T ++P + P + V+ +T V+ + V+P T V+P + V P + V+ + V
Sbjct: 90 TLINPGHAP--PGHALVNPGHTLVNPGHAPVNPDDTLVNPGHALVYPGHALVNPGHALV 146
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 58 VSPAYTQVSPAYTQVS--------------PAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
V+P ++ V+P +T + P +T V+P + V+P + ++P + P P
Sbjct: 43 VNPGHSLVNPGHTLANLDHALENSGHALVYPGHTLVNPGHALVNPGHTLINPGHAP--PG 100
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
+ V+P +T V+P + V+P T V+ + V + V+P + V+P V
Sbjct: 101 HALVNPGHTLVNPGHAPVNPDDTLVNPGHALVYPGHALVNPGHALVNPGQALV 153
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 44 DYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ-----VSPAYIPVSPAYT 98
D+ + A VY P +T V+P + V+P +T ++P + V+P + V+P +
Sbjct: 60 DHALENSGHALVY---PGHTLVNPGHALVNPGHTLINPGHAPPGHALVNPGHTLVNPGHA 116
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
PV+P T V+P + V P + V+P + V+
Sbjct: 117 PVNPDDTLVNPGHALVYPGHALVNPGHALVN 147
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++P + +P +T +P + V+ +T +P + V+P + V+P ++ V+P +T +
Sbjct: 1 LNPGHALANPGHTLANPGHALVNSDHTLANPGHALVNPGHALVNPGHSLVNPGHTLANLD 60
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ-----VSPAYTQVSSAYTQV 170
+ + + V +T V+ + V+P +T ++P + V+P +T V+ + V
Sbjct: 61 HALENSGHALVYPGHTLVNPGHALVNPGHTLINPGHAPPGHALVNPGHTLVNPGHAPV 118
>gi|123243229|ref|XP_001288414.1| dynein heavy chain [Trichomonas vaginalis G3]
gi|121857586|gb|EAX75484.1| dynein heavy chain, putative [Trichomonas vaginalis G3]
Length = 110
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P + ++ P +V P +V P Y ++ P + V P + V P + P Y P +
Sbjct: 4 PLFIKMLPLLIKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIMQLPHYIMQLPLFN 63
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+V P + +V +V Y ++ P + +V P + +V P +
Sbjct: 64 KVIPLFFKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIM 106
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
P + ++ P +V P +V P YI + P + V P + +V P + P Y P +
Sbjct: 4 PLFIKMLPLLIKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIMQLPHYIMQLPLFN 63
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+V + +V +V P Y ++ P + +V P + +V +
Sbjct: 64 KVIPLFFKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIM 106
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
P + ++ P +V P I V P Y + P + +V P + +V P + P Y +
Sbjct: 4 PLFIKMLPLLIKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIMQLPHYIMQLPLFN 63
Query: 134 QVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+V + +V P +V P Y ++ P + +V + +V+
Sbjct: 64 KVIPLFFKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVL 101
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P +V P +V P Y ++ P + +V P + V P + P Y P + +V P +
Sbjct: 11 PLLIKVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIMQLPHYIMQLPLFNKVIPLFF 70
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+V P +V Y ++ + +V P + +V P + P
Sbjct: 71 KVLPLLIKVLPHYIKMLPLFFKVLPLFNKVLPLFIMQLPL 110
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ V P + +V P + P Y P + +V P + V P V P Y ++ P + +V
Sbjct: 35 FKVLPLFNKVLPLFIMQLPHYIMQLPLFNKVIPLFFKVLPLLIKVLPHYIKMLPLFFKVL 94
Query: 116 PAYTQVSPAYTQ 127
P + +V P +
Sbjct: 95 PLFNKVLPLFIM 106
>gi|354497622|ref|XP_003510918.1| PREDICTED: uncharacterized protein C2orf55-like [Cricetulus
griseus]
Length = 1184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V +SP+ V+P +SP T +SP+ V+P +SP T +SP+ V+P +
Sbjct: 537 VRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDM 596
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNK 174
SP T +SP+ V+ +S T +SP+ V+P V+P +S + + K
Sbjct: 597 SPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPKRIVAPPERDMSPSKGDIAPTK 656
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+SP T +SP+ V+P +SP T +SP+ V+P +SP T +SP+ V+
Sbjct: 552 RDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVA 611
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
P +SP T +S + V+ V+P +SP+ ++P + IL K
Sbjct: 612 PPERDMSPPETDLSPSKGNVAPPKRIVAPPERDMSPSKGDIAPTKGIMELPSRDTILPKA 671
Query: 176 RP 177
P
Sbjct: 672 PP 673
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
++P +SP+ V+P +SP T +SP+ V+P +SP T +SP+ V+
Sbjct: 531 RDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVA 590
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P +SP T +S + V+ +SP T +SP+ V+P
Sbjct: 591 PPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAP 633
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++P ++P +SP+ V+P +SP +SP+ V+P +SP T +SP+
Sbjct: 526 MAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPS 585
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
V+P +S T +S + V+P +SP T +SP+ V+
Sbjct: 586 KGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVA 632
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
E +SP+ ++ + ++P ++P +SP+ V+P +SP T +SP+
Sbjct: 506 EPPERDMSPSKGDIACPKSFMAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSK 565
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
V+P +SP T +S + V+ +SP T +SP+ V+P +S T +
Sbjct: 566 GNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLS 625
Query: 172 LNK 174
+K
Sbjct: 626 PSK 628
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P +SP+ ++ + ++P ++P +SP+ V+P +SP T +SP+
Sbjct: 505 MEPPERDMSPSKGDIACPKSFMAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPS 564
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
V+P +S T +S + V+P +SP T +SP+ V+
Sbjct: 565 KGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVA 611
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV--------------SPAYTPVS 101
+SP T +SP+ V+P + P +SP+ + +P +S
Sbjct: 482 RDMSPPETDLSPSKGAVAPPKRIMEPPERDMSPSKGDIACPKSFMAPPERDLAPPVRDMS 541
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P+ V+P +SP T +SP+ V+ +S T +SP+ V+P +SP T
Sbjct: 542 PSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPET 601
Query: 162 QVSSAYTQV 170
+S + V
Sbjct: 602 DLSPSKGNV 610
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV-------SPA 110
++P + + P +SP T +SP+ V+P + P +SP+ + +P
Sbjct: 470 IAPPKSIMVPPERDMSPPETDLSPSKGAVAPPKRIMEPPERDMSPSKGDIACPKSFMAPP 529
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++P +SP+ V+ +S T +SP+ V+P +SP T +S + V
Sbjct: 530 ERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNV 589
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
++P +SP+ ++P + + P +SP T +SP+ V+P + P +SP+
Sbjct: 456 MAPPERDMSPSKGDIAPPKSIMVPPERDMSPPETDLSPSKGAVAPPKRIMEPPERDMSPS 515
Query: 125 YTQVS-----LAYTQVSLA--YTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++ +A + LA +SP+ V+P +SP T +S + V
Sbjct: 516 KGDIACPKSFMAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNV 568
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV-SPAYTPVSPAYTQVSPAYTQV 114
Y+ SP P S Y VSP Y+ SP P+ SP+Y P S ++ SP Y+
Sbjct: 1555 YSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSAT 1614
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
SP Y+ SP Y+ SL+Y+ S Y+ SP Y S AY+ SP+Y
Sbjct: 1615 SPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN 1661
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV--------SPAYTQVSPAYTQVSPAYT 119
Y+ P T ++T SP Y PVSP Y+P SP+Y S ++ SP Y+
Sbjct: 1554 GYSPSPPVCTPGPGSFTSSSP-YNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYS 1612
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ SL+Y+ SP Y+ SP Y S AY+ S +Y
Sbjct: 1613 ATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN 1661
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV-SPAYTPVSPAYTQVSPAYTQV 114
Y+ SP P S Y VSP Y+ SP P+ SP+Y P S ++ SP Y+
Sbjct: 1502 YSPSPPVCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSAT 1561
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
SP Y+ SP Y+ SL+Y+ S Y+ SP Y S AY+ SP+Y
Sbjct: 1562 SPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN 1608
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV--------SPAYTQVSPAYTQVSPAYT 119
Y+ P T ++T SP Y PVSP Y+P SP+Y S ++ SP Y+
Sbjct: 1501 GYSPSPPVCTPGPGSFTSSSP-YNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYS 1559
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ SL+Y+ SP Y+ SP Y S AY+ S +Y
Sbjct: 1560 ATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN 1608
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum NZE10]
Length = 1773
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 64/150 (42%), Gaps = 49/150 (32%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------------------- 96
SPA SPAY SP+Y+ SPAYT SP+Y P SPA
Sbjct: 1590 SPAAGITSPAYAPTSPSYSPASPAYTPTSPSYSPTSPAYSGGGRGSKVSPTSPSYSPTSP 1649
Query: 97 ---------------YTPVSPAY---TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
Y+P SPA+ + SP Y+ SP Y+ SP Y+ S AY+ S A
Sbjct: 1650 SYSPTSPSYSPTSPNYSPTSPAHAPGSATSPKYSPTSPQYSPTSPQYSPTSPAYSPTSPA 1709
Query: 139 YTQ---------VSPAYTQVSPAYTQVSPA 159
Y SP+Y+ SP Y+ SPA
Sbjct: 1710 YRSNGAGSSNSPTSPSYSPRSPVYSPTSPA 1739
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 37/140 (26%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y SP SPA SPAY P SP+Y+P SPAYT SP+Y+ SPAY+
Sbjct: 1575 GYSPTSPGYGSYSP----TSPAAGITSPAYAPTSPSYSPASPAYTPTSPSYSPTSPAYSG 1630
Query: 121 VSPA------------------------------YTQVSLAY---TQVSLAYTQVSPAYT 147
Y+ S A+ + S Y+ SP Y+
Sbjct: 1631 GGRGSKVSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPAHAPGSATSPKYSPTSPQYS 1690
Query: 148 QVSPAYTQVSPAYTQVSSAY 167
SP Y+ SPAY+ S AY
Sbjct: 1691 PTSPQYSPTSPAYSPTSPAY 1710
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQVSPAYTQVSP 116
SP Y+ SP Y+ SP Y+ SPAY+ SPAY + +P SP+Y+ SP Y+ SP
Sbjct: 1679 SPKYSPTSPQYSPTSPQYSPTSPAYSPTSPAYRSNGAGSSNSPTSPSYSPRSPVYSPTSP 1738
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
A SP Y+ SP ++ SPAY+ SP
Sbjct: 1739 AQDADSPNSPD----------KYSPTSPQHSPTSPAYSPASP 1770
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
AY+ SPAY+ SP Y+ SP Y+ SP Y P SP Y+P SPA +SPA
Sbjct: 1626 AYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSPA---MSPA 1672
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
AY+ SPAY+ SP Y+ SP Y P SP Y+P SP Y+ SPA +SPA
Sbjct: 1626 AYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSPA---MSPA 1672
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
AY+ SPAY+ SP Y P SP Y+P SP Y+ SP Y+ SPA +SPA
Sbjct: 1626 AYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSPA---MSPA 1672
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
AY+ SPAY P SP Y+P SP Y+ SP Y+ SP Y+ SPA +
Sbjct: 1626 AYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSPAMS 1670
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
AY P SPAY+P SP Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1626 AYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSPAMS 1670
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SPAY+ SP Y+ SP Y+ SP Y+ SP Y P SPA +P
Sbjct: 1631 SPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSPAMSP 1671
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 49/129 (37%), Gaps = 37/129 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP--------- 109
SPAY P T SP SP + Y P SP+ SP SP
Sbjct: 1553 SPAYAS--PYGTAASPFNAMASPYSRAGNAFYSPRSPS----SPGGVAASPGYSPTSPTY 1606
Query: 110 -------------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
AY+ SPAY+ SP Y+ S Y+ S Y+ SP Y+ S
Sbjct: 1607 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSS 1666
Query: 151 PAYTQVSPA 159
PA +SPA
Sbjct: 1667 PA---MSPA 1672
>gi|321477925|gb|EFX88883.1| hypothetical protein DAPPUDRAFT_311119 [Daphnia pulex]
Length = 992
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+PAY +P+Y Q +PAY +PAY Q +P+Y Q + AY Q + AY Q +PAY Q +PA
Sbjct: 387 TAPAYEQPAPSYEQQAPAYP-SAPAYEQPAPSYEQQAPAYEQPAPAYDQQAPAYEQPAPA 445
Query: 153 YTQVSPAYTQVSSAY 167
Y +PAY Q +AY
Sbjct: 446 YDHQAPAYEQAPAAY 460
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E +A Y +PAY Q +P+Y Q +PAY Q +PAY Q +PAY +PAY +PAY Q
Sbjct: 399 EQQAPAYPSAPAYEQPAPSYEQQAPAYEQPAPAYDQQAPAYEQPAPAYDHQAPAYEQAPA 458
Query: 110 AY 111
AY
Sbjct: 459 AY 460
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRE 180
+PAY Q + +Y Q + AY +PAY Q +P+Y Q +PAY Q + AY Q +P
Sbjct: 387 TAPAYEQPAPSYEQQAPAYP-SAPAYEQPAPSYEQQAPAYEQPAPAYDQQAPAYEQPAPA 445
Query: 181 SNSRSSAYE 189
+ ++ AYE
Sbjct: 446 YDHQAPAYE 454
>gi|357617693|gb|EHJ70933.1| hypothetical protein KGM_14791 [Danaus plexippus]
Length = 4460
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 59 SPAYTQVSPAYTQVSPAY------------TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
SP + Q SP + Q SP + TQ SP + Q SP + SP + SP + Q
Sbjct: 2272 SPMHPQQSPMHPQQSPIHQQSPMHSQNQMTTQNSPMHPQQSPIHPQQSPMHPQQSPMHPQ 2331
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SP ++Q SP + Q S + Q S ++Q S + Q SP +TQ SP + +SP +
Sbjct: 2332 QSPMHSQQSPMHPQQSSMHPQQSPMHSQQSPMHMQQSPMHTQQSPMQSSMSPQH 2385
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
++ SP ++Q + TQ SP + Q SP + Q SP + SP + SP ++Q SP + Q
Sbjct: 2288 IHQQSPMHSQ-NQMTTQNSPMHPQQSPIHPQQSPMHPQQSPMHPQQSPMHSQQSPMHPQQ 2346
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
S + Q SP ++Q S + Q S +TQ SP + +SP +
Sbjct: 2347 SSMHPQQSPMHSQQSPMHMQQSPMHTQQSPMQSSMSPQH 2385
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + Q SP + Q SP + Q SP ++Q SP + S + SP ++Q SP + Q SP +
Sbjct: 2312 SPIHPQQSPMHPQQSPMHPQQSPMHSQQSPMHPQQSSMHPQQSPMHSQQSPMHMQQSPMH 2371
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSP 144
TQ SP + +S + L + SP
Sbjct: 2372 TQQSPMQSSMSPQHFLQQLQAQRTSP 2397
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP ++ SP Y+ SP + SP + SP + P SPA+TP SP Y+ SPAY Q
Sbjct: 1555 SPGFSPTSPGYSPTSPGMSVSSPGFAS-SPRFSPASPAFTPTSPGYSPTSPAYGQ--SGI 1611
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNK 174
+ SP+Y+ S +Y+ S Y+ SP Y+ SP+Y+ SP Y+ S + + K
Sbjct: 1612 SPTSPSYSPTSPSYSPTSPNYSPSSPNYSPTSPSYSPTSPVYSPTSPQFGSNVTTK 1667
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 19/82 (23%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS-------------------PAYIPVSPA 96
+ SP ++ SPA+T SP Y+ SPAY Q P Y P SP
Sbjct: 1579 FASSPRFSPASPAFTPTSPGYSPTSPAYGQSGISPTSPSYSPTSPSYSPTSPNYSPSSPN 1638
Query: 97 YTPVSPAYTQVSPAYTQVSPAY 118
Y+P SP+Y+ SP Y+ SP +
Sbjct: 1639 YSPTSPSYSPTSPVYSPTSPQF 1660
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 59/148 (39%), Gaps = 50/148 (33%)
Query: 59 SPAYTQVSPAYTQVSPAYTQV--------------------------SPAYTQVSPAYIP 92
SPA+T SP Y+ SPAY Q SP Y+ SP+Y P
Sbjct: 1589 SPAFTPTSPGYSPTSPAYGQSGISPTSPSYSPTSPSYSPTSPNYSPSSPNYSPTSPSYSP 1648
Query: 93 VSPAYTPVSPAYTQ--------------------VSPAYTQVSP--AYTQVSPAYTQVSL 130
SP Y+P SP + SP Y+ SP +Y+ SP ++
Sbjct: 1649 TSPVYSPTSPQFGSNVTTKQHSPTSPTSPTSYSPTSPMYSPTSPVGSYSPTSPNFSNS-- 1706
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ VS Y+ SP ++ SP Y+ SP
Sbjct: 1707 PTSPVSAPYSASSPKWSPTSPTYSPTSP 1734
>gi|403277320|ref|XP_003930315.1| PREDICTED: uncharacterized protein LOC101041654 [Saimiri
boliviensis boliviensis]
Length = 1013
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP + SP + SPA SP + P SP SP + SP Y SP Y SP+Y
Sbjct: 542 SPRFEPESPGFESRSPALVPPSPEFAPRSPESDSQSPEFESQSPRYEPQSPGYEPKSPSY 601
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT---QVILN 173
S Y S Y S Y +P + +P + SS + +V+LN
Sbjct: 602 EPRSPGYEPRSPGYESESSRYEPQNPEFKTQTPEFEAQSSKFQEGEEVLLN 652
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 43/104 (41%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SPA SP + SP SP + SP Y SP Y SP+Y
Sbjct: 542 SPRFEPESPGFESRSPALVPPSPEFAPRSPESDSQSPEFESQSPRYEPQSPGYEPKSPSY 601
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
SP Y S Y S Y +P + +P + S + +
Sbjct: 602 EPRSPGYEPRSPGYESESSRYEPQNPEFKTQTPEFEAQSSKFQE 645
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP + P SP + SPA SP + SP S + S Y SP Y SP
Sbjct: 540 PQSPRFEPESPGFESRSPALVPPSPEFAPRSPESDSQSPEFESQSPRYEPQSPGYEPKSP 599
Query: 152 AYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA---FFHEWVWMSWYPDINPTL 208
+Y SP Y S Y E +++ +EA F E + P+ L
Sbjct: 600 SYEPRSPGYEPRSPGYESESSRYEPQNPEFKTQTPEFEAQSSKFQEGEEVLLNPEEKSPL 659
Query: 209 PIAMGVHCHDS 219
I++GVH DS
Sbjct: 660 NISLGVHPLDS 670
Score = 43.1 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 31/73 (42%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
+D + SP Y SP Y SP+Y SP Y SP Y S Y P +P +
Sbjct: 573 SDSQSPEFESQSPRYEPQSPGYEPKSPSYEPRSPGYEPRSPGYESESSRYEPQNPEFKTQ 632
Query: 108 SPAYTQVSPAYTQ 120
+P + S + +
Sbjct: 633 TPEFEAQSSKFQE 645
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 35/136 (25%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSP-AYT---------------------QVSPAYIPV 93
Y SP +SP+Y+ SPAY SP YT SP YIP+
Sbjct: 1581 YIPSPG-GAMSPSYSPTSPAYEPRSPXGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYIPI 1639
Query: 94 SPAYTPVS----PA----YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+P + P + PA Y+ SP Y+ SP Y+ SP Y+ S + Y+ SP
Sbjct: 1640 TPQHHPATARHHPAIHLLYSPTSPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPG 1695
Query: 146 YTQVSPAYTQVSPAYT 161
Y+ SP Y+ SPA +
Sbjct: 1696 YSPTSPTYSLTSPAIS 1711
Score = 43.9 bits (102), Expect = 0.045, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 63/187 (33%), Gaps = 77/187 (41%)
Query: 59 SPAYTQVSPAY-------------------TQVSPAYT---------------------- 77
+PAY SP+ + SP Y+
Sbjct: 1525 TPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPS 1584
Query: 78 ---QVSPAYTQVSPAYIPVSP-AYTPVS-------------------------PAYTQVS 108
+SP+Y+ SPAY P SP YTP S P Q
Sbjct: 1585 PGGAMSPSYSPTSPAYEPRSPXGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYIPITPQHH 1644
Query: 109 PAYTQVSPA----YTQVSPAYTQVSLAYTQVSLAYTQVSP---AYTQVSPAYTQVSPAYT 161
PA + PA Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1645 PATARHHPAIHLLYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYS 1704
Query: 162 QVSSAYT 168
S A +
Sbjct: 1705 LTSPAIS 1711
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1664 TYSPTSPKYSPTSPTYSPTSPK-----------GSTYSPTSPGYSPTSPTYSLTSPA--- 1709
Query: 114 VSP 116
+SP
Sbjct: 1710 ISP 1712
>gi|344255881|gb|EGW11985.1| putative DNA repair protein RAD50 [Cricetulus griseus]
Length = 249
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 32/109 (29%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 59 YTDAHACYTDAHARYTDAHACYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDA 118
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT YT YT YT YT + YT
Sbjct: 119 HARYTDAHARYTDAHACYTDAHAWYTDAHACYTDAHACYTDAHACYTDA 167
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 33/116 (28%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
YT YT YT YT Y YT YT YT
Sbjct: 62 AHACYTDAHARYTDAHACYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHAR 121
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
YT YT YT YT YT YT YT + YT +
Sbjct: 122 YTDAHARYTDAHACYTDAHAWYTDAHACYTDAHACYTDAHACYTDAHARYTDAHVR 177
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 33/113 (29%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V YT YT YT YT Y YT YT YT
Sbjct: 27 VHVRYTDAHARYTDAHARYTDAHARYTDAHARYTDAHACYTDAHARYTDAHACYTDAHAR 86
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT YT YT YT YT YT + YT
Sbjct: 87 YTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHACYTDA 139
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 32/109 (29%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 52 YTDAHARYTDAHACYTDAHARYTDAHACYTDAHARYTDAHARYTDAHARYTDAHARYTDA 111
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT YT YT YT YT + YT
Sbjct: 112 HARYTDAHARYTDAHARYTDAHACYTDAHAWYTDAHACYTDAHACYTDA 160
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 36/121 (29%), Gaps = 1/121 (0%)
Query: 51 DEATVYTVSPA-YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
D YT + A YT YT YT YT Y YT YT
Sbjct: 61 DAHACYTDAHARYTDAHACYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHA 120
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
YT YT YT YT YT YT YT YT YT
Sbjct: 121 RYTDAHARYTDAHACYTDAHAWYTDAHACYTDAHACYTDAHACYTDAHARYTDAHVRYTD 180
Query: 170 V 170
Sbjct: 181 A 181
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 32/109 (29%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 45 YTDAHARYTDAHARYTDAHACYTDAHARYTDAHACYTDAHARYTDAHARYTDAHARYTDA 104
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT YT YT YT YT + YT
Sbjct: 105 HARYTDAHARYTDAHARYTDAHARYTDAHACYTDAHAWYTDAHACYTDA 153
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 32/109 (29%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 38 YTDAHARYTDAHARYTDAHARYTDAHACYTDAHARYTDAHACYTDAHARYTDAHARYTDA 97
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT YT YT YT YT + YT
Sbjct: 98 HARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHACYTDAHAWYTDA 146
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 33/116 (28%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
YT YT YT YT Y YT YT YT
Sbjct: 76 AHACYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHAC 135
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
YT YT YT YT YT YT YT + YT +
Sbjct: 136 YTDAHAWYTDAHACYTDAHACYTDAHACYTDAHARYTDAHVRYTDAHARYTDAHVR 191
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 33/109 (30%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 115 YTDAHARYTDAHARYTDAHACYTDAHAWYTDAHACYTDAHACYTDAHACYTDAHARYTDA 174
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT + YT YT YT YT YT V
Sbjct: 175 HVRYTDAHARYTDAHVRYTDAHVCYTDAHVCYTDAHVCYTDAHVCYTTV 223
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 35/118 (29%), Gaps = 2/118 (1%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 108 YTDAHARYTDAHARYTDAHARYTDAHACYTDAHAWYTDAHACYTDAHACYTDAHACYTDA 167
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT--QVILNKIRP 177
YT + YT YT YT YT YT YT V +R
Sbjct: 168 HARYTDAHVRYTDAHARYTDAHVRYTDAHVCYTDAHVCYTDAHVCYTDAHVCYTTVRD 225
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 32/109 (29%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 101 YTDAHARYTDAHARYTDAHARYTDAHARYTDAHACYTDAHAWYTDAHACYTDAHACYTDA 160
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT + YT YT YT YT YT
Sbjct: 161 HACYTDAHARYTDAHVRYTDAHARYTDAHVRYTDAHVCYTDAHVCYTDA 209
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 36/121 (29%), Gaps = 1/121 (0%)
Query: 51 DEATVYTVSPA-YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
D YT + A YT YT YT YT Y YT YT
Sbjct: 75 DAHACYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHA 134
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
YT YT YT YT YT YT YT YT YT
Sbjct: 135 CYTDAHAWYTDAHACYTDAHACYTDAHACYTDAHARYTDAHVRYTDAHARYTDAHVRYTD 194
Query: 170 V 170
Sbjct: 195 A 195
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 31/109 (28%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT YT YT YT Y YT YT YT YT
Sbjct: 94 YTDAHARYTDAHARYTDAHARYTDAHARYTDAHARYTDAHACYTDAHAWYTDAHACYTDA 153
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
YT YT YT YT YT YT YT
Sbjct: 154 HACYTDAHACYTDAHARYTDAHVRYTDAHARYTDAHVRYTDAHVCYTDA 202
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 28/94 (29%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
YT YT YT YT Y YT YT YT
Sbjct: 132 AHACYTDAHAWYTDAHACYTDAHACYTDAHACYTDAHARYTDAHVRYTDAHARYTDAHVR 191
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
YT YT + YT + YT YT V
Sbjct: 192 YTDAHVCYTDAHVCYTDAHVCYTDAHVCYTTVRD 225
>gi|380816582|gb|AFE80165.1| zinc finger protein 768 [Macaca mulatta]
gi|383421637|gb|AFH34032.1| zinc finger protein 768 [Macaca mulatta]
gi|384949466|gb|AFI38338.1| zinc finger protein 768 [Macaca mulatta]
Length = 540
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
SP Y S Y S +Y S Y +P SP SS + +++LN
Sbjct: 122 EPQSPGYEPRSPGYEPRSPSYESESSRYESQNPELKTQSPELEAQSSKFQEGAEMLLN 179
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 51/140 (36%), Gaps = 22/140 (15%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY--------------TQVSLAYTQVSL 137
P SP + P SP + SP + SP + SP S + S
Sbjct: 60 PQSPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSP 119
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT--QVILNKIRPGRESNSRSSAYEAFFHEW 195
Y SP Y SP Y SP+Y SS Y L P E+ S + F E
Sbjct: 120 RYEPQSPGYEPRSPGYEPRSPSYESESSRYESQNPELKTQSPELEAQS------SKFQEG 173
Query: 196 VWMSWYPDINPTLPIAMGVH 215
M P+ L I++GVH
Sbjct: 174 AEMLLNPEEKSPLNISVGVH 193
>gi|83317456|ref|XP_731168.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
gi|23491122|gb|EAA22733.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
yoelii]
Length = 2312
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 59 SPAYTQVSPAY--------TQVSPA------------YTQVSPAYTQVSPAYIPVSPAYT 98
SP+Y+ SP Y + SP Y +SP Y+ SP Y P SP Y+
Sbjct: 2149 SPSYSPTSPTYNANNNAYYSPTSPKNQASDDMGGNKKYNIMSPVYSVTSPKYSPTSPQYS 2208
Query: 99 PVS-----PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY--TQVSLAYTQVSPAYTQVSP 151
P S P+ Q SP Y+ SP ++ SPAY+ S Y + +SPAY S
Sbjct: 2209 PSSPVPNNPSSPQYSP-YSITSPKFSPTSPAYSISSPVYDKNENMAGKNPLSPAYMLQSR 2267
Query: 152 AYTQVSPAYTQVSSAYTQVILNKIR 176
+ + TQV S Q N ++
Sbjct: 2268 VQIRQNAQGTQVFSPIQQGGANDVQ 2292
>gi|354507253|ref|XP_003515671.1| PREDICTED: zinc finger protein 768 [Cricetulus griseus]
Length = 534
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP + SP + SP + SP ++P SP + P SP SP + SP Y SP Y
Sbjct: 62 SPGFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFVSQSPRYGPQSPGY 121
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQV-SPAYTQVSPAYTQVSSAYTQ 169
S Y S + SP Y + +P + SP + SS + +
Sbjct: 122 DPKSPGYEPGSPRFEPKSPGYDEAQNPEFKTHSPEFETQSSKFQE 166
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 55/144 (38%), Gaps = 19/144 (13%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP + SP + SP + SP + P SP + SP SP + SP Y S Y
Sbjct: 62 SPGFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFVSQSPRYGPQSPGY 121
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQV-SPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAF 191
S Y SP + SP Y + +P + S + E+ S +
Sbjct: 122 DPKSPGYEPGSPRFEPKSPGYDEAQNPEFKTHSPEF------------ETQS------SK 163
Query: 192 FHEWVWMSWYPDINPTLPIAMGVH 215
F E M P+ L I +GVH
Sbjct: 164 FQEGAEMLVNPEEKNPLSIPLGVH 187
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 22/127 (17%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAY--------------------- 97
SP+ T SP Y+ SP Y+ S Y+ SP Y P SP+Y
Sbjct: 1596 SPSLTPASPNYSPTSPTYSPTSTNYSPTSPNYSPNSPSYPQNSPLYSPSSPSYSPTTPLY 1655
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
+P SPAY+ SP+Y+ SP Y+ +P+Y+ S +Y S Y+ SP Y+ SP+++ S
Sbjct: 1656 SPTSPAYSPTSPSYSPTSPNYS-TNPSYSPTSPSYVPTSPVYSPTSPTYSPTSPSFSPKS 1714
Query: 158 PAYTQVS 164
Y+ S
Sbjct: 1715 STYSPAS 1721
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 22/117 (18%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ------------------- 113
SP+ T SP Y+ SP Y P S Y+P SP Y+ SP+Y Q
Sbjct: 1596 SPSLTPASPNYSPTSPTYSPTSTNYSPTSPNYSPNSPSYPQNSPLYSPSSPSYSPTTPLY 1655
Query: 114 --VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
SPAY+ SP+Y+ S Y+ + +Y+ SP+Y SP Y+ SP Y+ S +++
Sbjct: 1656 SPTSPAYSPTSPSYSPTSPNYS-TNPSYSPTSPSYVPTSPVYSPTSPTYSPTSPSFS 1711
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 43/148 (29%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPAY+ SP+Y+ SP Y+ +P+Y+ SP+Y+P SP Y+P SP Y+ SP+++ S Y
Sbjct: 1659 SPAYSPTSPSYSPTSPNYS-TNPSYSPTSPSYVPTSPVYSPTSPTYSPTSPSFSPKSSTY 1717
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQ------------------------------------- 141
+ SP Y+ S +Y+ S +T
Sbjct: 1718 SPASPTYSPASPSYSPSSPQFTPGSPSFSSTSPSYSPSSPQYSPGSPSYSPSSPKYSPTS 1777
Query: 142 -----VSPAYTQVSPAYTQVSPAYTQVS 164
SP++ SP YT +P Y+ S
Sbjct: 1778 PNYSPTSPSFVGSSPQYTPATPQYSPTS 1805
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 59 SPAYTQVSPAYTQ--------------VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY 104
SP Y+ SP+Y Q +P Y+ SPAY+ SP+Y P SP Y+ +P+Y
Sbjct: 1624 SPNYSPNSPSYPQNSPLYSPSSPSYSPTTPLYSPTSPAYSPTSPSYSPTSPNYS-TNPSY 1682
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
+ SP+Y SP Y+ SP Y+ S +++ S Y+ SP
Sbjct: 1683 SPTSPSYVPTSPVYSPTSPTYSPTSPSFSPKSSTYSPASP 1722
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
Y+ +P+Y+ SP+Y SP Y+ SP Y+ SP++ P S Y+P SP Y+
Sbjct: 1676 YSTNPSYSPTSPSYVPTSPVYSPTSPTYSPTSPSFSPKSSTYSPASPTYSP 1726
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 43/146 (29%)
Query: 59 SPAYTQVSPAY----TQVSPAYTQ------------------------------------ 78
+P SP+ + SP Y+Q
Sbjct: 1532 TPGGPSFSPSGASDASGYSPNYSQWSPQPGSPSSPGPAMSPYIPSPVGAHSPSYSPSSPT 1591
Query: 79 ---VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
SP+ T SP Y P SP Y+P S Y+ SP Y+ SP+Y Q SP Y+ S +Y+
Sbjct: 1592 YAPPSPSLTPASPNYSPTSPTYSPTSTNYSPTSPNYSPNSPSYPQNSPLYSPSSPSYSPT 1651
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ Y+ SPAY+ SP+Y+ SP Y+
Sbjct: 1652 TPLYSPTSPAYSPTSPSYSPTSPNYS 1677
>gi|313225875|emb|CBY21018.1| unnamed protein product [Oikopleura dioica]
Length = 928
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 7/107 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
YT T S AY+ SP Y+ SP Y+ SPAY P SP+Y+P SP Y+ SP Y+ S
Sbjct: 819 YTGGDGGTPGSKAYSPTSPTYSPSSPNYSPSSPAYSPASPSYSPTSPNYSPSSPQYSPAS 878
Query: 116 P-AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P Y+ SP+ Y+ S +Y+ SPAY+ SPAY+ SPAY+
Sbjct: 879 PSGYSPTSPS------NYSPASPSYSPTSPAYSPSSPAYSPASPAYS 919
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 61 AYTQVSPA-YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
Y+ SP+ Y+ SP+Y+ SPAY+ SPAY P SPAY+P
Sbjct: 881 GYSPTSPSNYSPASPSYSPTSPAYSPSSPAYSPASPAYSP 920
>gi|221122015|ref|XP_002163596.1| PREDICTED: uncharacterized protein LOC100204099 [Hydra
magnipapillata]
Length = 200
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
YT + YT + YT + YT + YI + YT + YT + YT + YT
Sbjct: 4 KEYTYLIKKYTHLIKEYTHLIKEYTHLIKEYIHLIKEYTHLIKEYTHLIKEYTHLIKEYT 63
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
+ YT + YT + YT + YT + YT + T +
Sbjct: 64 HLIKEYTHLIKEYTHLIKEYTHLIKEYTHLIKEYTHLIKEDTHL 107
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
YT + YT + YT + Y + Y + YT + YT + YT + YT
Sbjct: 4 KEYTYLIKKYTHLIKEYTHLIKEYTHLIKEYIHLIKEYTHLIKEYTHLIKEYTHLIKEYT 63
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + T +I
Sbjct: 64 HLIKEYTHLIKEYTHLIKEYTHLIKEYTHLIKEYTHLIKEDTHLI 108
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
hirsutum FP-91666 SS1]
Length = 1703
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1601 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1660
Query: 119 TQVSP 123
+ SP
Sbjct: 1661 SPASP 1665
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 53 ATVYTVSPAYTQ---VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
A+ Y SP Y+ SP Y+ SPA SP Y+ SP Y P SP+++P SP Y+ SP
Sbjct: 1585 ASPYATSPFYSGRAPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSP 1644
Query: 110 AYTQVSPAYTQVSPAYTQVS 129
+++ SP Y+ SP+++ S
Sbjct: 1645 SFSPTSPRYSPTSPSFSPAS 1664
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP Y+P SPA SP Y+ SP Y+ SP+++ S Y+ S +++ SP Y+ SP
Sbjct: 1599 PTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSP 1658
Query: 152 AYTQVSP 158
+++ SP
Sbjct: 1659 SFSPASP 1665
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 59 SPAYTQVSP-AYTQVSPAYTQVSPAYTQVSP------AYIPVSPAYTPVSPAYTQVSPAY 111
+P Y+ SP Y+ SP Y SP SP A P P SP Y+ SPA
Sbjct: 1553 APGYSPSSPNVYSPTSP-YVPQSPFAGATSPFGASPYATSPFYSGRAPTSPTYSPTSPAL 1611
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP Y+ S +++ S Y+ SP+++ SP Y+ SP+++ S
Sbjct: 1612 NLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPAS 1664
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 19/118 (16%)
Query: 65 VSPAYTQVSPAYTQVSP-AYTQVSPAYIPVSP---AYTP-------VSPAYTQ---VSPA 110
+SPA +P Y+ SP Y+ SP Y+P SP A +P SP Y+ SP
Sbjct: 1549 MSPA----APGYSPSSPNVYSPTSP-YVPQSPFAGATSPFGASPYATSPFYSGRAPTSPT 1603
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SPA SP Y+ S Y+ S +++ SP Y+ SP+++ SP Y+ S +++
Sbjct: 1604 YSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFS 1661
>gi|15489322|gb|AAH13760.1| Zinc finger protein 768 [Homo sapiens]
gi|189067899|dbj|BAG37837.1| unnamed protein product [Homo sapiens]
Length = 520
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 55/157 (35%), Gaps = 25/157 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 42 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 101
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y S Y S Y + SP + SS
Sbjct: 102 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSK------------ 149
Query: 179 RESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAMGVH 215
F E M PD L I++GVH
Sbjct: 150 -------------FQEGAEMLLNPDEKSPLNISVGVH 173
>gi|443687788|gb|ELT90670.1| hypothetical protein CAPTEDRAFT_102656, partial [Capitella teleta]
Length = 92
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P + ++P + QV+P Q+ P Q+SP + ++P ++P Q++P Q++P
Sbjct: 4 NPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGT 63
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPA 145
Q++P Q++ Q++ Q++P
Sbjct: 64 MQINPGTMQMNPGTMQMNPGTMQMNPG 90
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
+P + ++P + QV+P Q+ P + +SP ++P Q++P Q++P Q++P
Sbjct: 4 NPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGT 63
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPA 152
Q++ Q++ Q++P Q++P
Sbjct: 64 MQINPGTMQMNPGTMQMNPGTMQMNPG 90
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
+P + ++P + QV+P + + P +SP Q++P Q++P Q++P Q++
Sbjct: 4 NPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGT 63
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Q++ Q++P Q++P Q++P
Sbjct: 64 MQINPGTMQMNPGTMQMNPGTMQMNPG 90
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 46/87 (52%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
+P + ++P ++ V+P + P Q+SP Q++P Q++P Q++ Q++
Sbjct: 4 NPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGT 63
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSA 166
Q++P Q++P Q++P Q++
Sbjct: 64 MQINPGTMQMNPGTMQMNPGTMQMNPG 90
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++P + QV+P Q+ P Q+SP Q++P + ++P ++P Q++P Q++P
Sbjct: 10 LNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGTMQINPG 69
Query: 118 YTQVSPAYTQVSLAYTQVS 136
Q++P Q++ Q++
Sbjct: 70 TMQMNPGTMQMNPGTMQMN 88
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
+P +I ++P + V+P Q+ P Q+SP Q++P Q++ Q++ Q++P
Sbjct: 4 NPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGT 63
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQV 170
Q++P Q++P Q++ Q+
Sbjct: 64 MQINPGTMQMNPGTMQMNPGTMQM 87
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+P +P + ++P + QV+P Q+ P Q+SP Q++ Q++ Q++P Q++
Sbjct: 1 MPRNPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMN 60
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
P Q++P Q++ Q+
Sbjct: 61 PGTMQINPGTMQMNPGTMQM 80
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP Q++P Q++P Q++P Q++P + ++P ++P Q++P Q++P
Sbjct: 31 MSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGTMQINPGTMQMNPGTMQMNPGTMQMNPG 90
>gi|225378602|ref|ZP_03755823.1| hypothetical protein ROSEINA2194_04270 [Roseburia inulinivorans DSM
16841]
gi|225209439|gb|EEG91793.1| hypothetical protein ROSEINA2194_04270 [Roseburia inulinivorans DSM
16841]
Length = 545
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 56/113 (49%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++ A T+VS +++ A ++ + Q++ A V+ ++ A TQVS ++ A
Sbjct: 267 IAEAETEVSDGEQELADAKEELEDGWEQLADAKKEVAEGQMELADAKTQVSDGEKELDAA 326
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+V+ +++ A TQ++ Q++ A Q+S ++ T++ + Q+
Sbjct: 327 KDKVADGEKELADAKTQLADGQNQINQAKQQISDGEASIAAYNTELDNGRKQL 379
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS +++ A ++ + Q++ A +V+ + ++ A T VS ++ A +V+
Sbjct: 274 VSDGEQELADAKEELEDGWEQLADAKKEVAEGQMELADAKTQVSDGEKELDAAKDKVADG 333
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+++ A TQ++ Q++ A Q+S ++ T++ Q+ SA Q+
Sbjct: 334 EKELADAKTQLADGQNQINQAKQQISDGEASIAAYNTELDNGRKQLESAAGQL 386
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V A ++ A T+VS +++ A ++ + ++ A V+ +++ A TQVS
Sbjct: 260 VREAQDAIAEAETEVSDGEQELADAKEELEDGWEQLADAKKEVAEGQMELADAKTQVSDG 319
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
++ A +V+ +++ A TQ++ Q++ A Q+S +++ T+ L+ R
Sbjct: 320 EKELDAAKDKVADGEKELADAKTQLADGQNQINQAKQQISDGEASIAAYNTE--LDNGRK 377
Query: 178 GRES 181
ES
Sbjct: 378 QLES 381
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP ++ SP Y+ SP + SP + SP + P SPA+TP SP Y+ SPAY Q
Sbjct: 1555 SPGFSPTSPGYSPTSPGMSVSSPGFAS-SPRFSPASPAFTPTSPGYSPTSPAYGQ--SGI 1611
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SP+Y+ S +Y+ S Y+ SP Y+ SP+Y+ SP Y+ S
Sbjct: 1612 SPTSPSYSPTSPSYSPTSPNYSPSSPNYSPTSPSYSPTSPVYSPTS 1657
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 19/82 (23%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS-------------------PAYIPVSPA 96
+ SP ++ SPA+T SP Y+ SPAY Q P Y P SP
Sbjct: 1579 FASSPRFSPASPAFTPTSPGYSPTSPAYGQSGISPTSPSYSPTSPSYSPTSPNYSPSSPN 1638
Query: 97 YTPVSPAYTQVSPAYTQVSPAY 118
Y+P SP+Y+ SP Y+ SP +
Sbjct: 1639 YSPTSPSYSPTSPVYSPTSPQF 1660
>gi|156376603|ref|XP_001630449.1| predicted protein [Nematostella vectensis]
gi|156217470|gb|EDO38386.1| predicted protein [Nematostella vectensis]
Length = 205
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 59/111 (53%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 28 TPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIECTPPYIEGTPPY 87
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + + Y +P Y + +P Y + +P Y + + Y +
Sbjct: 88 IEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYMEGTPPYIE 138
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 70 TPPYIECTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPY 129
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
+ +P Y + Y + + Y + +P Y + +P Y + +P Y + + Y + I+
Sbjct: 130 MEGTPPYIEGKPPYIEDTPPYIEGTPPYIEGTPPYIEGTPPYIKGTPPYIKGTPPYIK 187
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 35 TPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIECTPPYIEGTPPYIEGTPPY 94
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + Y + +P Y + +P Y + +P Y + Y +
Sbjct: 95 IEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYMEGTPPYIEGKPPYIE 145
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y +P Y
Sbjct: 56 TPPYIEGTPPYIEGTPPYIECTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPY 115
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
+ +P Y + + Y + + Y + P Y + +P Y + +P Y + + Y + I+
Sbjct: 116 IEGTPPYIEGTPPYMEGTPPYIEGKPPYIEDTPPYIEGTPPYIEGTPPYIEGTPPYIK 173
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y +P Y + +P Y
Sbjct: 63 TPPYIEGTPPYIECTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPY 122
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
+ +P Y + + Y + Y + +P Y + +P Y + +P Y + + Y + I+
Sbjct: 123 IEGTPPYMEGTPPYIEGKPPYIEDTPPYIEGTPPYIEGTPPYIEGTPPYIKGTPPYIK 180
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 42 TPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIECTPPYIEGTPPYIEGTPPYIEGTPPY 101
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + Y + + Y + +P Y + +P Y + P Y + + Y +
Sbjct: 102 IEGTPPYIDGTPPYIEGTPPYIEGTPPYMEGTPPYIEGKPPYIEDTPPYIE 152
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 49 TPPYIEGTPPYIEGTPPYIEGTPPYIECTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPY 108
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+P Y + + Y + + Y + +P Y + P Y + +P Y + + Y +
Sbjct: 109 IDGTPPYIEGTPPYIEGTPPYMEGTPPYIEGKPPYIEDTPPYIEGTPPYIE 159
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P Y + +P Y + +P Y + +P Y +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 1 PPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYI 60
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ +P Y + + Y + + Y + +P Y + +P Y + +P Y + + Y
Sbjct: 61 EGTPPYIEGTPPYIECTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPY 108
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 61/119 (51%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+P Y + +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P
Sbjct: 76 CTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYMEGTPP 135
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Y + P Y + + Y + + Y + +P Y + +P Y + +P Y + + Y + I+
Sbjct: 136 YIEGKPPYIEDTPPYIEGTPPYIEGTPPYIEGTPPYIKGTPPYIKGTPPYIKGTPPYIK 194
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y +P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 21 TPPYIDGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIECTPPY 80
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + + Y + +P Y +P Y + +P Y + + Y +
Sbjct: 81 IEGTPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYME 131
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 7 TPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPY 66
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + + Y + +P Y + +P Y + +P Y + Y +
Sbjct: 67 IEGTPPYIECTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIE 117
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 14 TPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPY 73
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + + Y + +P Y + +P Y +P Y + + Y +
Sbjct: 74 IECTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIE 124
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y + +P Y +P YI +P Y +P Y + +P Y + P Y
Sbjct: 84 TPPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYMEGTPPYIEGKPPY 143
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
+ +P Y + + Y + + Y + +P Y + +P Y + +P Y + + Y + I+
Sbjct: 144 IEDTPPYIEGTPPYIEGTPPYIEGTPPYIKGTPPYIKGTPPYIKGTPPYIKGTPPYIK 201
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
P Y + +P Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y + +P Y
Sbjct: 1 PPYIEGTPPYIEGTPPYIEGTPPYIDGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYI 60
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + Y + + Y + +P Y + +P Y + +P Y + + Y +
Sbjct: 61 EGTPPYIEGTPPYIECTPPYIEGTPPYIEGTPPYIEGTPPYIE 103
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y +P Y + +P Y + +P Y + +P YI P Y +P Y + +P Y + +P Y
Sbjct: 105 TPPYIDGTPPYIEGTPPYIEGTPPYMEGTPPYIEGKPPYIEDTPPYIEGTPPYIEGTPPY 164
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ +P Y + + Y + + Y + +P Y + +P Y + +P
Sbjct: 165 IEGTPPYIKGTPPYIKGTPPYIKGTPPYIKGTPPYIKGTPP 205
>gi|355710127|gb|EHH31591.1| Zinc finger protein 768 [Macaca mulatta]
gi|355756709|gb|EHH60317.1| Zinc finger protein 768 [Macaca fascicularis]
Length = 509
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 56/157 (35%), Gaps = 25/157 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 31 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 90
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y S +Y S Y +P SP SS
Sbjct: 91 EPQSPGYEPRSPGYEPRSPSYESESSRYESQNPELKTQSPELEAQSSK------------ 138
Query: 179 RESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAMGVH 215
F E M P+ L I++GVH
Sbjct: 139 -------------FQEGAEMLLNPEEKSPLNISVGVH 162
>gi|38344066|emb|CAE02745.2| OSJNBa0006B20.10 [Oryza sativa Japonica Group]
gi|116310782|emb|CAH67574.1| H0315A08.4 [Oryza sativa Indica Group]
gi|125548390|gb|EAY94212.1| hypothetical protein OsI_15986 [Oryza sativa Indica Group]
Length = 335
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQV-SPAYTQVSPAYTQVSPAYIPVSPA-------YTPV 100
DE + SP YT SP + + SP YT SP SP Y P SP YTP
Sbjct: 50 DEVSSCCPPPSPDYTPASPPHRRAASPDYTPESPPRRAASPDYSPASPPRRAASPDYTPE 109
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SP SP Y+ SP SP YT S + S YT SP SP YT SP+
Sbjct: 110 SPPRRAASPDYSPESPPRRAASPDYTPASPSRRAASPDYTPESPPRRAASPDYTPASPSR 169
Query: 161 TQVSSA--YTQVILNKIR 176
+S+ YT + R
Sbjct: 170 RAAASSPDYTPESPPRRR 187
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------YTPVSPAYTQV- 107
SP YT SP+ SP YT SP SP Y P SP+ YTP SP +
Sbjct: 130 ASPDYTPASPSRRAASPDYTPESPPRRAASPDYTPASPSRRAAASSPDYTPESPPRRRAA 189
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP Y+ +P SP Y+ + S Y+ +P SP YT +SP S Y
Sbjct: 190 SPDYSPSTPPRRAASPDYSPSTPPRRAASPDYSPSTPPRRAASPDYTPMSPPRRAASPDY 249
Query: 168 TQVILNK 174
TQ+ +
Sbjct: 250 TQMTPPR 256
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQV--SPAYIP--------VSPAYTPVSPAYTQV 107
SP YT SP SP YT SP+ SP Y P SP Y+P +P
Sbjct: 144 ASPDYTPESPPRRAASPDYTPASPSRRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAA 203
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SP Y+ +P SP Y+ + S YT +SP SP YTQ++P S Y
Sbjct: 204 SPDYSPSTPPRRAASPDYSPSTPPRRAASPDYTPMSPPRRAASPDYTQMTPPRRAASPDY 263
Query: 168 TQVILNKIR 176
T R
Sbjct: 264 TPSTPPPPR 272
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 44 DYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
DY T E SP Y+ +P SP Y+ +P SP Y P +P SP
Sbjct: 177 DY--TPESPPRRRAASPDYSPSTPPRRAASPDYSPSTPPRRAASPDYSPSTPPRRAASPD 234
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
YT +SP SP YTQ++P S YT
Sbjct: 235 YTPMSPPRRAASPDYTQMTPPRRAASPDYT 264
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 58/127 (45%), Gaps = 25/127 (19%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAY------------------TQVSPAYIPVSPAYTP- 99
SP YT VSP Y+ SP Y+ SP+Y T+ + Y P SP ++P
Sbjct: 1790 SPQYTPVSPQYSPTSPTYSPTSPSYLATQGGGSGERRSKGKAATEPATRYSPTSPNFSPT 1849
Query: 100 ------VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
SP Y+ S Y+ SP YT SP Y+ S Y+ QV P Y+ SP Y
Sbjct: 1850 SPSYSPSSPQYSPSSSKYSPTSPTYTPTSPKYSPTSPTYSPTGGPGQQVVPGYSPTSPTY 1909
Query: 154 TQVSPAY 160
+ SPAY
Sbjct: 1910 SPSSPAY 1916
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 18/110 (16%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAY------------------TQVSPAYTQVSPAYTQV 121
SP YT VSP Y P SP Y+P SP+Y T+ + Y+ SP ++
Sbjct: 1790 SPQYTPVSPQYSPTSPTYSPTSPSYLATQGGGSGERRSKGKAATEPATRYSPTSPNFSPT 1849
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
SP+Y+ S Y+ S Y+ SP YT SP Y+ SP Y+ QV+
Sbjct: 1850 SPSYSPSSPQYSPSSSKYSPTSPTYTPTSPKYSPTSPTYSPTGGPGQQVV 1899
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQV-SPAYIPVSPAYTPVSPAYTQVSPAY 111
S Y+ SP Y+ SP+Y+ SP Y+ S Y P SP YTP SP+Y+ SPAY
Sbjct: 1835 STRYSPSSPNYSPTSPSYSPASPQYSPTGSSKYSPTSPTYTPTSPSYSPASPAY 1888
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPV-SPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ SP Y+ SP+Y+ SP Y P S Y+P SP YT SP+Y+ SPAY
Sbjct: 1835 STRYSPSSPNYSPTSPSYSPASPQYSPTGSSKYSPTSPTYTPTSPSYSPASPAY 1888
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 59 SPAYTQ-----------VSPAYTQVSPA----YTQVSPAYTQVSPAYIPVSPAYTPV-SP 102
SP Y+ SP+ Q +PA Y+ SP Y+ SP+Y P SP Y+P S
Sbjct: 1806 SPQYSPTSPSYSPTSPSYSPSSPQHTPAASTRYSPSSPNYSPTSPSYSPASPQYSPTGSS 1865
Query: 103 AYTQVSPAYTQVSPAYTQVSPAY 125
Y+ SP YT SP+Y+ SPAY
Sbjct: 1866 KYSPTSPTYTPTSPSYSPASPAY 1888
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 85 QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
Q +PA S Y+P SP Y+ SP+Y+ SP Y+ S Y+ S YT SP
Sbjct: 1829 QHTPA---ASTRYSPSSPNYSPTSPSYSPASPQYSPTG------SSKYSPTSPTYTPTSP 1879
Query: 145 AYTQVSPAY 153
+Y+ SPAY
Sbjct: 1880 SYSPASPAY 1888
Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 57 TVSPAYTQVSPA----YTQVSPAYTQVSPAYTQVSPAY 90
+ SPA Q SP Y+ SP YT SP+Y+ SPAY
Sbjct: 1851 SYSPASPQYSPTGSSKYSPTSPTYTPTSPSYSPASPAY 1888
>gi|260785365|ref|XP_002587732.1| hypothetical protein BRAFLDRAFT_94635 [Branchiostoma floridae]
gi|229272884|gb|EEN43743.1| hypothetical protein BRAFLDRAFT_94635 [Branchiostoma floridae]
Length = 429
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 53/71 (74%)
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
T++ +YT+V +YT+V +YT++ L+YT++ L+YT++ +YT++ +YT++ +YT++
Sbjct: 357 TRIYLSYTRVHLSYTRVHLSYTRIYLSYTRIHLSYTRIHLSYTRIHLSYTRIYLSYTRIY 416
Query: 165 SAYTQVILNKI 175
+YT++ L+ I
Sbjct: 417 LSYTRIYLSSI 427
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
P ++ + P+ S + + +++ + + T + +YT+V +YT+V +YT++ +YT
Sbjct: 330 PPFSMLRPS----SMSRLHLHLSFVRIYLSSTRIYLSYTRVHLSYTRVHLSYTRIYLSYT 385
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
++ L+YT++ L+YT++ +YT++ +YT++ +YT++
Sbjct: 386 RIHLSYTRIHLSYTRIHLSYTRIYLSYTRIYLSYTRI 422
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 57/85 (67%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P S + + ++ ++ + T++ +YT+V +YT+V L+YT++ L+YT++ +YT++
Sbjct: 337 PSSMSRLHLHLSFVRIYLSSTRIYLSYTRVHLSYTRVHLSYTRIYLSYTRIHLSYTRIHL 396
Query: 152 AYTQVSPAYTQVSSAYTQVILNKIR 176
+YT++ +YT++ +YT++ L+ R
Sbjct: 397 SYTRIHLSYTRIYLSYTRIYLSYTR 421
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 53/78 (67%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
++ ++ + T++ +YT+V +YT+V +Y + +YT + +YT++ +YT++ +YT+
Sbjct: 348 SFVRIYLSSTRIYLSYTRVHLSYTRVHLSYTRIYLSYTRIHLSYTRIHLSYTRIHLSYTR 407
Query: 121 VSPAYTQVSLAYTQVSLA 138
+ +YT++ L+YT++ L+
Sbjct: 408 IYLSYTRIYLSYTRIYLS 425
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 43/70 (61%)
Query: 45 YLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY 104
YLS+ + V +YT+V +YT++ +YT++ +YT++ +Y + +YT + +Y
Sbjct: 353 YLSSTRIYLSYTRVHLSYTRVHLSYTRIYLSYTRIHLSYTRIHLSYTRIHLSYTRIYLSY 412
Query: 105 TQVSPAYTQV 114
T++ +YT++
Sbjct: 413 TRIYLSYTRI 422
>gi|443694802|gb|ELT95843.1| hypothetical protein CAPTEDRAFT_126680, partial [Capitella teleta]
Length = 203
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y + AY + AY + AY + AY + AY + AY + AY + AY +
Sbjct: 1 YCVLDIAYWILDIAYWILDIAYWVLDIAYWILDIAYCVLDIAYCVLEIAYCVLDIAYCVL 60
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
AY + +AY + +AY + AY + AY + AY + AY
Sbjct: 61 DIAYWILDIAYWILDIAYWVLDIAYWILDIAYCVLDIAYWILDIAY 106
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ + AY + AY + AY + AY + AY + AY + AY + AY +
Sbjct: 30 WILDIAYCVLDIAYCVLEIAYCVLDIAYCVLDIAYWILDIAYWILDIAYWVLDIAYWILD 89
Query: 116 PAYTQVSPAYTQVSLAY----TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
AY + AY + +AY + +AY + AY + AY + AY + AY
Sbjct: 90 IAYCVLDIAYWILDIAYYIAYWVLDIAYCVLDIAYCILDIAYCVLDIAYCVLDIAY 145
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 56 YTVSPAYTQVSPAYTQVSPAY----TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ + AY + AY + AY + AY + AY + AY + AY + AY
Sbjct: 86 WILDIAYCVLDIAYWILDIAYYIAYWVLDIAYCVLDIAYCILDIAYCVLDIAYCVLDIAY 145
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ AY + AY + +AY + +AY + AY + AY + AY + AY
Sbjct: 146 WVLDIAYWVLDIAYWILDIAYWVLDIAYCVLDIAYWVLDIAYCVLDIAYCVLDIAY 201
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+ AY + AY + AY + AY + AY + AY + AY + AY +
Sbjct: 3 VLDIAYWILDIAYWILDIAYWVLDIAYWILDIAYCVLDIAYCVLEIAYCVLDIAYCVLDI 62
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
AY + AY + +AY + +AY + AY + AY + AY
Sbjct: 63 AYWILDIAYWILDIAYWVLDIAYWILDIAYCVLDIAYWILDIAY 106
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ SP ++ SP + SPAY+ SP+Y Q SP+Y P SP ++P SP Y+ SP + S
Sbjct: 1600 FVTSPGFSPSSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNMSLSS 1659
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
PA++ SP Y+ S A + SP Y+ SPA++ SP
Sbjct: 1660 PAFSPTSPTYSPTSPAIGGTRQFSSPTSPKYSPASPAWSPTSP 1702
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 25/126 (19%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQV--------------SPAYIPVSPAYTPVSP 102
T SPAY+ SP+Y Q SP+Y+ SP ++ SPA+ P SP Y+P SP
Sbjct: 1615 TTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNMSLSSPAFSPTSPTYSPTSP 1674
Query: 103 AYTQV----SPAYTQVSPAYTQVSPAYTQVSLAY---TQVSLAYTQVSPAYTQVSPAYTQ 155
A SP + SPA SPA++ S T ++ + SPA SP+Y+
Sbjct: 1675 AIGGTRQFSSPTSPKYSPA----SPAWSPTSPEIYSPTSPNIHGSPTSPARGGTSPSYSP 1730
Query: 156 VSPAYT 161
SP Y
Sbjct: 1731 TSPQYN 1736
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----------- 107
SP + SP ++ SP + SPAY+ SP+Y SP+Y+P SP ++
Sbjct: 1597 SPRFV-TSPGFSPSSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNM 1655
Query: 108 ---SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA-YTQVSP 158
SPA++ SP Y+ SPA + S Y+ SPA++ SP Y+ SP
Sbjct: 1656 SLSSPAFSPTSPTYSPTSPAIGGTRQFSSPTSPKYSPASPAWSPTSPEIYSPTSP 1710
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SP ++ SP ++P SP + SPAY+ SP+Y Q SP+Y+ S ++ S Y+ SP
Sbjct: 1597 SPRFV-TSPGFSPSSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPNYSPSSPNM 1655
Query: 147 TQVSPAYTQVSPAYTQVSSA 166
+ SPA++ SP Y+ S A
Sbjct: 1656 SLSSPAFSPTSPTYSPTSPA 1675
>gi|326436837|gb|EGD82407.1| hypothetical protein PTSG_03050 [Salpingoeca sp. ATCC 50818]
Length = 406
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 50/102 (49%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
PAYT +P YT +PAYT PAY SP YT P YT PAYT P YT P YT
Sbjct: 156 PAYTTEAPVYTTEAPAYTTQPPAYTTQSPQYTTQPPQYTTQPPAYTTQPPQYTTQPPQYT 215
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
YT YT P YT PAYT P YT AYT
Sbjct: 216 TQPPQYTTQPPQYTTQPPQYTTQPPAYTTQPPQYTTQHPAYT 257
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQVSPAYTQV 114
T P YT P YT PAYT P YT PAY P P YT PAYT P YT
Sbjct: 223 TQPPQYTTQPPQYTTQPPAYTTQPPQYTTQHPAYTTRPAYPVYTTQPPAYTTQPPQYTTQ 282
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
PAYT P YT YT YT P YT P YT P YT AYT
Sbjct: 283 PPAYTTQPPQYTTQPPQYTTQPPQYTTQPPVYTTQPPVYTTQPPKYTTQPPAYT 336
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 55 VYTVSPAY---TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
YT PAY T PAYT P YT PAYT P Y P YT P YT P Y
Sbjct: 255 AYTTRPAYPVYTTQPPAYTTQPPQYTTQPPAYTTQPPQYTTQPPQYTTQPPQYTTQPPVY 314
Query: 112 TQVSPAYTQVSPAYTQVSLAYT 133
T P YT P YT AYT
Sbjct: 315 TTQPPVYTTQPPKYTTQPPAYT 336
>gi|82538919|ref|XP_723888.1| erythrocyte membrane protein [Plasmodium yoelii yoelii 17XNL]
gi|23478337|gb|EAA15453.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 1264
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------PVSPAY 104
E T V P + + T + P VS +T +P IPVS +T PV +
Sbjct: 672 ETTHMPVEPIHLSMPQTLTHIIPPQIPVSQGFTHETPTQIPVSQGFTHETPPQIPVPQGF 731
Query: 105 TQVSPA---------YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
T PA +T +PA VS +T + A VS +T +PA VS +
Sbjct: 732 THAIPAQAQIPVPQGFTHATPAQIPVSQGFTHATSAQIPVSQGFTHATPAQIPVSQGFNH 791
Query: 156 VSPAYTQVSSAYTQVI 171
+P + +T I
Sbjct: 792 ATPTQITIPQGFTHAI 807
Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQV---------SPAYIPVSPAYTPVSPAYTQVS 108
VS +T +PA VS + +P + +PA IPVS T V+ +
Sbjct: 771 VSQGFTHATPAQIPVSQGFNHATPTQITIPQGFTHAIPAPAQIPVSQGLTHVTSPQITIP 830
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+T +P VS +T + VS +T P QVS +T +P+ VS
Sbjct: 831 QGFTHATPIQMPVSQGFTHATPTQMPVSQGFTHAPPTQMQVSQGFTHATPSQIPVS 886
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 60 PAYTQ--VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
PA Q V +T +PA VS +T + A IPVS +T +PA VS + +P
Sbjct: 736 PAQAQIPVPQGFTHATPAQIPVSQGFTHATSAQIPVSQGFTHATPAQIPVSQGFNHATPT 795
Query: 118 YTQVSPAYTQVSLAYTQ--VSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +T A Q VS T V+ + +T +P VS +T
Sbjct: 796 QITIPQGFTHAIPAPAQIPVSQGLTHVTSPQITIPQGFTHATPIQMPVSQGFTH 849
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA VS T V+ + +T +P +PVS +T +P VS +T P
Sbjct: 809 APAQIPVSQGLTHVTSPQITIPQGFTHATPIQMPVSQGFTHATPTQMPVSQGFTHAPPTQ 868
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
QVS +T + + VS Q P TQ + Q + T S++
Sbjct: 869 MQVSQGFTHATPSQIPVS----QTLPPMTQTQMSLMQTQASMTPSSAS 912
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T + V P + + T + P VS + +P PVS +T +P V
Sbjct: 670 TSETTHMPVEPIHLSMPQTLTHIIPPQIPVSQGFTHETPTQIPVSQGFTHETPPQIPVPQ 729
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+T PA Q+ V +T +PA VS +T + A VS +T
Sbjct: 730 GFTHAIPAQAQIP-----VPQGFTHATPAQIPVSQGFTHATSAQIPVSQGFTH 777
>gi|213556958|gb|ACJ53770.1| RNA polymerase II [Plasmodium gallinaceum]
Length = 2200
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSP-AYTQVSPAYTQ---VSPAYTQVSPAYTQVSLA 131
Y +SP Y+ SP Y P+SP Y+P SP A SP Y+ SP ++ SPAY+ S
Sbjct: 2075 YNVMSPVYSVTSPKYSPMSPQYSPTSPVANNPGSPHYSPYSITSPKFSPTSPAYSISSPV 2134
Query: 132 YTQVSLAYTQ-VSPAYTQVSP 151
Y + ++ Q +SPAY SP
Sbjct: 2135 YDKNAVLNNQPLSPAYIIQSP 2155
>gi|326436742|gb|EGD82312.1| hypothetical protein PTSG_02979 [Salpingoeca sp. ATCC 50818]
Length = 311
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 3/149 (2%)
Query: 2 FTPDFLGLIGGTLTVEIFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPA 61
F D GT V L S ++ + R+D S+ + S
Sbjct: 136 FVADIRASHDGTCIARRSRGVARLGRRCS-GHVKCWSRRDTHCSRSSTHCSRSSARYSHK 194
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT+ S +T+ S + T+ S +T+ S + S + T S YT+ S +T+ S + T+
Sbjct: 195 YTRCSHKHTRCSRSSTRYSHKHTRCSHKHTRCSRSSTRYSHKYTRCSHKHTRCSRSSTRY 254
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
S Y + S +T+ S + T S + T+ S
Sbjct: 255 SHKYARCS--HTRCSRSSTHCSRSSTRCS 281
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T S + S + S YT+ S +T+ S + T+ S +T+ S +T+ S + T+ S
Sbjct: 175 THCSRSSTHCSRSSARYSHKYTRCSHKHTRCSRSSTRYSHKHTRCSHKHTRCSRSSTRYS 234
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSS 186
YT+ S +T+ S + T+ S Y + + SRSS
Sbjct: 235 HKYTRCSHKHTRCSRSSTRYSHKYARCSHTRCSRSSTHCSRSS 277
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
S + T S + + S YT+ S +T+ S + T+ S +T+ S +T+ S + T+ S
Sbjct: 177 CSRSSTHCSRSSARYSHKYTRCSHKHTRCSRSSTRYSHKHTRCSHKHTRCSRSSTRYSHK 236
Query: 153 YTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAY 188
YT+ S +T+ S + T+ R SRSS +
Sbjct: 237 YTRCSHKHTRCSRSSTRYSHKYARCSHTRCSRSSTH 272
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
S Y P SP Y+P SP Y+ S Y+ SP Y+ S +Y+ S +Y+ S AY+ P Y
Sbjct: 1829 STKYSPSSPNYSPTSPTYSPTSTKYSPTSPTYSPTSHSYSPTSPSYSPTSPAYSPQVPGY 1888
Query: 147 TQVSPAYTQVSPAY 160
+ SP Y+ SP Y
Sbjct: 1889 SPTSPTYSAASPTY 1902
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
S Y+ SP Y+ SP Y P S Y+P SP Y+ S +Y+ SP+Y+ SPAY+ Y
Sbjct: 1829 STKYSPSSPNYSPTSPTYSPTSTKYSPTSPTYSPTSHSYSPTSPSYSPTSPAYSPQVPGY 1888
Query: 133 TQVSLAYTQVSPAY 146
+ S Y+ SP Y
Sbjct: 1889 SPTSPTYSAASPTY 1902
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYT--------------QVSPAYIPVSPAYTPVSPAY 104
SP Y+ SP Y+ S Y+ SP Y+ SPAY P P Y+P SP Y
Sbjct: 1836 SPNYSPTSPTYSPTSTKYSPTSPTYSPTSHSYSPTSPSYSPTSPAYSPQVPGYSPTSPTY 1895
Query: 105 TQVSPAY 111
+ SP Y
Sbjct: 1896 SAASPTY 1902
Score = 43.9 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1584 SPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYSP 1624
>gi|226822904|gb|ACJ54156.1| RNA polymerase II [Plasmodium falciparum]
gi|226822906|gb|ACJ54157.1| RNA polymerase II [Plasmodium falciparum]
gi|226822908|gb|ACJ54158.1| RNA polymerase II [Plasmodium falciparum]
Length = 188
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP-AYTQ 120
Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP A
Sbjct: 33 YNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNI 92
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
SP Y+ S+ S ++ SPAY+ SP Y +
Sbjct: 93 ASPNYSPYSI----TSPKFSPTSPAYSISSPVYDK 123
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYT----PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
Y+ SP Y + Y P SP V+ Y +SP Y+ SP Y+ SP Y+ S
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
Y+ S Y+ SP Y+ SP Y+ SP ++S
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIAS 94
Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 97 YTPVSPAYTQVSPAYTQVSPA-----------YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
Y+P SP Y + Y+ SP Y +SP Y+ S Y+ S Y+ SP
Sbjct: 1 YSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPK 60
Query: 146 YTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP Y+ SP Y+ S Y+
Sbjct: 61 YSPTSPKYSPTSPKYSPTSPKYS 83
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP SP + SP ++ SP++ P SPAY+P SP + + + SP+Y+ SP +
Sbjct: 1576 SPGIGITSPRF-MASPGFSPASPSFAPTSPAYSPTSPGF---AAGASPTSPSYSPTSPGF 1631
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ S +Y+ S +++ SPA++ SP+Y+ SPA
Sbjct: 1632 SPTSPSYSPTSPSFSPTSPAFSPTSPSYSPTSPA 1665
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAY----TQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+ SP ++ SP++ SPAY+ SP + + SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1586 FMASPGFSPASPSFAPTSPAYSPTSPGFAAGASPTSPSYSPTSPGFSPTSPSYSPTSPSF 1645
Query: 112 TQVSPAYTQVSPAYTQVSLAY---TQVSLAYTQ-VSPAYTQVSPAYTQVSPA 159
+ SPA++ SP+Y+ S A T L+ T SP YT SP ++ SP
Sbjct: 1646 SPTSPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPRYTPTSPGWSPTSPG 1697
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 25/147 (17%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + Y+ SP T + S Y P SP SP + SP ++ SP++
Sbjct: 1541 SPGGARSPGGYSPTSPFSTSPTSPSYSPSSGYSPTSPGIGITSPRF-MASPGFSPASPSF 1599
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP---------------------AYTQVS 157
SPAY+ S + + + SP+Y+ SP A++ S
Sbjct: 1600 APTSPAYSPTSPGF---AAGASPTSPSYSPTSPGFSPTSPSYSPTSPSFSPTSPAFSPTS 1656
Query: 158 PAYTQVSSAYTQVILNKIRPGRESNSR 184
P+Y+ S A + P ++ R
Sbjct: 1657 PSYSPTSPALGGATGRHLSPTSPTSPR 1683
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 61 AYTQVSPA-YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
Y+ SP Y+ SPAY+ SP Y+ SPAY P SP Y+P SPAY+ SP Y+ SPAY+
Sbjct: 1531 GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSPNYSPTSPAYSPTSPNYSPTSPAYS 1590
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 68 AYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
Y+ SP Y+ SPAY+ SP Y P SPAY+P SP Y+ SPAY+ SP Y+ SPAY+
Sbjct: 1531 GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSPNYSPTSPAYSPTSPNYSPTSPAYS 1590
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 75 AYTQVSPA-YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
Y+ SP Y+ SPAY P SP Y+P SPAY+ SP Y+ SPAY+ SP Y+ S AY+
Sbjct: 1531 GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSPNYSPTSPAYSPTSPNYSPTSPAYS 1590
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 66 SPAYTQVSP-AYTQVSPAYTQVSPAYIPVSPA-YTPVSPAYTQVSPAYTQVSPAYTQVSP 123
SP + SP A + SP + Y P SP Y+P SPAY+ SP Y+ SPAY+ SP
Sbjct: 1510 SPYNSAFSPVASSPTSPGH---QGGYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSP 1566
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYT 147
Y+ S AY+ S Y+ SPAY+
Sbjct: 1567 NYSPTSPAYSPTSPNYSPTSPAYS 1590
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 80 SPAYTQVSP-AYIPVSPA----YTPVSPA-YTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
SP + SP A P SP Y+P SP Y+ SPAY+ SP Y+ SPAY+ S Y+
Sbjct: 1510 SPYNSAFSPVASSPTSPGHQGGYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSPNYS 1569
Query: 134 QVSLAYTQVSPAYTQVSPAYT 154
S AY+ SP Y+ SPAY+
Sbjct: 1570 PTSPAYSPTSPNYSPTSPAYS 1590
>gi|146198654|ref|NP_078947.3| zinc finger protein 768 [Homo sapiens]
gi|158564024|sp|Q9H5H4.2|ZN768_HUMAN RecName: Full=Zinc finger protein 768
gi|119572626|gb|EAW52241.1| hypothetical protein FLJ23436, isoform CRA_a [Homo sapiens]
gi|119572627|gb|EAW52242.1| hypothetical protein FLJ23436, isoform CRA_a [Homo sapiens]
Length = 540
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
SP Y S Y S Y S Y + SP + SS + +++LN
Sbjct: 122 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSKFQEGAEMLLN 179
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SP + P SP + P SP + SP + SP SP + S S + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA---FFHEWVWMSWYPD 203
SP Y SP Y S Y E ++S +EA F E M P+
Sbjct: 122 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSKFQEGAEMLLNPE 181
Query: 204 INPTLPIAMGVH 215
L I++GVH
Sbjct: 182 EKSPLNISVGVH 193
>gi|418549552|ref|ZP_13114593.1| type VI secretion system, partial [Burkholderia pseudomallei 1258b]
gi|385354560|gb|EIF60820.1| type VI secretion system, partial [Burkholderia pseudomallei 1258b]
Length = 104
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + VS + T S + T VS + T +S +
Sbjct: 10 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSS 69
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ VS + T S + T VSL+YT S + T S +
Sbjct: 70 WKDVSMSTTGQSESITGVSLSYTGTSNSMTGTSTS 104
>gi|157125604|ref|XP_001660710.1| hypothetical protein AaeL_AAEL010265 [Aedes aegypti]
gi|108873550|gb|EAT37775.1| AAEL010265-PA [Aedes aegypti]
Length = 434
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 16/130 (12%)
Query: 59 SPAYTQVSPAYTQVS-----PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+P+ TQ +P TQ S PA TQ +P TQ P+ I +P+ T +PA TQ P+
Sbjct: 233 TPSLTQTAPVVTQPSEILTTPALTQTAPVVTQ--PSGILTTPSLTQTAPAITQ--PSGIL 288
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS-----PAYTQVSPAYTQVSSAYT 168
+P+ TQ +PA TQ S T SL TQ +PA TQ S P+ TQ +PA TQ S T
Sbjct: 289 TTPSLTQTAPAITQPSGILTTPSL--TQTAPAITQPSGILTTPSLTQTAPAITQPSGILT 346
Query: 169 QVILNKIRPG 178
L + PG
Sbjct: 347 TPSLTQTAPG 356
>gi|221040692|dbj|BAH12023.1| unnamed protein product [Homo sapiens]
Length = 453
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 31 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 90
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
SP Y S Y S Y S Y + SP + SS + +++LN
Sbjct: 91 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSKFQEGAEMLLN 148
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SP + P SP + P SP + SP + SP SP + S S + SP Y
Sbjct: 31 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 90
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA---FFHEWVWMSWYPD 203
SP Y SP Y S Y E ++S +EA F E M P+
Sbjct: 91 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSKFQEGAEMLLNPE 150
Query: 204 INPTLPIAMGVH 215
L I++GVH
Sbjct: 151 EKSPLNISVGVH 162
>gi|418395486|ref|ZP_12969445.1| type VI secretion system, partial [Burkholderia pseudomallei 354a]
gi|418555276|ref|ZP_13119986.1| type VI secretion system, partial [Burkholderia pseudomallei 354e]
gi|385368843|gb|EIF74257.1| type VI secretion system, partial [Burkholderia pseudomallei 354e]
gi|385373936|gb|EIF78910.1| type VI secretion system, partial [Burkholderia pseudomallei 354a]
Length = 106
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + VS + T S + T VS + T +S +
Sbjct: 11 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSS 70
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ VS + T S + T VSL+YT S + T S +
Sbjct: 71 WKDVSMSTTGQSESITGVSLSYTGTSNSMTGTSTS 105
>gi|418535392|ref|ZP_13101156.1| type VI secretion system, partial [Burkholderia pseudomallei 1026a]
gi|418543025|ref|ZP_13108409.1| type VI secretion system, partial [Burkholderia pseudomallei 1258a]
gi|385353823|gb|EIF60135.1| type VI secretion system, partial [Burkholderia pseudomallei 1258a]
gi|385355519|gb|EIF61699.1| type VI secretion system, partial [Burkholderia pseudomallei 1026a]
Length = 102
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + VS + T S + T VS + T +S +
Sbjct: 9 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSS 68
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
+ VS + T S + T VSL+YT S + T S
Sbjct: 69 WKDVSMSTTGQSESITGVSLSYTGTSNSMTGTST 102
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP YTP SP YT SP YT SP Y+ SP Y+ S Y+ S YT SP YT
Sbjct: 1844 YTPSSPQYTPSSPQYTPSSPQYTPSSPQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPS 1903
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP YT SP YT S YT
Sbjct: 1904 SPQYTPSSPQYTPSSPQYT 1922
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/79 (53%), Positives = 45/79 (56%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
YT SP Y P SP YTP SP YT SP Y+ SP Y+ SP Y+ S YT S YT
Sbjct: 1844 YTPSSPQYTPSSPQYTPSSPQYTPSSPQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPS 1903
Query: 143 SPAYTQVSPAYTQVSPAYT 161
SP YT SP YT SP YT
Sbjct: 1904 SPQYTPSSPQYTPSSPQYT 1922
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 31/79 (39%), Gaps = 28/79 (35%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAY----------------------------IPVSPAYTPV 100
YT SP YT SP YT SP Y P SP YTP
Sbjct: 1844 YTPSSPQYTPSSPQYTPSSPQYTPSSPQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPS 1903
Query: 101 SPAYTQVSPAYTQVSPAYT 119
SP YT SP YT SP YT
Sbjct: 1904 SPQYTPSSPQYTPSSPQYT 1922
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 31/79 (39%), Gaps = 28/79 (35%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPV----------------------------SPAYTQV 107
YT SP YT SP Y P SP YTP SP YT
Sbjct: 1844 YTPSSPQYTPSSPQYTPSSPQYTPSSPQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPS 1903
Query: 108 SPAYTQVSPAYTQVSPAYT 126
SP YT SP YT SP YT
Sbjct: 1904 SPQYTPSSPQYTPSSPQYT 1922
>gi|10440123|dbj|BAB15652.1| unnamed protein product [Homo sapiens]
gi|127799579|gb|AAH92403.2| Zinc finger protein 768 [Homo sapiens]
Length = 520
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 55/157 (35%), Gaps = 25/157 (15%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 42 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 101
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP Y S Y S Y S Y + SP + SS
Sbjct: 102 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSK------------ 149
Query: 179 RESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAMGVH 215
F E M P+ L I++GVH
Sbjct: 150 -------------FQEGAEMLLNPEEKSPLNISVGVH 173
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 35/142 (24%)
Query: 58 VSPAYT---QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV------S 108
VSP YT SP S +YT VSP Y+ +P Y P+SP Y+P +P +Q+ S
Sbjct: 1571 VSPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSSQIQSYSSAS 1630
Query: 109 PAYTQVSPAYTQ--------------------------VSPAYTQVSLAYTQVSLAYTQV 142
P Y +SP ++ SP Y+ S +Y+ SL+Y+
Sbjct: 1631 PIYNPISPNSSRYNPSSPSFSPTSTSPSYSPASASYSPTSPFYSPTSPSYSPASLSYSPT 1690
Query: 143 SPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP+Y+ S +Y+ S
Sbjct: 1691 SPFYSPTSPSYSPASLSYSPTS 1712
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 68/184 (36%)
Query: 53 ATVYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQV------SPAYIPVSPA--------- 96
+T YT VSP Y+ +P YT +SP Y+ +P +Q+ SP Y P+SP
Sbjct: 1589 STSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSSQIQSYSSASPIYNPISPNSSRYNPSSP 1648
Query: 97 ------------------------YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
Y+P SP+Y+ S +Y+ SP Y+ SP+Y+ SL+Y
Sbjct: 1649 SFSPTSTSPSYSPASASYSPTSPFYSPTSPSYSPASLSYSPTSPFYSPTSPSYSPASLSY 1708
Query: 133 TQVS----------------------------LAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ S L Y+ SP Y+ SP Y+ SP Y+ S
Sbjct: 1709 SPTSPFYSPTSPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYSPTSPTYSPTSPNYSPTS 1768
Query: 165 SAYT 168
+Y
Sbjct: 1769 PSYN 1772
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 42/136 (30%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP----------------------- 95
SP+Y+ S +Y+ SP Y+ SP+Y+ S +Y P SP
Sbjct: 1677 SPSYSPASLSYSPTSPFYSPTSPSYSPASLSYSPTSPFYSPTSPSYSPSSPSYSPTSPTY 1736
Query: 96 -----AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT---------- 140
Y+P SP Y+ SP Y+ SP Y+ SP+Y +L+YT+ + + T
Sbjct: 1737 SPTSLGYSPTSPGYSPTSPTYSPTSPNYSPTSPSY---NLSYTEYNSSNTYSPTRPRITL 1793
Query: 141 -QVSPAYTQVSPAYTQ 155
+P Y+ SP Y+
Sbjct: 1794 DSQAPDYSPTSPTYSP 1809
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 91 IPVSPAYTPVSPAYT---QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYT 147
IP S Y VSP YT SP S +YT VSP Y+ + YT +S Y+ +P +
Sbjct: 1562 IPRSVRYMAVSPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSS 1621
Query: 148 QVSPAYTQVSPAYTQVS 164
Q+ +Y+ SP Y +S
Sbjct: 1622 QIQ-SYSSASPIYNPIS 1637
>gi|195401791|ref|XP_002059494.1| GJ14795 [Drosophila virilis]
gi|194147201|gb|EDW62916.1| GJ14795 [Drosophila virilis]
Length = 431
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
ST A+ V PA ++V P ++V PA ++V PA ++V PA V P + V PA ++
Sbjct: 253 STSRALASTPKVQPATSRVQPGTSRVQPATSRVQPATSRVQPATSRVQPGTSRVQPATSR 312
Query: 107 VSPAYTQVSPAYTQVSPAYTQ----VSLAYTQVSLAYTQVSPAYTQV 149
V PA ++V PA ++V PA ++ S+A S A +Q+ + TQV
Sbjct: 313 VQPATSRVQPATSRVQPATSRTQPATSIAQFSSSTAQSQLD-SKTQV 358
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 85 QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
+V PA V P + V PA ++V PA ++V PA ++V P ++V A ++V A ++V P
Sbjct: 263 KVQPATSRVQPGTSRVQPATSRVQPATSRVQPATSRVQPGTSRVQPATSRVQPATSRVQP 322
Query: 145 AYTQVSPAYTQVSPAYT--QVSSAYTQVILN 173
A ++V PA ++ PA + Q SS+ Q L+
Sbjct: 323 ATSRVQPATSRTQPATSIAQFSSSTAQSQLD 353
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP-AYTPVSPAYT 105
ST + +A P +V P ++ + ++ V P A T + A T
Sbjct: 202 STPKSDAVTSKAQPVTARVQPGISRARRGSARAQAGTSRELAGTTKVQPTASTSRALAST 261
Query: 106 -QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+V PA ++V P ++V PA ++V A ++V A ++V P ++V PA ++V PA ++V
Sbjct: 262 PKVQPATSRVQPGTSRVQPATSRVQPATSRVQPATSRVQPGTSRVQPATSRVQPATSRVQ 321
Query: 165 SAYTQV 170
A ++V
Sbjct: 322 PATSRV 327
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 57/133 (42%), Gaps = 33/133 (24%)
Query: 61 AYTQVSPA---YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP- 116
Y+ SP Y+ SP SPAY SP + P SPAYTP SP Y+ SPAY+ S
Sbjct: 1574 GYSPTSPGMAGYSPTSPGQGMTSPAYQVTSPQFSPASPAYTPTSPTYSPTSPAYSGGSKI 1633
Query: 117 --------------------------AYTQVSPAY---TQVSLAYTQVSLAYTQVSPAYT 147
Y+ SPA+ + S Y+ S Y+ SPAY+
Sbjct: 1634 SPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPAHAPGSATSPKYSPTSPTYSPTSPAYS 1693
Query: 148 QVSPAYTQVSPAY 160
SP Y+ SP Y
Sbjct: 1694 PTSPTYSPTSPKY 1706
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 59/147 (40%), Gaps = 46/147 (31%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---------------------- 96
SP SPAY SP ++ SPAYT SP Y P SPA
Sbjct: 1589 SPGQGMTSPAYQVTSPQFSPASPAYTPTSPTYSPTSPAYSGGSKISPTSPSYSPTSPSYS 1648
Query: 97 ------------YTPVSPAY---TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+P SPA+ + SP Y+ SP Y+ SPAY+ S Y+ S Y
Sbjct: 1649 PTSPSYSPTSPNYSPTSPAHAPGSATSPKYSPTSPTYSPTSPAYSPTSPTYSPTSPKYGS 1708
Query: 142 ---------VSPAYTQVSPAYTQVSPA 159
SP Y+ SP Y+ SPA
Sbjct: 1709 GVGASGASPTSPTYSPTSPVYSPTSPA 1735
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 49/109 (44%), Gaps = 25/109 (22%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI---------PVSPAYTPVSPAYTQVSP 109
SP Y+ SP Y+ SPAY+ SP Y+ SP Y P SP Y+P SP Y+ SP
Sbjct: 1675 SPKYSPTSPTYSPTSPAYSPTSPTYSPTSPKYGSGVGASGASPTSPTYSPTSPVYSPTSP 1734
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
A SP SP Q + SP Y+ SP Y+ SP
Sbjct: 1735 AQNGYSP----TSPGQKQ------------SPTSPQYSPTSPQYSPNSP 1767
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 57/144 (39%), Gaps = 45/144 (31%)
Query: 59 SPAYTQVSP---------------------------AYTQVSPAY---TQVSPAYTQVSP 88
SPAY+ S Y+ SPA+ + SP Y+ SP
Sbjct: 1624 SPAYSGGSKISPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPAHAPGSATSPKYSPTSP 1683
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQ---------VSPAYTQVSPAYTQVSLAYTQVSLAY 139
Y P SPAY+P SP Y+ SP Y SP Y+ SP Y+ S A Y
Sbjct: 1684 TYSPTSPAYSPTSPTYSPTSPKYGSGVGASGASPTSPTYSPTSPVYSPTSPAQN----GY 1739
Query: 140 TQVSPAYTQ--VSPAYTQVSPAYT 161
+ SP Q SP Y+ SP Y+
Sbjct: 1740 SPTSPGQKQSPTSPQYSPTSPQYS 1763
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 79 VSPAYTQVSPAYIPVSP----AYTPVSPAYTQVSPAYTQVSPA---YTQVSPAYTQVSLA 131
+SP +SP Y P SP ++P SPAY Y+ SP Y+ SP S A
Sbjct: 1544 MSPYRGGMSPGYAPTSPFNSGGFSPTSPAY-----GYSPTSPGMAGYSPTSPGQGMTSPA 1598
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y S Q SPA PAYT SP Y+ S AY+
Sbjct: 1599 YQVTS---PQFSPAS----PAYTPTSPTYSPTSPAYS 1628
>gi|428211954|ref|YP_007085098.1| multidrug resistance efflux pump [Oscillatoria acuminata PCC 6304]
gi|428000335|gb|AFY81178.1| multidrug resistance efflux pump [Oscillatoria acuminata PCC 6304]
Length = 644
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A + ++ +V A +V A +Q+ A V A + VS A V A +QV+ +
Sbjct: 305 AESGLNAVQNEVKAAEQEVQAANSQIIAAQKEVEAAKSQVSAALQDVEVANSQVTAGEQE 364
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++ A +QV++A++Q+S A +QV QV Q+ A ++SA TQV
Sbjct: 365 IAVAQSQVTVAHSQISAAESQVKAVAGQVQSTQAQIYSADAGIASAQTQV 414
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 41 DLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV 100
DL+ Y T+ + ++ +V A +V A +Q+ A +V A VS A V
Sbjct: 294 DLDVY--TNRRQNAESGLNAVQNEVKAAEQEVQAANSQIIAAQKEVEAAKSQVSAALQDV 351
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
A +QV+ +++ A +QV+ A++Q+S A +QV QV Q+ A ++ A
Sbjct: 352 EVANSQVTAGEQEIAVAQSQVTVAHSQISAAESQVKAVAGQVQSTQAQIYSADAGIASAQ 411
Query: 161 TQVSSA 166
TQV+ A
Sbjct: 412 TQVTRA 417
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 7/107 (6%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA----YTQVSP 116
AY+ SP Y+ SP+Y+ SP Y+ SP+Y P S Y+P S AY+ SP Y+Q SP
Sbjct: 1726 AYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSP-SHAYSPSSPRMMSPYSQTSP 1784
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV--SPAYTQVSPAYT 161
Y+ SP Y+ S +Y Q S +Y+ SP T SP Y+ SP Y+
Sbjct: 1785 NYSPTSPTYSPTSPSYAQPSPSYSPTSPHTTSGGPSPDYSPTSPNYS 1831
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT----QVSLAYTQVSP 144
AY P SP Y+P SP+Y+ SP Y+ SP+Y S Y+ S AY+ ++ Y+Q SP
Sbjct: 1726 AYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSP-SHAYSPSSPRMMSPYSQTSP 1784
Query: 145 AYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ SP+Y Q
Sbjct: 1785 NYSPTSPTYSPTSPSYAQ 1802
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 41/122 (33%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAY------------------------TQVSPAYIPVS 94
SP Y+ SP+Y+ SP Y+ SP+Y +Q SP Y P S
Sbjct: 1731 SPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRMMSPYSQTSPNYSPTS 1790
Query: 95 PAYTPVSPAYTQVSPAYTQV---------SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
P Y+P SP+Y Q SP+Y+ SP Y+ SP Y+ S +Y+ +P
Sbjct: 1791 PTYSPTSPSYAQPSPSYSPTSPHTTSGGPSPDYSPTSPNYSP--------SASYSPTAPG 1842
Query: 146 YT 147
Y+
Sbjct: 1843 YS 1844
>gi|326437087|gb|EGD82657.1| hypothetical protein PTSG_03315 [Salpingoeca sp. ATCC 50818]
Length = 398
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 52 EATVYTVSPA-YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
EA VYT P YT +PAYT P YT PAYT PAY P YT PAYT P
Sbjct: 203 EAPVYTTQPPQYTTEAPAYTTQPPQYTTQPPAYT-TRPAY----PVYTTQPPAYTTQPPQ 257
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
YT P YT P YT YT YT P YT P YT P YT AYT
Sbjct: 258 YTTQPPQYTTQPPQYTTQPPVYTTQPPKYTTKPPVYTTQPPVYTTQPPKYTTQPPAYT 315
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 81 PAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT 140
PAYT +PAY P YT P YT PAYT +P YT P YT + AYT YT
Sbjct: 170 PAYTTEAPAYTTQPPQYTTQPPQYTTQPPAYTTEAPVYTTQPPQYTTEAPAYTTQPPQYT 229
Query: 141 QVSPAYTQVS--PAYTQVSPAYTQVSSAYT 168
PAYT P YT PAYT YT
Sbjct: 230 TQPPAYTTRPAYPVYTTQPPAYTTQPPQYT 259
>gi|242073150|ref|XP_002446511.1| hypothetical protein SORBIDRAFT_06g017200 [Sorghum bicolor]
gi|241937694|gb|EES10839.1| hypothetical protein SORBIDRAFT_06g017200 [Sorghum bicolor]
Length = 367
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 29/193 (15%)
Query: 10 IGGTLTVEIFLLVF---LLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVS 66
+ G VE+ +VF + L++ R DY D ++ + SP Y+ +
Sbjct: 35 VRGRSFVELEGIVFDSERFCYRRTSSLLDSPPRSGSPDYTPGSLDCSSQRSGSPDYSPAT 94
Query: 67 P------AYTQVSPAYTQVSPAYTQV---------SPAYIPVSPAYTPVSPAYTQV-SPA 110
P + SP Y+ SP YT + SP Y P +P YTP++P+ + SP
Sbjct: 95 PDPATPSSQRSGSPVYSPASPEYTPLLKPSSRRFGSPDYSPATPEYTPLTPSSQRSGSPV 154
Query: 111 YTQVSPAYTQV---------SPAYTQVSLAYTQVSLAYTQV-SPAYTQVSPAYTQVSPAY 160
Y+ SP YT + SP Y+ S YT ++ + + SP Y+ SP YT ++P
Sbjct: 155 YSPASPEYTPLLTPSSRRFGSPDYSPASPEYTPLTPSSQRSGSPVYSPGSPEYTPLTPPK 214
Query: 161 TQVSSAYTQVILN 173
S AYT N
Sbjct: 215 RSGSPAYTPAAAN 227
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 38 KRKDLEDYLSTDEDEATV---YTVSPAYTQVSPAYTQV---------SPAYTQVSPAYTQ 85
+R DY D AT + SP Y+ SP YT + SP Y+ +P YT
Sbjct: 83 QRSGSPDYSPATPDPATPSSQRSGSPVYSPASPEYTPLLKPSSRRFGSPDYSPATPEYTP 142
Query: 86 V--------SPAYIPVSPAYTPV---------SPAYTQVSPAYTQVSPAYTQV-SPAYTQ 127
+ SP Y P SP YTP+ SP Y+ SP YT ++P+ + SP Y+
Sbjct: 143 LTPSSQRSGSPVYSPASPEYTPLLTPSSRRFGSPDYSPASPEYTPLTPSSQRSGSPVYSP 202
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYT 154
S YT ++ SPAYT + YT
Sbjct: 203 GSPEYTPLTPPKRSGSPAYTPAAANYT 229
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1746
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 30/139 (21%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ-VSPAYIPVSPAYTPVSP------------ 102
Y+VSP ++ VSPA+T SPAY+ SP++ SP+Y P SP Y+P SP
Sbjct: 1602 YSVSPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYS 1661
Query: 103 -----------AYTQVSPAY--TQVSP--AYTQVSPAYTQVSLAYTQVSLAY--TQVSPA 145
Y+ SP Y +VSP + SP Y+ S ++ S + SP
Sbjct: 1662 PTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNNTSPK 1721
Query: 146 YTQVSPAYTQVSPAYTQVS 164
Y+ SP+Y+ SP ++ S
Sbjct: 1722 YSPTSPSYSPTSPNFSPTS 1740
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQ-VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ-VSP 116
SP ++ SP Y+ SP SP Y+ VSP + PVSPA+TP SPAY+ SP++ SP
Sbjct: 1577 SPQFSPSSPGYSPTSPMMGGGASPGYS-VSPRFSPVSPAFTPTSPAYSPTSPSFVSPTSP 1635
Query: 117 AYTQVSPAYTQVS 129
+Y+ SP Y+ S
Sbjct: 1636 SYSPTSPNYSPTS 1648
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 59 SPAYTQVSPAYTQVSPAY--TQVSPAYTQVSPAYIPVSPAYTPVSP 102
SP Y+ SP ++ SP + SP Y+ SP+Y P SP ++P SP
Sbjct: 1696 SPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNFSPTSP 1741
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 66 SPAYTQVSPAYTQVSPAY--TQVSPAYIPVSPAYTPVSPAYTQVSP 109
SP Y+ SP ++ SP + SP Y P SP+Y+P SP ++ SP
Sbjct: 1696 SPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTSPNFSPTSP 1741
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y+ SP+Y P SP Y+P SP
Sbjct: 1541 GYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPG 1583
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
Y+ SP Y+ SP Y P SP Y+P SP+Y+ SP Y+ SP
Sbjct: 1541 GYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPG 1583
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
Y+ SP Y P SP Y+P SP Y+ SP+Y+ SP Y+ SP
Sbjct: 1541 GYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPG 1583
>gi|254177214|ref|ZP_04883870.1| Rhs element Vgr protein [Burkholderia mallei ATCC 10399]
gi|160698254|gb|EDP88224.1| Rhs element Vgr protein [Burkholderia mallei ATCC 10399]
Length = 734
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T VS ++T VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 541 VSASFTGVSTSFTGVSTSFTGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 600
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T +S ++T VS++ T VSL+YT S
Sbjct: 601 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTS 633
>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
Length = 1569
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
++ +SP SP Y+ + +Q Y P S Y SP Y S Y +P +
Sbjct: 1422 GFSPMSPLSAGFSPDYSGYNSIQSQT---YSPTSAGYNIRSPVYNATSQVYNPRTPNFAP 1478
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
VSP Y ++ Y S + S + SP+YT +SP+ + S Y
Sbjct: 1479 VSPTYNPMTSMYAPTSFDTSLSSDHHKPTSPSYTPLSPSNSPASPRY 1525
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
S Y+ S Y SP Y S Y +P + PVSP Y P++ Y S + S +
Sbjct: 1445 SQTYSPTSAGYNIRSPVYNATSQVYNPRTPNFAPVSPTYNPMTSMYAPTSFDTSLSSDHH 1504
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+YT +S + + S Y Y PA + SPA
Sbjct: 1505 KPTSPSYTPLSPSNSPASPRY------YGSYEPASSSYSPA 1539
>gi|326427528|gb|EGD73098.1| hypothetical protein PTSG_04811 [Salpingoeca sp. ATCC 50818]
Length = 1317
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 72/145 (49%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E E + VS + TQ+ +VS + T + +VS + + VS + TQ+
Sbjct: 233 ELEQQLNEVSESRTQLEQQLNEVSESKTHLEQQLNEVSESKTHLEQQLNEVSESKTQLEQ 292
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
++VS + TQ+ ++VS + TQ+ ++VS + TQ+ +VS + TQ+ ++
Sbjct: 293 QLSEVSESRTQLEQQLSEVSESRTQLEQQLSEVSESRTQLEQQLNEVSESRTQLEQQLSE 352
Query: 170 VILNKIRPGRESNSRSSAYEAFFHE 194
V ++ +E+N+R + E +E
Sbjct: 353 VSESQEGATQEANTRIAELEQQLNE 377
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
+T E A + + +VS + TQ+ +VS + T + VS + T + +
Sbjct: 223 ATQEANARIAELEQQLNEVSESRTQLEQQLNEVSESKTHLEQQLNEVSESKTHLEQQLNE 282
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
VS + TQ+ ++VS + TQ+ ++VS + TQ+ ++VS + TQ+ +VS +
Sbjct: 283 VSESKTQLEQQLSEVSESRTQLEQQLSEVSESRTQLEQQLSEVSESRTQLEQQLNEVSES 342
Query: 167 YTQV 170
TQ+
Sbjct: 343 RTQL 346
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 39 RKDLEDYLS--TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA 96
R LE LS ++ E + ++ + S + TQ+ ++VS + +
Sbjct: 83 RTQLEQQLSEVSESQEGATQEANTRIAELEQQLNEASESRTQLEQQLSEVSESRTQLEQQ 142
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
+ VS + T + ++VS + TQ+ ++VS + TQ+ ++ S + TQ+ +V
Sbjct: 143 LSEVSESKTHLEQQLSEVSESRTQLEQQLSEVSESRTQLVQQLSEASESKTQLEQQLNEV 202
Query: 157 SPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHE 194
S + TQ+ ++V ++ +E+N+R + E +E
Sbjct: 203 SESRTQLEQQLSEVSESQEGATQEANARIAELEQQLNE 240
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 39 RKDLEDYLS--TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA 96
R LE LS ++ E + ++ +VS + TQ+ +VS + +
Sbjct: 206 RTQLEQQLSEVSESQEGATQEANARIAELEQQLNEVSESRTQLEQQLNEVSESKTHLEQQ 265
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
VS + T + +VS + TQ+ ++VS + TQ+ ++VS + TQ+ ++V
Sbjct: 266 LNEVSESKTHLEQQLNEVSESKTQLEQQLSEVSESRTQLEQQLSEVSESRTQLEQQLSEV 325
Query: 157 SPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHE 194
S + TQ+ +V ++ + ++ + S + E E
Sbjct: 326 SESRTQLEQQLNEVSESRTQLEQQLSEVSESQEGATQE 363
Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVS--------PAYT 98
+T E A + + +VS + TQ+ ++VS + TQ+ VS A T
Sbjct: 47 ATQEANARIAELEQQLNEVSESKTQLEQQLSEVSESRTQLEQQLSEVSESQEGATQEANT 106
Query: 99 PVSPAYTQV---SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
++ Q+ S + TQ+ ++VS + TQ+ ++VS + T + ++VS + TQ
Sbjct: 107 RIAELEQQLNEASESRTQLEQQLSEVSESRTQLEQQLSEVSESKTHLEQQLSEVSESRTQ 166
Query: 156 VSPAYTQVSSAYTQVILNKIRPGRESNSR 184
+ ++VS + TQ++ ++ ES ++
Sbjct: 167 LEQQLSEVSESRTQLV-QQLSEASESKTQ 194
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 22/82 (26%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA----------------------YIPVSPA 96
SP Y+ SP+Y+ SP Y+ SP +T + + Y P S
Sbjct: 1794 SPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSPHSTK 1853
Query: 97 YTPVSPAYTQVSPAYTQVSPAY 118
Y+P SP YT SP+Y+ SPAY
Sbjct: 1854 YSPTSPTYTPTSPSYSPASPAY 1875
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTP-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
SP Y+ SP+Y+ SP Y P SP +TP S Y+ SP Y+ SP+Y+ SP Y+ S
Sbjct: 1794 SPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSPHSTK 1853
Query: 132 YTQVSLAYTQVSPAYTQVSPAY 153
Y+ S YT SP+Y+ SPAY
Sbjct: 1854 YSPTSPTYTPTSPSYSPASPAY 1875
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP+Y P SP YTPV+P+Y+ SP Y+ SP Y+ SPAY+Q + Y+ S Y+
Sbjct: 1688 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1746
Query: 142 V---------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1747 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1781
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1693 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1751
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1752 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1811
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1812 ISIYSPGSTKYSPTSPTYTPTARN 1835
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1717 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1776
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP ++ + Y+ Y+ SP Y+ Y+ S Y+ SP YT +
Sbjct: 1777 TSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNISIYSPGSTKYSPTSPTYTPTARN 1835
Query: 153 YTQVSPAYT 161
Y+ SP Y+
Sbjct: 1836 YSPTSPMYS 1844
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP+Y P SP YTPV+P+Y+ SP Y+ SP Y+ SPAY+Q + Y+ S Y+
Sbjct: 1688 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1746
Query: 142 V---------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1747 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1781
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1693 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1751
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1752 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1811
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1812 ISIYSPGSTKYSPTSPTYTPTARN 1835
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1717 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1776
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP ++ + Y+ Y+ SP Y+ Y+ S Y+ SP YT +
Sbjct: 1777 TSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNISIYSPGSTKYSPTSPTYTPTARN 1835
Query: 153 YTQVSPAYT 161
Y+ SP Y+
Sbjct: 1836 YSPTSPMYS 1844
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP+Y P SP YTPV+P+Y+ SP Y+ SP Y+ SPAY+Q + Y+ S Y+
Sbjct: 1688 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1746
Query: 142 V---------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1747 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1781
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1693 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1751
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1752 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1811
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1812 ISIYSPGSTKYSPTSPTYTPTARN 1835
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1717 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1776
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP ++ + Y+ Y+ SP Y+ Y+ S Y+ SP YT +
Sbjct: 1777 TSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNISIYSPGSTKYSPTSPTYTPTARN 1835
Query: 153 YTQVSPAYT 161
Y+ SP Y+
Sbjct: 1836 YSPTSPMYS 1844
>gi|326437014|gb|EGD82584.1| hypothetical protein PTSG_03236 [Salpingoeca sp. ATCC 50818]
Length = 372
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT--PVSPAYTQVSPAYTQV 114
T PAYT PAYT P YT +PAYT P Y PAYT P P YT P YT
Sbjct: 177 TQPPAYTTKPPAYTTQPPQYTTEAPAYTTQPPQYTTQPPAYTTRPAYPRYTTQPPQYTTQ 236
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P YT P YT YT YT P YT P YT P YT AYT
Sbjct: 237 PPQYT-TQPQYTTQPPVYTTQPPKYTTKPPVYTTQPPVYTTQPPKYTTQPPAYT 289
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PAYT +PAYT P YT P YT PAY PAYT P YT +PAYT P YT
Sbjct: 152 PAYTTEAPAYTTQPPQYTTQPPQYTTQPPAYTTKPPAYTTQPPQYTTEAPAYTTQPPQYT 211
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
PAYT AY + YT P YT P YT P YT YT
Sbjct: 212 TQPPAYT-TRPAYPR----YTTQPPQYTTQPPQYT-TQPQYTTQPPVYT 254
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS--PAYTQV 114
T P YT PAYT PAYT P YT +PAY P YT PAYT P YT
Sbjct: 170 TQPPQYTTQPPAYTTKPPAYTTQPPQYTTEAPAYTTQPPQYTTQPPAYTTRPAYPRYTTQ 229
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P YT P YT YT YT P YT P YT P YT YT
Sbjct: 230 PPQYTTQPPQYT-TQPQYTTQPPVYTTQPPKYTTKPPVYTTQPPVYTTQPPKYT 282
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQ------VS 108
T PAYT P YT +PAYT P YT PAY P P YT P YT
Sbjct: 184 TKPPAYTTQPPQYTTEAPAYTTQPPQYTTQPPAYTTRPAYPRYTTQPPQYTTQPPQYTTQ 243
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P YT P YT P YT YT YT P YT PAYT T+ ++AY
Sbjct: 244 PQYTTQPPVYTTQPPKYTTKPPVYTTQPPVYTTQPPKYTTQPPAYTTT----TKCNNAY 298
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP+Y P SP YTPV+P+Y+ SP Y+ SP Y+ SPAY+Q + Y+ S Y+
Sbjct: 1688 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1746
Query: 142 V---------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1747 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1781
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1693 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1751
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1752 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1811
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1812 ISIYSPGSTKYSPTSPTYTPTARN 1835
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1717 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1776
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP ++ + Y+ Y+ SP Y+ Y+ S Y+ SP YT +
Sbjct: 1777 TSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNISIYSPGSTKYSPTSPTYTPTARN 1835
Query: 153 YTQVSPAYT 161
Y+ SP Y+
Sbjct: 1836 YSPTSPMYS 1844
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
YT SP SP Y+P SP Y+ SP Y SP Y +P + Q S
Sbjct: 1567 YTASSPGG--ASPNYSPSSPNYSPTSPMYAATSPRYASATPNFNQQS 1611
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP+Y P SP YTPV+P+Y+ SP Y+ SP Y+ SPAY+Q + Y+ S Y+
Sbjct: 1688 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1746
Query: 142 V---------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1747 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1781
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1693 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1751
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1752 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1811
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1812 ISIYSPGSTKYSPTSPTYTPTARN 1835
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1717 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1776
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP ++ + Y+ Y+ SP Y+ Y+ S Y+ SP YT +
Sbjct: 1777 TSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNISIYSPGSTKYSPTSPTYTPTARN 1835
Query: 153 YTQVSPAYT 161
Y+ SP Y+
Sbjct: 1836 YSPTSPKYS 1844
>gi|297265364|ref|XP_001118038.2| PREDICTED: hypothetical protein LOC721842 [Macaca mulatta]
Length = 665
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 39/111 (35%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V +VSP SP VSP P SP + VSP SP VSP
Sbjct: 530 CVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLS 589
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
VSP SP S VS SP SP VSP VS
Sbjct: 590 VSPCVLSTSPCVLSTSPCVLSVSPCVLSTSPCVLSTSPCVLSVSPCELSVS 640
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 38/111 (34%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V + SP VSP SP VSP P + SP VSP SP
Sbjct: 523 CVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLS 582
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
VSP VSP S S VSP SP SP VS
Sbjct: 583 VSPCVLSVSPCVLSTSPCVLSTSPCVLSVSPCVLSTSPCVLSTSPCVLSVS 633
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 38/111 (34%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V +VSP P SP VSP SP + VSP VSP SP
Sbjct: 544 CVLSVSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSVSPCVLSTSPCVLS 603
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP VSP S S VSP VSP SP S
Sbjct: 604 TSPCVLSVSPCVLSTSPCVLSTSPCVLSVSPCELSVSPCVLSASPCVLSAS 654
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 38/111 (34%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V + SP VSP P SP VSP + SP VSP VSP
Sbjct: 537 CVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSVSPCVLS 596
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP SP VS S SP VSP VSP S
Sbjct: 597 TSPCVLSTSPCVLSVSPCVLSTSPCVLSTSPCVLSVSPCELSVSPCVLSAS 647
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 38/111 (34%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V ++SP SP SP VSP SP + VSP P SP
Sbjct: 509 CVLSISPCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLS 568
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
VSP SP VS VS SP SP VSP S
Sbjct: 569 VSPCVLSTSPCVLSVSPCVLSVSPCVLSTSPCVLSTSPCVLSVSPCVLSTS 619
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 41/119 (34%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
+ T++ + SP VSP VSP SP VSP + SP SP
Sbjct: 431 MCTEQSLPCALSASPCVLSVSPCELSVSPCVLSTSPCVLSVSPCVLSASPCVLSASPCVL 490
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
VSP P SP +S S SP VSP SP VS
Sbjct: 491 SVSPCVLSSLPCALSASPCVLSISPCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSVS 549
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 37/106 (34%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V +VSP VSP SP VSP SP + SP VSP P
Sbjct: 446 CVLSVSPCELSVSPCVLSTSPCVLSVSPCVLSASPCVLSASPCVLSVSPCVLSSLPCALS 505
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP +SP S S VSP SP VSP
Sbjct: 506 ASPCVLSISPCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSVSPC 551
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 38/117 (32%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V + SP SP VSP SP VSP + P SP VSP
Sbjct: 516 CVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSVSPCVLS 575
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP VSP VS S SP VSP SP S V
Sbjct: 576 TSPCVLSVSPCVLSVSPCVLSTSPCVLSTSPCVLSVSPCVLSTSPCVLSTSPCVLSV 632
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 37/109 (33%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ SP +SP SP SP VSP + SP VSP P S
Sbjct: 504 LSASPCVLSISPCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSAS 563
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
P VSP S VS VSP SP SP VS
Sbjct: 564 PCVLSVSPCVLSTSPCVLSVSPCVLSVSPCVLSTSPCVLSTSPCVLSVS 612
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 36/106 (33%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V + P SP VSP SP VSP + VSP SP SP
Sbjct: 551 CVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSVSPCVLSTSPCVLSTSPCVLS 610
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
VSP SP S VS VSP SP SP
Sbjct: 611 VSPCVLSTSPCVLSTSPCVLSVSPCELSVSPCVLSASPCVLSASPC 656
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 37/111 (33%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V + SP VSP P SP +SP + SP SP VSP
Sbjct: 481 CVLSASPCVLSVSPCVLSSLPCALSASPCVLSISPCVLSTSPCVLSASPCVLSVSPCVLS 540
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP VSP S VSP SP VSP VS
Sbjct: 541 TSPCVLSVSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSVS 591
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 37/111 (33%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V +VSP P SP +SP SP + SP VSP SP
Sbjct: 488 CVLSVSPCVLSSLPCALSASPCVLSISPCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLS 547
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
VSP P S VS SP VSP VSP S
Sbjct: 548 VSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSVSPCVLSTS 598
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 35/111 (31%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P SP +SP SP SP + VSP SP VSP P
Sbjct: 501 PCALSASPCVLSISPCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVL 560
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP VS S VSP VSP SP S V
Sbjct: 561 SASPCVLSVSPCVLSTSPCVLSVSPCVLSVSPCVLSTSPCVLSTSPCVLSV 611
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 37/117 (31%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V +VSP SP SP VSP P + SP +SP SP
Sbjct: 467 CVLSVSPCVLSASPCVLSASPCVLSVSPCVLSSLPCALSASPCVLSISPCVLSTSPCVLS 526
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP VSP S VS P SP VSP S V
Sbjct: 527 ASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSV 583
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 37/117 (31%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V + SP SP VSP P SP + +SP SP SP
Sbjct: 474 CVLSASPCVLSASPCVLSVSPCVLSSLPCALSASPCVLSISPCVLSTSPCVLSASPCVLS 533
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
VSP SP VS SP VSP SP VS V
Sbjct: 534 VSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSV 590
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 36/111 (32%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V + SP VSP SP SP VSP + P SP +SP
Sbjct: 460 CVLSTSPCVLSVSPCVLSASPCVLSASPCVLSVSPCVLSSLPCALSASPCVLSISPCVLS 519
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP SP VS S VSP P SP VS
Sbjct: 520 TSPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSVS 570
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 35/111 (31%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P SP VSP VSP SP + VSP SP SP VSP
Sbjct: 438 PCALSASPCVLSVSPCELSVSPCVLSTSPCVLSVSPCVLSASPCVLSASPCVLSVSPCVL 497
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
P S +S SP SP VSP S V
Sbjct: 498 SSLPCALSASPCVLSISPCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSV 548
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 36/115 (31%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+VSP SP VSP SP SP + VSP P SP +S
Sbjct: 455 LSVSPCVLSTSPCVLSVSPCVLSASPCVLSASPCVLSVSPCVLSSLPCALSASPCVLSIS 514
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
P SP S VS SP VSP P S V
Sbjct: 515 PCVLSTSPCVLSASPCVLSVSPCVLSTSPCVLSVSPCVLSTLPCVLSASPCVLSV 569
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 47/166 (28%), Gaps = 33/166 (19%)
Query: 32 ILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI 91
+ E+ + T++ + SP VSP VSP SP VSP +
Sbjct: 328 VCTERLTVCTEHLTMCTEQSLPCALSASPCVLSVSPCELSVSPCVLSTSPCVLSVSPCVL 387
Query: 92 PVSPAYTPVSPA----YT-----------------------------QVSPAYTQVSPAY 118
SP SP YT Q P SP
Sbjct: 388 SASPCVLSASPCRLAVYTEHLTVCTEHLTVCTECLTVCTEHLTMCTEQSLPCALSASPCV 447
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
VSP VS S VSP SP SP VS
Sbjct: 448 LSVSPCELSVSPCVLSTSPCVLSVSPCVLSASPCVLSASPCVLSVS 493
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y+ SP Y P SP+Y+P SP
Sbjct: 1556 GYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPG 1598
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y+ SP Y P SP Y+P SP+Y+ SP
Sbjct: 1556 GYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPG 1598
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
Y+ SP Y+ SP Y P SP Y+P SP Y+ SP+Y+ SP
Sbjct: 1556 GYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPG 1598
Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
Y+ SP Y P SP Y+P SP Y+ SP Y+ SP+Y+ SP
Sbjct: 1556 GYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPG 1598
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 21/127 (16%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT------ 112
SP Y+ SP Y+ SP Y+ SP Y+ SP+Y P SP Y+P SP+Y+ SP+Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYAPTSPSY 1620
Query: 113 ---------------QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
SP+Y+ SP+Y+ S +Y+ S AY+ SP+Y SPAY+ S
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYAPTSPAYSPTS 1680
Query: 158 PAYTQVS 164
P+Y+ S
Sbjct: 1681 PSYSPTS 1687
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
AY P SP+Y P SPAY+ SP+Y+ SP
Sbjct: 1661 AYSPTSPSYAPTSPAYSPTSPSYSPTSPG 1689
Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
AY+P SP+Y SPAY+ SP+Y+ SP
Sbjct: 1661 AYSPTSPSYAPTSPAYSPTSPSYSPTSPG 1689
>gi|297283827|ref|XP_001100901.2| PREDICTED: zinc finger protein 768-like [Macaca mulatta]
Length = 533
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
SP Y S +Y S Y +P SP S + + + +++LN
Sbjct: 122 EPQSPGYEPRSPSYESESSRYESQNPELKTQSPELEAQSSKFQEGA----EMLLN 172
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 3/127 (2%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP + P SP + SP + SP + SP S + S SP + SP
Sbjct: 60 PQSPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSP 119
Query: 152 AYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA---FFHEWVWMSWYPDINPTL 208
Y SP Y S +Y E ++S EA F E M P+ L
Sbjct: 120 RYEPQSPGYEPRSPSYESESSRYESQNPELKTQSPELEAQSSKFQEGAEMLLNPEEKSPL 179
Query: 209 PIAMGVH 215
I++GVH
Sbjct: 180 NISVGVH 186
>gi|260782257|ref|XP_002586206.1| hypothetical protein BRAFLDRAFT_142505 [Branchiostoma floridae]
gi|229271302|gb|EEN42217.1| hypothetical protein BRAFLDRAFT_142505 [Branchiostoma floridae]
Length = 134
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P QV+P QV+P +V+P +V+P V+P V+P QV+P QV+P
Sbjct: 3 VTPEAPQVTPEAPQVTPEAPEVTPEAPEVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPE 62
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
QV+P QV+ QV+ QV+P QV+P QV+P QV+ QV
Sbjct: 63 APQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQV 115
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P QV+P +V+P +V+P QV+P V+P V+P QV+P QV+P
Sbjct: 10 VTPEAPQVTPEAPEVTPEAPEVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPE 69
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
QV+P QV+ QV+ QV+P QV+P QV+P QV+ QV
Sbjct: 70 APQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQV 122
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P +V+P +V+P QV+P QV+P V+P V+P QV+P QV+P
Sbjct: 17 VTPEAPEVTPEAPEVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPE 76
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
QV+P QV+ QV+ QV+P QV+P QV+P QV+ QV
Sbjct: 77 APQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQV 129
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P QV+P QV+P QV+P QV+P +P TP +P QV+P QV+P
Sbjct: 31 VTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPE----APQVTPEAP---QVTPEAPQVTPE 83
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
QV+P QV+ QV+ QV+P QV+P QV+P QV+
Sbjct: 84 APQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTPEAPQVTP 131
>gi|444731708|gb|ELW72057.1| Zinc finger protein 768 [Tupaia chinensis]
Length = 295
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 65/114 (57%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 113 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 172
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + VI
Sbjct: 173 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVI 226
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 120 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 179
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
+ V+P + V+ + V+ + V+P + V+P + V+P + V + V L
Sbjct: 180 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVIHYFHPVTL 234
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 29 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 88
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 89 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 141
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 36 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 95
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 96 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 148
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 43 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 102
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 103 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 155
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 50 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 109
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 110 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 162
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 57 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 116
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 117 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 169
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 64 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 123
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 124 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 176
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 71 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 130
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 131 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 183
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 78 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 137
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 138 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 190
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 85 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 144
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 145 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 197
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 92 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 151
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 152 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 204
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 99 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 158
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 159 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 211
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 106 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 165
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 166 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 218
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 22 VTPYFLPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 81
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 82 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 134
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 15 VTPYFLPVTPYFLPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 74
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+P + V+ + V+ + V+P + V+P + V+P + V+ + V
Sbjct: 75 FHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 127
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + V+P + V+P + V+P + V+P + PV+P + PV+P + V+P + V+P
Sbjct: 155 VTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPY 214
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+ V+P + V + V+L + V+P + V+
Sbjct: 215 FHPVTPYFHPVIHYFHPVTLYFLPVTPYFLPVT 247
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%)
Query: 71 QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
V+P + V+P + V+P + PV+P + PV+P + V+P + V+P + V+P + V+
Sbjct: 14 PVTPYFLPVTPYFLPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTP 73
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+ + V+P + V+P + V+P + V+ + V
Sbjct: 74 YFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPVTPYFHPV 113
>gi|444725796|gb|ELW66350.1| Zinc finger protein 768 [Tupaia chinensis]
Length = 468
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 29/60 (48%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP Y SP Y SP Y SP Y P SP Y P SP Y SP + SP Y
Sbjct: 33 SPEFEPRSPRYEPQSPGYEPKSPGYESRSPGYEPKSPGYEPKSPRYESGSPEFESQSPGY 92
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 37/90 (41%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP + SP Y SP Y SP Y SP Y P SP Y SP Y SP + SP Y
Sbjct: 33 SPEFEPRSPRYEPQSPGYEPKSPGYESRSPGYEPKSPGYEPKSPRYESGSPEFESQSPGY 92
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
+ + + SP + S + +
Sbjct: 93 ESQNTGFEPQNSELKTQSPEFEAQSSKFQE 122
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 25/136 (18%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP + SP Y P SP Y P SP Y SP Y SP Y SP Y S + S Y
Sbjct: 33 SPEFEPRSPRYEPQSPGYEPKSPGYESRSPGYEPKSPGYEPKSPRYESGSPEFESQSPGY 92
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHEWVWMS 199
+ + + SP + SS F E M
Sbjct: 93 ESQNTGFEPQNSELKTQSPEFEAQSSK-------------------------FQEGAEML 127
Query: 200 WYPDINPTLPIAMGVH 215
P+ L I +GVH
Sbjct: 128 MNPEEKNPLSIPLGVH 143
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA----YTQVSP 116
AY+ SP Y+ SP+Y+ SP Y+ SP+Y P S Y+P S AY+ SP Y+Q SP
Sbjct: 1724 AYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSP-SHAYSPSSPRMMSPYSQTSP 1782
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQV---------SPAYTQVSPAYT 154
Y+ SP Y+ S +Y Q S +Y+ SP Y+ SP Y+
Sbjct: 1783 NYSPTSPTYSPTSPSYAQPSPSYSPTSPHTSSGGPSPDYSPTSPNYS 1829
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT----QVSLAYTQVSP 144
AY P SP Y+P SP+Y+ SP Y+ SP+Y S Y+ S AY+ ++ Y+Q SP
Sbjct: 1724 AYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSP-SHAYSPSSPRMMSPYSQTSP 1782
Query: 145 AYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ SP+Y Q
Sbjct: 1783 NYSPTSPTYSPTSPSYAQ 1800
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 41/122 (33%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAY------------------------TQVSPAYIPVS 94
SP Y+ SP+Y+ SP Y+ SP+Y +Q SP Y P S
Sbjct: 1729 SPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRMMSPYSQTSPNYSPTS 1788
Query: 95 PAYTPVSPAYTQVSPAYTQV---------SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
P Y+P SP+Y Q SP+Y+ SP Y+ SP Y+ S +Y+ +P
Sbjct: 1789 PTYSPTSPSYAQPSPSYSPTSPHTSSGGPSPDYSPTSPNYSP--------SASYSPTAPG 1840
Query: 146 YT 147
Y+
Sbjct: 1841 YS 1842
>gi|154294181|ref|XP_001547533.1| hypothetical protein BC1G_13981 [Botryotinia fuckeliana B05.10]
Length = 1146
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 44 DYLSTDED-EATVYTVSP-AYT-QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV 100
D +S DE E ++++ +P +T Q+ PA Q+SP Q+SP Q+SP +SP +
Sbjct: 939 DIISDDEHFENSIHSSTPITFTHQLPPAAPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQL 998
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPA 124
SP Q SP QVSP Q SP
Sbjct: 999 SPGPPQSSPGLPQVSPGLPQSSPG 1022
Score = 45.8 bits (107), Expect = 0.011, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
TP++ + Q+ PA Q+SP Q+SP Q+S Q+S Q+SP Q SP QVS
Sbjct: 955 TPITFTH-QLPPAAPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQSSPGLPQVS 1013
Query: 158 PAYTQVS 164
P Q S
Sbjct: 1014 PGLPQSS 1020
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 30/58 (51%)
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
PA Q+SP Q+SP Q+SP Q+S Q+S Q SP QVSP Q SP
Sbjct: 965 PAAPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQSSPGLPQVSPGLPQSSPG 1022
Score = 43.1 bits (100), Expect = 0.075, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 29/58 (50%)
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
PA +SP Q+SP Q+SP Q+SP Q+S Q S QVSP Q SP
Sbjct: 965 PAAPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQSSPGLPQVSPGLPQSSPG 1022
Score = 43.1 bits (100), Expect = 0.081, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 78 QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
Q+ PA Q+SP +SP +SP Q+SP Q+SP Q SP QVS Q S
Sbjct: 962 QLPPAAPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQSSPGLPQVSPGLPQSS 1020
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 85 QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
Q+ PA +SP +SP Q+SP Q+SP Q+SP Q S QVS Q SP
Sbjct: 962 QLPPAAPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQSSPGLPQVSPGLPQSSP 1021
Query: 145 A 145
Sbjct: 1022 G 1022
Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Q+ PA Q+SP Q+S Q+S Q+SP Q+SP Q SP QVS Q
Sbjct: 962 QLPPAAPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQLSPGPPQSSPGLPQVSPGLPQ 1018
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ S Y+ SP Y P SP Y+P SP Y+ P Y+ SP Y
Sbjct: 1834 SPNYSPTSPTYSPTSPKYSPSSSKYSPTSPTYTPTSPNYSPSSPTYSPNVPGYSPTSPTY 1893
Query: 119 TQVSPAY 125
+ SPAY
Sbjct: 1894 SPTSPAY 1900
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSPAYTQVSPA 117
SP YT SP Y+ SP Y+ SP+Y+ SP + P S Y+P SP Y+ SP Y+ SP
Sbjct: 1791 SPQYTPASPQYSPTSPTYSPTSPSYSPSSPQHTPGASTRYSPTSPNYSPTSPTYSPTSPK 1850
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Y+ S Y+ S YT S Y+ SP Y+ P Y+ SP Y+ S AY
Sbjct: 1851 YSPSSSKYSPTSPTYTPTSPNYSPSSPTYSPNVPGYSPTSPTYSPTSPAY 1900
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP-VSPAYTQVSPAYTQVSPAYTQVSPA 124
SP YT SP Y+ SP Y+ SP+Y P SP +TP S Y+ SP Y+ SP Y+ SP
Sbjct: 1791 SPQYTPASPQYSPTSPTYSPTSPSYSPSSPQHTPGASTRYSPTSPNYSPTSPTYSPTSPK 1850
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ S Y+ S YT SP Y+ SP Y+ P Y+ S Y+
Sbjct: 1851 YSPSSSKYSPTSPTYTPTSPNYSPSSPTYSPNVPGYSPTSPTYS 1894
Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 22/38 (57%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
YT SP Y+ SP Y+ P Y+ SP Y P SPAY P
Sbjct: 1865 YTPTSPNYSPSSPTYSPNVPGYSPTSPTYSPTSPAYEP 1902
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP 92
T SP Y+ SP Y+ P Y+ SP Y+ SPAY P
Sbjct: 1864 TYTPTSPNYSPSSPTYSPNVPGYSPTSPTYSPTSPAYEP 1902
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 53.9 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 22/82 (26%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA----------------------YIPVSPA 96
SP Y+ SP+Y+ SP Y+ SP +T + + Y P S
Sbjct: 1799 SPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSPHSTK 1858
Query: 97 YTPVSPAYTQVSPAYTQVSPAY 118
Y+P SP YT SP+Y+ SPAY
Sbjct: 1859 YSPTSPTYTPTSPSYSPASPAY 1880
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPV-SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
SP Y+ SP+Y+ SP Y P SP +TP S Y+ SP Y+ SP+Y+ SP Y+ S
Sbjct: 1799 SPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSPHSTK 1858
Query: 132 YTQVSLAYTQVSPAYTQVSPAY 153
Y+ S YT SP+Y+ SPAY
Sbjct: 1859 YSPTSPTYTPTSPSYSPASPAY 1880
>gi|83716389|ref|YP_440087.1| Rhs element Vgr protein [Burkholderia thailandensis E264]
gi|257140717|ref|ZP_05588979.1| Rhs element Vgr protein [Burkholderia thailandensis E264]
gi|83650214|gb|ABC34278.1| Rhs element Vgr protein [Burkholderia thailandensis E264]
Length = 762
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY-------- 104
A+ VS ++T VS ++T VS ++T V+ +T VS +++ V ++T +S +
Sbjct: 557 ASFTGVSTSFTGVSTSFTGVSTSFTGVTTGFTGVSTSFVGVDTSFTGISTGFVGVSTSIT 616
Query: 105 ------TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
T VS + T +S ++T VS + T S + T VSL+YT S +
Sbjct: 617 GSKNSVTGVSNSMTGISSSWTDVSMSTTGQSQSITGVSLSYTGTSNS 663
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 30/140 (21%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA--------------- 103
SP Y+ SP+Y+ SP Y+ SP+Y+ SP+Y VSP YTP SP
Sbjct: 1737 SPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYTPTSPQYSPTSPTYSPTSPSY 1796
Query: 104 --------------YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y+ SP Y+ S +Y+ SP Y+ S Y+ S YT SP Y+
Sbjct: 1797 SPSSPSHTPGASTRYSPTSPKYSPTSLSYSPASPQYSPSSSKYSPTSPTYTPTSPDYSAS 1856
Query: 150 SPAYTQVS-PAYTQVSSAYT 168
SP Y+ P+Y+ S Y+
Sbjct: 1857 SPTYSPTGPPSYSPTSPTYS 1876
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSPAYTQVS 115
+VSP YT SP Y+ SP Y+ SP+Y+ SP++ P S Y+P SP Y+ S +Y+ S
Sbjct: 1770 SVSPQYTPTSPQYSPTSPTYSPTSPSYSPSSPSHTPGASTRYSPTSPKYSPTSLSYSPAS 1829
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS-PAYTQVSPAYTQVSSAY 167
P Y+ S Y+ S YT S Y+ SP Y+ P+Y+ SP Y+ S Y
Sbjct: 1830 PQYSPSSSKYSPTSPTYTPTSPDYSASSPTYSPTGPPSYSPTSPTYSPTSPEY 1882
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 54 TVYTVSPAYTQ---VSPAYTQVSPAYTQVSPAYTQVSPAYIPVS-PAYTPVSPAYTQVSP 109
T + SPA Q S Y+ SP YT SP Y+ SP Y P P+Y+P SP Y+ SP
Sbjct: 1821 TSLSYSPASPQYSPSSSKYSPTSPTYTPTSPDYSASSPTYSPTGPPSYSPTSPTYSPTSP 1880
Query: 110 AY 111
Y
Sbjct: 1881 EY 1882
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 30/136 (22%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ-VSPAYIPVSPAYTPVSP------------ 102
Y VSP ++ VSPA+T SPAY+ SP++ SP+Y P SP Y+P SP
Sbjct: 1598 YAVSPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYS 1657
Query: 103 -----------AYTQVSPAY--TQVSP--AYTQVSPAYTQVSLAYTQVSLAY--TQVSPA 145
Y+ SP Y +VSP + SP Y+ S ++ S + SP
Sbjct: 1658 PTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNSTSPK 1717
Query: 146 YTQVSPAYTQVSPAYT 161
Y+ SP+Y+ SP ++
Sbjct: 1718 YSPTSPSYSPTSPNFS 1733
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 22/85 (25%)
Query: 75 AYTQVSPAYTQ-VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
Y+ SP SP Y VSP ++PVSPA+T SPAY+ SP++ VSP
Sbjct: 1582 GYSPTSPMMGGGASPGY-AVSPRFSPVSPAFTPTSPAYSPTSPSF--VSP---------- 1628
Query: 134 QVSLAYTQVSPAYTQVSPAYTQVSP 158
SP+Y+ SP Y+ SP
Sbjct: 1629 --------TSPSYSPTSPNYSPTSP 1645
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV----SPAY 111
Y+ S Y+ SP SP + SP ++ SP++ P SPAY+P SP Y Q SP+Y
Sbjct: 1533 YSPSSGYSPTSPGMGITSPRF-MTSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1591
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SP ++ SP+Y+ S +++ S A++ SP+Y+ SPA V+ +
Sbjct: 1592 SPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGVTGRH 1640
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 39/157 (24%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTP------------ 99
+ SP ++ SP++ SPAY+ SP Y Q SP+Y P SP ++P
Sbjct: 1553 FMTSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1612
Query: 100 ---------VSPAYTQVSPAYTQV-----------SPAYTQVSPAYTQVS-LAYTQVS-- 136
SP+Y+ SPA V SP YT SP ++ S AY+ S
Sbjct: 1613 SPASPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSPDAYSPTSPN 1672
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
A + SP ++ + P Y+ SP Y SA ++ L
Sbjct: 1673 FAGSPTSPGWSLLPPGYSPTSPTYNPNISAPVKLTLG 1709
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 60 PAYTQVSPAYTQVSPA--YTQVSPAYTQ-VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
P + SPA + SP Y+ SP T SP Y P S Y+P SP SP + SP
Sbjct: 1501 PGFGGFSPAGAR-SPGGGYSPTSPFNTSPTSPGYSP-SSGYSPTSPGMGITSPRF-MTSP 1557
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
++ SP++ S AY+ S Y Q A + SP+Y+ SP +
Sbjct: 1558 GFSPASPSFAPTSPAYSPTSPGYGQ---AQSPTSPSYSPTSPGF 1598
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 59 SPAYTQVSPAYTQV-----------SPAYTQVSPAYTQVSP-AYIPVSP--AYTPVSPAY 104
SP+Y+ SPA V SP YT SP ++ SP AY P SP A +P SP +
Sbjct: 1623 SPSYSPTSPALGGVTGRHLSPTSPTSPKYTPTSPGWSPTSPDAYSPTSPNFAGSPTSPGW 1682
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
+ + P Y+ SP Y A +++L + V
Sbjct: 1683 SLLPPGYSPTSPTYNPNISAPVKLTLGLSDV 1713
>gi|114145465|ref|NP_001041444.1| uncharacterized protein LOC689840 [Rattus norvegicus]
gi|45478124|gb|AAS66233.1| LRRGT00142 [Rattus norvegicus]
gi|149020623|gb|EDL78428.1| rCG65852 [Rattus norvegicus]
Length = 323
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 44/140 (31%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P Q P Q+ P Q P Q+ P P + P Q P Q+ P
Sbjct: 163 IDPKAVQRDPRAVQIDPKAVQRDPRAVQIDPKAGQTDPRAVQIDPKAVQTDPRAVQIDPK 222
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
Q P Q+ Q Q+ P Q P Q+ P Q + +
Sbjct: 223 AVQTDPRAVQIDPKAVQTDPRAVQIDPKALQTDPRAAQLGPKQMQAPKLLHKATAISVCV 282
Query: 178 GRESNSRSSAYEAFFHEWVW 197
E+NS E+ +W
Sbjct: 283 NLETNSTGFLAESLQESAIW 302
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
++ + TV Y+ SP+Y+ SP Y+ SP+Y P SP Y+P SP+Y+ SP
Sbjct: 1575 QSIILTVESKLLTDFSKYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSP 1632
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 42/152 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP----------------------- 95
SP+Y+ SP Y+ SP+Y+ SP Y+ SP+Y P SP
Sbjct: 1596 SPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPSYSPTSPRY 1655
Query: 96 -------------------AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
Y+P SP Y+ SP+Y+ SP+Y+ SP+Y+ S +Y+ S
Sbjct: 1656 SPTSPSYSPTSPSYSPTSPKYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1715
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
+Y+ SP Y+ SP+Y+ SP Y+ S +Y+
Sbjct: 1716 PSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYS 1747
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 33 LIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP 88
+I + K L D+ + SP Y+ SP+Y+ SP Y+ SP+Y+ SP
Sbjct: 1577 IILTVESKLLTDFSKYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSP 1632
>gi|255076855|ref|XP_002502093.1| predicted protein [Micromonas sp. RCC299]
gi|226517358|gb|ACO63351.1| predicted protein [Micromonas sp. RCC299]
Length = 62
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SPA + SPA + SPA + SPA SPA SPA + SPA + SP + SPA
Sbjct: 2 SPAKEERSPAKKERSPAKEERSPAKKERSPAKEERSPAKEERSPAKKERSPGKEERSPAK 61
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 32/60 (53%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA + SPA + SPA + SPA + SPA SPA SPA + SP + SPA
Sbjct: 2 SPAKEERSPAKKERSPAKEERSPAKKERSPAKEERSPAKEERSPAKKERSPGKEERSPAK 61
>gi|417841854|ref|ZP_12487952.1| putative target SNARE coiled-coil domain-containing protein
[Haemophilus haemolyticus M19501]
gi|341948228|gb|EGT74859.1| putative target SNARE coiled-coil domain-containing protein
[Haemophilus haemolyticus M19501]
Length = 528
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V QV+ +TQV +TQV+ + T V +TQV +TQV+
Sbjct: 296 VEAKIGQVNNQFTQVDNKFTQVNNRLDNTDNKLGQIDNQLTQVDSKFTQVDNKFTQVNNR 355
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
Q+ +TQV+ +TQV+ Q+ +T V++ + L R
Sbjct: 356 LDNTDNKLGQIDNQFTQVNNNFTQVNNRLDGTETKLGQIDNQFTHVNTRLNRTDLRISRV 415
Query: 178 G 178
G
Sbjct: 416 G 416
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1705 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1763
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1764 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1823
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1824 ISIYSPGSTKYSPTSPTYTPTARN 1847
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 37/143 (25%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1729 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1788
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1789 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNISIYSPGSTKYSPTSPTYTPTARNY 1848
Query: 140 TQVSPAYTQVSPA-YTQVSPAYT 161
+ SP Y+ +P+ Y+ SPAY+
Sbjct: 1849 SPTSPMYSPTAPSHYSPTSPAYS 1871
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1700 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1758
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1759 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1793
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
YT SP SP Y+P SP Y+ SP Y SP Y +P + Q S
Sbjct: 1579 YTASSPGG--ASPNYSPSSPNYSPTSPMYAATSPRYASATPNFNQQS 1623
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1705 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1763
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1764 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1823
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1824 ISIYSPGSTKYSPTSPTYTPTARN 1847
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 37/143 (25%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1729 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1788
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1789 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNISIYSPGSTKYSPTSPTYTPTARNY 1848
Query: 140 TQVSPAYTQVSPA-YTQVSPAYT 161
+ SP Y+ +P+ Y+ SPAY+
Sbjct: 1849 SPTSPMYSPTAPSHYSPTSPAYS 1871
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1700 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1758
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1759 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1793
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 54/90 (60%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
Y SP T SP Y P SP+Y+P SP Y+ SP Y+ SP Y+ SP+Y+ S +Y+
Sbjct: 1581 YAPTSPNMTPTSPMYSPASPSYSPTSPNYSPTSPNYSPTSPNYSHTSPSYSPTSPSYSPT 1640
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
S +Y+ SP+Y+ SP Y+ SP Y+ S+
Sbjct: 1641 SPSYSPTSPSYSPTSPVYSPTSPNYSPASA 1670
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y SP T SP Y+ SP+Y+ SP Y P SP Y+P SP Y+ SP+Y+ SP+Y+
Sbjct: 1581 YAPTSPNMTPTSPMYSPASPSYSPTSPNYSPTSPNYSPTSPNYSHTSPSYSPTSPSYSPT 1640
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
SP+Y+ S +Y+ S Y+ SP Y+ S
Sbjct: 1641 SPSYSPTSPSYSPTSPVYSPTSPNYSPAS 1669
Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y SP T SP Y+ SP+Y P SP Y+P SP Y+ SP Y+ SP+Y+ SP+Y+
Sbjct: 1581 YAPTSPNMTPTSPMYSPASPSYSPTSPNYSPTSPNYSPTSPNYSHTSPSYSPTSPSYSPT 1640
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
S +Y+ S +Y+ SP Y+ SP Y+ S
Sbjct: 1641 SPSYSPTSPSYSPTSPVYSPTSPNYSPAS 1669
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT 98
SP T SP Y+ SP+Y+ SP Y+ SP Y P SP Y+
Sbjct: 1585 SPNMTPTSPMYSPASPSYSPTSPNYSPTSPNYSPTSPNYS 1624
>gi|443706935|gb|ELU02769.1| hypothetical protein CAPTEDRAFT_228442 [Capitella teleta]
Length = 559
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P + ++P + QV+P Q+ P Q+SP + ++P ++P Q++P Q++P
Sbjct: 190 NPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGT 249
Query: 119 TQVSPAYTQVS 129
Q++P Q++
Sbjct: 250 MQINPGTMQMN 260
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++P + QV+P Q+ P Q+SP Q++P + ++P ++P Q++P Q++P
Sbjct: 196 LNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGTMQINPG 255
Query: 118 YTQVSPA 124
Q++P
Sbjct: 256 TMQMNPG 262
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
P +P+ P +P + ++P + QV+P Q+ P Q+S Q++ Q++P
Sbjct: 176 GPQLVPMDQRTMPRNPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGT 235
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQV 170
Q++P Q++P Q++ Q+
Sbjct: 236 MQMNPGTMQMNPGTMQINPGTMQM 259
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+P +P + ++P + QV+P Q+ P Q+SP Q++ Q++ Q++P Q++
Sbjct: 187 MPRNPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMN 246
Query: 151 PAYTQVSPAYTQVS 164
P Q++P Q++
Sbjct: 247 PGTMQINPGTMQMN 260
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
+P + ++P + QV+P Q+ P + +SP ++P Q++P Q++P Q++P
Sbjct: 190 NPNFIHLNPGFVQVNPGAMQMYPGTMQMSPGTMQMNPGTMQMNPGTMQMNPGTMQMNPGT 249
Query: 126 TQVSLAYTQVS 136
Q++ Q++
Sbjct: 250 MQINPGTMQMN 260
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 56 YTVSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP + SP Y+ SP + SP + SP + P SPA+ P SPAY+ SP Y Q
Sbjct: 1570 FNTSPTSPRYSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPAFAPTSPAYSPTSPGYQQ 1628
Query: 114 --VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ SP ++ S +Y+ S +++ SPA++ SP+Y+ SPA
Sbjct: 1629 SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1676
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 21/126 (16%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ--VSPAYTQ 113
Y+ S Y+ SP + SP + SP ++ SPA+ P SPAY+P SP Y Q SP+Y+
Sbjct: 1579 YSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPAFAPTSPAYSPTSPGYQQSPTSPSYSP 1637
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA------------------YTQ 155
SP ++ SP+Y+ S +++ S A++ SP+Y+ SPA YT
Sbjct: 1638 TSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTP 1697
Query: 156 VSPAYT 161
SP ++
Sbjct: 1698 TSPGWS 1703
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 43/146 (29%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPA----------------- 96
+ SP ++ SPA+ SPAY+ SP Y Q SP+Y P SP
Sbjct: 1599 FMSSPGFSPASPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSP 1658
Query: 97 -----------YTPVSPAY-----------TQVSPAYTQVSPAYTQVSPA-YTQVSLAYT 133
Y+P SPA + SP YT SP ++ SP Y+ S ++
Sbjct: 1659 ASPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS 1718
Query: 134 QVSLA-YTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ SP + SP
Sbjct: 1719 GSPTSPGGPTSPGYSPTSPTFNPTSP 1744
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+++P T VSP+Y+ SP YT SP SP Y P SP Y+P SP Y SP Y +P
Sbjct: 1501 SMTPPMTPVSPSYSPTSPNYTASSPG--GASPNYSPSSPNYSPTSPLYAAASPRYASTTP 1558
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVS 143
+ S Y+ + Y+ S Y+ S
Sbjct: 1559 NFNPQSTGYSPSASGYSPTSPVYSPTS 1585
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 62/144 (43%), Gaps = 30/144 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT +P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1646 SPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSY 1704
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSPAYTQV 149
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP Y+
Sbjct: 1705 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1764
Query: 150 SPAYTQVSPAYTQVSSAYTQVILN 173
Y+ S Y+ S YT N
Sbjct: 1765 MSIYSPSSTKYSPTSPTYTPTARN 1788
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 79 VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
++P T VSP+Y P SP YT SP SP Y+ SP Y+ SP Y S Y +
Sbjct: 1502 MTPPMTPVSPSYSPTSPNYTASSPG--GASPNYSPSSPNYSPTSPLYAAASPRYASTTPN 1559
Query: 139 YTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+ S Y+ + Y+ SP Y+ S+
Sbjct: 1560 FNPQSTGYSPSASGYSPTSPVYSPTSN 1586
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 33/143 (23%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV---- 114
SP Y+ SP Y+ SP Y SP Y +P + P S Y+P + Y+ SP Y+
Sbjct: 1529 SPNYSPSSPNYSPTSPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFP 1588
Query: 115 -SPAYTQVSPAYTQVSLAYTQVS----------------------------LAYTQVSPA 145
SP++ AY+ S Y+ SP+
Sbjct: 1589 SSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPS 1648
Query: 146 YTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT +P+Y+ S Y+
Sbjct: 1649 YSPTSPNYTPATPSYSPTSPNYS 1671
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1670 YSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1729
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP ++ + Y+ Y+ SP Y+ Y+ S Y+ SP YT +
Sbjct: 1730 TSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARN 1788
Query: 153 YTQVSPAYT 161
Y+ S Y+
Sbjct: 1789 YSPTSLMYS 1797
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT +P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1641 CYSPTSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSP 1699
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1700 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1734
>gi|23464771|ref|NP_695374.1| hypothetical protein BL0155 [Bifidobacterium longum NCC2705]
gi|23325345|gb|AAN24010.1| large transmembrane protein possibly involved in transport
[Bifidobacterium longum NCC2705]
Length = 1263
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 345 QKARRQQIVSSAQRKLDDAKDEAN-EQLDEAQKQIDDNWAELEANKTTLQDSRTELENNR 403
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ Q++LA Q+ A T+++
Sbjct: 404 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLTLARKQLDAAQTELT 463
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 464 ANRTKIEQGITQIDQGVAQI 483
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 54/124 (43%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 384 ELEANKTTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 443
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Q++ A Q+ A T+++ T++ TQ+ Q+ + + A ++
Sbjct: 444 GKAQLTLARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQANNLLAQLDPN 503
Query: 170 VILN 173
+ LN
Sbjct: 504 IDLN 507
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA---YTQVSPAYTQVSPAY 118
Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP+Y
Sbjct: 1861 YSPTSPTYSPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPSY 1920
Query: 119 TQVSP 123
+ SP
Sbjct: 1921 SPTSP 1925
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA---YTPVSPAYTQVSPAYTQVS 115
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP+Y+ S
Sbjct: 1865 SPTYSPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPSYSPTS 1924
Query: 116 P 116
P
Sbjct: 1925 P 1925
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP+Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1830 SPKYSPTSPTYSPASPSYSPSSPKYSPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKY 1889
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ S + Y+ SP Y+ SP+Y+ SP
Sbjct: 1890 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPSYSPTSP 1925
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 24/99 (24%)
Query: 90 YIPVSPAYTPVSP---------------------AYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1826 YTPTSPKYSPTSPTYSPASPSYSPSSPKYSPTSPKYSPTSPTYSPTSPKYSPTSPTYSPT 1885
Query: 129 SLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVS 164
S Y+ S Y+ SP Y+ SP Y+ SP+Y+ S
Sbjct: 1886 SPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPSYSPTS 1924
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 53.1 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 60/92 (65%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPAY+ SP+Y+ SP+Y+ SP+Y+
Sbjct: 1581 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1640
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
S +Y+ S +Y+ SPAY+ SPAY+ SPA
Sbjct: 1641 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1672
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 59/92 (64%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPAY+ SP+Y+ SP+Y+ S +Y+
Sbjct: 1581 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1640
Query: 135 VSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
S +Y+ SP+Y+ SPAY+ SPAY+ S A
Sbjct: 1641 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1672
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 60/92 (65%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SP+Y+ SP+Y+
Sbjct: 1581 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1640
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP+Y+ S +Y+ S AY+ SPAY+ SPA
Sbjct: 1641 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1672
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 35/80 (43%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-----------------------------------Y 83
SP Y+ SP Y+ SP Y+ SPA Y
Sbjct: 1593 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
Query: 84 TQVSPAYIPVSPAYTPVSPA 103
+ SPAY P SPAY+P SPA
Sbjct: 1653 SPTSPAYSPTSPAYSPTSPA 1672
>gi|156376605|ref|XP_001630450.1| predicted protein [Nematostella vectensis]
gi|156217471|gb|EDO38387.1| predicted protein [Nematostella vectensis]
Length = 187
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y + +P Y + +P Y +P YI +P Y +P Y + +P Y + +P Y + +P Y +
Sbjct: 88 PYIEGTPPYIEGTPPYIGGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIE 147
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ Y + + Y + +P Y + +P Y + +P Y + +S Y
Sbjct: 148 GTPPYIEDTPPYIEGTPPYIEGTPPYIEGTPPYIEGTSPY 187
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y + +P Y Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 65 TPPYIEGTPPYIEGTPPYIDGKLPYIEGTPPYIEGTPPYIGGTPPYIEGTPPYIEGTPPY 124
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + + Y + +P Y + +P Y + +P Y + + Y +
Sbjct: 125 IEGTPPYIEGTPPYIEGTPPYIEGTPPYIEDTPPYIEGTPPYIEGTPPYIE 175
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y Y + +P Y + +P YI +P Y +P Y + +P Y + +P Y
Sbjct: 72 TPPYIEGTPPYIDGKLPYIEGTPPYIEGTPPYIGGTPPYIEGTPPYIEGTPPYIEGTPPY 131
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + + Y + +P Y + +P Y + +P Y + + Y +
Sbjct: 132 IEGTPPYIEGTPPYIEGTPPYIEDTPPYIEGTPPYIEGTPPYIEGTPPYIE 182
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y +P Y + +P Y +P + +P YI +P Y Y +P Y + +P Y
Sbjct: 16 TPPYINGTPPYIEGTPPYIDGTPPCIEGTPPYIDGTPPYIKGKLPYIGGTPPYIEGTPPY 75
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y L Y + + Y + +P Y +P Y + +P Y + + Y +
Sbjct: 76 IEGTPPYIDGKLPYIEGTPPYIEGTPPYIGGTPPYIEGTPPYIEGTPPYIE 126
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + +P Y +P Y + +P Y +P I +P Y +P Y + Y +P Y
Sbjct: 9 TPPYIEGTPPYINGTPPYIEGTPPYIDGTPPCIEGTPPYIDGTPPYIKGKLPYIGGTPPY 68
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y L Y + +P Y + +P Y +P Y + + Y +
Sbjct: 69 IEGTPPYIEGTPPYIDGKLPYIEGTPPYIEGTPPYIGGTPPYIEGTPPYIE 119
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + Y +P Y + +P Y + +P YI Y +P Y + +P Y +P Y
Sbjct: 51 TPPYIKGKLPYIGGTPPYIEGTPPYIEGTPPYIDGKLPYIEGTPPYIEGTPPYIGGTPPY 110
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + + Y + +P Y + +P Y + +P Y + + Y +
Sbjct: 111 IEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEDTPPYIE 161
Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y +P Y + Y +P Y + +P YI +P Y Y + +P Y + +P Y
Sbjct: 44 TPPYIDGTPPYIKGKLPYIGGTPPYIEGTPPYIEGTPPYIDGKLPYIEGTPPYIEGTPPY 103
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+P Y + + Y + + Y + +P Y + +P Y + +P Y + + Y +
Sbjct: 104 IGGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIE 154
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y +P + +P Y +P Y + YI +P Y +P Y + +P Y Y
Sbjct: 30 TPPYIDGTPPCIEGTPPYIDGTPPYIKGKLPYIGGTPPYIEGTPPYIEGTPPYIDGKLPY 89
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + + Y + Y + +P Y + +P Y + +P Y + + Y +
Sbjct: 90 IEGTPPYIEGTPPYIGGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIE 140
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P + +P Y +P Y + Y +P YI +P Y +P Y Y + +P Y
Sbjct: 37 TPPCIEGTPPYIDGTPPYIKGKLPYIGGTPPYIEGTPPYIEGTPPYIDGKLPYIEGTPPY 96
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ +P Y + Y + + Y + +P Y + +P Y + +P Y + + Y +
Sbjct: 97 IEGTPPYIGGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIEGTPPYIE 147
>gi|83717067|ref|YP_440088.1| Rhs element Vgr protein [Burkholderia thailandensis E264]
gi|83650892|gb|ABC34956.1| Rhs element Vgr protein [Burkholderia thailandensis E264]
Length = 763
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 21/107 (19%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY------ 111
VS ++T VS ++T VS ++T VS ++T VS ++I VS ++T V + VS A
Sbjct: 556 VSASFTGVSTSFTGVSTSFTGVSTSFTGVSTSFIGVSTSFTGVDTGFKGVSTAMIGVSTS 615
Query: 112 --------TQVSPAYTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T VS + T +S ++T VS++ T VSL+YT S
Sbjct: 616 VVGSSNSVTGVSNSMTGISSSWTDVSMSTTGQSQSMTGVSLSYTGTS 662
>gi|257140718|ref|ZP_05588980.1| Rhs element Vgr protein [Burkholderia thailandensis E264]
Length = 748
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 21/107 (19%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY------ 111
VS ++T VS ++T VS ++T VS ++T VS ++I VS ++T V + VS A
Sbjct: 541 VSASFTGVSTSFTGVSTSFTGVSTSFTGVSTSFIGVSTSFTGVDTGFKGVSTAMIGVSTS 600
Query: 112 --------TQVSPAYTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T VS + T +S ++T VS++ T VSL+YT S
Sbjct: 601 VVGSSNSVTGVSNSMTGISSSWTDVSMSTTGQSQSMTGVSLSYTGTS 647
>gi|297298928|ref|XP_001090400.2| PREDICTED: hypothetical protein LOC702119 [Macaca mulatta]
Length = 689
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T +T+ P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y
Sbjct: 105 TPHTLQPPYHTLQPPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQPPYHALQPPYHA 164
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ P Y + P Y + Y + Y + P Y + P Y + P Y + + Y
Sbjct: 165 LQPPYHTLQPPYHVLQPPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQTPY 218
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+T+ P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y +
Sbjct: 114 HTLQPPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQPPYHALQPPYHALQPPYHTLQ 173
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P Y + P Y + Y + Y + P Y + P Y + Y + Y
Sbjct: 174 PPYHVLQPPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQTPYLALQPPY 225
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+T+ P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y +
Sbjct: 135 HTLQPPYHTLQPPYHALQPPYHALQPPYHALQPPYHTLQPPYHVLQPPYHALQPPYHALQ 194
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
P Y + P Y + Y + Y + P Y + P Y
Sbjct: 195 PPYHTLQPPYHTLQPPYHALQTPYLALQPPYHALQPPY 232
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ + P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y +
Sbjct: 128 HALQPPYHTLQPPYHTLQPPYHALQPPYHALQPPYHALQPPYHTLQPPYHVLQPPYHALQ 187
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P Y + P Y + Y + Y + Y + P Y + P Y + + Y
Sbjct: 188 PPYHALQPPYHTLQPPYHTLQPPYHALQTPYLALQPPYHALQPPYHALQTPY 239
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ + P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y +
Sbjct: 121 HALQPPYHALQPPYHTLQPPYHTLQPPYHALQPPYHALQPPYHALQPPYHTLQPPYHVLQ 180
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P Y + P Y + Y + Y + P Y + Y + P Y + Y
Sbjct: 181 PPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQTPYLALQPPYHALQPPY 232
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+T+ P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y +
Sbjct: 142 HTLQPPYHALQPPYHALQPPYHALQPPYHTLQPPYHVLQPPYHALQPPYHALQPPYHTLQ 201
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV-SPAYTQVSPAYT 161
P Y + P Y + Y + Y + P Y + +P +T P +T
Sbjct: 202 PPYHTLQPPYHALQTPYLALQPPYHALQPPYHALQTPYHTLQPPCHT 248
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ + P Y + P Y + P Y + P Y + P Y + P Y + P Y + Y +
Sbjct: 163 HALQPPYHTLQPPYHVLQPPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQTPYLALQ 222
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
P Y + P Y + Y + + P Y + Y + P Y + + Y ++
Sbjct: 223 PPYHALQPPYHALQTPYHTLQPPCHTLQPPYHALQTPYHTLQPPYHALQTPYHTLL 278
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 44/112 (39%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ + P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y +
Sbjct: 149 HALQPPYHALQPPYHALQPPYHTLQPPYHVLQPPYHALQPPYHALQPPYHTLQPPYHTLQ 208
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P Y + Y + Y + Y + Y + P + P Y + + Y
Sbjct: 209 PPYHALQTPYLALQPPYHALQPPYHALQTPYHTLQPPCHTLQPPYHALQTPY 260
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY---T 112
+T P P Y + P Y + P Y P Y P Y + P+Y + P Y
Sbjct: 48 HTPQPPCRTPQPPYHTLQPLYQTLQPPYQTFQPPYHTPKPPYHTLQPSYHTLQPPYHTPH 107
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ P Y + P Y + Y + Y + P Y + P Y + P Y + Y
Sbjct: 108 TLQPPYHTLQPPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQPPYHALQPPY 162
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 43/112 (38%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ + P Y + P Y + P Y + P Y + P Y + P Y + P Y + P Y +
Sbjct: 156 HALQPPYHALQPPYHTLQPPYHVLQPPYHALQPPYHALQPPYHTLQPPYHTLQPPYHALQ 215
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Y + P Y + Y + Y + P + P Y + Y + Y
Sbjct: 216 TPYLALQPPYHALQPPYHALQTPYHTLQPPCHTLQPPYHALQTPYHTLQPPY 267
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP+Y+P SP Y+ SP+Y+ SP Y+ SP+Y+ S Y+ S Y+ SP Y+
Sbjct: 1662 YSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPTSPRYSPG 1721
Query: 150 SPAYTQVSP 158
SP Y SP
Sbjct: 1722 SPGYEPKSP 1730
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
Y+ SP+Y+ SP Y P SP+Y+P SP Y+ SP+Y+ SP Y+ SP Y
Sbjct: 1662 YSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPQY---------- 1711
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPAY 160
SP P Y+ SP Y
Sbjct: 1712 -------SPTS----PRYSPGSPGY 1725
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
Y+ SP+Y+ SP Y+ SP+Y+ S Y+ S +Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1662 YSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPTSPRYSPG 1721
Query: 164 SSAY 167
S Y
Sbjct: 1722 SPGY 1725
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP+Y+ SP Y+ S +Y+ S Y+ SP+Y+ SP Y+ SP Y+ S Y+
Sbjct: 1662 YSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPTSPRYS 1719
>gi|322799890|gb|EFZ21031.1| hypothetical protein SINV_02952 [Solenopsis invicta]
Length = 512
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
SY LI +F+R+D EDYLS DEDEATVY +S V+ A + + VS A +V
Sbjct: 13 SYALIARFRRRDREDYLSVDEDEATVYRISLWLCTVALAISVGATLLLPVSIASNEVLIL 72
Query: 90 Y 90
Y
Sbjct: 73 Y 73
>gi|403522036|ref|YP_006657605.1| Rhs element Vgr protein [Burkholderia pseudomallei BPC006]
gi|403077103|gb|AFR18682.1| Rhs element Vgr protein [Burkholderia pseudomallei BPC006]
Length = 748
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V + VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 555 VSTSFTGVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 614
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVSPA 145
T +S ++T VS++ T VSL+YT S +
Sbjct: 615 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTSNS 649
>gi|386864293|ref|YP_006277241.1| type VI secretion system [Burkholderia pseudomallei 1026b]
gi|385661421|gb|AFI68843.1| type VI secretion system [Burkholderia pseudomallei 1026b]
Length = 762
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V ++ VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 569 VSTSFTGVSTSFTGVDTSFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 628
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVSPA 145
T +S ++T VS++ T VSL+YT S +
Sbjct: 629 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTSNS 663
>gi|254296667|ref|ZP_04964121.1| Rhs element Vgr protein [Burkholderia pseudomallei 406e]
gi|157806713|gb|EDO83883.1| Rhs element Vgr protein [Burkholderia pseudomallei 406e]
Length = 763
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V + VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 570 VSTSFTGVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 629
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T +S ++T VS++ T VSL+YT S
Sbjct: 630 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTS 662
>gi|291234193|ref|XP_002737036.1| PREDICTED: kelch-like 24-like [Saccoglossus kowalevskii]
Length = 947
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
ST +D + V P+ ++ S +QV P ++ S +QV P S + V P ++
Sbjct: 189 STSKDSDEISQVKPSISKDSDEISQVKPNTSKDSDEISQVKPNTSKDSDETSQVKPNTSK 248
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
S +QV P+ ++ S +QV ++ S +QV P ++ S +QV P+ ++ S
Sbjct: 249 DSDEISQVKPSTSKDSDEISQVKPNTSKDSDEISQVKPNTSKDSDEISQVKPSTSKESDD 308
Query: 167 YTQVILNKIRPGRESNSRS 185
+Q +K ++N +S
Sbjct: 309 ISQEKPSKSHKSNKANQKS 327
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
T E ++ V S QV P+ ++ S +QV P+ ++ S V P + S +QV
Sbjct: 169 TSEAKSMVLMESDEILQVKPSTSKDSDEISQVKPSISKDSDEISQVKPNTSKDSDEISQV 228
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQV-------SLAYTQVSPAYTQVSPAYTQVSPAY 160
P ++ S +QV P ++ S +QV S +QV P ++ S +QV P
Sbjct: 229 KPNTSKDSDETSQVKPNTSKDSDEISQVKPSTSKDSDEISQVKPNTSKDSDEISQVKPNT 288
Query: 161 TQVSSAYTQV 170
++ S +QV
Sbjct: 289 SKDSDEISQV 298
>gi|217424448|ref|ZP_03455946.1| Rhs element Vgr protein [Burkholderia pseudomallei 576]
gi|217392372|gb|EEC32396.1| Rhs element Vgr protein [Burkholderia pseudomallei 576]
Length = 763
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V + VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 570 VSTSFTGVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 629
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T +S ++T VS++ T VSL+YT S
Sbjct: 630 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTS 662
>gi|260797560|ref|XP_002593770.1| hypothetical protein BRAFLDRAFT_104340 [Branchiostoma floridae]
gi|229278999|gb|EEN49781.1| hypothetical protein BRAFLDRAFT_104340 [Branchiostoma floridae]
Length = 266
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 55 VYTVSPAYTQVSPAYT--QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
V+ V + +T QV + TQV + QV + I V + T V + TQV + T
Sbjct: 38 VHKVDKREKERKKQHTKIQVDQSTTQVDLSKIQVDQSKIQVEQSKTQVDQSKTQVDQSKT 97
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS----PAYTQ------ 162
QV + TQ+ TQ+ + TQ+ ++ TQV+ ++ AY Q
Sbjct: 98 QVDQSKTQLDECKTQLDQSKTQLDKTLEELQQTKTQVNQLQKELKEHQHEAYRQKERDIC 157
Query: 163 VSSAYTQVILNKIRP 177
V Y + +++R
Sbjct: 158 VKEEYLSRLKDQLRK 172
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T V + TQV + QV + QV + TQV + V + T V + TQ+ TQ
Sbjct: 53 TKIQVDQSTTQVDLSKIQVDQSKIQVEQSKTQVDQSKTQVDQSKTQVDQSKTQLDECKTQ 112
Query: 114 VSPAYTQVSPAYTQVSLAYTQVS 136
+ + TQ+ ++ TQV+
Sbjct: 113 LDQSKTQLDKTLEELQQTKTQVN 135
>gi|291229396|ref|XP_002734641.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 756
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P V+ Y V+P P V+ Y V+P P V+ Y V+P
Sbjct: 372 PGQAGVASGYAGVAPGQAGFVPGQAGVASGYAGVAPGQAGFVPGQAGVASGYAGVAPGQA 431
Query: 120 QVSPAYTQVSLAYTQVSLAYTQ--VSPAYTQVSPAYTQVSPAYTQVSSAY 167
P V Y + Y V+PAY V+ A+T ++P + +SS++
Sbjct: 432 GFVPGQAGVGSGYAGATPGYAGEGVAPAYPGVATAHTGIAPGHAGISSSH 481
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P V+ Y V+P P V+ Y V+P P V Y +P Y
Sbjct: 393 PGQAGVASGYAGVAPGQAGFVPGQAGVASGYAGVAPGQAGFVPGQAGVGSGYAGATPGYA 452
Query: 120 --QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP--AYTQVSPAY 160
V+PAY V+ A+T ++ + +S ++ P A ++P Y
Sbjct: 453 GEGVAPAYPGVATAHTGIAPGHAGISSSHVGGVPGHAVEGMAPGY 497
Score = 44.3 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 14/149 (9%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
L+T + + Y +P V+ + P V+ Y V+P P
Sbjct: 337 LATTHGDISGTAAEHGYADATPGQAGVAAGHAGFVPGQAGVASGYAGVAPGQAGFVPGQA 396
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP-------AYTQVSPAYT--QV 156
V+ Y V+P P V+ Y V+ P Y +P Y V
Sbjct: 397 GVASGYAGVAPGQAGFVPGQAGVASGYAGVAPGQAGFVPGQAGVGSGYAGATPGYAGEGV 456
Query: 157 SPAYTQVSSAYTQVILNKIRPGRESNSRS 185
+PAY V++A+T I PG S S
Sbjct: 457 APAYPGVATAHT-----GIAPGHAGISSS 480
>gi|126456440|ref|YP_001074743.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106a]
gi|242311231|ref|ZP_04810248.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106b]
gi|126230208|gb|ABN93621.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106a]
gi|242134470|gb|EES20873.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106b]
Length = 763
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V + VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 570 VSTSFTGVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 629
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T +S ++T VS++ T VSL+YT S
Sbjct: 630 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTS 662
>gi|332017467|gb|EGI58190.1| Protein LMBR1L [Acromyrmex echinatior]
Length = 534
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
SY LI +F+R+D EDYLS DEDEATVY +S V+ A + + VS A +V
Sbjct: 33 SYALIARFRRRDREDYLSVDEDEATVYRISLWLCTVALAISVGATLLLPVSIASNEVLIL 92
Query: 90 Y 90
Y
Sbjct: 93 Y 93
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPA-YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
++ SP V+ A SPAY+ SP Y+ SP + P SP ++P SP ++ SP ++
Sbjct: 1621 MFRTSPTSPWVNGALGNTSPAYSPTSPNHYSPASPNFSPASPRFSPSSPRFSPASPNFSP 1680
Query: 114 VSPAYT-----QVSPAYTQVSLAYTQ--VSLAYTQVSPAYTQVSPAYTQVSP 158
SP Y + SP Q S A + Y+ SP+Y+ SPA++ SP
Sbjct: 1681 ASPNYAPNGQRRASPTSPQFSPAGHRSPTGQRYSPTSPSYSPTSPAFSPTSP 1732
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 59 SPAYTQVSPAYTQVSPAYT-----QVSPAYTQVSPA---------YIPVSPAYTPVSPAY 104
SP ++ SP ++ SP Y + SP Q SPA Y P SP+Y+P SPA+
Sbjct: 1668 SPRFSPASPNFSPASPNYAPNGQRRASPTSPQFSPAGHRSPTGQRYSPTSPSYSPTSPAF 1727
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SP A ++ S + S A + + Y+ SP+Y+ SPAY+ SP ++
Sbjct: 1728 SPTSPNGLYSPAASSRGSRKGSGASAAASASARKYSPTSPSYSPTSPAYSPTSPNAMSMA 1787
Query: 165 S 165
S
Sbjct: 1788 S 1788
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 62 YTQVSPAYTQVSP--AYTQVSPAYTQVSPAYIPVSP-AYTPVSPAYTQVSPAYTQVSPAY 118
Y+ P SP AY+ SP Y+ SP+Y+P SP A SP + + SP V+ A
Sbjct: 1577 YSIGGPGDLNTSPQGAYSPTSPGYSPASPSYVPTSPNAMGATSPMF-RTSPTSPWVNGAL 1635
Query: 119 TQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
SPAY+ S Y+ S ++ SP ++ SP ++ SP ++ S Y
Sbjct: 1636 GNTSPAYSPTSPNHYSPASPNFSPASPRFSPSSPRFSPASPNFSPASPNY 1685
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 36/145 (24%)
Query: 53 ATVYTVSPAYTQVSPA-YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP--------- 102
+ SPAY+ SP Y+ SP ++ SP ++ SP + P SP ++P SP
Sbjct: 1633 GALGNTSPAYSPTSPNHYSPASPNFSPASPRFSPSSPRFSPASPNFSPASPNYAPNGQRR 1692
Query: 103 -------------------AYTQVSPAYTQVSPAYTQVSP-------AYTQVSLAYTQVS 136
Y+ SP+Y+ SPA++ SP A ++ S + S
Sbjct: 1693 ASPTSPQFSPAGHRSPTGQRYSPTSPSYSPTSPAFSPTSPNGLYSPAASSRGSRKGSGAS 1752
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYT 161
A + + Y+ SP+Y+ SPAY+
Sbjct: 1753 AAASASARKYSPTSPSYSPTSPAYS 1777
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 58/157 (36%), Gaps = 53/157 (33%)
Query: 62 YTQVSPAYTQVSPAYTQVSP------------AYTQVSPAYIPVSPAYTPVSPAYT---- 105
+ SP Y+ SP Y+ SP ++ SPAY P SPAY+P SP+
Sbjct: 1570 FGMASPGYSPASPNYSPTSPRMATSPGFSGGLGFSPASPAYSPTSPAYSPTSPSMAGGAY 1629
Query: 106 -------------------------------QVSPAYTQVSPAYTQVSPAY-----TQVS 129
SPAY+ SP Y+ SP + T
Sbjct: 1630 GTSPTSPSYSPTSPSYSPTSPSFSPTSPSYSPTSPAYSPTSPQYSPTSPQFNGGGGTTNF 1689
Query: 130 LAYTQVSLAYTQVSPAYTQVSP-AYTQVSPAYTQVSS 165
+ S +Y+ SP Y+ SP AY+ SP + S
Sbjct: 1690 SPTSPTSPSYSPTSPQYSPTSPNAYSPTSPQFATPGS 1726
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 60/165 (36%), Gaps = 55/165 (33%)
Query: 67 PAYTQVSP--AYTQVSPAYTQVSPAYIPVSPAYTPVSP------------AYTQVSPAYT 112
P+Y P T SP + SP Y P SP Y+P SP ++ SPAY+
Sbjct: 1553 PSYPMPEPFGGTTPRSP-FGMASPGYSPASPNYSPTSPRMATSPGFSGGLGFSPASPAYS 1611
Query: 113 QVSPAYTQVSPAYT----------------------------QVSLAYTQVSLAYTQVSP 144
SPAY+ SP+ S +Y+ S AY+ SP
Sbjct: 1612 PTSPAYSPTSPSMAGGAYGTSPTSPSYSPTSPSYSPTSPSFSPTSPSYSPTSPAYSPTSP 1671
Query: 145 AYTQVSPAY------------TQVSPAYTQVSSAYTQVILNKIRP 177
Y+ SP + + SP+Y+ S Y+ N P
Sbjct: 1672 QYSPTSPQFNGGGGTTNFSPTSPTSPSYSPTSPQYSPTSPNAYSP 1716
Score = 45.1 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 48/115 (41%)
Query: 59 SPAYTQVSPAYTQVSPAYT-----------------------------------QVSPAY 83
SPAY+ SPAY+ SP+ SPAY
Sbjct: 1607 SPAYSPTSPAYSPTSPSMAGGAYGTSPTSPSYSPTSPSYSPTSPSFSPTSPSYSPTSPAY 1666
Query: 84 TQVSPAYIPVSPAY------------TPVSPAYTQVSPAYTQVSP-AYTQVSPAY 125
+ SP Y P SP + +P SP+Y+ SP Y+ SP AY+ SP +
Sbjct: 1667 SPTSPQYSPTSPQFNGGGGTTNFSPTSPTSPSYSPTSPQYSPTSPNAYSPTSPQF 1721
>gi|226196514|ref|ZP_03792095.1| Rhs element Vgr protein [Burkholderia pseudomallei Pakistan 9]
gi|225931390|gb|EEH27396.1| Rhs element Vgr protein [Burkholderia pseudomallei Pakistan 9]
Length = 763
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 7/95 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V ++ VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 570 VSTSFTGVSTSFTGVDTSFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 629
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVSPA 145
T +S ++T VS++ T VSL+YT S +
Sbjct: 630 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTSNS 664
>gi|53716549|ref|YP_105223.1| Rhs element Vgr protein [Burkholderia mallei ATCC 23344]
gi|67642638|ref|ZP_00441392.1| Rhs element Vgr protein [Burkholderia mallei GB8 horse 4]
gi|121597383|ref|YP_990346.1| Rhs element Vgr protein [Burkholderia mallei SAVP1]
gi|124382197|ref|YP_001024844.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10229]
gi|126446562|ref|YP_001079186.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10247]
gi|167003570|ref|ZP_02269356.1| Rhs element Vgr protein [Burkholderia mallei PRL-20]
gi|254203180|ref|ZP_04909542.1| Rhs element Vgr protein [Burkholderia mallei FMH]
gi|254208515|ref|ZP_04914864.1| Rhs element Vgr protein [Burkholderia mallei JHU]
gi|254355986|ref|ZP_04972263.1| Rhs element Vgr protein [Burkholderia mallei 2002721280]
gi|52422519|gb|AAU46089.1| Rhs element Vgr protein [Burkholderia mallei ATCC 23344]
gi|121225181|gb|ABM48712.1| Rhs element Vgr protein [Burkholderia mallei SAVP1]
gi|124290217|gb|ABM99486.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10229]
gi|126239416|gb|ABO02528.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10247]
gi|147746225|gb|EDK53303.1| Rhs element Vgr protein [Burkholderia mallei FMH]
gi|147751202|gb|EDK58270.1| Rhs element Vgr protein [Burkholderia mallei JHU]
gi|148024969|gb|EDK83138.1| Rhs element Vgr protein [Burkholderia mallei 2002721280]
gi|238523826|gb|EEP87262.1| Rhs element Vgr protein [Burkholderia mallei GB8 horse 4]
gi|243060904|gb|EES43090.1| Rhs element Vgr protein [Burkholderia mallei PRL-20]
Length = 748
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 7/93 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V + VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 555 VSTSFTGVSTSFTGVDTGFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 614
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T +S ++T VS++ T VSL+YT S
Sbjct: 615 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTS 647
>gi|156399519|ref|XP_001638549.1| predicted protein [Nematostella vectensis]
gi|156225670|gb|EDO46486.1| predicted protein [Nematostella vectensis]
Length = 311
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%)
Query: 44 DYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
+LS + + P+Y P+Y P+Y P+Y P+Y+ P+Y P+
Sbjct: 21 GHLSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMGHPS 80
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
Y P+Y P+Y P+Y +Y +Y P+Y P+Y P+Y
Sbjct: 81 YEMGHPSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYVMSHPSYVMGHPSYVMG 140
Query: 164 SSAY 167
+Y
Sbjct: 141 HPSY 144
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 30 PSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYV 89
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 90 MGHPSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYVMSHPSYVMGHPSYVM 139
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 58 PSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYV 117
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 118 MGHPSYVMSHPSYVMGHPSYVMGHPSYVTGHPSYVMGHPSYVMGHPSYVM 167
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 65 PSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYV 124
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 125 MSHPSYVMGHPSYVMGHPSYVTGHPSYVMGHPSYVMGHPSYVMGHPSY 172
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 44 PSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYV 103
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 104 MCHPSYVMGHPSYVMGHPSYVMSHPSYVMGHPSYVMGHPSYVTGHPSYVM 153
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 72 PSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYVMSHPSYV 131
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 132 MGHPSYVMGHPSYVTGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSY 179
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 191 PSYVMGHPSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYV 250
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 251 MGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSY 298
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 86 PSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYVMSHPSYVMGHPSYVMGHPSYV 145
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 146 TGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYVM 195
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 93 PSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYVMSHPSYVMGHPSYVMGHPSYVTGHPSYV 152
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 153 MGHPSYVMGHPSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYVM 202
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 100 PSYVMCHPSYVMGHPSYVMGHPSYVMSHPSYVMGHPSYVMGHPSYVTGHPSYVMGHPSYV 159
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 160 MGHPSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSY 207
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 107 PSYVMGHPSYVMGHPSYVMSHPSYVMGHPSYVMGHPSYVTGHPSYVMGHPSYVMGHPSYV 166
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 167 MGHPSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYKMGHPSY 214
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 198 PSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYV 257
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 258 MGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYRMGQPSY 305
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y
Sbjct: 51 PSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMCHPSYV 110
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 111 MGHPSYVMGHPSYVMSHPSYVMGHPSYVMGHPSYVTGHPSYVMGHPSYVM 160
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y
Sbjct: 184 PSYVMGHPSYVMGHPSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYV 243
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 244 MGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVM 293
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 156 PSYVMGHPSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYKMGHPSYQ 215
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 216 IGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVM 265
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 163 PSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYKMGHPSYQIGHPSYV 222
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 223 MGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVM 272
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 170 PSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYV 229
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 230 MGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVM 279
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y P
Sbjct: 146 TGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHP 205
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+Y P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 206 SYKMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVM 258
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 128 PSYVMGHPSYVMGHPSYVTGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYQIGHPSYV 187
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 188 MGHPSYVMGHPSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYVMGHPSYVM 237
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 135 PSYVMGHPSYVTGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYV 194
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 195 MGHPSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYVM 244
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 121 PSYVMSHPSYVMGHPSYVMGHPSYVTGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYQ 180
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 181 IGHPSYVMGHPSYVMGHPSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYVM 230
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y
Sbjct: 177 PSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYKMGHPSYQIGHPSYVMGHPSYVMGHPSYV 236
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 237 MGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVM 286
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y
Sbjct: 24 SYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEM 83
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 84 GHPSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYVMSHPSYVM 132
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y +Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 9 PSYVMGHPSYEMGHLSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYV 68
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 69 MGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYVM 118
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y +Y P+Y P+Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 16 PSYEMGHLSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYV 75
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 76 MGHPSYEMGHPSYVMGHPSYVMGHPSYVMCHPSYVMGHPSYVMGHPSYVM 125
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y P+Y
Sbjct: 142 PSYVTGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYQIGHPSYVMGHPSYVMGHPSYV 201
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 202 MGHPSYKMGHPSYQIGHPSYVMGHPSYVMGHPSYVMGHPSYVMGHPSYVM 251
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 46/110 (41%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+++ P+Y P+Y +Y P+Y+ P+Y P+Y P+Y P+Y
Sbjct: 2 PSFSFGHPSYVMGHPSYEMGHLSYEMGHPSYVMGHPSYVMGHPSYVMGHPSYEMGHPSYV 61
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
P+Y +Y +Y P+Y P+Y P+Y +Y
Sbjct: 62 MGHPSYVMGHPSYVMGHPSYEMGHPSYVMGHPSYVMGHPSYVMCHPSYVM 111
>gi|76819321|ref|YP_337232.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710b]
gi|126442945|ref|YP_001061795.1| Rhs element Vgr protein [Burkholderia pseudomallei 668]
gi|134283049|ref|ZP_01769751.1| Rhs element Vgr protein [Burkholderia pseudomallei 305]
gi|237507938|ref|ZP_04520653.1| Rhs element Vgr protein [Burkholderia pseudomallei MSHR346]
gi|254185457|ref|ZP_04892045.1| Rhs element Vgr protein [Burkholderia pseudomallei 1655]
gi|254187342|ref|ZP_04893856.1| Rhs element Vgr protein [Burkholderia pseudomallei Pasteur 52237]
gi|254264945|ref|ZP_04955810.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710a]
gi|76583794|gb|ABA53268.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710b]
gi|126222436|gb|ABN85941.1| Rhs element Vgr protein [Burkholderia pseudomallei 668]
gi|134245697|gb|EBA45789.1| Rhs element Vgr protein [Burkholderia pseudomallei 305]
gi|157935024|gb|EDO90694.1| Rhs element Vgr protein [Burkholderia pseudomallei Pasteur 52237]
gi|184209692|gb|EDU06735.1| Rhs element Vgr protein [Burkholderia pseudomallei 1655]
gi|235000143|gb|EEP49567.1| Rhs element Vgr protein [Burkholderia pseudomallei MSHR346]
gi|254215947|gb|EET05332.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710a]
Length = 763
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V ++ VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 570 VSTSFTGVSTSFTGVDTSFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 629
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T +S ++T VS++ T VSL+YT S
Sbjct: 630 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTS 662
>gi|53721559|ref|YP_110544.1| hypothetical protein BPSS0523 [Burkholderia pseudomallei K96243]
gi|254198986|ref|ZP_04905404.1| Rhs element Vgr protein [Burkholderia pseudomallei S13]
gi|52211973|emb|CAH37980.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|169657158|gb|EDS88552.1| Rhs element Vgr protein [Burkholderia pseudomallei S13]
Length = 763
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 7/93 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V ++ VS ++T V ++ VS ++T VS + T S + T VS +
Sbjct: 570 VSTSFTGVSTSFTGVDTSFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNS 629
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVS 143
T +S ++T VS++ T VSL+YT S
Sbjct: 630 MTGISSSWTDVSMSTTGQSQSITGVSLSYTGTS 662
>gi|384200512|ref|YP_005586255.1| ABC transporter permease [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320459464|dbj|BAJ70085.1| ABC transporter permease component [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 1210
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 292 QKARRQQIVSSAQRRLDDAKDEAN-EQLDEAQKQIDDNWAELEANETTLQDSRTELENNR 350
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ A T+++
Sbjct: 351 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELT 410
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 411 ANRTKIEQGITQIDQGVAQI 430
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A ++ A + A Q+ A Q+ + + T + + T++ T ++
Sbjct: 300 VSSAQRRLDDAKDE---ANEQLDEAQKQIDDNWAELEANETTLQDSRTELENNRTTITDG 356
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Q++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ +A T++ N+ +
Sbjct: 357 ERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTK 415
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 331 ELEANETTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 390
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
TQ++ A Q+ A T+++ T++ TQ+ Q+ + + A
Sbjct: 391 GKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQA 440
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T + + T++ T ++ Q++ ++ A ++ Q++ A TQ+ TQ++
Sbjct: 337 TTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLT 396
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
A Q+ A T+++ T++ TQ+ Q+ + + A +L ++ P + N
Sbjct: 397 SARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQADN--LLAQLDPNIDFN 454
Query: 183 S 183
S
Sbjct: 455 S 455
>gi|167572317|ref|ZP_02365191.1| Rhs element Vgr protein [Burkholderia oklahomensis C6786]
Length = 763
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++ VS ++T V + VS A I VS + S + T VS + T +S +
Sbjct: 577 VSTSFTGVSTSFIGVSTSFTGVDTGFKGVSTAMIGVSTSIVGSSNSVTGVSNSMTGISSS 636
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+T VS + T S + T VSL+YT S +
Sbjct: 637 WTDVSMSTTGQSQSITGVSLSYTGTSNS 664
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP Y+ SP Y+ SP Y+ S Y P SP YTP SP Y+ SP Y+ P+Y+
Sbjct: 1812 YSPTSPKYSPTSPTYSPTSPQYSPSSSKYSPTSPTYTPTSPKYSPTSPTYSP-GPSYSPT 1870
Query: 122 SPAYTQVS 129
SP Y+ S
Sbjct: 1871 SPTYSPTS 1878
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP YT SP Y+ SP Y+ SP+Y+ SP + P SP Y+P SP Y+ SP Y+ SP Y
Sbjct: 1774 SPQYTPASPKYSPTSPTYSPTSPSYSPSSPQHSPTSPRYSPTSPKYSPTSPTYSPTSPQY 1833
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ S Y+ S YT S Y+ SP Y+ P+Y+ SP Y+ S +
Sbjct: 1834 SPSSSKYSPTSPTYTPTSPKYSPTSPTYSP-GPSYSPTSPTYSPTSPLF 1881
>gi|317482634|ref|ZP_07941648.1| SalY-type ABC antimicrobial peptide transport system permease
component [Bifidobacterium sp. 12_1_47BFAA]
gi|316915880|gb|EFV37288.1| SalY-type ABC antimicrobial peptide transport system permease
component [Bifidobacterium sp. 12_1_47BFAA]
Length = 1241
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
L +DEA + A Q+ + ++ T + + T++ ++ ++
Sbjct: 338 LDDAKDEAN-EQLDEAQKQIDDNWAELEANKTTLQDSRTELENNRTTITDGERQLADGRA 396
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
Q++ A Q++ Q++ A TQ+ TQ++ A Q+ A T+++ T++ TQ+
Sbjct: 397 QIATARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQ 456
Query: 166 AYTQV 170
Q+
Sbjct: 457 GMAQI 461
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A ++ A + A Q+ A Q+ + + T + + T++ T ++
Sbjct: 331 VSSAQRKLDDAKDE---ANEQLDEAQKQIDDNWAELEANKTTLQDSRTELENNRTTITDG 387
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Q++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ +A T++ N+ +
Sbjct: 388 ERQLADGRAQIATARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTK 446
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 362 ELEANKTTLQDSRTELENNRTTITDGERQLADGRAQIATARQQIAQGRQQIAEARTQLES 421
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
TQ++ A Q+ A T+++ T++ TQ+ Q+ Q+ P Q ++ Q
Sbjct: 422 GKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQGMAQID----QMLPMIQQANNLLAQ 477
Query: 170 V 170
+
Sbjct: 478 L 478
>gi|312133710|ref|YP_004001049.1| saly-type abc antimicrobial peptide transport system permease
component [Bifidobacterium longum subsp. longum BBMN68]
gi|311772983|gb|ADQ02471.1| SalY-type ABC antimicrobial peptide transport system permease
component [Bifidobacterium longum subsp. longum BBMN68]
Length = 1232
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 314 QKARRQQIVSSAQRKLDDAKDEAN-EQLDEAQKQIDDNWAELEANKTTLQDSRTELENNR 372
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ A T+++
Sbjct: 373 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELT 432
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 433 ANRTKIEQGITQIDQGVAQI 452
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A ++ A + A Q+ A Q+ + + T + + T++ T ++
Sbjct: 322 VSSAQRKLDDAKDE---ANEQLDEAQKQIDDNWAELEANKTTLQDSRTELENNRTTITDG 378
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Q++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ +A T++ N+ +
Sbjct: 379 ERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTK 437
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 353 ELEANKTTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 412
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
TQ++ A Q+ A T+++ T++ TQ+ Q+ + + A
Sbjct: 413 GKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQA 462
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T + + T++ T ++ Q++ ++ A ++ Q++ A TQ+ TQ++
Sbjct: 359 TTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLT 418
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
A Q+ A T+++ T++ TQ+ Q+ + + A +L ++ P + N
Sbjct: 419 SARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQADN--LLAQLDPNIDFN 476
Query: 183 S 183
S
Sbjct: 477 S 477
>gi|239621103|ref|ZP_04664134.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239516025|gb|EEQ55892.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 1203
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 285 QKARRQQIVSSAQRKLDDAQDEAN-EQLDEAQKQIDDNWAELEANETTLQDSRTELENNR 343
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ A T+++
Sbjct: 344 TTITDGERQLADGRAQIATARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELT 403
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 404 ANRTKIEQGITQIDQGMAQI 423
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A ++ A + A Q+ A Q+ + + T + + T++ T ++
Sbjct: 293 VSSAQRKLDDAQDE---ANEQLDEAQKQIDDNWAELEANETTLQDSRTELENNRTTITDG 349
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Q++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ +A T++ N+ +
Sbjct: 350 ERQLADGRAQIATARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTK 408
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 324 ELEANETTLQDSRTELENNRTTITDGERQLADGRAQIATARQQIAQGRQQIAEARTQLES 383
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
TQ++ A Q+ A T+++ T++ TQ+ Q+ Q+ P Q ++ Q
Sbjct: 384 GKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQGMAQID----QMLPMIQQANNLLAQ 439
Query: 170 V 170
+
Sbjct: 440 L 440
>gi|213693283|ref|YP_002323869.1| hypothetical protein Blon_2437 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213524744|gb|ACJ53491.1| protein of unknown function DUF214 [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 1206
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 288 QKARRQQIVSSAQRRLDDAKDEAN-EQLDEAQKQIDDNWAELEANETTLQDSRTELENNR 346
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ A T+++
Sbjct: 347 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELT 406
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 407 ANRTKIEQGITQIDQGVAQI 426
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A ++ A + A Q+ A Q+ + + T + + T++ T ++
Sbjct: 296 VSSAQRRLDDAKDE---ANEQLDEAQKQIDDNWAELEANETTLQDSRTELENNRTTITDG 352
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Q++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ +A T++ N+ +
Sbjct: 353 ERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTK 411
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 327 ELEANETTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 386
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
TQ++ A Q+ A T+++ T++ TQ+ Q+ + + A
Sbjct: 387 GKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQA 436
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T + + T++ T ++ Q++ ++ A ++ Q++ A TQ+ TQ++
Sbjct: 333 TTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKTQLT 392
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
A Q+ A T+++ T++ TQ+ Q+ + + A +L ++ P + N
Sbjct: 393 SARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQADN--LLAQLDPNIDFN 450
Query: 183 S 183
S
Sbjct: 451 S 451
>gi|46190582|ref|ZP_00121322.2| COG0577: ABC-type antimicrobial peptide transport system, permease
component [Bifidobacterium longum DJO10A]
gi|189440378|ref|YP_001955459.1| SalY-type ABC antimicrobial peptide transport system permease
component [Bifidobacterium longum DJO10A]
gi|189428813|gb|ACD98961.1| SalY-type ABC antimicrobial peptide transport system permease
component [Bifidobacterium longum DJO10A]
Length = 1211
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 293 QKARRQQIVSSAQRKLDDAQDEAN-EQLDEAQKQIDDNWAELEANETTLQDSRTELENNR 351
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ A T+++
Sbjct: 352 TTITDGERQLADGRAQIATARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELT 411
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 412 ANRTKIEQGITQIDQGMAQI 431
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A ++ A + A Q+ A Q+ + + T + + T++ T ++
Sbjct: 301 VSSAQRKLDDAQDE---ANEQLDEAQKQIDDNWAELEANETTLQDSRTELENNRTTITDG 357
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Q++ Q++ A Q++ Q++ A TQ+ TQ++ A Q+ +A T++ N+ +
Sbjct: 358 ERQLADGRAQIATARQQIAQGRQQIAEARTQLESGKTQLTSARKQLDAAQTELTANRTK 416
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 332 ELEANETTLQDSRTELENNRTTITDGERQLADGRAQIATARQQIAQGRQQIAEARTQLES 391
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
TQ++ A Q+ A T+++ T++ TQ+ Q+ Q+ P Q ++ Q
Sbjct: 392 GKTQLTSARKQLDAAQTELTANRTKIEQGITQIDQGMAQID----QMLPMIQQANNLLAQ 447
Query: 170 V 170
+
Sbjct: 448 L 448
>gi|380023132|ref|XP_003695381.1| PREDICTED: protein LMBR1L-like [Apis florea]
Length = 524
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
SY LI KF+R+D EDY S DEDEATVY +S V+ A + + VS A +V
Sbjct: 33 SYALIAKFRRRDREDYFSVDEDEATVYRISLWLCTVALAVSVGATLLLPVSIASNEVLIL 92
Query: 90 Y 90
Y
Sbjct: 93 Y 93
>gi|443719578|gb|ELU09673.1| hypothetical protein CAPTEDRAFT_129617 [Capitella teleta]
Length = 75
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
V + V P + V P + V P + V P +I V P + V P + V P + V P
Sbjct: 7 VVKSGFIVVKPGFNVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKP 66
Query: 117 AYTQ 120
+ +
Sbjct: 67 GFIE 70
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
V + V P + V P + V P +I V P + V P + V P + V P + V P
Sbjct: 8 VKSGFIVVKPGFNVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPG 67
Query: 125 YTQ 127
+ +
Sbjct: 68 FIE 70
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 72 VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
V + V P + V P +I V P + V P + V P + V P + V P + V
Sbjct: 8 VKSGFIVVKPGFNVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPGFIVVKPG 67
Query: 132 YTQ 134
+ +
Sbjct: 68 FIE 70
>gi|66543947|ref|XP_397358.2| PREDICTED: protein LMBR1L-like isoform 1 [Apis mellifera]
Length = 524
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
SY LI KF+R+D EDY S DEDEATVY +S V+ A + + VS A +V
Sbjct: 33 SYALIAKFRRRDREDYFSVDEDEATVYRISLWLCTVALAVSVGATLLLPVSIASNEVLIL 92
Query: 90 Y 90
Y
Sbjct: 93 Y 93
>gi|344254802|gb|EGW10906.1| Uncharacterized protein C2orf55 [Cricetulus griseus]
Length = 1127
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 56/112 (50%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V +SP+ V+P +SP T +SP+ V+P +SP T +SP+ V+P +
Sbjct: 479 VRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDM 538
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP T +SP+ V+ +S T +SP+ V+P V+P +S +
Sbjct: 539 SPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPKRIVAPPERDMSPS 590
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP T +SP+ V+P +SP T +SP+ V+P +SP T +SP+ V+P
Sbjct: 496 MSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPP 555
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
+SP T +S + V+ V+P +SP+ ++P + IL K P
Sbjct: 556 ERDMSPPETDLSPSKGNVAPPKRIVAPPERDMSPSKGDIAPTKGIMELPSRDTILPKAPP 615
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++P +SP+ V+P +SP T +SP+ V+P +SP T +SP+ V+P
Sbjct: 475 LAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPP 534
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+SP T +S + V+ +SP T +SP+ V+P
Sbjct: 535 ERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAP 575
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 53/107 (49%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++P ++P +SP+ V+P +SP +SP+ V+P +SP T +SP+
Sbjct: 468 MAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPS 527
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
V+P +S T +S + V+P +SP T +SP+ V+
Sbjct: 528 KGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVA 574
Score = 43.9 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP+ ++ + ++P ++P +SP+ V+P +SP T +SP+ V+P
Sbjct: 454 MSPSKGDIACPKSFMAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPP 513
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+SP T +S + V+ +SP T +SP+ V+P +S T +
Sbjct: 514 ERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDL 566
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P +SP+ ++ + ++P ++P +SP+ V+P +SP T +SP+
Sbjct: 447 MEPPERDMSPSKGDIACPKSFMAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPS 506
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
V+P +S T +S + V+P +SP T +SP+ V+
Sbjct: 507 KGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVA 553
Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP T +SP+ V+P + P +SP+ ++ + ++P ++P +SP+
Sbjct: 426 MSPPETDLSPSKGAVAPPKRIMEPPERDMSPSKGDIACPKSFMAPPERDLAPPVRDMSPS 485
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
V+P +S T +S + V+P +SP T +SP+ V+
Sbjct: 486 KGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNVA 532
Score = 41.2 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 53/113 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P + P +SP+ ++ + ++P ++P +SP+ V+P +SP
Sbjct: 440 VAPPKRIMEPPERDMSPSKGDIACPKSFMAPPERDLAPPVRDMSPSKGNVAPPERDMSPP 499
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
T +SP+ V+ +S T +SP+ V+P +SP T +S + V
Sbjct: 500 ETDLSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNV 552
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P +SP T +SP+ V+P + P +SP+ ++ + ++P ++P
Sbjct: 421 PPERDMSPPETDLSPSKGAVAPPKRIMEPPERDMSPSKGDIACPKSFMAPPERDLAPPVR 480
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+SP+ V+ +S T +SP+ V+P +SP T +S + V
Sbjct: 481 DMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDLSPSKGNV 531
Score = 37.4 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP+ ++P + + P +SP T +SP+ V+P + P +SP+ ++
Sbjct: 405 MSPSKGDIAPPKSIMVPPERDMSPPETDLSPSKGAVAPPKRIMEPPERDMSPSKGDIACP 464
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ ++P ++ +S + V+P +SP T +SP+ V+
Sbjct: 465 KSFMAPPERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVA 511
Score = 37.0 bits (84), Expect = 5.9, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++P + + P +SP T +SP+ V+P + P +SP+ ++ + ++P
Sbjct: 412 IAPPKSIMVPPERDMSPPETDLSPSKGAVAPPKRIMEPPERDMSPSKGDIACPKSFMAPP 471
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++P +S + V+ +SP T +SP+ V+P +S T +
Sbjct: 472 ERDLAPPVRDMSPSKGNVAPPERDMSPPETDLSPSKGNVAPPERDMSPPETDL 524
>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1765
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQVSPAYTQVSP 116
SP+Y+ SP Y+ SP+ Y+ SP P SP+Y+PVSP Y+ SP SP
Sbjct: 1635 SPSYSPTSPGYSPASPSGGGAK-HYSPTSPNQFNSPTSPSYSPVSPGYSPASPNLHATSP 1693
Query: 117 AYTQVSPAYTQVS--LAYTQVSLAYTQVSPAYTQ--VSPAYTQVSPAYT 161
Y+ SP ++ S AY+ S A + SPA Q SP Y+ SP ++
Sbjct: 1694 NYSPASPKWSPTSPTGAYSPTSPALHR-SPAQNQSPTSPGYSPSSPTFS 1741
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSP--AYIPVSPAYTPVSPAYTQ--VSPAYTQ 113
VSP Y+ SP SP Y+ SP ++ SP AY P SPA SPA Q SP Y+
Sbjct: 1677 VSPGYSPASPNLHATSPNYSPASPKWSPTSPTGAYSPTSPALH-RSPAQNQSPTSPGYSP 1735
Query: 114 VSPAYTQVSPA 124
SP ++ +P
Sbjct: 1736 SSPTFSPRTPG 1746
>gi|424907572|ref|ZP_18331050.1| hypothetical protein A33K_18878 [Burkholderia thailandensis MSMB43]
gi|390927021|gb|EIP84435.1| hypothetical protein A33K_18878 [Burkholderia thailandensis MSMB43]
Length = 743
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + V+ + T S + T VS + T +S +
Sbjct: 557 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVATSMTGSSNSVTGVSNSMTGISSS 616
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+T VS + T S + T VSL+YT S +
Sbjct: 617 WTDVSMSTTGQSQSITGVSLSYTGTSNS 644
>gi|167572318|ref|ZP_02365192.1| Rhs element Vgr protein [Burkholderia oklahomensis C6786]
Length = 762
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY-------- 104
A+ +S ++T VS ++T VS +++ V+ ++T VS +++ V +T +S +
Sbjct: 557 ASFTGLSTSFTGVSTSFTGVSTSFSGVTTSFTGVSTSFVGVDTGFTGISTGFVGVETSIT 616
Query: 105 ------TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
T VS + T +S ++T VS + T S + T VSL+YT S +
Sbjct: 617 GSKNSVTGVSNSMTGISSSWTDVSMSTTGQSESITGVSLSYTGTSNS 663
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPA SP+Y+ SP Y+ SP++ P SP Y+P SP+++ SP Y+ SP++
Sbjct: 1600 SPTYSPTSPALNLTSPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPSSPRYSPTSPSF 1659
Query: 119 TQVSPAYTQV----SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SP Q+ S Y+ S + SP Y+ SPAY+ SPAY+ S AY
Sbjct: 1660 SPASPRSPQMASPTSPKYSPTSPMASPASPRYSPTSPAYSPASPAYSPTSPAY 1712
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 56 YTVSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP + SP Y+ SP + SP + SP + P SP + P SPAY+ SP Y Q
Sbjct: 1571 FNTSPTSPRYSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPVFAPTSPAYSPTSPGYQQ 1629
Query: 114 --VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ SP ++ S +Y+ S +++ SPA++ SP+Y+ SPA
Sbjct: 1630 SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1677
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 24/118 (20%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY----------- 104
+ SP ++ SP + SPAY+ SP Y Q P SP+Y+P SP +
Sbjct: 1600 FMSSPGFSPASPVFAPTSPAYSPTSPGYQQS-----PTSPSYSPTSPGFSPTSPSYSPTS 1654
Query: 105 ---TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ-VSPAYTQVSPAYTQVSP 158
+ SPA++ SP+Y+ SPA T L+ T SP YT SP ++ SP
Sbjct: 1655 PSFSPASPAFSPTSPSYSPTSPALG----GSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1708
>gi|156389629|ref|XP_001635093.1| predicted protein [Nematostella vectensis]
gi|156222183|gb|EDO43030.1| predicted protein [Nematostella vectensis]
Length = 104
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 45/101 (44%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
S AY S AY S AY S AY S AY+ S AY S AY S AY S
Sbjct: 2 NASVAYLNASVAYPNASVAYPNASVAYPNASVAYLNASVAYPNASVAYPNASVAYLNASV 61
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
AY S AY S+AY S+AY S Y S AY S
Sbjct: 62 AYLNASVAYLNASVAYLNASVAYLNASVEYLNASVAYLNAS 102
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 44/101 (43%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
S AY S AY S AY S AY S AY S AY S AY S AY S
Sbjct: 2 NASVAYLNASVAYPNASVAYPNASVAYPNASVAYLNASVAYPNASVAYPNASVAYLNASV 61
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
AY S+AY S+AY S AY S Y S AY S
Sbjct: 62 AYLNASVAYLNASVAYLNASVAYLNASVEYLNASVAYLNAS 102
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 43/99 (43%)
Query: 71 QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
S AY S AY S AY S AY S AY S AY S AY S AY S+
Sbjct: 2 NASVAYLNASVAYPNASVAYPNASVAYPNASVAYLNASVAYPNASVAYPNASVAYLNASV 61
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
AY S+AY S AY S AY S Y S AY
Sbjct: 62 AYLNASVAYLNASVAYLNASVAYLNASVEYLNASVAYLN 100
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 36/79 (45%)
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+ S AY S AY S AY S AY S AY S+AY S+AY S AY S
Sbjct: 1 LNASVAYLNASVAYPNASVAYPNASVAYPNASVAYLNASVAYPNASVAYPNASVAYLNAS 60
Query: 151 PAYTQVSPAYTQVSSAYTQ 169
AY S AY S AY
Sbjct: 61 VAYLNASVAYLNASVAYLN 79
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP + SP ++ SPA+ SPAY+P SP++ SP+Y+ SP ++ SP Y+ S +
Sbjct: 1597 SPRFMSTSPGFSPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPNF 1656
Query: 133 TQVSLAYTQVSPAYTQVSPA 152
+ S A++ SP Y+ SPA
Sbjct: 1657 SPASPAFSPSSPTYSPTSPA 1676
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS--------------LAY 139
SP + SP ++ SPA+ SPAY+ SP++ S +Y+ S +
Sbjct: 1597 SPRFMSTSPGFSPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPNF 1656
Query: 140 TQVSPAYTQVSPAYTQVSPA 159
+ SPA++ SP Y+ SPA
Sbjct: 1657 SPASPAFSPSSPTYSPTSPA 1676
>gi|260834147|ref|XP_002612073.1| hypothetical protein BRAFLDRAFT_195588 [Branchiostoma floridae]
gi|229297446|gb|EEN68082.1| hypothetical protein BRAFLDRAFT_195588 [Branchiostoma floridae]
Length = 210
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP Q SP + SP +PV P V PA V PA V PA
Sbjct: 106 SPGCCRPSPGCCRPSPGCCQPSPGCCRPSPGVLPVDPR---VLPAEPGVLPAEPGVLPAK 162
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+V PA V A V A V PA +V PA V PA
Sbjct: 163 PRVLPAEPGVLPAEPGVLPAEPGVLPAEPRVLPAEPGVLPAEPGCC 208
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQV---SPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V PA V PA V PA V PA V P +P P P P P +
Sbjct: 39 VLPAEPGVLPAEPGVLPAEPGVLPAEPGVLPAEPGVLPAEPGVLPAEPRVLPAEPGCCRP 98
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY----TQVSPAYTQVSSAYTQV 170
SP + SP + S + S Q SP + SP +V PA V A V
Sbjct: 99 SPGCCRPSPGCCRPSPGCCRPSPGCCQPSPGCCRPSPGVLPVDPRVLPAEPGVLPAEPGV 158
Query: 171 ILNKIR 176
+ K R
Sbjct: 159 LPAKPR 164
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
E V P + SP + SP + SP + SP SP SP V P
Sbjct: 85 EPRVLPAEPGCCRPSPGCCRPSPGCCRPSPGCCRPSPGCCQPSPGCCRPSPGVLPVDP-- 142
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+V PA V PA V A +V A V PA V PA V PA +V A V+
Sbjct: 143 -RVLPAEPGVLPAEPGVLPAKPRVLPAEPGVLPAEPGVLPAEPGVLPAEPRVLPAEPGVL 201
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 48/121 (39%), Gaps = 7/121 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPAYTQV 114
V PA V PA V PA V PA V PA +P P SP + SP +
Sbjct: 53 VLPAEPGVLPAEPGVLPAEPGVLPAEPGVLPAEPRVLPAEPGCCRPSPGCCRPSPGCCRP 112
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAY----TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + SP Q S + S +V PA V PA V PA +V A V
Sbjct: 113 SPGCCRPSPGCCQPSPGCCRPSPGVLPVDPRVLPAEPGVLPAEPGVLPAKPRVLPAEPGV 172
Query: 171 I 171
+
Sbjct: 173 L 173
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQV---SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V PA V PA V PA +V P + SP SP SP + SP Q
Sbjct: 67 VLPAEPGVLPAEPGVLPAEPRVLPAEPGCCRPSPGCCRPSPGCCRPSPGCCRPSPGCCQP 126
Query: 115 SPAYTQVSPAY----TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
SP + SP +V A V A V PA +V PA V PA V A V
Sbjct: 127 SPGCCRPSPGVLPVDPRVLPAEPGVLPAEPGVLPAKPRVLPAEPGVLPAEPGVLPAEPGV 186
Query: 171 ILNKIR 176
+ + R
Sbjct: 187 LPAEPR 192
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 31/119 (26%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
E V P P P P P +P P P P P
Sbjct: 22 EPGVLPAEPGVLHAEPGVLPAEPGVLPAEPGVLPAEPGVLPAEPGVLPAEPGVLPAEPGV 81
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
P P + S + S + SP + SP Q SP + S V
Sbjct: 82 LPAEPRVLPAEPGCCRPSPGCCRPSPGCCRPSPGCCRPSPGCCQPSPGCCRPSPGVLPV 140
Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 49/135 (36%), Gaps = 18/135 (13%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP----VSPAYTQVSPAYT 112
TV PA +V PA V PA V PA P + P P V PA V PA
Sbjct: 3 TVLPAEPRVLPAEPGVLPAEPGVLPA----EPGVLHAEPGVLPAEPGVLPAEPGVLPAEP 58
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQV----------SPAYTQVSPAYTQVSPAYTQ 162
V PA V PA V A V A +V SP + SP + SP +
Sbjct: 59 GVLPAEPGVLPAEPGVLPAEPGVLPAEPRVLPAEPGCCRPSPGCCRPSPGCCRPSPGCCR 118
Query: 163 VSSAYTQVILNKIRP 177
S Q RP
Sbjct: 119 PSPGCCQPSPGCCRP 133
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 14/106 (13%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA--------------YTQVSPAYTQ 113
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA Y+ SP+Y+
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ SP+Y+ S +Y+ S Y+ SP+Y+ SPAY+ SPA
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPA 1668
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SP+Y+ SP+Y+
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP+Y+ S +Y+ S +Y+ SP Y+ SP+Y+ SPAY+ S A
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPA 1668
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 31/94 (32%), Gaps = 49/94 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA------------------------------------ 82
SP Y+ SP Y+ SP Y+ SPA
Sbjct: 1575 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1634
Query: 83 -------------YTQVSPAYIPVSPAYTPVSPA 103
Y+ SP+Y P SPAY+P SPA
Sbjct: 1635 SPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPA 1668
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 20/134 (14%)
Query: 45 YLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA--------------- 89
Y+S A+ Y SPAY Q SP + SPAY SPA
Sbjct: 1541 YVSASPGRASPYATSPAYPQ-SPGSYNAGSGFAPASPAYKVTSPAPGGYGGAYQSPARSP 1599
Query: 90 ---YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP-A 145
Y P SPA+TP SP Y+ + + AY+ P+Y + Q + Y+ SP
Sbjct: 1600 GAQYSPTSPAFTPTSPGYSSATGPGRPGTGAYSPTGPSYNAAASPGYQSGINYSPGSPHT 1659
Query: 146 YTQVSPAYTQVSPA 159
Y+ SP +T SPA
Sbjct: 1660 YSPNSPVFTPRSPA 1673
>gi|301614441|ref|XP_002936707.1| PREDICTED: hypothetical protein LOC100491333 [Xenopus (Silurana)
tropicalis]
Length = 211
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y + +YT+ Y + +YT+ YI +YT Y + +YT+ Y +
Sbjct: 53 CYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIE 112
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGR 179
+YT+ Y + +YT+ Y + +YT+ Y + +YT+ I I R
Sbjct: 113 KDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDR 171
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y + +YT+ Y + +YT+ YI +YT Y + +YT+ Y +
Sbjct: 67 CYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIE 126
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGR 179
+YT+ Y + +YT+ Y + +YT+ Y + +YT+ I I R
Sbjct: 127 KDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDR 185
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y + +YT+ Y + +YT+ YI +YT Y + +YT+ Y +
Sbjct: 81 CYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIE 140
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGR 179
+YT+ Y + +YT+ Y + +YT+ Y + +YT+ I I R
Sbjct: 141 KDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDR 199
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y + +YT+ Y + +YT+ YI +YT Y + +YT+ Y +
Sbjct: 11 CYIEKDRSYTEQFWCYIEQDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIE 70
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGR 179
+YT+ Y + +YT+ Y + +YT+ Y + +YT+ I I R
Sbjct: 71 KDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDR 129
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYT-------QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+YT+ Y + +YT + +YT+ YI +YT Y + +Y
Sbjct: 16 DRSYTEQFWCYIEQDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSY 75
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
T+ Y + +YT+ Y + +YT+ Y + +YT+ Y + +YT+ I
Sbjct: 76 TEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQI 135
Query: 172 LNKIRPGR 179
I R
Sbjct: 136 WCYIEKDR 143
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 45/111 (40%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+YT+ Y + +YT+ Y + +Y Y +YT+ Y + +Y
Sbjct: 100 DRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSY 159
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
T+ Y + +YT+ Y + +YT+ Y + +YT+ Y +
Sbjct: 160 TEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQIWCYIEKDRSYTEQFWCYIE 210
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI--PVSPAYTPVSPAYTQVSPAYTQVSP 116
SP Y+ SP+Y+ SPA T+ Y+ SP P SP+Y+P SP Y+ SP SP
Sbjct: 1631 SPNYSPTSPSYSPASPAATR---HYSPTSPQQFASPTSPSYSPTSPTYSPASPNLHATSP 1687
Query: 117 AYTQVSPAYTQVS-LAYTQVSLAYTQ--------VSPAYTQVSPAYTQVSPA 159
+Y+ SP ++ S AY+ S ++ + SP Y+ SPA++ +P
Sbjct: 1688 SYSPASPTWSPTSPDAYSPTSPSFHRSPGQQASPTSPGYSPTSPAFSPRTPG 1739
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY--TQVSPAYTQVSPAYTQVSLAYTQVSL 137
SP Y+ SP+Y P SPA + Y+ SP + SP+Y+ SP Y+ S S
Sbjct: 1631 SPNYSPTSPSYSPASPA---ATRHYSPTSPQQFASPTSPSYSPTSPTYSPASPNLHATSP 1687
Query: 138 AYTQVSPAYTQVSP-AYTQVSPAY 160
+Y+ SP ++ SP AY+ SP++
Sbjct: 1688 SYSPASPTWSPTSPDAYSPTSPSF 1711
>gi|331225140|ref|XP_003325241.1| hypothetical protein PGTG_06778 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 697
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 55 VYTVSPA--YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
+Y V P YT++ YT+ Y +V+ YT+++ + + Y ++ YT+++ YT
Sbjct: 310 LYQVEPQTDYTELDTDYTEPRTDYMEVATDYTELATDHTEPATDYRELAKDYTELAKDYT 369
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+++ + +++ +T+ + YT+++ YT+++ YT+++ YT+ + A T+ S
Sbjct: 370 ELATDHAELATDHTEPATDYTELAKDYTELAKDYTELAKDYTEPTIADTEKS 421
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 64 QVSPA--YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
QV P YT++ YT+ Y +V+ Y ++ +T + Y +++ YT+++ YT++
Sbjct: 312 QVEPQTDYTELDTDYTEPRTDYMEVATDYTELATDHTEPATDYRELAKDYTELAKDYTEL 371
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + +++ +T+ + YT+++ YT+++ YT+++ YT+ + A T+
Sbjct: 372 ATDHAELATDHTEPATDYTELAKDYTELAKDYTELAKDYTEPTIADTE 419
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 78 QVSPA--YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
QV P YT++ Y Y V+ YT+++ +T+ + Y +++ YT+++ YT++
Sbjct: 312 QVEPQTDYTELDTDYTEPRTDYMEVATDYTELATDHTEPATDYRELAKDYTELAKDYTEL 371
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ + +++ +T+ + YT+++ YT+++ YT++
Sbjct: 372 ATDHAELATDHTEPATDYTELAKDYTELAKDYTEL 406
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 106 QVSPA--YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
QV P YT++ YT+ Y +V+ YT+++ +T+ + Y +++ YT+++ YT++
Sbjct: 312 QVEPQTDYTELDTDYTEPRTDYMEVATDYTELATDHTEPATDYRELAKDYTELAKDYTEL 371
Query: 164 SSAYTQVILNKIRPG 178
++ + ++ + P
Sbjct: 372 ATDHAELATDHTEPA 386
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
P+ SP Y+ SPA+ SP+ T SP Y P SP+Y+P SP
Sbjct: 1578 PSPMGASPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYSPTSP 1620
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
P+ SP Y+ SPA+ SP+ P SP Y+P SP+Y+ SP
Sbjct: 1578 PSPMGASPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYSPTSP 1620
Score = 44.3 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y+ SPA+ SP+ T SP Y+ SP+Y P SP Y+P
Sbjct: 1584 SPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYSPTSPNYSP 1624
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 28/124 (22%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP--------VSPAY 104
AT ++SP T P +P Y + P P+++P +SP Y
Sbjct: 1500 ATTPSMSPNNT---PWSQGATPGYPHSWSPGNALGTGMTPGGPSFSPSGASDASGMSPGY 1556
Query: 105 T-----------------QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYT 147
+ P+ SP Y+ SPA+ S + T S Y+ SP+Y+
Sbjct: 1557 SGWSPQPGSPSSPGPSMSPYIPSPMGASPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYS 1616
Query: 148 QVSP 151
SP
Sbjct: 1617 PTSP 1620
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 36/122 (29%)
Query: 59 SPAYTQVSPAYTQVSPA----YTQVSPA-----------------------YTQVSPAYI 91
SP Y+ SP+Y+ SPA Y+ SPA SP+Y
Sbjct: 1627 SPNYSPTSPSYSPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHSTSPSYS 1686
Query: 92 PVSPAYTPVSP-AYTQVSPAY--------TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
P SP ++P SP AY+ SP++ + SP Y+ SP+++ + + Q
Sbjct: 1687 PASPTWSPTSPDAYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQY 1746
Query: 143 SP 144
SP
Sbjct: 1747 SP 1748
Score = 44.7 bits (104), Expect = 0.026, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSP-AYTQVSPAYTQVSPA--YIPVSPAYTPVSPAYTQVSPAY 111
+++ SP+Y+ SP ++ SP AY+ SP++ + SP P SP Y+P SP+++ +P
Sbjct: 1678 LHSTSPSYSPASPTWSPTSPDAYSPTSPSFHR-SPGQQMSPTSPGYSPTSPSFSPRTPGR 1736
Query: 112 TQVSPAYTQVSP 123
+ Q SP
Sbjct: 1737 GPSGGSGDQYSP 1748
Score = 43.5 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 37/111 (33%)
Query: 84 TQVSPAYIPVSPAYTPVSPA----YTQVSPA-----------------------YTQVSP 116
+ SP Y P SP+Y+P SPA Y+ SPA SP
Sbjct: 1624 SPTSPNYSPTSPSYSPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHSTSP 1683
Query: 117 AYTQVSPAYTQVSL-AYTQVSLAY-----TQVSPAYTQVSPAYTQVSPAYT 161
+Y+ SP ++ S AY+ S ++ Q+SP SP Y+ SP+++
Sbjct: 1684 SYSPASPTWSPTSPDAYSPTSPSFHRSPGQQMSP----TSPGYSPTSPSFS 1730
Score = 37.7 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT---------QV 142
P SP Y+P SP SPA + Y+ SPA + + + +
Sbjct: 1625 PTSPNYSPTSP---SYSPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHST 1681
Query: 143 SPAYTQVSPAYTQVSP-AYTQVSSAYTQVILNKIRPGRESNSRSSAY 188
SP+Y+ SP ++ SP AY+ S ++ + PG++ + S Y
Sbjct: 1682 SPSYSPASPTWSPTSPDAYSPTSPSFHR------SPGQQMSPTSPGY 1722
>gi|148687325|gb|EDL19272.1| zonadhesin [Mus musculus]
Length = 5307
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T T+S T VSP T + VS T VSP V P T ++ YT+V T+
Sbjct: 735 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTE 794
Query: 114 VSPAYTQ---VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V+ +T+ VSP T V T +S T VSP T + VS T VS T V
Sbjct: 795 VTGVHTEVTNVSPEETSVPTEET-ISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSV 853
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSPAYTQ 113
V VSP T V P +S T VSP T + P +P VS T VSP T V P T
Sbjct: 723 VTNVSPEETSV-PTEETISTEVTTVSPEETTL-PTEVPTVSTEVTNVSPEETSVPPEETI 780
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++ YT+V T+V+ +T+V T VSP T V P +S T VS T +
Sbjct: 781 LTTLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTL 832
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 52 EATVYTVSPAY-TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
E T+YT P T+V+ +T+V T VSP T V P +S T VSP T +
Sbjct: 702 ETTLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTLPTE 756
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAY 167
VS T VSP T V T ++ YT+V T+V+ +T+ VSP T V +
Sbjct: 757 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEE 816
Query: 168 T 168
T
Sbjct: 817 T 817
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV---SPAYTQVSPAY 111
V TVS T VSP T V P T ++ YT+V V+ +T V SP T V P
Sbjct: 757 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSV-PTE 815
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP------AYTQVSPAYT 161
+S T VSP T + VS T VSP T V P T VSP T
Sbjct: 816 ETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTEITTVSPEET 871
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 42 LEDYLSTDEDEATVYTVSPAY--------TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV 93
L + + +E TV T P T + YT+V T+V+ +T+V+ V
Sbjct: 671 LTEVTTVSPEETTVPTEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVHTEVTN----V 726
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
SP T V P +S T VSP T + VS T VS T V P T ++ Y
Sbjct: 727 SPEETSV-PTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTTLY 785
Query: 154 TQVSPAYTQVSSAYTQV 170
T+V T+V+ +T+V
Sbjct: 786 TEVPTVPTEVTGVHTEV 802
Score = 40.0 bits (92), Expect = 0.64, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAY---TQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
V TVSP +SP T+V+P T V+ AY T SP V P T ++ T VSP
Sbjct: 626 VITVSPEEI-ISP--TEVTPVPTDVTAAYVEATNASPEETSVPPEVTILTEV-TTVSPEE 681
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAYT 168
T V T+V + + T + YT+V T+V+ +T+ VSP T V + T
Sbjct: 682 TTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEET 738
Score = 36.2 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT- 112
T T+S T VSP T + VS T VSP V P T ++ T VSP T
Sbjct: 814 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILT-EITTVSPEETV 872
Query: 113 ---QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + T+V +V+ T + T+V T+++ +T+V+ + + +S T+
Sbjct: 873 FPIEGTTLPTEVLTVPIEVTTFPTGETTVPTEVPTVSTEMTGVHTEVTTVFPEETSIPTE 932
Query: 170 V 170
V
Sbjct: 933 V 933
>gi|13634073|sp|O88799.1|ZAN_MOUSE RecName: Full=Zonadhesin; Flags: Precursor
gi|3327421|gb|AAC26680.1| zonadhesin [Mus musculus]
Length = 5376
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T T+S T VSP T + VS T VSP V P T ++ YT+V T+
Sbjct: 804 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTE 863
Query: 114 VSPAYTQ---VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V+ +T+ VSP T V T +S T VSP T + VS T VS T V
Sbjct: 864 VTGVHTEVTNVSPEETSVPTEET-ISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSV 922
Score = 50.1 bits (118), Expect = 6e-04, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP T V P +S T VSP T + VS T VSP T V P T +
Sbjct: 792 VTNVSPEETSV-PTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETIL 850
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ YT+V T+V+ +T+V T VSP T V P +S T VS T +
Sbjct: 851 TTLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTL 901
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV---SPAYTQVSPAY 111
V TVS T VSP T V P T ++ YT+V V+ +T V SP T V P
Sbjct: 826 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSV-PTE 884
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP------AYTQVSPAYT 161
+S T VSP T + VS T VSP T V P T VSP T
Sbjct: 885 ETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTEITTVSPEET 940
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 52 EATVYTVSPAY-TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
E T+YT P T+V+ +T+V T VSP T V P +S T VSP T +
Sbjct: 771 EITLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTLPTE 825
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAY 167
VS T VSP T V T ++ YT+V T+V+ +T+ VSP T V +
Sbjct: 826 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEE 885
Query: 168 T 168
T
Sbjct: 886 T 886
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 43 EDYLSTDEDEAT-VYTVSPAYTQV-------------SPA-----YTQVSPAYTQVSPAY 83
E + T+E +T V TVSP T V SP YT+V T+V+ +
Sbjct: 730 ETSVPTEETISTEVTTVSPEETTVPTEVPIVLIEATASPTGEITLYTEVPTVPTEVTGVH 789
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T+V+ VSP T V P +S T VSP T + VS T VS T V
Sbjct: 790 TEVTN----VSPEETSV-PTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVP 844
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQV 170
P T ++ YT+V T+V+ +T+V
Sbjct: 845 PEETILTTLYTEVPTVPTEVTGVHTEV 871
Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV-------SPA-----YTPVSP 102
V VSP T V P +S T VSP T V P +P+ SP YT V
Sbjct: 723 VTNVSPEETSV-PTEETISTEVTTVSPEETTV-PTEVPIVLIEATASPTGEITLYTEVPT 780
Query: 103 AYTQVSPAYTQV----------------SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
T+V+ +T+V S T VSP T + VS T VSP
Sbjct: 781 VPTEVTGVHTEVTNVSPEETSVPTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEE 840
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQV 170
T V P T ++ YT+V + T+V
Sbjct: 841 TSVPPEETILTTLYTEVPTVPTEV 864
Score = 43.5 bits (101), Expect = 0.062, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 58 VSPAYTQVSPAYT------QVSP----AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
VSP T + P T VSP + T+V+P T V+ AY+ + A SP T V
Sbjct: 609 VSPKETSIPPEVTIPTEVITVSPEEIISPTEVTPVPTDVTAAYVEATNA----SPEETSV 664
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P T ++ T VSP T V T+V + + + T + YT+V T+V+ +
Sbjct: 665 PPEVTILTEV-TTVSPEETTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVH 720
Query: 168 TQV 170
T+V
Sbjct: 721 TEV 723
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAY---TQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
V TVSP +SP T+V+P T V+ AY T SP V P T ++ T VSP
Sbjct: 626 VITVSPEEI-ISP--TEVTPVPTDVTAAYVEATNASPEETSVPPEVTILTEV-TTVSPEE 681
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAYT 168
T V T+V + + T + YT+V T+V+ +T+ VSP T V + T
Sbjct: 682 TTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEET 738
Score = 36.2 bits (82), Expect = 9.1, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT- 112
T T+S T VSP T + VS T VSP V P T ++ T VSP T
Sbjct: 883 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILT-EITTVSPEETV 941
Query: 113 ---QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + T+V +V+ T + T+V T+++ +T+V+ + + +S T+
Sbjct: 942 FPIEGTTLPTEVLTVPIEVTTFPTGETTVPTEVPTVSTEMTGVHTEVTTVFPEETSIPTE 1001
Query: 170 V 170
V
Sbjct: 1002 V 1002
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
Y SPA SP Y SPAY SP+ T SP Y P SP+Y+P SP
Sbjct: 1573 YLPSPA----SPTYAPSSPAYAPTSPSLTPSSPHYSPTSPSYSPTSP 1615
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
SPA SP Y SPAY P SP+ TP SP Y+ SP+Y+ SP
Sbjct: 1576 SPA----SPTYAPSSPAYAPTSPSLTPSSPHYSPTSPSYSPTSP 1615
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
SPA SP Y P SPAY P SP+ T SP Y+ SP+Y+ SP
Sbjct: 1576 SPA----SPTYAPSSPAYAPTSPSLTPSSPHYSPTSPSYSPTSP 1615
Score = 43.5 bits (101), Expect = 0.061, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y SPAY SP+ T SP Y+ SP+Y P SP Y+P
Sbjct: 1579 SPTYAPSSPAYAPTSPSLTPSSPHYSPTSPSYSPTSPHYSP 1619
>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
Length = 1751
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 48/129 (37%)
Query: 59 SPAYTQVSPAYTQVSPA----YTQVSPAYTQ-----------------------VSPAYI 91
SP Y+ SP+Y+ SPA Y+ SPA SP+Y
Sbjct: 1624 SPNYSPTSPSYSPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHATSPSYS 1683
Query: 92 PVSPAYTPVSP-AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
P SP ++P SP AY+ SP++ Q SP Q+SP SP Y+ S
Sbjct: 1684 PASPTWSPTSPDAYSPTSPSF-QRSPG-QQMSP------------------TSPGYSPTS 1723
Query: 151 PAYTQVSPA 159
P+++ +P
Sbjct: 1724 PSFSPRTPG 1732
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSP-AYTQVSPAYTQVSPA--YIPVSPAYTPVSPAYTQVSPAY 111
++ SP+Y+ SP ++ SP AY+ SP++ Q SP P SP Y+P SP+++ +P
Sbjct: 1675 LHATSPSYSPASPTWSPTSPDAYSPTSPSF-QRSPGQQMSPTSPGYSPTSPSFSPRTPGR 1733
Query: 112 TQVSPAYTQVSP 123
Q SP
Sbjct: 1734 GPAGGNGDQYSP 1745
Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 31/108 (28%)
Query: 84 TQVSPAYIPVSPAYTPVSPA----YTQVSPAYTQ-----------------------VSP 116
+ SP Y P SP+Y+P SPA Y+ SPA SP
Sbjct: 1621 SPTSPNYSPTSPSYSPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHATSP 1680
Query: 117 AYTQVSPAYTQVSL-AYTQVSLAYTQVSPA--YTQVSPAYTQVSPAYT 161
+Y+ SP ++ S AY+ S ++ Q SP + SP Y+ SP+++
Sbjct: 1681 SYSPASPTWSPTSPDAYSPTSPSF-QRSPGQQMSPTSPGYSPTSPSFS 1727
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ---------V 142
P SP Y+P SP SPA + Y+ SPA + + + +
Sbjct: 1622 PTSPNYSPTSP---SYSPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHAT 1678
Query: 143 SPAYTQVSPAYTQVSP-AYTQVSSAYTQVILNKIRPGRESNSRSSAY 188
SP+Y+ SP ++ SP AY+ S ++ + PG++ + S Y
Sbjct: 1679 SPSYSPASPTWSPTSPDAYSPTSPSFQR------SPGQQMSPTSPGY 1719
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPKYTAVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1707 CYSPTSPSYSPTSPKYTAVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1765
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 50.8 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
P+ SP Y+ SPA+ SP+ T SP Y P SP+Y+P SP
Sbjct: 1577 PSPMGASPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYSPTSP 1619
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
P+ SP Y+ SPA+ SP+ P SP Y+P SP+Y+ SP
Sbjct: 1577 PSPMGASPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYSPTSP 1619
Score = 43.9 bits (102), Expect = 0.044, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y+ SPA+ SP+ T SP Y+ SP+Y P SP Y+P
Sbjct: 1583 SPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYSPTSPNYSP 1623
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 28/124 (22%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP--------VSPAY 104
AT ++SP T P +P Y + P P+++P +SP Y
Sbjct: 1499 ATTPSMSPNNT---PWSQGATPGYPHSWSPGNALGTGMTPGGPSFSPSGASDASGMSPGY 1555
Query: 105 T-----------------QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYT 147
+ P+ SP Y+ SPA+ S + T S Y+ SP+Y+
Sbjct: 1556 SGWSPQPGSPSSPGPSMSPYIPSPMGASPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYS 1615
Query: 148 QVSP 151
SP
Sbjct: 1616 PTSP 1619
>gi|256665241|ref|NP_035871.2| zonadhesin precursor [Mus musculus]
Length = 5420
Score = 50.4 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T T+S T VSP T + VS T VSP V P T ++ YT+V T+
Sbjct: 735 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTE 794
Query: 114 VSPAYTQ---VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V+ +T+ VSP T V T +S T VSP T + VS T VS T V
Sbjct: 795 VTGVHTEVTNVSPEETSVPTEET-ISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSV 853
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 52 EATVYTVSPAY-TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
E T+YT P T+V+ +T+V T VSP T V P +S T VSP T +
Sbjct: 702 ETTLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTLPTE 756
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAY 167
VS T VSP T V T ++ YT+V T+V+ +T+ VSP T V +
Sbjct: 757 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEE 816
Query: 168 T 168
T
Sbjct: 817 T 817
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP T V P +S T VSP T + VS T VSP T V P T +
Sbjct: 723 VTNVSPEETSV-PTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETIL 781
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ YT+V T+V+ +T+V T VSP T V P +S T VS T +
Sbjct: 782 TTLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTL 832
Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV---SPAYTQVSPAY 111
V TVS T VSP T V P T ++ YT+V V+ +T V SP T V P
Sbjct: 757 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSV-PTE 815
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP------AYTQVSPAYT 161
+S T VSP T + VS T VSP T V P T VSP T
Sbjct: 816 ETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTEITTVSPEET 871
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
YT+V T+V+ +T+V+ VSP T V P +S T VSP T + V
Sbjct: 706 YTEVPTVPTEVTGVHTEVTN----VSPEETSV-PTEETISTEVTTVSPEETTLPTEVPTV 760
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
S T VS T V P T ++ YT+V T+V+ +T+V
Sbjct: 761 STEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEV 802
Score = 40.0 bits (92), Expect = 0.78, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAY---TQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
V TVSP +SP T+V+P T V+ AY T SP V P T ++ T VSP
Sbjct: 626 VITVSPEEI-ISP--TEVTPVPTDVTAAYVEATNASPEETSVPPEVTILTEV-TTVSPEE 681
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAYT 168
T V T+V + + T + YT+V T+V+ +T+ VSP T V + T
Sbjct: 682 TTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEET 738
Score = 36.2 bits (82), Expect = 9.9, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT- 112
T T+S T VSP T + VS T VSP V P T ++ T VSP T
Sbjct: 814 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILT-EITTVSPEETV 872
Query: 113 ---QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + T+V +V+ T + T+V T+++ +T+V+ + + +S T+
Sbjct: 873 FPIEGTTLPTEVLTVPIEVTTFPTGETTVPTEVPTVSTEMTGVHTEVTTVFPEETSIPTE 932
Query: 170 V 170
V
Sbjct: 933 V 933
>gi|322692030|ref|YP_004221600.1| ABC transporter permease [Bifidobacterium longum subsp. longum JCM
1217]
gi|320456886|dbj|BAJ67508.1| ABC transporter permease component [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 1235
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 317 QKARRQQIVSSAQRKLDDAKDEAN-EQLDEAQKQIDDNWAELEANKTTLQDSRTELENNR 375
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ Q++ A Q+ A T+++
Sbjct: 376 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLTSARKQLDAAQTELT 435
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 436 ANRTKIEQGITQIDQGMAQI 455
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 356 ELEANKTTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 415
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Q++ A Q+ A T+++ T++ TQ+ Q+ + + A
Sbjct: 416 GKAQLTSARKQLDAAQTELTANRTKIEQGITQIDQGMAQIDQMLSMIQQA 465
>gi|344297848|ref|XP_003420608.1| PREDICTED: rho guanine nucleotide exchange factor 5 [Loxodonta
africana]
Length = 1672
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
+ ++ Y PA +Q +PA Q PA Q +PA Q +PA P +PA +PA Q
Sbjct: 162 SSQEHIACYQEIPASSQETPASNQEPPAANQETPAANQETPASNPETPASNQETPAANQE 221
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
+PA Q +P Q PA T++ A +Q +
Sbjct: 222 TPAANQETPEANQEIPA-TELGAANSQAKM 250
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
PA + +PA Q PA Q +PA Q +PA + A Q + A Q +PA Q +P
Sbjct: 174 PASSQETPASNQEPPAANQETPAANQETPASNPETPASNQETPAANQETPAANQETPEAN 233
Query: 155 QVSPAYTQVSSAYTQVIL 172
Q PA T++ +A +Q +
Sbjct: 234 QEIPA-TELGAANSQAKM 250
>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV---SPAYTQVSPAYTQVSPA 117
AY+ SP Y+ SP+Y+ SP Y+ SP+Y P S Y+P SP+ ++SP Y+Q SP
Sbjct: 1388 AYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRLSP-YSQTSPN 1446
Query: 118 YTQVSPAY 125
Y+ SP Y
Sbjct: 1447 YSPTSPTY 1454
>gi|449274569|gb|EMC83663.1| DNA-directed RNA polymerase II subunit RPB1, partial [Columba
livia]
Length = 146
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP ++SP +SP +VSP ++SP + +SP +SP +VSP +SP
Sbjct: 22 VSPTPPEMSPGTPGMSPRTPEVSPTPLEMSPNPLEMSPTTPELSPGTPEVSPTPPGMSPN 81
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+++SP +S +VS +VSP +++ P +++SP +QVS
Sbjct: 82 SSEMSPGTQGMSPQTIEVSPTPPEVSPNSSEMPPNPSEMSPNPSQVSPG 130
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 58/107 (54%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
QVSP ++SP +SP +VSP + +SP +SP ++SP +VSP +SP
Sbjct: 21 QVSPTPPEMSPGTPGMSPRTPEVSPTPLEMSPNPLEMSPTTPELSPGTPEVSPTPPGMSP 80
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+++S +S +VSP +VSP +++ P +++S +QV
Sbjct: 81 NSSEMSPGTQGMSPQTIEVSPTPPEVSPNSSEMPPNPSEMSPNPSQV 127
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP +VSP ++SP ++SP ++SP VSP +SP +++SP +SP
Sbjct: 36 MSPRTPEVSPTPLEMSPNPLEMSPTTPELSPGTPEVSPTPPGMSPNSSEMSPGTQGMSPQ 95
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+VSP +VS +++ +++SP +QVSP +SP +VS
Sbjct: 96 TIEVSPTPPEVSPNSSEMPPNPSEMSPNPSQVSPGTQGMSPTPPEVS 142
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP QVSP SP QVSP ++SP +SP VSP ++SP ++SP
Sbjct: 1 MSPNPPQVSPGTQGTSPWTLQVSPTPPEMSPGTPGMSPRTPEVSPTPLEMSPNPLEMSPT 60
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNK 174
++SP +VS +S +++SP +SP +VSP +VS +++ N
Sbjct: 61 TPELSPGTPEVSPTPPGMSPNSSEMSPGTQGMSPQTIEVSPTPPEVSPNSSEMPPNP 117
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP ++SP ++SP ++SP +VSP +SP + +SP +SP +VSP
Sbjct: 43 VSPTPLEMSPNPLEMSPTTPELSPGTPEVSPTPPGMSPNSSEMSPGTQGMSPQTIEVSPT 102
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+VSP +++ +++S +QVSP +SP +VSP
Sbjct: 103 PPEVSPNSSEMPPNPSEMSPNPSQVSPGTQGMSPTPPEVSP 143
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP SP QVSP ++SP +SP VSP +SP ++SP ++SP
Sbjct: 8 VSPGTQGTSPWTLQVSPTPPEMSPGTPGMSPRTPEVSPTPLEMSPNPLEMSPTTPELSPG 67
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN--KI 175
+VSP +S +++S +SP +VSP +VSP +++ +++ N ++
Sbjct: 68 TPEVSPTPPGMSPNSSEMSPGTQGMSPQTIEVSPTPPEVSPNSSEMPPNPSEMSPNPSQV 127
Query: 176 RPG 178
PG
Sbjct: 128 SPG 130
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
T E T +SP ++SP ++SP +VSP +SP +SP +SP +V
Sbjct: 40 TPEVSPTPLEMSPNPLEMSPTTPELSPGTPEVSPTPPGMSPNSSEMSPGTQGMSPQTIEV 99
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP +VSP +++ P +++S +QVS +SP +VSP
Sbjct: 100 SPTPPEVSPNSSEMPPNPSEMSPNPSQVSPGTQGMSPTPPEVSP 143
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI----------------PVSPAYTPVSP 102
+P+Y+ SP Y+ SP Y+ SPAY+Q Y P SP YTP SP
Sbjct: 1726 TPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSP 1784
Query: 103 AYTQVSPAYTQVSPAY----------TQVSPA---YTQVSLAYTQVSLAYTQVSPAYTQV 149
Y+ SP Y+ SP Y Q SP Y+ S Y+ Y+ S Y+
Sbjct: 1785 QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPT 1844
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP YT + Y+ S Y+
Sbjct: 1845 SPTYTPTARNYSPTSPMYS 1863
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP Y+ SP Y+ SP Y SP Y +P + P S Y+P + Y+ SP Y+ S
Sbjct: 1595 SPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI----------------PVSPAYTPVSP 102
+P+Y+ SP Y+ SP Y+ SPAY+Q Y P SP YTP SP
Sbjct: 1726 TPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSP 1784
Query: 103 AYTQVSPAYTQVSPAY----------TQVSPA---YTQVSLAYTQVSLAYTQVSPAYTQV 149
Y+ SP Y+ SP Y Q SP Y+ S Y+ Y+ S Y+
Sbjct: 1785 QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPT 1844
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP YT + Y+ S Y+
Sbjct: 1845 SPTYTPTARNYSPTSPMYS 1863
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
SP Y+ SP Y+ SP Y SP Y +P + P S Y+P + Y+ SP Y+ S
Sbjct: 1595 SPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1658 YSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1717
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1718 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1777
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1778 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1808
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT +P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1634 SPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSY 1692
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1693 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1752
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1753 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1785
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 33/143 (23%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV---- 114
SP Y+ SP Y+ SP Y SP Y +P + P S Y+P + Y+ SP Y+
Sbjct: 1517 SPNYSPSSPNYSPTSPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFP 1576
Query: 115 -SPAYTQVSPAYTQVSLAYTQVS----------------------------LAYTQVSPA 145
SP++ AY+ S Y+ SP+
Sbjct: 1577 SSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPS 1636
Query: 146 YTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT +P+Y+ S Y+
Sbjct: 1637 YSPTSPNYTPATPSYSPTSPNYS 1659
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT +P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1629 CYSPTSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSP 1687
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1688 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1722
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 48/146 (32%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS-----PAY-----TQVS 108
SP Y SP Y +P + S Y+ + Y P SP Y+P S P++ S
Sbjct: 1531 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1590
Query: 109 PA-------------------------------------YTQVSPAYTQVSPAYTQVSLA 131
P Y+ SP+Y+ SP YT + +
Sbjct: 1591 PGNAYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPS 1650
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVS 157
Y+ S Y+ SP Y+ SPAY+Q
Sbjct: 1651 YSPTSPNYS-ASPHYSPASPAYSQTG 1675
>gi|126443100|ref|YP_001061796.1| Rhs element Vgr protein [Burkholderia pseudomallei 668]
gi|126222591|gb|ABN86096.1| Rhs element Vgr protein [Burkholderia pseudomallei 668]
Length = 762
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + VS + T S + T VS + T +S +
Sbjct: 576 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSS 635
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+ VS + T S + T VSL+YT S +
Sbjct: 636 WKDVSMSTTGQSESITGVSLSYTGTSNS 663
>gi|53721560|ref|YP_110545.1| hypothetical protein BPSS0524 [Burkholderia pseudomallei K96243]
gi|67642640|ref|ZP_00441394.1| Rhs element Vgr protein [Burkholderia mallei GB8 horse 4]
gi|76819730|ref|YP_337233.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710b]
gi|77358915|ref|YP_338356.1| Rhs element Vgr protein [Burkholderia mallei ATCC 23344]
gi|121597388|ref|YP_990345.1| Rhs element Vgr protein [Burkholderia mallei SAVP1]
gi|124382625|ref|YP_001024843.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10229]
gi|126445908|ref|YP_001079185.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10247]
gi|126456731|ref|YP_001074745.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106a]
gi|134283017|ref|ZP_01769719.1| Rhs element Vgr protein [Burkholderia pseudomallei 305]
gi|167003572|ref|ZP_02269358.1| Rhs element Vgr protein [Burkholderia mallei PRL-20]
gi|226196586|ref|ZP_03792167.1| Rhs element Vgr protein [Burkholderia pseudomallei Pakistan 9]
gi|237508439|ref|ZP_04521154.1| Rhs element Vgr protein [Burkholderia pseudomallei MSHR346]
gi|242311583|ref|ZP_04810600.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106b]
gi|254177277|ref|ZP_04883933.1| Rhs element Vgr protein [Burkholderia mallei ATCC 10399]
gi|254185458|ref|ZP_04892046.1| Rhs element Vgr protein [Burkholderia pseudomallei 1655]
gi|254187344|ref|ZP_04893858.1| Rhs element Vgr protein [Burkholderia pseudomallei Pasteur 52237]
gi|254203181|ref|ZP_04909543.1| Rhs element Vgr protein [Burkholderia mallei FMH]
gi|254208516|ref|ZP_04914865.1| Rhs element Vgr protein [Burkholderia mallei JHU]
gi|254263007|ref|ZP_04953872.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710a]
gi|254355985|ref|ZP_04972262.1| Rhs element Vgr protein [Burkholderia mallei 2002721280]
gi|386864294|ref|YP_006277242.1| type VI secretion system [Burkholderia pseudomallei 1026b]
gi|403522037|ref|YP_006657606.1| Rhs element Vgr protein [Burkholderia pseudomallei BPC006]
gi|52211974|emb|CAH37981.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|66967713|gb|AAY59269.1| Rhs element Vgr protein [Burkholderia mallei ATCC 23344]
gi|76584203|gb|ABA53677.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710b]
gi|121225186|gb|ABM48717.1| Rhs element Vgr protein [Burkholderia mallei SAVP1]
gi|124290645|gb|ABM99914.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10229]
gi|126230499|gb|ABN93912.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106a]
gi|126238762|gb|ABO01874.1| Rhs element Vgr protein [Burkholderia mallei NCTC 10247]
gi|134245665|gb|EBA45757.1| Rhs element Vgr protein [Burkholderia pseudomallei 305]
gi|147746226|gb|EDK53304.1| Rhs element Vgr protein [Burkholderia mallei FMH]
gi|147751203|gb|EDK58271.1| Rhs element Vgr protein [Burkholderia mallei JHU]
gi|148024968|gb|EDK83137.1| Rhs element Vgr protein [Burkholderia mallei 2002721280]
gi|157935026|gb|EDO90696.1| Rhs element Vgr protein [Burkholderia pseudomallei Pasteur 52237]
gi|160698317|gb|EDP88287.1| Rhs element Vgr protein [Burkholderia mallei ATCC 10399]
gi|184209693|gb|EDU06736.1| Rhs element Vgr protein [Burkholderia pseudomallei 1655]
gi|225931462|gb|EEH27468.1| Rhs element Vgr protein [Burkholderia pseudomallei Pakistan 9]
gi|235000644|gb|EEP50068.1| Rhs element Vgr protein [Burkholderia pseudomallei MSHR346]
gi|238523827|gb|EEP87263.1| Rhs element Vgr protein [Burkholderia mallei GB8 horse 4]
gi|242134822|gb|EES21225.1| Rhs element Vgr protein [Burkholderia pseudomallei 1106b]
gi|243060905|gb|EES43091.1| Rhs element Vgr protein [Burkholderia mallei PRL-20]
gi|254214009|gb|EET03394.1| Rhs element Vgr protein [Burkholderia pseudomallei 1710a]
gi|385661422|gb|AFI68844.1| type VI secretion system [Burkholderia pseudomallei 1026b]
gi|403077104|gb|AFR18683.1| Rhs element Vgr protein [Burkholderia pseudomallei BPC006]
Length = 762
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + VS + T S + T VS + T +S +
Sbjct: 576 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSS 635
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+ VS + T S + T VSL+YT S +
Sbjct: 636 WKDVSMSTTGQSESITGVSLSYTGTSNS 663
>gi|419846498|ref|ZP_14369741.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 1-6B]
gi|419854157|ref|ZP_14376947.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 44B]
gi|386413930|gb|EIJ28504.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 1-6B]
gi|386418035|gb|EIJ32504.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 44B]
Length = 1227
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
L +DEA + A Q+ + ++ T + + T++ ++ ++
Sbjct: 324 LDDAQDEAN-EQLDEAQKQIDDNWAELEANETTLQDSRTELENNRTTITDGERQLADGRA 382
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
Q++ A Q++ Q++ A TQ+ Q++ A Q+ A T+++ T++ TQ+
Sbjct: 383 QIASARQQIAQGRQQIAEARTQLESGKAQLTSARKQLDAAQTELTANRTKIEQGITQIDQ 442
Query: 166 AYTQV 170
Q+
Sbjct: 443 GVAQI 447
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 348 ELEANETTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 407
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Q++ A Q+ A T+++ T++ TQ+ Q+ + + A
Sbjct: 408 GKAQLTSARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQA 457
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T + + T++ T ++ Q++ ++ A ++ Q++ A TQ+ Q++
Sbjct: 354 TTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLT 413
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
A Q+ A T+++ T++ TQ+ Q+ + + A +L ++ P + N
Sbjct: 414 SARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQADN--LLAQLDPNIDFN 471
Query: 183 S 183
S
Sbjct: 472 S 472
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1707 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 1765
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
>gi|227546897|ref|ZP_03976946.1| antimicrobial peptide ABC superfamily ATP binding cassette
transporter, permease protein [Bifidobacterium longum
subsp. longum ATCC 55813]
gi|227212577|gb|EEI80465.1| antimicrobial peptide ABC superfamily ATP binding cassette
transporter, permease protein [Bifidobacterium longum
subsp. infantis ATCC 55813]
Length = 1253
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 335 QKARRQQIVSSAQRKLDDAKDEAN-EQLDEAQKQIDDNWAELEANKTTLQDSRTELENNR 393
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ Q++ A Q+ A T+++
Sbjct: 394 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLTSARKQLDAAQTELT 453
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 454 ANRTKIEQGITQIDQGMAQI 473
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 374 ELEANKTTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 433
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Q++ A Q+ A T+++ T++ TQ+ Q+ Q+ P Q ++ Q
Sbjct: 434 GKAQLTSARKQLDAAQTELTANRTKIEQGITQIDQGMAQID----QMLPMIQQANNLLAQ 489
Query: 170 V 170
+
Sbjct: 490 L 490
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1314 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1358
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SP Y+ S
Sbjct: 1309 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1356
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
E + ++P+ + ++ Y+ SP Y+ SP Y+ SP Y P SP Y+P SP SP+
Sbjct: 1294 EGLDFGMTPSRSPIT-GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSP---TYSPS- 1348
Query: 112 TQVSPAYTQVSPA 124
SP Y+ SPA
Sbjct: 1349 ---SPGYSPTSPA 1358
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1707 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1765
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT +P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 33/143 (23%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV---- 114
SP Y+ SP Y+ SP Y SP Y +P + P S Y+P + Y+ SP Y+
Sbjct: 1595 SPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFP 1654
Query: 115 -SPAYTQVSPAYTQVSLAYTQVS----------------------------LAYTQVSPA 145
SP++ AY+ S Y+ SP+
Sbjct: 1655 SSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPS 1714
Query: 146 YTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT +P+Y+ S Y+
Sbjct: 1715 YSPTSPNYTPATPSYSPTSPNYS 1737
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT +P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1707 CYSPTSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSP 1765
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
>gi|254198930|ref|ZP_04905348.1| Rhs element Vgr protein [Burkholderia pseudomallei S13]
gi|254296666|ref|ZP_04964120.1| Rhs element Vgr protein [Burkholderia pseudomallei 406e]
gi|157806659|gb|EDO83829.1| Rhs element Vgr protein [Burkholderia pseudomallei 406e]
gi|169657102|gb|EDS88496.1| Rhs element Vgr protein [Burkholderia pseudomallei S13]
Length = 762
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + VS + T S + T VS + T +S +
Sbjct: 576 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSS 635
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+ VS + T S + T VSL+YT S +
Sbjct: 636 WKDVSMSTTGQSESITGVSLSYTGTSNS 663
>gi|384200593|ref|YP_005586340.1| ABC transporter permease [Bifidobacterium longum subsp. longum KACC
91563]
gi|338753600|gb|AEI96589.1| ABC transporter permease [Bifidobacterium longum subsp. longum KACC
91563]
Length = 1206
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 288 QKARRQQIVSSAQRKLDDAQDEAN-EQLDEAQKQIDDNWAELEANKTTLQDSRTELENNR 346
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ Q++ A Q+ A T+++
Sbjct: 347 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLTSARKQLDAAQTELT 406
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 407 ANRTKIEQGITQIDQGVAQI 426
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 327 ELEANKTTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 386
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Q++ A Q+ A T+++ T++ TQ+ Q+ + + A
Sbjct: 387 GKAQLTSARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQA 436
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T + + T++ T ++ Q++ ++ A ++ Q++ A TQ+ Q++
Sbjct: 333 TTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLT 392
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
A Q+ A T+++ T++ TQ+ Q+ + + A +L ++ P + N
Sbjct: 393 SARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQADN--LLAQLDPNIDFN 450
Query: 183 S 183
S
Sbjct: 451 S 451
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1734 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1793
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1794 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1853
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1854 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1884
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1710 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1768
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1769 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1828
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1829 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1861
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1705 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 1763
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1764 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1798
>gi|217424658|ref|ZP_03456156.1| Rhs element Vgr protein [Burkholderia pseudomallei 576]
gi|217392582|gb|EEC32606.1| Rhs element Vgr protein [Burkholderia pseudomallei 576]
Length = 762
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T V ++T VS + V ++T V+ + + VS + T S + T VS + T +S +
Sbjct: 576 VSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSS 635
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+ VS + T S + T VSL+YT S +
Sbjct: 636 WKDVSMSTTGQSESITGVSLSYTGTSNS 663
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 46/157 (29%)
Query: 55 VYTVSPAYTQVSPAYTQV-----SPA------------------------------YTQV 79
VY+ +P + Q SP++ SP Y+
Sbjct: 1646 VYSPTPNF-QSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPT 1704
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y+ SP+Y P SP YTPV+P+Y+ SP Y+ SP Y+ SPAY+Q + Y+ S Y
Sbjct: 1705 SPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTY 1763
Query: 140 TQV---------SPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SP YT SP Y+ SP Y+ S Y
Sbjct: 1764 SPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
>gi|419850667|ref|ZP_14373647.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 35B]
gi|419851575|ref|ZP_14374501.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 2-2B]
gi|386408509|gb|EIJ23419.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 35B]
gi|386413292|gb|EIJ27905.1| efflux ABC transporter, permease protein [Bifidobacterium longum
subsp. longum 2-2B]
Length = 1224
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 35 EKFKRKDL----EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
+K +R+ + + L +DEA + A Q+ + ++ T + + T++
Sbjct: 306 QKARRQQIVSSAQRKLDDAQDEAN-EQLDEAQKQIDDNWAELEANETTLQDSRTELENNR 364
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ ++ Q++ A Q++ Q++ A TQ+ Q++ A Q+ A T+++
Sbjct: 365 TTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLTSARKQLDAAQTELT 424
Query: 151 PAYTQVSPAYTQVSSAYTQV 170
T++ TQ+ Q+
Sbjct: 425 ANRTKIEQGITQIDQGVAQI 444
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 49/110 (44%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E EA T+ + T++ T ++ Q++ Q++ A ++ ++ A TQ+
Sbjct: 345 ELEANETTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLES 404
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Q++ A Q+ A T+++ T++ TQ+ Q+ + + A
Sbjct: 405 GKAQLTSARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQA 454
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T + + T++ T ++ Q++ ++ A ++ Q++ A TQ+ Q++
Sbjct: 351 TTLQDSRTELENNRTTITDGERQLADGRAQIASARQQIAQGRQQIAEARTQLESGKAQLT 410
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESN 182
A Q+ A T+++ T++ TQ+ Q+ + + A +L ++ P + N
Sbjct: 411 SARKQLDAAQTELTANRTKIEQGITQIDQGVAQIDQMLSMIQQADN--LLAQLDPNIDFN 468
Query: 183 S 183
S
Sbjct: 469 S 469
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1737 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1796
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1797 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1856
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1857 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1887
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1713 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1771
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1772 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1831
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1832 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1864
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1708 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1766
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1767 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1801
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1734 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1793
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1794 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1853
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1854 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1884
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1710 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1768
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1769 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1828
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1829 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1861
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1705 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 1763
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1764 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1798
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1707 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1765
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 70/157 (44%), Gaps = 46/157 (29%)
Query: 55 VYTVSPAYTQVSPAYTQV-----SPA------------------------------YTQV 79
VY+ +P + Q SP++ SPA Y+
Sbjct: 1646 VYSPTPHF-QSSPSFAGSGSNIYSPANAYSPSSANYSPNSPSYSPTSPSYSPSSPSYSPT 1704
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y+ SP+Y P SP YTPV+P+Y+ SP Y+ SP Y+ SPAY+Q + Y+ S Y
Sbjct: 1705 SPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTY 1763
Query: 140 TQV---------SPAYTQVSPAYTQVSPAYTQVSSAY 167
+ SP YT SP Y+ SP Y+ S Y
Sbjct: 1764 SPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
>gi|389586386|dbj|GAB69115.1| merozoite surface protein-9 precursor [Plasmodium cynomolgi strain
B]
Length = 818
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 46 LSTDEDEATVYT--VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
+ T+E+EA V+P T+V P +V P +V+P +V+P V P T V P
Sbjct: 680 VGTEEEEAVPENGEVAPENTEVVPENAEVVPENAEVAPENAEVAPENTEVEPENTEVVPE 739
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
+V+P +V+P + P T A+ +A
Sbjct: 740 NAEVAPENAEVAPENAEAVPENTVEEAAHVDAHVA 774
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
+ T+E+EA P +V + P +V + P V+P T V P
Sbjct: 652 VGTEEEEAV-----PENAEVGTEEEEAVPENAEVGTEEEEAVPENGEVAPENTEVVPENA 706
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+V P +V+P +V+P T+V T+V +V+P +V+P + P T +
Sbjct: 707 EVVPENAEVAPENAEVAPENTEVEPENTEVVPENAEVAPENAEVAPENAEAVPENTVEEA 766
Query: 166 AY 167
A+
Sbjct: 767 AH 768
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
+ T+E+EA P +V + P +V+P T+V P V P V+P
Sbjct: 666 VGTEEEEAV-----PENAEVGTEEEEAVPENGEVAPENTEVVPENAEVVPENAEVAPENA 720
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+V+P T+V P T+V P +V+ +V+ + P T A+ A QV+
Sbjct: 721 EVAPENTEVEPENTEVVPENAEVAPENAEVAPENAEAVPENTVEEAAHVDAHVA-EQVAD 779
Query: 166 AYTQVILNKI 175
+ +N +
Sbjct: 780 DVEEATVNVV 789
Score = 43.5 bits (101), Expect = 0.063, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
+ T+E EA P +V + P +V + P V P
Sbjct: 638 VGTEEVEAV-----PENVEVGTEEEEAVPENAEVGTEEEEAVPENAEVGTEEEEAVPENG 692
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+V+P T+V P +V P +V+ +V+ T+V P T+V P +V+P +V+
Sbjct: 693 EVAPENTEVVPENAEVVPENAEVAPENAEVAPENTEVEPENTEVVPENAEVAPENAEVAP 752
Query: 166 AYTQVI 171
+ +
Sbjct: 753 ENAEAV 758
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT +P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 33/143 (23%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV---- 114
SP Y+ SP Y+ SP Y SP Y +P + P S Y+P + Y+ SP Y+
Sbjct: 1595 SPNYSPSSPNYSPTSPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFP 1654
Query: 115 -SPAYTQVSPAYTQVSLAYTQVS----------------------------LAYTQVSPA 145
SP++ AY+ S Y+ SP+
Sbjct: 1655 SSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPS 1714
Query: 146 YTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT +P+Y+ S Y+
Sbjct: 1715 YSPTSPNYTPATPSYSPTSPNYS 1737
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT +P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1707 CYSPTSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSP 1765
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1800
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 48/146 (32%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS-----PAY-----TQVS 108
SP Y SP Y +P + S Y+ + Y P SP Y+P S P++ S
Sbjct: 1609 SPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYS 1668
Query: 109 PA-------------------------------------YTQVSPAYTQVSPAYTQVSLA 131
P Y+ SP+Y+ SP YT + +
Sbjct: 1669 PGNAYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPS 1728
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVS 157
Y+ S Y+ SP Y+ SPAY+Q
Sbjct: 1729 YSPTSPNYS-ASPHYSPASPAYSQTG 1753
>gi|383856040|ref|XP_003703518.1| PREDICTED: protein LMBR1L-like [Megachile rotundata]
Length = 524
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVS 59
SY LI KF+R+D EDY S DEDEATVY +S
Sbjct: 33 SYALIGKFRRRDREDYFSVDEDEATVYRIS 62
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1736 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPTSPKYSP 1795
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1796 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1855
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1856 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1886
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT +P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1712 SPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1771 DGSPGSPQYTPGSPQYSPTSPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1830
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1831 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1863
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT +P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1707 CYSPTSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSP 1765
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1766 PSPSYDGSPGSPQYTPGSPQYSPTSPKYSPTSPLY 1800
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1276 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1335
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1336 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1395
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1396 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1426
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1252 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1310
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1311 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1370
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1371 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1403
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1247 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 1305
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1306 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1340
>gi|333023133|ref|ZP_08451197.1| putative beta keto-acyl synthase [Streptomyces sp. Tu6071]
gi|332742985|gb|EGJ73426.1| putative beta keto-acyl synthase [Streptomyces sp. Tu6071]
Length = 2115
Score = 49.7 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
DEA Y + AY + AY + +P++ Q +P+ AY PAY +PAY Q P
Sbjct: 989 DEAPGYERTRAYGEAPTAYGEAAPSHGQAAPSQGAAPTAYGQPVPAYGQSAPAYGQPVPT 1048
Query: 111 YTQVSPAYTQ 120
Y +PA+ Q
Sbjct: 1049 YGATAPAHGQ 1058
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Y + + AY + AY + +P++ Q +P+ AY PAY Q +PAY Q P Y
Sbjct: 991 APGYER-TRAYGEAPTAYGEAAPSHGQAAPSQGAAPTAYGQPVPAYGQSAPAYGQPVPTY 1049
Query: 119 TQVSPAYTQ 127
+PA+ Q
Sbjct: 1050 GATAPAHGQ 1058
Score = 44.3 bits (103), Expect = 0.033, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+P Y + + AY + AY + +P++ Q + + AY Q PAY Q +PAY Q P Y
Sbjct: 991 APGYER-TRAYGEAPTAYGEAAPSHGQAAPSQGAAPTAYGQPVPAYGQSAPAYGQPVPTY 1049
Query: 161 TQVSSAYTQ 169
+ A+ Q
Sbjct: 1050 GATAPAHGQ 1058
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 49.7 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQVSPA 117
SP+Y+ SP Y+ SP P SP+Y P SP ++P SPA Y+ SP++ Q + A
Sbjct: 1670 SPSYSPASPNYSPASPNLHGAGP----TSPSYSPASPTWSPTSPAQYSPTSPSFQQTAGA 1725
Score = 40.8 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 28/99 (28%)
Query: 92 PVSPA---------------------YTPVSPAY--TQVSPAYTQVSPAYTQVSPAYTQV 128
P SPA Y+P SPA + SP+Y+ SP Y+ SP
Sbjct: 1631 PTSPASPNYSPTSPSYSPASPSSPRHYSPTSPAQYASPTSPSYSPASPNYSPASPNLHGA 1690
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPA-YTQVSPAYTQVSSA 166
S +Y+ SP ++ SPA Y+ SP++ Q + A
Sbjct: 1691 G----PTSPSYSPASPTWSPTSPAQYSPTSPSFQQTAGA 1725
>gi|219118997|ref|XP_002180265.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408522|gb|EEC48456.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 2966
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 39 RKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT 98
R+ L + D DE V+P VSP+Y + + T VSP Y + S VSP Y
Sbjct: 70 RRRLTEANEDDGDE-----VAPGAPGVSPSYRRGTMGDTSVSPIYKKRSMGTTSVSPIYK 124
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+ T VSP+Y + + T VSP+Y + ++ + L Y +++ + + +S
Sbjct: 125 KSTMGDTSVSPSYKKSTMGDTSVSPSYRRDAMEGSLTDL-YAELATSKSNLS 175
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
V+P VSP+Y + + T VSP Y + S T VS Y + ++ T VSP+Y + +
Sbjct: 84 VAPGAPGVSPSYRRGTMGDTSVSPIYKKRSMGTTSVSPIYKKSTMGDTSVSPSYKKSTMG 143
Query: 153 YTQVSPAYTQ 162
T VSP+Y +
Sbjct: 144 DTSVSPSYRR 153
>gi|405968700|gb|EKC33746.1| Poly [ADP-ribose] polymerase 4 [Crassostrea gigas]
Length = 3371
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT-QVSPAYTQVSPAYTQVSP 123
PA++ SPAY S + P SPAY+P SPAY +S Y + A +Q P
Sbjct: 1523 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1573
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT-QVSPAYTQVSPAYTQVSP 123
PA++ SPAY S + P SPAY+P SPAY +S Y + A +Q P
Sbjct: 1743 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1793
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP-VSPAYTQVSPAYTQVSP 116
PA++ SPAY S + SPAY P SPAY P +S Y + A +Q P
Sbjct: 1523 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1573
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP-VSPAYTQVSPAYTQVSP 116
PA++ SPAY S + SPAY P SPAY P +S Y + A +Q P
Sbjct: 1743 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1793
Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT-QVSLAYTQVSLAYTQVSP 144
PA++P SPAY S + SPAY+ SPAY +S Y + A +Q P
Sbjct: 1523 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1573
Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT-QVSLAYTQVSLAYTQVSP 144
PA++P SPAY S + SPAY+ SPAY +S Y + A +Q P
Sbjct: 1743 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1793
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 54 TVYTVS---PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSP 109
T++T S PA++ SPAY S + SPAY+ SPAY P +S Y + A +Q P
Sbjct: 1514 TIHTNSFTPPAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1573
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 54 TVYTVS---PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSP 109
T++T S PA++ SPAY S + SPAY+ SPAY P +S Y + A +Q P
Sbjct: 1734 TIHTNSFTPPAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1793
Score = 39.7 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT-QVSLAYTQVSPAYTQVSP 151
++TP PA++ SPAY S + SPAY+ S AY +S Y + A +Q P
Sbjct: 1519 SFTP--PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1573
Score = 39.7 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT-QVSLAYTQVSPAYTQVSP 151
++TP PA++ SPAY S + SPAY+ S AY +S Y + A +Q P
Sbjct: 1739 SFTP--PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTVP 1793
Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT-QVSPAYTQVSSAYTQVI 171
PA++ S AY S + SPAY+ SPAY +S Y + A +Q +
Sbjct: 1523 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTV 1572
Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT-QVSPAYTQVSSAYTQVI 171
PA++ S AY S + SPAY+ SPAY +S Y + A +Q +
Sbjct: 1743 PAFSPASPAYGSTSAGFCPTSPAYSPTSPAYNPTISQTYFSTTEAVSQTV 1792
>gi|68124015|emb|CAJ01915.1| DNA-directed RNA polymerase [Solanum tuberosum]
Length = 361
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPAY+ SP+Y+ SP+Y+ S +Y+
Sbjct: 143 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSSSYSP 202
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
S +Y+ S Y+ SPAY+ SPAY+ SPAY+ +Y+ +
Sbjct: 203 TSPSYSPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYSPTL 246
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 35/101 (34%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA------------------------ 96
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPA
Sbjct: 143 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSSSYSP 202
Query: 97 -----------YTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
Y+P SPAY+ SPAY+ SPAY+ P+Y+
Sbjct: 203 TSPSYSPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYS 243
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 35/97 (36%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---------------------------- 89
SP Y+ SP Y+ SP Y+ SP Y+ SPA
Sbjct: 147 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSSSYSPTSPS 206
Query: 90 -------YIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
Y P SPAY+P SPAY+ SPAY+ P+Y+
Sbjct: 207 YSPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTLPSYS 243
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 36/122 (29%)
Query: 59 SPAYTQVSPAYTQVSPAYTQ-VSPAYTQ--------------------------VSPAYI 91
SP Y+ SP+Y+ SPA T+ SP Q SP+Y
Sbjct: 1629 SPNYSPTSPSYSPASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPASPNLHATSPSYS 1688
Query: 92 PVSPAYTPVSP-AYTQVSPAY--------TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
P SP ++P SP AY+ SP++ + SP Y+ SP+++ + + Q
Sbjct: 1689 PASPTWSPTSPDAYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQY 1748
Query: 143 SP 144
SP
Sbjct: 1749 SP 1750
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSP-AYTQVSPAYTQVSPA--YIPVSPAYTPVSPAYTQVSPAY 111
++ SP+Y+ SP ++ SP AY+ SP++ + SP P SP Y+P SP+++ +P
Sbjct: 1680 LHATSPSYSPASPTWSPTSPDAYSPTSPSFHR-SPGQQMSPTSPGYSPTSPSFSPRTPGR 1738
Query: 112 TQVSPAYTQVSP 123
+ Q SP
Sbjct: 1739 GPSGGSGDQYSP 1750
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 37/143 (25%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1727 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1786
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1787 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1846
Query: 140 TQVSPAYTQVSPA-YTQVSPAYT 161
+ SP Y+ +P+ Y+ SPAY+
Sbjct: 1847 SPTSPMYSPTAPSHYSPTSPAYS 1869
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI----------------PVSPAYTPVS 101
V+P+Y+ SP Y+ SP Y+ SPAY+Q Y P SP YTP S
Sbjct: 1716 VTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1774
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P Y+ SP Y+ SP Y+ SP ++ + Y+ Y+ SP Y+ Y+ S Y+
Sbjct: 1775 PQYSPASPKYSPTSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNMSIYSPSSTKYS 1833
Query: 162 QVSSAYTQVILN 173
S YT N
Sbjct: 1834 PTSPTYTPTARN 1845
>gi|18766202|gb|AAL78898.1|AF435854_1 merozoite surface protein-9 precursor [Plasmodium cynomolgi]
Length = 818
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 46 LSTDEDEATVYT--VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
+ T+E+EA V+P T+V P +V P +V+P +V+P V P T V P
Sbjct: 680 VGTEEEEAVPENGEVAPENTEVVPENAKVVPENAEVAPENAEVAPENTEVEPENTEVVPE 739
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
+V+P +V+P + P T A+ +A
Sbjct: 740 NAEVAPENAEVAPENPEAVPENTVEEAAHVDAHVA 774
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
+ T+E+EA P +V + P +V + P V+P T V P
Sbjct: 652 VGTEEEEAV-----PENAEVGTEEEEAVPENAEVGTEEEEAVPENGEVAPENTEVVPENA 706
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+V P +V+P +V+P T+V T+V +V+P +V+P + P T +
Sbjct: 707 KVVPENAEVAPENAEVAPENTEVEPENTEVVPENAEVAPENAEVAPENPEAVPENTVEEA 766
Query: 166 AY 167
A+
Sbjct: 767 AH 768
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
+ T+E+EA P +V + P +V+P T+V P V P V+P
Sbjct: 666 VGTEEEEAV-----PENAEVGTEEEEAVPENGEVAPENTEVVPENAKVVPENAEVAPENA 720
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+V+P T+V P T+V P +V+ +V+ + P T A+ A QV+
Sbjct: 721 EVAPENTEVEPENTEVVPENAEVAPENAEVAPENPEAVPENTVEEAAHVDAHVA-EQVAD 779
Query: 166 AYTQVILNKI 175
+ +N +
Sbjct: 780 DVEEATVNVV 789
Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
+ T+E EA P +V + P +V + P V P
Sbjct: 638 VGTEEVEAV-----PENVEVGTEEEEAVPENAEVGTEEEEAVPENAEVGTEEEEAVPENG 692
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+V+P T+V P +V P +V+ +V+ T+V P T+V P +V+P +V+
Sbjct: 693 EVAPENTEVVPENAKVVPENAEVAPENAEVAPENTEVEPENTEVVPENAEVAPENAEVA 751
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 2/127 (1%)
Query: 46 LSTDEDEATVYTVSPAYTQVS--PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
+ T+E EA +V P +V + P +V P V
Sbjct: 624 VGTEEVEAVPENAEVGTEEVEAVPENVEVGTEEEEAVPENAEVGTEEEEAVPENAEVGTE 683
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
+ P +V+P T+V P +V +V+ +V+P T+V P T+V P +V
Sbjct: 684 EEEAVPENGEVAPENTEVVPENAKVVPENAEVAPENAEVAPENTEVEPENTEVVPENAEV 743
Query: 164 SSAYTQV 170
+ +V
Sbjct: 744 APENAEV 750
>gi|302674473|ref|XP_003026921.1| hypothetical protein SCHCODRAFT_12255 [Schizophyllum commune H4-8]
gi|300100606|gb|EFI92018.1| hypothetical protein SCHCODRAFT_12255 [Schizophyllum commune H4-8]
Length = 368
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 32/52 (61%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
Y Q SPAY + S Y Q SPAY Q SPAY SP Y +PAY Q SPAY +
Sbjct: 203 YDQPSPAYEKHSQTYDQRSPAYDQASPAYDQPSPTYDKPAPAYDQPSPAYEE 254
>gi|156093621|ref|XP_001612849.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148801723|gb|EDL43122.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 2785
Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A+T PA+T PA T PA T P + P +T PA+T PA+T PA+T
Sbjct: 2141 AFTVEEPAFTVEEPAITVEEPAITVEEPVFTVEEPVFTVEEPAFTVEEPAFTVEEPAFTV 2200
Query: 121 VSPAYT 126
PA T
Sbjct: 2201 EEPATT 2206
Score = 42.7 bits (99), Expect = 0.096, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
A+T PA+T PA T PA T P +T +T A+T PA+T PA+T
Sbjct: 2141 AFTVEEPAFTVEEPAITVEEPAITVEEPVFTVEEPVFTVEEPAFTVEEPAFTVEEPAFTV 2200
Query: 156 VSPAYT 161
PA T
Sbjct: 2201 EEPATT 2206
Score = 39.7 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
A+T PA+T PA T PA T +T +T PA+T PA+T PA+T
Sbjct: 2141 AFTVEEPAFTVEEPAITVEEPAITVEEPVFTVEEPVFTVEEPAFTVEEPAFTVEEPAFTV 2200
Query: 163 VSSAYT 168
A T
Sbjct: 2201 EEPATT 2206
>gi|359774884|ref|ZP_09278230.1| hypothetical protein ARGLB_008_00820 [Arthrobacter globiformis NBRC
12137]
gi|359307784|dbj|GAB12059.1| hypothetical protein ARGLB_008_00820 [Arthrobacter globiformis NBRC
12137]
Length = 310
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P Y Q +P + Q +P + Q SP Y Q +P P +P Y +P + Q +P Y Q +P Y
Sbjct: 28 PRYGQDAPQHEQGTPQFGQNSPQYGQGTP---PAAPQYGENAPQFGQNAPQYGQNAPQYG 84
Query: 120 QVS---PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Q P Y Q Y Q +P Y Q Y Q P Y Q
Sbjct: 85 QGGQNAPQYGQNPPQYGQTGQG---GAPQYGQSQ--YGQNPPQYGQ 125
>gi|56692779|ref|YP_164237.1| hypothetical protein ORF142L [Singapore grouper iridovirus]
gi|42517491|gb|AAS18157.1| unknown [Singapore grouper iridovirus]
Length = 520
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 51 DEATV--YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
+EA+V ++ S A+ S A+ + S A+ S A+ S A+ P S A+ P S A+ S
Sbjct: 398 EEASVAFWSASVAFWSASSAFEEASVAFWPASVAFWSASSAFWPASVAFWPASVAFWSAS 457
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
A+ S A+ S A+ + S+A+ S+A+ S A+ S A+ + S A+ S
Sbjct: 458 VAFWPASSAFWPASSAFEEASVAFWSASVAFWPASSAFWPASSAFEEASVAFWSAS 513
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 51 DEATV--YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
+EA+V ++ S A+ S A+ S A+ S A+ S A+ P S A+ P S A+ + S
Sbjct: 342 EEASVAFWSASSAFWPASVAFWSASSAFWPASVAFWSASVAFWPASSAFWPASSAFEEAS 401
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
A+ S A+ S A+ + S+A+ S+A+ S A+ S A+ S A+ S A+
Sbjct: 402 VAFWSASVAFWSASSAFEEASVAFWPASVAFWSASSAFWPASVAFWPASVAFWSASVAF 460
>gi|405964704|gb|EKC30157.1| hypothetical protein CGI_10021982 [Crassostrea gigas]
Length = 1500
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 56/122 (45%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
ED A A T PA T+ A TQ A Q+ P+ A + P+ TQ
Sbjct: 943 EDSAAAAQQMSATTPQKPATTEKKSATTQQISATNQLMPSTTQQISATNLLMPSTTQQIS 1002
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
A + PA TQ PA TQ A TQ A TQ PA TQ PA TQ PA TQ SA TQ
Sbjct: 1003 ATNLLMPATTQQMPATTQQMPATTQQISATTQQMPATTQQMPATTQQMPATTQQISATTQ 1062
Query: 170 VI 171
I
Sbjct: 1063 QI 1064
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA TQ PA TQ A TQ A TQ PA I A + PA T+ A TQ+ PA T
Sbjct: 1044 PATTQQMPATTQQISATTQQISATTQQMPATIHQMSAMNQLMPATTKQISATTQLMPATT 1103
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYT-----QVSPAYTQVSPAYTQVSSAYTQVILNK 174
Q PA T+ A TQ S ++ + T Q++P Q+S QVS++ TQ+ +
Sbjct: 1104 QQMPATTKQMSAPTQPSTTVPRLLSSSTLMSVPQMAPLSIQISAPDLQVSASVTQMSAQR 1163
Query: 175 I 175
+
Sbjct: 1164 L 1164
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
+T++ AT +S A Q+ P+ TQ A + P+ TQ A + PA T PA TQ
Sbjct: 962 TTEKKSATTQQIS-ATNQLMPSTTQQISATNLLMPSTTQQISATNLLMPATTQQMPATTQ 1020
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ-VSPAYTQVSPAYTQVSPAYTQVSS 165
PA TQ A TQ PA TQ A TQ A TQ +S Q+S A TQ PA S
Sbjct: 1021 QMPATTQQISATTQQMPATTQQMPATTQQMPATTQQISATTQQIS-ATTQQMPATIHQMS 1079
Query: 166 AYTQVI 171
A Q++
Sbjct: 1080 AMNQLM 1085
>gi|302523052|ref|ZP_07275394.1| beta keto-acyl synthase [Streptomyces sp. SPB78]
gi|302431947|gb|EFL03763.1| beta keto-acyl synthase [Streptomyces sp. SPB78]
Length = 1893
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
DEA Y + AY + AY + +P++ Q +P+ A+ PAY +PAY Q P
Sbjct: 1036 DEAPGYERTRAYGEAPTAYGEAAPSHGQAAPSQGAAPAAHGQPVPAYGQSAPAYGQSVPT 1095
Query: 111 YTQVSPAYTQ 120
Y SPA+ Q
Sbjct: 1096 YGATSPAHGQ 1105
Score = 43.5 bits (101), Expect = 0.071, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+P Y + + AY + AY + +P++ Q + + A+ Q PAY Q +PAY Q P Y
Sbjct: 1038 APGYER-TRAYGEAPTAYGEAAPSHGQAAPSQGAAPAAHGQPVPAYGQSAPAYGQSVPTY 1096
Query: 161 TQVSSAYTQ 169
S A+ Q
Sbjct: 1097 GATSPAHGQ 1105
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQ-VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
P + SPA + Y+ SP T SP Y P S Y+P SP + SP Y SP +
Sbjct: 1550 PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP-SSGYSPTSPGMSITSPRY-MTSPGF 1607
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SP + S AY+ S Y Q A + SP+Y+ SP +
Sbjct: 1608 SPASPTFAPTSPAYSPTSPGYGQ---AQSPTSPSYSPTSPGF 1646
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 66 SPAYTQ------VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV----S 115
SP Y+ SP + SP Y SP + P SP + P SPAY+ SP Y Q S
Sbjct: 1578 SPGYSPSSGYSPTSPGMSITSPRY-MTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTS 1636
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y+ SP ++ S +Y+ S +++ SPA++ SP+Y+ SPA + +
Sbjct: 1637 PSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRH 1688
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ S Y+ SP + SP Y SP + P SP + P SPAY+ SP Y Q A
Sbjct: 1578 SPGYSP-SSGYSPTSPGMSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQ---AQ 1632
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 1633 SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1680
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVSPAY 111
Y SP ++ SP + SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1601 YMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1660
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAY----TQVSPAYTQVSPAYTQVSP 158
+ SPA++ SP+Y+ S A + + + SP YT SP ++ SP
Sbjct: 1661 SPASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYT-PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
P + SPA + Y P SP T P SP Y+ S Y+ SP + SP Y
Sbjct: 1550 PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP-SSGYSPTSPGMSITSPRYM------ 1602
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SP ++ SP + SPAY+ S Y Q
Sbjct: 1603 ---------TSPGFSPASPTFAPTSPAYSPTSPGYGQ 1630
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQV----SPAYTQVSPAY---------------------IPV 93
SP + SPAY+ SP Y Q SP+Y+ SP + P
Sbjct: 1611 SPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPT 1670
Query: 94 SPAYTPVSPAYTQVSPAY----TQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQ------- 141
SP+Y+P SPA + + + SP YT SP ++ S AY+ S +
Sbjct: 1671 SPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFAGSPTSPGG 1730
Query: 142 -VSPAYTQVSPAYTQVSP 158
SP Y+ SP + SP
Sbjct: 1731 PTSPGYSPTSPTFNPTSP 1748
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQ-VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
P + SPA + Y+ SP T SP Y P S Y+P SP + SP Y SP +
Sbjct: 1550 PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP-SSGYSPTSPGMSITSPRY-MTSPGF 1607
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SP + S AY+ S Y Q A + SP+Y+ SP +
Sbjct: 1608 SPASPTFAPTSPAYSPTSPGYGQ---AQSPTSPSYSPTSPGF 1646
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 66 SPAYTQ------VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV----S 115
SP Y+ SP + SP Y SP + P SP + P SPAY+ SP Y Q S
Sbjct: 1578 SPGYSPSSGYSPTSPGMSITSPRY-MTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTS 1636
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y+ SP ++ S +Y+ S +++ SPA++ SP+Y+ SPA + +
Sbjct: 1637 PSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRH 1688
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ S Y+ SP + SP Y SP + P SP + P SPAY+ SP Y Q A
Sbjct: 1578 SPGYSP-SSGYSPTSPGMSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQ---AQ 1632
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 1633 SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1680
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVSPAY 111
Y SP ++ SP + SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1601 YMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1660
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAY----TQVSPAYTQVSPAYTQVSP 158
+ SPA++ SP+Y+ S A + + + SP YT SP ++ SP
Sbjct: 1661 SPASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYT-PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
P + SPA + Y P SP T P SP Y+ S Y+ SP + SP Y
Sbjct: 1550 PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP-SSGYSPTSPGMSITSPRYM------ 1602
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SP ++ SP + SPAY+ S Y Q
Sbjct: 1603 ---------TSPGFSPASPTFAPTSPAYSPTSPGYGQ 1630
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 33/135 (24%)
Query: 59 SPAYTQVSPAYTQVSPAYTQV----SPAYTQVSPAY---------------------IPV 93
SP + SPAY+ SP Y Q SP+Y+ SP + P
Sbjct: 1611 SPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPT 1670
Query: 94 SPAYTPVSPAYTQVSPAY----TQVSPAYTQVSPAYTQVS-LAYTQVS--LAYTQVSPAY 146
SP+Y+P SPA + + + SP YT SP ++ S AY+ S A + SP
Sbjct: 1671 SPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFAGSPTSPG- 1729
Query: 147 TQVSPAYTQVSPAYT 161
SP Y+ SP +
Sbjct: 1730 GPTSPGYSPTSPTFN 1744
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides immitis
RS]
Length = 1750
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQ-VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
P + SPA + Y+ SP T SP Y P S Y+P SP + SP Y SP +
Sbjct: 1550 PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP-SSGYSPTSPGMSITSPRY-MTSPGF 1607
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
+ SP + S AY+ S Y Q A + SP+Y+ SP +
Sbjct: 1608 SPASPTFAPTSPAYSPTSPGYGQ---AQSPTSPSYSPTSPGF 1646
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 11/112 (9%)
Query: 66 SPAYTQ------VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV----S 115
SP Y+ SP + SP Y SP + P SP + P SPAY+ SP Y Q S
Sbjct: 1578 SPGYSPSSGYSPTSPGMSITSPRY-MTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTS 1636
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P+Y+ SP ++ S +Y+ S +++ SPA++ SP+Y+ SPA + +
Sbjct: 1637 PSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRH 1688
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ S Y+ SP + SP Y SP + P SP + P SPAY+ SP Y Q A
Sbjct: 1578 SPGYSP-SSGYSPTSPGMSITSPRY-MTSPGFSPASPTFAPTSPAYSPTSPGYGQ---AQ 1632
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 1633 SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1680
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVSPAY 111
Y SP ++ SP + SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1601 YMTSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1660
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAY----TQVSPAYTQVSPAYTQVSP 158
+ SPA++ SP+Y+ S A + + + SP YT SP ++ SP
Sbjct: 1661 SPASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSP 1711
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYT-PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
P + SPA + Y P SP T P SP Y+ S Y+ SP + SP Y
Sbjct: 1550 PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP-SSGYSPTSPGMSITSPRY------- 1601
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SP ++ SP + SPAY+ S Y Q
Sbjct: 1602 --------MTSPGFSPASPTFAPTSPAYSPTSPGYGQ 1630
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQV----SPAYTQVSPAY---------------------IPV 93
SP + SPAY+ SP Y Q SP+Y+ SP + P
Sbjct: 1611 SPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPT 1670
Query: 94 SPAYTPVSPAYTQVSPAY----TQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQ------- 141
SP+Y+P SPA + + + SP YT SP ++ S AY+ S +
Sbjct: 1671 SPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNFAGSPTSPGG 1730
Query: 142 -VSPAYTQVSPAYTQVSP 158
SP Y+ SP + SP
Sbjct: 1731 PTSPGYSPTSPTFNPTSP 1748
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 66 SPAYTQVSP-AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
SP ++ SP Y+ SPA SP + P SP+++P SPA+T SP Y+ SP+ Q
Sbjct: 1574 SPGFSPTSPRGYSPTSPAMGMTSPGFAPTSPSFSPQSPAFTPTSPMYSPTSPSGMQ 1629
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 62 YTQVSPAYTQVSPAYTQVSPA-YTQVSPAYIPVSPAYTPVSP-AYTQVSPAYTQVSPAYT 119
Y ++P Y SP SP Y+ SP + SP ++P SP Y+ SPA SP +
Sbjct: 1542 YGGITPGYAAASPYSGARSPGGYSPTSPFGVS-SPGFSPTSPRGYSPTSPAMGMTSPGFA 1600
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
SP+++ S A+T S Y+ SP+ Q
Sbjct: 1601 PTSPSFSPQSPAFTPTSPMYSPTSPSGMQ 1629
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY----TQVSPAYTQVSPA 117
SPA SP + SP ++ SP++ P SPAY+P SP Y + SP Y+ SP
Sbjct: 1570 SPAIGITSPRFMS-SPGFSPTSPSFAPTSPAYSPTSPMYAAGGSPTSPNYSPTSPG 1624
Score = 42.7 bits (99), Expect = 0.094, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAY----TQVSPAYIPVSPAYTP 99
+ SP ++ SP++ SPAY+ SP Y + SP Y P SP +P
Sbjct: 1580 FMSSPGFSPTSPSFAPTSPAYSPTSPMYAAGGSPTSPNYSPTSPGRSP 1627
Score = 42.7 bits (99), Expect = 0.099, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY----TQVSPAYTQVS 129
SPA SP ++ SP ++P SP++ SPAY+ SP Y + SP Y+ S
Sbjct: 1570 SPAIGITSPRFMS-SPGFSPTSPSFAPTSPAYSPTSPMYAAGGSPTSPNYSPTS 1622
>gi|194755693|ref|XP_001960118.1| GF13208 [Drosophila ananassae]
gi|190621416|gb|EDV36940.1| GF13208 [Drosophila ananassae]
Length = 377
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T +PA + +PA + +PA + +PA + +PA +PA + +PA + +PA + +P
Sbjct: 210 TAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAP 269
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
A + +PA + + A + + A + +PA + +PA + +PA
Sbjct: 270 AESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPA 312
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T +PA + +PA + +PA + +PA + +PA +PA + +PA + +PA + +P
Sbjct: 217 TAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAP 276
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
A + +PA + + A + + A + +PA + +PA + +PA
Sbjct: 277 AESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPA 319
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T +PA + +PA + +PA + +PA + +PA +PA + +PA + +PA + +P
Sbjct: 224 TAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAP 283
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
A + +PA + + A + + A + +PA + +PA + +PA
Sbjct: 284 AESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPA 326
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 25 LLNVLSYILIEKFKRKDLEDYLSTDEDEATVY---------TVSPAYTQVSPAYTQVSPA 75
L+ V Y+ K +R ++D + E + T +PA + +P T +PA
Sbjct: 155 LIEVNEYVCTNKSERTYVQDTAAVYEQMNLCFEGGPLPSETTAAPAESTAAPPETTAAPA 214
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
+ +PA + +PA +PA + +PA + +PA + +PA + +PA + + A +
Sbjct: 215 ESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTA 274
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPA 159
+ A + +PA + +PA + +PA
Sbjct: 275 APAESTAAPAESTAAPAESTAAPA 298
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T +P T +PA + +PA + +PA + +PA +PA + +PA + +PA + +P
Sbjct: 203 TAAPPETTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAP 262
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
A + +PA + + A + + A + +PA + +PA + +PA
Sbjct: 263 AESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPA 305
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T +PA + +PA + +PA + +PA + +PA +PA + +PA + +PA + +P
Sbjct: 238 TAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAP 297
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
A + +PA + + A + + A + +PA + +PA +PA
Sbjct: 298 AESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAEPTDAPA 340
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T +PA + +PA + +PA + +PA + +PA +PA + +PA + +PA + +P
Sbjct: 245 TAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAPAESTAAP 304
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
A + +PA + + A + + A + +PA +PA + +P
Sbjct: 305 AESTAAPAESTAAPAESTAAPAESTAAPAEPTDAPADKEKAP 346
>gi|156367456|ref|XP_001627433.1| predicted protein [Nematostella vectensis]
gi|156214342|gb|EDO35333.1| predicted protein [Nematostella vectensis]
Length = 320
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
T+ +P T+ +P + +P T+ +P YIP YTP YT P TQ +P T
Sbjct: 218 TRYTPKRTRYTPKRARYTPKRTRFTPKRARYIPKRTRYTPKRTRYT---PKRTQYTPKRT 274
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
+ +P TQ + T + T+ +P T+ +P T +P TQ+
Sbjct: 275 RYTPKRTQYTPKRTGYTPKRTRYTPKRTRYTPKRTIYTPKRTQI 318
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 77 TQVSPAYTQVSPA---YIPVSPAYTPVS----PAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
T+ +P T+ +P Y P +TP P T+ +P T+ +P TQ +P T+ +
Sbjct: 218 TRYTPKRTRYTPKRARYTPKRTRFTPKRARYIPKRTRYTPKRTRYTPKRTQYTPKRTRYT 277
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQ + T +P T+ +P T+ +P T + TQ+
Sbjct: 278 PKRTQYTPKRTGYTPKRTRYTPKRTRYTPKRTIYTPKRTQI 318
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 44/146 (30%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1710 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1768
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1769 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1828
Query: 145 ---------AYTQVSPAYTQVSPAYT 161
Y+ SP YT + Y+
Sbjct: 1829 MSIYSPSSTKYSPTSPTYTPTARNYS 1854
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1734 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1793
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1794 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1853
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ P Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1854 SPTPPMYSPTAPSHYSPTSPAYSPSSPTFEE 1884
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1705 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 1763
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1764 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1798
>gi|424907573|ref|ZP_18331051.1| Rhs element Vgr protein [Burkholderia thailandensis MSMB43]
gi|390927022|gb|EIP84436.1| Rhs element Vgr protein [Burkholderia thailandensis MSMB43]
Length = 475
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS ++T VS ++T V ++ VS ++T V ++ VS + T VS + T S + T VS +
Sbjct: 282 VSTSFTGVSTSFTGVDTSFKGVSTSFTGVDTSFKGVSTSLTGVSTSITGSSNSVTGVSNS 341
Query: 118 YTQVSPAYTQVSLA-------YTQVSLAYTQVSPA 145
T +S ++ VS++ T VSL+YT S +
Sbjct: 342 MTGISSSWPDVSMSTTGQSQSITGVSLSYTGTSNS 376
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
SPA S +Y+ SPAY P SP+ TP SP Y+ SP+Y+ SP
Sbjct: 1575 SPASGM-SQSYSPSSPAYAPTSPSMTPTSPNYSPTSPSYSPTSP 1617
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
+S +Y+ SPAY SP+ T SP Y+ SP+Y P SP Y+P
Sbjct: 1580 MSQSYSPSSPAYAPTSPSMTPTSPNYSPTSPSYSPTSPNYSP 1621
>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
mytilus]
Length = 1678
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 59 SPAYTQV-SPAYTQV-SPAYTQV------SPAYTQVSPAYIP------VSPAY-TPVSPA 103
SP Y V SP Y + SP Y SP Q SP Y P +SP+Y VSP
Sbjct: 1456 SPNYRAVQSPIYNAIQSPIYHATEGGPGRSPTGNQASPIYSPTTQNNRMSPSYYNSVSPG 1515
Query: 104 YTQV-----SPAYTQV-----SPAYTQVSPAYTQVSLAYT---QVSLAYTQVSPAYTQVS 150
Y + SP Y+Q SP+Y SP Q S +Y+ Q + Q P S
Sbjct: 1516 YYRTPGASSSPVYSQTLGSHQSPSY---SPTQNQGSGSYSPTNQSKIHIYQHQPLDYSSS 1572
Query: 151 PAYTQVSPAYTQ 162
P Y+ +PAY Q
Sbjct: 1573 PHYSPTTPAYNQ 1584
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 23/131 (17%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYT------QVSPA-YTQVSPAYIPVSPAYTPVSPAY 104
++ +Y + SP Q SP Y+ ++SP+ Y VSP Y A + SP Y
Sbjct: 1471 QSPIYHATEGGPGRSPTGNQASPIYSPTTQNNRMSPSYYNSVSPGYYRTPGASS--SPVY 1528
Query: 105 TQV-----SPAYTQVSPAYTQVSPAYTQVSLA----YTQVSLAYTQVSPAYTQVSPAYTQ 155
+Q SP+Y SP Q S +Y+ + + Y L Y+ SP Y+ +PAY Q
Sbjct: 1529 SQTLGSHQSPSY---SPTQNQGSGSYSPTNQSKIHIYQHQPLDYSS-SPHYSPTTPAYNQ 1584
Query: 156 -VSPAYTQVSS 165
SP+Y+ S+
Sbjct: 1585 HYSPSYSPTSN 1595
Score = 41.2 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 53/179 (29%), Positives = 70/179 (39%), Gaps = 52/179 (29%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQV------SPAYTQV-SPAYIPV-SPAYTPV------SP 102
+ SP+ SP Y Q SP Y SP Y V SP Y + SP Y SP
Sbjct: 1428 SFSPSPGVYSPGYAQ-SPGYMSPGQQFMGSPNYRAVQSPIYNAIQSPIYHATEGGPGRSP 1486
Query: 103 AYTQVSPAYT------QVSPA-YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV-----S 150
Q SP Y+ ++SP+ Y VSP Y + A + SP Y+Q S
Sbjct: 1487 TGNQASPIYSPTTQNNRMSPSYYNSVSPGYYRTPGASS---------SPVYSQTLGSHQS 1537
Query: 151 PAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFFHEWVWMSWYPDINPTLP 209
P+Y SP Q S +Y S + S + H+ + S P +PT P
Sbjct: 1538 PSY---SPTQNQGSGSY-------------SPTNQSKIHIYQHQPLDYSSSPHYSPTTP 1580
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY 104
Y SPAY+ SP SP Y+ SP Y+ SP Y P SP Y+P SP Y
Sbjct: 1473 YATSPAYSPTSPNMNLTSPQYSPTSPQYSPTSPTYSPTSPTYSPTSPRY 1521
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y SP + SP T SPAY+ SP SP Y P SP Y+P SP Y+ SP Y+ S
Sbjct: 1462 YGASP-FGATSPYAT--SPAYSPTSPNMNLTSPQYSPTSPQYSPTSPTYSPTSPTYSPTS 1518
Query: 116 PAY 118
P Y
Sbjct: 1519 PRY 1521
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SPAY+ SP SP Y+P SP Y+ SP Y+ SP Y+ SP Y
Sbjct: 1476 SPAYSPTSPNMNLTSPQYSPTSPQYSPTSPTYSPTSPTYSPTSPRY 1521
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSP----AYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
Y+ SP Y+ SP ++P SP SP + SP T SPAY+ SP S
Sbjct: 1435 GYSPSSPGYSPTSP-FMPTSPMVAATSPYGASPFGATSPYAT--SPAYSPTSPNMNLTSP 1491
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
Y+ S Y+ SP Y+ SP Y+ SP Y
Sbjct: 1492 QYSPTSPQYSPTSPTYSPTSPTYSPTSPRY 1521
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSP----AYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
Y+ SP Y P SP + P SP SP + SP T SPAY+ S S
Sbjct: 1435 GYSPSSPGYSPTSP-FMPTSPMVAATSPYGASPFGATSPYAT--SPAYSPTSPNMNLTSP 1491
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Y+ SP Y+ SP Y+ SP Y+ S Y
Sbjct: 1492 QYSPTSPQYSPTSPTYSPTSPTYSPTSPRY 1521
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSP-------AYIP--VSPAYTPVSPAYTQVSPAY 111
Y+ SP Y+ SP + SP SP A P SPAY+P SP SP Y
Sbjct: 1435 GYSPSSPGYSPTSP-FMPTSPMVAATSPYGASPFGATSPYATSPAYSPTSPNMNLTSPQY 1493
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
+ SP Y+ SP Y+ S Y+ S Y
Sbjct: 1494 SPTSPQYSPTSPTYSPTSPTYSPTSPRY 1521
>gi|390353899|ref|XP_003728216.1| PREDICTED: uncharacterized protein LOC100891961 [Strongylocentrotus
purpuratus]
Length = 801
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
V+P V+ T ++P T V+P ++P T V+P T ++P T V+P T ++P
Sbjct: 227 VTPGLATVTSDATSLTPGLTTVNPDTTSLTPGLTTVTPDTTSITPGLTTVTPDTTSITPG 286
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
T V+L T ++ T +P T +P T ++P T V++ T V
Sbjct: 287 VTTVTLDATSITPGLTTATPDATTATPDATSITPGLTTVATDSTTV 332
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
D +T V+P V+ T ++P T V+P T ++P V+P T ++P T V+P
Sbjct: 220 DSSTTSVVTPGLATVTSDATSLTPGLTTVNPDTTSLTPGLTTVTPDTTSITPGLTTVTPD 279
Query: 111 YTQVSPAYTQV-------SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
T ++P T V +P T + T + T ++P T V+ T V+PA
Sbjct: 280 TTSITPGVTTVTLDATSITPGLTTATPDATTATPDATSITPGLTTVATDSTTVTPA 335
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
V+P V+ T ++P T V+ T ++ T V+P T ++P T V+P T ++
Sbjct: 227 VTPGLATVTSDATSLTPGLTTVNPDTTSLTPGLTTVTPDTTSITPGLTTVTPDTTSITPG 286
Query: 167 YTQVILN--KIRPG 178
T V L+ I PG
Sbjct: 287 VTTVTLDATSITPG 300
>gi|328785368|ref|XP_003250590.1| PREDICTED: hypothetical protein LOC100578201 [Apis mellifera]
Length = 1399
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP SP SP +SP Y Q SP P+SP P+SP +SP
Sbjct: 956 LSPPRRLCSPPRRHFSPLRRPMSPMYRQRSPIRRPISPLRRPMSPLRQPLSP-------- 1007
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
++SP T++++ L + Q+SP Q+SP + SP
Sbjct: 1008 -RRLSPRRTEMTMNRPMSPLRH-QISP--RQISPMRSTASP 1044
Score = 43.9 bits (102), Expect = 0.046, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+ VSP ++SP +SP SP SP P+SP Y SP +SP +S
Sbjct: 941 HRVSPP-KRLSPKRPLLSPPRRLCSPPRRHFSPLRRPMSPMYRQRSPIRRPISPLRRPMS 999
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
P +SP ++S T++++ +SP Q+SP Q+SP + S
Sbjct: 1000 PLRQPLSP--RRLSPRRTEMTMN-RPMSPLRHQISP--RQISPMRSTAS 1043
>gi|268555728|ref|XP_002635853.1| Hypothetical protein CBG10520 [Caenorhabditis briggsae]
Length = 668
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A ++V+P ++V+PA + Y++ PA +PA + +P ++ +P ++ +PA ++
Sbjct: 539 ATSEVAPKESEVTPADYGAASKYSESRPAQ--AAPANSEATPVSSEAAPKESEAAPADSE 596
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
P + + ++V+ A ++ PA ++ PA ++VSP ++ SA
Sbjct: 597 KKPKDSGAASMGSKVTPADSEARPATSETRPADSEVSPKDSESVSA 642
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 4 PDFLGLIGGTLTVEIF-----LLVFLLLNVLSYILIEKFKRK-----DLEDYLSTDEDEA 53
P+ + L G + L + + +L + I + ++ +LED +E +
Sbjct: 459 PEMVKLAGNVFKGRLLKHFPSLDLCSAVEILQFFCITRVEKSSRIFYELEDSW-FEEMSS 517
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP-----VSPAYTQVS 108
V P + P ++ + A ++V+P ++V+PA + Y+ +PA ++ +
Sbjct: 518 EVPAAEPVDAKAGPKESKAASATSEVAPKESEVTPADYGAASKYSESRPAQAAPANSEAT 577
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
P ++ +P ++ +PA ++ + + ++V+PA ++ PA ++ PA ++VS
Sbjct: 578 PVSSEAAPKESEAAPADSEKKPKDSGAASMGSKVTPADSEARPATSETRPADSEVS 633
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
Q +PA ++ +P ++ +P ++ +PA P + + ++V+PA ++ PA ++ P
Sbjct: 568 QAAPANSEATPVSSEAAPKESEAAPADSEKKPKDSGAASMGSKVTPADSEARPATSETRP 627
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
A ++VS ++ A Q +P Q + A ++VSP Y +
Sbjct: 628 ADSEVSPKDSESVSA--QSAPPEHQAAGADSEVSPKYDK 664
>gi|195566225|ref|XP_002106688.1| RNA polymerase II 215kD subunit [Drosophila simulans]
gi|194204073|gb|EDX17649.1| RNA polymerase II 215kD subunit [Drosophila simulans]
Length = 552
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 64/154 (41%), Gaps = 44/154 (28%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 374 TSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPS 432
Query: 99 ----PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP---- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 433 YDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSP 492
Query: 145 ----------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 493 NMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 526
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 399 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 458
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 459 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 518
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 519 SPTSPMYSPTAPSHYSPKSPAYSPSSPTFEE 549
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 370 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 428
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 429 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 463
>gi|221482251|gb|EEE20606.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 487
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT-QVSP 116
P T P T P T P T P P P TP P T PA + V P
Sbjct: 260 AKPGATPAKPGATPAKPGVTPAKPDATPAKPGATPAKPGATPAKPGATPAKPALSAPVKP 319
Query: 117 AYTQVSP---AYTQVSLAYTQVSLAYTQVSPAYTQVSP-AYTQVSPAYTQVS---SAYTQ 169
T V P A + L + L T P T V P A P T V A +
Sbjct: 320 GSTPVKPGVGAPAKPGLTPVKPGL-STPAKPGLTPVKPGAGAPAKPGLTPVKPGVGAPAK 378
Query: 170 VILNKIRPGRESNSRSS 186
L ++PG + ++
Sbjct: 379 PGLTPVKPGAGAPAKPG 395
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 40/121 (33%), Gaps = 7/121 (5%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT- 119
A + P T P T P T P P P TP P T P T PA +
Sbjct: 256 AKSDAKPGATPAKPGATPAKPGVTPAKPDATPAKPGATPAKPGATPAKPGATPAKPALSA 315
Query: 120 QVSPAYTQVSLA-YTQVSLAYTQVSPAY-TQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
V P T V T V P T P T V P + A + L ++P
Sbjct: 316 PVKPGSTPVKPGVGAPAKPGLTPVKPGLSTPAKPGLTPVKPG----AGAPAKPGLTPVKP 371
Query: 178 G 178
G
Sbjct: 372 G 372
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 47/129 (36%), Gaps = 12/129 (9%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY----IPVSPAYTPVSPA-YTQVSPAYT 112
V+PA +PA +PA +PA +PA PV P TPV P P T
Sbjct: 278 VTPAKPDATPAKPGATPAKPGATPAKPGATPAKPALSAPVKPGSTPVKPGVGAPAKPGLT 337
Query: 113 QVSPAY-TQVSPAYTQVS-LAYTQVSLAYTQVSPA-YTQVSPAYTQVSPAYTQVSSAYTQ 169
V P T P T V A T V P P T V P + A +
Sbjct: 338 PVKPGLSTPAKPGLTPVKPGAGAPAKPGLTPVKPGVGAPAKPGLTPVKPG----AGAPAK 393
Query: 170 VILNKIRPG 178
L ++PG
Sbjct: 394 PGLTPVKPG 402
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 22/100 (22%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SPAY+ SP Y A + SP SP+Y+P SP Y+ SP SP
Sbjct: 1699 SPQYSPKSPAYSPTSPTYNGGGRAASSTSPG----SPSYSPTSPVYSPTSPQQNGTSPGS 1754
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP SP Y+ SP Y+ SP
Sbjct: 1755 NGTSP------------------TSPQYSPTSPQYSPASP 1776
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP +SP Y SP +SPA Y P SP++ ++ SP SPA
Sbjct: 1548 MSPYRGGMSPGYAPQSPFSAGMSPASPGYGGGYSPSSPSF---GGGFSPQSPGAALTSPA 1604
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
Y SPA Y+ SPAY+ SP Y+ SPA++
Sbjct: 1605 YQMGSPA-------------GYSPASPAYSPTSPNYSPSSPAWS 1635
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA---YTQVSPAYTQVSLAYTQVSLAY 139
Y+ SP Y P SPAY+P SP Y A + SP Y+ SP Y+ S S
Sbjct: 1695 YSPTSPQYSPKSPAYSPTSPTYNGGGRAASSTSPGSPSYSPTSPVYSPTSPQQNGTSPGS 1754
Query: 140 TQVSPAYTQVSPAYTQVSPA 159
SP Q SP Q SPA
Sbjct: 1755 NGTSPTSPQYSPTSPQYSPA 1774
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SPAY+ SP Y A + SP SP+Y+
Sbjct: 1695 YSPTSPQYSPKSPAYSPTSPTYNGGGRAASSTSPG------------------SPSYSPT 1736
Query: 150 SPAYTQVSPAYTQVS 164
SP Y+ SP S
Sbjct: 1737 SPVYSPTSPQQNGTS 1751
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 54/151 (35%), Gaps = 52/151 (34%)
Query: 59 SPAYTQVSPAYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPAY------------- 104
SP SPAY SPA Y+ SPAY+ SP Y P SPA++ +
Sbjct: 1595 SPGAALTSPAYQMGSPAGYSPASPAYSPTSPNYSPSSPAWSGGGGSKVSPTSPSYSPTSP 1654
Query: 105 ---------------------------------TQVSPA-YTQVSPAYTQVSPAYTQVSL 130
Q A Y+ SP Y+ SPAY+ S
Sbjct: 1655 SYSPTSPSYSPTSPSYSPTSPNYSPSSPNFSPSNQAGGAKYSPTSPQYSPKSPAYSPTSP 1714
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
Y A + SP SP+Y+ SP Y+
Sbjct: 1715 TYNGGGRAASSTSPG----SPSYSPTSPVYS 1741
>gi|386391766|ref|ZP_10076547.1| hypothetical protein DesU5LDRAFT_1142 [Desulfovibrio sp. U5L]
gi|385732644|gb|EIG52842.1| hypothetical protein DesU5LDRAFT_1142 [Desulfovibrio sp. U5L]
Length = 481
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 21/39 (53%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
YT P YTQ P YTQ P YTQ P YTQ YTQ
Sbjct: 367 GYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQ 405
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 21/39 (53%)
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
YTQ YTQ P YTQ P YTQ P YTQ YTQ
Sbjct: 367 GYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQ 405
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 20/39 (51%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
YTQ P YTQ P YTQ P Y P YT P YTQ
Sbjct: 367 GYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQ 405
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 21/39 (53%)
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
YTQ YTQ YTQ P YTQ P YTQ P YTQ
Sbjct: 367 GYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQAQPGYTQ 405
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 18/31 (58%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY 90
P YTQ P YTQ P YTQ P YTQ P Y
Sbjct: 373 PGYTQAQPGYTQAQPGYTQAQPGYTQAQPGY 403
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 62 YTQVSPA-YTQVSP--AYTQVSPAYTQVSPAYI----PVSPAYTPVSPAYTQV-SPA-YT 112
Y+ SPA Y+ SP +Y+ SP Y SP P+SP Y+P SPAYT + SP Y+
Sbjct: 1528 YSPSSPANYSPSSPLGSYSPSSPNYRDYSPTSPLINGPMSPIYSPSSPAYTPMNSPGRYS 1587
Query: 113 QVSPAYTQVSP 123
SPA++ +SP
Sbjct: 1588 PSSPAFSPLSP 1598
Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 33/124 (26%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPA-YTQVSP--AYTQVSPAYT 119
Q SP + SP T ++ + T + +Y P + Y+P SPA Y+ SP +Y+ SP Y
Sbjct: 1495 QYSPYTSAFSPI-TSIASSPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYR 1553
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGR 179
SP ++ +SP Y+ SPAYT ++S PGR
Sbjct: 1554 DYSPTSPLIN-----------------GPMSPIYSPSSPAYTPMNS-----------PGR 1585
Query: 180 ESNS 183
S S
Sbjct: 1586 YSPS 1589
>gi|125590475|gb|EAZ30825.1| hypothetical protein OsJ_14894 [Oryza sativa Japonica Group]
Length = 206
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 85 QVSPAYIPVSPAYTPVSPAYTQV-SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
+VS P SP YTP SP + + SP YT SP SP Y+ S S YT +S
Sbjct: 51 EVSSCCPPPSPDYTPASPPHRRAASPDYTPESPPRRAASPDYSPASPPRRAASPDYTPMS 110
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYT 168
P SP YTQ++P S YT
Sbjct: 111 PPGRAASPDYTQMTPPRRAASPDYT 135
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQV-SPAYTQVSPAYTQVSPAYIPVSPA-------YTPV 100
DE + SP YT SP + + SP YT SP SP Y P SP YTP+
Sbjct: 50 DEVSSCCPPPSPDYTPASPPHRRAASPDYTPESPPRRAASPDYSPASPPRRAASPDYTPM 109
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYT 126
SP SP YTQ++P SP YT
Sbjct: 110 SPPGRAASPDYTQMTPPRRAASPDYT 135
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
118893]
Length = 1748
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 44/147 (29%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPA--------------- 96
+ SPA++ SP++ SPAY+ SP Y Q SP+Y P SP
Sbjct: 1600 FISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1659
Query: 97 ------YTPVSPAYTQVSPAYTQV----------SPAYTQVSPAYTQVS-LAYTQVSLAY 139
++P SP+Y+ SPA SP YT SP ++ S AY+ S +
Sbjct: 1660 SPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNF 1719
Query: 140 TQ--------VSPAYTQVSPAYTQVSP 158
+ SP Y+ SP + SP
Sbjct: 1720 SGSPTSPGGPTSPGYSPTSPTFNPTSP 1746
Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 81 PAYTQVSPAYIPVSPA--YTPVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
P+Y SP + P SP Y+P SP T SPAY+ S Y+ SP + S +
Sbjct: 1548 PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAYSP-SSGYSPTSPGMSITSPRFIS--- 1602
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPA++ SP++ SPAY+ S Y Q
Sbjct: 1603 -----SPAFSPASPSFAPTSPAYSPTSPGYGQ 1629
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 44/147 (29%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPA--------------- 96
+ SPA++ SP++ SPAY+ SP Y Q SP+Y P SP
Sbjct: 1600 FISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1659
Query: 97 ------YTPVSPAYTQVSPAYTQV----------SPAYTQVSPAYTQVS-LAYTQVSLAY 139
++P SP+Y+ SPA SP YT SP ++ S AY+ S +
Sbjct: 1660 SPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNF 1719
Query: 140 TQ--------VSPAYTQVSPAYTQVSP 158
+ SP Y+ SP + SP
Sbjct: 1720 SGSPTSPGGPTSPGYSPTSPTFNPTSP 1746
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 81 PAYTQVSPAYIPVSPA--YTPVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
P+Y SP + P SP Y+P SP T SPAY+ S Y+ SP + S +
Sbjct: 1548 PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAYSP-SSGYSPTSPGMSITSPRFIS--- 1602
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPA++ SP++ SPAY+ S Y Q
Sbjct: 1603 -----SPAFSPASPSFAPTSPAYSPTSPGYGQ 1629
>gi|383847170|ref|XP_003699228.1| PREDICTED: uncharacterized protein LOC100880738 [Megachile rotundata]
Length = 1532
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP SP Y Q SP +SP P+SP P +SP Q+SP Q+S
Sbjct: 1103 SPLRRPPSPIYRQRSPVRCEISPLRRPLSPPRRTDMPLNRPMSPLRRQISPPRQQISPMR 1162
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNK---IRPGRESNS---RSS 186
+ +S Q SP VSP Q+ P+ ++ S +++L++ I R+ S R
Sbjct: 1163 STMS-PRRQPSPMRRPVSPPRRQI-PSPNRMMSGRQEMLLSRRQVILQDRQQTSTMRREE 1220
Query: 187 AYEAFFHE 194
+ +AF E
Sbjct: 1221 SSKAFMPE 1228
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSP--------------AYTQVSPAYIPVSPAYTPVSPA 103
+SP Q+SP +++P ++SP SP P SP Y SP
Sbjct: 1061 MSPMRRQISPIIHRLTPP-KRLSPKRPLLSPPRRPCSPPRRHFSPLRRPPSPIYRQRSPV 1119
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
++SP +SP P +S Q+S Q+SP + +SP Q SP V
Sbjct: 1120 RCEISPLRRPLSPPRRTDMPLNRPMSPLRRQISPPRQQISPMRSTMSPR-RQPSPMRRPV 1178
Query: 164 SSAYTQV-ILNKIRPGRE 180
S Q+ N++ GR+
Sbjct: 1179 SPPRRQIPSPNRMMSGRQ 1196
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
Y P SP Y+P SP Y+ +P Y+ SP+Y+ SP Y
Sbjct: 1870 YTPTSPNYSPSSPTYSPAAPGYSPTSPSYSPTSPTY 1905
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
YT SP Y+ SP Y+ +P Y+ SP+Y P SP Y P
Sbjct: 1870 YTPTSPNYSPSSPTYSPAAPGYSPTSPSYSPTSPTYEP 1907
Score = 45.1 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 18/70 (25%)
Query: 65 VSPAYTQ------------------VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
+SP Y+ + + +SP Y+ SPAY P SP+ TP SP Y+
Sbjct: 1553 LSPGYSPWSPQISSPSSPGPSMSPYIPSPVSGLSPNYSPSSPAYAPTSPSLTPSSPNYSP 1612
Query: 107 VSPAYTQVSP 116
SP+Y+ SP
Sbjct: 1613 TSPSYSPTSP 1622
Score = 44.3 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
Y SP + +SP Y+ SPAY SP+ T SP Y P SP+Y+P SP
Sbjct: 1577 YIPSPV-SGLSPNYSPSSPAYAPTSPSLTPSSPNYSPTSPSYSPTSP--- 1622
Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
+ V +SP Y+ SPAY SP+ T SP Y+ SP+Y P SP Y+P
Sbjct: 1580 SPVSGLSPNYSPSSPAYAPTSPSLTPSSPNYSPTSPSYSPTSPNYSP 1626
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
YTP SP Y+ SP Y+ +P Y+ SP+Y+ S Y
Sbjct: 1870 YTPTSPNYSPSSPTYSPAAPGYSPTSPSYSPTSPTY 1905
Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP 92
T SP Y+ SP Y+ +P Y+ SP+Y+ SP Y P
Sbjct: 1869 TYTPTSPNYSPSSPTYSPAAPGYSPTSPSYSPTSPTYEP 1907
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
YT SP Y+ SP SPA +P Y+P SP+Y+ SP Y
Sbjct: 1870 YTPTSPNYSPSSP---TYSPA----APGYSPTSPSYSPTSPTY 1905
>gi|417411558|gb|JAA52210.1| Putative c2h2-type zn-finger protein, partial [Desmodus rotundus]
Length = 547
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP + SP + SP + S +P SP + P SP SP + SP Y SP Y
Sbjct: 90 SPGFEPQSPEFEPESPGFESQSSGLVPPSPEFAPRSPESESQSPEFEPQSPRYEPQSPGY 149
Query: 126 TQVSLAYTQVSLAYTQVSPAY 146
SL Y + + SP +
Sbjct: 150 ESQSLGYGLQNPEFKTQSPEF 170
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 47/143 (32%), Gaps = 32/143 (22%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP + SP + SP + S P SP + SP SP + SP Y S Y
Sbjct: 90 SPGFEPQSPEFEPESPGFESQSSGLVPPSPEFAPRSPESESQSPEFEPQSPRYEPQSPGY 149
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAFF 192
SL Y +P + SP + A + F
Sbjct: 150 ESQSLGYGLQNPEFKTQSPEF--------------------------------EAQNSKF 177
Query: 193 HEWVWMSWYPDINPTLPIAMGVH 215
E M P+ +L + +GVH
Sbjct: 178 QEGTEMPLNPEEKNSLSLPLGVH 200
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + S SP + SP SP + P SP Y P SP Y S Y +P +
Sbjct: 104 SPGFESQSSGLVPPSPEFAPRSPESESQSPEFEPQSPRYEPQSPGYESQSLGYGLQNPEF 163
Query: 119 TQVSPAY 125
SP +
Sbjct: 164 KTQSPEF 170
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + S SP + P SP SP + SP Y SP Y
Sbjct: 90 SPGFEPQSPEFEPESPGFESQSSGLVPPSPEFAPRSPESESQSPEFEPQSPRYEPQSPGY 149
Query: 119 TQVSPAY 125
S Y
Sbjct: 150 ESQSLGY 156
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 64/99 (64%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPAY+ SP+Y+ SP+Y+ SP+Y+
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
S +Y+ S +Y+ SP+Y+ SPAY+ SPAY+ S A
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1661
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 65/99 (65%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SP+Y+ SP+Y+
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ S +Y+ S +Y+ SPAY+ SPAY+ SPA
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1661
Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 63/94 (67%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SPAY P SP+Y+P SP+Y+ SP+Y+ SP+Y
Sbjct: 1568 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1627
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ SP+Y+ S +Y+ S AY+ SPAY+ SPA
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1661
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
Y+ SP Y P SP Y+P SP Y+ SP Y+ SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 47.4 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
Y P SP Y+P SP Y+ SP Y+ SP Y+ SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 45.4 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 64/99 (64%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SP+Y+ SP+Y+
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ S +Y+ S +Y+ SP Y+ SPAY+ SPA
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPA 1661
Score = 40.0 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 44/94 (46%), Positives = 62/94 (65%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SPAY P SP+Y+P SP+Y+ SP+Y+ SP+Y
Sbjct: 1568 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1627
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ SP+Y+ S +Y+ S Y+ SPAY+ SPA
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPA 1661
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 64/99 (64%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPAY+ SP+Y+ SP+Y+ SP+Y+
Sbjct: 1558 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1617
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
S +Y+ S +Y+ SP+Y+ SPAY+ SPAY+ S A
Sbjct: 1618 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1656
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 65/99 (65%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SP+Y+ SP+Y+
Sbjct: 1558 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1617
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ S +Y+ S +Y+ SPAY+ SPAY+ SPA
Sbjct: 1618 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1656
Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 63/94 (67%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SPAY P SP+Y+P SP+Y+ SP+Y+ SP+Y
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ SP+Y+ S +Y+ S AY+ SPAY+ SPA
Sbjct: 1623 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1656
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
Y+ SP Y P SP Y+P SP Y+ SP Y+ SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 44.3 bits (103), Expect = 0.035, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPAY+ SP+Y+ SP+Y+ S +Y+
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 135 VSLAYTQVSPAYTQVSPAYTQVSPA 159
S +Y+ SP+Y+ SPAY+ SPA
Sbjct: 1623 TSPSYSPTSPSYSPTSPAYSPTSPA 1647
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1601
Score = 37.4 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP 92
SP Y+ SP Y+ SP Y+ SP Y+ SPAY P
Sbjct: 1568 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1601
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
Y+ SP Y P SP Y+P SP Y+ SP Y+ SPA
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1598
Score = 42.4 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P
Sbjct: 1563 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1601
Score = 37.4 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP 92
SP Y+ SP Y+ SP Y+ SP Y+ SPAY P
Sbjct: 1568 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1601
>gi|320163004|gb|EFW39903.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1201
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 64/113 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A +VS A +VS A +VS A +VS A VS A VS A +VS A +VS A
Sbjct: 373 VSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSA 432
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+VS A +VS A +VS A +VS A +VS A +VS A +VSSA +V
Sbjct: 433 TPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEV 485
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 62/109 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS A +VS A +VS A +VS A +VS A VS A VS A +VS A +VS A
Sbjct: 380 VSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSA 439
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+VS A +VS A +VS A +VS A +VS A +VS A +VSSA
Sbjct: 440 TPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSATPEVSSA 488
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVSPAY 111
+ SPA++ SP++ SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1513 FISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1572
Query: 112 TQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQ-VSPAYTQVSPAYTQVSP-AYTQVSSAY 167
+ SP ++ SP+Y+ S L T L+ T SP YT SP ++ SP AY+ S +
Sbjct: 1573 SPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNF 1632
Query: 168 T 168
+
Sbjct: 1633 S 1633
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 81 PAYTQVSPAYIPVSPA--YTPVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
P+Y SP + P SP Y+P SP T SPAY+ S Y+ SP + S +
Sbjct: 1461 PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAYSP-SSGYSPTSPGMSITSPRFIS--- 1515
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPA++ SP++ SPAY+ S Y Q
Sbjct: 1516 -----SPAFSPASPSFAPTSPAYSPTSPGYGQ 1542
>gi|225164586|ref|ZP_03726833.1| hypothetical protein ObacDRAFT_6177 [Diplosphaera colitermitum
TAV2]
gi|224800802|gb|EEG19151.1| hypothetical protein ObacDRAFT_6177 [Diplosphaera colitermitum
TAV2]
Length = 209
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP SP SP + SP + SP
Sbjct: 18 SPVTGERSPVTGEYSPVMGERSPVTGERSPVTGEYSPVMGECSPVMGECSPVTGECSPVV 77
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SP + S + S + SP + SP ++SP ++S
Sbjct: 78 GERSPVTGEYSPVVGECSPVTGECSPVTGECSPVMGELSPVAGELS 123
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP SP SP + SP + SP
Sbjct: 11 SPVMGERSPVTGERSPVTGEYSPVMGERSPVTGERSPVTGEYSPVMGECSPVMGECSPVT 70
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SP + S + S + SP + SP + SP ++S
Sbjct: 71 GECSPVVGERSPVTGEYSPVVGECSPVTGECSPVTGECSPVMGELS 116
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 45/113 (39%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP + SP + SP + SP + SP SP SP + SP + SP
Sbjct: 3 VSPVAGEHSPVMGERSPVTGERSPVTGEYSPVMGERSPVTGERSPVTGEYSPVMGECSPV 62
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ SP + S + S + SP + SP + SP + S ++
Sbjct: 63 MGECSPVTGECSPVVGERSPVTGEYSPVVGECSPVTGECSPVTGECSPVMGEL 115
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP SP SP + SP + SP
Sbjct: 32 SPVMGERSPVTGERSPVTGEYSPVMGECSPVMGECSPVTGECSPVVGERSPVTGEYSPVV 91
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ SP + S + S ++SP ++S +++ TQ+ AY V
Sbjct: 92 GECSPVTGECSPVTGECSPVMGELSPVAGELS----EMTGEGTQLPEAYCLV 139
>gi|330916513|ref|XP_003297442.1| hypothetical protein PTT_07860 [Pyrenophora teres f. teres 0-1]
gi|311329836|gb|EFQ94444.1| hypothetical protein PTT_07860 [Pyrenophora teres f. teres 0-1]
Length = 621
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
DE T +SP + SP Y SP Y SP Q+SP Y PVSP Y+P SP SP
Sbjct: 440 DEHTYIPMSPVWAPASPGYAPTSPGYVPTSP---QLSPGYSPVSPGYSPTSP----TSPG 492
Query: 111 YTQVS 115
Y S
Sbjct: 493 YNSRS 497
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 69 YTQVSPAYTQVSPAY-TQVSPAYIPVSPAYTPVSPAYTQVSPAYT----QVSPAYTQVSP 123
Y S Y SP++ T YIP+SP + P SP Y SP Y Q+SP Y+ VSP
Sbjct: 422 YEPTSTGYAPTSPSHETTDEHTYIPMSPVWAPASPGYAPTSPGYVPTSPQLSPGYSPVSP 481
Query: 124 AYT 126
Y+
Sbjct: 482 GYS 484
>gi|449475783|ref|XP_002194636.2| PREDICTED: methyltransferase-like protein 22 [Taeniopygia guttata]
Length = 685
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 51/74 (68%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ 155
A + VS A ++VS A ++VS ++VS A ++VSLA ++VSLA +++ A +++ A ++
Sbjct: 115 ALSEVSLAVSKVSLAVSEVSRGVSEVSRAVSEVSLAVSEVSLAVSELFWAVSELFWAVSE 174
Query: 156 VSPAYTQVSSAYTQ 169
VS A ++VS A ++
Sbjct: 175 VSLAVSEVSWAVSE 188
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A ++VSLA ++VSLA ++VS ++VS A ++VS A ++VS A +++
Sbjct: 115 ALSEVSLAVSKVSLAVSEVSRGVSEVSRAVSEVSLAVSEVSLAVSEL 161
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI----------------PVSPAYTPVS 101
V+P+Y+ SP Y+ SP Y+ SPAY+Q Y P SP YTP S
Sbjct: 1704 VTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGS 1762
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P Y+ SP Y+ SP Y+ SP ++ + Y+ Y+ SP Y+ Y+ S Y+
Sbjct: 1763 PQYSPASPKYSPTSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNMSIYSPSSTKYS 1821
Query: 162 QVSSAYTQVILN 173
S YT N
Sbjct: 1822 PTSPTYTPTARN 1833
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1715 YSASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1774
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
SP Y+P SP ++ + Y+ Y+ SP Y+ Y+ S Y+ SP YT +
Sbjct: 1775 TSPLYSPSSPQHSPSN-QYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARN 1833
Query: 153 YTQVSPAYT 161
Y+ SP Y+
Sbjct: 1834 YSPTSPMYS 1842
>gi|242213367|ref|XP_002472512.1| predicted protein [Postia placenta Mad-698-R]
gi|220728403|gb|EED82298.1| predicted protein [Postia placenta Mad-698-R]
Length = 779
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 12 GTLTVEIFLLVFLLLNVLSYILIEKFKRKDLED---YLSTDEDEATVYTVSPAYTQVSPA 68
G L + ++ L E+ +R+ E Y + +T PA +PA
Sbjct: 524 GLLPLPGKVVGPLAKKAPREKPGEQAERRHSEPPPPYTPDSGQPSVAHTAHPAGNVAAPA 583
Query: 69 YTQVSPAY--------TQV-SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA+ Q+ SPA+ SPA+ SPA+ SPA+ SPA+ PA+
Sbjct: 584 RRVAEPAHLTPGRRMGVQIASPAHHTASPAHFIASPAHHTASPAHHTASPAHHTAGPAHR 643
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SPA+ A Q Q +PA Q P
Sbjct: 644 TASPAHYAAEPAGVQTGQPVGQTAPAADQSVP 675
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 12/151 (7%)
Query: 21 LVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVS 80
L+ L V+ + + + K E + YT P Q S A+T PA +
Sbjct: 525 LLPLPGKVVGPLAKKAPREKPGEQAERRHSEPPPPYT--PDSGQPSVAHT-AHPAGNVAA 581
Query: 81 PAYTQVSPAYIP---------VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
PA PA++ SPA+ SPA+ SPA+ SPA+ SPA+ A
Sbjct: 582 PARRVAEPAHLTPGRRMGVQIASPAHHTASPAHFIASPAHHTASPAHHTASPAHHTAGPA 641
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+ S A+ PA Q Q +PA Q
Sbjct: 642 HRTASPAHYAAEPAGVQTGQPVGQTAPAADQ 672
>gi|451942557|ref|YP_007463194.1| hypothetical protein BVwin_13310 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451901944|gb|AGF76406.1| hypothetical protein BVwin_13310 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 490
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA + A +V+PA + A +V+PA A V+PA + A +V+PA
Sbjct: 50 TPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAA 109
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ A +V+ A + A +V+PA + A +V+PA
Sbjct: 110 DKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPA 150
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V V+PA + A +V+PA + A +V+PA A V+PA + A +
Sbjct: 59 AVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKE 118
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V+PA + A +V+ A + A +V+PA + + +P + A +V
Sbjct: 119 VAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEEVKEAAPVADKAVEAVKEV 175
Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
+ +PA + A +V+PA + A V+PA A +V+PA + A +V+
Sbjct: 47 NETTPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVA 106
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
PA + A +V+ A + A +V+PA + A +V+ A + +
Sbjct: 107 PAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAV 155
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
V V+PA + A +V+PA + A +V+PA A V+PA + A +
Sbjct: 73 AVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKE 132
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
V+PA + A +V+ A + + +P + A +V+PA
Sbjct: 133 VAPAADKAVEAVKEVAPAADKAVEEVKEAAPVADKAVEAVKEVAPA 178
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
+ S + +PA + A +V+PA A V+PA + A +V+PA +
Sbjct: 41 KASTVANETTPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVE 100
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A +V+ A + A +V+PA + A +V+PA + A +V
Sbjct: 101 AVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEV 147
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A +V+PA + A +V+PA + A V+PA A +V+PA + A +
Sbjct: 73 AVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKE 132
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
V+PA + A +V+ A + + +P + A +V+ A + +
Sbjct: 133 VAPAADKAVEAVKEVAPAADKAVEEVKEAAPVADKAVEAVKEVAPAADKAV 183
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
+Q SP+ + S + +PA + A V+PA A +V+PA + A +V+
Sbjct: 34 SQYSPS-DKASTVANETTPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVA 92
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
PA + A +V+ A + A +V+PA + A +V+ A + +
Sbjct: 93 PAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAVEAVKEVAPAADKAV 141
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton equinum
CBS 127.97]
Length = 1712
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVSPAY 111
+ SPA++ SP++ SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1568 FISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1627
Query: 112 TQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQ-VSPAYTQVSPAYTQVSP-AYTQVSSAY 167
+ SP ++ SP+Y+ S L T L+ T SP YT SP ++ SP AY+ S +
Sbjct: 1628 SPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNF 1687
Query: 168 T 168
+
Sbjct: 1688 S 1688
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 81 PAYTQVSPAYIPVSPA--YTPVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
P+Y SP + P SP Y+P SP T SPAY+ S Y+ SP + S +
Sbjct: 1516 PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAYSP-SSGYSPTSPGMSITSPRFIS--- 1570
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPA++ SP++ SPAY+ S Y Q
Sbjct: 1571 -----SPAFSPASPSFAPTSPAYSPTSPGYGQ 1597
>gi|410461964|ref|ZP_11315577.1| hypothetical protein B193_0069 [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409984916|gb|EKO41192.1| hypothetical protein B193_0069 [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 375
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+PA+ Q ++Q P + Q +PA+ Q + A+ Q + A+ Q +PA+ Q +PA+ Q +PA
Sbjct: 157 AAPAFGQPQ-GFSQPQPGFAQPAPAFGQPAPAFGQPAPAFGQPAPAFGQPAPAFGQPAPA 215
Query: 160 Y 160
+
Sbjct: 216 F 216
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 74 PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
P Q +PA+ Q ++Q P + Q +PA+ Q +PA+ Q + A+
Sbjct: 152 PGQPQAAPAFGQPQ---------------GFSQPQPGFAQPAPAFGQPAPAFGQPAPAFG 196
Query: 134 QVSLAYTQVSPAYTQVSPAY 153
Q + A+ Q +PA+ Q +PA+
Sbjct: 197 QPAPAFGQPAPAFGQPAPAF 216
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+PA+ Q ++Q P + Q +PA+ Q +PA+ +PA+ +PA+ Q +PA+ Q +PA
Sbjct: 157 AAPAFGQPQ-GFSQPQPGFAQPAPAFGQPAPAFGQPAPAFGQPAPAFGQPAPAFGQPAPA 215
Query: 118 Y 118
+
Sbjct: 216 F 216
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVS 108
++ + SPA++ SP++ SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ S
Sbjct: 1597 SSRFISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTS 1656
Query: 109 PAYTQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQ-VSPAYTQVSPAYTQVSP-AYTQVS 164
P+++ SP ++ SP+Y+ S L T L+ T SP YT SP ++ SP AY+ S
Sbjct: 1657 PSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTS 1716
Query: 165 SAYT 168
++
Sbjct: 1717 PNFS 1720
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 81 PAYTQVSPAYIPVSPA--YTPVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
P+Y SP + P SP Y+P SP T SPAY+ S Y+ SP + S +
Sbjct: 1548 PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAYSP-SSGYSPTSPGMSITSSRFIS--- 1602
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPA++ SP++ SPAY+ S Y Q
Sbjct: 1603 -----SPAFSPASPSFAPTSPAYSPTSPGYGQ 1629
>gi|449276657|gb|EMC85095.1| hypothetical protein A306_06535, partial [Columba livia]
Length = 137
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/117 (17%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 62 YTQVSPAYTQVS----PAYTQVSP---AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
++ +SP + +S P +T P + +S + P+S + P+S + +S + +
Sbjct: 1 FSPISPPFCPISAPFFPIFTSFCPISAPFCPISAPFCPISAPFCPISAPFCPISAPFCPI 60
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
S + +S + +S + +S + +S + +SP + +SP + + + + +
Sbjct: 61 SAPFCPISAPFCPISAPFCPISAPFCPISAPFCPISPQFFLISPPFCPIPAPFCPFL 117
>gi|21755668|dbj|BAC04732.1| unnamed protein product [Homo sapiens]
Length = 454
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+SP Y+ VSP + +SP +SP Y+ VSP + +SP Y+P+SP +SP Y+ VSP
Sbjct: 8 MSPHYSLVSPHHLLMSPHRLLMSPHYSLVSPHRLLMSPHYSPMSPHRLLMSPHYSLVSPH 67
Query: 118 YTQVSPAYTQV 128
+SP + V
Sbjct: 68 RLLMSPLLSGV 78
>gi|331245771|ref|XP_003335521.1| hypothetical protein PGTG_16964 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 742
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 66/116 (56%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT+ + YT+ YT+++ YT+++ + + YT YT+++ T+++ YT++
Sbjct: 323 YTEPATEYTEPVTDYTELATDYTELAINHTEPATEYTEPVTEYTELATELTELATDYTEL 382
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
+ +T+ + YT+ YT+++ Y +++ T+ + YT+ + YT+++ ++ P
Sbjct: 383 AINHTEPATEYTEPVTDYTELAKDYMELATDCTEPATEYTEPETDYTELVTDQTEP 438
>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
Length = 1146
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y SP + SP Y+ SP Y+ SP P SP Y+P SP Y+ SP Y+ SP Y+
Sbjct: 1072 YAPRSPGFPS-SPGYSPASPQYSPASPGG-PTSPTYSPSSPGYSPTSPTYSPTSPKYSPA 1129
Query: 122 SPAYT 126
S Y+
Sbjct: 1130 SSGYS 1134
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y SP + SP Y+ SP Y P SP P SP Y+ SP Y+ SP Y+ SP Y+
Sbjct: 1072 YAPRSPGFPS-SPGYSPASPQYSPASPG-GPTSPTYSPSSPGYSPTSPTYSPTSPKYSPA 1129
Query: 129 SLAYT 133
S Y+
Sbjct: 1130 SSGYS 1134
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPA--YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
SPA ++ S SP + P +PA Y P SP + SP Y+ SP Y+ SP
Sbjct: 1047 SPAASETSGFSPSYSPGWSP-NPASPYAPRSPGFPS-SPGYSPASPQYSPASPG------ 1098
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
S Y+ SP Y+ SP Y+ SP Y+ SS Y+
Sbjct: 1099 --GPTSPTYSPSSPGYSPTSPTYSPTSPKYSPASSGYS 1134
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
SP Y+ SP Y+ SP SP Y+ SP Y P SP Y+P SP + SPA + SP
Sbjct: 1082 SPGYSPASPQYSPASPG-GPTSPTYSPSSPGYSPTSPTYSPTSP---KYSPASSGYSP 1135
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
SP Y+ SP Y+ SP SP Y P SP Y+P SP Y+ SP + SPA + SP
Sbjct: 1082 SPGYSPASPQYSPASPG-GPTSPTYSPSSPGYSPTSPTYSPTSP---KYSPASSGYSP 1135
>gi|357617708|gb|EHJ70948.1| hypothetical protein KGM_14786 [Danaus plexippus]
Length = 745
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 32 ILIEKFKRKDLEDYLSTDEDEATVYTVS 59
ILIEKF+R+D EDY + DEDE VY +S
Sbjct: 36 ILIEKFRRRDSEDYFTADEDEVKVYRIS 63
>gi|357237004|ref|ZP_09124347.1| agglutinin receptor domain protein [Streptococcus criceti HS-6]
gi|356884986|gb|EHI75186.1| agglutinin receptor domain protein [Streptococcus criceti HS-6]
Length = 482
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 35/119 (29%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
D+D+AT T Y Q Y Y Q AY Y AY Y Q
Sbjct: 204 DQDKATYDTAKLKYNQDKAVYDTAKNKYDQDKVAYGIAKAEYDRAKAAYDTAKAKYDQDK 263
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
AY Y Q Y Y Q AY Y Q AY Y Q Y
Sbjct: 264 AAYNTAKNKYDQDKAVYDTAKAKYDQDKAAYDTAKAKYDQDKAAYDTAKAKYDQDKHTY 322
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 34/119 (28%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
D+D+A Y Q Y Y Q Y Y AY Y +
Sbjct: 190 DQDKAAYDIAKVKYDQDKATYDTAKLKYNQDKAVYDTAKNKYDQDKVAYGIAKAEYDRAK 249
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
AY Y Q AY Y Q Y Y Q AY Y Q +AY
Sbjct: 250 AAYDTAKAKYDQDKAAYNTAKNKYDQDKAVYDTAKAKYDQDKAAYDTAKAKYDQDKAAY 308
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 34/117 (29%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
L ++D+A T Y Q AY Y + AY Y AY Y
Sbjct: 215 LKYNQDKAVYDTAKNKYDQDKVAYGIAKAEYDRAKAAYDTAKAKYDQDKAAYNTAKNKYD 274
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Q Y Y Q AY Y Q AY Y Q Y Y Q
Sbjct: 275 QDKAVYDTAKAKYDQDKAAYDTAKAKYDQDKAAYDTAKAKYDQDKHTYDLDKELYDQ 331
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 34/119 (28%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
D+D+A Y Q AY Y Q Y Y Y Y Q
Sbjct: 176 DQDKAAYDIAKSQYDQDKAAYDIAKVKYDQDKATYDTAKLKYNQDKAVYDTAKNKYDQDK 235
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
AY Y + AY Y Q AY Y Q Y Y Q +AY
Sbjct: 236 VAYGIAKAEYDRAKAAYDTAKAKYDQDKAAYNTAKNKYDQDKAVYDTAKAKYDQDKAAY 294
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVSPAY 111
+ SPA++ SP++ SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1600 FISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1659
Query: 112 TQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQ-VSPAYTQVSPAYTQVSP-AYTQVSSAY 167
+ SP ++ SP+Y+ S L T L+ T SP YT SP ++ SP AY+ S +
Sbjct: 1660 SPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNF 1719
Query: 168 T 168
+
Sbjct: 1720 S 1720
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 81 PAYTQVSPAYIPVSPA--YTPVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
P+Y SP + P SP Y+P SP T SPAY+ S Y+ SP + S +
Sbjct: 1548 PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAYSP-SSGYSPTSPGMSITSPRFIS--- 1602
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPA++ SP++ SPAY+ S Y Q
Sbjct: 1603 -----SPAFSPASPSFAPTSPAYSPTSPGYGQ 1629
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 45.8 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 56/85 (65%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQ 134
Y+ SP Y+ SP Y P SP Y+P SPAY+ SP+Y+ SP+Y+ SP+Y+ S +Y+
Sbjct: 1563 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 135 VSLAYTQVSPAYTQVSPAYTQVSPA 159
S +Y+ SPAY+ SPAY+ SPA
Sbjct: 1623 TSPSYSPTSPAYSPTSPAYSPTSPA 1647
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
Y+ SP Y P SP Y+P SP Y+ SPAY+ SP+Y+ SP+Y+ S +Y+ S +Y+
Sbjct: 1563 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 142 VSPAYTQVSPAYTQVSPAYTQVSSA 166
SP+Y+ SPAY+ SPAY+ S A
Sbjct: 1623 TSPSYSPTSPAYSPTSPAYSPTSPA 1647
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 56/85 (65%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SP+Y+ SP+Y+ SP+Y+
Sbjct: 1563 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1622
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPA 152
S +Y+ S AY+ SPAY+ SPA
Sbjct: 1623 TSPSYSPTSPAYSPTSPAYSPTSPA 1647
Score = 36.6 bits (83), Expect = 6.8, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 35/80 (43%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-----------------------------------Y 83
SP Y+ SP Y+ SP Y+ SPA Y
Sbjct: 1568 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1627
Query: 84 TQVSPAYIPVSPAYTPVSPA 103
+ SPAY P SPAY+P SPA
Sbjct: 1628 SPTSPAYSPTSPAYSPTSPA 1647
>gi|440802448|gb|ELR23377.1| Poly(ADPribose) polymerase, putative [Acanthamoeba castellanii str.
Neff]
Length = 2693
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%)
Query: 79 VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
++P S +Y P SP Y+P SP Y+ SP+Y+ SP Y SP Y S +Y+ S
Sbjct: 2153 LAPLVVASSHSYSPTSPTYSPSSPRYSPTSPSYSPTSPTYAPSSPTYAPSSPSYSPTSPT 2212
Query: 139 YTQVSPAYTQVSPAYTQVSPAYT 161
Y SP Y+ SP Y SP Y+
Sbjct: 2213 YAPSSPIYSPTSPTYAPSSPTYS 2235
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%)
Query: 72 VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
++P S +Y+ SP Y P SP Y+P SP+Y+ SP Y SP Y SP+Y+ S
Sbjct: 2153 LAPLVVASSHSYSPTSPTYSPSSPRYSPTSPSYSPTSPTYAPSSPTYAPSSPSYSPTSPT 2212
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
Y S Y+ SP Y SP Y+ SP +
Sbjct: 2213 YAPSSPIYSPTSPTYAPSSPTYSPTSPTH 2241
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY--------------IPVSPAYTPVSPAY 104
SP Y+ SP Y+ SP+Y+ SP Y SP Y P SP Y+P SP Y
Sbjct: 2168 SPTYSPSSPRYSPTSPSYSPTSPTYAPSSPTYAPSSPSYSPTSPTYAPSSPIYSPTSPTY 2227
Query: 105 TQVSPAYTQVSPAY 118
SP Y+ SP +
Sbjct: 2228 APSSPTYSPTSPTH 2241
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV---------- 107
++P S +Y+ SP Y+ SP Y+ SP+Y P SP Y P SP Y
Sbjct: 2153 LAPLVVASSHSYSPTSPTYSPSSPRYSPTSPSYSPTSPTYAPSSPTYAPSSPSYSPTSPT 2212
Query: 108 ----SPAYTQVSPAYTQVSPAYT 126
SP Y+ SP Y SP Y+
Sbjct: 2213 YAPSSPIYSPTSPTYAPSSPTYS 2235
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV-------------- 100
V S +Y+ SP Y+ SP Y+ SP+Y+ SP Y P SP Y P
Sbjct: 2157 VVASSHSYSPTSPTYSPSSPRYSPTSPSYSPTSPTYAPSSPTYAPSSPSYSPTSPTYAPS 2216
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAY 125
SP Y+ SP Y SP Y+ SP +
Sbjct: 2217 SPIYSPTSPTYAPSSPTYSPTSPTH 2241
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
++P S +Y+ SP Y+ SP Y P SP+Y+P SP Y SP Y SP+Y+ SP
Sbjct: 2153 LAPLVVASSHSYSPTSPTYSPSSPRYSPTSPSYSPTSPTYAPSSPTYAPSSPSYSPTSPT 2212
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
Y S Y+ S Y SP Y+ SP +
Sbjct: 2213 YAPSSPIYSPTSPTYAPSSPTYSPTSPTH 2241
>gi|50548685|ref|XP_501812.1| YALI0C13970p [Yarrowia lipolytica]
gi|49647679|emb|CAG82123.1| YALI0C13970p [Yarrowia lipolytica CLIB122]
Length = 658
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
+ SPA + SPA + SPA + SPA +P SPA SPA + SPA + SPA + S
Sbjct: 563 EKSPAQAEKSPAQAEKSPAQAEKSPAQVPEKSPAQAEKSPAQAEKSPAQAEKSPAQAEKS 622
Query: 123 PA 124
PA
Sbjct: 623 PA 624
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 53 ATVYTVSPAYTQVSPAYT-QVSPAYTQVSPAYTQVSPAYIPVSPAYTP-VSPAYTQVSPA 110
A V SPA + SPA + SPA + SPA + SPA SPA P SPA + SPA
Sbjct: 544 AQVPEKSPAQAEKSPAQVPEKSPAQAEKSPAQAEKSPAQAEKSPAQVPEKSPAQAEKSPA 603
Query: 111 YTQVSPAYTQVSPAYTQVSLA 131
+ SPA + SPA + S A
Sbjct: 604 QAEKSPAQAEKSPAQAEKSPA 624
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 71 QVSPAYT-QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
+ SPA + SPA + SPA +P SPA + SPA + SPA + SPA
Sbjct: 540 EKSPAQVPEKSPAQAEKSPAQVPEK------SPAQAEKSPAQAEKSPAQAEKSPAQ---- 589
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ S A + SPA + SPA + SPA + S A
Sbjct: 590 --VPEKSPAQAEKSPAQAEKSPAQAEKSPAQAEKSPA 624
>gi|241164498|ref|XP_002409482.1| mucin-1, putative [Ixodes scapularis]
gi|215494555|gb|EEC04196.1| mucin-1, putative [Ixodes scapularis]
Length = 300
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 37/102 (36%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
P T SP T SP T SP P T SP T SP T SP T SP T
Sbjct: 7 PGATSASPGATLASPRPTSASPGTALAGPGPTSASPGPTSASPRPTSASPGATLASPRPT 66
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
S T SP T SP T SP SS T
Sbjct: 67 SASPGTALAGPGPTSASPGPTSASPRPTSASPGAALASSRPT 108
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 38/112 (33%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P T SP T SP T SP P SP T SP T SP T SP T
Sbjct: 7 PGATSASPGATLASPRPTSASPGTALAGPGPTSASPGPTSASPRPTSASPGATLASPRPT 66
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
SP T S T SP T SP S T S T I
Sbjct: 67 SASPGTALAGPGPTSASPGPTSASPRPTSASPGAALASSRPTSPSPGPTSAI 118
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 37/105 (35%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+ SP T SP T SP P T SP SP T SP T SP T SP
Sbjct: 11 SASPGATLASPRPTSASPGTALAGPGPTSASPGPTSASPRPTSASPGATLASPRPTSASP 70
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P T S T S T SP S T SP T
Sbjct: 71 GTALAGPGPTSASPGPTSASPRPTSASPGAALASSRPTSPSPGPT 115
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV----SPAYIPVSPAYTPVSPAYTQVSPAY 111
+ SPA++ SP++ SPAY+ SP Y Q SP+Y P SP ++P SP+Y+ SP++
Sbjct: 1491 FISSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSF 1550
Query: 112 TQVSPAYTQVSPAYTQVS--LAYTQVSLAYTQ-VSPAYTQVSPAYTQVSP-AYTQVSSAY 167
+ SP ++ SP+Y+ S L T L+ T SP YT SP ++ SP AY+ S +
Sbjct: 1551 SPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPTSPKYTPTSPGWSPTSPEAYSPTSPNF 1610
Query: 168 T 168
+
Sbjct: 1611 S 1611
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 13/92 (14%)
Query: 81 PAYTQVSPAYIPVSPA--YTPVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
P+Y SP + P SP Y+P SP T SPAY+ S Y+ SP + S +
Sbjct: 1439 PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAYSP-SSGYSPTSPGMSITSPRFIS--- 1493
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SPA++ SP++ SPAY+ S Y Q
Sbjct: 1494 -----SPAFSPASPSFAPTSPAYSPTSPGYGQ 1520
>gi|123479742|ref|XP_001323028.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121905884|gb|EAY10805.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 530
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 29/100 (29%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
P V P V P V P V P V P V P V P V P
Sbjct: 316 DPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGN 375
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
V P V V V P V+P V+P
Sbjct: 376 ETVDPGNETVDPGNETVDPGNETVDPGNETVNPGNETVNP 415
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 29/95 (30%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TV P V P V P V P V P V P V P V P V P
Sbjct: 321 TVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDP 380
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
V P V V V+P V+P
Sbjct: 381 GNETVDPGNETVDPGNETVDPGNETVNPGNETVNP 415
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 47/144 (32%), Gaps = 11/144 (7%)
Query: 30 SYILIEKFKRKDL------EDYLSTDE---DEATVYTVSPAYTQVSPAYTQVSPAYTQVS 80
+Y+L E K + + + +TD+ +E ++P+ P V P V
Sbjct: 273 NYVLFEGAKTDGITLSGTTDTFANTDQYITEEKRQAILNPS--NPDPGNETVDPGNETVD 330
Query: 81 PAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT 140
P V P V P V P V P V P V P V V
Sbjct: 331 PGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNETVDPGNE 390
Query: 141 QVSPAYTQVSPAYTQVSPAYTQVS 164
V P V P V+P V+
Sbjct: 391 TVDPGNETVDPGNETVNPGNETVN 414
>gi|66807689|ref|XP_637567.1| type A von Willebrand factor domain-containing protein
[Dictyostelium discoideum AX4]
gi|60465995|gb|EAL64062.1| type A von Willebrand factor domain-containing protein
[Dictyostelium discoideum AX4]
Length = 2563
Score = 45.8 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y S +Y+ VSP+YT S Y P+Y PVSP+Y P P+
Sbjct: 1894 YASTSQSYSPVSPSYTPTSLLYAPTIPSYSPVSPSYAPTKPS 1935
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 34/97 (35%)
Query: 62 YTQVSPAYTQVSPAYTQVSPA----------------------------------YTQVS 87
+ Q S Y+ SP Y SP+ Y S
Sbjct: 1839 FFQASQPYSPTSPFYIPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSTSPLYASTS 1898
Query: 88 PAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
+Y PVSP+YTP S Y P+Y+ VSP+Y P+
Sbjct: 1899 QSYSPVSPSYTPTSLLYAPTIPSYSPVSPSYAPTKPS 1935
>gi|158148|gb|AAA28827.1| RNA polymerase II largest subunit (, EC 2.7.7.6), partial
[Drosophila melanogaster]
Length = 408
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 66/163 (40%), Gaps = 44/163 (26%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 230 TSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPS 288
Query: 99 ----PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP---- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 289 YDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSP 348
Query: 145 ----------AYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
Y+ SP YT + Y+ S Y+ + P
Sbjct: 349 NMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSP 391
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 255 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 314
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 315 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 374
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 375 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 405
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 226 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 284
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 285 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 319
>gi|291222540|ref|XP_002731274.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 348
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP---AYTQVSPAYTQVS 122
SPA T++ V+ ++ I +PA TP S T P A Q+ V
Sbjct: 235 SPAGTKLRDLVKSVTQQAKKLRKNEIHPAPAITPASEPSTLAPPTHAANNQLDAENNHVD 294
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A QV A QV +A Q+ A Q+ A Q+ A Q+ + QV
Sbjct: 295 VANNQVDAANNQVDVANNQLDGANNQLDAANNQLDAANNQLDAENNQV 342
>gi|291239680|ref|XP_002739758.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 556
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 36/104 (34%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
Q S Q S Q S Q S P + VS Q SP Q SP Q SP
Sbjct: 323 QASTKKEQASTKKEQASTKKEQASTKKEPATTKKEKVSAKKVQASPQKEQASPKKEQASP 382
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Q + + S Q SP Q SP + T+ SS
Sbjct: 383 KKEQATTKKEKASPKKEQASPKKEQASPMKEKQETKKTEDSSKK 426
>gi|423711701|ref|ZP_17686006.1| hypothetical protein MCQ_00570, partial [Bartonella washoensis
Sb944nv]
gi|395413368|gb|EJF79838.1| hypothetical protein MCQ_00570, partial [Bartonella washoensis
Sb944nv]
Length = 151
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 48/90 (53%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y S A T SPA T V PA T V PA T +PA V PA T V+PA T V P T S
Sbjct: 39 YDASSAATDASPAATDVPPAATDVPPAATDAAPAATDVPPAATDVAPAATDVPPVATDAS 98
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
PA T V PA T V A T + A T V PA
Sbjct: 99 PAATDVPPAATDVPPAATDAAPAATDVPPA 128
>gi|310118276|ref|XP_001718875.3| PREDICTED: uncharacterized protein LOC100134663, partial [Homo
sapiens]
Length = 454
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 58 VSPAYTQVSPAYT------QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
VSP + VSP + VSP + VSP + +SP Y VSP Y+PVSP VSP Y
Sbjct: 2 VSPHFPLVSPHHPLVSLHHPVSPHFPLVSPHHPLMSPHYSLVSPQYSPVSPHCPLVSPHY 61
Query: 112 TQVSPAYTQVSPAYTQV 128
+ VSP VSP + V
Sbjct: 62 SLVSPHRPLVSPLLSGV 78
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
+ VSP + VSP + +SP Y+ VSP Y+ VSP VSP Y+ VSP VSP + V
Sbjct: 20 HPVSPHFPLVSPHHPLMSPHYSLVSPQYSPVSPHCPLVSPHYSLVSPHRPLVSPLLSGV 78
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 45.1 bits (105), Expect = 0.019, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 34/63 (53%), Gaps = 19/63 (30%)
Query: 57 TVSP-AYTQVSPAYTQVSPA-YTQVSP--------------AYTQVSPAYIPVSPAYTPV 100
T SP AY+ +SPAY SPA Y+ SP AY+ SPAY P SP Y+P
Sbjct: 1540 TFSPGAYSPLSPAY---SPAGYSPASPNYSPSSPTYSPSSPAYSPASPAYSPSSPGYSPA 1596
Query: 101 SPA 103
SPA
Sbjct: 1597 SPA 1599
Score = 44.3 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQV--SP-AYIPVSPAYTPVSPAYTQVSPAYTQV 114
+SP+Y +SP Q SP + SP AY P+SPAY+P
Sbjct: 1512 MSPSYL-LSPNLRASPITDAQFSPYVGGITFSPGAYSPLSPAYSPA-------------- 1556
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ SP Y+ S Y+ S AY+ SPAY+ SP Y+ SPA
Sbjct: 1557 --GYSPASPNYSPSSPTYSPSSPAYSPASPAYSPSSPGYSPASPA 1599
>gi|238059418|ref|ZP_04604127.1| hypothetical protein MCAG_00384 [Micromonospora sp. ATCC 39149]
gi|237881229|gb|EEP70057.1| hypothetical protein MCAG_00384 [Micromonospora sp. ATCC 39149]
Length = 388
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 28/59 (47%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
V PA V PA V PA V PA V PA PV PA PV PA V PA V P
Sbjct: 197 VEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEP 255
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 28/59 (47%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
V PA V PA V PA V PA PV PA PV PA V PA V PA V P
Sbjct: 197 VEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEP 255
Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 26/57 (45%)
Query: 79 VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
V PA V PA PV PA PV PA V PA V PA V PA V A V
Sbjct: 197 VEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPVEPAAEPV 253
>gi|380021467|ref|XP_003694586.1| PREDICTED: uncharacterized protein LOC100867775 [Apis florea]
Length = 1339
Score = 45.1 bits (105), Expect = 0.020, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ----- 113
SP SP +SP Y Q SP +SP P+SP P+SP ++SP T+
Sbjct: 905 SPPRRHFSPLRRPMSP-YRQRSPIRRPISPLRRPMSPLRQPLSP--RRLSPRRTEMTMNR 961
Query: 114 -VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
+SP Q+SP Q+S + SP+ Q S +SP ++ S +
Sbjct: 962 PISPLRHQISP---------RQISPMRSTASPSRRQSSSMKRPMSPLRREIPSPNRMISS 1012
Query: 173 NK 174
N+
Sbjct: 1013 NR 1014
Score = 42.7 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV------SPAYTPVSPAYTQVSP 109
+ V+P ++SP +SP SP SP P+ SP P+SP +SP
Sbjct: 882 HRVTPP-KRLSPKRPLLSPPRRLCSPPRRHFSPLRRPMSPYRQRSPIRRPISPLRRPMSP 940
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
+SP ++SP T++++ +S Q+SP Q+SP + SP+ Q SS
Sbjct: 941 LRQPLSP--RRLSPRRTEMTMN-RPISPLRHQISP--RQISPMRSTASPSRRQSSS 991
>gi|326787390|dbj|BAK08443.1| putative papain-like cysteine prorease [Plasmodium inui]
Length = 1043
Score = 45.1 bits (105), Expect = 0.021, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
V+P +Q+SP Q SP VSP PVSP +PVSP + +SP V+P V+
Sbjct: 873 VAPVGSQMSPVSPQTSP----VSPQTSPVSPQTSPVSPQTSVISPQIGAVAPQIGAVA 926
Score = 44.7 bits (104), Expect = 0.027, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 72 VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
V+P +Q+SP VSP PVSP +PVSP + VSP + +SP V+P V+
Sbjct: 873 VAPVGSQMSP----VSPQTSPVSPQTSPVSPQTSPVSPQTSVISPQIGAVAPQIGAVA 926
>gi|299740490|ref|XP_002910324.1| hypothetical protein CC1G_15232 [Coprinopsis cinerea okayama7#130]
gi|298404270|gb|EFI26830.1| hypothetical protein CC1G_15232 [Coprinopsis cinerea okayama7#130]
Length = 2257
Score = 45.1 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA ++ SP+ + SP+ ++ SP+ + SPA SPA SP+ + SPA + SP
Sbjct: 1703 SPAVSRASPSTFRESPSVSRASPSSARDSPAIARDSPAIARESPSIARESPAMPRDSPLI 1762
Query: 119 TQVSP 123
T +SP
Sbjct: 1763 TPLSP 1767
Score = 44.3 bits (103), Expect = 0.036, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 54 TVYTVSPAYTQ-VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
T+ SP+ T SPA ++ SP+ + SP+ ++ SP+ SPA SPA + SP+
Sbjct: 1690 TIAPASPSTTTWESPAVSRASPSTFRESPSVSRASPSSARDSPAIARDSPAIARESPSIA 1749
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV-SPAYTQVSPAYTQVSSAY 167
+ SPA + SP T +S + ++ SP + V SP T + S Y
Sbjct: 1750 RESPAMPRDSPLITPLSPRPPRGWSDWSAPSPGFGSVDSPTPGGYGFGSTGIGSGY 1805
Score = 40.0 bits (92), Expect = 0.67, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
+T + V SP+ + SP+ ++ SP+ + SPA + SPA SP+ SPA +
Sbjct: 1698 TTTWESPAVSRASPSTFRESPSVSRASPSSARDSPAIARDSPAIARESPSIARESPAMPR 1757
Query: 107 VSPAYTQVSP 116
SP T +SP
Sbjct: 1758 DSPLITPLSP 1767
>gi|157112848|ref|XP_001657644.1| hypothetical protein AaeL_AAEL006305 [Aedes aegypti]
gi|108877923|gb|EAT42148.1| AAEL006305-PA, partial [Aedes aegypti]
Length = 342
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/107 (16%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+P++ +P + Q +P + +P + SP + +P + +P + +P + +P
Sbjct: 200 TTPSWNWTTPEFNQTTPNWNWTTPDFNGTSPNWNWTTPEFNASTPNWNWTTPEFNASTPN 259
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ SP + ++ + + Q +P + +P + SP + +
Sbjct: 260 WNWTSP----TTPSWNWTTPDFNQTTPNWNWTTPDFNGTSPNWNSTT 302
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYI---PVSPAYTPVSPAYTQVSPAYTQVSP 116
P + +P + +P + +P Y +P + P +P++ +P + Q +P + +P
Sbjct: 164 PNWNWTTPDFNISTPNWNWTTPEYNISTPNWNWTSPTTPSWNWTTPEFNQTTPNWNWTTP 223
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
+ SP + + + + + +P + +P + SP T S +T N+
Sbjct: 224 DFNGTSPNWNWTTPEFNASTPNWNWTTPEFNASTPNWNWTSP--TTPSWNWTTPDFNQTT 281
Query: 177 PG 178
P
Sbjct: 282 PN 283
>gi|340727698|ref|XP_003402175.1| PREDICTED: hypothetical protein LOC100650346 [Bombus terrestris]
Length = 495
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y Q A TQ P TQ +PA Q +P + +PA +PA Q +PA Q +PA Q
Sbjct: 73 YMQHIQATTQQRPGITQQAPAIMQQAPEIMQQTPAIMQQAPAIMQQAPAIMQQAPAIVQQ 132
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
+P Q + A Q + A Q +PA Q P
Sbjct: 133 APEIMQRAPAIVQQAPAIMQQAPAIVQQIP 162
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A TQ P TQ +PA Q +P Q +PA + +PA +PA Q +PA Q +P Q
Sbjct: 79 ATTQQRPGITQQAPAIMQQAPEIMQQTPAIMQQAPAIMQQAPAIMQQAPAIVQQAPEIMQ 138
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSP 144
+PA Q + A Q + A Q P
Sbjct: 139 RAPAIVQQAPAIMQQAPAIVQQIP 162
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
++ +T + + +PA Q +P Q +PA Q +PA Q +PA + +PA +
Sbjct: 74 MQHIQATTQQRPGITQQAPAIMQQAPEIMQQTPAIMQQAPAIMQQAPAIMQQAPAIVQQA 133
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQ 127
P Q +PA Q +PA Q +PA Q
Sbjct: 134 PEIMQRAPAIVQQAPAIMQQAPAIVQ 159
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+P Q +PA Q +PA Q +PA Q +PA + +P +PA Q +PA Q +PA
Sbjct: 98 APEIMQQTPAIMQQAPAIMQQAPAIMQQAPAIVQQAPEIMQRAPAIVQQAPAIMQQAPAI 157
Query: 119 TQVSP 123
Q P
Sbjct: 158 VQQIP 162
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 45.1 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 68 AYTQV-SPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
AY Q+ SP+ T SP Y SP Y P SP Y+P SP
Sbjct: 1586 AYQQIASPSMTPASPGYATSSPGYTPTSPHYSPTSP 1621
Score = 42.7 bits (99), Expect = 0.10, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 75 AYTQV-SPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
AY Q+ SP+ T SP Y SP YTP SP Y+ SP
Sbjct: 1586 AYQQIASPSMTPASPGYATSSPGYTPTSPHYSPTSP 1621
Score = 40.0 bits (92), Expect = 0.72, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 61 AYTQV-SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
AY Q+ SP+ T SP Y SP YT SP Y P SP Y+P
Sbjct: 1586 AYQQIASPSMTPASPGYATSSPGYTPTSPHYSPTSPNYSP 1625
Score = 39.7 bits (91), Expect = 0.81, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 67 PAYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV-SPA 124
PA++ + + + +SPAY S P SPA +P P+ SP+Y+ SPAY Q+ SP+
Sbjct: 1536 PAFSPSAASDASGMSPAYGAWSSP-TPQSPAMSPFIPSPRGSSPSYSPSSPAYQQIASPS 1594
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSP 151
T S Y S YT SP Y+ SP
Sbjct: 1595 MTPASPGYATSSPGYTPTSPHYSPTSP 1621
Score = 37.4 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSP 88
SP+ T SP Y SP YT SP Y+ SP
Sbjct: 1592 SPSMTPASPGYATSSPGYTPTSPHYSPTSP 1621
>gi|357290983|gb|AET73583.1| hypothetical protein EMVG_00297 [Emiliania huxleyi virus PS401]
Length = 1357
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
Y SP Y+ SPAY PAY+ SPAY P SP Y P SP Y SP T++
Sbjct: 1292 YRPTSPDYSPTSPAY---DPAYSPHSPAYSPTSPVYDPASPGYRPSSPIITRL 1341
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
SP Y+ SPAY PAY+ SPAY+ SP Y P SP Y P SP T++
Sbjct: 1296 SPDYSPTSPAY---DPAYSPHSPAYSPTSPVYDPASPGYRPSSPIITRL 1341
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 32 ILIEKFKRKDLEDYLSTDEDEATVYTVSPAY----TQVSPAYTQVSPAYTQVSPAYTQVS 87
+ I FK K +D D E + + Y + P + Y SP Y+ S
Sbjct: 1245 VYISPFKDK-ADDSEDEDAAEHETHEMHETYDTHDAEEHPGFGMPEEPYRPTSPDYSPTS 1303
Query: 88 PAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
PAY PAY+P SPAY+ SP Y SP Y SP T++
Sbjct: 1304 PAY---DPAYSPHSPAYSPTSPVYDPASPGYRPSSPIITRL 1341
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 24/89 (26%)
Query: 81 PAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT 140
P + Y P SP Y+P SPAY PAY+ SPAY SP
Sbjct: 1283 PGFGMPEEPYRPTSPDYSPTSPAY---DPAYSPHSPAY---SP----------------- 1319
Query: 141 QVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
SP Y SP Y SP T++ S Q
Sbjct: 1320 -TSPVYDPASPGYRPSSPIITRLRSHAAQ 1347
>gi|345292519|gb|AEN82751.1| AT4G35800-like protein, partial [Capsella grandiflora]
gi|345292521|gb|AEN82752.1| AT4G35800-like protein, partial [Capsella grandiflora]
gi|345292523|gb|AEN82753.1| AT4G35800-like protein, partial [Capsella grandiflora]
gi|345292525|gb|AEN82754.1| AT4G35800-like protein, partial [Capsella grandiflora]
gi|345292527|gb|AEN82755.1| AT4G35800-like protein, partial [Capsella grandiflora]
gi|345292529|gb|AEN82756.1| AT4G35800-like protein, partial [Capsella grandiflora]
gi|345292531|gb|AEN82757.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292533|gb|AEN82758.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292535|gb|AEN82759.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292537|gb|AEN82760.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292539|gb|AEN82761.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292541|gb|AEN82762.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292543|gb|AEN82763.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292545|gb|AEN82764.1| AT4G35800-like protein, partial [Capsella rubella]
gi|345292547|gb|AEN82765.1| AT4G35800-like protein, partial [Neslia paniculata]
Length = 162
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
P Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 44
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 45/107 (42%), Gaps = 35/107 (32%)
Query: 81 PAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL--- 137
P Y+ SP Y P SP Y+P SP Y+ SP Y+ SP Y+ SPAY+ S +Y+ S
Sbjct: 1 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 60
Query: 138 --------------------------------AYTQVSPAYTQVSPA 152
AY+ SPAY+ SPA
Sbjct: 61 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 107
>gi|237842201|ref|XP_002370398.1| hypothetical protein TGME49_106360 [Toxoplasma gondii ME49]
gi|211968062|gb|EEB03258.1| hypothetical protein TGME49_106360 [Toxoplasma gondii ME49]
gi|221502854|gb|EEE28568.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 488
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT-QVSPAYT 119
A + P T P T P T P P P TP P T PA + V P T
Sbjct: 256 AKSDAKPGATPAKPGATPAKPGVTPAKPDATPAKPGATPAKPGATPAKPALSAPVKPGST 315
Query: 120 QVSP---AYTQVSLAYTQVSLAYTQVSPAY-TQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
V P A + L + L+ T V P T P T V P A + L +
Sbjct: 316 PVKPGVGAPAKPGLTPVKPGLS-TPVKPGLSTPAKPGLTPVKPGV----GAPAKPGLTPV 370
Query: 176 RPG 178
+PG
Sbjct: 371 KPG 373
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 44.7 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1581 SPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYSP 1621
>gi|449265715|gb|EMC76865.1| hypothetical protein A306_16023, partial [Columba livia]
Length = 210
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 47/106 (44%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP ++ T VSP Y QV +SP P++ T VSP + QV VSP
Sbjct: 73 VSPECHLINTGTTGVSPGYHQVVTTTPGMSPECHPINTGTTGVSPGHRQVVTTTPGVSPE 132
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
++ T VS QV VSP ++ T VSP + QV
Sbjct: 133 CQPINTGTTGVSPERHQVVTRTLGVSPERQPINTGTTGVSPEHHQV 178
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 47/110 (42%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T VSP ++ T VSP QV VSP P++ T VSP QV
Sbjct: 13 TALGVSPECHPINTGTTGVSPERHQVVTTALGVSPECHPINTGTTGVSPERHQVVTRTLG 72
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
VSP ++ T VS Y QV +SP ++ T VSP + QV
Sbjct: 73 VSPECHLINTGTTGVSPGYHQVVTTTPGMSPECHPINTGTTGVSPGHRQV 122
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 47/107 (43%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
VSP ++ T VSP QV + VSP P++ T VSP QV VSP
Sbjct: 17 VSPECHPINTGTTGVSPERHQVVTTALGVSPECHPINTGTTGVSPERHQVVTRTLGVSPE 76
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
++ T VS Y QV +SP ++ T VS + QV+
Sbjct: 77 CHLINTGTTGVSPGYHQVVTTTPGMSPECHPINTGTTGVSPGHRQVV 123
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 47/107 (43%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
VSP ++ T VSP Y QV +SP P++ T VSP + QV VSP
Sbjct: 73 VSPECHLINTGTTGVSPGYHQVVTTTPGMSPECHPINTGTTGVSPGHRQVVTTTPGVSPE 132
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
++ T VS QV VSP ++ T VS + QV+
Sbjct: 133 CQPINTGTTGVSPERHQVVTRTLGVSPERQPINTGTTGVSPEHHQVV 179
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 5/147 (3%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
VSP ++ T VSP QV + VSP ++ T VSP Y QV +SP
Sbjct: 45 VSPECHPINTGTTGVSPERHQVVTRTLGVSPECHLINTGTTGVSPGYHQVVTTTPGMSPE 104
Query: 125 YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN--KIRPGRES- 181
++ T VS + QV VSP ++ T VS QV+ + P R+
Sbjct: 105 CHPINTGTTGVSPGHRQVVTTTPGVSPECQPINTGTTGVSPERHQVVTRTLGVSPERQPI 164
Query: 182 NSRSSAYEAFFHEWV--WMSWYPDINP 206
N+ ++ H+ V + P+ +P
Sbjct: 165 NTGTTGVSPEHHQVVTTTLGMSPERHP 191
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 58 VSPAYTQV-------SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
VSP Y QV SP ++ T VSP + QV VSP P++ T VSP
Sbjct: 87 VSPGYHQVVTTTPGMSPECHPINTGTTGVSPGHRQVVTTTPGVSPECQPINTGTTGVSPE 146
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
QV VSP ++ T VS + QV +SP ++ T VS +V
Sbjct: 147 RHQVVTRTLGVSPERQPINTGTTGVSPEHHQVVTTTLGMSPERHPLNTGTTGVSPKCHRV 206
Query: 171 I 171
+
Sbjct: 207 V 207
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 46/110 (41%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T VSP ++ T VSP QV VSP ++ T VSP Y QV
Sbjct: 41 TALGVSPECHPINTGTTGVSPERHQVVTRTLGVSPECHLINTGTTGVSPGYHQVVTTTPG 100
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
+SP ++ T VS + QV VSP ++ T VSP QV
Sbjct: 101 MSPECHPINTGTTGVSPGHRQVVTTTPGVSPECQPINTGTTGVSPERHQV 150
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 40/94 (42%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
T VSP QV VSP P++ T VSP QV VSP ++ T VS
Sbjct: 1 TGVSPERHQVVTTALGVSPECHPINTGTTGVSPERHQVVTTALGVSPECHPINTGTTGVS 60
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
QV VSP ++ T VSP Y QV
Sbjct: 61 PERHQVVTRTLGVSPECHLINTGTTGVSPGYHQV 94
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 41/95 (43%)
Query: 77 TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
T VSP QV + VSP P++ T VSP QV VSP ++ T VS
Sbjct: 1 TGVSPERHQVVTTALGVSPECHPINTGTTGVSPERHQVVTTALGVSPECHPINTGTTGVS 60
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
QV VSP ++ T VS Y QV+
Sbjct: 61 PERHQVVTRTLGVSPECHLINTGTTGVSPGYHQVV 95
>gi|403171731|ref|XP_003330926.2| hypothetical protein PGTG_12463 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169314|gb|EFP86507.2| hypothetical protein PGTG_12463 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1069
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------PVSPAYTQVSPAYTQVSPA 117
VSPA S + SPA T S PVSPA T PVSPA+T S + VSPA
Sbjct: 609 VSPAQAAASRRPSPASPAQTVASRRASPVSPAQTVAPRRASPVSPAHTVASRRASPVSPA 668
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
T VS + VS A T S + VSPA T S + VSPA T
Sbjct: 669 QTVVSRRASPVSPAQTVASRRVSPVSPARTVASRHASPVSPAQT 712
>gi|345486591|ref|XP_001605254.2| PREDICTED: protein LMBR1L-like [Nasonia vitripennis]
Length = 529
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVS 59
SY LI +F+ + EDYL TDEDEATVY +S
Sbjct: 38 SYALISRFRWRGGEDYLDTDEDEATVYRIS 67
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 24/118 (20%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY----------- 104
+ SP ++ SP + SPAY+ SP Y Q P SP+Y+P SP +
Sbjct: 1600 FMSSPGFSPASPVFAPTSPAYSPTSPGYQQS-----PTSPSYSPTSPGFSPTSPSYSPTS 1654
Query: 105 ---TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ-VSPAYTQVSPAYTQVSP 158
+ SPA++ SP+Y+ SPA T L+ T SP YT SP ++ SP
Sbjct: 1655 PSFSPASPAFSPTSPSYSPTSPALG----GSTGRHLSPTSPTSPKYTPTSPGWSPTSP 1708
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 56 YTVSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP + SP Y+ SP + SP + SP + P SP + P SPAY+ SP Y Q
Sbjct: 1571 FNTSPTSPRYSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPVFAPTSPAYSPTSPGYQQ 1629
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 1630 -SP----TSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1677
>gi|341902885|gb|EGT58820.1| hypothetical protein CAEBREN_01460 [Caenorhabditis brenneri]
Length = 368
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Q SP Q SP Q SP +TQ +P + S P T++SP + +
Sbjct: 114 SPILAQNSPDLAQNSPDLAQNSPIFTQNTPNFAQNSSNLAQNCPDPTELSPKNEREIAEF 173
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ Q SL Q S + S ++ ++SP + SP Q S ++Q
Sbjct: 174 SPKPTERAQNSLDSAQNSPNLARKSSSFVRISPNLARKSPDLAQSSPNFSQ 224
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP +TQ +P + Q S Q P T++SP ++P Q S Q SP
Sbjct: 135 SPIFTQNTPNFAQNSSNLAQNCPDPTELSPKNEREIAEFSPKPTERAQNSLDSAQNSPNL 194
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ S ++ ++S + S Q SP ++Q +P + P
Sbjct: 195 ARKSSSFVRISPNLARKSPDLAQSSPNFSQNTPDLAENPP 234
>gi|331215609|ref|XP_003320484.1| hypothetical protein PGTG_02506 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 665
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 59 SPAYTQVSPAYTQVSPA--YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
SP +Q+ PA YT+++ +T+++ + ++ YT ++ +T+ + YT+ +
Sbjct: 275 SPVICNTPHPLSQLEPATEYTELATEHTELATEHTELATDYTELAIDHTEPATEYTEPAT 334
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
YT++ +T+ + YT+++ Y + + YT+++ Y + YT+ + A T+ +++
Sbjct: 335 DYTELVKDHTEPATDYTELAKEYAESATDYTKLAKDYMEPETNYTEPTIADTEKLID 391
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 53 ATVYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
AT YT ++ +T+++ +T+++ YT+++ +T+ + Y + YT + +T+ + Y
Sbjct: 291 ATEYTELATEHTELATEHTELATDYTELAIDHTEPATEYTEPATDYTELVKDHTEPATDY 350
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
T+++ Y + + YT+++ Y + YT+ + A T+
Sbjct: 351 TELAKEYAESATDYTKLAKDYMEPETNYTEPTIADTE 387
>gi|359319590|ref|XP_003639122.1| PREDICTED: LOW QUALITY PROTEIN: protein FAM65A [Canis lupus
familiaris]
Length = 1238
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 32/142 (22%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPA----------YTQVSPAYIPVSPAYTPVSPAYTQV 107
V P+++ SP + PA+T PA T S A +P P +T Y +
Sbjct: 526 VDPSHSATSPTLSTTGPAHTSTDPAPSAHLDLVHKITDSSTADLP-DPTHTTTGSTYNAI 584
Query: 108 SPAYTQVSPAYTQVSPAY---------------------TQVSLAYTQVSLAYTQVSPAY 146
SP+Y+ SP +T + T S +T +S +T SP +
Sbjct: 585 SPSYSAPSPIHTTTGSTHKPLVSPLTTTGPTPNTTGPVQTTTSPVHTTISPTHTTASPTH 644
Query: 147 TQVSPAYTQVSPAYTQVSSAYT 168
T SPA+T SP + S +T
Sbjct: 645 TTASPAHTTTSPTHKARMSTHT 666
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 30/135 (22%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV----------------SPAYTQV 107
Q P V P+++ SP + PA+ PA + P +T
Sbjct: 518 QSGPVPPAVDPSHSATSPTLSTTGPAHTSTDPAPSAHLDLVHKITDSSTADLPDPTHTTT 577
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQV--------------SLAYTQVSPAYTQVSPAY 153
Y +SP+Y+ SP +T + + T SP +T +SP +
Sbjct: 578 GSTYNAISPSYSAPSPIHTTTGSTHKPLVSPLTTTGPTPNTTGPVQTTTSPVHTTISPTH 637
Query: 154 TQVSPAYTQVSSAYT 168
T SP +T S A+T
Sbjct: 638 TTASPTHTTASPAHT 652
>gi|157124767|ref|XP_001660514.1| lipocalin-1 interacting membrane receptor (limr) [Aedes aegypti]
gi|108873885|gb|EAT38110.1| AAEL009957-PA [Aedes aegypti]
Length = 515
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
S+ LI +F+R+D ED STD+DE TVY +S S A + +S A +V
Sbjct: 36 SFALIGRFRRRDREDLFSTDDDEITVYRISLWLCTFSLAVAVGAALLLPISIASNEVLIL 95
Query: 90 Y 90
Y
Sbjct: 96 Y 96
>gi|449270505|gb|EMC81172.1| DNA-directed RNA polymerase II subunit RPB1, partial [Columba
livia]
Length = 331
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP T V P + V P + V P + V P +IPV P + PV P + V P + V P +
Sbjct: 109 SPRQTPVQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHVPVQPQH 168
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAY---TQVSPAYTQVSPAYTQVSSAYTQ 169
V P Y + A +Q LA Q +PA T V P+ ++P+ Q+ S+ Q
Sbjct: 169 VPVQPQY---APAQSQHILAQPQYTPAQSISTPVHPSSPWLNPSTPQLKSSSPQ 219
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP T V P +IPV P + PV P + V P + V P + V P + V + V +
Sbjct: 109 SPRQTPVQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHVPVQPQH 168
Query: 140 TQVSPAYTQVSPAYTQ---VSPAYTQVSSAYTQVI-----LNKIRPGRESNS 183
V P Y +PA +Q P YT S T V LN P +S+S
Sbjct: 169 VPVQPQY---APAQSQHILAQPQYTPAQSISTPVHPSSPWLNPSTPQLKSSS 217
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 90 YIPVSPAYTPV----SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
+ PV P +TPV SP +Q PA +Q +P +Q +P Q + A +Q LA Q +PA
Sbjct: 241 HTPVQPQFTPVQSQYSPDQSQYDPASSQFTPVQSQFTPVQPQYAPAQSQHILAQLQYTPA 300
Query: 146 YTQVSPAYTQVSPAYTQVSSAYTQ 169
+Q PA +Q PA +Q S Q
Sbjct: 301 SSQQIPAQSQFIPAQSQFSPVQPQ 324
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV---SPAYTPVSPAYTQVSPAYTQV 114
V P++ P+ P+ V P+ +V P+ IP+ SP TPV P + V P + V
Sbjct: 70 VHPSFLSAEPSSNPAHPSSIPVHPSSIEVLPSSIPIRLSSPRQTPVQPQHIPVQPQHIPV 129
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNK 174
P + V P + V + V + V P + V P + V P Y + A +Q IL +
Sbjct: 130 QPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHVPVQPQHVPVQPQY---APAQSQHILAQ 186
Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V P + V P + V P + V P + V P +IPV P + PV P + V P Y +PA
Sbjct: 122 VQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHIPVQPQHVPVQPQHVPVQPQY---APA 178
Query: 118 YTQ---VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+Q P YT T V + ++P+ Q+ + Q SP+ Q
Sbjct: 179 QSQHILAQPQYTPAQSISTPVHPSSPWLNPSTPQLKSSSPQFSPSRPQ 226
>gi|443688253|gb|ELT91000.1| hypothetical protein CAPTEDRAFT_196991 [Capitella teleta]
Length = 2060
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 35/53 (66%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
Q SPA +VSPA +VSPA +VSPA VSPA VSPA +VSP +VSP
Sbjct: 1820 QPSPAPMRVSPAPQRVSPAPQRVSPAPQRVSPAPQRVSPAPQRVSPPPKRVSP 1872
Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 34/51 (66%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
SPA +VSPA +VSPA +VSPA +VSPA VSPA VSP +VSP
Sbjct: 1822 SPAPMRVSPAPQRVSPAPQRVSPAPQRVSPAPQRVSPAPQRVSPPPKRVSP 1872
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 87 SPAYIPVSPAYTP-VSPA-YTQVSPA------YTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
P++ P +PA P VSPA QV+P Q SPA +VSPA +VS A +VS A
Sbjct: 1786 DPSFNPFAPATRPQVSPAPIKQVTPTPPRQIIQKQPSPAPMRVSPAPQRVSPAPQRVSPA 1845
Query: 139 YTQVSPAYTQVSPAYTQVSPAYTQVS 164
+VSPA +VSPA +VSP +VS
Sbjct: 1846 PQRVSPAPQRVSPAPQRVSPPPKRVS 1871
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 73 SPAYTQVSPAYT-QVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
P++ +PA QVSPA I P Q SPA +VSPA +VSPA +VS A
Sbjct: 1786 DPSFNPFAPATRPQVSPAPIKQVTPTPPRQIIQKQPSPAPMRVSPAPQRVSPAPQRVSPA 1845
Query: 132 YTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+VS A +VSPA +VSP +VSP
Sbjct: 1846 PQRVSPAPQRVSPAPQRVSPPPKRVSP 1872
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 66 SPAYTQVSPAYT-QVSPA-YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
P++ +PA QVSPA QV+P P SPA +VSPA +VSPA +VSP
Sbjct: 1786 DPSFNPFAPATRPQVSPAPIKQVTPTP-PRQIIQKQPSPAPMRVSPAPQRVSPAPQRVSP 1844
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
A +VS A +VS A +VSP +VSP
Sbjct: 1845 APQRVSPAPQRVSPAPQRVSPPPKRVSP 1872
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
VSPA +VSPA +VSPA +VSPA +VSPA VSP VSP
Sbjct: 1828 VSPAPQRVSPAPQRVSPAPQRVSPAPQRVSPAPQRVSPPPKRVSP 1872
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 43.9 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP+Y+ SPAY SP+ T SP Y+ SP Y P SP Y+P
Sbjct: 1584 SPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYSP 1624
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP-AYTQVSPAYTQ--------VSP 116
SP+Y+ SP Y+ SP SP+Y P SP ++P SP AY+ SP + + SP
Sbjct: 1663 SPSYSPASPNYSPASPNLHATSPSYSPASPTWSPTSPEAYSPTSPTFQRSPGQAASPTSP 1722
Query: 117 AYTQVSPAYT 126
+Y+ SP ++
Sbjct: 1723 SYSPTSPTFS 1732
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 54 TVYTVSPAYTQVSPAYTQVSP-AYTQVSPAYTQVSP--AYIPVSPAYTPVSPAYTQVSPA 110
++ SP+Y+ SP ++ SP AY+ SP + Q SP A P SP+Y+P SP ++ +P
Sbjct: 1679 NLHATSPSYSPASPTWSPTSPEAYSPTSPTF-QRSPGQAASPTSPSYSPTSPTFSPRTPG 1737
Query: 111 YTQVSPA 117
PA
Sbjct: 1738 RGPPGPA 1744
>gi|186685934|ref|YP_001869130.1| hypothetical protein Npun_F5891 [Nostoc punctiforme PCC 73102]
gi|186468386|gb|ACC84187.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length = 83
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P +++ P +V P +V P ++V+P Y+ V P + + P + V P ++V+P
Sbjct: 2 LRPLNSELRPLNLEVEPFCLKVEPLNSEVAPFYLNVEPLNSEIEPFCSNVKPLNSEVAPF 61
Query: 118 YTQVSPAYTQVSLAYTQVSL 137
V P ++++ V L
Sbjct: 62 CLNVEPLNSEIAPFCLNVEL 81
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%)
Query: 71 QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
+ P +++ P +V P + V P + V+P Y V P +++ P + V P ++V+
Sbjct: 1 MLRPLNSELRPLNLEVEPFCLKVEPLNSEVAPFYLNVEPLNSEIEPFCSNVKPLNSEVAP 60
Query: 131 AYTQVSLAYTQVSPAYTQVS 150
V ++++P V
Sbjct: 61 FCLNVEPLNSEIAPFCLNVE 80
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%)
Query: 78 QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSL 137
+ P +++ P + V P V P ++V+P Y V P +++ P + V ++V+
Sbjct: 1 MLRPLNSELRPLNLEVEPFCLKVEPLNSEVAPFYLNVEPLNSEIEPFCSNVKPLNSEVAP 60
Query: 138 AYTQVSPAYTQVSPAYTQVS 157
V P ++++P V
Sbjct: 61 FCLNVEPLNSEIAPFCLNVE 80
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 43.9 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 66/103 (64%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y+ SP+Y+ SP Y+ SP Y+ SP+Y P SP Y+P SP+YT SP+Y+ SP+Y+
Sbjct: 1791 YSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSPTSPSYTPASPSYSPASPSYSPS 1850
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP+Y+ S YT S Y+ SP Y+ SP Y+ +P+YT +S
Sbjct: 1851 SPSYSPSSPRYTPTSPQYSPTSPKYSPASPNYSPTTPSYTPMS 1893
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 21/119 (17%)
Query: 76 YTQVSPAYTQVSPAYIPVSP---------------------AYTPVSPAYTQVSPAYTQV 114
Y+ SP+Y+ SP Y P SP +YTP SP+Y+ SP+Y+
Sbjct: 1791 YSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSPTSPSYTPASPSYSPASPSYSPS 1850
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
SP+Y+ SP YT S Y+ S Y+ SP Y+ +P+YT +S + + Q++L+
Sbjct: 1851 SPSYSPSSPRYTPTSPQYSPTSPKYSPASPNYSPTTPSYTPMSGHIVPLLHSIVQLLLD 1909
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 28/137 (20%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYT---QVSPA-----------YIPVSPAYTPVSPAY 104
SP ++ +SP+Y SP Y SP T SP Y P S +P+SP Y
Sbjct: 1601 SPGFSPISPSYLPSSPDYAATSPMVTPSAGYSPKSLSHSPMSLVYYNPSSSGCSPISPNY 1660
Query: 105 TQVSPAYTQ--------------VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+ SP+Y+ +SP+ SP+Y S +Y+ S +Y SP Y+ S
Sbjct: 1661 SPRSPSYSPLSPAYSPSSPSYNPLSPSCNLTSPSYDPASPSYSPTSPSYNPTSPNYSPTS 1720
Query: 151 PAYTQVSPAYTQVSSAY 167
P Y+ SP Y S Y
Sbjct: 1721 PIYSPTSPGYEPTSPRY 1737
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
+P+ + SP +SP Y+ SP+Y P+SPAY+P SP+Y +SP+ SP+Y SP+Y
Sbjct: 1647 NPSSSGCSP----ISPNYSPRSPSYSPLSPAYSPSSPSYNPLSPSCNLTSPSYDPASPSY 1702
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+ S +Y S Y+ SP Y+ SP Y SP Y S Y
Sbjct: 1703 SPTSPSYNPTSPNYSPTSPIYSPTSPGYEPTSPRYVPTSPGY 1744
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 43.5 bits (101), Expect = 0.055, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
YT SP Y+ SP Y+ SP Y+ SP Y SPA +P
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSLTSPAISP 1890
Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 77 TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
+ YT SP Y P SP Y+P SP Y+ SP Y+ SPA +SP
Sbjct: 1851 PE----YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSLTSPA---ISPG 1891
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
YT SP Y SP P Y P SP Y+P SP Y+ SPA +SP
Sbjct: 1853 YTPTSPKY---SPTS----PKYSPTSPKYSPTSPTYSLTSPA---ISPG 1891
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
YT SP Y P SP Y+P SP + SP SP Y+ SPA +
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSP---KYSP----TSPTYSLTSPAIS 1889
>gi|365131208|ref|ZP_09341775.1| hypothetical protein HMPREF1032_02854 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363618874|gb|EHL70211.1| hypothetical protein HMPREF1032_02854 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 1227
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
S A T V+PA + A Q++ A + ++ A TQ+ A Q++ A Q++
Sbjct: 504 SAAQTAVAPAKAALDTANAQLASAQAAYDTSSAALAAARTQLDTAKAQITEAEPQIAEGE 563
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYT--QVSPAYTQVSSAYTQVILNKIR 176
Q++ Q+S A QV A Q++ T ++P Q+ Q L+ +
Sbjct: 564 KQLADGQQQLSAAKKQVLEAEKQIASGETALNLAPGLAQLQLELAQSKLDSAK 616
>gi|299469857|emb|CBN76711.1| hypothetical protein Esi_0000_0510 [Ectocarpus siliculosus]
Length = 398
Score = 43.5 bits (101), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
+V PA TQV PA TQV PA TQV PA PV P P + A +V
Sbjct: 19 RVVPARTQVVPARTQVVPARTQVVPARTPVVPLPRPTAGAGQRV 62
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 25/43 (58%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV 100
V PA TQV PA TQV PA TQV PA T V P P + A V
Sbjct: 20 VVPARTQVVPARTQVVPARTQVVPARTPVVPLPRPTAGAGQRV 62
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 20/29 (68%)
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
V PA TQV PA TQV PA TQV PA T V
Sbjct: 20 VVPARTQVVPARTQVVPARTQVVPARTPV 48
Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
+ V PA T V PA TQV PA TQV PA T V P
Sbjct: 18 VRVVPARTQVVPARTQVVPARTQVVPARTPVVP 50
>gi|13517499|gb|AAK28824.1|AF312033_9 ZAN [Mus musculus]
gi|15722002|gb|AAL04416.1| zonadhesin [Mus musculus]
Length = 5374
Score = 43.5 bits (101), Expect = 0.060, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 58 VSPAYTQVSPAYT------QVSP----AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
VSP T + P T VSP + T+V+P T V+ AY+ + A SP T V
Sbjct: 609 VSPKETSIPPEVTIPTEVITVSPEEIISPTEVTPVPTDVTAAYVEATNA----SPEETSV 664
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P T ++ T VSP T V T+V + + + T + YT+V T+V+ +
Sbjct: 665 PPEVTILTEV-TTVSPEETTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVH 720
Query: 168 TQV 170
T+V
Sbjct: 721 TEV 723
Score = 40.4 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 42 LEDYLSTDEDEATVYTVSPAYTQVSPAY-TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV 100
L + + +E TV T P + A+ T + YT+V T+V+ + V T V
Sbjct: 671 LTEVTTVSPEETTVPTEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVHTEV----TNV 726
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP------AYT 154
SP T V P +S T VSP T + VS T VSP T V P T
Sbjct: 727 SPEETSV-PTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTEIT 785
Query: 155 QVSPAYT 161
VSP T
Sbjct: 786 TVSPEET 792
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAY---TQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
V TVSP +SP T+V+P T V+ AY T SP V P T ++ T VSP
Sbjct: 626 VITVSPEEI-ISP--TEVTPVPTDVTAAYVEATNASPEETSVPPEVTILTEV-TTVSPEE 681
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAYT 168
T V T+V + + T + YT+V T+V+ +T+ VSP T V + T
Sbjct: 682 TTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEET 738
Score = 37.7 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 43 EDYLSTDEDEAT-VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVS 101
E + T+E +T V TVSP T + VS T VSP T V P ++ T VS
Sbjct: 730 ETSVPTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILT-EITTVS 788
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P T V P P T+V +V+ T + T+V T+++ +T+V+ +
Sbjct: 789 PEET-VFPTEGTTLP--TEVLTVPIEVTTFPTGETTVPTEVPTVSTEMTGVHTEVTTVFP 845
Query: 162 QVSSAYTQV 170
+ +S T+V
Sbjct: 846 EETSIPTEV 854
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 56 YTVSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP + SP Y+ SP + SP + SP + P SPA+ P SPAY+ SP+Y Q
Sbjct: 1571 FNTSPTSPRYSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPAFAPTSPAYSPTSPSYQQ 1629
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 1630 -SP----TSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1677
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 43/146 (29%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPA----------------- 96
+ SP ++ SPA+ SPAY+ SP+Y Q SP+Y P SP
Sbjct: 1600 FMSSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSP 1659
Query: 97 -----------YTPVSPAY-----------TQVSPAYTQVSPAYTQVSPA-YTQVSLAYT 133
Y+P SPA + SP YT SP ++ SP Y+ S ++
Sbjct: 1660 ASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS 1719
Query: 134 QVSLA-YTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ SP + +SP
Sbjct: 1720 GSPTSPGGPTSPGYSPTSPTFNPISP 1745
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 43.5 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 83 YTQVSPAYIPVSPA------YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
Y SP+Y P + + Y+P SP+ VSP Y+ SP Y+ + +Y+ SL +T +
Sbjct: 1740 YAASSPSYTPSATSGTSNYKYSPTSPSLA-VSPTYSPTSPMYSPSNASYSPSSLQHTPNA 1798
Query: 137 --LAYTQVSPA---------YTQVSPAYTQVSPAYT 161
Y Q ++ SP Y+ SP Y+
Sbjct: 1799 GGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYS 1834
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 67 PAYTQVSPAYT-QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
P+ + +SP Y SP + +SP+ P + Y+P SP Y+ A Q +P Y+ +SP Y
Sbjct: 1575 PSPSSMSPNYNYPSSPQFGSLSPSMTPTN--YSPTSPQYS----ATQQNTPKYSSMSPNY 1628
>gi|387597095|gb|EIJ94715.1| hypothetical protein NEPG_00238 [Nematocida parisii ERTm1]
Length = 294
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%)
Query: 35 EKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVS 94
+K K KD E + DE PA + SP + PA + P + P
Sbjct: 160 DKEKPKDDEAPPAEDEAPPKDDEAPPAEDEASPKDDEAPPAENEAPPKDDEAPPKDDEAP 219
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYT 119
PA SPA ++ SPA ++ SPA +
Sbjct: 220 PAEDEASPAESEASPAESEASPAES 244
Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 39 RKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT 98
KD ED +DEA PA + P + PA + SP PA
Sbjct: 155 EKDPEDKEKPKDDEAP------------PAEDEAPPKDDEAPPAEDEASPKDDEAPPAEN 202
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT 140
P + P + PA + SPA ++ S A ++ S A +
Sbjct: 203 EAPPKDDEAPPKDDEAPPAEDEASPAESEASPAESEASPAES 244
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 34/85 (40%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
+ P + PA + P PA SP + PA + P + P +
Sbjct: 160 DKEKPKDDEAPPAEDEAPPKDDEAPPAEDEASPKDDEAPPAENEAPPKDDEAPPKDDEAP 219
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYT 154
A + S A ++ SPA ++ SPA +
Sbjct: 220 PAEDEASPAESEASPAESEASPAES 244
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 56 YTVSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP + SP Y+ SP + SP + SP + P SPA+ P SPAY+ SP+Y Q
Sbjct: 1571 FNTSPTSPRYSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPAFAPTSPAYSPTSPSYQQ 1629
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 1630 -SP----TSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1677
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 43/146 (29%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPA----------------- 96
+ SP ++ SPA+ SPAY+ SP+Y Q SP+Y P SP
Sbjct: 1600 FMSSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSP 1659
Query: 97 -----------YTPVSPAY-----------TQVSPAYTQVSPAYTQVSPA-YTQVSLAYT 133
Y+P SPA + SP YT SP ++ SP Y+ S ++
Sbjct: 1660 ASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS 1719
Query: 134 QVSLA-YTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ SP + +SP
Sbjct: 1720 GSPTSPGGPTSPGYSPTSPTFNPISP 1745
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 55 VYTVSPAYTQVSPAYTQVSPA-------YTQVSPA--YTQVSPAYIPVSPAYTPVSP--- 102
V SPA SP+ SPA Y+ SPA + SP Y P SP Y+P SP
Sbjct: 1617 VRPTSPASPNYSPSSPNYSPASPSSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLH 1676
Query: 103 AYTQVSPAYTQVSPAYTQVSP-AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
A SP+Y+ SP ++ SP AY+ S + SP+Y+ SPA++ +P
Sbjct: 1677 AGGTTSPSYSPASPTWSPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSPAFSPRTPGPG 1736
Query: 162 QVSSAYT 168
+ Y+
Sbjct: 1737 SSGNQYS 1743
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 57 TVSPAYTQVSPAYTQVSP-AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
T SP+Y+ SP ++ SP AY+ SP P SP+Y+P SPA++ +P
Sbjct: 1680 TTSPSYSPASPTWSPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSPAFSPRTPGPGSSG 1739
Query: 116 PAYTQVSPA 124
Y+ SP+
Sbjct: 1740 NQYSPNSPS 1748
>gi|357390812|ref|YP_004905653.1| hypothetical protein KSE_39010 [Kitasatospora setae KM-6054]
gi|311897289|dbj|BAJ29697.1| hypothetical protein KSE_39010 [Kitasatospora setae KM-6054]
Length = 243
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y Q +PAY Q S Y PAY Q PA PA +P Y Q P + Q P Y Q
Sbjct: 37 GYAQPAPAYGQPS-GYGTPPPAYGQQPPASGYAQPA---PAPGYEQ-QPGWGQQPPGYGQ 91
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
PAY Q Y Q Q+ PA+ Q P
Sbjct: 92 QPPAYGQQPAPYGQPPTGDGQL-PAWGQAPP 121
>gi|390950236|ref|YP_006413995.1| hypothetical protein Thivi_1902 [Thiocystis violascens DSM 198]
gi|390426805|gb|AFL73870.1| hypothetical protein Thivi_1902 [Thiocystis violascens DSM 198]
Length = 455
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV-------SPAYTPVS----PAYTQVS 108
PA V P T+ +PA V P + PA V +PA PV+ PA V
Sbjct: 251 PAVEAVEPVATEAAPATETVEPVAAEAMPAVEAVEPVATEAAPATEPVAAEAIPAVETVE 310
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
P T+ +PA V P T+ + A V T+ +PA V P + +PA V T
Sbjct: 311 PVATEAAPAVEAVEPVATEAAPAVEAVEPVVTEAAPAVEAVEPVSAEAAPAVETVEPVAT 370
Query: 169 QVI 171
+ +
Sbjct: 371 EAV 373
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA V P T+ +PA V P T+ +PA V P T +PA V P + +PA
Sbjct: 304 PAVETVEPVATEAAPAVEAVEPVATEAAPAVEAVEPVVTEAAPAVEAVEPVSAEAAPAVE 363
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ-VSPAYTQ 162
V P T+ A V + PA P T+ V PA +
Sbjct: 364 TVEPVATEAVPATETVESVSAEAPPAVETAEPVATEAVEPAAIE 407
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 55 VYTVSPAYTQVSPAYTQVS----PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
V V P T+ +PA V+ PA V P T+ +PA V P T +PA V P
Sbjct: 281 VEAVEPVATEAAPATEPVAAEAIPAVETVEPVATEAAPAVEAVEPVATEAAPAVEAVEPV 340
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
T+ +PA V P + + A V T+ PA V + PA T+
Sbjct: 341 VTEAAPAVEAVEPVSAEAAPAVETVEPVATEAVPATETVESVSAEAPPAVETAEPVATEA 400
Query: 171 I 171
+
Sbjct: 401 V 401
>gi|294930382|ref|XP_002779546.1| calcium-binding tyrosine phosphorylation-regulated protein,
putative [Perkinsus marinus ATCC 50983]
gi|239888865|gb|EER11341.1| calcium-binding tyrosine phosphorylation-regulated protein,
putative [Perkinsus marinus ATCC 50983]
Length = 597
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 57/133 (42%), Gaps = 4/133 (3%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T +P T P T P T +P T P P T SP P T +P
Sbjct: 337 TEAPVETTEVPVDTTEVPVDTTEAPVDTTEVPVETTEVPGETTESPVEKTEGPVDTTEAP 396
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT----QVIL 172
A T +PA T + A T + A T +PA T +PA T +PA T + A T I
Sbjct: 397 AETTEAPAETTEAPAETTEAPAETTEAPAETTEAPAETTEAPAETTEAPADTTEVCMKIC 456
Query: 173 NKIRPGRESNSRS 185
N+ P R+S+S S
Sbjct: 457 NEFGPCRDSDSGS 469
>gi|258647403|ref|ZP_05734872.1| gas vesicle protein GvpC repeat-containing domain protein
[Prevotella tannerae ATCC 51259]
gi|260852771|gb|EEX72640.1| gas vesicle protein GvpC repeat-containing domain protein
[Prevotella tannerae ATCC 51259]
Length = 408
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 24/74 (32%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P Y+ Y P Y P Y P Y P Y P Y P Y P Y+
Sbjct: 35 PQYSNGQTQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNSQPQYNNGQPQYS 94
Query: 120 QVSPAYTQVSLAYT 133
P Y V +Y
Sbjct: 95 NGQPQYNSVQSSYN 108
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 25/83 (30%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y P Y+ Y P Y P Y P Y P Y P Y P Y
Sbjct: 30 YNNGQPQYSNGQTQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNSQPQYNNG 89
Query: 122 SPAYTQVSLAYTQVSLAYTQVSP 144
P Y+ Y V +Y P
Sbjct: 90 QPQYSNGQPQYNSVQSSYNNGQP 112
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 21/64 (32%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P Y P Y P Y P Y P Y P Y P Y+ P Y V +Y
Sbjct: 49 PQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNSQPQYNNGQPQYSNGQPQYNSVQSSYN 108
Query: 120 QVSP 123
P
Sbjct: 109 NGQP 112
Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 25/86 (29%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV 142
Y Y P Y+ Y P Y P Y P Y Y Y
Sbjct: 23 YNNGQRQYNNGQPQYSNGQTQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNS 82
Query: 143 SPAYTQVSPAYTQVSPAYTQVSSAYT 168
P Y P Y+ P Y V S+Y
Sbjct: 83 QPQYNNGQPQYSNGQPQYNSVQSSYN 108
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 25/90 (27%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y Y P Y+ Y P Y P Y P Y P Y P Y
Sbjct: 23 YNNGQRQYNNGQPQYSNGQTQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNGQPQYNNS 82
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P Y Y+ Y V +Y P
Sbjct: 83 QPQYNNGQPQYSNGQPQYNSVQSSYNNGQP 112
>gi|350412378|ref|XP_003489625.1| PREDICTED: hypothetical protein LOC100747094, partial [Bombus
impatiens]
Length = 389
Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
PA T+ PA T+ PA T+ PA T+ A T+ A T+ PA T+ P + P
Sbjct: 2 PAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTETQPGIPEAQPPTK 61
Query: 162 QVSSAYTQVILNKIRPGRE 180
TQ + RPG E
Sbjct: 62 PAIETSTQEA--EERPGTE 78
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
PA T+ PA T+ PA T+ PA T+ PA PA T PA T+ P + P
Sbjct: 2 PAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTETQPGIPEAQP 58
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
PA T+ PA T+ PA T+ PA PA T PA T+ PA T+ P + P
Sbjct: 2 PAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTETQPGIPEAQP 58
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 95 PAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
PA T PA T+ PA T+ PA T+ PA T+ A T+ A T+ P + P
Sbjct: 2 PAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTETQPGIPEAQP 58
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 81 PAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
PA T+ PA PA T PA T+ PA T+ PA T+ PA T+
Sbjct: 2 PAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTE 48
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
V PA T+ PA T+ PA T+ PA T+ PA PA T P + P
Sbjct: 4 VTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTEAQPAVTETQPGIPEAQP 58
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 43.1 bits (100), Expect = 0.085, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY 104
SPA SP + SP ++ SP++ P SPAY+P SP Y
Sbjct: 1570 SPAIGITSPRFMS-SPGFSPTSPSFAPTSPAYSPTSPMY 1607
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
SPA SP + SP + P SP++ P SPAY+ SP Y
Sbjct: 1570 SPAIGITSPRFMS-SPGFSPTSPSFAPTSPAYSPTSPMY 1607
Score = 40.4 bits (93), Expect = 0.52, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SPA SP ++ SP ++P SP++ SPAY+ SP Y
Sbjct: 1570 SPAIGITSPRFMS-SPGFSPTSPSFAPTSPAYSPTSPMY 1607
>gi|331234801|ref|XP_003330059.1| hypothetical protein PGTG_10969 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 439
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPA--YTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP A +Q+ P + A YT++++ YT++++ YT+++ YT+++ YT+++
Sbjct: 334 SPVICNTPHALSQMEPLKDNMELAMDYTELAMDYTELAMDYTELATDYTKLATDYTELAM 393
Query: 159 AYTQVSSAYTQVILN 173
YT+ ++ +T+ ++N
Sbjct: 394 DYTEPAAEFTEPVMN 408
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPA--YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP A +Q+ P + A YT+++ YT++++ YT+++ YT+++ YT+++
Sbjct: 334 SPVICNTPHALSQMEPLKDNMELAMDYTELAMDYTELAMDYTELATDYTKLATDYTELAM 393
Query: 152 AYTQVSPAYTQ 162
YT+ + +T+
Sbjct: 394 DYTEPAAEFTE 404
>gi|156354104|ref|XP_001623242.1| predicted protein [Nematostella vectensis]
gi|156209921|gb|EDO31142.1| predicted protein [Nematostella vectensis]
Length = 109
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/104 (12%), Positives = 51/104 (49%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+ + P+ ++P+ + P+ + P+ ++P+ ++P+ ++P+ + P+
Sbjct: 2 PSSCMIHPSSCMINPSSCMIHPSSCMIHPSSCMINPSSCMINPSSCMINPSSCMIHPSSC 61
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
++P+ + + + + ++P+ ++P+ ++P+ +
Sbjct: 62 MINPSSCMIHPSSCMIHPSSCMINPSSCMINPSSCMINPSSCMI 105
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/101 (12%), Positives = 50/101 (49%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+ P+ ++P+ + P+ + P+ ++P+ ++P+ ++P+ + P+ ++P+
Sbjct: 7 IHPSSCMINPSSCMIHPSSCMIHPSSCMINPSSCMINPSSCMINPSSCMIHPSSCMINPS 66
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ P+ + + ++ + ++P+ ++P+ + P
Sbjct: 67 SCMIHPSSCMIHPSSCMINPSSCMINPSSCMINPSSCMIHP 107
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/104 (11%), Positives = 50/104 (48%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
P+ + P+ ++P+ + P+ + P+ ++P+ ++P+ ++P+ + P+
Sbjct: 2 PSSCMIHPSSCMINPSSCMIHPSSCMIHPSSCMINPSSCMINPSSCMINPSSCMIHPSSC 61
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
++ + + + + P+ ++P+ ++P+ ++ + +
Sbjct: 62 MINPSSCMIHPSSCMIHPSSCMINPSSCMINPSSCMINPSSCMI 105
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV--SPA----------------Y 97
Y+ S +Y SP Y+ +P+Y SP Y+ SP Y P+ SPA
Sbjct: 1587 YSASNSYLAGSPEYSPTNPSYQLTSPKYSPSSPNYNPLAMSPAYSPTSPSYSPSSPDYDP 1646
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
TPV ++ Y+ + Y+ SPAY+ S Y+ SL SP Y+ SP Y+ S
Sbjct: 1647 TPVGADGSKKPMRYSPTNANYSPSSPAYSPASPKYSP-SLG----SPKYSPGSPGYSPSS 1701
Query: 158 PAYTQVS 164
P ++ S
Sbjct: 1702 PGFSMTS 1708
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV--SPA--YTQVSPAYTQVSPAYTQV 121
S +Y SP Y+ +P+Y SP Y P SP Y P+ SPA T S + + T V
Sbjct: 1590 SNSYLAGSPEYSPTNPSYQLTSPKYSPSSPNYNPLAMSPAYSPTSPSYSPSSPDYDPTPV 1649
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY--TQVSPAYTQVSSAYT 168
++ + Y+ + Y+ SPAY+ SP Y + SP Y+ S Y+
Sbjct: 1650 GADGSKKPMRYSPTNANYSPSSPAYSPASPKYSPSLGSPKYSPGSPGYS 1698
>gi|156314080|ref|XP_001617874.1| hypothetical protein NEMVEDRAFT_v1g156493 [Nematostella vectensis]
gi|156196257|gb|EDO25774.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
SP +T + P +S +T + P +SP +T + +S YT + P +SP +
Sbjct: 1 SPRHTNIVPLTNTLSTRHTNILPLTNTLSPRHTNIVPLTNTLSTRYTNILPLTNTLSPRH 60
Query: 154 TQVSPAYTQVSSAYTQVI 171
T + P +S+ +T ++
Sbjct: 61 TNIVPLTNTISTRHTNIV 78
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP +T + P +S +T + P +SP + + P +S YT + P +SP +
Sbjct: 1 SPRHTNIVPLTNTLSTRHTNILPLTNTLSPRHTNIVPLTNTLSTRYTNILPLTNTLSPRH 60
Query: 119 TQVSPAYTQVSLAYTQV 135
T + P +S +T +
Sbjct: 61 TNIVPLTNTISTRHTNI 77
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SP +T + P +S +T + P +SP +T + P +S YT + P +SP +
Sbjct: 1 SPRHTNIVPLTNTLSTRHTNILPLTNTLSPRHTNIVPLTNTLSTRYTNILPLTNTLSPRH 60
Query: 126 TQVSLAYTQVSLAYTQVSP 144
T + +S +T + P
Sbjct: 61 TNIVPLTNTISTRHTNIVP 79
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SP + + P +S +T + P +SP +T + P +S YT + +SP +
Sbjct: 1 SPRHTNIVPLTNTLSTRHTNILPLTNTLSPRHTNIVPLTNTLSTRYTNILPLTNTLSPRH 60
Query: 147 TQVSPAYTQVSPAYTQV 163
T + P +S +T +
Sbjct: 61 TNIVPLTNTISTRHTNI 77
Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
T+S +T + P +SP +T + P +S Y + P +SP +T + P +S
Sbjct: 13 TLSTRHTNILPLTNTLSPRHTNIVPLTNTLSTRYTNILPLTNTLSPRHTNIVPLTNTIST 72
Query: 117 AYTQVSP 123
+T + P
Sbjct: 73 RHTNIVP 79
>gi|308477179|ref|XP_003100804.1| hypothetical protein CRE_15485 [Caenorhabditis remanei]
gi|308264616|gb|EFP08569.1| hypothetical protein CRE_15485 [Caenorhabditis remanei]
Length = 698
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS--PAYTQVSP 116
+P Y +P Y +P Y ++P +P Y ++PAY +PAY S PAY +P
Sbjct: 294 TPMYGSKTPMYGAQTPMYGAMTPHAGDRTPHYGAMTPAYGGRTPAYGDGSRTPAYGSKTP 353
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
AY + + + AY + +PAY S +PAY + T
Sbjct: 354 AYGDLDEHSSARTPAYGNDN----GRTPAYGHGS----GRTPAYGNSENGRTPAYGGSTD 405
Query: 177 PGR-----ESNSRSSAYEAF 191
GR + R+ YE+
Sbjct: 406 SGRTPAYDHDSGRTPGYESL 425
>gi|225561523|gb|EEH09803.1| RNA polymerase II largest subunit [Ajellomyces capsulatus G186AR]
Length = 1234
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 56 YTVSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP + SP Y+ SP + SP + SP + P SPA+ P SPAY+ SP+Y Q
Sbjct: 1058 FNTSPTSPRYSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPAFAPTSPAYSPTSPSYQQ 1116
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
SP SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 1117 -SP----TSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 1164
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 43/146 (29%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPA----------------- 96
+ SP ++ SPA+ SPAY+ SP+Y Q SP+Y P SP
Sbjct: 1087 FMSSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSP 1146
Query: 97 -----------YTPVSPAY-----------TQVSPAYTQVSPAYTQVSPA-YTQVSLAYT 133
Y+P SPA + SP YT SP ++ SP Y+ S ++
Sbjct: 1147 ASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS 1206
Query: 134 QVSLA-YTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ SP + +SP
Sbjct: 1207 GSPTSPGGPTSPGYSPTSPTFNPISP 1232
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 59 SPAYTQVSPAYTQVSP-AYTQVSPAYT-----QVSP----AYIPVSPAYTPVSPAYTQVS 108
SP+Y+ SP ++ SP AY+ SP++ Q+SP Y P SP Y+P +P
Sbjct: 1688 SPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSPTSPTGYSPTSPQYSPRTPGRNNSG 1747
Query: 109 PAYTQVSP 116
Q SP
Sbjct: 1748 GNGDQYSP 1755
>gi|449270506|gb|EMC81173.1| hypothetical protein A306_11036, partial [Columba livia]
Length = 145
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT----QVSPAYTQVSPA 117
YT V P T V +T V P+ V P IP+ P++ PV P YT Q PA +Q +P
Sbjct: 8 YTPVPPQKTPVQSQHTPVPPSSISVVPRSIPLCPSFLPVQPQYTPDQSQYDPASSQQTPI 67
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
Q +PA Q + A Q S A++Q++ + Q +P+ T V P V S+ T V + I
Sbjct: 68 QPQYTPAQPQYTPAQPQHSPAHSQLNSSILQFNPSSTPVLPRSIPVYSSSTPVHPSSI 125
>gi|332018992|gb|EGI59531.1| tRNA (uracil-5-)-methyltransferase-like protein [Acromyrmex
echinatior]
Length = 1279
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 58 VSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
VSP VS ++SP SP ++SP P+ + P+SP +SP Q+S
Sbjct: 844 VSPIRVMVSDNRERREMSPLRRPFSPI-NRMSPPRRPIQVSGRPMSPMRRHISPPRPQLS 902
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
P Q+SP + L+ Q+SP +SP +SP+
Sbjct: 903 PPRRQISP---------MEYDLSARQLSPERRPMSPIVRMMSPS 937
>gi|78183109|gb|ABB29550.1| putative RNA polymerase II 215 kD subunit [Drosophila teissieri]
Length = 769
Score = 42.4 bits (98), Expect = 0.13, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
YT SP SP Y P SP Y+P SP Y SP Y +P +
Sbjct: 728 YTASSPG--GASPNYSPSSPNYSPTSPLYASASPRYASTTPNF 768
Score = 40.4 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
YT SP SP Y+P SP Y+ SP Y SP Y +P +
Sbjct: 728 YTASSPG--GASPNYSPSSPNYSPTSPLYASASPRYASTTPNF 768
>gi|408529840|emb|CCK28014.1| hypothetical protein BN159_3635 [Streptomyces davawensis JCM 4913]
Length = 346
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
SPA T SPA T+ SPA SPA SP+ T+ SPA T+ SPA T+ SPA
Sbjct: 52 SPAET--SPAPTETSPAPETTSPAPAESSPSATESSPASTESSPAATESSPA 101
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
SPA T SPA T+ SPA SPA SP+ T SPA T+ SPA T+ SPA +P+
Sbjct: 52 SPAET--SPAPTETSPAPETTSPAPAESSPSATESSPASTESSPAATESSPAPATSTPSD 109
Query: 126 TQ 127
+
Sbjct: 110 DE 111
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
SPA T+ SPA SPA + SP+ T+ SPA SPA T SPA +P+ +
Sbjct: 57 SPAPTETSPAPETTSPAPAESSPSATESSPASTESSPAATESSPAPATSTPSDDE 111
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
SPA T SPA T+ SPA SPA + SP+ T+ S A T+ S A T+ SPA +P+
Sbjct: 52 SPAET--SPAPTETSPAPETTSPAPAESSPSATESSPASTESSPAATESSPAPATSTPSD 109
Query: 154 TQ 155
+
Sbjct: 110 DE 111
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SPA T SPA T+ SPA SPA + S + T+ S A T+ SPA T+ SPA +P+
Sbjct: 52 SPAET--SPAPTETSPAPETTSPAPAESSPSATESSPASTESSPAATESSPAPATSTPSD 109
Query: 161 TQ 162
+
Sbjct: 110 DE 111
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
SPA T SPA SPA SPA + SP+ T+ SPA T+ SPA T+ S A
Sbjct: 52 SPAET--SPAPTETSPAPETTSPAPAESSPSATESSPASTESSPAATESSPA 101
>gi|240274624|gb|EER38140.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H143]
Length = 668
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 43/146 (29%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQ--VSPAYIPVSPA----------------- 96
+ SP ++ SPA+ SPAY+ SP+Y Q SP+Y P SP
Sbjct: 521 FMSSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSP 580
Query: 97 -----------YTPVSPAY-----------TQVSPAYTQVSPAYTQVSP-AYTQVSLAYT 133
Y+P SPA + SP YT SP ++ SP Y+ S ++
Sbjct: 581 ASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFS 640
Query: 134 QVSLA-YTQVSPAYTQVSPAYTQVSP 158
+ SP Y+ SP + +SP
Sbjct: 641 GSPTSPGGPTSPGYSPTSPTFNPISP 666
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Query: 56 YTVSPAYTQVSP--AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
+ SP + SP Y+ SP + SP + SP + P SPA+ P SPAY+ SP+Y Q
Sbjct: 492 FNTSPTSPRYSPSSGYSPTSPGMSITSPRFMS-SPGFSPASPAFAPTSPAYSPTSPSYQQ 550
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+ SP+Y+ S ++ S +Y+ SP+++ SPA++ SP+Y+ S A
Sbjct: 551 -----SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPA 598
>gi|114570852|ref|YP_757532.1| peptidase S8/S53 subtilisin kexin sedolisin [Maricaulis maris
MCS10]
gi|114341314|gb|ABI66594.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Maricaulis
maris MCS10]
Length = 959
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 47 STDEDEATVYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
++DE+ Y + P ++P + ++P ++P ++P Y +SP + ++P +
Sbjct: 28 NSDENAGDGYNFLHPYRGDINPFFGDINPFRGDINPFRGDINPFYGDISPFWGDINPFWG 87
Query: 106 QVSPAYTQVSPAYT-QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
++P ++P ++ ++P + ++ ++ ++ ++P + V P + ++ A+ + +
Sbjct: 88 DINPFGGDINPFFSDDINPFWGDINPFGDDINPFWSDINPFWRDVGPVWGDLNTAWNEAA 147
Query: 165 SA 166
+
Sbjct: 148 AG 149
Score = 42.0 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y + P ++P + ++P ++P ++P Y +SP + ++P + ++P
Sbjct: 36 GYNFLHPYRGDINPFFGDINPFRGDINPFRGDINPFYGDISPFWGDINPFWGDINPFGGD 95
Query: 121 VSPAYT-QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
++P ++ ++ + ++ ++P ++ ++P + V P + +++A+ +
Sbjct: 96 INPFFSDDINPFWGDINPFGDDINPFWSDINPFWRDVGPVWGDLNTAWNE 145
>gi|9630410|ref|NP_046842.1| gp26 [Mycobacterium phage D29]
gi|6136204|sp|O64220.3|VG26_BPMD2 RecName: Full=Minor tail protein Gp26
gi|3172274|gb|AAC18467.1| minor tail subunit [Mycobacterium phage D29]
Length = 837
Score = 42.0 bits (97), Expect = 0.16, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 63 TQVSPAYTQVSPAYTQVSPAY-TQVSPAYIPVSPAYTPV--------SPAYTQVSPAYTQ 113
TQ++P T ++PA+T ++ T ++ A + P T V + A + P
Sbjct: 376 TQLAPIITALTPAFTTLADTLGTMLTGALQALGPVLTVVAETLGTALTTALQAIQPMLPT 435
Query: 114 VSPAYTQVS--------PAYTQVSLAYTQVSLAYTQVSP--------AYTQVSPAYTQVS 157
+ ++ Q+S P Q+ A+ Q+ A Q++P A+ + PA Q++
Sbjct: 436 LVDSFKQLSETLVTSLGPYLPQIGEAFGQIVGAVIQLAPTIISSLIPAFQTLIPAIAQLA 495
Query: 158 PAYTQVSSAYTQVI 171
P+ Q+ A+T+++
Sbjct: 496 PSLVQIVQAFTKLM 509
>gi|331240838|ref|XP_003333069.1| hypothetical protein PGTG_14855 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 592
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 105 TQVSPA--YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+Q+ PA YT+++ +T+++ T+++ YT++++ +T+ + YT+ T+++ YT+
Sbjct: 266 SQLEPAKEYTELATEHTELATENTELATDYTELAINHTEPATEYTEPVTEDTELAKEYTE 325
Query: 163 VSSAYTQVILNKIRPG 178
++ YT+++ + PG
Sbjct: 326 PATDYTELVTDHTEPG 341
Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
SP +Q+ PA YT ++ +T+++ T+++ YT+++ +T+ + Y
Sbjct: 255 SPVICNTPHPLSQLEPAK-----EYTELATEHTELATENTELATDYTELAINHTEPATEY 309
Query: 133 TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
T+ T+++ YT+ + YT++ +T+ + YT++ +
Sbjct: 310 TEPVTEDTELAKEYTEPATDYTELVTDHTEPGANYTELTI 349
>gi|198431629|ref|XP_002120315.1| PREDICTED: similar to Fucosidase, alpha-L- 1, tissue [Ciona
intestinalis]
Length = 550
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT--------QV 135
TQ + P +T P +T+ P +T+ P +TQ P +TQ L + QV
Sbjct: 45 TQKQLVFTKRRPVFTEKQPVFTRKQPDFTKKQPVFTQKQPVFTQKHLKHRLKNNQFLPQV 104
Query: 136 SLAYT---QVSPAYTQVSPAYTQV-SPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEAF 191
LA + + SPA + + YT + P ++ + S + + G + + +F
Sbjct: 105 HLARSTSPKKSPATSTANQNYTGLYKPVWSSLDSRPLPQWFDNAKFGIFIHWGVYSVPSF 164
Query: 192 FHEWVWMSW 200
++EW W W
Sbjct: 165 YNEWFWWYW 173
>gi|318077913|ref|ZP_07985245.1| beta keto-acyl synthase [Streptomyces sp. SA3_actF]
Length = 2098
Score = 42.0 bits (97), Expect = 0.17, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
DEA Y + AY + AY +P+ AY Q PAY +PAY P Y +PA
Sbjct: 979 DEAPGYERTRAYGEAPTAYGDEAPSQGAAPTAYGQPVPAYGQSAPAYGQPVPTYGATAPA 1038
Query: 111 YTQ 113
+ Q
Sbjct: 1039 HGQ 1041
Score = 37.0 bits (84), Expect = 6.5, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
+P Y + + AY + AY + + AY Q PAY Q +PAY Q P Y + A+
Sbjct: 981 APGYER-TRAYGEAPTAYGDEAPSQGAAPTAYGQPVPAYGQSAPAYGQPVPTYGATAPAH 1039
Query: 168 TQ 169
Q
Sbjct: 1040 GQ 1041
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAY 132
YTP SP Y+ SP Y+ P Y+ SP Y+ S AY
Sbjct: 1868 YTPTSPNYSPSSPTYSPAVPGYSPTSPTYSPTSPAY 1903
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
+SP Y+ SP + SP+ T SP Y+ SP+Y P SP Y+P
Sbjct: 1583 MSPTYSPSSPTFVPTSPSLTPASPNYSPTSPSYSPTSPNYSP 1624
Score = 40.0 bits (92), Expect = 0.65, Method: Composition-based stats.
Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSPAYTQVSPA 117
SP YT +P Y+ SP Y+ SP+Y+ SP + P S Y+P SP Y+ SP+Y+ SP
Sbjct: 1794 SPQYTPATPQYSPTSPTYSPTSPSYSPSSPQHTPGASTRYSPTSPNYSPASPSYSPSSPQ 1853
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Y+ S Y+ S YT S Y+ SP Y+ P Y+ SP Y+ S AY
Sbjct: 1854 YSPSSSKYSPTSPTYTPTSPNYSPSSPTYSPAVPGYSPTSPTYSPTSPAY 1903
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 52/106 (49%), Gaps = 27/106 (25%)
Query: 58 VSPAYTQVSPAYTQVSPAY-TQVSPAYTQVSPAYIPVSPAYTPVSP--AYTQVSPAYTQV 114
+SP Y SPAY+ SP T + A + SP Y SPAY+P SP A + SP Y
Sbjct: 1570 MSPVY---SPAYSPTSPMSPTSPANALSPTSPVY---SPAYSPTSPTSAMSPTSPVY--- 1620
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SPAY+ SP +L Y SP Y SPAY+ SP Y
Sbjct: 1621 SPAYSPTSP------------NLGYAPTSPVY---SPAYSPTSPNY 1651
>gi|78183111|gb|ABB29551.1| putative RNA polymerase II 215 kD subunit [Drosophila yakuba]
Length = 766
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
YT SP SP Y P SP Y+P SP Y SP Y +P
Sbjct: 728 YTASSPG--GASPNYSPSSPNYSPTSPLYASASPRYASTTP 766
Score = 39.7 bits (91), Expect = 0.86, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
YT SP SP Y+P SP Y+ SP Y SP Y +P
Sbjct: 728 YTASSPG--GASPNYSPSSPNYSPTSPLYASASPRYASTTP 766
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSP 102
AY+ SP+Y+ SP Y P SP+Y+P SP
Sbjct: 1615 AYSPTSPSYSPTSPGYSPTSPSYSPTSP 1642
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
AY+ SP+Y P SP Y+P SP+Y+ SP
Sbjct: 1615 AYSPTSPSYSPTSPGYSPTSPSYSPTSP 1642
Score = 42.0 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
AY P SP+Y+P SP Y+ SP+Y+ SP
Sbjct: 1615 AYSPTSPSYSPTSPGYSPTSPSYSPTSP 1642
Score = 39.7 bits (91), Expect = 0.80, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
AY+P SP+Y+ SP Y+ SP+Y+ SP
Sbjct: 1615 AYSPTSPSYSPTSPGYSPTSPSYSPTSP 1642
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
Y+ + Y+ SPAY SPAYT S +SPA +P SPA +PVS Q SP
Sbjct: 1803 YSPTSQYSPTSPAYGASSPAYTPQS----NLSPASLP-SPALSPVS----QKSP 1847
Score = 36.6 bits (83), Expect = 8.3, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
AY+ SP+Y+ SP Y+ SP+Y P SP Y+P
Sbjct: 1615 AYSPTSPSYSPTSPGYSPTSPSYSPTSPRYSP 1646
Score = 36.2 bits (82), Expect = 9.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSP 88
AY+ SP+Y+ SP Y+ SP+Y+ SP
Sbjct: 1615 AYSPTSPSYSPTSPGYSPTSPSYSPTSP 1642
>gi|260786616|ref|XP_002588353.1| hypothetical protein BRAFLDRAFT_81492 [Branchiostoma floridae]
gi|229273514|gb|EEN44364.1| hypothetical protein BRAFLDRAFT_81492 [Branchiostoma floridae]
Length = 4660
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VSP Q +QVSP Q +QVSP + + VSP Q +QVSP
Sbjct: 1467 VSPILVQHMEHRSQVSPILVQHMEHRSQVSPILVQHMEHRSQVSPIVVQHMEHRSQVSPI 1526
Query: 118 YTQVSPAYTQVS---LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
Q +QVS + + QVSL Q +QVS Q +QVS Q
Sbjct: 1527 LVQHMEHRSQVSPILVQHMQVSLILVQHMEHTSQVSLNLVQHMEHRSQVSLNLVQ 1581
Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P Q +QVSP Q +QVSP + + VSP Q +QVSP
Sbjct: 1455 PILVQHMEHRSQVSPILVQHMEHRSQVSPILVQHMEHRSQVSPILVQHMEHRSQVSPIVV 1514
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
Q +QVS Q +QVSP Q + QVS Q +QV LN ++
Sbjct: 1515 QHMEHRSQVSPILVQHMEHRSQVSPILVQ----HMQVSLILVQHMEHTSQVSLNLVQ 1567
>gi|423404287|ref|ZP_17381460.1| X-X-X-Leu-X-X-Gly heptad repeats protein [Bacillus cereus BAG2X1-2]
gi|401647494|gb|EJS65103.1| X-X-X-Leu-X-X-Gly heptad repeats protein [Bacillus cereus BAG2X1-2]
Length = 1044
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
TVS ++++ QV+ VS TQ++ V+ VS Q++ Q++
Sbjct: 663 TVSAGVSKLADGSGQVTGGLGAVSVVVTQLADGSSQVTGGLGTVSAGANQMAGGVNQLAD 722
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI--LNK 174
+QV+ +S+ Q++ TQ++ +QV+ ++ ++S+ TQ+I +NK
Sbjct: 723 GSSQVTGGLGTLSVGANQMTGGITQLADGSSQVTTGLGTLNGGLNKMSTGSTQLIDGVNK 782
Query: 175 IRPG 178
+ G
Sbjct: 783 LADG 786
>gi|121719675|ref|XP_001276536.1| RNA polymerase Rpb1 C-terminal repeat domain protein [Aspergillus
clavatus NRRL 1]
gi|119404748|gb|EAW15110.1| RNA polymerase Rpb1 C-terminal repeat domain protein [Aspergillus
clavatus NRRL 1]
Length = 1245
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 44 DYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
D+ D + + T +PA SPA SP Y SPA+ SP + P SP + + P
Sbjct: 356 DFSEQDAFSSVLQTAAPASKSPSPAPQAASPVYQPASPAFNSTSPDFNPSSPVFQDIPPQ 415
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
+ SP Y+ SP SP VS S + SPA SP
Sbjct: 416 HRAGSP-YS-ASPVQRMASPMANPVSPLQKYASPSAKPASPAVKNSSP 461
>gi|307177348|gb|EFN66521.1| Putative methyltransferase CXorf34 [Camponotus floridanus]
Length = 1315
Score = 41.6 bits (96), Expect = 0.21, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSP------AYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
+SP +SP Q+SP ++SP + Q+SP +SP P+SP Q+S
Sbjct: 929 MSPIRCHISPPRLQLSPPRREISPIGIYDSSARQISPMRRQISPMRRPMSPMDHQMSTDR 988
Query: 112 TQVSPAYTQVSPAYTQ 127
VSP +SP+ ++
Sbjct: 989 RPVSPVGRMMSPSRSR 1004
Score = 40.0 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 36/134 (26%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSP---------AYTQVSPAYIPVSP--------------- 95
P T SP++ + SP SP Q++P P SP
Sbjct: 861 PYETHNSPSHREYSPPRRLASPLRHMASSSGGRLQITPPRRPFSPLNRAMSPPRRPMSPP 920
Query: 96 ----AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P+SP +SP Q+SP ++SP S A Q+SP Q+SP
Sbjct: 921 RRSMTGRPMSPIRCHISPPRLQLSPPRREISPIGIYDSSA--------RQISPMRRQISP 972
Query: 152 AYTQVSPAYTQVSS 165
+SP Q+S+
Sbjct: 973 MRRPMSPMDHQMST 986
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 41.6 bits (96), Expect = 0.22, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 26/108 (24%)
Query: 80 SPAYTQ---VSPAYIPVSPA----YTPVSPAY--TQVSPAYTQVSPAYTQVSPAYTQVSL 130
SPA SP+Y P SP Y+P SPA + SP+Y+ SP Y+ SP +
Sbjct: 1623 SPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGATS 1682
Query: 131 AYTQVSL---------AYTQVSPAY--------TQVSPAYTQVSPAYT 161
+ AY+ SP++ + SP Y+ SP ++
Sbjct: 1683 PSYSPASPSWSPTSPDAYSPTSPSFGRSPGQQQSPTSPGYSPTSPQFS 1730
Score = 37.4 bits (85), Expect = 3.9, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 34/108 (31%)
Query: 44 DYLSTDEDEATVYTVSPA-YTQVSPAY--TQVSPAYTQVSPAYTQVSP------------ 88
+Y T + SP Y+ SPA + SP+Y+ SP Y+ SP
Sbjct: 1628 NYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGATSPSYSP 1687
Query: 89 -----------AYIPVSPAY--------TPVSPAYTQVSPAYTQVSPA 117
AY P SP++ +P SP Y+ SP ++ +P
Sbjct: 1688 ASPSWSPTSPDAYSPTSPSFGRSPGQQQSPTSPGYSPTSPQFSPRTPG 1735
>gi|308451868|ref|XP_003088830.1| hypothetical protein CRE_20631 [Caenorhabditis remanei]
gi|308245173|gb|EFO89125.1| hypothetical protein CRE_20631 [Caenorhabditis remanei]
Length = 562
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS--PAYTQVSP 116
+P Y +P Y +P Y ++P +P Y ++PAY +PAY S PAY +P
Sbjct: 158 TPMYGSKTPMYGAQTPMYGAMTPHAGDRTPHYGAMTPAYGGRTPAYGDGSRTPAYGSKTP 217
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
AY + + + AY + +PAY S +PAY + T
Sbjct: 218 AYGDLDEHSSARTPAYGNDN----GRTPAYGHDS----GRTPAYGNSENGRTPAYGGSTD 269
Query: 177 PGR-----ESNSRSSAYEAF 191
GR + R+ YE+
Sbjct: 270 SGRTPAYDHDSGRTPGYESL 289
>gi|342221170|gb|AEL17765.1| gp28 [Mycobacterium phage Turbido]
Length = 847
Score = 41.6 bits (96), Expect = 0.23, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 25/136 (18%)
Query: 61 AYTQVSPAYTQVSPAYTQVS---------------PAYTQVS--------PAYIPVSPAY 97
A +Q++P T ++PA+T ++ P V+ A + P
Sbjct: 378 ALSQLAPIITSLTPAFTTLANTLGTLLVGNLQSLGPILNMVAGFLGGAIKSALDAIQPML 437
Query: 98 TPVSPAYTQVSPAY-TQVSPAYTQVSPAYTQVSLAYTQVS-LAYTQVSPAYTQVSPAYTQ 155
+ ++ Q+S TQ+ P Q++ A+ Q+ + Q++ + +Q+ PA+ Q+ P +
Sbjct: 438 PGLIQSFAQLSQTLVTQLGPMLPQLATAFGQLVGSVVQLAPMIISQLVPAFIQLVPKIAE 497
Query: 156 VSPAYTQVSSAYTQVI 171
+ PA TQ+ ++ ++
Sbjct: 498 MVPAITQMVQSFANMM 513
Score = 41.2 bits (95), Expect = 0.27, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAY-TQVSPAYIPVSPAYTPVSPAYTQVSPA 110
+ V + P Q++ A+ Q+ + Q++P +Q+ PA+I + P + PA TQ+ +
Sbjct: 449 QTLVTQLGPMLPQLATAFGQLVGSVVQLAPMIISQLVPAFIQLVPKIAEMVPAITQMVQS 508
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLA 138
+ + P ++ A V+ A QV ++
Sbjct: 509 FANMMPVILPLASALLSVAGAVIQVGVS 536
Score = 41.2 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
TQ+ P Q++ A+ Q+ + Q++P I + PA+ + P ++ PA TQ+ ++ +
Sbjct: 453 TQLGPMLPQLATAFGQLVGSVVQLAPMIISQLVPAFIQLVPKIAEMVPAITQMVQSFANM 512
Query: 122 SPAYTQVSLAYTQVSLAYTQV 142
P ++ A V+ A QV
Sbjct: 513 MPVILPLASALLSVAGAVIQV 533
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 52/106 (49%), Gaps = 27/106 (25%)
Query: 58 VSPAYTQVSPAYTQVSPAY-TQVSPAYTQVSPAYIPVSPAYTPVSP--AYTQVSPAYTQV 114
+SP Y SPAY+ SP T + A + SP Y SPAY+P SP A + SP Y
Sbjct: 1567 ISPVY---SPAYSPTSPMSPTSPTSALSPTSPVY---SPAYSPTSPTSAMSPTSPVY--- 1617
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SPAY+ SP +L Y SP Y SPAY+ +P Y
Sbjct: 1618 SPAYSPTSP------------NLGYAPTSPVY---SPAYSPTTPNY 1648
>gi|320095249|ref|ZP_08026946.1| 4-hydroxybenzoate octaprenyltransferase [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977790|gb|EFW09436.1| 4-hydroxybenzoate octaprenyltransferase [Actinomyces sp. oral taxon
178 str. F0338]
Length = 192
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T++S Y P + P P+YT P Y Q P Y Q P Y Q Y Q Y Q
Sbjct: 9 TKMSDPYNPYAQPQQPAGPSYTP-DPGYGQPQPGYGQPQPGYGQPQQGYGQS--GYGQPQ 65
Query: 144 PAYTQVSPAYTQ----VSPAYTQVSSAYT 168
P Y Q P Y Q P Y S A T
Sbjct: 66 PMYGQPQPMYGQPLSSFGPEYELRSRAGT 94
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 32 ILIEKFKRKDLED----YLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 87
+++E + + D Y + YT P Y Q P Y Q P Y Q Y Q
Sbjct: 1 MVVELDRETKMSDPYNPYAQPQQPAGPSYTPDPGYGQPQPGYGQPQPGYGQPQQGYGQS- 59
Query: 88 PAYIPVSPAYTPVSPAYTQVSPAYTQ----VSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
Y P Y Q P Y Q P Y S A T L + A+
Sbjct: 60 --------GYGQPQPMYGQPQPMYGQPLSSFGPEYELRSRAGTVFGLGLASLICAFCNFI 111
Query: 144 P 144
P
Sbjct: 112 P 112
>gi|403179980|ref|XP_003338268.2| hypothetical protein PGTG_19703 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165590|gb|EFP93849.2| hypothetical protein PGTG_19703 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 639
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 101 SPAYTQVSPAYTQVSPA--YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP + +Q+ P +T+++ +T+++ YT+++ Y +++ YT+++ YT+++
Sbjct: 280 SPVICNTPHSLSQLEPVTDHTELATDHTELATDYTELATDYMELATDYTELATDYTELAT 339
Query: 159 AYTQVSSAYTQVILNKIRPGR 179
YT++ + YT+++++ P +
Sbjct: 340 DYTELETDYTELVMDVSLPSK 360
Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 94 SPAYTPVSPAYTQVSPA--YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP + +Q+ P +T+++ +T+++ YT+++ Y +++ YT+++ YT+++
Sbjct: 280 SPVICNTPHSLSQLEPVTDHTELATDHTELATDYTELATDYMELATDYTELATDYTELAT 339
Query: 152 AYTQVSPAYTQV 163
YT++ YT++
Sbjct: 340 DYTELETDYTEL 351
>gi|271970415|ref|YP_003344611.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270513590|gb|ACZ91868.1| hypothetical protein Sros_9250 [Streptosporangium roseum DSM 43021]
Length = 556
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 86 VSPAYIPVSPAYTP-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP 144
P+ +P +PA T V P QV P Q+ P QV P QV QV Q+ P
Sbjct: 468 TDPSTLPPAPAGTSQVEPDTGQVQPDTRQIRPDTRQVQPDTRQVQPGTGQVQPDTQQIRP 527
Query: 145 AYTQVSPAYTQVSPAYTQV 163
QV P QV P QV
Sbjct: 528 DTRQVRPDTGQVQPGTGQV 546
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 32/78 (41%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
D +T+ +QV P QV P Q+ P QV P V P V P Q+ P
Sbjct: 469 DPSTLPPAPAGTSQVEPDTGQVQPDTRQIRPDTRQVQPDTRQVQPGTGQVQPDTQQIRPD 528
Query: 111 YTQVSPAYTQVSPAYTQV 128
QV P QV P QV
Sbjct: 529 TRQVRPDTGQVQPGTGQV 546
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 28/71 (39%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
A V P QV P Q+ P QV P QV P V P + P QV P
Sbjct: 478 AGTSQVEPDTGQVQPDTRQIRPDTRQVQPDTRQVQPGTGQVQPDTQQIRPDTRQVRPDTG 537
Query: 113 QVSPAYTQVSP 123
QV P QV P
Sbjct: 538 QVQPGTGQVQP 548
>gi|294875463|ref|XP_002767333.1| merozoite surface protein-3, putative [Perkinsus marinus ATCC
50983]
gi|239868896|gb|EER00051.1| merozoite surface protein-3, putative [Perkinsus marinus ATCC
50983]
Length = 561
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
+VS +VS V+ VS +VS +VS +V+ +VS +V
Sbjct: 116 TAEVSEGIVEVSEGTAEVNEETAEVSEETAEVSEGIVEVSEGTAEVNEETAEVSEGIVEV 175
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
S +VS +V+ +VS +VS +V
Sbjct: 176 SEGTAEVSEETVEVNEGTAEVSEETAEVSEETAEV 210
>gi|13928546|dbj|BAB47147.1| complement component C6 [Branchiostoma belcheri]
Length = 921
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 41 DLEDYLSTDEDEATVYTVSPAY-----TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP 95
D+ D STD + V+ A+ SP SP + SP SP SP
Sbjct: 809 DISDERSTDAPTDSGSDVAAAFPGGPDADTSPGDADTSPGDAETSPGDADTSPGDAETSP 868
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
SP + SP SP + SPA
Sbjct: 869 GDAETSPGDAETSPGDADTSPGDAETSPA 897
>gi|414090212|ref|YP_006990329.1| putative envelope protein [Streptococcus phage phiNJ2]
gi|408732228|gb|AFU88670.1| putative envelope protein [Streptococcus phage phiNJ2]
Length = 1058
Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A ++ A V+P ++ A+ +SP I A + + +++ ++P T + A +Q
Sbjct: 521 ALQGLAQALVIVAPVLPTIASAFAMLSPVIIAAGAAISMIVSSFSSLAPVITALGTALSQ 580
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
V T +S Q++ T V+P +S A+ QV T VS A ++I
Sbjct: 581 V---ITAISSGIAQIA---TAVTPIVAIISNAFVQV---VTVVSQAIVEII 622
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ-VSP 116
V+P ++ A+ +SP A + + ++ ++P T + A +QV A + ++
Sbjct: 532 VAPVLPTIASAFAMLSPVIIAAGAAISMIVSSFSSLAPVITALGTALSQVITAISSGIAQ 591
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
T V+P +S A+ QV T VS A ++ A PA +++ A V+
Sbjct: 592 IATAVTPIVAIISNAFVQV---VTVVSQAIVEIIQALAPFIPAVSEMVQAVAPVL 643
Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T ++ A ++ A V+P ++ A+ +SP A + + +++ ++P T +
Sbjct: 516 TILNLALQGLAQALVIVAPVLPTIASAFAMLSPVIIAAGAAISMIVSSFSSLAPVITALG 575
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
A +QV T +S Q++ T V+P +S A+ QV + +Q I+ I+
Sbjct: 576 TALSQV---ITAISSGIAQIA---TAVTPIVAIISNAFVQVVTVVSQAIVEIIQ 623
>gi|186681873|ref|YP_001865069.1| hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
gi|186464325|gb|ACC80126.1| WD-40 repeat protein [Nostoc punctiforme PCC 73102]
Length = 1833
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 35 EKFKRKDLEDYL--STDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP 92
+K +LE L S + A+ S + Q S + QVS + QVS + QVS +
Sbjct: 606 DKGDEGELEGQLPPSEGQHSASEGQHSASEGQHSASEGQVSASEGQVSASEGQVSASEGQ 665
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ P+ +S + Q+S + Q+SP+ Q+ P+ Q+S + QVS + Q+ P+ Q+ P+
Sbjct: 666 LPPSEGQLSSSEGQLSSSEGQLSPSEGQLPPSEGQLSSSEGQVSSSEGQLPPSEGQLPPS 725
Query: 153 YTQVSPAYTQVSSAYTQVILNKIRPGRESNSRS----SAYEAFF 192
Q+S + TQ ++++++ + N R+ +E FF
Sbjct: 726 EGQLSS----LELGTTQYLISRLKENEQRNLRTVLIFDQFEEFF 765
>gi|374994405|ref|YP_004969904.1| stress response protein, TerZ- and CABP1 [Desulfosporosinus
orientis DSM 765]
gi|357212771|gb|AET67389.1| putative stress response protein, TerZ- and CABP1
[Desulfosporosinus orientis DSM 765]
Length = 482
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+ V +P Y Y Y Q +P+Y Q + +Y Q + +Y Q + +Y Q
Sbjct: 190 LEVEEDQRSTAPGY----GGYQNTQNPYGQNAPSYGQNTSSYGQSTSSYGQSASSYGQNV 245
Query: 151 PAYTQVSPAYTQVSSAY 167
PAY +P+Y Q +S+Y
Sbjct: 246 PAYGSNTPSYGQNNSSY 262
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
L +ED+ + Y Y Q +P+Y Q + +Y Q + +Y + +Y PAY
Sbjct: 190 LEVEEDQRSTAPGYGGYQNTQNPYGQNAPSYGQNTSSYGQSTSSYGQSASSYGQNVPAYG 249
Query: 106 QVSPAYTQVSPAY 118
+P+Y Q + +Y
Sbjct: 250 SNTPSYGQNNSSY 262
>gi|91091508|ref|XP_969167.1| PREDICTED: similar to lipocalin-1 interacting membrane receptor
(limr) [Tribolium castaneum]
gi|270000933|gb|EEZ97380.1| hypothetical protein TcasGA2_TC011205 [Tribolium castaneum]
Length = 516
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 36 KFKRKDLEDYLSTDEDEATVYTVS 59
+FKRK EDY STDEDE TVY +S
Sbjct: 43 RFKRKGREDYYSTDEDEVTVYRIS 66
>gi|357636353|ref|ZP_09134228.1| agglutinin receptor [Streptococcus macacae NCTC 11558]
gi|357584807|gb|EHJ52010.1| agglutinin receptor [Streptococcus macacae NCTC 11558]
Length = 1153
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 42/124 (33%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
D+D A T Y Q AYT Y Q AYT Y AY Y +
Sbjct: 224 DQDLAVYKTAKAKYDQDLAAYTIAKNKYDQDLAAYTIAKNKYDQDLAAYNRAKAQYDKDK 283
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y Q AY Y + Y Q AY + Y Q Y Q AY + Y
Sbjct: 284 AQYDQDLAAYNTAKAQYDKDKAQYDQDLAAYNRAKAQYDQDKAQYDQDLAAYNMAKAQYD 343
Query: 169 QVIL 172
Q ++
Sbjct: 344 QELI 347
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 41/123 (33%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
D+D A T Y Q Y Y Q AYT Y AYT Y Q
Sbjct: 210 DQDLAVYKTAKAKYDQDLAVYKTAKAKYDQDLAAYTIAKNKYDQDLAAYTIAKNKYDQDL 269
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
AY + Y + Y Q AY Y + Y Q AY + Y Q + Y
Sbjct: 270 AAYNRAKAQYDKDKAQYDQDLAAYNTAKAQYDKDKAQYDQDLAAYNRAKAQYDQDKAQYD 329
Query: 169 QVI 171
Q +
Sbjct: 330 QDL 332
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 47/138 (34%)
Query: 49 DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVS 108
D+D A Y Q AYT Y Q AY + Y Y AY
Sbjct: 238 DQDLAAYTIAKNKYDQDLAAYTIAKNKYDQDLAAYNRAKAQYDKDKAQYDQDLAAYNTAK 297
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
Y + Y Q AY + Y Q Y Q AY Y Q AY S Y
Sbjct: 298 AQYDKDKAQYDQDLAAYNRAKAQYDQDKAQYDQDLAAYNMAKAQYDQELIAYEAAKSKYD 357
Query: 169 QVILNKIRPGRESNSRSS 186
Q ++ + +E+ ++ +
Sbjct: 358 QDLIAYEKALKEAQAKRN 375
>gi|398806265|ref|ZP_10565177.1| hypothetical protein PMI15_04020, partial [Polaromonas sp. CF318]
gi|398088718|gb|EJL79273.1| hypothetical protein PMI15_04020, partial [Polaromonas sp. CF318]
Length = 189
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 55 VYTVSPAYTQVS----PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
V + P T+V P ++ P T+V P + + +SP V P +SP
Sbjct: 68 VAVLRPDETEVDSELKPVEMELKPVETEVKPVDRDATLLSVVLSPVERDVMPLAAVLSPD 127
Query: 111 YTQVS----PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
T V P ++ P T++ +V+L + P ++V P + P V S
Sbjct: 128 ETDVDSELKPVEMELKPVETELKPVDREVTLLLAVLRPVDSEVMPLVAVLKPVDVDVDSE 187
Query: 167 YT 168
T
Sbjct: 188 VT 189
>gi|389585109|dbj|GAB67840.1| hypothetical protein PCYB_124060, partial [Plasmodium cynomolgi
strain B]
Length = 1534
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P + TQV + TQ+ + TQV + TQ+ ++TQ+ + TQ+ + TQ+ + TQ+
Sbjct: 888 PPRASNTQVRLSSTQLRSSNTQVRSSNTQLRSSHTQLRSSNTQLRSSNTQLRSSNTQLRL 947
Query: 159 AYTQVSSAYTQVILN 173
+ T +++ TQ + N
Sbjct: 948 SGTSRTASVTQEVEN 962
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 40.8 bits (94), Expect = 0.39, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYT 105
SP YT SP Y P SP Y+P SP+Y+
Sbjct: 1776 SPQYTPASPQYSPTSPTYSPTSPSYS 1801
Score = 40.4 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 73 SPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP YT SP Y+ SP Y P SP+Y+P
Sbjct: 1776 SPQYTPASPQYSPTSPTYSPTSPSYSP 1802
Score = 40.4 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYT 112
SP Y P SP Y+P SP Y+ SP+Y+
Sbjct: 1776 SPQYTPASPQYSPTSPTYSPTSPSYS 1801
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 94 SPAYTPVSPAYTQVSPAYTQVSPAYT 119
SP YTP SP Y+ SP Y+ SP+Y+
Sbjct: 1776 SPQYTPASPQYSPTSPTYSPTSPSYS 1801
Score = 37.7 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y+ S Y SP+ T SP Y+ SP+Y P SP Y+P
Sbjct: 1581 SPLYSPHSNLYAPASPSSTPASPTYSPTSPSYSPTSPNYSP 1621
>gi|330841420|ref|XP_003292696.1| hypothetical protein DICPUDRAFT_83299 [Dictyostelium purpureum]
gi|325077040|gb|EGC30780.1| hypothetical protein DICPUDRAFT_83299 [Dictyostelium purpureum]
Length = 525
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 20/165 (12%)
Query: 55 VYTVSPAYTQ----VSPAY----TQVSPAYTQVSPAYTQ----VSPAYIPVSPAYTPV-- 100
+ S AYTQ ++ Y Q +P S AYTQ ++ YI + TP+
Sbjct: 70 INNSSIAYTQGSGPINNGYITCTQQSTPTSNNSSIAYTQRSGPINNGYISCTQESTPINN 129
Query: 101 --SPAYTQVSPAYTQVSPAYTQVS-PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
S AYTQ S TQ S P S+AYTQ S A TQ S +
Sbjct: 130 NSSIAYTQRSGPINNGDITCTQESTPINNNSSIAYTQRSSPINNGDIACTQESNPVNNNN 189
Query: 158 PAYTQVSS-AYTQVILNKIR--PGRESNSRSSAYEAFFHEWVWMS 199
YTQ+S+ + LN P + S +R+ ++++ H+++ S
Sbjct: 190 INYTQISTPTNNNLTLNHCDQSPQQYSQNRTESHQSPVHQFICSS 234
>gi|331221098|ref|XP_003323224.1| hypothetical protein PGTG_04761 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 658
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 49/74 (66%)
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
YT+++ +T+++ +T+++ YT++++ +T+ + YT+ + YT++ +T+++ Y +
Sbjct: 294 YTELATEHTELATEHTELATDYTELAINHTEPATEYTEPATDYTELVKDHTELAKEYAES 353
Query: 164 SSAYTQVILNKIRP 177
++ YT++ + + P
Sbjct: 354 ATDYTKLAKDYMEP 367
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 66 SPAYTQVSPAYTQVSPA--YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
SP +Q+ PA YT+++ + ++ +T ++ YT+++ +T+ + YT+ +
Sbjct: 275 SPVICNTPHPLSQLEPATEYTELATEHTELATEHTELATDYTELAINHTEPATEYTEPAT 334
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
YT++ +T+++ Y + + YT+++ Y + YT+ + A T+ +++
Sbjct: 335 DYTELVKDHTELAKEYAESATDYTKLAKDYMEPETNYTEPTIADTENLID 384
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 51/87 (58%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT+++ +T+++ +T+++ YT+++ + + YT + YT++ +T+++ Y +
Sbjct: 294 YTELATEHTELATEHTELATDYTELAINHTEPATEYTEPATDYTELVKDHTELAKEYAES 353
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
+ YT+++ Y + YT+ + A T+
Sbjct: 354 ATDYTKLAKDYMEPETNYTEPTIADTE 380
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 53 ATVYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
AT YT ++ +T+++ +T+++ YT+++ +T+ + Y + YT + +T+++ Y
Sbjct: 291 ATEYTELATEHTELATEHTELATDYTELAINHTEPATEYTEPATDYTELVKDHTELAKEY 350
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQ 141
+ + YT+++ Y + YT+ ++A T+
Sbjct: 351 AESATDYTKLAKDYMEPETNYTEPTIADTE 380
>gi|331252282|ref|XP_003338705.1| hypothetical protein PGTG_20234 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 702
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 53 ATVYTVSPA--YTQVSPAYTQVSPAYTQVSPAYTQVSPAYI-PVSPAYTPVSPAYTQVSP 109
AT YT PA YT+++ +T+ + +T+++ YT+++ + PV+ PV+ T+++
Sbjct: 291 ATEYT-EPATEYTELAKEHTEPATEHTELATDYTELAINHTEPVTEHTEPVT-ENTELAT 348
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
YT+ + T+++ Y +++ T+ YT++ +T+ YT++ +T+ + YT+
Sbjct: 349 EYTEPATENTELATDYVELATDCTEPETDYTELVTDHTEPETDYTELVTDHTEPEANYTE 408
Query: 170 VIL 172
+ +
Sbjct: 409 LTI 411
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 61 AYTQVSPA--YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+ +Q+ PA YT+ + YT+++ +T+ + + ++ YT ++ +T+ +T+
Sbjct: 284 SLSQLEPATEYTEPATEYTELAKEHTEPATEHTELATDYTELAINHTEPVTEHTEPVTEN 343
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
T+++ YT+ + T+++ Y +++ T+ YT++ +T+ + YT+++ + P
Sbjct: 344 TELATEYTEPATENTELATDYVELATDCTEPETDYTELVTDHTEPETDYTELVTDHTEP 402
>gi|160880940|ref|YP_001559908.1| chromosome segregation ATPase-like protein [Clostridium
phytofermentans ISDg]
gi|160429606|gb|ABX43169.1| Chromosome segregation ATPase-like protein [Clostridium
phytofermentans ISDg]
Length = 2228
Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 55/113 (48%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+ TQVS T V+ T ++ TQV+ V+ T ++ TQV+ T V+
Sbjct: 1025 VAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVARIETSITEIETQVAVIDTNVAKI 1084
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+ TQVS+ T V+ T ++ TQV+ T V+ T ++ TQV
Sbjct: 1085 ESAVAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVAKIETAITEIQTQV 1137
Score = 39.7 bits (91), Expect = 0.86, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
TQV+ T V+ + V+ TQVS V+ T ++ TQV+ T V+ T ++
Sbjct: 1009 TQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVARIETSIT 1068
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQV++ T V+ + V+ TQVS T V+ T ++ TQV
Sbjct: 1069 EIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAITEIQTQV 1116
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
TQV+ T V+ T ++ TQV+ V+ + V+ TQVS T V+ T ++
Sbjct: 764 TQVAVIDTNVAKIETAITEIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAIT 823
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQV++ T V+ T ++ TQVS T V+ T + TQV
Sbjct: 824 EIQTQVAVIDTNVAKIETAITEIQTQVSVIDTNVARIETSIIEIQTQV 871
Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 53/114 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++ TQV+ T V+ T ++ TQVS V+ T + TQV+ T V+
Sbjct: 822 ITEIQTQVAVIDTNVAKIETAITEIQTQVSVIDTNVARIETSIIEIQTQVAVIDTNVARI 881
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ V+ TQVS+ T VS+ T V T V TQVS T V+ T +I
Sbjct: 882 ESAVAEIETQVSVIDTNVSVIETIVGRIETSVVEIQTQVSVIDTNVARIETSII 935
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 53/114 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+ TQVS T V+ T ++ TQV+ V+ T ++ TQVS T V+
Sbjct: 801 VAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVAKIETAITEIQTQVSVIDTNVARI 860
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
T + TQV++ T V+ + V+ TQVS T VS T V T V+
Sbjct: 861 ETSIIEIQTQVAVIDTNVARIESAVAEIETQVSVIDTNVSVIETIVGRIETSVV 914
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 53/108 (49%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
TQV+ T V+ T ++ TQV+ V+ + V+ TQVS T V+ T ++
Sbjct: 988 TQVAVIDTNVAKIETAITEIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAIT 1047
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQV++ T V+ T ++ TQV+ T V+ + V+ TQV
Sbjct: 1048 EIQTQVAVIDTNVARIETSITEIETQVAVIDTNVAKIESAVAEIETQV 1095
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 52/108 (48%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
TQV+ T V+ + V+ TQVS V+ T ++ TQV+ T V+ T ++
Sbjct: 785 TQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVAKIETAIT 844
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQVS+ T V+ T + TQV+ T V+ + V+ TQV
Sbjct: 845 EIQTQVSVIDTNVARIETSIIEIQTQVAVIDTNVARIESAVAEIETQV 892
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 54/113 (47%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++ TQV+ T V+ T ++ TQV+ V+ + V+ TQVS T V+
Sbjct: 1046 ITEIQTQVAVIDTNVARIETSITEIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKI 1105
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
T ++ TQV++ T V+ T ++ TQV+ T V+ T + TQV
Sbjct: 1106 ETAITEIQTQVAVIDTNVAKIETAITEIQTQVAVIDTNVARIETSIIEIQTQV 1158
Score = 38.1 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 53/114 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+ TQVS T V+ T ++ TQV+ V+ T ++ TQV+ T V+
Sbjct: 1088 VAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVAKIETAITEIQTQVAVIDTNVARI 1147
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
T + TQV++ T V+ + V+ TQVS T VS T V T V+
Sbjct: 1148 ETSIIEIQTQVAVIDTNVARIESAVAEIETQVSVIDTNVSVIETIVGRIETSVV 1201
Score = 38.1 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 49/109 (44%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T V+ + V+ TQVS T V+ V T V TQVS T V+ + VS
Sbjct: 1233 TNVARIESAVAEIETQVSVIDTNVAVIETIVGRIETSVVEIQTQVSVIDTNVARIESAVS 1292
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
TQ+S+ T VS+ T V T V TQVS T V+ T +I
Sbjct: 1293 EVETQISVIDTNVSVIETIVGRIETSVVEIQTQVSVIDTNVARIETSII 1341
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 55/114 (48%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+++ TQV+ T V+ + V+ TQVS V+ T ++ TQV+ T V+
Sbjct: 1066 SITEIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVAK 1125
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
T ++ TQV++ T V+ T + TQV+ T V+ + V+ TQV
Sbjct: 1126 IETAITEIQTQVAVIDTNVARIETSIIEIQTQVAVIDTNVARIESAVAEIETQV 1179
Score = 37.4 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 52/113 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS T VS T V T V TQV+ V+ T ++ TQV+ T V+
Sbjct: 738 VSVIDTNVSVIETIVGRIETSVVEIQTQVAVIDTNVAKIETAITEIETQVAVIDTNVAKI 797
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+ TQVS+ T V+ T ++ TQV+ T V+ T ++ TQV
Sbjct: 798 ESAVAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVAKIETAITEIQTQV 850
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 53/114 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
++ TQV+ T V+ T ++ TQV+ V+ T + TQV+ T V+
Sbjct: 1109 ITEIQTQVAVIDTNVAKIETAITEIQTQVAVIDTNVARIETSIIEIQTQVAVIDTNVARI 1168
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ V+ TQVS+ T VS+ T V T V TQV+ T V+ T +I
Sbjct: 1169 ESAVAEIETQVSVIDTNVSVIETIVGRIETSVVEIQTQVAVIDTNVARIETSII 1222
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 50/108 (46%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T V+ + V+ TQVS T VS V T V TQV+ T V+ T ++
Sbjct: 722 TNVARIESAVAEIETQVSVIDTNVSVIETIVGRIETSVVEIQTQVAVIDTNVAKIETAIT 781
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQV++ T V+ + V+ TQVS T V+ T ++ TQV
Sbjct: 782 EIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAITEIQTQV 829
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 50/108 (46%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T V+ + V+ TQVS T VS V T V TQV+ T V+ T ++
Sbjct: 946 TNVARIESAVAEIETQVSVIDTNVSVIETIVGRIETSVVEIQTQVAVIDTNVAKIETAIT 1005
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQV++ T V+ + V+ TQVS T V+ T ++ TQV
Sbjct: 1006 EIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVAKIETAITEIQTQV 1053
Score = 37.0 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 52/113 (46%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS T VS T V T V TQV+ V+ T ++ TQV+ T V+
Sbjct: 962 VSVIDTNVSVIETIVGRIETSVVEIQTQVAVIDTNVAKIETAITEIETQVAVIDTNVAKI 1021
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ V+ TQVS+ T V+ T ++ TQV+ T V+ T ++ TQV
Sbjct: 1022 ESAVAEIETQVSVIDTNVAKIETAITEIQTQVAVIDTNVARIETSITEIETQV 1074
Score = 36.6 bits (83), Expect = 7.1, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 51/109 (46%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T V TQV+ T V+ T ++ V+ T V+ + V+ TQVS T V+
Sbjct: 757 TSVVEIQTQVAVIDTNVAKIETAITEIETQVAVIDTNVAKIESAVAEIETQVSVIDTNVA 816
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
T ++ TQV++ T V+ T ++ TQVS T V+ T +I
Sbjct: 817 KIETAITEIQTQVAVIDTNVAKIETAITEIQTQVSVIDTNVARIETSII 865
Score = 36.6 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 50/114 (43%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS T VS T V T V TQVS V+ T + TQV+ T V+
Sbjct: 388 VSVIDTNVSVIETIVGRIETSVVEIQTQVSVIDTNVARIETSIIEIQTQVAVIDTNVARI 447
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ V+ TQVS+ T VS+ T V T V TQVS T V+ T +I
Sbjct: 448 ESAVAEIETQVSVIDTNVSVIETIVGRIETSVVEIQTQVSVIDTNVARIETSII 501
Score = 36.6 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 50/114 (43%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
VS T VS T V T V TQVS V+ T + TQV+ T V+
Sbjct: 598 VSVIDTNVSVIETIVGRIETSVVEIQTQVSVIDTNVARIETSIIEIQTQVAVIDTNVARI 657
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ V+ TQVS+ T VS+ T V T V TQVS T V+ T +I
Sbjct: 658 ESAVAEIETQVSVIDTNVSVIETIVGRIETSVVEIQTQVSVIDTNVARIETSII 711
>gi|17542068|ref|NP_502283.1| Protein SPT-5 [Caenorhabditis elegans]
gi|74965276|sp|Q21338.3|SPT5H_CAEEL RecName: Full=Transcription elongation factor SPT5; AltName:
Full=DRB sensitivity-inducing factor large subunit;
Short=DSIF large subunit
gi|3878373|emb|CAA92685.1| Protein SPT-5 [Caenorhabditis elegans]
Length = 1208
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYT-QVSPAYIP--VSPAYTPVSPAYTQVSPAYTQVS 115
+P Y +P Y +P Y ++PAY +PAY +PAY +PAY + + +
Sbjct: 808 TPMYGSKTPMYGAQTPMYGSMTPAYDGGRTPAYGEGGRTPAYGSKTPAYGDLDEHSSSRT 867
Query: 116 PAYTQVS---PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
PAY S PAY A T PAY T PAY + ++ T
Sbjct: 868 PAYGNDSSRTPAYGSADGART----------PAYGSTEGGRT---PAYGSMDNSRT---- 910
Query: 173 NKIRPGRESNSRSSAYEAF 191
P + + R+ YE+
Sbjct: 911 ----PAYDDSGRTPGYESM 925
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 40.4 bits (93), Expect = 0.48, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
Y P SP SP+Y+ SP Y+ SP Y+ S Y+ S + Y+ SP+Y+ +
Sbjct: 1578 YAPNSPG--GASPSYSPTSPCYSPPSPQYSPGSSNYSPSSPNIHPATQKYSPTSPSYSPM 1635
Query: 157 SPAYTQVSSAY 167
SP + +S Y
Sbjct: 1636 SPMHPTSASNY 1646
Score = 39.3 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQ----VSPA---YIPVSPAYTPVSPAYTQVSPAY 111
SP+Y+ SP Y+ SP Y+ S Y+ + PA Y P SP+Y+P+SP + + Y
Sbjct: 1587 SPSYSPTSPCYSPPSPQYSPGSSNYSPSSPNIHPATQKYSPTSPSYSPMSPMHPTSASNY 1646
Query: 112 TQVSPA 117
SPA
Sbjct: 1647 A--SPA 1650
Score = 37.7 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP SP+Y+ SP Y+ SP Y+ S Y+ S + Y+ SP+Y+ +
Sbjct: 1578 YAPNSPG--GASPSYSPTSPCYSPPSPQYSPGSSNYSPSSPNIHPATQKYSPTSPSYSPM 1635
Query: 150 SPAYTQVSPAY 160
SP + + Y
Sbjct: 1636 SPMHPTSASNY 1646
>gi|432901120|ref|XP_004076814.1| PREDICTED: zinc finger protein 346-like [Oryzias latipes]
Length = 440
Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
+DE T +PA + +PA + +PA + +PA Y P TP YT P
Sbjct: 279 DDEYTPAEYTPADDEYTPADDEYTPADDEYTPA----DDEYTPADDKCTPADDEYT---P 331
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA---YTQVSPAYTQVSSA 166
A + +PA + A Q A Q S A + +PA + +PA YT YT
Sbjct: 332 ADDKYTPADDHNTTADDQYKPAGDQYSFAVDRYTPADDRYTPADDHYTLGDDKYTAAGGQ 391
Query: 167 YTQVI 171
YT +
Sbjct: 392 YTSTV 396
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 3/112 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPAYTQVS 115
+PA + +PA + +PA + +PA + +PA Y P YTP T Y
Sbjct: 295 TPADDEYTPADDEYTPADDEYTPADDKCTPADDEYTPADDKYTPADDHNTTADDQYKPAG 354
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
Y+ YT YT YT YT YT YT Y
Sbjct: 355 DQYSFAVDRYTPADDRYTPADDHYTLGDDKYTAAGGQYTSTVDRYTPADDQY 406
>gi|383864921|ref|XP_003707926.1| PREDICTED: uncharacterized protein LOC100880584 [Megachile
rotundata]
Length = 996
Score = 40.4 bits (93), Expect = 0.49, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T +SP+ +SP P SP Q SP +Q SP SP T + T S ++S
Sbjct: 472 TPLSPSVSQLSPHLNPSSPHLNQNSPHLSQTSPQLNTHSPHATSMESPNTPNSQQLNRIS 531
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
P SP T SP Y V++ Q++
Sbjct: 532 PLN---SPHQTN-SPTYNAVANTGQQIL 555
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1558 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1593
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1558 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1593
>gi|220908339|ref|YP_002483650.1| hypothetical protein Cyan7425_2949 [Cyanothece sp. PCC 7425]
gi|219864950|gb|ACL45289.1| hypothetical protein Cyan7425_2949 [Cyanothece sp. PCC 7425]
Length = 103
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
TQ+S + TQVS TQ+S + TQ+S TQVS TQ+S + TQVS TQ+S
Sbjct: 13 TQMSFSTTQVSVLTTQMSFSTTQMSFLTTQVSALTTQMSFSTTQVSVLTTQMS 65
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS 157
TQ+S + TQVS TQ+S + TQ+S TQVS TQ+S + TQVS TQ+S
Sbjct: 13 TQMSFSTTQVSVLTTQMSFSTTQMSFLTTQVSALTTQMSFSTTQVSVLTTQMS 65
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1578 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1613
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1578 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1613
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1557 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1592
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1557 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1592
>gi|449271938|gb|EMC82111.1| hypothetical protein A306_09953, partial [Columba livia]
Length = 113
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 54 TVYTVSPAYTQVSPAYTQVS----------PAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
V +VSP +VSP Y QVS P Q SP VSP +SP +PV P
Sbjct: 2 CVPSVSPGVPKVSPMYPQVSQCVPWCPQGVPPCPQASPGVPTVSP----MSPQGSPVCPL 57
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQ-VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ + +SPA VSP Q V + +VSP+ + VSPA VSP
Sbjct: 58 VSS---SVPNMSPAVPPVSPMCPQCVPKVSPRCPQGVLRVSPSVSNVSPAVPPVSP 110
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 72 VSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA 131
VSP +VSP Y QVS +P P P P Q SP VSP Q SP VS +
Sbjct: 6 VSPGVPKVSPMYPQVS-QCVPWCPQGVPPCP---QASPGVPTVSPMSPQGSPVCPLVSSS 61
Query: 132 YTQVSLAYTQVSPAYTQ----VSPAYTQ----VSPAYTQVSSAYTQV 170
+S A VSP Q VSP Q VSP+ + VS A V
Sbjct: 62 VPNMSPAVPPVSPMCPQCVPKVSPRCPQGVLRVSPSVSNVSPAVPPV 108
>gi|260786234|ref|XP_002588163.1| hypothetical protein BRAFLDRAFT_68801 [Branchiostoma floridae]
gi|229273322|gb|EEN44174.1| hypothetical protein BRAFLDRAFT_68801 [Branchiostoma floridae]
Length = 4468
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 47 STDEDEATVYTVSPAYTQVSPAYTQVSPAYT-QVSPAYTQVSPAYI-PVSPAYTPVSP-A 103
ST ED++ ++ Q+ PA VSPA Q+ PA VSPA + + PA VSP A
Sbjct: 2854 STSEDDSVSGGMTTLMYQIPPARMTVSPAVMYQIPPARMTVSPAVMYQIPPARMTVSPTA 2913
Query: 104 YTQVSPAYTQVSP-AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
Q+ PA VSP A Q+ P VS A A Q+ PA VSPA
Sbjct: 2914 MYQIPPARMTVSPTAMYQIPPVRMTVSPA------AMYQIPPARMTVSPA 2957
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1552 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1587
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1552 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1587
>gi|331238488|ref|XP_003331899.1| hypothetical protein PGTG_13708 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 515
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 48/76 (63%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
YT + YT+ + YT+++ T+++ YT+++ T+++ YT+++ +T+++ YT++
Sbjct: 145 YTALETDYTKPATEYTELATELTELATDYTELATDCTELATDYTELATDHTELATDYTEL 204
Query: 157 SPAYTQVSSAYTQVIL 172
+T+ + YT++ +
Sbjct: 205 VTDHTEPEANYTELTI 220
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 73 SPAYTQVSPAYTQVSPA--YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
SP +Q+ P Y + YT + YT+++ T+++ YT+++ T+++
Sbjct: 126 SPVICNTPHPLSQLEPQTDYTALETDYTKPATEYTELATELTELATDYTELATDCTELAT 185
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
YT+++ +T+++ YT++ +T+ YT+++ A T+
Sbjct: 186 DYTELATDHTELATDYTELVTDHTEPEANYTELTIADTE 224
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 49/82 (59%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT + YT+ + YT+++ T+++ Y ++ T ++ YT+++ +T+++ YT++
Sbjct: 145 YTALETDYTKPATEYTELATELTELATDYTELATDCTELATDYTELATDHTELATDYTEL 204
Query: 122 SPAYTQVSLAYTQVSLAYTQVS 143
+T+ YT++++A T+ S
Sbjct: 205 VTDHTEPEANYTELTIADTEKS 226
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 48/79 (60%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT+ + YT+++ T+++ YT+++ ++ YT ++ +T+++ YT++ +T+
Sbjct: 152 YTKPATEYTELATELTELATDYTELATDCTELATDYTELATDHTELATDYTELVTDHTEP 211
Query: 122 SPAYTQVSLAYTQVSLAYT 140
YT++++A T+ S+ T
Sbjct: 212 EANYTELTIADTEKSIDVT 230
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 63 TQVSPA--YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
+Q+ P YT + YT+ + YT+++ ++ YT ++ T+++ YT+++ +T+
Sbjct: 137 SQLEPQTDYTALETDYTKPATEYTELATELTELATDYTELATDCTELATDYTELATDHTE 196
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
++ YT++ +T+ YT+++ A T+ S
Sbjct: 197 LATDYTELVTDHTEPEANYTELTIADTEKS 226
>gi|322418834|ref|YP_004198057.1| hypothetical protein GM18_1313 [Geobacter sp. M18]
gi|320125221|gb|ADW12781.1| hypothetical protein GM18_1313 [Geobacter sp. M18]
Length = 113
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 37/109 (33%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT + YT V YT V V YI V Y Y V +Y +Y V
Sbjct: 2 YTAIDNLYTAVDNLYTAVDNLCIAVCNLYIVVYNLYIATYNLYISVYNSYITADNSYITV 61
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y V Y V Y V Y V +Y V Y V + Y +
Sbjct: 62 DNLYITVDNLYIAVYNLYIAVYNLYIAVYNSYIAVDDLYIAVGNTYIAI 110
>gi|116309801|emb|CAH66840.1| H0525C06.3 [Oryza sativa Indica Group]
Length = 350
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 56/153 (36%), Gaps = 17/153 (11%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
D A SP+ SP Y+ +P SP Y+ +P SP YTP +P SP
Sbjct: 160 DHAPSPPWSPSRRAASPDYSPSTPPRRAASPDYSPSTPPRRAASPDYTPSTPWRRAASPD 219
Query: 111 Y---TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSP--------------AYTQVSPAY 153
Y T SP SP Y+ + S YT +P SP Y
Sbjct: 220 YAPSTPWSPPRRASSPDYSPSTPPRRAASPNYTPSTPPRRAASPDYSPSSPPRRAASPEY 279
Query: 154 TQVSPAYTQVSSAYTQVILNKIRPGRESNSRSS 186
TQ+SP S Y ++ SR+S
Sbjct: 280 TQLSPPRRAASPDYNPSTPPPSPVPSDAGSRTS 312
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP----------VSPAYTPVSPAYTQV 107
SP YT +P SP YT +P SP + P SP Y+P +P
Sbjct: 129 ASPEYTPSTPWRRAASPDYTPSTPWRRAASPDHAPSPPWSPSRRAASPDYSPSTPPRRAA 188
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY---TQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ +P SP YT + S Y T SP SP Y+ +P S
Sbjct: 189 SPDYSPSTPPRRAASPDYTPSTPWRRAASPDYAPSTPWSPPRRASSPDYSPSTPPRRAAS 248
Query: 165 SAYT 168
YT
Sbjct: 249 PNYT 252
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV---SPAYTQVSPAYTQVSPAYT 119
T SP YT +P SP YT +P SP + P SP+ SP Y+ +P
Sbjct: 127 TAASPEYTPSTPWRRAASPDYTPSTPWRRAASPDHAPSPPWSPSRRAASPDYSPSTPPRR 186
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
SP Y+ + S YT +P SP Y +P
Sbjct: 187 AASPDYSPSTPPRRAASPDYTPSTPWRRAASPDYAPSTP 225
>gi|291228641|ref|XP_002734288.1| PREDICTED: ATP-binding cassette, sub-family E, member 1-like
[Saccoglossus kowalevskii]
Length = 488
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
A +++S A +++S A +++S A +S A + +S A S A +++S A +++S A ++
Sbjct: 359 ATSELSLATSELSLATSELSLATSELSLATSELSLA---TSEATSELSLATSELSLATSE 415
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+SLA +++SLA +++ A +++S A +++S A
Sbjct: 416 LSLATSELSLATSELLLATSELSLATSELSLA 447
>gi|299751638|ref|XP_002911665.1| hydroxyproline-rich glycoprotein VSP-3 [Coprinopsis cinerea
okayama7#130]
gi|298409466|gb|EFI28171.1| hydroxyproline-rich glycoprotein VSP-3 [Coprinopsis cinerea
okayama7#130]
Length = 583
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
+++ SPA + V + +++PA + V A+ P SPA + V + Q +PA + V + Q
Sbjct: 375 HSERSPAPSAVHSVHPEMTPAPSVVRSAH-PESPAMSAVRSVHPQATPAMSAVRSIHPQA 433
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+PA + V A+ Q + A + V + Q +PA + + + Q + A + +
Sbjct: 434 TPAMSTVRSAHPQATPATSAVRSIHPQATPAMSAMHSVHPQATPAMSAAL 483
>gi|291222542|ref|XP_002731275.1| PREDICTED: cyclic nucleotide gated channel beta 1-like
[Saccoglossus kowalevskii]
Length = 925
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 3/115 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP---AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
+P Y + Y +P Y +P A QV A PV A PV A V V
Sbjct: 6 NPVYAANNLVYAANNPVYAANNPVDAANNQVYAANNPVDAATNPVYAANNPVDAGNNTVD 65
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
A Q+ Q+ Q+ QV A Q+ QV A QV + Q+
Sbjct: 66 VANNQLDAENNQLDAENNQLDAENNQVDVANNQLDAENNQVDVANNQVDAENNQL 120
>gi|301619241|ref|XP_002939006.1| PREDICTED: uncharacterized protein C17orf97-like [Xenopus
(Silurana) tropicalis]
Length = 395
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 35/152 (23%)
Query: 52 EATVYTVSPAYTQVSP---AYTQV---SPAYTQVSP---AYTQVSPAYIPVSPAYT---P 99
+ +Y +P TQ+ P YTQ+ P Y+Q+ P YTQ+ P + YT P
Sbjct: 108 DTQIYPDAPTDTQIHPHTVRYTQMHPDKPRYSQIHPDTLRYTQIHPDTL----RYTQMHP 163
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV---SLAYTQV---SPAYTQV---S 150
+P YTQ+ P +P TQ+ +L TQ+ + YTQ+ +P YTQ+ +
Sbjct: 164 DTPRYTQIHPH----TPRSTQIHRQMHPDALRCTQIHPDTPRYTQMHPDTPRYTQIHSDT 219
Query: 151 PAYTQV---SPAYTQV---SSAYTQVILNKIR 176
P TQ+ +P YTQ+ + YTQ+ + R
Sbjct: 220 PRCTQIHSDTPRYTQMHPDTPRYTQIHPDTTR 251
Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 47/160 (29%)
Query: 55 VYTVSPAYTQV---SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV---- 107
++ +P TQ+ +P TQ+ P +P YT++ P P+ P +P YTQ+
Sbjct: 41 MHPQAPRCTQIHRQTPRSTQIHPQ----APRYTEIHPD-APIGTQIHPDTPRYTQIYPDA 95
Query: 108 -------------------SPAYTQVSP---AYTQV---SPAYTQV---SLAYTQV---S 136
+P TQ+ P YTQ+ P Y+Q+ +L YTQ+ +
Sbjct: 96 PTDTQIYPDAPTDTQIYPDAPTDTQIHPHTVRYTQMHPDKPRYSQIHPDTLRYTQIHPDT 155
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
L YTQ+ P +P YTQ+ P + + + Q+ + +R
Sbjct: 156 LRYTQMHPD----TPRYTQIHPHTPRSTQIHRQMHPDALR 191
>gi|260785411|ref|XP_002587755.1| hypothetical protein BRAFLDRAFT_94659 [Branchiostoma floridae]
gi|229272907|gb|EEN43766.1| hypothetical protein BRAFLDRAFT_94659 [Branchiostoma floridae]
Length = 429
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 43/59 (72%)
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
++ ++ + T++ L+YT+V L+YT++ +YT++ +YT++ +YT++ +YT++ L+ I
Sbjct: 369 SFVRIYLSSTRIYLSYTRVHLSYTRIYLSYTRIYLSYTRIYLSYTRIYLSYTRIYLSSI 427
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 44/65 (67%)
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P S + + ++ ++ + T++ +YT+V L+YT++ L+YT++ +YT++ +YT++
Sbjct: 358 PSSMSRLHLHLSFVRIYLSSTRIYLSYTRVHLSYTRIYLSYTRIYLSYTRIYLSYTRIYL 417
Query: 159 AYTQV 163
+YT++
Sbjct: 418 SYTRI 422
>gi|118353953|ref|XP_001010241.1| hypothetical protein TTHERM_01050420 [Tetrahymena thermophila]
gi|89292008|gb|EAR89996.1| hypothetical protein TTHERM_01050420 [Tetrahymena thermophila SB210]
Length = 1544
Score = 40.0 bits (92), Expect = 0.69, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT-QVSP 158
+SP +Q+SP SP +QVSP Q L Q+ ++ Q SP Q SP QVSP
Sbjct: 992 ISPRNSQISPRNNFQSPKISQVSPKNNQNHLINNQIPISAAQKSPKNQQFSPKQQLQVSP 1051
Query: 159 AYTQ 162
Q
Sbjct: 1052 KNFQ 1055
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 40.0 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 19/108 (17%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSP-AYTQV--SPAYIPV-SPAYTPVSPAYTQVSPAYTQV 114
+PAY SP + ++P SP A ++V SPAY P SPA +P SP+ SPAY
Sbjct: 1519 TPAYGMWSPT-SNMTPGAAGFSPSAQSEVGFSPAYSPAYSPAQSPGSPS----SPAY--Y 1571
Query: 115 SPAYTQ-VSPAYT-QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
SP + SP+Y+ Q++ S ++ SP+Y+ SP Y
Sbjct: 1572 SPLHVGGSSPSYSPQITSPSYSPSSPSYNLA------SPSYSPTSPQY 1613
>gi|255714426|ref|XP_002553495.1| KLTH0D18194p [Lachancea thermotolerans]
gi|238934875|emb|CAR23057.1| KLTH0D18194p [Lachancea thermotolerans CBS 6340]
Length = 1222
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+PA ++ +PA ++ +PA T +PA + PA +PA + PA ++ +PA + PA
Sbjct: 626 TTPATSETTPATSETTPA-TSGTPATSGSVPATSETTPATSGSVPATSETTPATSGSVPA 684
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVS-PAYTQVSPAYTQVSPAYTQVSSA 166
++ +PA T S+ T S+ T S PA ++ +PA ++ +PA ++ + A
Sbjct: 685 TSETTPA-TSGSVPATSGSVPATSGSVPATSETTPATSETTPATSETTPA 733
Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
+PA ++ +PA ++ +PA T +PA + PA +PA + PA ++ +PA + PA
Sbjct: 716 TTPATSETTPATSETTPA-TSGTPATSGSVPATSETTPATSGSVPATSETTPATSGSVPA 774
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
++ +PA + A ++ +LA ++ +PA
Sbjct: 775 TSETTPATSGSVPATSETTLATSETTPA 802
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA ++ PA + +PA ++ +PA T +PA PA + PA ++ +PA ++ +PA +
Sbjct: 580 PATSETIPATSGSAPATSETTPA-TSGTPATSGSVPATSETIPATSETTPATSETTPATS 638
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ +PA T + A + A ++ +PA + PA ++ +PA
Sbjct: 639 ETTPA-TSGTPATSGSVPATSETTPATSGSVPATSETTPA 677
>gi|156361856|ref|XP_001625500.1| predicted protein [Nematostella vectensis]
gi|156212336|gb|EDO33400.1| predicted protein [Nematostella vectensis]
Length = 261
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 102 PAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
P +VSP T+VSP + SP +V ++S+ T+VSP T VS +S
Sbjct: 159 PKEIEVSPKVTKVSPKQIETSPKEAEVLSKENEISMEETEVSPEETGVSQTKNGISQIEA 218
Query: 162 QVSS 165
+V
Sbjct: 219 EVQE 222
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 71 QVSPAYTQVSPAYTQVSPAYIPVS------------PAYTPVSPAYTQVSPAYTQVSPAY 118
QVS A Q P T+ P I P VSP T+VSP + SP
Sbjct: 125 QVSKAENQ--PMETETRPELIATEGTGIIREDAEGLPKEIEVSPKVTKVSPKQIETSPKE 182
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRP 177
+V ++S+ T+VS T VS +S +V S +++ ++ P
Sbjct: 183 AEVLSKENEISMEETEVSPEETGVSQTKNGISQIEAEVQEKEIYFPSKAIEILAKEVEP 241
>gi|18734|emb|CAA36734.1| DNA-directed RNA polymerase [Glycine max]
Length = 494
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 230 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 265
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 82 AYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
Y+ SP Y P SP Y+P SP Y+ SP Y+ SPA
Sbjct: 230 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 265
>gi|195452558|ref|XP_002073406.1| GK13167 [Drosophila willistoni]
gi|194169491|gb|EDW84392.1| GK13167 [Drosophila willistoni]
Length = 528
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
SY+++ +F+R D +D S DEDE VY +S + A + + VS A +V
Sbjct: 37 SYVVVSRFRRSDRDDLYSNDEDEVLVYRISFWLCTFTLAVAEGAAMLLPVSIASNEVLLL 96
Query: 90 Y 90
Y
Sbjct: 97 Y 97
>gi|449265607|gb|EMC76775.1| hypothetical protein A306_16126, partial [Columba livia]
Length = 248
Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 40 KDLEDYLSTDEDEATVYTVSPAY---TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA 96
K +++ T ++ +SP + TQ P T SP T +P TQ SP
Sbjct: 67 KSTQNHPKTPQNTQKHPKISPKHPEFTQNQPKITPKSPQDTPKTPQITQNSPK------- 119
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV------S 150
++P + +++P + ++ P Q +P Q++ + + + +++P + + +
Sbjct: 120 ---ITPKHPKITPKHPKIHPKSPQNTPNTPQITQKHPKTPKNHPKITPKHPKTPQNHPET 176
Query: 151 PAYTQVSPA 159
P TQ SP
Sbjct: 177 PQNTQKSPP 185
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 43 EDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV---SPAYIPVSPAYTP 99
+ + T + + P ++ P Q P TQ P Q+ SP P P YTP
Sbjct: 4 QKHPKTPQKHPKSPKIHPKSPKIHPKSPQNHPKITQKHPKTPQIHPKSPRNNPKHPKYTP 63
Query: 100 V----------SPAYTQVSPAYTQVSPAYTQVSPAYT-----------QVSLAYTQVSLA 138
+P TQ P + P +TQ P T Q++ +++
Sbjct: 64 KHTKSTQNHPKTPQNTQKHPKISPKHPEFTQNQPKITPKSPQDTPKTPQITQNSPKITPK 123
Query: 139 YTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
+ +++P + ++ P Q +P Q++ + + N
Sbjct: 124 HPKITPKHPKIHPKSPQNTPNTPQITQKHPKTPKN 158
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
+P TQ P + P +TQ P P SP TP +P TQ SP ++P + +++P +
Sbjct: 75 TPQNTQKHPKISPKHPEFTQNQPKITPKSPQDTPKTPQITQNSPK---ITPKHPKITPKH 131
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILN 173
++ Q + Q++ + + + +++P + + + + N
Sbjct: 132 PKIHPKSPQNTPNTPQITQKHPKTPKNHPKITPKHPKTPQNHPETPQN 179
>gi|406864781|gb|EKD17825.1| CRE-PPGN-1 protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 651
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 44/70 (62%)
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
++V+ TQ++ A TQ+ +Q++ TQ + +Q+S +++++ A +Q++ +Q+S
Sbjct: 306 SEVTSTTTQLASAQTQLITTKSQLASTQTQHATTKSQLSAIHSELNSAKSQLATTQSQLS 365
Query: 165 SAYTQVILNK 174
SA TQ+I K
Sbjct: 366 SAQTQLIATK 375
>gi|307101692|gb|ADN32811.1| sieve element occlusion b [Solanum phureja]
Length = 823
Score = 39.7 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
+ T + ++P Q++P TQ++P Q++P TQ++P ++P ++ V P + PA
Sbjct: 39 NPTTGHHINPLNAQINPLNTQINPLNAQINPLNTQINPLNAQINP-HSVVKPVSHDMIPA 97
Query: 111 YTQVSPAYTQVSPAYTQVS 129
V PA +P + S
Sbjct: 98 --SVVPAAHHTTPINPRTS 114
>gi|384252609|gb|EIE26085.1| hypothetical protein COCSUDRAFT_32478 [Coccomyxa subellipsoidea
C-169]
Length = 235
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%)
Query: 45 YLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAY 104
YL +E +PA S A +P + +PA VS I ++P+ ++P
Sbjct: 112 YLMEQFEELVAGLENPAAIAGSGAVFSYAPCFVNFAPAAVGVSATGISIAPSLAVITPEG 171
Query: 105 TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+ P + P + P V ++ A V+P ++P + PA VS
Sbjct: 172 VNIQPQGLNIQPVLITIFPVGVNVQPQGLNIAPALIAVTPGRVSINPQGGTIGPALISVS 231
Query: 165 S 165
+
Sbjct: 232 A 232
>gi|291234756|ref|XP_002737313.1| PREDICTED: limb region 1 like [Saccoglossus kowalevskii]
Length = 502
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 18 IFLLVFLLLNVLSYILIEKFKRK-DLEDYLSTDEDEATVYTVS 59
I+ L+F + VLSYI+I KFKR+ + EDY + D+++A VY ++
Sbjct: 21 IYWLLFATMYVLSYIIICKFKRRTEKEDYYTNDDEDAMVYRIA 63
>gi|156370382|ref|XP_001628449.1| predicted protein [Nematostella vectensis]
gi|156215426|gb|EDO36386.1| predicted protein [Nematostella vectensis]
Length = 385
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 32/141 (22%)
Query: 60 PAYTQVSPAYTQVSPAYTQVS-----PAYTQVSPAYIPV---------SPAYTPVSPAYT 105
P +TQVS YT ++P YT + P +TQVS Y + + YTP + YT
Sbjct: 188 PHHTQVSTPYTAINP-YTGIHTIHRYPHHTQVSTPYTGIHTIHSYPHHTQLYTPYTDIYT 246
Query: 106 -QVSPAYTQVSPAYTQVSPAYTQVSL-----AYTQVSLAYTQVS-----PAYTQVSPAYT 154
P + Q S +TQVS YT + +TQ+S YT + P +TQVS YT
Sbjct: 247 IHNHPHHPQQS-THTQVSTTYTAIHTIHSYPHHTQLSTPYTGIHTIHRYPHHTQVSTPYT 305
Query: 155 QVS-----PAYTQVSSAYTQV 170
+ P +TQ+ ++YT +
Sbjct: 306 AIHTIHSYPHHTQLYTSYTGI 326
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii VEG]
Length = 1892
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY--IPVSPAYTPVSPAYTQVSPAYTQVSP 116
SP+ +SP ++ S +Y+ SP Q +P P SPAY+P SP Y+ SP Y+
Sbjct: 1724 SPSNNPMSPHFS-ASTSYSPTSPV-QQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFA 1781
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ SP+Y +SP++T SP Y+ SPA
Sbjct: 1782 PYSPQSPSY----------GAGQGPLSPSFTVQSPRYSPSSPA 1814
>gi|109128937|ref|XP_001088339.1| PREDICTED: protein FAM65A-like [Macaca mulatta]
Length = 1128
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY-TQV 121
T P + P T S +T SP + P SP + T +SP +T SP + T++
Sbjct: 499 TTTGPTVNIIGPVQTTTSHTHTMPSPTHTPTSPTHKTRMSTSTTISPTHTPTSPTHKTRM 558
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP T S + + L T SP T VSP+ SP +SS
Sbjct: 559 SPPTT-TSPNPSAMGLVQTATSPTLTNVSPS---TSPELATLSS 598
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY- 111
+T+ T P + P T S +T SP +T SP + T +SP +T SP +
Sbjct: 496 STLTTTGPTVNIIGPVQTTTSHTHTMPSPTHTPTSPTHKTRMSTSTTISPTHTPTSPTHK 555
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
T++SP T SP + + L T S T VSP+
Sbjct: 556 TRMSPPTT-TSPNPSAMGLVQTATSPTLTNVSPS 588
>gi|384252605|gb|EIE26081.1| hypothetical protein COCSUDRAFT_46483 [Coccomyxa subellipsoidea
C-169]
Length = 941
Score = 39.7 bits (91), Expect = 1.00, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V P + P + ++P V P +SP I + P T V+ ++PA ++P
Sbjct: 857 VFPQGINIQPEFFNIAPTGVNVQPQGLSISPNLIVIGPYDTTVAGQGLNIAPALIAIAPV 916
Query: 118 YTQVSPAYTQVSLAYTQVSLA 138
T V+P +++A T VS+A
Sbjct: 917 KTVVNPV-GPLAIADTLVSVA 936
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 26/94 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV------------------ 100
+P+ + SP++ SP+ ++SP Y+Q SP+Y P SP Y+P
Sbjct: 1747 NPSSAKYSPSHA-YSPSSPRMSP-YSQTSPSYSPTSPTYSPTSPSYSQPSPSYSPTSPFN 1804
Query: 101 -----SPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
SP Y+ SP Y+ S +Y+ +P Y+ S
Sbjct: 1805 TSGGPSPDYSPTSPNYSP-SGSYSPTAPGYSPSS 1837
Score = 36.2 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 19/98 (19%)
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
+P+ + SP++ AY+P SP ++SP Y+Q SP+Y+ SP Y+ S +Y+Q S +Y
Sbjct: 1747 NPSSAKYSPSH-----AYSPSSP---RMSP-YSQTSPSYSPTSPTYSPTSPSYSQPSPSY 1797
Query: 140 TQV---------SPAYTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ SP Y+ S +Y+ + Y+
Sbjct: 1798 SPTSPFNTSGGPSPDYSPTSPNYSP-SGSYSPTAPGYS 1834
>gi|169604987|ref|XP_001795914.1| hypothetical protein SNOG_05509 [Phaeosphaeria nodorum SN15]
gi|160706682|gb|EAT86573.2| hypothetical protein SNOG_05509 [Phaeosphaeria nodorum SN15]
Length = 1180
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 41 DLEDY---LSTDED--EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP 95
D+ DY +++D D E SP Y+ VSP Y+ VSP + SP SP Y+P SP
Sbjct: 994 DMGDYDLSINSDRDILEQDGKVASPQYSPVSPQYSPVSPGSVKYSP----TSPTYVPTSP 1049
Query: 96 AY 97
Y
Sbjct: 1050 GY 1051
>gi|427708019|ref|YP_007050396.1| hypothetical protein Nos7107_2646 [Nostoc sp. PCC 7107]
gi|427360524|gb|AFY43246.1| hypothetical protein Nos7107_2646 [Nostoc sp. PCC 7107]
Length = 89
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y +++ AYT+ Y +++ AYT+ AY ++ A ++ AYT+ Y +++ AY ++
Sbjct: 2 YAEIAIAYTKAINVYAEIAIAYTKAIIAYAEITIAIAEITIAYTKAINVYAEIAMAYAEI 61
Query: 122 SPAYTQVSLAY 132
+ A T+ +AY
Sbjct: 62 TIAITKSIIAY 72
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 45/69 (65%)
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQV 163
Y +++ AYT+ Y +++ AYT+ +AY ++++A +++ AYT+ Y +++ AY ++
Sbjct: 2 YAEIAIAYTKAINVYAEIAIAYTKAIIAYAEITIAIAEITIAYTKAINVYAEIAMAYAEI 61
Query: 164 SSAYTQVIL 172
+ A T+ I+
Sbjct: 62 TIAITKSII 70
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
Y +++ AYT+ Y ++ AYT AY +++ A +++ AYT+ Y ++++AY ++
Sbjct: 2 YAEIAIAYTKAINVYAEIAIAYTKAIIAYAEITIAIAEITIAYTKAINVYAEIAMAYAEI 61
Query: 136 SLAYTQVSPAY 146
++A T+ AY
Sbjct: 62 TIAITKSIIAY 72
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 69 YTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQV 128
Y +++ AYT+ Y +++ AY AY ++ A +++ AYT+ Y +++ AY ++
Sbjct: 2 YAEIAIAYTKAINVYAEIAIAYTKAIIAYAEITIAIAEITIAYTKAINVYAEIAMAYAEI 61
Query: 129 SLAYTQVSLAY 139
++A T+ +AY
Sbjct: 62 TIAITKSIIAY 72
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 44/71 (61%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
Y ++ AYT+ Y +++ AYT+ AY ++++A ++++AYT+ Y +++ AY ++
Sbjct: 2 YAEIAIAYTKAINVYAEIAIAYTKAIIAYAEITIAIAEITIAYTKAINVYAEIAMAYAEI 61
Query: 157 SPAYTQVSSAY 167
+ A T+ AY
Sbjct: 62 TIAITKSIIAY 72
>gi|301109507|ref|XP_002903834.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262096837|gb|EEY54889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 763
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 50 EDEATVYTVSPAYTQ--VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
++E V+ A Q +SPA T+ SP SPA + SPA + SP SP +
Sbjct: 78 QEERMGEEVAEAEKQPPMSPATTR-SPVKVSESPAKVRSSPAKVRSSPGKVRSSPVKARS 136
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SPA Q SP + SPA ++ + SPA + SP
Sbjct: 137 SPAKVQSSPVKARSSPA---------KMRSPFKARSPAKLRSSP 171
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
gondii ME49]
Length = 1892
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY--IPVSPAYTPVSPAYTQVSPAYTQVSP 116
SP+ +SP ++ S +Y+ SP Q +P P SPAY+P SP Y+ SP Y+
Sbjct: 1724 SPSNNPMSPHFS-ASTSYSPTSPV-QQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFA 1781
Query: 117 AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ SP+Y +SP++T SP Y+ SPA
Sbjct: 1782 PYSPQSPSY----------GAGQGPLSPSFTVQSPRYSPSSPA 1814
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 39.3 bits (90), Expect = 1.0, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 98 TPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
TP SP Y+ SP+Y+ SP Y+ SP+Y
Sbjct: 1606 TPTSPGYSPASPSYSPTSPNYSPASPSY 1633
Score = 37.7 bits (86), Expect = 3.1, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAY 97
T SP Y+ SP+Y+ SP Y P SP+Y
Sbjct: 1606 TPTSPGYSPASPSYSPTSPNYSPASPSY 1633
Score = 37.0 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 27/73 (36%)
Query: 65 VSPAYT---QVSPAYTQVSP-----------------------AYTQVSPAYIPVSPAYT 98
+SPAY QV P +SP + T SP Y P SP+Y+
Sbjct: 1562 MSPAYAWSPQV-PLSPSMSPYIPSGSHSPSYSPSSPSFVPTSPSLTPTSPGYSPASPSYS 1620
Query: 99 PVSPAYTQVSPAY 111
P SP Y+ SP+Y
Sbjct: 1621 PTSPNYSPASPSY 1633
>gi|380495547|emb|CCF32312.1| DNA-directed RNA polymerase II subunit RPB1 [Colletotrichum
higginsianum]
Length = 1192
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA-YTQVSPAYTQ 113
SP+Y+ SP Y+ SP P SP+Y P SP ++P SPA Y+ SP++ Q
Sbjct: 1109 SPSYSPASPNYSPASPNLHGAGP----TSPSYSPASPTWSPTSPAQYSPTSPSFQQ 1160
>gi|443713592|gb|ELU06370.1| hypothetical protein CAPTEDRAFT_78420, partial [Capitella teleta]
Length = 100
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T SP + +P + SP +T +P SP +T +P + SP +T +P S
Sbjct: 1 TATSPPFNDTAPHISTTSPPFTDTAPHTNTTSPPFTDTAPYVSTTSPPFTDTAPHINTTS 60
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P +T + + S +T +P + SP +T +P
Sbjct: 61 PPFTDTAPYVSTTSPPFTDTAPHISTTSPPFTDTAP 96
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP + +P + SP +T +P SP + +P + SP +T +P SP
Sbjct: 3 TSPPFNDTAPHISTTSPPFTDTAPHTNTTSPPFTDTAPYVSTTSPPFTDTAPHINTTSPP 62
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
+T +P + S +T + + SP +T +P
Sbjct: 63 FTDTAPYVSTTSPPFTDTAPHISTTSPPFTDTAP 96
Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
T SP + +P + SP + +P SP +T +P + SP +T +P S
Sbjct: 1 TATSPPFNDTAPHISTTSPPFTDTAPHTNTTSPPFTDTAPYVSTTSPPFTDTAPHINTTS 60
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
+T + + SP +T +P + SP +T +
Sbjct: 61 PPFTDTAPYVSTTSPPFTDTAPHISTTSPPFTDTA 95
>gi|345569946|gb|EGX52771.1| hypothetical protein AOL_s00007g107 [Arthrobotrys oligospora ATCC
24927]
Length = 1543
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP---AYTQVSLAYTQVSLAYTQVS 143
SP Y P SP YTP SP+Y SP SP YT P + Q S+A+ Q ++ S
Sbjct: 872 SPVYNPTSPGYTPTSPSYHPTSPPSISKSPPYTGFYPPVRSGVQHSVAFPQ----FSPKS 927
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQV 170
P Y+ SP Y+ SP T ++ Y +
Sbjct: 928 PNYSPASPCYSPTSPVSTPKATPYGEA 954
>gi|423713515|ref|ZP_17687775.1| hypothetical protein ME1_00521, partial [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395422357|gb|EJF88558.1| hypothetical protein ME1_00521, partial [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 474
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V V PA + A +V+PA + A +V+P A V+P + A +V
Sbjct: 3 VKEVVPAAEKAVDAVKEVAPAAEKAVEAVKEVAPTAEKAVDAVKEVAPTAEKAVEAVKEV 62
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+PA + S A +V+ A + + A +V+P + A +V+PA + S A +V
Sbjct: 63 APAAEKASDAVKEVAPAAEKAAEAVKEVAPTVEKAVDAVKEVAPAAEKASDAVKEV 118
>gi|296167095|ref|ZP_06849505.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897537|gb|EFG77133.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 592
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPA--YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
TQ+ A T+ P V A+ PV A VS TQV PA T+V P + +P +
Sbjct: 248 TQIIAAITESEPV---VEEAHAPVDAAGDLGAVSLEETQVIPAITEVEPVVGETAPPQDE 304
Query: 128 VSLA-----YTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAYTQVILNK 174
A VSL TQV PA T+V P + P + Q S + ++
Sbjct: 305 APPAAQPEPVAAVSLEETQVIPAITEVEPVVDEPAAAGPGWGQDDSGRHHAVADE 359
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1634 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1693
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1694 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1740
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1741 PRTPGPGNAGNQYS 1754
>gi|324506264|gb|ADY42679.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 492
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 28/138 (20%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQV---SPA-----------YIPVSPAYTPVSPA 103
SP ++ +SP+Y SP Y SP T SP Y P S +P+SP
Sbjct: 177 TSPGFSPISPSYLPSSPDYAATSPMVTPSAGYSPKSLSHSPMSLVYYNPSSSGCSPISPN 236
Query: 104 YTQVSPAYTQ--------------VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y+ SP+Y+ +SP+ SP+Y S +Y+ S +Y SP Y+
Sbjct: 237 YSPRSPSYSPLSPAYSPSSPSYNPLSPSCNLTSPSYDPASPSYSPTSPSYNPTSPNYSPT 296
Query: 150 SPAYTQVSPAYTQVSSAY 167
SP Y+ SP Y S Y
Sbjct: 297 SPIYSPTSPGYEPTSPRY 314
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 26/94 (27%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV------------------ 100
+P+ + SP++ SP+ +++P Y+Q SP+Y P SP Y+P
Sbjct: 1754 NPSSAKYSPSHA-YSPSSPRMTP-YSQTSPSYSPTSPTYSPTSPSYSQPSPSYSPTSPFN 1811
Query: 101 -----SPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
SP Y+ SP Y+ S +Y+ +P Y+ S
Sbjct: 1812 TSGGPSPDYSPTSPNYSP-SGSYSPTAPGYSPSS 1844
>gi|348675351|gb|EGZ15169.1| hypothetical protein PHYSODRAFT_391791 [Phytophthora sojae]
Length = 171
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY---IPVSPAYTPVSPAYTQVSPAYTQVS 115
+ Y ++ YT ++ Y+ + T + Y + +T ++ YT + T +
Sbjct: 53 TRGYAAITRGYTIITSGYSIILNTLTVDTRGYASSTSILLVFTVIATGYTATTRGCTAIF 112
Query: 116 PAYTQVSPAYTQVSLAY---TQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
T ++ Y V+ Y T + L T ++ YT + T VS YT + YT +
Sbjct: 113 LVLTTIARVYNTVTRGYAASTSILLVLTVIATGYTATTRGCTAVSRGYTAIVRGYTCCV 171
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 37/134 (27%)
Query: 59 SPAYTQVSPAYTQVSPA----YTQVSPA--YTQVSPAYIPVSPAYTPVSPAYTQVS---- 108
SP Y+ SP+Y+ SP Y+ SPA + SP+Y P SP Y+P SP +
Sbjct: 1634 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGMGATSP 1693
Query: 109 --------------PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1694 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1740
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1741 PRTPGPGNSGNQYS 1754
>gi|156370110|ref|XP_001628315.1| predicted protein [Nematostella vectensis]
gi|156215288|gb|EDO36252.1| predicted protein [Nematostella vectensis]
Length = 173
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 5 TYTPLIDTYTPLIDTYTPLVDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 64
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + YT +I
Sbjct: 65 LIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLI 115
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 12 TYTPLIDTYTPLVDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 71
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + YT +I
Sbjct: 72 LIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLI 122
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 19 TYTPLVDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 78
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + YT +I
Sbjct: 79 LIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDIYTPLI 129
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 26 TYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 85
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + YT +I
Sbjct: 86 LIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDIYTPLIDTYTPLI 136
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 33 TYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 92
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + YT +I
Sbjct: 93 LIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDIYTPLIDTYTPLIDTYTPLI 143
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 40 TYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 99
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + YT +I
Sbjct: 100 LIDTYTPLIDTYTPLIDTYTPLIDIYTPLIDTYTPLIDTYTPLIDTYTPLI 150
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 47 TYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 106
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + YT +I
Sbjct: 107 LIDTYTPLIDTYTPLIDIYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLI 157
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 54 TYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 113
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + YT + Y+ +I
Sbjct: 114 LIDTYTPLIDIYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYSPLI 164
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
YT + YT + YT + YT + Y P+ YTP+ YT + YT + YT
Sbjct: 61 TYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTP 120
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ YT + YT + YT + YT + YT + Y+ + YT +I
Sbjct: 121 LIDIYTPLIDTYTPLIDTYTPLIDTYTPLIDTYTPLIDTYSPLIDTYTPLI 171
>gi|402908739|ref|XP_003917093.1| PREDICTED: protein FAM65A isoform 1 [Papio anubis]
Length = 1220
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY-TQV 121
T P + P T S +T SP + P SP + T +SPA+T SP + T++
Sbjct: 591 TTTGPTVNVIGPVQTTTSHTHTMPSPTHTPTSPTHKTRMSTPTTISPAHTPTSPTHKTRM 650
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP T S + + L T SP VSP+ SP +SS
Sbjct: 651 SPPTT-TSPNPSAMGLVQTATSPTLINVSPS---TSPELATLSS 690
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY- 111
+T+ T P + P T S +T SP +T SP + T +SPA+T SP +
Sbjct: 588 STLTTTGPTVNVIGPVQTTTSHTHTMPSPTHTPTSPTHKTRMSTPTTISPAHTPTSPTHK 647
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
T++SP T SP + + L T S VSP+
Sbjct: 648 TRMSPPTT-TSPNPSAMGLVQTATSPTLINVSPS 680
>gi|336436800|ref|ZP_08616510.1| hypothetical protein HMPREF0988_02095 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336006619|gb|EGN36652.1| hypothetical protein HMPREF0988_02095 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 1199
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 47/107 (43%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
Q+S A Q++ +Q+ Q+ ++ ++ Y Q+S A TQ+ Q+
Sbjct: 476 QLSGAQAQLTAWKSQLDEGQAQLDAGQAALTAGQEELNAGYAQLSQAQTQLDEGQAQIDS 535
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
TQ+S ++ + TQ++ A +++ A +++ Q+
Sbjct: 536 GRTQISEGQAKLDAGKAALESGKTQLADAKSRLETAKQEIADGRAQL 582
>gi|254502798|ref|ZP_05114949.1| Methyl-accepting chemotaxis protein signaling domain [Labrenzia
alexandrii DFL-11]
gi|222438869|gb|EEE45548.1| Methyl-accepting chemotaxis protein signaling domain [Labrenzia
alexandrii DFL-11]
Length = 826
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%)
Query: 71 QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSL 130
+V TQ S A ++ + A A +++ T+V+ T ++ A Q
Sbjct: 699 EVKELATQTSKATEEIGSQITAIQTATKDSVVAIGEIAETMTEVNSYTTAIASAVEQQGA 758
Query: 131 AYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA 190
A ++S + + A VS + TQ+S A Q SS+ V+ +++ S E
Sbjct: 759 ATAEISQNVQRAAEATGAVSSSMTQLSQAVDQTSSSADMVLAASGELNEKTDQLKSEVET 818
Query: 191 FFHE 194
F E
Sbjct: 819 FLSE 822
>gi|291238720|ref|XP_002739275.1| PREDICTED: annexin max4-like [Saccoglossus kowalevskii]
Length = 221
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 47/134 (35%), Gaps = 27/134 (20%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAY---------------------------TQVSPA 89
+ P Y + P Y + P Y + P Y T VSP
Sbjct: 76 VIFPPYAVIFPPYAVIFPPYAVIFPPYAVIFPPNIDLLTICSDLLTICSDHQSNTLVSPP 135
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y + P + V P Y + P Y + P Y + P Y V Y + L Y V P Y +
Sbjct: 136 YAVIFPPHAVVVPPYAVIFPPYVVLVPPYAVIFPPYAVVVQPYAVIFLPYAVVVPPYAVI 195
Query: 150 SPAYTQVSPAYTQV 163
P Y V P Y +
Sbjct: 196 FPPYAVVVPPYAVI 209
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y + P Y + P Y + P Y + P I P Y + P+Y + P Y +
Sbjct: 6 YAIIFPPYAVIVPPYAVIFPPYAVIFPPSI---------FPPYAVIFPSYAVIFPPYAVI 56
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
P Y + Y + Y + P Y + P Y + P Y + Y + I
Sbjct: 57 FPPYAVIFRPYAVIFPPYAVIFPPYAVIFPPYAVIFPPYAVIFPPYAVIFPPNI 110
>gi|402908741|ref|XP_003917094.1| PREDICTED: protein FAM65A isoform 2 [Papio anubis]
Length = 1230
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY-TQV 121
T P + P T S +T SP + P SP + T +SPA+T SP + T++
Sbjct: 601 TTTGPTVNVIGPVQTTTSHTHTMPSPTHTPTSPTHKTRMSTPTTISPAHTPTSPTHKTRM 660
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP T S + + L T SP VSP+ SP +SS
Sbjct: 661 SPPTT-TSPNPSAMGLVQTATSPTLINVSPS---TSPELATLSS 700
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY- 111
+T+ T P + P T S +T SP +T SP + T +SPA+T SP +
Sbjct: 598 STLTTTGPTVNVIGPVQTTTSHTHTMPSPTHTPTSPTHKTRMSTPTTISPAHTPTSPTHK 657
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
T++SP T SP + + L T S VSP+
Sbjct: 658 TRMSPPTT-TSPNPSAMGLVQTATSPTLINVSPS 690
>gi|395511687|ref|XP_003760086.1| PREDICTED: myomesin-1 [Sarcophilus harrisii]
Length = 1620
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
S YT S AY+ +S A+ Q S AY S AY Q S AY+ S AY+ S ++ SSAY
Sbjct: 36 SAIYTHGSTAYSHMSSAHHQASEAYG--SSAYRQGSQAYSLGSAAYSLGSEVSSKASSAY 93
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
S YT S AY+ +S A+ Q S AY S AY Q S AY+ S AY+ S ++ S AY
Sbjct: 36 SAIYTHGSTAYSHMSSAHHQASEAYG--SSAYRQGSQAYSLGSAAYSLGSEVSSKASSAY 93
>gi|213866908|gb|ACJ54142.1| RNA polymerase II, partial [Plasmodium yoelii nigeriensis]
Length = 161
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y +SP Y+ SP Y+ SP Y+ SP P SP Y+P Y+ SP ++ SPAY+
Sbjct: 35 YNIMSPVYSVTSPKYSPTSPQYSPSSPVPNNPSSPQYSP----YSITSPKFSPTSPAYSI 90
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
SP Y + T+ +SPAY S + + TQV S Q N ++
Sbjct: 91 SSPVYDK-----TENMAGKNPLSPAYMLQSRVQIRQNAQGTQVFSPIQQGGANDVQ 141
>gi|47221988|emb|CAG08243.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1895
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 51 DEATVYTVSPAYTQ---VSPAYTQVSPAYTQVSP----AYTQVSPAYIPVSPAYTPVSPA 103
D V T SP T +S AY+ + +SP A P Y P P +P+ P+
Sbjct: 1451 DTQVVPTFSPHNTTNALMSEAYSSENSIIMSMSPYAHSASNMPPPIYAPQDPLGSPMMPS 1510
Query: 104 Y-------TQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
+ T V P +T +S + V PA++ V ++ ++T ++PA T
Sbjct: 1511 FSTFNAPSTSVMPTFTTLSSPSSPVLPAFSTVH-RNPPIASSFTPLNPADTSAYDGSPPR 1569
Query: 157 SPAYTQV 163
P QV
Sbjct: 1570 PPTTAQV 1576
>gi|381211096|ref|ZP_09918167.1| hypothetical protein LGrbi_14304 [Lentibacillus sp. Grbi]
Length = 195
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
A+ +V+ A + PA + + A + A + +PA V TQV A QV TQ
Sbjct: 35 AHVEVALAQVRALPAGVEAALAQVRSFLARVRAAPAQ--VRSLLTQVDDASAQVRALLTQ 92
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
V A QV TQV A QV Q PA + PA Q IL KI
Sbjct: 93 VDDASAQVRALLTQVDDASAQV-----QAFPARVETLPAQVYEPPVRVQTILLKI 142
>gi|291237846|ref|XP_002738840.1| PREDICTED: DNA-directed RNA polymerase II largest subunit-like
[Saccoglossus kowalevskii]
Length = 875
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 66/109 (60%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
AY+ + AY+ + AY+ + AY+ + AY+ + AY+P + AY+ + AY+ + AY+
Sbjct: 740 AYSSKTIAYSSKTIAYSSKTIAYSTKTIAYLSKTIAYSPKTIAYSSKTIAYSSKTIAYSS 799
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ AY+ ++AY+ ++AY+ + AY+ + AY+ + AY+ + AY+
Sbjct: 800 KTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSS 848
Score = 36.2 bits (82), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 65/110 (59%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
AY+ + AY+ + AY+ + AY + AY P + AY+ + AY+ + AY+ + AY+
Sbjct: 747 AYSSKTIAYSSKTIAYSTKTIAYLSKTIAYSPKTIAYSSKTIAYSSKTIAYSSKTIAYSS 806
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ AY+ ++AY+ ++AY+ + AY+ + AY+ + AY+ + AY+ +
Sbjct: 807 KTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSSKTIAYSTI 856
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 24/128 (18%)
Query: 59 SPAYTQVSPAYTQVSPA----YTQVSPA--YTQVSPAYIPVSPAYTPVSPAYTQVSPA-- 110
SP Y+ SP+Y+ SP Y+ SPA + SP+Y P SP Y+P SP + A
Sbjct: 1627 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATS 1686
Query: 111 ----------YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY 160
AY+ SP++ Q S Q + SP+Y+ SPA++ +P
Sbjct: 1687 PSYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ-----SPTSPSYSPTSPAFSPRTPGP 1740
Query: 161 TQVSSAYT 168
+ Y+
Sbjct: 1741 GNSGNQYS 1748
>gi|395510474|ref|XP_003759500.1| PREDICTED: transcription factor TFIIIB component B'' homolog
[Sarcophilus harrisii]
Length = 2900
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVS 115
Y SP S SP VS + T SP + SP SP VSP S
Sbjct: 1183 YASSPPQLTASSLQVVDSPHQDDVSLSQTNPSPPQMTASPTRDDTSPFQVYVSPFQVNTS 1242
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYT---QVSPAYTQVS-PAY 153
P QV+ + QVS + TQV +A++ +VSP S P Y
Sbjct: 1243 P--LQVAASSLQVSASPTQV-VAFSPEDEVSPVQVTASCPQY 1281
>gi|167748195|ref|ZP_02420322.1| hypothetical protein ANACAC_02939 [Anaerostipes caccae DSM 14662]
gi|167652187|gb|EDR96316.1| efflux ABC transporter, permease protein [Anaerostipes caccae DSM
14662]
Length = 1196
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 38 KRKDLEDYLSTDEDEATVYTVSPAYT-QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA 96
K K+ D L D+ + + Y Q+ +Q+ A ++S +++ A + A
Sbjct: 236 KHKNKLDKLVKDQPGLRLKKIKQEYQRQIDDGQSQIDKAKQKLSDTKDELANAGEQIEKA 295
Query: 97 YTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
T + + TQ+ A Q++ Q++ +TQ+ LA + A + TQ++ A+ +
Sbjct: 296 KTKIHASDTQLEKAQKQLASGQIQLNKKWTQLQLAKQALDSAKVTLQETETQLNTAHQAI 355
Query: 157 SPAYTQVSSAYTQV 170
+ +A +++
Sbjct: 356 RKGRESIKAADSEI 369
Score = 37.0 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 34 IEKFKRK--DLEDYLST--DEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
I+K K+K D +D L+ ++ E + + TQ+ A Q++ Q++ +TQ+ A
Sbjct: 271 IDKAKQKLSDTKDELANAGEQIEKAKTKIHASDTQLEKAQKQLASGQIQLNKKWTQLQLA 330
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
+ A + TQ++ A+ + + A +++S+ T++ A ++ + Q+
Sbjct: 331 KQALDSAKVTLQETETQLNTAHQAIRKGRESIKAADSEISVKETELVRAKKTIAASEKQL 390
Query: 150 SPAYTQVSPAYTQVSSAYT 168
++ + ++AYT
Sbjct: 391 EEKTSEFHKKQQEYNTAYT 409
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 67 PAYTQVSPAYT-QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
P+ +SP Y SP + +SP+ P + Y+P SP Y+ A Q +P Y+ +SP Y
Sbjct: 1575 PSPNSMSPNYNYPSSPQFGSMSPSMTPTN--YSPTSPQYS----ATQQNTPKYSSMSPNY 1628
Score = 38.1 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 25/96 (26%)
Query: 90 YIPVSPAYTPVSPA------YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT--- 140
Y SP+YTP + + Y+ SP+ VSP Y+ SP Y+ + +Y+ S+ +T
Sbjct: 1740 YTASSPSYTPSAASGASNYKYSPTSPSLA-VSPTYSPTSPMYSPSNASYSPSSVQHTPNA 1798
Query: 141 ---------------QVSPAYTQVSPAYTQVSPAYT 161
++ SP Y+ SP Y+
Sbjct: 1799 GVTQYNQSYSPSSPVYSPTNFSLASPRYSPTSPTYS 1834
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 67 PAYTQVSPAYT-QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
P+ +SP Y SP + +SP+ P + Y+P SP Y+ A Q +P Y+ +SP Y
Sbjct: 1575 PSPNSMSPNYNYPSSPQFGSMSPSMTPTN--YSPTSPQYS----ATQQNTPKYSSMSPNY 1628
Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 25/96 (26%)
Query: 90 YIPVSPAYTPVSPA------YTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYT--- 140
Y SP+YTP + + Y+ SP+ VSP Y+ SP Y+ + +Y+ S+ +T
Sbjct: 1740 YTASSPSYTPSATSGASNYKYSPTSPSLA-VSPTYSPTSPMYSPSNASYSPSSVQHTPNA 1798
Query: 141 ---------------QVSPAYTQVSPAYTQVSPAYT 161
++ SP Y+ SP Y+
Sbjct: 1799 GVTQYNQSYSPSSPVYSPTNFSLASPRYSPTSPTYS 1834
>gi|329939317|ref|ZP_08288653.1| putative membrane protein [Streptomyces griseoaurantiacus M045]
gi|329301546|gb|EGG45440.1| putative membrane protein [Streptomyces griseoaurantiacus M045]
Length = 380
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA--YIPVSPAYTPVSPAYTQVS 108
D A PA PA PA PA PA P +P P +
Sbjct: 143 DPAPAGAEGPASGTKPPASGAEPPASGTKPPASGAEPPASDAKPSAPGTEPPA------- 195
Query: 109 PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYT 168
A ++ SPA ++ S A ++ S A ++ S A ++ SPA ++ S A ++ SPA ++ S+A
Sbjct: 196 -AGSEPSPADSEPSAAGSEPSPADSEPSAAGSEPSPADSEPSAAGSEPSPADSEPSAAGN 254
Query: 169 Q 169
+
Sbjct: 255 E 255
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1619 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1678
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1679 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1725
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1726 PRTPGPGNSGNQYS 1739
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1634 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1693
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1694 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1740
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1741 PRTPGPGNSGNQYS 1754
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1629 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1688
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1689 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1735
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1736 PRTPGPGNSGNQYS 1749
>gi|422012030|ref|ZP_16358774.1| hypothetical protein HMPREF1317_0432 [Actinomyces georgiae F0490]
gi|394761231|gb|EJF43639.1| hypothetical protein HMPREF1317_0432 [Actinomyces georgiae F0490]
Length = 187
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 32 ILIEKFKRKDLED----YLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 87
+++E + + D Y + YT P Y Q P Y Q P Y Q P Y Q
Sbjct: 1 MVVELDRETKMSDPYNPYAQPQQPTGPSYTPDPGYGQPQPGYGQ--PGYGQPQPMYGQ-- 56
Query: 88 PAYIPVSPAYTPVSPAYTQVSPAYTQ----VSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
P Y P Y Q P Y Q P Y S A T L + A+
Sbjct: 57 -------PGYGQPQPMYGQPQPMYGQPLASFGPEYELRSKAGTVFGLGLASLICAFCNFI 109
Query: 144 P 144
P
Sbjct: 110 P 110
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P P+YTP P Y Q P Y Q P Y Q P Y Q P Y Q P
Sbjct: 24 PTGPSYTP-DPGYGQPQPGYGQ--PGYGQPQPMYGQ----------------PGYGQPQP 64
Query: 152 AYTQVSPAYTQ 162
Y Q P Y Q
Sbjct: 65 MYGQPQPMYGQ 75
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-YTQVSPAYI--PVSPAYTPVSPAYTQVSPAYTQVS 115
SP Y+ SP+Y+ SP SP Y+ SPA P SP+Y+P SP Y+ SP +
Sbjct: 1627 SPNYSPTSPSYSPTSP----TSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAA 1682
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ--VSPAYTQVSSAYT 168
A + AY+ SP++ Q SP Q SP+Y+ S A++
Sbjct: 1683 GATSPS--YSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQSPTSPSYSPTSPAFS 1734
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 45/126 (35%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1627 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATS 1686
Query: 110 ----------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAY 153
AY+ SP++ Q SP Q + SP+Y+ SPA+
Sbjct: 1687 PSYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAF 1733
Query: 154 TQVSPA 159
+ +P
Sbjct: 1734 SPRTPG 1739
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1625 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1684
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1685 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1731
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1732 PRTPGPGNSGNQYS 1745
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1633 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGATSP 1692
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1693 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1739
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1740 PRTPGPGNSGNQYS 1753
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1629 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1688
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1689 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1735
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1736 PRTPGPGNSGNQYS 1749
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1619 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1678
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1679 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1725
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1726 PRTPGPGNSGNQYS 1739
>gi|327284125|ref|XP_003226789.1| PREDICTED: hypothetical protein LOC100555559 [Anolis carolinensis]
Length = 430
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 10 IGGTLTVEIFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAY 69
+G L + ++F+LL + + + + PA +PAY
Sbjct: 1 MGKYLVLCSIAILFILLQTEVSMSLSRRGSSRPSGGGNRGSHHKPSRPAHPANPAQNPAY 60
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
+P Y Q +PAY +P Y P +P Y P +P+Y +P Y Q +P Y Q
Sbjct: 61 PPHNPGYPQHNPAYPAPNPGY-PHNPNY-PQNPSYPHPNPGYPQ-NPNYPQ 108
>gi|348684334|gb|EGZ24149.1| hypothetical protein PHYSODRAFT_349852 [Phytophthora sojae]
Length = 1042
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 65 VSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPA 124
VSP VSP SP T SP P SP PVSP VSP + +PA Q PA
Sbjct: 786 VSPKAAPVSPKAAPASPQATPASPKATPASPKAAPVSPKAAPVSP---KAAPASPQAVPA 842
Query: 125 YTQVSLAYTQVS 136
VS T S
Sbjct: 843 PAPVSAKATGRS 854
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1637 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGATSP 1696
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1697 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1743
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1744 PRTPGPGNSGNQYS 1757
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1627 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1686
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1687 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1733
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1734 PRTPGPGNSGNQYS 1747
>gi|444317905|ref|XP_004179610.1| hypothetical protein TBLA_0C02850 [Tetrapisispora blattae CBS 6284]
gi|387512651|emb|CCH60091.1| hypothetical protein TBLA_0C02850 [Tetrapisispora blattae CBS 6284]
Length = 2525
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 77 TQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVS 136
TQ+S QVS +P++ + + S Q P Q+ P+Y P+Y Q+ + +
Sbjct: 2245 TQISSTIPQVSNYNLPMTNSNSQYSQNKQQFQPLNNQLPPSYQPFPPSYQQIQPVFQNFN 2304
Query: 137 LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y Q++P Q +P+ Q +P Q
Sbjct: 2305 PTYQQLTPIQRQFTPSNPQFAPINQQ 2330
>gi|350404723|ref|XP_003487197.1| PREDICTED: hypothetical protein LOC100745691 [Bombus impatiens]
Length = 341
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/115 (18%), Positives = 55/115 (47%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y + + Y Q++ + Q++ + Q++ Y ++ Y ++ Y Q++ Y Q++ Y ++
Sbjct: 193 YPRTNCEYPQMNGEHPQMNGEHPQMNREYPQMNREYPQMNREYPQMNREYPQMNREYLRM 252
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
+ Y + + + + Y P Y++ +P + Y + S+ +V+ +R
Sbjct: 253 NRVYRRTNRGCSWMKHEYPWKKPDYSRTNPHSIETLGEYQRASAKGREVLRYDLR 307
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 9/158 (5%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ-------VSPAYTQV 114
Y + + Y Q + Y + + Y + Y P + Y P + Y Q + Y +
Sbjct: 130 YQRTNELYPQTNEFYPRTNVMYPPKNVVYPPKNVVYPPTNVVYPQTNREFPWTNREYPRT 189
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNK 174
+ Y + + Y Q++ + Q++ + Q++ Y Q++ Y Q++ Y Q++ Y Q+
Sbjct: 190 NCEYPRTNCEYPQMNGEHPQMNGEHPQMNREYPQMNREYPQMNREYPQMNREYPQMNREY 249
Query: 175 IRPGRESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAM 212
+R R + HE+ W PD + T P ++
Sbjct: 250 LRMNRVYRRTNRGCSWMKHEYPWKK--PDYSRTNPHSI 285
>gi|449265605|gb|EMC76773.1| hypothetical protein A306_16123, partial [Columba livia]
Length = 111
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
+VSP YTQ + +VSP YTQ P VSP YTP P +V Q+ P+ + P
Sbjct: 4 KVSPKYTQ---SVPKVSPKYTQSVPQ---VSPKYTPSVPQ--RVPQRVPQIHPSVPKYPP 55
Query: 124 AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
+ + QVS Q +P + P QVSP + +VS + Q +
Sbjct: 56 SVPKCPQNTPQVSPECPQNTPKVSPSVPKTPQVSPKHPRVSPKHPQSV 103
>gi|260817404|ref|XP_002603577.1| hypothetical protein BRAFLDRAFT_93222 [Branchiostoma floridae]
gi|229288896|gb|EEN59588.1| hypothetical protein BRAFLDRAFT_93222 [Branchiostoma floridae]
Length = 1309
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+ V P+ V P+ V P+ V P+ V P+ V P+ V P+ V P+
Sbjct: 530 PSTVAVHPSTAAVHPSTATVHPSTAAVHPSTAAVHPSTAAVHPSTAAVQPSTAAVQPSTA 589
Query: 120 QVSP--AYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
V P A Q S A Q S A Q S A Q S A T + + ++ SA
Sbjct: 590 AVQPSTAAAQPSTAAVQPSTAAVQPSTAAVQPSTARTTLQASTAKLPSA 638
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA--------YTQVSPAYIPVSPAY-TPVSPAYTQVSP 109
SPA++ + PA + P+ Y+ SPA+ P SP+ TP SP Y+ SP
Sbjct: 1556 SPAWSPQPGSPGSPGPAMSPYIPSPIGGTSPSYSPSSPAFQPASPSVGTPNSPNYSPTSP 1615
Query: 110 AYTQVSPAYTQVSPA 124
Y+ SP Y+ SP
Sbjct: 1616 TYSPTSPNYSPTSPG 1630
>gi|255283108|ref|ZP_05347663.1| NlpC/P60 family protein [Bryantella formatexigens DSM 14469]
gi|255266410|gb|EET59615.1| NlpC/P60 family protein [Marvinbryantia formatexigens DSM 14469]
Length = 465
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
Y + P Y + YT+ P Y + P Y+ P Y YT+ P Y + P Y +
Sbjct: 287 YVETEPEYVETEAPYTE--PEYVETEPEYVETEPEYVETEAPYTE--PEYVETEPEYVET 342
Query: 122 SPAYTQVS 129
P+Y+ +
Sbjct: 343 EPSYSDLG 350
>gi|218194900|gb|EEC77327.1| hypothetical protein OsI_15999 [Oryza sativa Indica Group]
Length = 265
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 66/205 (32%), Gaps = 24/205 (11%)
Query: 6 FLGLIGGTLTVEIFLLVFLLLNVLSYILIEKFKRKDLEDY-------LSTDEDEATVYTV 58
+ G + Y ++R DY + D A
Sbjct: 23 WTCFCGPMVMAPPPPPPPRTAASPEYTPSTPWRRAASPDYTPSTPWRRAASPDHAPSPPW 82
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY---TQVS 115
SP+ SP Y+ +P SP Y+ +P SP YTP +P SP Y T S
Sbjct: 83 SPSRRAASPDYSPSTPPRRAASPDYSPSTPPRRAASPDYTPSTPWRRAASPDYAPSTPWS 142
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSP--------------AYTQVSPAYTQVSPAYT 161
P SP Y+ + S YT +P SP YTQ+SP
Sbjct: 143 PPRRASSPDYSPSTPPRRAASPNYTPSTPPRRAASPDYSPSSPPRRAASPEYTQLSPPRR 202
Query: 162 QVSSAYTQVILNKIRPGRESNSRSS 186
S Y ++ SR+S
Sbjct: 203 AASPDYNPSTPPPSPVPSDAGSRTS 227
>gi|291455890|ref|ZP_06595280.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|291382299|gb|EFE89817.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213 =
JCM 1192]
Length = 455
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 48/102 (47%), Gaps = 23/102 (22%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVS------PAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
+ A TV+P Y +PAY Q+S PAY Q P TQ +PAY S
Sbjct: 36 NNPAEPNTVAPQYGAPAPAYGQLSGNPYEQPAYGQEQP--TQPNPAY----------SQP 83
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSL-AYTQVSLAYTQVSP 144
Y Q PA Q +PAY Q PAY Q + Y Q AY QV P
Sbjct: 84 YGQ--PAGAQSAPAYGQ--PAYGQPNGNPYGQPDGAYGQVPP 121
>gi|156354190|ref|XP_001623283.1| predicted protein [Nematostella vectensis]
gi|156209966|gb|EDO31183.1| predicted protein [Nematostella vectensis]
Length = 395
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P +V+P +V+P +V+P +V+P I V+P V+P +V+P V+P
Sbjct: 313 VTPCAIRVTPCGIRVTPCGIRVTPCAIRVTPCAIRVTPCAIRVTPYAIRVTPCAIMVTPC 372
Query: 118 YTQVSP 123
+V+P
Sbjct: 373 AIRVTP 378
Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+P +V+P +V+P +V+P +V+P I V+P V+P V+P +V+P
Sbjct: 320 VTPCGIRVTPCGIRVTPCAIRVTPCAIRVTPCAIRVTPYAIRVTPCAIMVTPCAIRVTPY 379
Query: 118 YTQVSPA 124
+V+P
Sbjct: 380 AIRVTPC 386
>gi|82705291|ref|XP_726910.1| gamma-gliadin [Plasmodium yoelii yoelii 17XNL]
gi|23482510|gb|EAA18475.1| gamma-gliadin [Plasmodium yoelii yoelii]
Length = 800
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Query: 41 DLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV 100
D E+ + + A T+ P Y+Q+ P Q SP +Q P Q SP P
Sbjct: 364 DFENTVFNPVELANSATIQPNYSQLLPQVCQASPQISQPLPQVCQASPQISQPLPQVCQT 423
Query: 101 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYT-------QVSPAY 153
S + Q Y Q SP +Q P Q S +Q L Q S + Q +P
Sbjct: 424 SAQFPQPIIQYCQASPQVSQPIPQVCQTSAQISQPILQSFQASTQNSQPILQSFQAAPQI 483
Query: 154 TQVSPAYTQVSSAYTQVI 171
+Q P Q S+ +Q I
Sbjct: 484 SQPLPKVCQTSAQISQPI 501
>gi|213867912|gb|ACJ54144.1| RNA polymerase II, partial [Plasmodium vinckei]
gi|213867914|gb|ACJ54145.1| RNA polymerase II, partial [Plasmodium vinckei]
gi|213867916|gb|ACJ54146.1| RNA polymerase II, partial [Plasmodium vinckei lentum]
gi|213867918|gb|ACJ54147.1| RNA polymerase II, partial [Plasmodium vinckei]
Length = 161
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y +SP Y+ SP Y+ SP Y+ SP P SP Y+P Y+ SP ++ SPAY+
Sbjct: 35 YNIMSPVYSVTSPKYSPTSPQYSPSSPVPNNPSSPQYSP----YSITSPKFSPTSPAYSI 90
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
SP Y + ++ +SPAY S + + TQV S Q N ++
Sbjct: 91 SSPVYDK-----SENMAGKNPLSPAYMLQSRVQIRQNAQGTQVFSPIQQGGANDVQ 141
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 44/125 (35%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP+Y+P SP Y+ SP
Sbjct: 1619 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1678
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1679 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1725
Query: 155 QVSPA 159
+P
Sbjct: 1726 PRTPG 1730
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SPAY+P SP Y+ SP Y+ Y+ SP+Y +SP++T SP
Sbjct: 1765 PFSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGGAP--------GQGPLSPSFTVQSP 1816
Query: 152 AYTQVSPA 159
Y+ SPA
Sbjct: 1817 RYSPSSPA 1824
>gi|433456842|ref|ZP_20414870.1| hypothetical protein D477_07838 [Arthrobacter crystallopoietes
BAB-32]
gi|432195703|gb|ELK52214.1| hypothetical protein D477_07838 [Arthrobacter crystallopoietes
BAB-32]
Length = 278
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 64 QVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSP 123
Q P Y Q P Y Q S Y Q P Y Y +P Y Q +P Y Q +Y Q +P
Sbjct: 27 QEQPRYGQNPPQYGQQSGPYGQNQPQY----GQYGQNTPQYGQNAPGYGQQPGSYGQGTP 82
Query: 124 AYTQ 127
+Y Q
Sbjct: 83 SYGQ 86
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 37.4 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP SP+Y+ SP Y+ SP Y+ S Y+ S + Y+ SP+Y+ +
Sbjct: 1578 YAPNSPG--GASPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSATQNYSPTSPSYSPM 1635
Query: 150 SPAY 153
SP +
Sbjct: 1636 SPMH 1639
Score = 36.6 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYT-------QVSPAYIPVSPAYTPVSPAY 104
SP+Y+ SP Y+ SP Y+ S Y+ + Y P SP+Y+P+SP +
Sbjct: 1587 SPSYSPTSPGYSPPSPQYSPGSSNYSPSSPNIHSATQNYSPTSPSYSPMSPMH 1639
>gi|355710296|gb|EHH31760.1| hypothetical protein EGK_12896 [Macaca mulatta]
Length = 1182
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 63 TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVS 122
T P + P T S +T SP + P SP + T +SP +T SP +
Sbjct: 553 TTTGPTVNIIGPVQTTTSHIHTMPSPTHTPTSPTHKTRMSTSTTISPTHTPTSPTHKARM 612
Query: 123 PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
T S + + L T SP T VSP+ SP +SS
Sbjct: 613 SPPTTTSPNPSAMGLVQTATSPTLTNVSPS---TSPELATLSS 652
Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
+T+ T P + P T S +T SP +T SP + T +SP +T SP +
Sbjct: 550 STLTTTGPTVNIIGPVQTTTSHIHTMPSPTHTPTSPTHKTRMSTSTTISPTHTPTSPTHK 609
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
T SP + + L T S T VSP+
Sbjct: 610 ARMSPPTTTSPNPSAMGLVQTATSPTLTNVSPS 642
>gi|339478449|gb|ABE94904.1| Conserved hypothetical membrane spanning protein with DUF805 domain
[Bifidobacterium breve UCC2003]
Length = 449
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 48/102 (47%), Gaps = 23/102 (22%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVS------PAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
+ A TV+P Y +PAY Q+S PAY Q P TQ +PAY S
Sbjct: 23 NNPAEPNTVAPQYGAPAPAYGQLSGNPYGQPAYGQEQP--TQPNPAY----------SQP 70
Query: 104 YTQVSPAYTQVSPAYTQVSPAYTQVSL-AYTQVSLAYTQVSP 144
Y Q PA Q +PAY Q PAY Q + Y Q AY QV P
Sbjct: 71 YGQ--PAGAQSAPAYGQ--PAYGQPNGNPYGQPDGAYGQVPP 108
>gi|213866898|gb|ACJ54137.1| RNA polymerase II, partial [Plasmodium berghei]
gi|213866900|gb|ACJ54138.1| RNA polymerase II, partial [Plasmodium berghei]
Length = 161
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTP---VSPAYTQVSPAYTQVSPA 117
Y +SP Y+ SP Y+ SP Y+ SP P SP Y+P SP ++ SPAY+ SP
Sbjct: 35 YNIMSPVYSVTSPKYSPTSPQYSPSSPVPNNPSSPQYSPYSITSPKFSPTSPAYSISSPV 94
Query: 118 YTQ---------VSPAYTQVSLAYTQVSLAYTQV 142
Y + +SPAY S + + TQV
Sbjct: 95 YDKNENMTGKNPLSPAYMLQSRVQIRQNAQGTQV 128
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 22/106 (20%)
Query: 61 AYTQVSPAYTQVS---PAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ----VSPAYTQ 113
AY+ +SP + S PAY+ SP+Y + Y P SP+Y + Q SP Y+
Sbjct: 1652 AYSPLSPVFEAASVYTPAYSPTSPSYAGAAGVYSPSSPSYHAAAGVGAQPLSVTSPEYSP 1711
Query: 114 VSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP SPA SP ++ SP ++ SP
Sbjct: 1712 TSPQMNLASPA---------------GGYSPTFSTTSPKFSPTSPG 1742
>gi|213866902|gb|ACJ54139.1| RNA polymerase II, partial [Plasmodium yoelii yoelii]
gi|213866904|gb|ACJ54140.1| RNA polymerase II, partial [Plasmodium yoelii yoelii]
gi|213866906|gb|ACJ54141.1| RNA polymerase II, partial [Plasmodium yoelii killicki]
Length = 161
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSP-AYIPVSPAYTP---VSPAYTQVSPAYTQVSPA 117
Y +SP Y+ SP Y+ SP Y+ SP P SP Y+P SP ++ SPAY+ SP
Sbjct: 35 YNIMSPVYSVTSPKYSPTSPQYSPSSPVPNNPSSPQYSPYSITSPKFSPTSPAYSISSPV 94
Query: 118 YTQ---------VSPAYTQVSLAYTQVSLAYTQV 142
Y + +SPAY S + + TQV
Sbjct: 95 YDKNENMAGKNPLSPAYMLQSRVQIRQNAQGTQV 128
>gi|334117090|ref|ZP_08491182.1| hypothetical protein MicvaDRAFT_4343 [Microcoleus vaginatus FGP-2]
gi|333461910|gb|EGK90515.1| hypothetical protein MicvaDRAFT_4343 [Microcoleus vaginatus FGP-2]
Length = 1165
Score = 37.4 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 70 TQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 129
+QVS ++ Y S I + A T S Y+Q+S + +Q+ A + +QVS
Sbjct: 520 SQVSELENHLNSVYQTRSELEIQLESANTERSHLYSQLSESQSQIETANQNQTQLQSQVS 579
Query: 130 LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Q+ S +Q+ A T+ S Y+Q+S +QV
Sbjct: 580 ELENQLESVRQSRSELESQLETANTERSHLYSQLSEFQSQV 620
Score = 36.2 bits (82), Expect = 8.7, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEA-TVY-TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVS 87
S I K + L+ +S E+ +VY T S Q+ A T+ S Y+Q+S TQ+
Sbjct: 766 SQIETAKHNQAQLQSQVSELENHLNSVYQTRSELEVQLESANTERSHLYSQISQLQTQIE 825
Query: 88 PAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYT 147
+ + +S Q+ S +Q+ A + S Y+Q+S +Q+ A
Sbjct: 826 TGNQNQNQLQSQISDLENQLESVRQSRSELESQLETANRERSHLYSQLSEFQSQIETANQ 885
Query: 148 QVSPAYTQVSPAYTQVSSAYTQ 169
+ +QVS Q+ + Y Q
Sbjct: 886 NQAQLQSQVSELEHQLETVYQQ 907
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 37/134 (27%)
Query: 59 SPAYTQVSPAYTQVSPA----YTQVSPA--YTQVSPAYIPVSPAYTPVSPAYTQVS---- 108
SP Y+ SP+Y SP Y+ SPA + SP+Y P SP Y+P SP
Sbjct: 1634 SPNYSPTSPSYLPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSP 1693
Query: 109 --------------PAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1694 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1740
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1741 PRTPGPGNSGNQYS 1754
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-YTQVSPAYI--PVSPAYTPVSPAYTQVSPAYTQVS 115
SP Y+ SP+Y+ SP SP Y+ SPA P SP Y+P SP Y+ SP
Sbjct: 1637 SPNYSPTSPSYSPTSP----TSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLH--G 1690
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ--VSPAYTQVSSAYT 168
A AY+ SP++ Q SP Q SP+Y+ S A++
Sbjct: 1691 GAGPTSPSYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQSPTSPSYSPTSPAFS 1744
>gi|346326871|gb|EGX96467.1| hypothetical protein CCM_01124 [Cordyceps militaris CM01]
Length = 678
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 42/114 (36%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYT 105
L+ D + + +PA +PA +PA +PA +PA PA SPA
Sbjct: 446 LAQDSSKPAQDSSNPAQNAGNPAQNAGNPAQNSANPAQNSANPAQDSGKPAQDSSSPAQD 505
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
PA PA PA + + A +PA S + V P+
Sbjct: 506 FGKPAQDSSKPAQNAGKPAQNAGKPSQDAANPAQNSANPAQNSSSRPGSSVGPS 559
Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 43/123 (34%), Gaps = 5/123 (4%)
Query: 53 ATVYTVSP-----AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
A V T+ P A PA +PA +PA +PA +PA +PA
Sbjct: 434 APVGTIKPIAANLAQDSSKPAQDSSNPAQNAGNPAQNAGNPAQNSANPAQNSANPAQDSG 493
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
PA SPA PA A A P+ +PA +PA S
Sbjct: 494 KPAQDSSSPAQDFGKPAQDSSKPAQNAGKPAQNAGKPSQDAANPAQNSANPAQNSSSRPG 553
Query: 168 TQV 170
+ V
Sbjct: 554 SSV 556
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 44/134 (32%)
Query: 66 SPAYTQVSPAYTQVSPA----YTQVSPAYI--PVSPAYTPVSPAYTQVSP---------- 109
SP Y+ SP+Y+ SP Y+ SPA P SP Y+P SP Y+ SP
Sbjct: 1634 SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHGAGATSP 1693
Query: 110 ---------------AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYT 154
AY+ SP++ Q SP Q + SP+Y+ SPA++
Sbjct: 1694 SYSPASPSWSPTSPEAYSPTSPSF-QRSPGNQQ------------SPTSPSYSPTSPAFS 1740
Query: 155 QVSPAYTQVSSAYT 168
+P + Y+
Sbjct: 1741 PRTPGPGNSGNQYS 1754
>gi|384247586|gb|EIE21072.1| hypothetical protein COCSUDRAFT_54113 [Coccomyxa subellipsoidea
C-169]
Length = 305
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query: 37 FKRKDLEDYLSTDEDEATVYTVSPAYTQV-----------SPAYTQVSPAYTQVSPAYTQ 85
F + + L + AT+ VSPA+ + P S VS
Sbjct: 104 FNQLSADAALLNKQIIATITAVSPAFAKTVNLAAPQFFVNKPNTITASQTLVSVSEQLFS 163
Query: 86 VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
V+P I +S V+P VSP QV Q+ P V ++ SP
Sbjct: 164 VAPCLIALSQTGVQVNPVLIGVSPRLIQVDAVGVQIQPELITVDPTLINIAPNGVSASPT 223
Query: 146 YTQVSPAYTQVSP 158
+ SP + VSP
Sbjct: 224 NVKASPTFIDVSP 236
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 37.0 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 93 VSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY-TQVSLAYTQVSLAYTQVSPAYTQVSP 151
+SP Y+P SP VSP + PA + P+ +S +Y+ S Y SP+ + SP
Sbjct: 1550 LSPGYSPWSPGGGGVSP--SSPGPAASPYIPSPGGALSPSYSPSSPTYAPTSPSMSPASP 1607
Query: 152 AYTQVSPAYTQVS 164
Y+ SP+Y+ S
Sbjct: 1608 NYSPTSPSYSPTS 1620
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 37.0 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
Y+ SP Y+ S +Y+ S Y+ SP Y+ SP Y+ SP
Sbjct: 1690 YSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPGSPEYSPNSP 1730
>gi|340708979|ref|XP_003393094.1| PREDICTED: hypothetical protein LOC100651475 [Bombus terrestris]
Length = 1044
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T +SP+ +SP SP Q SP +Q SP SP + A T S + S
Sbjct: 473 TPLSPSVSQLSPHLNTSSPHLNQNSPHLSQASPQLNTHSPHAVSMESANTTNSQQINRNS 532
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
P SP T SP Y V+SA Q+I
Sbjct: 533 PL---TSPHQTN-SPTYNAVASAGQQII 556
>gi|350418949|ref|XP_003492021.1| PREDICTED: hypothetical protein LOC100747221 [Bombus impatiens]
Length = 1044
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T +SP+ +SP SP Q SP +Q SP SP + A T S + S
Sbjct: 473 TPLSPSVSQLSPHLNTSSPHLNQNSPHLSQASPQLNTHSPHAVSMESANTTNSQQINRNS 532
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQVI 171
P SP T SP Y V+SA Q+I
Sbjct: 533 PL---TSPHQTN-SPTYNAVASAGQQII 556
>gi|260940435|ref|XP_002614517.1| hypothetical protein CLUG_05295 [Clavispora lusitaniae ATCC 42720]
gi|238851703|gb|EEQ41167.1| hypothetical protein CLUG_05295 [Clavispora lusitaniae ATCC 42720]
Length = 877
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
P+ T++ P+ T+V P+ T+ P+ T+V P+ P + V ++V P+ T+V P+ T
Sbjct: 495 PSSTEIPPSSTEVPPSSTEAPPSSTEVPPSCSSKVPPTSEV--PSSEVPPSSTEVPPSST 552
Query: 120 QVSPAYTQV 128
+ PA ++V
Sbjct: 553 EAPPASSEV 561
>gi|328768198|gb|EGF78245.1| hypothetical protein BATDEDRAFT_35728 [Batrachochytrium
dendrobatidis JAM81]
Length = 658
Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
D+ Y ++ A T SPA T P+ T SP+ T SPA P+ T SP+ T SPA
Sbjct: 473 DDIPSYPLALAATTDSPATTVDGPSTTADSPSTTD-SPATTVDGPSTTADSPSTTD-SPA 530
Query: 111 YTQVSPAYTQVSPAYTQ-----VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
T P+ T SP+ T V T T SPA T P+ T SP+ T
Sbjct: 531 TTVDGPSTTADSPSTTDSPATTVDGPSTTADSPSTTDSPATTVDGPSTTADSPSTTD 587
>gi|390599545|gb|EIN08941.1| hypothetical protein PUNSTDRAFT_134115 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1715
Score = 36.6 bits (83), Expect = 7.3, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQV 156
QV+P QV PA +V+ A QV+ A +V+PA +V+PA QV
Sbjct: 223 QVAPDNEQVVPANKEVAPASEQVAPANEEVAPANKEVAPANEQV 266
>gi|260826694|ref|XP_002608300.1| hypothetical protein BRAFLDRAFT_89277 [Branchiostoma floridae]
gi|229293651|gb|EEN64310.1| hypothetical protein BRAFLDRAFT_89277 [Branchiostoma floridae]
Length = 3269
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 38 KRKDLEDY-------LSTDEDEATVYTVSPA-----YTQVSPAYTQVSPAYTQVS--PAY 83
KRK +DY L TD+DE SP ++ + + + V+P + Q P
Sbjct: 1610 KRKGKKDYKASFLYNLLTDKDEMKDVVRSPGADPSMQSRCNESLSVVTPLFPQEVEIPMI 1669
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+SPA + +S A VSPA +SPA +SPAY
Sbjct: 1670 QGLSPAPMSMSSAPLNVSPASGNMSPAILNMSPAY 1704
>gi|9795|emb|CAA43584.1| RNA polymerase largest subunit [Plasmodium berghei]
Length = 204
Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSP-----------AYTQVSPAYTQVSPAYTQVSPA 124
Y +SP Y+ SP Y P SP Y+P SP Y+ SP ++ SPAY+ SP
Sbjct: 78 YNIMSPVYSVTSPKYSPTSPKYSPTSPVPNNPSSPQYSPYSITSPKFSPTSPAYSISSPV 137
Query: 125 YTQVSLAYTQVSLAYTQVSPAY 146
Y + + +SPAY
Sbjct: 138 YDK-----NENMTGKNPLSPAY 154
>gi|156406472|ref|XP_001641069.1| predicted protein [Nematostella vectensis]
gi|156228206|gb|EDO49006.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 18 IFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVS 59
I LVF++LN +SY ++ ++R+ +D +S+D+++ATVY +S
Sbjct: 25 ISFLVFVILNSISYAVVYSYRRR--KDEISSDDEDATVYRIS 64
>gi|225419700|ref|ZP_03762003.1| hypothetical protein CLOSTASPAR_06038 [Clostridium asparagiforme
DSM 15981]
gi|225041664|gb|EEG51910.1| hypothetical protein CLOSTASPAR_06038 [Clostridium asparagiforme
DSM 15981]
Length = 303
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 48 TDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
TD + ++V P Y V P ++ V P Y + P ++ V+P Y P+ P ++ V P Y +
Sbjct: 28 TDNNIDPDFSVMPPYEPVDPDFS-VMPPYEPIDPDFS-VTPPYEPIDPDFS-VMPPYEPI 84
Query: 108 SPAYTQVSPAYTQVSP 123
P ++ + P+Y V P
Sbjct: 85 DPDFSVMPPSYPIVPP 100
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 36.6 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSP 102
Y+ SP Y+ SP+Y P SP Y P SP
Sbjct: 1701 YSPTSPQYSPTSPSYSPGSPGYKPESP 1727
>gi|55140556|gb|AAV41429.1| RNA polymerase II largest subunit [Periplaneta americana]
Length = 97
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
YT SP Y+ SP Y P P Y+P SP Y+ SPAY
Sbjct: 58 YTPTSPNYSPSSPTYSPAVPGYSPTSPTYSPTSPAY 93
>gi|392593710|gb|EIW83035.1| hypothetical protein CONPUDRAFT_164048 [Coniophora puteana
RWD-64-598 SS2]
Length = 1083
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQ 127
+QVS A + S A ++VS A S A + S + + +S A +Q +QVS A +Q
Sbjct: 346 GQSQVSQAQSHASQARSRVSQARSQASQAQSHASQSRSHMSHARSQT---QSQVSQARSQ 402
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQVILNK 174
S +QVS + +Q PA +QVS A +QV A +QVS +QV K
Sbjct: 403 ASQVRSQVSQSQSQAPPARSQVSQAPRSQV--ARSQVSQVRSQVSQGK 448
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1689 YSPTSPSYSPTSPGYSPGSPAYS 1711
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1689 YSPTSPSYSPTSPGYSPGSPAYS 1711
>gi|281343610|gb|EFB19194.1| hypothetical protein PANDA_000639 [Ailuropoda melanoleuca]
Length = 1022
Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 64/153 (41%), Gaps = 20/153 (13%)
Query: 22 VFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYT--VSPAYTQVSPAYTQVSPAYTQV 79
V L + S I E R +ED + E EA V P T VS A V P T+V
Sbjct: 191 VTLAKDTESSIESE---RAIVEDMVLPRETEAASLKDAVLPTETVVSLAKDMVLPPETEV 247
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
+PA +P SP VSP V P +++PA VSL+ +V+LA
Sbjct: 248 APAKD-----VLPFKETER-ASPIKMDVSPVEGMVLPTDREIAPAKGVVSLSEIEVALAK 301
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
VS T++SPA S T+V L
Sbjct: 302 DGVS---------STEISPAKEVALSPETEVAL 325
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1689 YSPTSPSYSPTSPGYSPGSPAYS 1711
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1689 YSPTSPSYSPTSPGYSPGSPAYS 1711
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit; AltName: Full=RNA polymerase II subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
Length = 1732
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 36.6 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
>gi|301754095|ref|XP_002912895.1| PREDICTED: microtubule-associated protein 4-like, partial
[Ailuropoda melanoleuca]
Length = 1022
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 64/153 (41%), Gaps = 20/153 (13%)
Query: 22 VFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYT--VSPAYTQVSPAYTQVSPAYTQV 79
V L + S I E R +ED + E EA V P T VS A V P T+V
Sbjct: 190 VTLAKDTESSIESE---RAIVEDMVLPRETEAASLKDAVLPTETVVSLAKDMVLPPETEV 246
Query: 80 SPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
+PA +P SP VSP V P +++PA VSL+ +V+LA
Sbjct: 247 APAKD-----VLPFKETER-ASPIKMDVSPVEGMVLPTDREIAPAKGVVSLSEIEVALAK 300
Query: 140 TQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
VS T++SPA S T+V L
Sbjct: 301 DGVS---------STEISPAKEVALSPETEVAL 324
>gi|302896526|ref|XP_003047143.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728071|gb|EEU41430.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 249
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 107 VSPAYTQVSPAYTQVSPA-----YTQVSLAY---TQVSLAYTQVSPAYTQVSPAYTQVSP 158
+ A ++ P +SPA +T LA +V+ QV P + QVSP + QVSP
Sbjct: 119 LDKAKSEGKPRGRDISPALKLWTFTCSILALIIPKKVTPTLFQVPPTFFQVSPTFFQVSP 178
Query: 159 AYTQVSSAYTQV 170
+ QVSS + QV
Sbjct: 179 TFFQVSSVFFQV 190
>gi|255951779|ref|XP_002566656.1| Pc23g00970 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211904277|emb|CAP79591.1| Pc23g00970 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 659
Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 50 EDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
E+E +V SPA A +SP Y P++ P++ P P+Y P P++ P
Sbjct: 381 ENETSVRYASPASHLTPLAVNPISPLYQPTVPSHIPTVPSFDPNLPSYHPTVPSFQPTLP 440
Query: 110 AYTQVSPAYTQVSP 123
+++ SP VSP
Sbjct: 441 SFSTSSPYTPTVSP 454
>gi|284504177|ref|YP_003406892.1| hypothetical protein MAR_ORF149 [Marseillevirus]
gi|282935615|gb|ADB03930.1| hypothetical protein MAR_ORF149 [Marseillevirus]
Length = 555
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 57 TVSPAYTQVSPAYTQVSPAYT-------QVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSP 109
TVS TQV+ +S T +V+ T +S + VS T V+ +S
Sbjct: 129 TVSGVQTQVTQNTADISALNTDLTTLEGEVATNTTDISALQLQVSTIQTQVNTNTLDISG 188
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
T V+ QV+ + TQVS + T V+ T +S T VS+ Q
Sbjct: 189 LQTNVTTLQGQVATNTLDIGTLQTQVSTNTLDIGTLQTDVAANTTNISALQTDVSTLQGQ 248
Query: 170 VILNKIRPG 178
V N + G
Sbjct: 249 VATNTLDIG 257
>gi|224118488|ref|XP_002317831.1| NAC domain protein, IPR003441 [Populus trichocarpa]
gi|222858504|gb|EEE96051.1| NAC domain protein, IPR003441 [Populus trichocarpa]
Length = 316
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 30 SYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA 89
+++L FK++D E S + DEA SP Q SP TQ T+ SPA T S
Sbjct: 152 AFVLCRLFKKQD-ESIESPNCDEAEATISSPTTAQSSPEVTQSDQPLTEASPANTTTSEV 210
Query: 90 YIPV 93
PV
Sbjct: 211 VAPV 214
>gi|215401987|gb|ACJ66593.1| RNA polymerase II [Plasmodium ovale]
Length = 168
Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 43 EDYLSTDEDEATVYTV-SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP-- 99
+++++ D Y V SP Y+ SP Y+ SP Y+ SP S P SP Y+P
Sbjct: 30 KNHITGDVHTNMKYNVMSPVYSVTSPKYSPTSPQYSPTSPVPNNPS---SPHSPHYSPYS 86
Query: 100 -VSPAYTQVSPAYTQVSPAYTQVSP 123
SP ++ SPAY+ SP Y + +P
Sbjct: 87 ITSPKFSPTSPAYSISSPVYDKNAP 111
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
[Takifugu rubripes]
Length = 1628
Score = 36.2 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSP-AYTQVSPA 110
SPA++ + PA + +SP Y P SPAY P SP YT SP
Sbjct: 1560 SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPG 1612
>gi|331219681|ref|XP_003322517.1| hypothetical protein PGTG_04054 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 678
Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 105 TQVSPA--YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
+Q+ PA YT+++ +T+++ +T+++ YT++++ +T+ YT+ + YT++ Y +
Sbjct: 286 SQLEPAKEYTELATEHTELATEHTELATDYTELAINHTEPVTEYTEPATDYTELVKDYME 345
Query: 163 VSSAYTQVILNKIRPGRES 181
+++ +++ P E
Sbjct: 346 LATDRMELVKEYTEPATED 364
>gi|304317963|ref|YP_003853108.1| RND family efflux transporter MFP subunit [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779465|gb|ADL70024.1| efflux transporter, RND family, MFP subunit [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 414
Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 71 QVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA---YTQVSPAYTQ 127
Q+ A ++ A Q A + + A V A +V+ A + A Y +V Y
Sbjct: 101 QLQQADASIAMANKQAEAAKVSIQAAQQNVEAAEIKVNSAKVSLDDAQKNYDRVKSLYDA 160
Query: 128 VSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + +Q+ A TQ+ A Q + A Q A TQV++A Q
Sbjct: 161 GAASQSQLDAADTQLKQAQNQYNAALNQYESAKTQVNNAQKQ 202
>gi|242003737|ref|XP_002422842.1| lipocalin-1 interacting membrane receptor, putative [Pediculus
humanus corporis]
gi|212505712|gb|EEB10104.1| lipocalin-1 interacting membrane receptor, putative [Pediculus
humanus corporis]
Length = 508
Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 18 IFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVS 59
IFL++F++L ++S+ ++ + +K+ E STD D+ VY +S
Sbjct: 21 IFLILFIVLYIISFTILGQLGKKEGEQCSSTDSDDVAVYNIS 62
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 36.2 bits (82), Expect = 9.4, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1541 YSPTSPSYSPTSPGYSPGSPAYS 1563
Score = 36.2 bits (82), Expect = 9.4, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1541 YSPTSPSYSPTSPGYSPGSPAYS 1563
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.129 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,607,395,240
Number of Sequences: 23463169
Number of extensions: 154728950
Number of successful extensions: 690783
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 1599
Number of HSP's that attempted gapping in prelim test: 621006
Number of HSP's gapped (non-prelim): 23659
length of query: 222
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 85
effective length of database: 9,144,741,214
effective search space: 777303003190
effective search space used: 777303003190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)