RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9982
         (222 letters)



>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus
           thermophilus [TaxId: 274]}
          Length = 298

 Score = 26.0 bits (56), Expect = 3.4
 Identities = 12/52 (23%), Positives = 17/52 (32%)

Query: 45  YLSTDEDEATVYTVSPAYTQVSPAYTQVSPAYTQVSPAYTQVSPAYIPVSPA 96
             S    E TVY    A      A+ ++ P   +       V    IP+ P 
Sbjct: 235 IASERLSEETVYKFMKAVFGNLEAFKKIHPNLERFFGLEKAVKGLPIPLHPG 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,436
Number of extensions: 33427
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)