BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9984
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 70.5 bits (171), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 66 QEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTH 125
Q IFRIL+ ILHLGN++F+ D+DSC+I P L FCD++ +D +E L H
Sbjct: 322 QMGIFRILAGILHLGNVEFAS---RDSDSCAIPPKHDPLTIFCDLM-GVDYEEMAHWLCH 377
Query: 126 RKITTMQESFNKPMS 140
RK+ T E++ KP+S
Sbjct: 378 RKLATATETYIKPIS 392
Score = 39.7 bits (91), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+VRF IYTYCG
Sbjct: 82 EPAVLHNLKVRFIDSKLIYTYCG 104
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 70.5 bits (171), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 66 QEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTH 125
Q IFRIL+ ILHLGN++F+ D+DSC+I P L FCD++ +D +E L H
Sbjct: 322 QMGIFRILAGILHLGNVEFAS---RDSDSCAIPPKHDPLTIFCDLM-GVDYEEMAHWLCH 377
Query: 126 RKITTMQESFNKPMS 140
RK+ T E++ KP+S
Sbjct: 378 RKLATATETYIKPIS 392
Score = 39.7 bits (91), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+VRF IYTYCG
Sbjct: 82 EPAVLHNLKVRFIDSKLIYTYCG 104
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 70.5 bits (171), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 66 QEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTH 125
Q IFRIL+ ILHLGN++F+ D+DSC+I P L FCD++ +D +E L H
Sbjct: 322 QMGIFRILAGILHLGNVEFAS---RDSDSCAIPPKHDPLTIFCDLM-GVDYEEMAHWLCH 377
Query: 126 RKITTMQESFNKPMS 140
RK+ T E++ KP+S
Sbjct: 378 RKLATATETYIKPIS 392
Score = 39.7 bits (91), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+VRF IYTYCG
Sbjct: 82 EPAVLHNLKVRFIDSKLIYTYCG 104
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 337 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 393
Query: 127 KITT 130
+ T
Sbjct: 394 VMLT 397
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 42.4 bits (98), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 337 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 393
Query: 127 KITT 130
+ T
Sbjct: 394 VMLT 397
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 336 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 392
Query: 127 KITT 130
+ T
Sbjct: 393 VMLT 396
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 336 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 392
Query: 127 KITT 130
+ T
Sbjct: 393 VMLT 396
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 336 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 392
Query: 127 KITT 130
+ T
Sbjct: 393 VMLT 396
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 346 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 402
Query: 127 KITT 130
+ T
Sbjct: 403 VMLT 406
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 310 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 366
Query: 127 KITT 130
+ T
Sbjct: 367 VMLT 370
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 311 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 367
Query: 127 KITT 130
+ T
Sbjct: 368 VMLT 371
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 310 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 366
Query: 127 KITT 130
+ T
Sbjct: 367 VMLT 370
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 334 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 390
Query: 127 KITT 130
+ T
Sbjct: 391 VMLT 394
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 346 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 402
Query: 127 KITT 130
+ T
Sbjct: 403 VMLT 406
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 69 IFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHR 126
+FR+++ +LHLGNI F +G + G C++ S +C L +D+D+ R LT R
Sbjct: 333 LFRVVAGVLHLGNIDFEEAGSTSG---GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 389
Query: 127 KITT 130
+ T
Sbjct: 390 VMLT 393
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 40.8 bits (94), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 65 DQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPS-SGSLAAFCDILYNIDRDEFRRCL 123
DQ I+RIL++ILH+GNI F+ + T + ++ S + SLAA L D+ L
Sbjct: 262 DQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCL-KTDQQSLSIAL 320
Query: 124 THRKITT 130
+R I+T
Sbjct: 321 CYRSIST 327
Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQE 67
G DQ I+RIL++ILH+GNI F+ + T + + D +
Sbjct: 257 GLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTK 300
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 40.8 bits (94), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 65 DQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPS-SGSLAAFCDILYNIDRDEFRRCL 123
DQ I+RIL++ILH+GNI F+ + T + ++ S + SLAA L D+ L
Sbjct: 262 DQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCL-KTDQQSLSIAL 320
Query: 124 THRKITT 130
+R I+T
Sbjct: 321 CYRSIST 327
Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQE 67
G DQ I+RIL++ILH+GNI F+ + T + + D +
Sbjct: 257 GLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTK 300
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 31.2 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 334 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 331 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 98 EPAVFHNLRVRYNQ-DLIYTYSGL 120
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 334 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 331 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 98 EPAVFHNLRVRYNQ-DLIYTYSGL 120
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 31.2 bits (69), Expect = 0.24, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 346 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 343 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 110 EPAVFHNLRVRYNQ-DLIYTYSGL 132
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 346 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 343 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 110 EPAVFHNLRVRYNQ-DLIYTYSGL 132
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 335 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 332 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 363
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 99 EPAVFHNLRVRYNQ-DLIYTYSGL 121
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 334 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 331 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 98 EPAVFHNLRVRYNQ-DLIYTYSGL 120
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 334 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 331 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 98 EPAVFHNLRVRYNQ-DLIYTYSGL 120
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 346 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 343 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 110 EPAVFHNLRVRYNQ-DLIYTYSGL 132
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 346 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 343 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 374
Score = 30.8 bits (68), Expect = 0.25, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 110 EPAVFHNLRVRYNQ-DLIYTYSGL 132
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 334 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 331 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 30.8 bits (68), Expect = 0.26, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 98 EPAVFHNLRVRYNQ-DLIYTYSGL 120
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGS 52
GFS +Q IF+I++ ILHLGNI+F G+
Sbjct: 334 GFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGS 88
D FS +Q IF+I++ ILHLGNI+F G+
Sbjct: 331 DIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA 362
Score = 30.8 bits (68), Expect = 0.26, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAV +NL+VR+ Q + IYTY G
Sbjct: 98 EPAVFHNLRVRYNQ-DLIYTYSGL 120
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 33 IFRILSSILHL-GNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGD 91
IF + + H+ G G+ GD +F +DQ + + + + NI GGS G+
Sbjct: 149 IFDAMFPVTHIAGETVIQQGNEGD----NFYVVDQGEV-DVYVNGEWVTNIS-EGGSFGE 202
Query: 92 TDSCSIAPSSGSLAAFCDI-LYNIDRDEFRRCL---THRKITTMQESFNKPMSVFE 143
P + ++ A D+ L+ IDRD +RR L T RK M E F +S+ E
Sbjct: 203 LALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRK-RKMYEEFLSKVSILE 257
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 33.9 bits (76), Expect = 0.037, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 21 TYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEV 68
T GF+ +Q I R++SS+L LGNI F + D S + Q+V
Sbjct: 339 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386
Score = 33.5 bits (75), Expect = 0.042, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +Q I R++SS+L LGNI F +TD S+ P + + C ++ I+ +F
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVFK--KERNTDQASM-PDNTAAQKVCHLM-GINVTDFT 398
Query: 121 RCLTHRKITTMQESFNKPMS 140
R + +I ++ K +
Sbjct: 399 RSILTPRIKVGRDVVQKAQT 418
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 33.9 bits (76), Expect = 0.037, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 21 TYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEV 68
T GF+ +Q I R++SS+L LGNI F + D S + Q+V
Sbjct: 339 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386
Score = 33.5 bits (75), Expect = 0.042, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +Q I R++SS+L LGNI F +TD S+ P + + C ++ I+ +F
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVFK--KERNTDQASM-PDNTAAQKVCHLM-GINVTDFT 398
Query: 121 RCLTHRKITTMQESFNKPMS 140
R + +I ++ K +
Sbjct: 399 RSILTPRIKVGRDVVQKAQT 418
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 33.9 bits (76), Expect = 0.037, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 21 TYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEV 68
T GF+ +Q I R++SS+L LGNI F + D S + Q+V
Sbjct: 339 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386
Score = 33.5 bits (75), Expect = 0.042, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +Q I R++SS+L LGNI F +TD S+ P + + C ++ I+ +F
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVFK--KERNTDQASM-PDNTAAQKVCHLM-GINVTDFT 398
Query: 121 RCLTHRKITTMQESFNKPMS 140
R + +I ++ K +
Sbjct: 399 RSILTPRIKVGRDVVQKAQT 418
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 33.9 bits (76), Expect = 0.037, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 21 TYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEV 68
T GF+ +Q I R++SS+L LGNI F + D S + Q+V
Sbjct: 339 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386
Score = 33.5 bits (75), Expect = 0.042, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +Q I R++SS+L LGNI F +TD S+ P + + C ++ I+ +F
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVFK--KERNTDQASM-PDNTAAQKVCHLM-GINVTDFT 398
Query: 121 RCLTHRKITTMQESFNKPMS 140
R + +I ++ K +
Sbjct: 399 RSILTPRIKVGRDVVQKAQT 418
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 33.9 bits (76), Expect = 0.037, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 21 TYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEV 68
T GF+ +Q I R++SS+L LGNI F + D S + Q+V
Sbjct: 339 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386
Score = 33.5 bits (75), Expect = 0.042, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +Q I R++SS+L LGNI F +TD S+ P + + C ++ I+ +F
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVFK--KERNTDQASM-PDNTAAQKVCHLM-GINVTDFT 398
Query: 121 RCLTHRKITTMQESFNKPMS 140
R + +I ++ K +
Sbjct: 399 RSILTPRIKVGRDVVQKAQT 418
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 33.9 bits (76), Expect = 0.037, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 21 TYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEV 68
T GF+ +Q I R++SS+L LGNI F + D S + Q+V
Sbjct: 339 TIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKV 386
Score = 33.5 bits (75), Expect = 0.042, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +Q I R++SS+L LGNI F +TD S+ P + + C ++ I+ +F
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVFK--KERNTDQASM-PDNTAAQKVCHLM-GINVTDFT 398
Query: 121 RCLTHRKITTMQESFNKPMS 140
R + +I ++ K +
Sbjct: 399 RSILTPRIKVGRDVVQKAQT 418
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 85 SGGSHGDTDSCSIAPSSGSLAAFCDI-LYNIDRDEFRRCL---THRKITTMQESFNKPMS 140
GGS G+ P + ++ A ++ L+ IDRD +RR L T RK M E F +S
Sbjct: 101 EGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK-RKMYEEFLSKVS 159
Query: 141 VFE 143
+ E
Sbjct: 160 ILE 162
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 85 SGGSHGDTDSCSIAPSSGSLAAFCDI-LYNIDRDEFRRCL---THRKITTMQESFNKPMS 140
GGS G+ P + ++ A ++ L+ IDRD +RR L T RK M E F +S
Sbjct: 103 EGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK-RKMYEEFLSKVS 161
Query: 141 VFE 143
+ E
Sbjct: 162 ILE 164
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 85 SGGSHGDTDSCSIAPSSGSLAAFCDI-LYNIDRDEFRRCL---THRKITTMQESFNKPMS 140
GGS G+ P + ++ A ++ L+ IDRD +RR L T RK M E F +S
Sbjct: 105 EGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRK-RKMYEEFLSKVS 163
Query: 141 VFE 143
+ E
Sbjct: 164 ILE 166
>pdb|4H3Y|A Chain A, Crystal Structure Of An Asymmetric Dimer Of A Trna
(Guanine-(N(1)-)- Methyltransferase From Burkholderia
Phymatum Bound To S-Adenosyl Homocystein In One
Half-Site
pdb|4H3Y|B Chain B, Crystal Structure Of An Asymmetric Dimer Of A Trna
(Guanine-(N(1)-)- Methyltransferase From Burkholderia
Phymatum Bound To S-Adenosyl Homocystein In One
Half-Site
pdb|4H3Z|A Chain A, Crystal Structure Of A Symmetric Dimer Of A Trna
(Guanine-(N(1)-)- Methyltransferase From Burkholderia
Phymatum Bound To S-Adenosyl Homocystein In Both
Half-Sites
pdb|4H3Z|B Chain B, Crystal Structure Of A Symmetric Dimer Of A Trna
(Guanine-(N(1)-)- Methyltransferase From Burkholderia
Phymatum Bound To S-Adenosyl Homocystein In Both
Half-Sites
Length = 276
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1 PEPAVLYNLQV-RFCQHNAIYTYCG-FSALDQEVIFRILSSILHLGNIQFSGGS 52
P+ A L + +V RF + CG + A+DQ +I R++ + LG+ SGG
Sbjct: 114 PQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGE 167
>pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|B Chain B, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|C Chain C, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181.
pdb|1YDO|D Chain D, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase,
Northeast Structural Genomics Target Sr181
Length = 307
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 87 GSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHRKITT----MQESFNKPM 139
GS G C AP S AA DI+Y +++ + + + K+ + ++E KP+
Sbjct: 232 GSAGGLGGCPYAPGSSGNAATEDIVYXLEQXDIKTNVKLEKLLSAAKWIEEKXGKPL 288
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 29.3 bits (64), Expect = 0.78, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GFSA ++ I+++ +++H GN++F
Sbjct: 339 GFSADEKTAIYKLTGAVMHYGNLKF 363
Score = 29.3 bits (64), Expect = 0.86, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAVLYNL+ R+ IYTY G
Sbjct: 96 EPAVLYNLKERYAAW-MIYTYSGL 118
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDR 116
D FSA ++ I+++ +++H GN++F + P +A L ++
Sbjct: 336 DILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREE----QAEPDGTEVADKAAYLMGLNS 391
Query: 117 DEFRRCLTHRKITTMQESFNKPMSVFEM 144
E + L + ++ E K +V ++
Sbjct: 392 AELLKALCYPRVKVGNEFVTKGQTVSQV 419
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAVLYNL+ R+ IYTY G
Sbjct: 98 EPAVLYNLKDRYGSW-MIYTYSGL 120
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAVLYNL R+ IYTY G
Sbjct: 99 EPAVLYNLXERYAAW-MIYTYSGL 121
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GFSA + I+ + +++H GN++F
Sbjct: 342 GFSADEXTAIYXLTGAVMHYGNLKF 366
Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDR 116
D FSA + I+ + +++H GN++F + P +A L ++
Sbjct: 339 DILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREE----QAEPDGTEVADXAAYLMGLNS 394
Query: 117 DEFRRCLTHRKITTMQESFNKPMSVFEM 144
E + L + ++ E+ +V E+
Sbjct: 395 AELLKALCYPRVGVGNEAVTXGETVSEV 422
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCGF 25
EPAVLYNL R+ IYTY G
Sbjct: 96 EPAVLYNLXERYAAW-MIYTYSGL 118
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GFSA + I+ + +++H GN++F
Sbjct: 339 GFSADEXTAIYXLTGAVMHYGNLKF 363
Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDR 116
D FSA + I+ + +++H GN++F + P +A L ++
Sbjct: 336 DILGFSADEXTAIYXLTGAVMHYGNLKFXQXQREE----QAEPDGTEVADXAAYLMGLNS 391
Query: 117 DEFRRCLTHRKITTMQESFNKPMSVFEM 144
E + L + ++ E+ +V E+
Sbjct: 392 AELLKALCYPRVGVGNEAVTXGETVSEV 419
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GF+ +++ +F+ +SILH+G ++F
Sbjct: 339 GFTKEEKQSMFKCTASILHMGEMKF 363
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GF+ +++ +F+ +SILH+G ++F
Sbjct: 339 GFTKEEKQSMFKCTASILHMGEMKF 363
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GF+ +++ +F+ +SILH+G ++F
Sbjct: 339 GFTKEEKQSMFKCTASILHMGEMKF 363
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GF+ +++ +F+ +SILH+G ++F
Sbjct: 335 GFTKEEKQSMFKCTASILHMGEMKF 359
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GF+ +++ +F+ +SILH+G ++F
Sbjct: 334 GFTKEEKQSMFKCTASILHMGEMKF 358
>pdb|4FTD|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03550)
From Bacteroides Eggerthii Dsm 20697 At 1.91 A
Resolution
Length = 453
Score = 26.2 bits (56), Expect = 7.7, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 37/97 (38%)
Query: 41 LHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPS 100
+++GNI +G HGD S + IF ++ + SG D + + PS
Sbjct: 233 INVGNIPGAGNRHGDNASYNIDENGNGFIFFGDNAATEFLKVPISGHKTVDIGNIKVLPS 292
Query: 101 SGSLAAFCDILYNIDRDEFRRCLTHRKITTMQESFNK 137
++ D D++ +T + ES +
Sbjct: 293 KSDATXVTNVYRVGDTDQYLWSGIRVPVTLVDESLGE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,109,362
Number of Sequences: 62578
Number of extensions: 149173
Number of successful extensions: 538
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 152
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)