RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9982
(222 letters)
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 54.2 bits (129), Expect = 1e-08
Identities = 29/108 (26%), Positives = 36/108 (33%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA +PA PA +PA +PA PA PA PA PA
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
PA A + A +PA +PA PA A
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPA 328
Score = 53.8 bits (128), Expect = 1e-08
Identities = 29/108 (26%), Positives = 35/108 (32%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA PA +PA +PA PA PA PA PA PA
Sbjct: 228 APAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 287
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
PA + A + A +PA PA PA A
Sbjct: 288 AAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335
Score = 52.3 bits (124), Expect = 4e-08
Identities = 29/108 (26%), Positives = 34/108 (31%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
PA +PA +PA PA PA PA PA PA PA
Sbjct: 235 PPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 294
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
+PA + A + A PA PA PA A
Sbjct: 295 AAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPA 342
Score = 51.1 bits (121), Expect = 1e-07
Identities = 32/138 (23%), Positives = 47/138 (34%), Gaps = 4/138 (2%)
Query: 35 EKFKRKDLEDYLSTDEDEATVYTVSPAYTQ----VSPAYTQVSPAYTQVSPAYTQVSPAY 90
E+ +R+D + + A +P+ + +PA +PA PA +PA
Sbjct: 186 ERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAK 245
Query: 91 IPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVS 150
+PA PA PA PA PA A A +PA +
Sbjct: 246 AAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAA 305
Query: 151 PAYTQVSPAYTQVSSAYT 168
PA +PA A
Sbjct: 306 PAKAAAAPAKAAAPPAKA 323
Score = 50.7 bits (120), Expect = 1e-07
Identities = 27/100 (27%), Positives = 32/100 (32%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
+PA PA PA PA PA PA PA +PA +PA
Sbjct: 249 APAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAK 308
Query: 119 TQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
+PA A A PA PA +P
Sbjct: 309 AAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 33.5 bits (76), Expect = 0.086
Identities = 28/118 (23%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 60 PAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYT 119
PA A PA S A + A P A PA A PA
Sbjct: 42 PAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVA 101
Query: 120 QVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAY----TQVSSAYTQVILN 173
A + A S A +PA S A + PA + AYT+ + +
Sbjct: 102 PQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRSMEH 159
Score = 30.1 bits (67), Expect = 0.98
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 6/114 (5%)
Query: 59 SPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAY 118
A + PA A PA A A S A +PA S A
Sbjct: 76 PAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAAS 135
Query: 119 TQVSPAY----TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVS-PAYTQVSSAY 167
+ PA + AYT+ S+ + + Q P + + P Y Q+ +
Sbjct: 136 KKPDPAAHTQHSPPPFAYTR-SMEHIACTHGGIQFIPYFHKFILPCYLQIFTGQ 188
Score = 29.3 bits (65), Expect = 1.7
Identities = 24/101 (23%), Positives = 29/101 (28%)
Query: 66 SPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAY 125
S A + PA A PA P S A A A + PA A
Sbjct: 34 SAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAAS 93
Query: 126 TQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
A A + A S A +PA S+A
Sbjct: 94 RAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAA 134
>gnl|CDD|116725 pfam08135, EPV_E5, Major transforming protein E5 family. This
family consists of the major transforming proteins (E5)
of the bovine papilloma virus (BPV). The equine sarcoid
is one of the most common dermatological lesion in
equids. It is a benign, locally invasive dermal
fibroblastic lesion and studies have shown an
association of the lesions with BPV. E5 is a short
hydrophobic membrane protein localising to the Golgi
apparatus and other intracellular membranes. It binds
to and constitutively activates the platelet-derived
growth factor-beta in transformed cells. This
stimulation activates a receptor signaling cascade
which results in an intracellular growth stimulatory
signal.
Length = 44
Score = 27.8 bits (62), Expect = 0.55
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1 MFTPDFLGLIGGTLTVEIFLLVFLLLNVLSY 31
M L +G T +++ LLVFLL L +
Sbjct: 1 MPNLGLLLFLGLTFAMQLLLLVFLLFFFLVW 31
>gnl|CDD|222253 pfam13597, NRDD, Anaerobic ribonucleoside-triphosphate reductase.
Length = 542
Score = 30.2 bits (69), Expect = 0.84
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 36 KFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPA 68
+ +KD + ++ T P +
Sbjct: 402 RLAKKDKKRFIIQPRTYYTNSFHVPVDAPIDLF 434
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
Members of this protein family have a novel N-terminal
domain, a single predicted membrane-spanning helix, and
a predicted cystosolic histidine kinase domain. We
designate this protein PrsK, and its companion
DNA-binding response regulator protein (TIGR02915) PrsR.
These predicted signal-transducing proteins appear to
enable enhancer-dependent transcriptional activation.
The prsK gene is often associated with exopolysaccharide
biosynthesis genes [Protein fate, Protein and peptide
secretion and trafficking, Signal transduction,
Two-component systems].
Length = 679
Score = 30.1 bits (68), Expect = 0.90
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 1 MFTPDFLG--LIGGTLTVEIFLLVFLLLNVLSYILIEKFKR 39
+ PD L+ + FLL FLLL V+ +L+E+ R
Sbjct: 112 LVMPDLAPEDLLFALWSRNYFLLGFLLLAVIGLVLVEQLYR 152
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 29.8 bits (68), Expect = 1.1
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 61 AYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQ 120
Y VSPAY+ VS + ++ ++P + + A V PA +V A
Sbjct: 120 PYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDG-AAFARALAAVVPADVEVV-AVRG 177
Query: 121 VSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSP 158
P A +L T + A V A+ V P
Sbjct: 178 AVPGRAATPFA----ALLATPPTAA---VDAAHAAVGP 208
Score = 27.2 bits (61), Expect = 8.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
S+ + ++LA Y VSPAY+ VS + ++ +L + PG
Sbjct: 104 SIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRH-----VLELLTPG 148
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 29.8 bits (67), Expect = 1.3
Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 67 PAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYT 126
PA P SP +P+ P + A + P A +P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA----TPPPVPPRPVAP 419
Query: 127 QVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSA 166
V P P YT +P + +
Sbjct: 420 PVPHTPESAPKLTRAAIPV--DEKPKYTPPAPPKEEEKAL 457
Score = 29.0 bits (65), Expect = 2.2
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 5/78 (6%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAY---IPVSPAYTPVSPAYTQVSP 109
T SP +P+ + A + P A +P P PV
Sbjct: 371 PTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPK 430
Query: 110 AYTQVSPAYTQVSPAYTQ 127
P P YT
Sbjct: 431 LTRAAIPV--DEKPKYTP 446
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.4 bits (66), Expect = 1.6
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 79 VSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYT-QVSL 137
+ P +TQ + A P + A SP+ + + + A TQ + VS+ V +
Sbjct: 379 IKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSA-TQPAGTPPTVSVDPPAAVPV 437
Query: 138 AYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNS 183
+P + + + ++VSS L I+ E +
Sbjct: 438 NPPSTAPQAVRPAQFKEEKKIPVSKVSSL-GPSTLRPIQEKAEQAT 482
Score = 28.2 bits (63), Expect = 4.4
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 57 TVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYTQVSP 116
+ P +TQ PA A SP+ +Q S A + P + P
Sbjct: 378 HIKPVFTQ--PAAAPQPSAAAAASPSPSQSS--AAAQPSAPQSATQPAGT-PPTVSVDPP 432
Query: 117 AYTQVSPAYT 126
A V+P T
Sbjct: 433 AAVPVNPPST 442
>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein. Members of this
family are integral membrane proteins that are around
500 residues in length. LMBR1 is not involved in
preaxial polydactyly, as originally thought. Vertebrate
members of this family may play a role in limb
development. A member of this family has been shown to
be a lipocalin membrane receptor.
Length = 419
Score = 28.2 bits (63), Expect = 3.9
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 18 IFLLVFLLLNVLSYILIEKFKRKD 41
I LL+F++L +LSYIL+ ++KR D
Sbjct: 1 ILLLLFVILYLLSYILLYRYKRPD 24
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 28.1 bits (63), Expect = 4.2
Identities = 21/107 (19%), Positives = 32/107 (29%)
Query: 53 ATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPAYTPVSPAYTQVSPAYT 112
T A +P + +PA +PA P + PV+ A
Sbjct: 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438
Query: 113 QVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQVSPAYTQVSPA 159
+PA ++PA + T PA +PA A
Sbjct: 439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAA 485
>gnl|CDD|181180 PRK07952, PRK07952, DNA replication protein DnaC; Validated.
Length = 244
Score = 27.8 bits (62), Expect = 4.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 162 QVSSAYTQVILNKIRPGRESNSRSS 186
Q S Y +VI+N+I R S+ R +
Sbjct: 174 QTESRYEKVIINQIVDRRSSSKRPT 198
>gnl|CDD|185087 PRK15133, PRK15133, microcin C ABC transporter permease YejB;
Provisional.
Length = 364
Score = 27.8 bits (62), Expect = 4.4
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 16/58 (27%)
Query: 1 MFTPDFLGLIGGTLTVE-----------IFLLVFLLLNVLS---YILIEKFKRKDLED 44
MF+ + LGL+G TV IF L+ LLLN++S Y L++ R D E
Sbjct: 308 MFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVD--PRIDFEG 363
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 27.9 bits (63), Expect = 5.5
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 89 AYIPVSPAYTPVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSLAYTQVSLAYTQVSPAYTQ 148
A+ P +P P P +PA + + A + A Q + A Q
Sbjct: 358 AFHPAAPLPEPEVPP-QSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAV--P 414
Query: 149 VSPAYTQVSPAYTQVSSAYTQVILNKIRPGRESNSRSSA 187
+ +Q+ A Q+ A K P S +R
Sbjct: 415 LPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVN 453
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 27.6 bits (62), Expect = 5.7
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 129 SLAYTQVSLAYTQVSPAYTQVSPAYTQVSPAYTQVSSAYTQVILNKIRPG 178
S+ + ++LA VSPAY+ +S + ++ + I + + PG
Sbjct: 60 SIEHALLALAAMYAGVPVAPVSPAYSLLSKDFAKL-----RHIFDLLTPG 104
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 27.4 bits (61), Expect = 6.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 34 IEKFKRKDLEDYLSTDEDEATVYTVSPAYTQVSPAYTQVSPA 75
+EK ++ DLED++ +A ++ P V PA V+PA
Sbjct: 450 LEKTRKLDLEDWMDGLGLDAVLF---PTVADVGPADADVNPA 488
>gnl|CDD|179732 PRK04056, PRK04056, Maf-like protein; Reviewed.
Length = 180
Score = 26.8 bits (60), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 23 FLLLNVLSYILIEKFKRKDLEDYLSTDE 50
+L L+V +Y +KF DLE YL +
Sbjct: 114 WLDLSVTTYRF-KKFDEDDLEKYLESGL 140
>gnl|CDD|181875 PRK09459, pspG, phage shock protein G; Reviewed.
Length = 76
Score = 25.3 bits (56), Expect = 7.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 7 LGLIGGTLTVEIFLLVFLLLNVLSYILIEKFKRKDLEDY 45
+ +GG + I LL +LLL V+ +I K + Y
Sbjct: 34 VMFLGGMFALMIKLLPWLLLAVVVVWVIRAIKAPKVPRY 72
>gnl|CDD|148567 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip). This
family consists of several Rab5-interacting protein
(RIP5 or Rab5ip) sequences. The ras-related GTPase rab5
is rate-limiting for homotypic early endosome fusion.
Rab5ip represents a novel rab5 interacting protein that
may function on endocytic vesicles as a receptor for
rab5-GDP and participate in the activation of rab5.
Length = 81
Score = 25.2 bits (56), Expect = 9.0
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 6 FLGLIGGTLTVE---IFLLVFLLLNVLSYILIEKFKRKDLEDYLSTDE 50
G+I G L + F+ FL+ SY+ K + D E + E
Sbjct: 13 LAGVIAGILGLTGFLGFIFYFLISLGTSYLYYAKVGKIDEEYFGGRWE 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.129 0.381
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,016,921
Number of extensions: 969105
Number of successful extensions: 1476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1360
Number of HSP's successfully gapped: 84
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)