BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9982
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 91.3 bits (225), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
V+ Y +SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SP Y+ SP
Sbjct: 2279 VNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2338
Query: 118 YTQVSPAYTQVSLAYTQVS----LAYTQVSPAYTQVSPAYTQVSPAYTQ 162
Y+ SP Y+ S ++ Y+ SP ++ SPAY+ SP Y +
Sbjct: 2339 YSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDK 2387
Score = 79.3 bits (194), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA----YTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
SP+Y+ SP Y + Y+ SP V+ Y +SP Y+ SP Y+ SP Y+
Sbjct: 2248 SPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNVMSPVYSVTSPKYSPTSPKYSPT 2307
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSS 165
SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP ++S
Sbjct: 2308 SPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIAS 2358
Score = 73.9 bits (180), Expect = 7e-13, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 55 VYTVSPAYTQVSPA----YTQVSPAYTQVSPAYTQVSPAYIPVSPA----YTPVSPAYTQ 106
+Y+ +P SP + SP+Y+ SP Y + Y P SP V+ Y
Sbjct: 2226 IYSPNPMLDIFSPKPQINHNIYSPSYSPTSPTYNANNAYYSPTSPKNQNDQMNVNSQYNV 2285
Query: 107 VSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+SP Y+ SP Y+ SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S
Sbjct: 2286 MSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2345
Query: 167 YT 168
Y+
Sbjct: 2346 YS 2347
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 27/78 (34%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPA-----------YTQVSPAYIPVSPAYT--------- 98
SP Y+ SP Y+ SP Y+ SP Y+ SP + P SPAY+
Sbjct: 2329 SPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPAYSISSPVYDKS 2388
Query: 99 -------PVSPAYTQVSP 109
P+SPAY SP
Sbjct: 2389 GVVNAHQPMSPAYILQSP 2406
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1 (Fragment)
OS=Cricetulus griseus GN=POLR2A PE=3 SV=1
Length = 467
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 457
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPA 117
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP
Sbjct: 360 TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPK 419
Query: 118 YTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
Y+ SP Y+ S Y+ SP Y+ SP Y+ SPA
Sbjct: 420 YSPTSPTYSPTS----PKGSTYSPTSPGYSPTSPTYSLTSPA 457
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQV 135
YT SP Y+ SP Y P SP Y+P SP Y+ +P Y+ SP Y+ SP YT S Y+
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409
Query: 136 SLAYTQVSPAYTQVSPAYTQVSPA---YTQVSSAYTQV 170
S Y+ SP Y+ SP Y+ SP Y+ S Y+
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPT 447
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 398 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 457
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSAYT 168
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYT 161
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA +
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAIS 1962
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Query: 111 YT 112
+
Sbjct: 1961 IS 1962
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 62 YTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQV 121
YT SP Y+ SP Y+ SP Y+ SP Y P +P Y+P SP Y+ SP YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 122 SPAYTQVSLAYTQVSLAYTQVSPA---YTQVSPAYTQVSPAYTQVSSA 166
SP Y+ S Y+ S Y+ SP Y+ SP Y+ SP Y+ S A
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ +P Y+ SP Y P SP YTP SP Y+ SP Y+ SP Y
Sbjct: 1864 SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP Y+ S + Y+ SP Y+ SP Y+ SPA
Sbjct: 1924 SPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPA 1960
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQV 149
Y P SP Y+P SP Y+ SP Y+ SP Y+ +P Y+ S Y+ S YT SP Y+
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 150 SPAYTQVSPAYTQVSSAYT 168
SP Y+ SP Y+ S Y+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYS 1931
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 55 VYT-VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSPAYTQVSPA 110
VYT SP Y+ SP Y+ SP Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1901 VYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960
>sp|Q8R0T2|ZN768_MOUSE Zinc finger protein 768 OS=Mus musculus GN=Znf768 PE=2 SV=1
Length = 568
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP ++P SP + P SP SP + SP Y
Sbjct: 65 SPEFEPQSPEFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFESQSPKY 124
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
SP S S Y SP Y SP + SP Y S Y
Sbjct: 125 EPRSPGCHPRSPGCEPGSPRYEPKSPGYGSKSPEFESQSPGYESQSPGYEPQNSGDGVQN 184
Query: 179 RESNSRSSAYE---AFFHEWVWMSWYPDINPTLPIAMGVH 215
E + S +E + F E M P+ L I++GVH
Sbjct: 185 SEFKTHSPEFETQSSKFQEGAEMPLSPEEKNPLSISLGVH 224
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 92 PVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
P SP + P SP + SP + SP + SP + S + S SP + SP
Sbjct: 63 PQSPEFEPQSPEFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFESQSP 122
Query: 152 AYTQVSPA 159
Y SP
Sbjct: 123 KYEPRSPG 130
Score = 30.4 bits (67), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 99 PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P SP + SP + SP + SP + S + S + SP SP + SP
Sbjct: 63 PQSPEFEPQSPEFESQSPRFEPESPGFESRSPGFVPPSPEFAPRSPESDPQSPEFESQSP 122
Query: 159 AY 160
Y
Sbjct: 123 KY 124
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAY----------TQVSPAYIPVSPAYTPVSPAYTQVS 108
SP Y+ SP Y+ SP Y+ SP+Y + SP Y P SP+Y+P SP Y+ S
Sbjct: 1690 SPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTS 1749
Query: 109 PAYTQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P Y+ SP YT SP Y S A++ S Y+ SP Y+ SP+YT SP Y+ S Y
Sbjct: 1750 PQYSPSSPTYTPSSPTYNPTSPRAFS--SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTY 1807
Query: 168 T 168
T
Sbjct: 1808 T 1808
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 23/116 (19%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ-----------------VSPAYTQVSPAY 118
Y+ SP Y+ SP Y P SP Y+P SP+Y SP+Y+ SP Y
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQY 1745
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPA------YTQVSPAYTQVSPAYTQVSSAYT 168
+ SP Y+ S YT S Y SP Y+ SP Y+ SP+YT S Y+
Sbjct: 1746 SPTSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYS 1801
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
SP Y+ SP Y+ SP+YT SP Y+ SP Y P SPA P
Sbjct: 1776 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTP-SPADQP 1815
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA-------------YIPVSPAYTPVSPAYT 105
SP Y+ SP Y+ SP Y+ SP+Y Y P SP+Y+P SP Y+
Sbjct: 1690 SPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYS 1749
Query: 106 QVSPAYTQVSPAYTQVSPAYTQVS-LAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVS 164
SP Y+ SP YT SP Y S ++ S Y+ SP Y+ SP+YT SP Y+ S
Sbjct: 1750 PTSPQYSPSSPTYTPSSPTYNPTSPRGFS--SPQYSPTSPTYSPTSPSYTPSSPQYSPTS 1807
Query: 165 SAYT 168
YT
Sbjct: 1808 PTYT 1811
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA------YTPVSPAYTQVSPAYT 112
SP+Y+ SP Y+ SP Y+ SP YT SP Y P SP Y+P SP Y+ SP+YT
Sbjct: 1738 SPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYT 1797
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP 151
SP Y+ SP YT S Y+ SP Y+ SP
Sbjct: 1798 PSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSP 1836
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 61 AYTQVSPAYTQVSPA-YTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQ 106
A + +P+Y +SP Y+ SP ++ SP Y P SP+Y+P SPA Q
Sbjct: 1563 ALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQ 1609
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 56 YTVSPAYTQVSPAYTQVSPAYTQVSPAYTQV--SPAYIPVSPA--YTPVSPAYTQVSP-- 109
+ SP+ + SPA+ SP + V+P Y SP +SP ++P SP
Sbjct: 1492 FAGSPSNREFSPAH---SPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFN 1548
Query: 110 --AYTQVSP-----AYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQ 162
++ SP A + +P+Y +S Y+ SP ++ SP Y+ SP+Y+
Sbjct: 1549 EGGWSPASPGDPLGALSPRTPSYGGMSPG------VYSPSSPQFSMTSPHYSPTSPSYSP 1602
Query: 163 VSSAYTQ 169
S A Q
Sbjct: 1603 TSPAAGQ 1609
>sp|Q9H5H4|ZN768_HUMAN Zinc finger protein 768 OS=Homo sapiens GN=ZNF768 PE=1 SV=2
Length = 540
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP + SP + SP + SP + SP +P SP + P SP SP + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY---TQVILN 173
SP Y S Y S Y S Y + SP + SS + +++LN
Sbjct: 122 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSKFQEGAEMLLN 179
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 87 SPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
SP + P SP + P SP + SP + SP SP + S S + SP Y
Sbjct: 62 SPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQSPRY 121
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSAYEA---FFHEWVWMSWYPD 203
SP Y SP Y S Y E ++S +EA F E M P+
Sbjct: 122 EPQSPGYEPRSPGYEPRSPGYESESSRYESQNTELKTQSPEFEAQSSKFQEGAEMLLNPE 181
Query: 204 INPTLPIAMGVH 215
L I++GVH
Sbjct: 182 EKSPLNISVGVH 193
>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
Length = 5376
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQ 113
T T+S T VSP T + VS T VSP V P T ++ YT+V T+
Sbjct: 804 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTE 863
Query: 114 VSPAYTQ---VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
V+ +T+ VSP T V T +S T VSP T + VS T VS T V
Sbjct: 864 VTGVHTEVTNVSPEETSVPTEET-ISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSV 922
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQV 114
V VSP T V P +S T VSP T + VS T VSP T V P T +
Sbjct: 792 VTNVSPEETSV-PTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETIL 850
Query: 115 SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
+ YT+V T+V+ +T+V T VSP T V P +S T VS T +
Sbjct: 851 TTLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTL 901
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPV---SPAYTQVSPAY 111
V TVS T VSP T V P T ++ YT+V V+ +T V SP T V P
Sbjct: 826 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSV-PTE 884
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSP------AYTQVSPAYT 161
+S T VSP T + VS T VSP T V P T VSP T
Sbjct: 885 ETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTEITTVSPEET 940
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 52 EATVYTVSPAY-TQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
E T+YT P T+V+ +T+V T VSP T V P +S T VSP T +
Sbjct: 771 EITLYTEVPTVPTEVTGVHTEV----TNVSPEETSV-PTEETISTEVTTVSPEETTLPTE 825
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAY 167
VS T VSP T V T ++ YT+V T+V+ +T+ VSP T V +
Sbjct: 826 VPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEE 885
Query: 168 T 168
T
Sbjct: 886 T 886
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 24/147 (16%)
Query: 43 EDYLSTDEDEAT-VYTVSPAYTQV-------------SPA-----YTQVSPAYTQVSPAY 83
E + T+E +T V TVSP T V SP YT+V T+V+ +
Sbjct: 730 ETSVPTEETISTEVTTVSPEETTVPTEVPIVLIEATASPTGEITLYTEVPTVPTEVTGVH 789
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVS 143
T+V+ VSP T V P +S T VSP T + VS T VS T V
Sbjct: 790 TEVTN----VSPEETSV-PTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVP 844
Query: 144 PAYTQVSPAYTQVSPAYTQVSSAYTQV 170
P T ++ YT+V T+V+ +T+V
Sbjct: 845 PEETILTTLYTEVPTVPTEVTGVHTEV 871
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPV-------SPA-----YTPVSP 102
V VSP T V P +S T VSP T V P +P+ SP YT V
Sbjct: 723 VTNVSPEETSV-PTEETISTEVTTVSPEETTV-PTEVPIVLIEATASPTGEITLYTEVPT 780
Query: 103 AYTQVSPAYTQV----------------SPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY 146
T+V+ +T+V S T VSP T + VS T VSP
Sbjct: 781 VPTEVTGVHTEVTNVSPEETSVPTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEE 840
Query: 147 TQVSPAYTQVSPAYTQVSSAYTQV 170
T V P T ++ YT+V + T+V
Sbjct: 841 TSVPPEETILTTLYTEVPTVPTEV 864
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 58 VSPAYTQVSPAYT------QVSP----AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQV 107
VSP T + P T VSP + T+V+P T V+ AY+ + A SP T V
Sbjct: 609 VSPKETSIPPEVTIPTEVITVSPEEIISPTEVTPVPTDVTAAYVEATNA----SPEETSV 664
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAY 167
P T ++ T VSP T V T+V + + + T + YT+V T+V+ +
Sbjct: 665 PPEVTILTEV-TTVSPEETTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVH 720
Query: 168 TQV 170
T+V
Sbjct: 721 TEV 723
Score = 40.0 bits (92), Expect = 0.012, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 55 VYTVSPAYTQVSPAYTQVSPAYTQVSPAY---TQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
V TVSP +SP T+V+P T V+ AY T SP V P T ++ T VSP
Sbjct: 626 VITVSPEEI-ISP--TEVTPVPTDVTAAYVEATNASPEETSVPPEVTILTEV-TTVSPEE 681
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQ---VSPAYTQVSSAYT 168
T V T+V + + T + YT+V T+V+ +T+ VSP T V + T
Sbjct: 682 TTVP---TEVPIVLIEATAFPTGETTLYTEVPTVPTEVTGVHTEVTNVSPEETSVPTEET 738
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 54 TVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT- 112
T T+S T VSP T + VS T VSP V P T ++ T VSP T
Sbjct: 883 TEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILT-EITTVSPEETV 941
Query: 113 ---QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQ 169
+ + T+V +V+ T + T+V T+++ +T+V+ + + +S T+
Sbjct: 942 FPIEGTTLPTEVLTVPIEVTTFPTGETTVPTEVPTVSTEMTGVHTEVTTVFPEETSIPTE 1001
Query: 170 V 170
V
Sbjct: 1002 V 1002
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 63/151 (41%), Gaps = 37/151 (24%)
Query: 56 YTVSPAYTQVSPAYTQV-----------------------SPAYTQVSPAYTQVSPAYIP 92
Y+ SP Y+ SPAY+Q SP YT SP Y+ SP Y P
Sbjct: 1734 YSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSP 1793
Query: 93 VSPAY-------------TPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAY 139
SP Y +P Y+ SP Y+ Y+ S Y+ S YT + Y
Sbjct: 1794 TSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNY 1853
Query: 140 TQVSPAYTQVSPA-YTQVSPAYTQVSSAYTQ 169
+ SP Y+ +P+ Y+ SPAY+ S + +
Sbjct: 1854 SPTSPMYSPTAPSHYSPTSPAYSPSSPTFEE 1884
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYT-------------------- 98
SP+Y+ SP YT V+P+Y+ SP Y+ SP Y P SPAY+
Sbjct: 1710 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1768
Query: 99 ---PVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLA------YTQVSLAYTQVSP----- 144
P SP YT SP Y+ SP Y+ SP Y+ S Y+ Y+ SP
Sbjct: 1769 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPN 1828
Query: 145 ---------AYTQVSPAYTQVSPAYTQVSSAYT 168
Y+ SP YT + Y+ S Y+
Sbjct: 1829 MSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYS 1861
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 96 AYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQV------------- 142
Y+P SP+Y+ SP YT V+P+Y+ SP Y+ S Y+ S AY+Q
Sbjct: 1705 CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSP 1763
Query: 143 ----------SPAYTQVSPAYTQVSPAYTQVSSAY 167
SP YT SP Y+ SP Y+ S Y
Sbjct: 1764 PSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY 1798
>sp|O64220|VG26_BPMD2 Minor tail protein Gp26 OS=Mycobacterium phage D29 GN=26 PE=3 SV=3
Length = 837
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 63 TQVSPAYTQVSPAYTQVSPAY-TQVSPAYIPVSPAYTPV--------SPAYTQVSPAYTQ 113
TQ++P T ++PA+T ++ T ++ A + P T V + A + P
Sbjct: 376 TQLAPIITALTPAFTTLADTLGTMLTGALQALGPVLTVVAETLGTALTTALQAIQPMLPT 435
Query: 114 VSPAYTQVS--------PAYTQVSLAYTQVSLAYTQVS--------PAYTQVSPAYTQVS 157
+ ++ Q+S P Q+ A+ Q+ A Q++ PA+ + PA Q++
Sbjct: 436 LVDSFKQLSETLVTSLGPYLPQIGEAFGQIVGAVIQLAPTIISSLIPAFQTLIPAIAQLA 495
Query: 158 PAYTQVSSAYTQVI 171
P+ Q+ A+T+++
Sbjct: 496 PSLVQIVQAFTKLM 509
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 58 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIP-VSPAYTPVSPAYTQVSPAY-TQVS 115
++ A + P + ++ Q+S Y+P + A+ + A Q++P + +
Sbjct: 422 LTTALQAIQPMLPTLVDSFKQLSETLVTSLGPYLPQIGEAFGQIVGAVIQLAPTIISSLI 481
Query: 116 PAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKI 175
PA+ + PA Q++ + Q+ A+T++ P V ++ A Q ++ ++ I
Sbjct: 482 PAFQTLIPAIAQLAPSLVQIVQAFTKLMPVIVPVVQIVINLAAAVVQAGASIASFLIGGI 541
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans
GN=spt-5 PE=3 SV=3
Length = 1208
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYT-QVSPAYIP--VSPAYTPVSPAYTQVSPAYTQVS 115
+P Y +P Y +P Y ++PAY +PAY +PAY +PAY + + +
Sbjct: 808 TPMYGSKTPMYGAQTPMYGSMTPAYDGGRTPAYGEGGRTPAYGSKTPAYGDLDEHSSSRT 867
Query: 116 PAYTQVS---PAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVIL 172
PAY S PAY A T PAY T PAY + ++ T
Sbjct: 868 PAYGNDSSRTPAYGSADGART----------PAYGSTEGGRT---PAYGSMDNSRT---- 910
Query: 173 NKIRPGRESNSRSSAYEAF 191
P + + R+ YE+
Sbjct: 911 ----PAYDDSGRTPGYESM 925
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 68 AYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPA 103
Y+ SP Y+ SP Y+ SP Y P SP Y+P SPA
Sbjct: 1557 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1592
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 75 AYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPA 110
Y+ SP Y+ SP Y P SP Y+P SP Y+ SPA
Sbjct: 1557 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1592
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y+ SP Y+ SP Y+ SP Y+ SP Y P SPAY+P SP+Y+ SP+Y+ SP+Y+
Sbjct: 1557 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1616
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
SP+Y+ S +Y+ S +Y+ SPAY+ SPAY+ SPA
Sbjct: 1617 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1655
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
SP Y+ SP Y+ SP Y+ SP Y+ SPAY P SP+Y+P SP+Y+ SP+Y+ SP+Y
Sbjct: 1562 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1621
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPA 152
+ SP+Y+ S +Y+ S AY+ SPAY+ SPA
Sbjct: 1622 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1655
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 83 YTQVSPAYIPVSPAYTPVSPAYT 105
Y+ SP+Y P SP Y+P SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 90 YIPVSPAYTPVSPAYTQVSPAYT 112
Y P SP+Y+P SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 35.8 bits (81), Expect = 0.22, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTP 99
Y+ SP+Y+ SP Y P SPAY+P
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYSP 1719
Score = 34.3 bits (77), Expect = 0.62, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 97 YTPVSPAYTQVSPAYTQVSPAYT 119
Y+P SP+Y+ SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 104 YTQVSPAYTQVSPAYTQVSPAYT 126
Y+ SP+Y+ SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
Score = 30.8 bits (68), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 139 YTQVSPAYTQVSPAYTQVSPAYT 161
Y+ SP+Y+ SP Y+ SPAY+
Sbjct: 1696 YSPTSPSYSPTSPGYSPGSPAYS 1718
>sp|P53907|YNO4_YEAST Uncharacterized protein YNL144C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNL144C PE=4 SV=1
Length = 740
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 51 DEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSP-AYTPVSPAYTQVSP 109
D+ +Y + P Y P Y +P+ P Y P V P +YTP YT VS
Sbjct: 85 DKNVLYCIDP-YPVEPPCYDFANPSKVIRYPIYEHCRPCLTSVKPPSYTPSVEHYTVVSM 143
Query: 110 AYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
++SP S + L + + + + T+
Sbjct: 144 KMEKLSPFENASSRLWNNFILQINSTQINFYSIDDSLTR 182
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 111 YTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQV 170
Y +++ Y + Y ++SL Y + SL Y Q+ Y + Y ++ Y + Y ++
Sbjct: 1301 YNEMNIKYGDICVKYEEMSLTYKETSLKYEQIKVKYDEKCSQYDEIRFQYDEKCFQYDEI 1360
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=KAP123 PE=1 SV=1
Length = 1113
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 46 LSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPA---YIPVSPAYTPVSP 102
L+ ++DEAT + AY S +++ + + P Q PA ++P++ + +P
Sbjct: 962 LAAEDDEATREIIDRAYANASGCVARMALKNSALVP-LEQTVPALLAHLPLNTGFEEYNP 1020
Query: 103 AYTQVSPAYTQVSPAYTQVSPAYTQV 128
+ + Y + SP T +P ++
Sbjct: 1021 IFELIMKLYQENSPVITNETPRIIEI 1046
>sp|B1PS76|RDRP_LOLV RNA-directed RNA polymerase OS=Lolium latent virus (isolate
Lolium/USA/US1/-) GN=ORF1 PE=3 SV=1
Length = 1729
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 108 SPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAY-TQVSPAYTQVSPAYTQVSSA 166
SP T VSP P +L VS +VSPA+ Q+SP Q++ ++ +A
Sbjct: 643 SPRRTVVSPR----QPEAQNETLGRQIVS----RVSPAHGCQMSPYAAQLAHQLSE-QTA 693
Query: 167 YTQVILNKIRPGRESNSRSSAYEAFFHEWVWMSWYPDINPTLPIAMGV-----HC 216
YT VI ++ +SRS Y HE SW P I+ +L +A+G+ HC
Sbjct: 694 YTDVIGQRMVAFYSQHSRSYKYGR--HEHRSQSWLPVID-SLQVALGLDESYDHC 745
>sp|D3ZVV1|KHDC3_RAT KH domain-containing protein 3 OS=Rattus norvegicus GN=Khdc3 PE=3
SV=1
Length = 434
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Query: 24 LLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAY 83
+L NV + ++ +++ LE + E + S A TQ +P +V A TQV+P
Sbjct: 101 MLSNVAHFCRMKLMEKEALEAGV-----ERRLMAASKATTQPTP--VKVRDAATQVAP-- 151
Query: 84 TQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ---VSPAYTQVSLAYTQ---VSL 137
QV A I PA +V A TQV+P P QV A TQ V +
Sbjct: 152 VQVRDAAI---------QPAPVKVRDAATQVAPVQVHEVATQPVPVQVRDAATQPVPVRV 202
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIR 176
P +V A TQ P +V A TQ + ++R
Sbjct: 203 RDAATQPVPVRVRDAATQ--PVPVRVRDAATQPVPVRVR 239
>sp|Q68FE6|FA65A_MOUSE Protein FAM65A OS=Mus musculus GN=Fam65a PE=1 SV=2
Length = 1223
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 52 EATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAY 111
++T T SP ++ SP +T + +T VSP ++ SP + SP +T VSP T S +
Sbjct: 590 DSTQATPSPTHSTPSPTHTTIRLTHTTVSPTHSSPSPIHTTPSPTHTTVSPTCTTPSSGH 649
Query: 112 TQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+ SP TQ + T + A V P T SP T SP+
Sbjct: 650 STTSP--TQEAKMSTHTTGA----------VGPVQTTTSPISTTESPS 685
>sp|Q5HJU7|PLS_STAAC Putative surface protein SACOL0050 OS=Staphylococcus aureus (strain
COL) GN=SACOL0050 PE=4 SV=1
Length = 1548
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%)
Query: 40 KDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
K E+ T+E + +PA + S A T+ +P + S A T+ +P T
Sbjct: 177 KATEEAPKTEETDKATTEEAPAAEETSKAATEEAPKAEETSKAATEEAPKAEETEKTATE 236
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+P + T+ +P + S A T+ + + + T+ +PA + + A T+ +PA
Sbjct: 237 EAPKTEETDKVETEEAPKAEETSKAATEKAPKAEETNKVETEEAPAAEETNKAATEETPA 296
>sp|P80544|PLS_STAAU Surface protein OS=Staphylococcus aureus GN=pls PE=1 SV=2
Length = 1637
Score = 31.6 bits (70), Expect = 4.2, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%)
Query: 40 KDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTP 99
K E+ T+E + +PA + S A T+ +P + S A T+ +P T
Sbjct: 164 KATEEAPKTEETDKATTEEAPAAEETSKAATEEAPKAEETSKAATEEAPKAEETEKTATE 223
Query: 100 VSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+P + T+ +P + S A T+ + + + T+ +PA + + A T+ +PA
Sbjct: 224 EAPKTEETDKVETEEAPKAEETSKAATEKAPKAEETNKVETEEAPAAEETNKAATEETPA 283
>sp|Q4FZU8|FA65A_RAT Protein FAM65A OS=Rattus norvegicus GN=Fam65a PE=2 SV=2
Length = 1217
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 86 VSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPA 145
VSP + SP +T VSP+ +SP+ S +++ SP TQ + T + A V P
Sbjct: 611 VSPTHSTPSPTHTTVSPSNAALSPSNATPSLSHSTTSP--TQKATMSTHTTSA---VGPV 665
Query: 146 YTQVSPAYTQVSPA 159
T SP T VSP+
Sbjct: 666 QTTTSPISTTVSPS 679
>sp|Q5U405|TMPSD_MOUSE Transmembrane protease serine 13 OS=Mus musculus GN=Tmprss13 PE=2
SV=2
Length = 543
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 51 DEATVYTVSPAYT--QVSPAYTQVSPAYTQVSPAYT--QVSPAYIPVSPAYTPVSPAYTQ 106
D + SPA T Q SPA T + A Q SPA T Q SPA P P +P Q
Sbjct: 2 DRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPARTP--PQASPARAPPPQ 59
Query: 107 VSPAYTQVSPA 117
SPA + SPA
Sbjct: 60 ASPA--RASPA 68
>sp|Q8W257|PFI_PTIFI Polyenoic fatty acid isomerase OS=Ptilota filicina PE=1 SV=1
Length = 500
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 20/123 (16%)
Query: 16 VEIFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPA 75
+ IFL+ +L L++ D +D T+ V Y+ +S A+T V
Sbjct: 7 LHIFLIAYLACTALTH---------DFDD---------TIAVVGAGYSGLSAAFTLVKKG 48
Query: 76 YTQVSPAYTQVSPAYIPVSPAYTPVSP--AYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT 133
YT V +Q S Y V+ A ++PAY + A + + ++ +A
Sbjct: 49 YTNVEIYESQGEVGGYVYSVDYNNVAHDLATYALTPAYWKFQEAMKSIGVGFCELDVAIV 108
Query: 134 QVS 136
Q +
Sbjct: 109 QTN 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,393,580
Number of Sequences: 539616
Number of extensions: 3433795
Number of successful extensions: 15136
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 12138
Number of HSP's gapped (non-prelim): 1373
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)