Query psy9984
Match_columns 144
No_of_seqs 282 out of 2001
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 00:41:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 99.9 1.2E-26 2.7E-31 206.1 1.9 137 3-144 208-393 (1463)
2 cd01381 MYSc_type_VII Myosin m 99.9 1.6E-24 3.4E-29 186.4 2.8 140 3-144 138-326 (671)
3 PTZ00014 myosin-A; Provisional 99.9 2.3E-24 5.1E-29 188.1 1.9 141 3-144 237-427 (821)
4 cd01377 MYSc_type_II Myosin mo 99.9 3.3E-24 7.1E-29 185.1 2.4 138 3-144 153-339 (693)
5 cd01380 MYSc_type_V Myosin mot 99.9 5.3E-24 1.1E-28 183.8 3.6 138 3-144 144-330 (691)
6 cd01383 MYSc_type_VIII Myosin 99.9 7.2E-24 1.6E-28 182.4 2.3 138 3-144 143-329 (677)
7 cd01387 MYSc_type_XV Myosin mo 99.9 1.8E-23 4E-28 180.0 2.2 140 3-144 140-327 (677)
8 cd01384 MYSc_type_XI Myosin mo 99.9 4.1E-23 8.9E-28 177.7 3.8 139 3-144 144-332 (674)
9 cd01385 MYSc_type_IX Myosin mo 99.9 3.2E-23 6.8E-28 178.9 2.8 140 3-144 149-338 (692)
10 cd01378 MYSc_type_I Myosin mot 99.9 6.7E-23 1.5E-27 176.5 3.2 137 3-144 141-330 (674)
11 cd01379 MYSc_type_III Myosin m 99.9 1.6E-22 3.4E-27 173.6 3.3 140 3-144 139-333 (653)
12 smart00242 MYSc Myosin. Large 99.8 2.3E-22 4.9E-27 173.5 3.0 139 3-144 147-334 (677)
13 KOG0164|consensus 99.8 5.2E-22 1.1E-26 167.5 4.4 136 3-144 151-335 (1001)
14 cd00124 MYSc Myosin motor doma 99.8 3.4E-22 7.3E-27 172.6 3.2 140 3-144 139-327 (679)
15 cd01382 MYSc_type_VI Myosin mo 99.8 7.6E-22 1.6E-26 170.9 3.3 85 58-144 273-363 (717)
16 KOG0162|consensus 99.8 4E-21 8.6E-26 162.6 1.1 136 3-144 159-347 (1106)
17 PF00063 Myosin_head: Myosin h 99.8 1.7E-21 3.7E-26 168.5 -2.2 138 3-144 142-328 (689)
18 KOG0163|consensus 99.8 1.9E-20 4.1E-25 159.0 3.7 85 59-144 327-417 (1259)
19 cd01386 MYSc_type_XVIII Myosin 99.8 1.4E-19 3.1E-24 157.5 3.1 126 3-134 140-315 (767)
20 KOG0160|consensus 99.7 6.1E-18 1.3E-22 147.1 7.6 136 4-144 149-332 (862)
21 KOG0161|consensus 99.7 9.6E-18 2.1E-22 154.9 0.5 138 3-144 227-413 (1930)
22 KOG4229|consensus 99.2 9.1E-13 2E-17 117.4 -0.7 85 58-144 306-390 (1062)
23 COG5022 Myosin heavy chain [Cy 98.9 5.6E-09 1.2E-13 94.8 8.9 106 8-130 298-419 (1463)
24 cd01381 MYSc_type_VII Myosin m 98.9 6.9E-09 1.5E-13 90.1 9.0 116 7-129 227-351 (671)
25 PTZ00014 myosin-A; Provisional 98.9 6.4E-09 1.4E-13 91.9 8.7 116 8-128 326-451 (821)
26 cd01385 MYSc_type_IX Myosin mo 98.9 8.6E-09 1.9E-13 89.8 9.2 116 7-129 238-363 (692)
27 cd01384 MYSc_type_XI Myosin mo 98.9 9.5E-09 2.1E-13 89.3 9.0 116 8-129 233-357 (674)
28 cd00124 MYSc Myosin motor doma 98.9 1.1E-08 2.3E-13 89.1 9.1 116 7-129 228-352 (679)
29 smart00242 MYSc Myosin. Large 98.9 1.1E-08 2.5E-13 88.9 9.2 113 8-128 237-358 (677)
30 cd01383 MYSc_type_VIII Myosin 98.9 9.7E-09 2.1E-13 89.3 8.7 112 8-128 233-353 (677)
31 cd01380 MYSc_type_V Myosin mot 98.9 1.2E-08 2.6E-13 89.0 8.9 113 8-129 234-355 (691)
32 cd01379 MYSc_type_III Myosin m 98.9 1.4E-08 3.1E-13 88.0 9.3 113 9-128 235-357 (653)
33 cd01377 MYSc_type_II Myosin mo 98.8 1.1E-08 2.4E-13 89.2 8.4 112 8-128 243-363 (693)
34 cd01387 MYSc_type_XV Myosin mo 98.8 1.9E-08 4E-13 87.6 9.0 115 8-129 229-352 (677)
35 cd01378 MYSc_type_I Myosin mot 98.8 2.1E-08 4.6E-13 87.2 9.0 111 8-128 231-354 (674)
36 cd01386 MYSc_type_XVIII Myosin 98.8 3.1E-08 6.7E-13 87.1 10.0 44 7-50 230-273 (767)
37 cd01382 MYSc_type_VI Myosin mo 98.8 4.8E-08 1E-12 85.5 9.3 116 8-129 259-388 (717)
38 PF00063 Myosin_head: Myosin h 98.7 6.6E-08 1.4E-12 84.3 8.3 112 8-128 232-352 (689)
39 KOG0164|consensus 98.7 1.2E-07 2.5E-12 81.6 9.0 46 8-53 241-286 (1001)
40 KOG0162|consensus 98.6 5.8E-08 1.3E-12 83.7 6.0 46 8-53 249-294 (1106)
41 KOG0161|consensus 98.3 1.1E-06 2.5E-11 82.8 7.1 113 8-130 317-439 (1930)
42 KOG0160|consensus 98.1 1.8E-05 3.8E-10 70.2 9.6 110 8-130 237-358 (862)
43 KOG0163|consensus 98.1 8E-06 1.7E-10 71.1 6.7 108 8-129 312-442 (1259)
44 KOG4229|consensus 97.2 0.00041 8.8E-09 63.1 4.8 77 8-87 292-368 (1062)
45 PF12728 HTH_17: Helix-turn-he 54.9 17 0.00037 20.4 2.7 25 104-129 4-28 (51)
46 PF10075 PCI_Csn8: COP9 signal 54.8 12 0.00027 26.0 2.5 37 103-140 99-135 (143)
47 cd04762 HTH_MerR-trunc Helix-T 47.9 28 0.0006 18.6 2.8 24 104-128 3-26 (49)
48 cd00086 homeodomain Homeodomai 47.1 34 0.00074 19.3 3.3 30 99-129 25-54 (59)
49 TIGR01764 excise DNA binding d 46.3 31 0.00067 18.5 2.9 23 104-127 4-26 (49)
50 cd04761 HTH_MerR-SF Helix-Turn 45.7 29 0.00062 18.9 2.7 23 104-127 3-25 (49)
51 smart00389 HOX Homeodomain. DN 45.5 35 0.00075 19.2 3.1 28 99-127 25-52 (56)
52 PF00046 Homeobox: Homeobox do 44.6 29 0.00064 19.8 2.7 28 99-127 25-52 (57)
53 PF00376 MerR: MerR family reg 43.9 34 0.00074 18.4 2.7 20 104-124 2-21 (38)
54 PF09048 Cro: Cro; InterPro: 42.9 33 0.00073 20.7 2.7 23 104-127 15-37 (59)
55 PF02954 HTH_8: Bacterial regu 42.7 38 0.00083 18.4 2.8 20 103-123 20-39 (42)
56 PF12244 DUF3606: Protein of u 42.5 50 0.0011 19.5 3.4 24 99-123 18-41 (57)
57 PF13443 HTH_26: Cro/C1-type H 41.8 20 0.00043 20.9 1.6 21 99-120 38-58 (63)
58 PHA01976 helix-turn-helix prot 39.6 41 0.00089 19.8 2.9 21 99-120 42-62 (67)
59 smart00497 IENR1 Intron encode 38.0 39 0.00084 18.9 2.4 30 102-132 18-47 (53)
60 PF05678 VQ: VQ motif; InterP 36.2 39 0.00085 17.6 2.0 21 1-21 3-23 (31)
61 COG4056 McrC Methyl coenzyme M 36.0 8.8 0.00019 28.0 -0.7 27 57-83 89-115 (204)
62 COG4103 Uncharacterized protei 34.8 51 0.0011 23.6 3.0 20 101-121 123-142 (148)
63 PF13411 MerR_1: MerR HTH fami 34.7 51 0.0011 19.4 2.7 21 104-125 3-23 (69)
64 PF01381 HTH_3: Helix-turn-hel 34.2 40 0.00088 18.9 2.1 20 99-119 36-55 (55)
65 smart00422 HTH_MERR helix_turn 33.2 54 0.0012 19.3 2.7 24 104-128 3-26 (70)
66 cd04764 HTH_MlrA-like_sg1 Heli 32.6 57 0.0012 19.3 2.7 20 104-124 3-22 (67)
67 cd04763 HTH_MlrA-like Helix-Tu 31.5 60 0.0013 19.3 2.7 20 104-124 3-22 (68)
68 PF03683 UPF0175: Uncharacteri 31.4 53 0.0011 20.5 2.4 25 104-129 37-61 (76)
69 PF03374 ANT: Phage antirepres 29.6 67 0.0015 21.1 2.9 29 102-131 25-53 (111)
70 PF11385 DUF3189: Protein of u 28.8 2.2E+02 0.0047 20.3 5.6 27 61-87 71-99 (148)
71 COG4555 NatA ABC-type Na+ tran 28.6 91 0.002 24.1 3.6 45 8-52 6-65 (245)
72 PF12844 HTH_19: Helix-turn-he 28.5 64 0.0014 18.7 2.4 21 99-120 39-59 (64)
73 PF04458 DUF505: Protein of un 27.2 58 0.0013 28.6 2.7 76 41-125 483-567 (591)
74 cd01104 HTH_MlrA-CarA Helix-Tu 26.6 82 0.0018 18.4 2.6 20 104-124 3-22 (68)
75 PF10668 Phage_terminase: Phag 25.8 93 0.002 18.8 2.7 21 103-124 24-44 (60)
76 PRK06253 O-phosphoseryl-tRNA s 25.6 4E+02 0.0087 23.3 7.3 35 13-47 53-101 (529)
77 KOG4314|consensus 25.5 1E+02 0.0022 23.7 3.4 59 28-87 102-166 (290)
78 PF13560 HTH_31: Helix-turn-he 25.1 60 0.0013 19.0 1.8 21 99-120 42-62 (64)
79 PF01876 RNase_P_p30: RNase P 24.8 2.4E+02 0.0053 19.6 5.3 58 63-125 89-149 (150)
80 PF01476 LysM: LysM domain; I 24.7 1.2E+02 0.0026 15.9 3.1 24 99-123 4-27 (44)
81 PF00356 LacI: Bacterial regul 24.5 1.2E+02 0.0026 17.0 2.9 22 104-126 2-23 (46)
82 COG2886 Uncharacterized small 23.9 1.1E+02 0.0023 20.1 2.9 29 102-131 42-70 (88)
83 COG4197 Uncharacterized protei 23.9 79 0.0017 20.9 2.3 24 105-129 16-39 (96)
84 PF04760 IF2_N: Translation in 23.6 70 0.0015 18.2 1.8 21 104-125 6-26 (54)
85 PF13384 HTH_23: Homeodomain-l 23.4 1.2E+02 0.0026 16.6 2.8 22 102-124 18-39 (50)
86 COG3645 Uncharacterized phage- 22.9 1.2E+02 0.0026 21.5 3.1 28 103-131 49-76 (135)
87 PF10440 WIYLD: Ubiquitin-bind 22.8 2E+02 0.0042 17.7 4.3 34 11-45 9-42 (65)
88 COG2522 Predicted transcriptio 22.1 1E+02 0.0022 21.3 2.7 23 104-127 25-47 (119)
89 TIGR03264 met_CoM_red_C methyl 21.6 22 0.00048 26.4 -0.7 26 58-83 88-113 (194)
90 smart00530 HTH_XRE Helix-turn- 21.5 86 0.0019 16.2 1.9 19 100-119 38-56 (56)
91 PF13413 HTH_25: Helix-turn-he 21.5 87 0.0019 18.7 2.0 17 102-119 46-62 (62)
92 PF00126 HTH_1: Bacterial regu 20.6 1.3E+02 0.0029 17.3 2.7 21 103-124 15-35 (60)
93 PF13518 HTH_28: Helix-turn-he 20.5 1.2E+02 0.0025 16.5 2.4 21 103-124 14-34 (52)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.92 E-value=1.2e-26 Score=206.13 Aligned_cols=137 Identities=27% Similarity=0.368 Sum_probs=113.2
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCCh---------------hcH-HHHHHHHHHH--------hhc----------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFSA---------------LDQ-EVIFRILSSI--------LHL---------- 43 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~~---------------~e~-~~if~~la~i--------L~l---------- 43 (144)
.|+||||+||||+++++++ |+|... .|+ +|||+++.+. +++
T Consensus 208 kTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~ 287 (1463)
T COG5022 208 KTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLS 287 (1463)
T ss_pred cccccCCcccccceEEEEECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHh
Confidence 5999999999999999975 566653 244 7999877554 222
Q ss_pred -C-CeeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 44 -G-NIQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 44 -G-ni~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
| +..+.+.++.+++ .+||+.+++..||++||+|||||||+|.+.. ++.+.+ ++.+.++.+|.|| |
T Consensus 288 ~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r---~g~a~~-~~~~~~~~~c~LL-g 362 (1463)
T COG5022 288 QGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDR---NGAAIF-SDNSVLDKACYLL-G 362 (1463)
T ss_pred hcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecc---cchhhc-CCchHHHHHHHHh-C
Confidence 3 4456666665544 6999999999999999999999999999863 444444 7889999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
||++.|.+||++|+++++||+|.+|++..||
T Consensus 363 Id~~~f~k~lvk~~ikt~~E~i~~~~n~~QA 393 (1463)
T COG5022 363 IDPSLFVKWLVKRQIKTGGEWIVVPLNLEQA 393 (1463)
T ss_pred CCHHHHHHHHHHhHhhcCceEEEecCCHHHH
Confidence 9999999999999999999999999999885
No 2
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.89 E-value=1.6e-24 Score=186.43 Aligned_cols=140 Identities=22% Similarity=0.323 Sum_probs=109.0
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
-|++|||+|||+++.++.+ ++|.+ .+|+ +|||+.+.+. |+|++.
T Consensus 138 kT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~ 217 (671)
T cd01381 138 KTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLA 217 (671)
T ss_pred ccCCCCCccccceeEEEEECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeec
Confidence 4899999999999988854 34443 3344 7999877653 334321
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
...+.++.+.+ .+||+++++..||++|||||||||++|.....++.+.|.+ .+.+.++.+|+|| |
T Consensus 218 ~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i-~~~~~l~~~a~LL-g 295 (671)
T cd01381 218 QGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEV-DDTPNLQRVAQLL-G 295 (671)
T ss_pred CCCCccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceee-CChHHHHHHHHHh-C
Confidence 11111111111 5999999999999999999999999998765334456777 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.++||.+.+|++++|+
T Consensus 296 v~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA 326 (671)
T cd01381 296 VPIQDLMDALTSRTIFTRGETVVTPLSREQA 326 (671)
T ss_pred CCHHHHhhhhceEEEEeCCceEEecCCHHHH
Confidence 9999999999999999999999999998874
No 3
>PTZ00014 myosin-A; Provisional
Probab=99.89 E-value=2.3e-24 Score=188.15 Aligned_cols=141 Identities=25% Similarity=0.268 Sum_probs=107.5
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCC--------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGN-------- 45 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGn-------- 45 (144)
-|+||||||||++++++.+ ++|.. .+|+ +|||+.+.+. |+|.+
T Consensus 237 KT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~ 316 (821)
T PTZ00014 237 KTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYIN 316 (821)
T ss_pred CcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccC
Confidence 4899999999999998864 34443 3444 6999877653 33422
Q ss_pred ---eeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCC-CCCcceecC-ChhHHHHHHHHhc
Q psy9984 46 ---IQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHG-DTDSCSIAP-SSGSLAAFCDILY 112 (144)
Q Consensus 46 ---i~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~-~~~~~~v~~-~~~~l~~~a~LL~ 112 (144)
..+.+.++.+.+ .+||+++++..||+++|||||||||+|.....+ ..+.+.+.. +.+.++.+|+||
T Consensus 317 ~~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LL- 395 (821)
T PTZ00014 317 PKCLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELL- 395 (821)
T ss_pred CCCccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHh-
Confidence 222222332222 699999999999999999999999999875422 235566632 235899999999
Q ss_pred CCCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 113 NIDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 113 gv~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
||++++|.++||+|++.++||.+.+|++++|+
T Consensus 396 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA 427 (821)
T PTZ00014 396 FLDYESLKKELTVKVTYAGNQKIEGPWSKDES 427 (821)
T ss_pred CCCHHHHHHHhhceEEEeCCeeEecCCCHHHH
Confidence 99999999999999999999999999999874
No 4
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.89 E-value=3.3e-24 Score=185.09 Aligned_cols=138 Identities=23% Similarity=0.308 Sum_probs=107.7
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
-|++|||+|||+++.++++ ++|.+ .+|+ +|||+.+.+. |+|.+.
T Consensus 153 kT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL 232 (693)
T cd01377 153 KTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYL 232 (693)
T ss_pred ccCCCCCccccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeee
Confidence 4899999999999988864 34444 3455 7999877654 334322
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
...+.++...+ .+||+++++..||++||||||||||+|.... +.+.+.+ .+.+.+..+|+|| |
T Consensus 233 ~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~--~~~~~~~-~~~~~l~~~a~LL-g 308 (693)
T cd01377 233 SQGELTIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQ--REEQAEL-DGTEEADKAAHLL-G 308 (693)
T ss_pred CCCCccCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecC--CCCcccc-CChHHHHHHHHHh-C
Confidence 11111111111 5999999999999999999999999998764 3555666 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.+++|.+.+|++++|+
T Consensus 309 v~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A 339 (693)
T cd01377 309 VNSADLLKALLHPRIKVGREWVTKGQNVEQV 339 (693)
T ss_pred CCHHHHHHHhcceEEEECCeeEeeCCCHHHH
Confidence 9999999999999999999999999998874
No 5
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.89 E-value=5.3e-24 Score=183.78 Aligned_cols=138 Identities=29% Similarity=0.434 Sum_probs=107.1
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
.|++|||+|||+++.++.+ ++|.. .+|+ +|||+.+.+. |+|.+.
T Consensus 144 kT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~ 223 (691)
T cd01380 144 KTTRNDNSSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLN 223 (691)
T ss_pred CCCCCCCccccceEEEEEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCcccc
Confidence 5899999999999988864 34433 3444 7999877654 444332
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
...+.++...+ .+||+++++..||++||||||||||+|.... .+.+.+..+.+.++.+|+|| |
T Consensus 224 ~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~---~~~~~~~~~~~~l~~~a~LL-g 299 (691)
T cd01380 224 QGGAPTIEGVDDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATR---NDSSSISPKDENLQIACELL-G 299 (691)
T ss_pred CCCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccC---CccceecCChHHHHHHHHHh-C
Confidence 11111221111 5999999999999999999999999998763 44444545677899999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++|++|++.++||.+.+|++++|+
T Consensus 300 v~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA 330 (691)
T cd01380 300 VDASDLRKWLVKRQIVTRSEKIVKPLTKEQA 330 (691)
T ss_pred CCHHHHHHHHHhCEEEECCeeEEecCCHHHH
Confidence 9999999999999999999999999999874
No 6
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.88 E-value=7.2e-24 Score=182.41 Aligned_cols=138 Identities=18% Similarity=0.253 Sum_probs=106.3
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
.|++|||+|||+++.++.+ ++|.+ .+|+ +|||+.+.+. |+|.+.
T Consensus 143 kT~~N~NSSRFGK~~~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~ 222 (677)
T cd01383 143 KTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLK 222 (677)
T ss_pred ccCCCCCcCccceeEEEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceec
Confidence 4899999999999988754 34433 3455 6999777653 344332
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
...+.++.+.+ .+||+++++..||++||||||||||+|.... +++.+.+ .+++.+..+|+|| |
T Consensus 223 ~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~--~~~~~~~-~~~~~l~~~a~LL-g 298 (677)
T cd01383 223 QSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVID--NENHVEP-VADEALSTAAKLI-G 298 (677)
T ss_pred CCCcccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecC--CCccccc-CChHHHHHHHHHh-C
Confidence 11111121111 5999999999999999999999999998753 3334455 4677899999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.++||.+.+|++++|+
T Consensus 299 v~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa 329 (677)
T cd01383 299 CNIEDLMLALSTRKMHVNNDNIVQKLTLQQA 329 (677)
T ss_pred CCHHHHHHHhhhcEEEeCCceEeecCCHHHH
Confidence 9999999999999999999999999999874
No 7
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.87 E-value=1.8e-23 Score=179.99 Aligned_cols=140 Identities=28% Similarity=0.401 Sum_probs=106.6
Q ss_pred cchhcccHHHHHHHHHHHH----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe--------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI-------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~----i~G~~---------------~~e~-~~if~~la~i--------L~lGni-------- 46 (144)
.|++|||+|||+++.++++ ++|.. .+|+ +|||+.+.+. |+|.+.
T Consensus 140 kT~~N~NSSRfGk~~~l~f~~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~ 219 (677)
T cd01387 140 KTVRNDNSSRFGKFVEIFLEGGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQ 219 (677)
T ss_pred CCCCCCCccccceEEEEEecCCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcC
Confidence 4899999999999988764 33433 2344 7999766543 333221
Q ss_pred ----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcCC
Q psy9984 47 ----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNI 114 (144)
Q Consensus 47 ----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~gv 114 (144)
...+.++.+.+ .+||+.+++..||++|||||||||++|.....++.+.+.+ .+++.++.+|+|| ||
T Consensus 220 ~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~-~~~~~l~~~a~LL-gv 297 (677)
T cd01387 220 GGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASV-VSAREIQAVAELL-QI 297 (677)
T ss_pred CCcccCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCccccc-CCHHHHHHHHHHh-CC
Confidence 11111111111 5999999999999999999999999998764323445666 5778999999999 99
Q ss_pred CHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 115 DRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 115 ~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
++++|.++||+|++.++||.+.+|++++|+
T Consensus 298 ~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a 327 (677)
T cd01387 298 SPEGLQKAITFKVTETRREKIFTPLTVESA 327 (677)
T ss_pred CHHHHHHHhccCeEEeCCceEeccCCHHHH
Confidence 999999999999999999999999999874
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.87 E-value=4.1e-23 Score=177.71 Aligned_cols=139 Identities=27% Similarity=0.389 Sum_probs=106.4
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH-------hhcCCe--------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI-------LHLGNI-------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i-------L~lGni-------- 46 (144)
.|++|||+|||+++.++.+ ++|.+ .+|+ +|||+.+.+. |+|.+.
T Consensus 144 kT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~ 223 (674)
T cd01384 144 KTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQ 223 (674)
T ss_pred CCCCCCCcchhheeEEEEECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccC
Confidence 5899999999999988854 34443 3455 7999877643 334332
Q ss_pred ----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecC--ChhHHHHHHHHhc
Q psy9984 47 ----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAP--SSGSLAAFCDILY 112 (144)
Q Consensus 47 ----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~--~~~~l~~~a~LL~ 112 (144)
...+.++...+ .+||+++++..||++|||||||||++|.... +.+++.+.. +.+.+..+|+||
T Consensus 224 ~~~~~~~~~~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~--~~~~~~~~~~~~~~~l~~~a~LL- 300 (674)
T cd01384 224 SNCFELDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGE--EIDSSVLKDEKSEFHLKTAAELL- 300 (674)
T ss_pred CCCccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccC--CCCcccccCcccHHHHHHHHHHh-
Confidence 11111121111 5999999999999999999999999998764 345565533 247899999999
Q ss_pred CCCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 113 NIDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 113 gv~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
||++++|.++|++|++.++||.+.+|++++|+
T Consensus 301 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a 332 (674)
T cd01384 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSA 332 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHH
Confidence 99999999999999999999999999998874
No 9
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.87 E-value=3.2e-23 Score=178.92 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=106.6
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCC--------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGN-------- 45 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGn-------- 45 (144)
-|++|||+|||+++.++.+ ++|.. .+|+ +|||+.+.+. +++..
T Consensus 149 kT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~ 228 (692)
T cd01385 149 KTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLN 228 (692)
T ss_pred ccCCCCCccccceeEEEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeC
Confidence 4899999999999988854 34444 2344 7999777553 22321
Q ss_pred ---eeee-cCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCC-CCCCcceecCChhHHHHHHHHhc
Q psy9984 46 ---IQFS-GGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSH-GDTDSCSIAPSSGSLAAFCDILY 112 (144)
Q Consensus 46 ---i~f~-~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~-~~~~~~~v~~~~~~l~~~a~LL~ 112 (144)
+... +.++...+ .+||++++++.||++||||||||||+|.+... +.++.+.+ .+.+.++.+|+||
T Consensus 229 ~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~~l~~~a~LL- 306 (692)
T cd01385 229 QHNLKIEDGEDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEV-GNPEVVDLLSQLL- 306 (692)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceec-CCHHHHHHHHHHh-
Confidence 1111 11111111 58999999999999999999999999987531 23455666 6788999999999
Q ss_pred CCCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 113 NIDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 113 gv~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
||++++|.++||+|++.++||.+++|++++|+
T Consensus 307 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa 338 (692)
T cd01385 307 KVKRETLMEALTKKRTVTVNETLILPYSLSEA 338 (692)
T ss_pred CCCHHHHHHHhccCeEEeCCCeEEecCCHHHH
Confidence 99999999999999999999999999999874
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.86 E-value=6.7e-23 Score=176.54 Aligned_cols=137 Identities=28% Similarity=0.340 Sum_probs=105.7
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
-|++|||+|||+++.++.+ ++|.+ .+|+ +|||+.+.+. |+|.+.
T Consensus 141 kT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~ 220 (674)
T cd01378 141 KTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLN 220 (674)
T ss_pred ccCCCCCcchhheeEEEEECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeec
Confidence 4899999999999988753 34433 3455 6999877553 333221
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
...+.++...+ .+||+++++..||++||||||||||+|.... ++.+.+ .+.+.++.+|+|| |
T Consensus 221 ~~~~~~~~~~~d~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~---~~~~~~-~~~~~l~~~a~LL-g 295 (674)
T cd01378 221 QSQCYTVDGIDDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENG---DGAAVI-SDKDVLDFAAYLL-G 295 (674)
T ss_pred CCCccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccC---CCcccc-CChHHHHHHHHHc-C
Confidence 11111121111 5999999999999999999999999998763 334566 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCC----cEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQ----ESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~g----e~i~~~ls~~q~ 144 (144)
|++++|.++|++|++.++| |.+.+|++++|+
T Consensus 296 v~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a 330 (674)
T cd01378 296 VDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQA 330 (674)
T ss_pred CCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHH
Confidence 9999999999999999998 999999999874
No 11
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.85 E-value=1.6e-22 Score=173.63 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=105.9
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH---------hhcCCe------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI---------LHLGNI------ 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i---------L~lGni------ 46 (144)
.|++|||+|||+++.++++ ++|.+ .+|+ +|||+.+.+. +.|.+.
T Consensus 139 kT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL 218 (653)
T cd01379 139 RTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYL 218 (653)
T ss_pred CcCCCCCcccceeEEEEEECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCcc
Confidence 4899999999999988854 34443 3454 6999877543 223221
Q ss_pred -----e-eecCCCC----CCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCC-CCCcceecCChhHHHHH
Q psy9984 47 -----Q-FSGGSHG----DTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHG-DTDSCSIAPSSGSLAAF 107 (144)
Q Consensus 47 -----~-f~~~~~~----~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~-~~~~~~v~~~~~~l~~~ 107 (144)
. ..+..+. +.+ .+||+++++..||++||||||||||+|.+.... ..+.+.+ .+.+.++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i-~~~~~l~~~ 297 (653)
T cd01379 219 QNEATRVVQDITSNKFYKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRV-SNVAALENA 297 (653)
T ss_pred CCCCccccCCCccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCccccc-CCHHHHHHH
Confidence 1 1111111 111 599999999999999999999999999875321 2344555 678899999
Q ss_pred HHHhcCCCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 108 CDILYNIDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 108 a~LL~gv~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|+|| ||++++|.++||+|++.++||.+.+|++++|+
T Consensus 298 A~LL-gv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA 333 (653)
T cd01379 298 ASLL-CIRSDELQEALTSHCVVTRGETIVRHNTVEKA 333 (653)
T ss_pred HHHh-CCCHHHHHHHhcccEEEeCCceeeecCCHHHH
Confidence 9999 99999999999999999999999999999874
No 12
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.85 E-value=2.3e-22 Score=173.52 Aligned_cols=139 Identities=32% Similarity=0.421 Sum_probs=105.3
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
.|++|||+|||+++.++.+ ++|.+ .+|+ +|||+.+.+. |+|.+.
T Consensus 147 kT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~ 226 (677)
T smart00242 147 KTVRNNNSSRFGKFIEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLN 226 (677)
T ss_pred ccCCCCCccchheeEEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeC
Confidence 4899999999999988853 44544 2344 7999877554 444332
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
...+.++...+ .+||+.+++..||++||||||||||+|.... +++.+....+.+.++.+|+|| |
T Consensus 227 ~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~--~~~~~~~~~~~~~l~~~a~LL-g 303 (677)
T smart00242 227 QGGCLSVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGR--NDNAASTVKDKEELENAAELL-G 303 (677)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecC--CCCcccccCCHHHHHHHHHHh-C
Confidence 11111111111 5999999999999999999999999998764 222221236788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++|++|++.++||.+.+|++++|+
T Consensus 304 v~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a 334 (677)
T smart00242 304 VDPEELEKALTKRKIKTGGEVITKPLNVEQA 334 (677)
T ss_pred CCHHHHHHHhcccEEEeCCceEEecCCHHHH
Confidence 9999999999999999999999999998764
No 13
>KOG0164|consensus
Probab=99.85 E-value=5.2e-22 Score=167.55 Aligned_cols=136 Identities=26% Similarity=0.348 Sum_probs=104.9
Q ss_pred cchhcccHHHHHHHHHH-HHHcCCCh-------------------hcH-HHHHHHHHHH--------hhc----------
Q psy9984 3 PAVLYNLQVRFCQHNAI-YTYCGFSA-------------------LDQ-EVIFRILSSI--------LHL---------- 43 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a-~~i~G~~~-------------------~e~-~~if~~la~i--------L~l---------- 43 (144)
-|.||||+|||++++.+ |+.-|-+. +|+ .|+|+.|-.. |+|
T Consensus 151 KT~RNdNSSRFGKYMDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~yl 230 (1001)
T KOG0164|consen 151 KTNRNDNSSRFGKYMDINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYL 230 (1001)
T ss_pred ccccCCchhhhhcceeeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhh
Confidence 38999999999999887 34444442 344 6999766432 222
Q ss_pred --CCeeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 44 --GNIQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 44 --Gni~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
|.-...+..+..++ ++||+++|++++|+++|+|||||||.|.+. .|+..+ .+...++.+|+|| +
T Consensus 231 nqg~~~v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~----ed~~~~-~~~~~l~~~aell-~ 304 (1001)
T KOG0164|consen 231 NQGSAKVSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADN----EDSSGI-VNGAQLKYIAELL-S 304 (1001)
T ss_pred hhhhhhhcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeec----Cccccc-chhHHHHHHHHHH-c
Confidence 43333333332222 699999999999999999999999999876 333334 4568899999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
+.+++|.++||+|++.++||.+.++++++|+
T Consensus 305 v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA 335 (1001)
T KOG0164|consen 305 VTGDELERALTSRTVAAGGEIVLKQHNVEQA 335 (1001)
T ss_pred CCHHHHHHHHHHHHHHhccchhhccccHHHH
Confidence 9999999999999999999999999999874
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.85 E-value=3.4e-22 Score=172.58 Aligned_cols=140 Identities=26% Similarity=0.357 Sum_probs=106.1
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCee-e----
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNIQ-F---- 48 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni~-f---- 48 (144)
.|++|||+|||+++.++.+ ++|.+ .+|+ +|||+.+.+. |+|.+.. +
T Consensus 139 kT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~ 218 (679)
T cd00124 139 KTVRNNNSSRFGKFIELQFDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLN 218 (679)
T ss_pred ccCCCCCcccceeEEEEEECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeC
Confidence 5899999999999988753 34433 3455 6999876553 3443321 1
Q ss_pred -------ecCCCCCC--------cccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 49 -------SGGSHGDT--------DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 49 -------~~~~~~~~--------~~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
.+.++... ..+||+++++..||++||||||||||+|......+.+.+.+ .+.+.++.+|+|| |
T Consensus 219 ~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~-~~~~~l~~~a~LL-g 296 (679)
T cd00124 219 QGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEV-KNTEVLSKAAELL-G 296 (679)
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeec-CCHHHHHHHHHHh-C
Confidence 01111111 15999999999999999999999999998764222222445 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.++||.+.+|++++|+
T Consensus 297 v~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a 327 (679)
T cd00124 297 LDPEELEEALTYKVTKVGGEVITIPLTKEEA 327 (679)
T ss_pred CCHHHHHHHhhccEEEeCCceEEecCCHHHH
Confidence 9999999999999999999999999998774
No 15
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.84 E-value=7.6e-22 Score=170.94 Aligned_cols=85 Identities=26% Similarity=0.514 Sum_probs=73.8
Q ss_pred ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceec-CChhHHHHHHHHhcCCCHHHHHHHHhhceee-----eC
Q psy9984 58 SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIA-PSSGSLAAFCDILYNIDRDEFRRCLTHRKIT-----TM 131 (144)
Q Consensus 58 ~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~-~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~-----~~ 131 (144)
.+||+++++..||++||||||||||+|..... ..+.|.+. .+.+.+..+|+|| ||++++|.++||+|++. ++
T Consensus 273 ~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~-~~~~~~~~~~~~~~l~~~a~LL-gv~~~~L~~~l~~r~~~~~~g~~~ 350 (717)
T cd01382 273 KIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGS-TSGGCNVKNQSEQSLEYCAELL-GLDQDDLRVSLTTRVMLTTAGGAK 350 (717)
T ss_pred HcCCCHHHHHHHHHHHHHHHhcCceeEeccCC-CCCcceecCCCHHHHHHHHHHc-CCCHHHHHHHHhheEEecccccCC
Confidence 59999999999999999999999999987531 23456553 3568899999999 99999999999999998 78
Q ss_pred CcEEEecCCccCC
Q psy9984 132 QESFNKPMSVFEM 144 (144)
Q Consensus 132 ge~i~~~ls~~q~ 144 (144)
|+.+.+|++++|+
T Consensus 351 ~~~i~~~l~~~qA 363 (717)
T cd01382 351 GTVIKVPLKVEQA 363 (717)
T ss_pred CceEEecCCHHHH
Confidence 9999999999874
No 16
>KOG0162|consensus
Probab=99.81 E-value=4e-21 Score=162.59 Aligned_cols=136 Identities=22% Similarity=0.242 Sum_probs=108.7
Q ss_pred cchhcccHHHHHHHHHHHHHcCCC--------------------hhcH-HHHHHHHHHH----h-------------h--
Q psy9984 3 PAVLYNLQVRFCQHNAIYTYCGFS--------------------ALDQ-EVIFRILSSI----L-------------H-- 42 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~i~G~~--------------------~~e~-~~if~~la~i----L-------------~-- 42 (144)
.|+||||+|||+++.++-+--|+. ..|+ .|||+.+... + +
T Consensus 159 kTvRNnNSSR~GKY~Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~ 238 (1106)
T KOG0162|consen 159 KTVRNNNSSRFGKYLEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLN 238 (1106)
T ss_pred hhhccCCcccccceEEEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeec
Confidence 589999999999998886543333 2333 6999877443 1 1
Q ss_pred -cCCeeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 43 -LGNIQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 43 -lGni~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
-|+....+.++.+++ .+|+..+++..||+++|+|||||||.|.+. +..+.| .+.+.++..|.|| |
T Consensus 239 ~sg~~s~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee----~~~a~V-~~~~~~~f~ayLl-g 312 (1106)
T KOG0162|consen 239 ASGCYSVDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEE----GNYAAV-SDKSVLEFPAYLL-G 312 (1106)
T ss_pred cccceeccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEee----CCccee-ccchHHHhHHHHh-c
Confidence 177776666554433 799999999999999999999999999985 334556 6788899999999 9
Q ss_pred CCHHHHHHHHhhceeeeC----CcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTM----QESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~----ge~i~~~ls~~q~ 144 (144)
|+...|.++||.|.|.++ .|++..||+++|+
T Consensus 313 i~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA 347 (1106)
T KOG0162|consen 313 IDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQA 347 (1106)
T ss_pred CCHHHHHHHHHHHHHhhcccccceeEEecccHHHH
Confidence 999999999999999884 5999999999985
No 17
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.80 E-value=1.7e-21 Score=168.50 Aligned_cols=138 Identities=28% Similarity=0.411 Sum_probs=100.4
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
.|++|+|++||+++.+..+ ++|.+ .+|+ +|||+.+.+. |+|.+.
T Consensus 142 kT~~N~nSSRfgk~~~l~f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~ 221 (689)
T PF00063_consen 142 KTPRNDNSSRFGKFIELQFDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLN 221 (689)
T ss_dssp EESSETTEESSEEEEEEEEETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCC
T ss_pred ccccCCcccccceEEEEEecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhccccccccccccee
Confidence 4899999999999877643 23333 3455 5999777654 344322
Q ss_pred -----eeecCCCCCC--------cccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDT--------DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~--------~~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
...+.++... ..+||+++++..||++||||||||||+|.+.. +++.+.+ .+.+.++.+|+|| |
T Consensus 222 ~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~--~~~~~~~-~~~~~l~~~a~LL-g 297 (689)
T PF00063_consen 222 QSGCSTIPGIDDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDE--SDESAEV-ENSEELQKAAELL-G 297 (689)
T ss_dssp TTSSSSBTTCTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEET--TSSSEEE-STSHHHHHHHHHT-T
T ss_pred cccccccCCccCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhccccccccc--cccceee-chHHHHHHhhhhc-C
Confidence 1111111111 15999999999999999999999999999875 3445555 6777899999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.+++|.+.+|++++|+
T Consensus 298 v~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a 328 (689)
T PF00063_consen 298 VDSEELEKALTTRTIKVGGETVTKPLSVEQA 328 (689)
T ss_dssp S-HHHHHHHHHSEEEESTTSEEEEE-BHHHH
T ss_pred CCHHHHHHHHhhccccccccccccccchhhh
Confidence 9999999999999999999999999998874
No 18
>KOG0163|consensus
Probab=99.80 E-value=1.9e-20 Score=159.03 Aligned_cols=85 Identities=26% Similarity=0.474 Sum_probs=75.0
Q ss_pred cccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceec-CChhHHHHHHHHhcCCCHHHHHHHHhhceeee-----CC
Q psy9984 59 CSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIA-PSSGSLAAFCDILYNIDRDEFRRCLTHRKITT-----MQ 132 (144)
Q Consensus 59 ~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~-~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~-----~g 132 (144)
+|+++++...||+++|+|||||||+|++...+...+|.|. .++++|..+|+|| |++.++|...||.|.+.+ +|
T Consensus 327 ~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LL-Gld~~elr~~L~aRvMqtt~GG~kG 405 (1259)
T KOG0163|consen 327 LGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELL-GLDQTELRTGLCARVMQTTKGGFKG 405 (1259)
T ss_pred cCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHh-CCCHHHHHHHHHHHHHHhccCCccc
Confidence 8999999999999999999999999998864445678884 4568999999999 999999999999999877 26
Q ss_pred cEEEecCCccCC
Q psy9984 133 ESFNKPMSVFEM 144 (144)
Q Consensus 133 e~i~~~ls~~q~ 144 (144)
..|.+||.+.|+
T Consensus 406 TvIrVPLK~~eA 417 (1259)
T KOG0163|consen 406 TVIRVPLKIHEA 417 (1259)
T ss_pred eEEEeeccHHhh
Confidence 889999998774
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.77 E-value=1.4e-19 Score=157.53 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=92.8
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCee------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNIQ------ 47 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni~------ 47 (144)
.|++|||+|||+++.++.+ ++|.. .+|+ +|||+.+.+. |+|.+..
T Consensus 140 kT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~ 219 (767)
T cd01386 140 STALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFG 219 (767)
T ss_pred CcCCCCCcCcceeEEEEEECCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhh
Confidence 4899999999999988854 44443 3455 7999877653 3443221
Q ss_pred ---eecCCCC----CC--------cccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhc
Q psy9984 48 ---FSGGSHG----DT--------DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILY 112 (144)
Q Consensus 48 ---f~~~~~~----~~--------~~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~ 112 (144)
.....+. +. ..+||+++++..||++||||||||||+|... .+.+.+ .+.+.++.+|+||
T Consensus 220 ~~~~~~~~d~~~D~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~----~~~~~~-~~~~~~~~vA~LL- 293 (767)
T cd01386 220 MGGLSKPEDKQKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV----AGRKQF-ARPEWAQKAAELL- 293 (767)
T ss_pred cCCCCCCcCcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeec----CCcccc-CCHHHHHHHHHHh-
Confidence 0111111 11 1599999999999999999999999999863 223445 5778899999999
Q ss_pred CCCHHHHHHHHhhceeeeCCcE
Q psy9984 113 NIDRDEFRRCLTHRKITTMQES 134 (144)
Q Consensus 113 gv~~~~L~~aLt~r~~~~~ge~ 134 (144)
||++++|.++|+++++..+++.
T Consensus 294 gv~~~~L~~al~~~~~~~~~~~ 315 (767)
T cd01386 294 GCPLEELSSATFKHTLRGGINQ 315 (767)
T ss_pred CCCHHHHHHHhcccEEeeccee
Confidence 9999999999999988777543
No 20
>KOG0160|consensus
Probab=99.73 E-value=6.1e-18 Score=147.08 Aligned_cols=136 Identities=33% Similarity=0.451 Sum_probs=105.9
Q ss_pred chhcccHHHHHHHHHHHH-----HcCCC----------------hhcHHHHHHHHHHH-------hhcCCe---------
Q psy9984 4 AVLYNLQVRFCQHNAIYT-----YCGFS----------------ALDQEVIFRILSSI-------LHLGNI--------- 46 (144)
Q Consensus 4 t~~~~n~~~f~~~~~a~~-----i~G~~----------------~~e~~~if~~la~i-------L~lGni--------- 46 (144)
|++|||++||+++.++.+ |.|.. .+.-+|||+.+++. |+||+.
T Consensus 149 T~rndnsSrFgK~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~ 228 (862)
T KOG0160|consen 149 TTRNDNSSRFGKVIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQS 228 (862)
T ss_pred hhhcccHHHhhhHHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccc
Confidence 899999999999999975 44544 22348999999884 345432
Q ss_pred ---eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcCCC
Q psy9984 47 ---QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNID 115 (144)
Q Consensus 47 ---~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~gv~ 115 (144)
.+.+.++...+ .+|++.++++.+|+++|++|||||++|.... .+.+.. +.++.+..+|+|+ |++
T Consensus 229 ~~~~i~~v~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~---~~~~~~-~~~~~~~~~a~Ll-g~~ 303 (862)
T KOG0160|consen 229 ACVLISGVSDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGV---EETSSS-PVDDHLWTAAELL-GCD 303 (862)
T ss_pred cchhhcccccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeeccc---cccccc-ccchHHHHHHHHh-CCC
Confidence 33333332222 5899999999999999999999999998764 222222 3344899999999 999
Q ss_pred HHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 116 RDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 116 ~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
++.|.++|+.|++.++++.+.+|++..|+
T Consensus 304 ~~~l~~~L~~r~i~~~~e~i~k~l~~~qa 332 (862)
T KOG0160|consen 304 EEALEQWLSKRKILTARESIVKPLTLSQA 332 (862)
T ss_pred HHHHHHHHHHHHhhcccceeecccCHHHH
Confidence 99999999999999999999999998763
No 21
>KOG0161|consensus
Probab=99.66 E-value=9.6e-18 Score=154.86 Aligned_cols=138 Identities=27% Similarity=0.352 Sum_probs=107.3
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCCh---------------hcH-HHHHHHHHHHhh--------c----------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFSA---------------LDQ-EVIFRILSSILH--------L---------- 43 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~~---------------~e~-~~if~~la~iL~--------l---------- 43 (144)
.||+|||++||++++++.+ ++|... .|+ +||||.+-+-++ |
T Consensus 227 ~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~ 306 (1930)
T KOG0161|consen 227 KTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFL 306 (1930)
T ss_pred hhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhh
Confidence 6999999999999999976 344442 233 799977655321 1
Q ss_pred --CCeeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 44 --GNIQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 44 --Gni~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
|...+.+.++...+ .+||+++++.++|+++|+||||||+.|.... +.+.+.+ ++......+|.|| |
T Consensus 307 ~~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~--~~~qa~~-~~~~~a~ka~~ll-g 382 (1930)
T KOG0161|consen 307 SNGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEP--REEQAEF-DNTEVADKACHLL-G 382 (1930)
T ss_pred ccccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccc--cccccCC-CCchHHHHHHHHc-C
Confidence 22222333332222 6999999999999999999999999999875 4556666 6788899999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
++.++|.+++++++++++++.+.+..+.+||
T Consensus 383 ~~~~~~~~al~~priKvg~e~v~k~q~~~q~ 413 (1930)
T KOG0161|consen 383 INVEEFLKALLRPRIKVGREWVSKAQNVEQV 413 (1930)
T ss_pred CCHHHHHHHhcccceeccchhhhhcchHHHH
Confidence 9999999999999999999999988877663
No 22
>KOG4229|consensus
Probab=99.24 E-value=9.1e-13 Score=117.44 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=76.8
Q ss_pred ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcCCCHHHHHHHHhhceeeeCCcEEEe
Q psy9984 58 SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHRKITTMQESFNK 137 (144)
Q Consensus 58 ~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ge~i~~ 137 (144)
.++|.++++..+++++++|||+|||+|.....+..|.+.| .+...+..+|.|| .++++.|.+++|.++..++||.+..
T Consensus 306 v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v-~~~~~v~~vA~lL-~~~~~~l~~alt~~~~~~~ge~~~~ 383 (1062)
T KOG4229|consen 306 VVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEV-ENEEAVERVACLL-LIKEKLLQEALTARVNVTRGELLLA 383 (1062)
T ss_pred HhccchhHHHHHHHhcccceeecceeHHhhhcccccchhc-ccchHHHHHHHHh-hcCHHHhhhhhcccceeeehhhhhh
Confidence 5899999999999999999999999998775434566677 6889999999999 9999999999999999999999999
Q ss_pred cCCccCC
Q psy9984 138 PMSVFEM 144 (144)
Q Consensus 138 ~ls~~q~ 144 (144)
|++.+++
T Consensus 384 ~l~~~~A 390 (1062)
T KOG4229|consen 384 PLLVERA 390 (1062)
T ss_pred hhhHHHh
Confidence 9998764
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.91 E-value=5.6e-09 Score=94.78 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCc------------ccccchhhHHHHHHHHHH
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTD------------SCSFSALDQEVIFRILSS 75 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~------------~~g~~~~~~~~i~~ila~ 75 (144)
|+..+|..+..||.++||..++|..||++||+|||+|||+|....++... .+|+++...... ++--
T Consensus 298 dD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~g~a~~~~~~~~~~~c~LLgId~~~f~k~--lvk~ 375 (1463)
T COG5022 298 DDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNSVLDKACYLLGIDPSLFVKW--LVKR 375 (1463)
T ss_pred ccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecccchhhcCCchHHHHHHHHhCCCHHHHHHH--HHHh
Confidence 57899999999999999999999999999999999999999875543321 244444321110 1111
Q ss_pred HhcccCeeeecCCCCCCCcceecCCh----hHHHHHHHHhcCCCHHHHHHHHhhceeee
Q psy9984 76 ILHLGNIQFSGGSHGDTDSCSIAPSS----GSLAAFCDILYNIDRDEFRRCLTHRKITT 130 (144)
Q Consensus 76 ILhlGni~F~~~~~~~~~~~~v~~~~----~~l~~~a~LL~gv~~~~L~~aLt~r~~~~ 130 (144)
++.-| .+.-.+..+. ...+.+|+.| ++.|..||+.|..++
T Consensus 376 ~ikt~-----------~E~i~~~~n~~QA~~irdslAK~l----Y~~lFdwiV~rIN~s 419 (1463)
T COG5022 376 QIKTG-----------GEWIVVPLNLEQALAIRDSLAKAL----YSNLFDWIVDRINKS 419 (1463)
T ss_pred HhhcC-----------ceEEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 12222 1211111121 3468899999 999999999887544
No 24
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=98.90 E-value=6.9e-09 Score=90.11 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=79.4
Q ss_pred cccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeec
Q psy9984 7 YNLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSG 86 (144)
Q Consensus 7 ~~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~ 86 (144)
.|+.++|.+++.||..+||+.+++..||++||+||||||++|..........+.+.+. ..+..+|.+|-+..-++..
T Consensus 227 ~dD~~~f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~---~~l~~~a~LLgv~~~~L~~ 303 (671)
T cd01381 227 RDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDT---PNLQRVAQLLGVPIQDLMD 303 (671)
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCCh---HHHHHHHHHhCCCHHHHhh
Confidence 3578999999999999999999999999999999999999998754322223334432 2567777777765433321
Q ss_pred CC-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 87 GS-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 87 ~~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
.- ..+++.....-+ ....+.+|+-| ++.|..|++.|...
T Consensus 304 ~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~l----Y~~lF~wiV~~IN~ 351 (671)
T cd01381 304 ALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGI----YGRLFVWIVRKINA 351 (671)
T ss_pred hhceEEEEeCCceEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 10 001111111111 24567889999 99999999987643
No 25
>PTZ00014 myosin-A; Provisional
Probab=98.89 E-value=6.4e-09 Score=91.91 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=77.0
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCC-CCCcccccchhhHHHHHHHHHHHhcccCeeeec
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSH-GDTDSCSFSALDQEVIFRILSSILHLGNIQFSG 86 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~-~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~ 86 (144)
|+..+|.++++||.++||+.+|+..||+++|+||||||++|..... +..+...+.++. ...+..+|.+|-+..-++..
T Consensus 326 dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~-~~~l~~~a~LLgv~~~~L~~ 404 (821)
T PTZ00014 326 DDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDES-LEVFNEACELLFLDYESLKK 404 (821)
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccCCC-HHHHHHHHHHhCCCHHHHHH
Confidence 5789999999999999999999999999999999999999986532 222223333221 22556666666654322221
Q ss_pred CC-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 87 GS-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 87 ~~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
.- ..+.+.....-+ ....+.+|+-| ++.|..||+.|..
T Consensus 405 ~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~l----Y~rLF~wiV~~IN 451 (821)
T PTZ00014 405 ELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAV----YEKLFLWIIRNLN 451 (821)
T ss_pred HhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 10 001111111011 24578899999 9999999998764
No 26
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=98.89 E-value=8.6e-09 Score=89.80 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=79.9
Q ss_pred cccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCC-CCCcccccchhhHHHHHHHHHHHhcccCeeee
Q psy9984 7 YNLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSH-GDTDSCSFSALDQEVIFRILSSILHLGNIQFS 85 (144)
Q Consensus 7 ~~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~-~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~ 85 (144)
.|+...|.++++||..+||+.+++..||++||+||||||++|....+ +..+...+...+ .+..+|.+|.+..-++.
T Consensus 238 ~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~ 314 (692)
T cd01385 238 EDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPE---VVDLLSQLLKVKRETLM 314 (692)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHH---HHHHHHHHhCCCHHHHH
Confidence 36788999999999999999999999999999999999999986543 223333344332 57777877777544432
Q ss_pred cCC-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 86 GGS-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 86 ~~~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
..- ...++.....-+ ....+..|+.| ++.|..|++.+.-.
T Consensus 315 ~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~l----Y~~LF~wiV~~IN~ 363 (692)
T cd01385 315 EALTKKRTVTVNETLILPYSLSEAITARDAMAKCL----YSALFDWIVLRINH 363 (692)
T ss_pred HHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 110 001222221111 24567889999 99999999987643
No 27
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=98.87 E-value=9.5e-09 Score=89.28 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+.+.|.+++.||..+||+.+++..||++||+||||||++|....+. +...+.+..-...+..+|.+|.+..-++...
T Consensus 233 ~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~--~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~ 310 (674)
T cd01384 233 DDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEI--DSSVLKDEKSEFHLKTAAELLMCDEKALEDA 310 (674)
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCC--CcccccCcccHHHHHHHHHHhCCCHHHHHHH
Confidence 57899999999999999999999999999999999999999865421 1122222211346777788887765443321
Q ss_pred CC-----CCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 88 SH-----GDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 88 ~~-----~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
-. ...+.....-+ ....+.+|+.| ++.|..|++.|...
T Consensus 311 L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~l----Y~~LF~wiV~~iN~ 357 (674)
T cd01384 311 LCKRVMVTPEEVITKPLDPDSAELSRDALAKTI----YSRLFDWLVNKINS 357 (674)
T ss_pred hcccEEEeCCceEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 00 01121111111 24677899999 99999999987643
No 28
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=98.87 E-value=1.1e-08 Score=89.12 Aligned_cols=116 Identities=21% Similarity=0.288 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeec
Q psy9984 7 YNLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSG 86 (144)
Q Consensus 7 ~~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~ 86 (144)
.|+.++|.+++.||..+||+.+++..||++||+||||||++|...++.....+.+.+.+ .+..+|.+|.+..-++..
T Consensus 228 ~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~~ 304 (679)
T cd00124 228 IDDAEEFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTE---VLSKAAELLGLDPEELEE 304 (679)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHH---HHHHHHHHhCCCHHHHHH
Confidence 46789999999999999999999999999999999999999987654332223333322 567777777766533321
Q ss_pred CC-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 87 GS-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 87 ~~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
.- ..+++......+ ....+.+|+-| ++.|..|++.|...
T Consensus 305 ~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~l----Y~~lF~wiV~~iN~ 352 (679)
T cd00124 305 ALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKAL----YSRLFDWIVSRINS 352 (679)
T ss_pred HhhccEEEeCCceEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 10 001121111111 24567889999 99999999987643
No 29
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=98.87 E-value=1.1e-08 Score=88.92 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=77.8
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+...|.+++.+|..+||+.+|+..||++||+||||||++|...++...... +...+ .++.+|.+|.+..-++...
T Consensus 237 ~d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~-~~~~~---~l~~~a~LLgv~~~~L~~~ 312 (677)
T smart00242 237 DDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAAST-VKDKE---ELENAAELLGVDPEELEKA 312 (677)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccc-cCCHH---HHHHHHHHhCCCHHHHHHH
Confidence 5788999999999999999999999999999999999999987554322211 33322 5677777777754333211
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ..+.+.....-+ ....+.+|+-| ++.|..|++.|.-
T Consensus 313 l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~l----Y~~lF~wiV~~iN 358 (677)
T smart00242 313 LTKRKIKTGGEVITKPLNVEQALDARDALAKAL----YSRLFDWLVKRIN 358 (677)
T ss_pred hcccEEEeCCceEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 001121111111 24578899999 9999999998763
No 30
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=98.86 E-value=9.7e-09 Score=89.28 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+...|.+++.||..+||+.+++..||++||+||||||++|...++.+. +.+..+ +.+..+|.+|-+..-++...
T Consensus 233 dd~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~--~~~~~~---~~l~~~a~LLgv~~~~L~~~ 307 (677)
T cd01383 233 DDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENH--VEPVAD---EALSTAAKLIGCNIEDLMLA 307 (677)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcc--cccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 5688999999999999999999999999999999999999986443221 111111 24556666666543222211
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ..+.+.....-+ ....+.+|+-| ++.|..|++.|..
T Consensus 308 l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~l----Y~~lF~wiV~~IN 353 (677)
T cd01383 308 LSTRKMHVNNDNIVQKLTLQQAIDARDALAKSI----YASLFDWLVEQIN 353 (677)
T ss_pred hhhcEEEeCCceEeecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 001111111111 24567889999 9999999998764
No 31
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=98.85 E-value=1.2e-08 Score=88.96 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+..+|.+++.||..+||+.+|+..||++||+||||||++|...++... . +... ...+..+|.+|-+..-++...
T Consensus 234 ~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~-~--~~~~--~~~l~~~a~LLgv~~~~L~~~ 308 (691)
T cd01380 234 DDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSS-S--ISPK--DENLQIACELLGVDASDLRKW 308 (691)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccc-e--ecCC--hHHHHHHHHHhCCCHHHHHHH
Confidence 6789999999999999999999999999999999999999987543221 1 1110 123556666665544333211
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
- ..+.+......+ ....+.+|+.| ++.|..|++.|...
T Consensus 309 l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~l----Y~~LF~wiV~~iN~ 355 (691)
T cd01380 309 LVKRQIVTRSEKIVKPLTKEQAIVARDALAKHI----YSKLFDWIVDVINK 355 (691)
T ss_pred HHhCEEEECCeeEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 0 001111111111 24567889999 99999999987643
No 32
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=98.85 E-value=1.4e-08 Score=87.96 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCC-CCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 9 LQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSH-GDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 9 n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~-~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
+...|.++++||..+||+.+++..||++||+||||||++|...+. .......+... ..+..+|.+|.+..-++...
T Consensus 235 ~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~---~~l~~~A~LLgv~~~~L~~~ 311 (653)
T cd01379 235 YKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNV---AALENAASLLCIRSDELQEA 311 (653)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCH---HHHHHHHHHhCCCHHHHHHH
Confidence 467899999999999999999999999999999999999986542 22222233332 24666677776654333211
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ...++......+ ....+.+|+-| ++.|..|++.|.-
T Consensus 312 L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~l----Y~~LF~wiV~~IN 357 (653)
T cd01379 312 LTSHCVVTRGETIVRHNTVEKATDARDAMAKAL----YGRLFSWIVNRIN 357 (653)
T ss_pred hcccEEEeCCceeeecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 001121111111 25678889999 9999999998763
No 33
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=98.85 E-value=1.1e-08 Score=89.17 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+...|.+++.+|..+||+.+++..||++||+||||||++|....+.+. ..+.+. ..+..+|.+|.+..-++...
T Consensus 243 ~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~--~~~~~~---~~l~~~a~LLgv~~~~L~~~ 317 (693)
T cd01377 243 DDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQ--AELDGT---EEADKAAHLLGVNSADLLKA 317 (693)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCc--cccCCh---HHHHHHHHHhCCCHHHHHHH
Confidence 6789999999999999999999999999999999999999987532211 112221 24555555555433222211
Q ss_pred C-----CCCCCcceecC----ChhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAP----SSGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~----~~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ..+.+...... .....+.+|+.| ++.|..|++.|..
T Consensus 318 l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~l----Y~~LF~wiV~~IN 363 (693)
T cd01377 318 LLHPRIKVGREWVTKGQNVEQVSFSVGALAKAL----YERLFLWLVKRIN 363 (693)
T ss_pred hcceEEEECCeeEeeCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 00111111111 124577899999 9999999998763
No 34
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=98.82 E-value=1.9e-08 Score=87.56 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
++...|.+++.||..+||+.+++..||++||+||||||++|............+...+ .+..+|.+|.+..-++...
T Consensus 229 ~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~---~l~~~a~LLgv~~~~L~~~ 305 (677)
T cd01387 229 SDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAR---EIQAVAELLQISPEGLQKA 305 (677)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHH---HHHHHHHHhCCCHHHHHHH
Confidence 5678999999999999999999999999999999999999986543222222233222 4566677776654333211
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
- ....+.....-+ ....+.+|+-| ++.|..|++.+...
T Consensus 306 lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~l----Y~~lF~wiV~~iN~ 352 (677)
T cd01387 306 ITFKVTETRREKIFTPLTVESAVDARDAIAKVL----YALLFNWLITRVNA 352 (677)
T ss_pred hccCeEEeCCceEeccCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 0 001111111111 23567889999 99999999987643
No 35
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=98.81 E-value=2.1e-08 Score=87.17 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+...|.++++||..+||+.+++..||++||+||||||++|...++.. +-+.+. +.+..+|.+|.+..-++...
T Consensus 231 ~d~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~~---~~~~~~---~~l~~~a~LLgv~~~~L~~~ 304 (674)
T cd01378 231 DDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDGA---AVISDK---DVLDFAAYLLGVDPSELEKA 304 (674)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCCc---cccCCh---HHHHHHHHHcCCCHHHHHHH
Confidence 567899999999999999999999999999999999999998754432 122222 24556666666544333211
Q ss_pred ------CCCC---CCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 ------SHGD---TDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ------~~~~---~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
...+ .+.....-+ ....+.+|+.| ++.|..|++.|..
T Consensus 305 l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~l----Y~~lF~wiV~~IN 354 (674)
T cd01378 305 LTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAI----YSRLFDWLVSRIN 354 (674)
T ss_pred hcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0001 021111111 24578899999 9999999998763
No 36
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=98.81 E-value=3.1e-08 Score=87.15 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeec
Q psy9984 7 YNLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSG 50 (144)
Q Consensus 7 ~~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~ 50 (144)
.++..+|.++++||..+||+.+|+..||++||+||||||+.|..
T Consensus 230 ~~D~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~ 273 (767)
T cd01386 230 QKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATK 273 (767)
T ss_pred ccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeee
Confidence 35678999999999999999999999999999999999999976
No 37
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=98.75 E-value=4.8e-08 Score=85.50 Aligned_cols=116 Identities=15% Similarity=0.234 Sum_probs=74.2
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeec-
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSG- 86 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~- 86 (144)
|+...|.+++.||..+||+.+++..||++||+||||||++|...++. ...+.+... -...+..+|.+|.+..-++..
T Consensus 259 dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~-~~~~~~~~~-~~~~l~~~a~LLgv~~~~L~~~ 336 (717)
T cd01382 259 DDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNVKNQ-SEQSLEYCAELLGLDQDDLRVS 336 (717)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCC-CCcceecCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 56789999999999999999999999999999999999999864321 111111111 112455566666554332211
Q ss_pred ---------CCCCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 87 ---------GSHGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 87 ---------~~~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
.+...++...+.-+ ....+.+|+-| ++.|..|++.+...
T Consensus 337 l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~l----Y~~LF~wiV~~IN~ 388 (717)
T cd01382 337 LTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAV----YSHLFDHVVSRVNQ 388 (717)
T ss_pred HhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 00001111111111 24567889999 99999999987643
No 38
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=98.69 E-value=6.6e-08 Score=84.27 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
++..+|.+++.+|..+||+.+++..||++||+|||||||+|....+... .-+.+.+ .+..+|.+|.+..-++...
T Consensus 232 ~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~--~~~~~~~---~l~~~a~LLgv~~~~L~~~ 306 (689)
T PF00063_consen 232 DDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDES--AEVENSE---ELQKAAELLGVDSEELEKA 306 (689)
T ss_dssp THHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSS--EEESTSH---HHHHHHHHTTS-HHHHHHH
T ss_pred cCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccc--eeechHH---HHHHhhhhcCCCHHHHHHH
Confidence 5788999999999999999999999999999999999999988663211 1122222 2455555555533222110
Q ss_pred -----CCCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 -----SHGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 -----~~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
.....+...+..+ ....+.+|+.| +..|..|++.+..
T Consensus 307 l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~L----Y~~LF~wIV~~iN 352 (689)
T PF00063_consen 307 LTTRTIKVGGETVTKPLSVEQASDARDALAKAL----YSRLFDWIVERIN 352 (689)
T ss_dssp HHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred Hhhccccccccccccccchhhhhhhhhhhhhhh----hhHHHHHHHHhhh
Confidence 0001222222112 24578899999 9999999998764
No 39
>KOG0164|consensus
Probab=98.67 E-value=1.2e-07 Score=81.65 Aligned_cols=46 Identities=28% Similarity=0.504 Sum_probs=43.0
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSH 53 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~ 53 (144)
|++++|+.+.+||.++||+++|..++|+++|++|||||+.|....+
T Consensus 241 nD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed 286 (1001)
T KOG0164|consen 241 NDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED 286 (1001)
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc
Confidence 4789999999999999999999999999999999999999987654
No 40
>KOG0162|consensus
Probab=98.63 E-value=5.8e-08 Score=83.66 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSH 53 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~ 53 (144)
|++++|+.++.||.++|+..+||..||+++|+|||||||.|...++
T Consensus 249 dd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~~ 294 (1106)
T KOG0162|consen 249 DDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEGN 294 (1106)
T ss_pred chHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeCC
Confidence 5689999999999999999999999999999999999999998554
No 41
>KOG0161|consensus
Probab=98.34 E-value=1.1e-06 Score=82.80 Aligned_cols=113 Identities=20% Similarity=0.269 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCC-CCCcccccchhhHHHHHHHHHHHhcccCeeeec
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSH-GDTDSCSFSALDQEVIFRILSSILHLGNIQFSG 86 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~-~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~ 86 (144)
|+..+|..+..||+++||+.+|+..||+++++|||+||+.|..... ++....+.. .-.-++..|+++--.|..
T Consensus 317 dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~------~a~ka~~llg~~~~~~~~ 390 (1930)
T KOG0161|consen 317 DDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDNTE------VADKACHLLGINVEEFLK 390 (1930)
T ss_pred chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCCch------HHHHHHHHcCCCHHHHHH
Confidence 5789999999999999999999999999999999999999987632 222111111 111223333333333321
Q ss_pred CC-----CCCCC----cceecCChhHHHHHHHHhcCCCHHHHHHHHhhceeee
Q psy9984 87 GS-----HGDTD----SCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHRKITT 130 (144)
Q Consensus 87 ~~-----~~~~~----~~~v~~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~ 130 (144)
.- .-+.+ +-.+......+...|+-+ ++.|..||++|...+
T Consensus 391 al~~priKvg~e~v~k~q~~~q~~~~v~alAk~l----YerlF~wlV~riN~s 439 (1930)
T KOG0161|consen 391 ALLRPRIKVGREWVSKAQNVEQVLFAVEALAKAL----YERLFGWLVKRINKS 439 (1930)
T ss_pred HhcccceeccchhhhhcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 10 00000 000000124567777888 999999999887543
No 42
>KOG0160|consensus
Probab=98.13 E-value=1.8e-05 Score=70.18 Aligned_cols=110 Identities=22% Similarity=0.257 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCc------------ccccchhhHHHHHHHHHH
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTD------------SCSFSALDQEVIFRILSS 75 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~------------~~g~~~~~~~~i~~ila~ 75 (144)
+++.+|..++++|.++|++.++|..||++++++||+||++|......+.. .+|...+..... +.-.
T Consensus 237 ~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~~~~~~a~Llg~~~~~l~~~--L~~r 314 (862)
T KOG0160|consen 237 SDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDDHLWTAAELLGCDEEALEQW--LSKR 314 (862)
T ss_pred ccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccchHHHHHHHHhCCCHHHHHHH--HHHH
Confidence 56899999999999999999999999999999999999999865543211 122222221111 1222
Q ss_pred HhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcCCCHHHHHHHHhhceeee
Q psy9984 76 ILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHRKITT 130 (144)
Q Consensus 76 ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~ 130 (144)
.++.++-.+...- ....-....+..|+.+ ...|..|++.+....
T Consensus 315 ~i~~~~e~i~k~l-------~~~qa~~~rD~lak~i----ys~LFdwlV~~in~s 358 (862)
T KOG0160|consen 315 KILTARESIVKPL-------TLSQAVKRRDALAKQL----YSLLFDWLVAKINGS 358 (862)
T ss_pred Hhhcccceeeccc-------CHHHHHHhhhhhHHHH----HHHHHHHHHHHhhcc
Confidence 3333322222110 0000123567788888 888999999876543
No 43
>KOG0163|consensus
Probab=98.10 E-value=8e-06 Score=71.11 Aligned_cols=108 Identities=17% Similarity=0.264 Sum_probs=70.9
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCc-----------------ccccchhhHHHHH
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTD-----------------SCSFSALDQEVIF 70 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~-----------------~~g~~~~~~~~i~ 70 (144)
|+-.+|.++..|+..+|++++|...||+++|+|||||||+|+...+...- .+|+...+.. .
T Consensus 312 dD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr--~ 389 (1259)
T KOG0163|consen 312 DDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELR--T 389 (1259)
T ss_pred ccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHH--H
Confidence 56799999999999999999999999999999999999999875431111 2555554433 2
Q ss_pred HHHHHHhcccCeeeecCCCCCCCccee-cC-----ChhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 71 RILSSILHLGNIQFSGGSHGDTDSCSI-AP-----SSGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 71 ~ila~ILhlGni~F~~~~~~~~~~~~v-~~-----~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
.+++.|+.--- ++..+..+ ++ -...-+..|+-. +..|..||+.|...
T Consensus 390 ~L~aRvMqtt~--------GG~kGTvIrVPLK~~eA~n~RDALaKai----YSkLFD~lV~~iNq 442 (1259)
T KOG0163|consen 390 GLCARVMQTTK--------GGFKGTVIRVPLKIHEASNARDALAKAI----YSKLFDWLVGRINQ 442 (1259)
T ss_pred HHHHHHHHhcc--------CCccceEEEeeccHHhhcchHHHHHHHH----HHHHHHHHHHHhhc
Confidence 34555554211 01111111 11 112345666667 78888999887643
No 44
>KOG4229|consensus
Probab=97.24 E-value=0.00041 Score=63.09 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=62.9
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
++..+|.++..+|.++||...++..||++++++||+||+.|......+.+...+.... .+..+|.+|.++--.|.+.
T Consensus 292 ~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~---~v~~vA~lL~~~~~~l~~a 368 (1062)
T KOG4229|consen 292 DDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEE---AVERVACLLLIKEKLLQEA 368 (1062)
T ss_pred HHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccch---HHHHHHHHhhcCHHHhhhh
Confidence 4578999999999999999999999999999999999999876554455555555544 7889999999887666543
No 45
>PF12728 HTH_17: Helix-turn-helix domain
Probab=54.93 E-value=17 Score=20.39 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
.+.+|++| ||+...+.+++-...+.
T Consensus 4 ~~e~a~~l-~is~~tv~~~~~~g~i~ 28 (51)
T PF12728_consen 4 VKEAAELL-GISRSTVYRWIRQGKIP 28 (51)
T ss_pred HHHHHHHH-CcCHHHHHHHHHcCCCC
Confidence 56899999 99999999998776653
No 46
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=54.78 E-value=12 Score=25.98 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhceeeeCCcEEEecCC
Q psy9984 103 SLAAFCDILYNIDRDEFRRCLTHRKITTMQESFNKPMS 140 (144)
Q Consensus 103 ~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ge~i~~~ls 140 (144)
.+..+|++| |++.+++.+.+..+-=...+..+..+.+
T Consensus 99 s~~~la~~L-g~~~~el~~~~~~~gW~~d~~~~~~~~~ 135 (143)
T PF10075_consen 99 SLSDLAEML-GLSEEELEKFIKSRGWTVDGDGVLFPPN 135 (143)
T ss_dssp -HHHHHHHT-TS-HHHHHHHHHHHT-EE-----EE---
T ss_pred CHHHHHHHh-CCCHHHHHHHHHHcCCEECCCccEEecC
Confidence 378999999 9999999999998865555555544433
No 47
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=47.90 E-value=28 Score=18.57 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
+..+|++| ||++..+.++.-...+
T Consensus 3 ~~e~a~~l-gvs~~tl~~~~~~g~~ 26 (49)
T cd04762 3 TKEAAELL-GVSPSTLRRWVKEGKL 26 (49)
T ss_pred HHHHHHHH-CcCHHHHHHHHHcCCC
Confidence 46789999 9999999998765443
No 48
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=47.14 E-value=34 Score=19.34 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
++...+..+|..+ |++......|+..|...
T Consensus 25 P~~~~~~~la~~~-~l~~~qV~~WF~nrR~~ 54 (59)
T cd00086 25 PSREEREELAKEL-GLTERQVKIWFQNRRAK 54 (59)
T ss_pred CCHHHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 5678899999999 99999999999877643
No 49
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=46.28 E-value=31 Score=18.52 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
+..+|++| ||+...+.+++-...
T Consensus 4 ~~e~a~~l-gis~~ti~~~~~~g~ 26 (49)
T TIGR01764 4 VEEAAEYL-GVSKDTVYRLIHEGE 26 (49)
T ss_pred HHHHHHHH-CCCHHHHHHHHHcCC
Confidence 56899999 999999998875544
No 50
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=45.67 E-value=29 Score=18.93 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
+..+|+++ ||++..|..+.-.-.
T Consensus 3 ~~e~a~~~-gv~~~tlr~~~~~g~ 25 (49)
T cd04761 3 IGELAKLT-GVSPSTLRYYERIGL 25 (49)
T ss_pred HHHHHHHH-CcCHHHHHHHHHCCC
Confidence 56789999 999999998854443
No 51
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=45.50 E-value=35 Score=19.19 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
++......+|..+ |++...+..|+..|.
T Consensus 25 P~~~~~~~la~~~-~l~~~qV~~WF~nrR 52 (56)
T smart00389 25 PSREEREELAAKL-GLSERQVKVWFQNRR 52 (56)
T ss_pred CCHHHHHHHHHHH-CcCHHHHHHhHHHHh
Confidence 5778899999999 999999999998765
No 52
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=44.56 E-value=29 Score=19.76 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
++......+|.-| |++......|...|.
T Consensus 25 p~~~~~~~la~~l-~l~~~~V~~WF~nrR 52 (57)
T PF00046_consen 25 PSKEEREELAKEL-GLTERQVKNWFQNRR 52 (57)
T ss_dssp CHHHHHHHHHHHH-TSSHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccCHHHhH
Confidence 4567789999999 999999999998764
No 53
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=43.92 E-value=34 Score=18.41 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
...+|+++ ||++..|..+--
T Consensus 2 i~e~A~~~-gvs~~tlR~ye~ 21 (38)
T PF00376_consen 2 IGEVAKLL-GVSPRTLRYYER 21 (38)
T ss_dssp HHHHHHHH-TS-HHHHHHHHH
T ss_pred HHHHHHHH-CCCHHHHHHHHH
Confidence 35789999 999999987643
No 54
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=42.86 E-value=33 Score=20.69 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
-..+|++| ||....+.+||-..+
T Consensus 15 Q~kaA~~l-GV~Q~AIsKAlr~gR 37 (59)
T PF09048_consen 15 QAKAARAL-GVTQSAISKALRAGR 37 (59)
T ss_dssp HHHHHHHH-TS-HHHHHHHHHCT-
T ss_pred hHHHHHHc-CCcHHHHHHHHHcCC
Confidence 35789999 999999999997543
No 55
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=42.73 E-value=38 Score=18.41 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHH
Q psy9984 103 SLAAFCDILYNIDRDEFRRCL 123 (144)
Q Consensus 103 ~l~~~a~LL~gv~~~~L~~aL 123 (144)
....+|+.| |++...|.+-|
T Consensus 20 n~~~aA~~L-gisr~tL~~kl 39 (42)
T PF02954_consen 20 NVSKAARLL-GISRRTLYRKL 39 (42)
T ss_dssp -HHHHHHHH-TS-HHHHHHHH
T ss_pred CHHHHHHHH-CCCHHHHHHHH
Confidence 467899999 99999886644
No 56
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=42.50 E-value=50 Score=19.54 Aligned_cols=24 Identities=4% Similarity=0.253 Sum_probs=21.0
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCL 123 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aL 123 (144)
.++..+..-|+-| ||++++|..|.
T Consensus 18 ~e~~ev~ywa~~~-gvt~~~L~~AV 41 (57)
T PF12244_consen 18 SEPYEVRYWAKRF-GVTEEQLREAV 41 (57)
T ss_pred CCHHHHHHHHHHH-CcCHHHHHHHH
Confidence 4557899999999 99999999886
No 57
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=41.83 E-value=20 Score=20.94 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
.+.+.+..+|+.| +|++++|.
T Consensus 38 ~~~~~l~~ia~~l-~~~~~el~ 58 (63)
T PF13443_consen 38 PSLDTLEKIAKAL-NCSPEELF 58 (63)
T ss_dssp --HHHHHHHHHHH-T--HHHCT
T ss_pred ccHHHHHHHHHHc-CCCHHHHh
Confidence 3567899999999 99999874
No 58
>PHA01976 helix-turn-helix protein
Probab=39.64 E-value=41 Score=19.76 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.1
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
++.+.+..+|+.| ||+.+.|.
T Consensus 42 p~~~~l~~ia~~l-~v~~~~l~ 62 (67)
T PHA01976 42 PNLKTLLRLADAL-GVTLDWLC 62 (67)
T ss_pred CCHHHHHHHHHHH-CcCHHHHh
Confidence 5677899999999 99999774
No 59
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=37.98 E-value=39 Score=18.87 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=24.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q psy9984 102 GSLAAFCDILYNIDRDEFRRCLTHRKITTMQ 132 (144)
Q Consensus 102 ~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~g 132 (144)
.++..+|+.| |++...+.+++-.+....+|
T Consensus 18 ~S~~eAa~~l-g~~~~~I~~~~~~~~~~~gg 47 (53)
T smart00497 18 SSIREAAKYL-GISHSSISKYLNTGKKFKGG 47 (53)
T ss_pred cCHHHHHHHh-CCCHHHHHHHHhCCCccCCe
Confidence 4678999999 99999999999876655543
No 60
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=36.16 E-value=39 Score=17.59 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=17.6
Q ss_pred CCcchhcccHHHHHHHHHHHH
Q psy9984 1 PEPAVLYNLQVRFCQHNAIYT 21 (144)
Q Consensus 1 ~~~t~~~~n~~~f~~~~~a~~ 21 (144)
+.+++++-+.+.|..+++-++
T Consensus 3 ~~p~vi~~d~~~Fr~lVQ~LT 23 (31)
T PF05678_consen 3 SPPTVIHTDPSNFRALVQRLT 23 (31)
T ss_pred CCCEEEEeCHHHHHHHHHHhH
Confidence 368899999999999887765
No 61
>COG4056 McrC Methyl coenzyme M reductase, subunit C [Coenzyme metabolism]
Probab=36.00 E-value=8.8 Score=28.02 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.2
Q ss_pred cccccchhhHHHHHHHHHHHhcccCee
Q psy9984 57 DSCSFSALDQEVIFRILSSILHLGNIQ 83 (144)
Q Consensus 57 ~~~g~~~~~~~~i~~ila~ILhlGni~ 83 (144)
..+|+++++...+-+---++.||||+.
T Consensus 89 ~tfgl~P~Eveqi~rHkl~ViHlGnvk 115 (204)
T COG4056 89 STFGLSPEEVEQINRHKLAVIHLGNVK 115 (204)
T ss_pred CccccCHHHHHHhhhceEEEEEecchH
Confidence 368999999999888778899999986
No 62
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.75 E-value=51 Score=23.62 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=16.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHH
Q psy9984 101 SGSLAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 101 ~~~l~~~a~LL~gv~~~~L~~ 121 (144)
+..+..+|+|| ||++.++.+
T Consensus 123 d~vi~RvAeLL-gV~~~d~V~ 142 (148)
T COG4103 123 DHVIWRVAELL-GVSPEDRVR 142 (148)
T ss_pred HHHHHHHHHHh-CCCHHHHHH
Confidence 45688999999 999998844
No 63
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=34.74 E-value=51 Score=19.41 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHhh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTH 125 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~ 125 (144)
+..+|+++ ||++..|..|.-.
T Consensus 3 i~eva~~~-gvs~~tlr~y~~~ 23 (69)
T PF13411_consen 3 IKEVAKLL-GVSPSTLRYYERE 23 (69)
T ss_dssp HHHHHHHT-TTTHHHHHHHHHT
T ss_pred HHHHHHHH-CcCHHHHHHHHHh
Confidence 46799999 9999999888543
No 64
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=34.21 E-value=40 Score=18.86 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.9
Q ss_pred CChhHHHHHHHHhcCCCHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEF 119 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L 119 (144)
++.+.+..+|+.| |++.+.|
T Consensus 36 ~~~~~~~~ia~~l-~~~~~~l 55 (55)
T PF01381_consen 36 PSLDTLKKIAKAL-GVSPEYL 55 (55)
T ss_dssp SBHHHHHHHHHHH-TSEHHHH
T ss_pred CCHHHHHHHHHHH-CCCHHHC
Confidence 4667899999999 9998865
No 65
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=33.25 E-value=54 Score=19.29 Aligned_cols=24 Identities=4% Similarity=0.093 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
+..+|+++ ||++..|..+.-.-.+
T Consensus 3 ~~eva~~~-gvs~~tlr~~~~~gli 26 (70)
T smart00422 3 IGEVAKLA-GVSVRTLRYYERIGLL 26 (70)
T ss_pred HHHHHHHH-CcCHHHHHHHHHCCCC
Confidence 56789999 9999999988654443
No 66
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=32.59 E-value=57 Score=19.26 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
+..+|+++ ||++..|..|--
T Consensus 3 i~evA~~~-gvs~~tlR~~~~ 22 (67)
T cd04764 3 IKEVSEII-GVKPHTLRYYEK 22 (67)
T ss_pred HHHHHHHH-CcCHHHHHHHHH
Confidence 46789999 999999988843
No 67
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=31.55 E-value=60 Score=19.27 Aligned_cols=20 Identities=10% Similarity=0.102 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
+..+|+++ ||++..|..+--
T Consensus 3 i~e~A~~~-gVs~~tlr~ye~ 22 (68)
T cd04763 3 IGEVALLT-GIKPHVLRAWER 22 (68)
T ss_pred HHHHHHHH-CcCHHHHHHHHH
Confidence 46789999 999999987743
No 68
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=31.42 E-value=53 Score=20.46 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
+..+|+++ |++.-++.+.|-.|-+.
T Consensus 37 ~gkAAela-g~s~~eF~~~L~~~gI~ 61 (76)
T PF03683_consen 37 LGKAAELA-GMSRWEFLELLKERGIP 61 (76)
T ss_pred HHHHHHHh-CCCHHHHHHHHHHCCCC
Confidence 77999999 99999999999887765
No 69
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=29.60 E-value=67 Score=21.07 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=24.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q psy9984 102 GSLAAFCDILYNIDRDEFRRCLTHRKITTM 131 (144)
Q Consensus 102 ~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ 131 (144)
-.+..+|++| |+.+..|.++|..+.+.-+
T Consensus 25 ~ti~~~AK~L-~i~~~~l~~~Lr~~g~l~~ 53 (111)
T PF03374_consen 25 YTIREAAKLL-GIGRNKLFQWLREKGWLYR 53 (111)
T ss_pred ccHHHHHHHh-CCCHHHHHHHHHhCCceEE
Confidence 3578999999 9999999999997766555
No 70
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=28.84 E-value=2.2e+02 Score=20.30 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=16.6
Q ss_pred cchhhHHHHHHHHHHHhcc--cCeeeecC
Q psy9984 61 FSALDQEVIFRILSSILHL--GNIQFSGG 87 (144)
Q Consensus 61 ~~~~~~~~i~~ila~ILhl--Gni~F~~~ 87 (144)
-..+.....+.-++.|+++ .++.|.+.
T Consensus 71 ~~~~~~~~al~~l~~i~~~~~~~i~~vdt 99 (148)
T PF11385_consen 71 NNGKIVERALKSLLEILGIENEEIILVDT 99 (148)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 3345555566667777777 46666654
No 71
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=28.59 E-value=91 Score=24.09 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHHHHcCCChhc-------------HHHHHHHHHHHhhc--CCeeeecCC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALD-------------QEVIFRILSSILHL--GNIQFSGGS 52 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e-------------~~~if~~la~iL~l--Gni~f~~~~ 52 (144)
+..++|+...++.+-+-|..++ ...+.+++++.|+. |.+.+.+.+
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d 65 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65 (245)
T ss_pred ehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecc
Confidence 4567787777777755554332 46777888888775 666665543
No 72
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=28.50 E-value=64 Score=18.69 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
++...+..+|+.| ||+++.|.
T Consensus 39 ~~~~~l~~i~~~~-~v~~~~l~ 59 (64)
T PF12844_consen 39 PSVSTLKKIAEAL-GVSLDELF 59 (64)
T ss_dssp -BHHHHHHHHHHH-TS-HHHHC
T ss_pred CCHHHHHHHHHHh-CCCHHHHh
Confidence 4567899999999 99999874
No 73
>PF04458 DUF505: Protein of unknown function (DUF505); InterPro: IPR007548 This is a family of uncharacterised prokaryotic proteins.
Probab=27.20 E-value=58 Score=28.56 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=49.5
Q ss_pred hhcCCeeeecCCC---------CCCcccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHh
Q psy9984 41 LHLGNIQFSGGSH---------GDTDSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDIL 111 (144)
Q Consensus 41 L~lGni~f~~~~~---------~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL 111 (144)
|.-|+|.....+. ..++.+|+...-.-.++++|.||-..|+..-.+.. ..+ .+...+.+.+++
T Consensus 483 Lp~g~iilTeaG~~ik~Alsg~p~~e~~g~~~PVtP~~~rVL~Ai~~~g~lyvKe~K------vRi--~pk~~ke~~K~s 554 (591)
T PF04458_consen 483 LPNGMIILTEAGELIKRALSGVPEQEILGFGFPVTPTIYRVLKAIREVGTLYVKEKK------VRI--LPKNIKEAIKLS 554 (591)
T ss_pred cCCCcEEEehhhHHHHHHHhcCCcccccccCCCCCHHHHHHHHHHHHhhhhhhhhhh------hhc--CccchHHHHHhc
Confidence 3457776654332 11223344433344589999999999998866542 112 234466688999
Q ss_pred cCCCHHHHHHHHhh
Q psy9984 112 YNIDRDEFRRCLTH 125 (144)
Q Consensus 112 ~gv~~~~L~~aLt~ 125 (144)
|++++.+.++|..
T Consensus 555 -gL~~e~f~kaL~~ 567 (591)
T PF04458_consen 555 -GLTPEEFKKALEV 567 (591)
T ss_pred -CCCHHHHHHHHHH
Confidence 9999999999973
No 74
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=26.64 E-value=82 Score=18.43 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
+..+|+++ ||++..|.+|--
T Consensus 3 ~~eva~~~-gvs~~tlr~w~~ 22 (68)
T cd01104 3 IGAVARLT-GVSPDTLRAWER 22 (68)
T ss_pred HHHHHHHH-CcCHHHHHHHHH
Confidence 46789999 999999998864
No 75
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.76 E-value=93 Score=18.77 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHh
Q psy9984 103 SLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 103 ~l~~~a~LL~gv~~~~L~~aLt 124 (144)
.+..+|+.| ||++..+..|=.
T Consensus 24 ~lkdIA~~L-gvs~~tIr~WK~ 44 (60)
T PF10668_consen 24 KLKDIAEKL-GVSESTIRKWKS 44 (60)
T ss_pred cHHHHHHHH-CCCHHHHHHHhh
Confidence 477899999 999999887744
No 76
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=25.62 E-value=4e+02 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCChh------cHHHHH--------HHHHHHhhcCCee
Q psy9984 13 FCQHNAIYTYCGFSAL------DQEVIF--------RILSSILHLGNIQ 47 (144)
Q Consensus 13 f~~~~~a~~i~G~~~~------e~~~if--------~~la~iL~lGni~ 47 (144)
-+++++||-.|||.+- +-.+|| .+|...+|||.+.
T Consensus 53 i~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glp 101 (529)
T PRK06253 53 IERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLP 101 (529)
T ss_pred HHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCC
Confidence 4678889999999842 112333 5677778887663
No 77
>KOG4314|consensus
Probab=25.54 E-value=1e+02 Score=23.70 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=33.9
Q ss_pred hcHHHHHHHHHHHhhcCCeeeecC-CC-CCCcccccchhhH----HHHHHHHHHHhcccCeeeecC
Q psy9984 28 LDQEVIFRILSSILHLGNIQFSGG-SH-GDTDSCSFSALDQ----EVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 28 ~e~~~if~~la~iL~lGni~f~~~-~~-~~~~~~g~~~~~~----~~i~~ila~ILhlGni~F~~~ 87 (144)
.++..+|++++++|-+|.+..-.- ++ .+++-+|+...-. ..+++++=. ..+||..|.+.
T Consensus 102 ~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK-~~iGnAn~Gda 166 (290)
T KOG4314|consen 102 GDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAALYKVLFK-MFIGNANFGDA 166 (290)
T ss_pred ccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhccCcchhH
Confidence 466788999999999998866543 32 4444445443221 112222211 24788888654
No 78
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=25.05 E-value=60 Score=19.03 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=15.6
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
++.+.+..+|+.| |++++++.
T Consensus 42 p~~~~l~~l~~~l-~~~~~~~~ 62 (64)
T PF13560_consen 42 PSPDTLQRLARAL-GVPPDERA 62 (64)
T ss_dssp -BHHHHHHHHHHT-T--HHHHH
T ss_pred CCHHHHHHHHHHH-CcCHHHHc
Confidence 4678899999999 99988775
No 79
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=24.84 E-value=2.4e+02 Score=19.55 Aligned_cols=58 Identities=14% Similarity=0.311 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhcc---cCeeeecCCCCCCCcceecCChhHHHHHHHHhcCCCHHHHHHHHhh
Q psy9984 63 ALDQEVIFRILSSILHL---GNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTH 125 (144)
Q Consensus 63 ~~~~~~i~~ila~ILhl---Gni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~gv~~~~L~~aLt~ 125 (144)
......+++.+..++.+ -|+-+.... .....+ .++..+...+.+| |++.++-.++++.
T Consensus 89 ~~~r~~~~~~~~~l~~~~~~~~iiiSSgA---~~~~el-r~P~dv~~l~~~l-Gl~~~~a~~avs~ 149 (150)
T PF01876_consen 89 GSNRRNFISNARRLIRLTKKKNIIISSGA---SSPLEL-RSPRDVINLLALL-GLSEEEAKKAVST 149 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--EEEE------SSGGG----HHHHHHHHHHT-T--HHHHHHTTTH
T ss_pred cHHHHHHHHHHHHHHHHhCCCCEEEEcCC---CChhhC-cCHHHHHHHHHHh-CCCHHHHHHHHhc
Confidence 33444555655555555 367776653 333445 5677888999999 9999999988874
No 80
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=24.66 E-value=1.2e+02 Score=15.93 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=17.0
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCL 123 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aL 123 (144)
...+.+..+|+.. |++.++|.++=
T Consensus 4 ~~gDtl~~IA~~~-~~~~~~l~~~N 27 (44)
T PF01476_consen 4 QPGDTLWSIAKRY-GISVDELMELN 27 (44)
T ss_dssp -TT--HHHHHHHT-TS-HHHHHHHC
T ss_pred CcCCcHHHHHhhh-hhhHhHHHHhc
Confidence 3456788999999 99999998764
No 81
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=24.54 E-value=1.2e+02 Score=17.01 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhc
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHR 126 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r 126 (144)
++.+|+++ ||+..-..++|-.+
T Consensus 2 i~dIA~~a-gvS~~TVSr~ln~~ 23 (46)
T PF00356_consen 2 IKDIAREA-GVSKSTVSRVLNGP 23 (46)
T ss_dssp HHHHHHHH-TSSHHHHHHHHTTC
T ss_pred HHHHHHHH-CcCHHHHHHHHhCC
Confidence 57899999 99999999998765
No 82
>COG2886 Uncharacterized small protein [Function unknown]
Probab=23.95 E-value=1.1e+02 Score=20.06 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q psy9984 102 GSLAAFCDILYNIDRDEFRRCLTHRKITTM 131 (144)
Q Consensus 102 ~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ 131 (144)
.++..+|+|. |++..++..-|-.|.+...
T Consensus 42 vSlg~Aaela-~~sl~ef~~eL~~R~i~l~ 70 (88)
T COG2886 42 VSLGRAAELA-GMSLNEFEEELRKRGIPLY 70 (88)
T ss_pred hHHHHHHHHh-cCCHHHHHHHHHHhCCCcc
Confidence 4588999999 9999999999999887664
No 83
>COG4197 Uncharacterized protein conserved in bacteria, prophage-related [Function unknown]
Probab=23.90 E-value=79 Score=20.94 Aligned_cols=24 Identities=13% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 105 AAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 105 ~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
.++|.|| ||.+.-+.+|..-++-.
T Consensus 16 ~a~a~LL-gvsp~~vnQw~~g~r~~ 39 (96)
T COG4197 16 KALARLL-GVSPPSVNQWIKGRRQV 39 (96)
T ss_pred HHHHHHH-ccCchHHHHHhhheeec
Confidence 4678999 99999999998876643
No 84
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=23.57 E-value=70 Score=18.24 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHhh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTH 125 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~ 125 (144)
+..+|+.| |+++.++.+.|..
T Consensus 6 V~elAk~l-~v~~~~ii~~l~~ 26 (54)
T PF04760_consen 6 VSELAKEL-GVPSKEIIKKLFK 26 (54)
T ss_dssp TTHHHHHH-SSSHHHHHHHH-H
T ss_pred HHHHHHHH-CcCHHHHHHHHHH
Confidence 45789999 9999999998844
No 85
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=23.42 E-value=1.2e+02 Score=16.56 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=16.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHh
Q psy9984 102 GSLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 102 ~~l~~~a~LL~gv~~~~L~~aLt 124 (144)
.....+|+.| ||+..-+.+++-
T Consensus 18 ~s~~~ia~~l-gvs~~Tv~~w~k 39 (50)
T PF13384_consen 18 WSIREIAKRL-GVSRSTVYRWIK 39 (50)
T ss_dssp --HHHHHHHH-TS-HHHHHHHHT
T ss_pred CCHHHHHHHH-CcCHHHHHHHHH
Confidence 3567899999 999999988864
No 86
>COG3645 Uncharacterized phage-encoded protein [Function unknown]
Probab=22.93 E-value=1.2e+02 Score=21.47 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q psy9984 103 SLAAFCDILYNIDRDEFRRCLTHRKITTM 131 (144)
Q Consensus 103 ~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ 131 (144)
.+..+|++| ++-+..|..||..+.+..+
T Consensus 49 ~~re~AK~l-kige~~l~~~L~e~~~l~~ 76 (135)
T COG3645 49 LFRELAKLL-KIGENRLFAWLRENKYLIK 76 (135)
T ss_pred eHHHHHHHH-ccCHHHHHHHHHHCCEEEE
Confidence 478999999 9999999999997776554
No 87
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=22.84 E-value=2e+02 Score=17.71 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCC
Q psy9984 11 VRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGN 45 (144)
Q Consensus 11 ~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGn 45 (144)
.|+.+-..+|.-+||+......+..-|--++ =||
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~lY-~~n 42 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLKLY-DGN 42 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCC
Confidence 7888888999999999998776655544443 244
No 88
>COG2522 Predicted transcriptional regulator [General function prediction only]
Probab=22.08 E-value=1e+02 Score=21.25 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
-..+|+|| |+++.+..+-|-.+.
T Consensus 25 q~~iA~LL-GltqaAVS~Yls~kr 47 (119)
T COG2522 25 QYRIAKLL-GLTQAAVSQYLSGKR 47 (119)
T ss_pred HHHHHHHh-CCCHHHHHHHHccCC
Confidence 34799999 999999988886654
No 89
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=21.63 E-value=22 Score=26.44 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.5
Q ss_pred ccccchhhHHHHHHHHHHHhcccCee
Q psy9984 58 SCSFSALDQEVIFRILSSILHLGNIQ 83 (144)
Q Consensus 58 ~~g~~~~~~~~i~~ila~ILhlGni~ 83 (144)
..|++++|++.|-+==.+|+|+||+.
T Consensus 88 ~fgl~~~E~~qI~~HklAV~h~GNvk 113 (194)
T TIGR03264 88 TFGLTPEEIEQINRHKLAVIHLGNVK 113 (194)
T ss_pred ccCCCHHHHHHHhhcCEEEEEeCCHH
Confidence 57899999988888888999999974
No 90
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=21.50 E-value=86 Score=16.20 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHhcCCCHHHH
Q psy9984 100 SSGSLAAFCDILYNIDRDEF 119 (144)
Q Consensus 100 ~~~~l~~~a~LL~gv~~~~L 119 (144)
+...+..+++.| |++++.|
T Consensus 38 ~~~~~~~i~~~~-~~~~~~~ 56 (56)
T smart00530 38 SLETLKKLAKAL-GVSLDEL 56 (56)
T ss_pred CHHHHHHHHHHh-CCChhhC
Confidence 566788999999 9988653
No 91
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=21.46 E-value=87 Score=18.69 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=12.6
Q ss_pred hHHHHHHHHhcCCCHHHH
Q psy9984 102 GSLAAFCDILYNIDRDEF 119 (144)
Q Consensus 102 ~~l~~~a~LL~gv~~~~L 119 (144)
.-+..-|+.| |+|++++
T Consensus 46 g~lr~Ya~~L-gld~~~l 62 (62)
T PF13413_consen 46 GYLRKYARFL-GLDPDEL 62 (62)
T ss_dssp HHHHHHHHHT-T--HHHH
T ss_pred HHHHHHHHHh-CcCcccC
Confidence 5688999999 9999875
No 92
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=20.56 E-value=1.3e+02 Score=17.34 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHh
Q psy9984 103 SLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 103 ~l~~~a~LL~gv~~~~L~~aLt 124 (144)
.+..+|+.| ++++..+.+.|-
T Consensus 15 s~~~AA~~l-~is~~~vs~~i~ 35 (60)
T PF00126_consen 15 SISAAAEEL-GISQSAVSRQIK 35 (60)
T ss_dssp SHHHHHHHC-TSSHHHHHHHHH
T ss_pred CHHHHHHHh-hccchHHHHHHH
Confidence 466788888 888877766653
No 93
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.51 E-value=1.2e+02 Score=16.55 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHh
Q psy9984 103 SLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 103 ~l~~~a~LL~gv~~~~L~~aLt 124 (144)
.+..+|..+ ||+...+..|+-
T Consensus 14 s~~~~a~~~-gis~~tv~~w~~ 34 (52)
T PF13518_consen 14 SVREIAREF-GISRSTVYRWIK 34 (52)
T ss_pred CHHHHHHHH-CCCHhHHHHHHH
Confidence 577899999 999999988874
Done!