Query psy9982
Match_columns 222
No_of_seqs 150 out of 167
Neff 3.9
Searched_HMMs 13730
Date Sat Aug 17 00:39:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9982.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9982hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 62.5 2.1 0.00016 26.1 2.2 24 5-28 4-27 (36)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 55.8 6.3 0.00046 27.4 4.1 26 16-41 34-59 (100)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 36.6 3.3 0.00024 28.7 -0.1 25 18-42 24-48 (91)
4 d3ehbb2 f.17.2.1 (B:1-107) Bac 32.9 23 0.0017 24.8 4.1 24 18-42 42-65 (107)
5 d2axti1 f.23.37.1 (I:1-35) Pho 29.6 24 0.0017 21.0 3.1 18 15-32 7-24 (35)
6 d2e74e1 f.23.24.1 (E:1-32) Pet 28.3 28 0.0021 20.1 3.1 17 10-26 2-18 (32)
7 d1v54b2 f.17.2.1 (B:1-90) Mito 21.9 35 0.0025 23.2 3.2 24 17-40 30-53 (90)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 20.4 69 0.0051 17.8 3.7 23 20-42 4-26 (27)
9 d1m56d_ f.23.8.1 (D:) Bacteria 20.3 23 0.0017 21.9 1.7 11 16-26 29-39 (42)
10 d1qled_ f.23.8.1 (D:) Bacteria 19.2 20 0.0014 22.4 1.2 11 16-26 30-40 (43)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=62.54 E-value=2.1 Score=26.11 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=16.8
Q ss_pred cchhhccchhhHHHHHHHHHHHHH
Q psy9982 5 DFLGLIGGTLTVEIFLLVFLLLNV 28 (222)
Q Consensus 5 ~~~~~~~~~~~~iI~lLLF~~LYi 28 (222)
..||+|...|+.+|=...-++|||
T Consensus 4 N~Lg~iAt~LFilvPt~FLliLyv 27 (36)
T d2axtm1 4 NQLGLIATALFVLVPSVFLIILYV 27 (36)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhe
Confidence 458888888877766555566665
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=55.76 E-value=6.3 Score=27.44 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q psy9982 16 VEIFLLVFLLLNVLSYILIEKFKRKD 41 (222)
Q Consensus 16 ~iI~lLLF~~LYi~Sy~ii~~fkk~~ 41 (222)
.++.+++++++|++-|+++++.+|++
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 34555555667777777775444443
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=36.59 E-value=3.3 Score=28.73 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q psy9982 18 IFLLVFLLLNVLSYILIEKFKRKDL 42 (222)
Q Consensus 18 I~lLLF~~LYi~Sy~ii~~fkk~~~ 42 (222)
+++++|+.+..+-..++.||||+++
T Consensus 24 i~~iv~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 24 LMLIVVIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp HTTTTTTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHHHHHHhhheeeeccCC
Confidence 4444455555555556677877665
No 4
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=32.94 E-value=23 Score=24.79 Aligned_cols=24 Identities=13% Similarity=0.175 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q psy9982 18 IFLLVFLLLNVLSYILIEKFKRKDL 42 (222)
Q Consensus 18 I~lLLF~~LYi~Sy~ii~~fkk~~~ 42 (222)
+.++++++.+++.|+++++ ||++.
T Consensus 42 ~~~I~~~V~~~~~~~~~~~-r~~~~ 65 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRF-NRRAN 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHS-BTTTS
T ss_pred HHHHHHHHHHHHHHHhhhh-hccCC
Confidence 3333444555666666654 54443
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.59 E-value=24 Score=21.05 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy9982 15 TVEIFLLVFLLLNVLSYI 32 (222)
Q Consensus 15 ~~iI~lLLF~~LYi~Sy~ 32 (222)
+.-++++.|+.|+|..++
T Consensus 7 ~Vy~vV~fFv~lFiFGFL 24 (35)
T d2axti1 7 TVYIVVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHhhc
Confidence 344777888888887775
No 6
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.33 E-value=28 Score=20.05 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=11.7
Q ss_pred ccchhhHHHHHHHHHHH
Q psy9982 10 IGGTLTVEIFLLVFLLL 26 (222)
Q Consensus 10 ~~~~~~~iI~lLLF~~L 26 (222)
|-|.|++|.|.-||.-+
T Consensus 2 ilgavfyivfialffgi 18 (32)
T d2e74e1 2 ILGAVFYIVFIALFFGI 18 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHH
Confidence 45788888777666443
No 7
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.91 E-value=35 Score=23.19 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q psy9982 17 EIFLLVFLLLNVLSYILIEKFKRK 40 (222)
Q Consensus 17 iI~lLLF~~LYi~Sy~ii~~fkk~ 40 (222)
++++++++++|++.+.+.++++.+
T Consensus 30 i~~~I~~~V~~~~~~~~~~~~~~~ 53 (90)
T d1v54b2 30 IVFLISSLVLYIISLMLTTKLTHT 53 (90)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 444555556666666665555443
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.43 E-value=69 Score=17.76 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q psy9982 20 LLVFLLLNVLSYILIEKFKRKDL 42 (222)
Q Consensus 20 lLLF~~LYi~Sy~ii~~fkk~~~ 42 (222)
-|+|++|=-+-|+--.+|||..|
T Consensus 4 gli~~tl~glf~aayqqykrpne 26 (27)
T d2e74g1 4 GLVFATLGGLFYAAYQQYKRPNE 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCC
T ss_pred eehHHHHHHHHHHHHHHhcCCCC
Confidence 35666666677777888888765
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.34 E-value=23 Score=21.95 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=6.6
Q ss_pred HHHHHHHHHHH
Q psy9982 16 VEIFLLVFLLL 26 (222)
Q Consensus 16 ~iI~lLLF~~L 26 (222)
.||++|+|+.+
T Consensus 29 ~~i~~liflAi 39 (42)
T d1m56d_ 29 VIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34666666655
No 10
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=19.25 E-value=20 Score=22.39 Aligned_cols=11 Identities=55% Similarity=0.809 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q psy9982 16 VEIFLLVFLLL 26 (222)
Q Consensus 16 ~iI~lLLF~~L 26 (222)
.||++|+|+.+
T Consensus 30 ~~i~~liflAi 40 (43)
T d1qled_ 30 LSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34666666654
Done!