Query psy9984
Match_columns 144
No_of_seqs 282 out of 2001
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:42:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7j_A Myosin VA; motor protei 99.9 2.3E-25 8E-30 193.2 -2.7 138 3-144 210-396 (795)
2 1kk8_A Myosin heavy chain, str 99.9 3.6E-25 1.2E-29 192.9 -3.6 138 3-144 233-419 (837)
3 2dfs_A Myosin-5A; myosin-V, in 99.9 6.5E-25 2.2E-29 195.6 -2.8 138 3-144 210-396 (1080)
4 1w9i_A Myosin II heavy chain; 99.9 1.1E-24 3.9E-29 188.1 -2.0 137 3-144 229-414 (770)
5 2ycu_A Non muscle myosin 2C, a 99.9 1.8E-24 6E-29 191.6 -1.5 137 3-144 207-391 (995)
6 1lkx_A Myosin IE heavy chain; 99.9 7.6E-25 2.6E-29 187.8 -4.0 140 3-144 150-345 (697)
7 4db1_A Myosin-7; S1DC, cardiac 99.9 7.5E-25 2.6E-29 189.6 -4.2 138 3-144 234-420 (783)
8 1i84_S Smooth muscle myosin he 99.9 1.4E-24 4.7E-29 195.3 -3.6 138 3-144 237-422 (1184)
9 1g8x_A Myosin II heavy chain f 99.9 4.1E-24 1.4E-28 189.3 -0.9 137 3-144 229-414 (1010)
10 2v26_A Myosin VI; calmodulin-b 99.8 3.2E-23 1.1E-27 179.8 -3.0 85 58-144 322-412 (784)
11 4anj_A Unconventional myosin-V 99.8 3E-23 1E-27 184.0 -4.0 85 58-144 326-416 (1052)
12 1lkx_A Myosin IE heavy chain; 99.0 2.2E-09 7.4E-14 92.4 9.2 114 8-128 241-369 (697)
13 4anj_A Unconventional myosin-V 98.9 2E-09 6.7E-14 96.0 7.5 115 8-129 312-441 (1052)
14 4db1_A Myosin-7; S1DC, cardiac 98.9 2.1E-09 7.3E-14 93.3 7.1 113 8-129 324-445 (783)
15 2v26_A Myosin VI; calmodulin-b 98.9 5E-09 1.7E-13 91.2 8.6 116 8-129 308-437 (784)
16 1kk8_A Myosin heavy chain, str 98.9 8.5E-09 2.9E-13 90.2 9.8 112 8-128 323-443 (837)
17 1w7j_A Myosin VA; motor protei 98.8 4.1E-09 1.4E-13 91.8 7.1 111 8-128 300-420 (795)
18 1w9i_A Myosin II heavy chain; 98.8 4.8E-09 1.7E-13 91.0 7.3 111 8-128 319-438 (770)
19 1i84_S Smooth muscle myosin he 98.8 1.2E-08 4E-13 92.2 9.9 113 8-129 326-447 (1184)
20 1g8x_A Myosin II heavy chain f 98.8 9.4E-09 3.2E-13 91.5 9.1 111 8-128 319-438 (1010)
21 2ycu_A Non muscle myosin 2C, a 98.8 1.2E-08 4.1E-13 90.8 9.0 112 8-128 295-415 (995)
22 2dfs_A Myosin-5A; myosin-V, in 98.8 1.3E-08 4.6E-13 91.1 8.6 111 8-128 300-420 (1080)
23 2da7_A Zinc finger homeobox pr 63.3 7.8 0.00027 23.4 3.2 28 99-127 30-57 (71)
24 3kz3_A Repressor protein CI; f 40.6 11 0.00038 22.1 1.3 26 99-125 52-77 (80)
25 3f6w_A XRE-family like protein 40.1 35 0.0012 19.7 3.6 26 99-125 54-79 (83)
26 1ufm_A COP9 complex subunit 4; 39.1 26 0.0009 21.5 2.9 21 103-124 32-52 (84)
27 2hin_A GP39, repressor protein 36.2 29 0.001 20.6 2.7 24 104-128 13-36 (71)
28 3nau_A Zinc fingers and homeob 34.6 44 0.0015 19.7 3.2 30 99-129 29-58 (66)
29 2r1j_L Repressor protein C2; p 34.6 37 0.0013 18.5 3.0 22 99-121 45-66 (68)
30 2xi8_A Putative transcription 33.6 38 0.0013 18.3 2.9 21 99-120 41-61 (66)
31 3b7h_A Prophage LP1 protein 11 33.2 40 0.0014 19.1 3.0 21 99-120 48-68 (78)
32 3qq6_A HTH-type transcriptiona 32.9 42 0.0014 19.5 3.1 22 99-121 51-72 (78)
33 1adr_A P22 C2 repressor; trans 31.6 49 0.0017 18.5 3.2 22 99-121 45-66 (76)
34 2b5a_A C.BCLI; helix-turn-heli 29.6 50 0.0017 18.5 3.0 22 99-121 50-71 (77)
35 3e7l_A Transcriptional regulat 29.0 54 0.0018 18.4 3.0 21 104-125 35-55 (63)
36 1j9i_A GPNU1 DBD;, terminase s 28.9 48 0.0016 18.9 2.8 22 104-126 5-26 (68)
37 3s8q_A R-M controller protein; 27.6 56 0.0019 18.8 3.0 23 99-122 51-73 (82)
38 3omt_A Uncharacterized protein 26.5 30 0.001 19.6 1.5 21 99-120 48-68 (73)
39 1akh_A Protein (mating-type pr 26.3 82 0.0028 17.3 3.5 28 99-127 30-57 (61)
40 2k53_A A3DK08 protein; NESG, C 25.8 52 0.0018 19.6 2.6 24 100-124 37-60 (76)
41 2ofy_A Putative XRE-family tra 25.6 58 0.002 18.9 2.8 22 99-121 55-76 (86)
42 1g2h_A Transcriptional regulat 24.8 52 0.0018 18.4 2.4 20 104-124 36-55 (61)
43 1k61_A Mating-type protein alp 24.7 94 0.0032 17.0 3.5 29 99-128 26-54 (60)
44 3g5g_A Regulatory protein; tra 23.7 69 0.0024 19.6 3.0 23 99-122 68-90 (99)
45 1du6_A PBX1, homeobox protein 23.6 76 0.0026 17.7 3.0 30 99-129 31-60 (64)
46 2lfc_A Fumarate reductase, fla 23.5 46 0.0016 22.5 2.3 23 101-124 95-117 (160)
47 2glo_A Brinker CG9653-PA; prot 23.3 76 0.0026 17.3 2.9 20 104-124 28-47 (59)
48 3op9_A PLI0006 protein; struct 23.3 75 0.0026 19.6 3.2 22 99-121 49-70 (114)
49 2ewt_A BLDD, putative DNA-bind 22.9 39 0.0013 18.8 1.5 20 99-119 50-69 (71)
50 1umq_A Photosynthetic apparatu 22.9 76 0.0026 19.2 2.9 20 104-124 57-76 (81)
51 1ig7_A Homeotic protein MSX-1; 22.8 1E+02 0.0035 16.7 3.4 28 99-127 25-52 (58)
52 3t76_A VANU, transcriptional r 22.7 37 0.0013 20.7 1.5 20 100-120 64-83 (88)
53 3rkq_A Homeobox protein NKX-2. 22.2 1E+02 0.0035 16.5 3.5 28 99-127 27-54 (58)
54 1tc3_C Protein (TC3 transposas 22.2 83 0.0028 15.5 3.0 20 104-124 24-43 (51)
55 3bs3_A Putative DNA-binding pr 21.6 42 0.0014 18.8 1.5 21 99-120 50-70 (76)
56 1bw5_A ISL-1HD, insulin gene e 21.3 1.1E+02 0.0039 17.0 3.5 33 99-132 28-60 (66)
57 2wus_R RODZ, putative uncharac 21.0 85 0.0029 19.9 3.1 22 102-124 56-77 (112)
58 2k40_A Homeobox expressed in E 20.8 1.2E+02 0.0041 17.0 3.5 31 99-130 26-56 (67)
59 1wh7_A ZF-HD homeobox family p 20.7 1.1E+02 0.0039 18.2 3.5 32 99-131 46-77 (80)
60 3a03_A T-cell leukemia homeobo 20.5 1.2E+02 0.0039 16.4 3.5 29 99-128 22-50 (56)
61 1x2m_A LAG1 longevity assuranc 20.3 80 0.0027 18.3 2.6 32 99-131 26-57 (64)
62 2da2_A Alpha-fetoprotein enhan 20.3 1.2E+02 0.0039 17.2 3.3 32 99-131 32-63 (70)
63 1r69_A Repressor protein CI; g 20.1 96 0.0033 16.7 2.9 17 104-121 45-61 (69)
64 3kxa_A NGO0477 protein, putati 20.1 1.1E+02 0.0038 20.1 3.6 26 99-125 108-133 (141)
65 3f52_A CLP gene regulator (CLG 20.0 1E+02 0.0035 19.0 3.3 23 99-122 68-90 (117)
No 1
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.89 E-value=2.3e-25 Score=193.18 Aligned_cols=138 Identities=33% Similarity=0.513 Sum_probs=108.0
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
-|+||||+|||++++++.+ ++|.. .+|+ +|||+.+.+. |+|.+.
T Consensus 210 kT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~ 289 (795)
T 1w7j_A 210 KTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK 289 (795)
T ss_dssp CCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHH
T ss_pred cCCCCCCccccceEEEEEECCCCCEeeeeceEEecccceEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCcccc
Confidence 4899999999999987754 33333 3455 6999877654 344322
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
.+.+.++.+.+ .+||+++++..||+++|||||||||+|.... .+.|.+..+++.++.+|+|| |
T Consensus 290 ~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~---~~~~~v~~~~~~l~~~a~LL-g 365 (795)
T 1w7j_A 290 QGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRD---SDSCAIPPKHDPLTIFCDLM-G 365 (795)
T ss_dssp TTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEE---TTEEECCTTCHHHHHHHHHH-T
T ss_pred CCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecC---CcceeecCChHHHHHHHHHh-C
Confidence 22222221111 5999999999999999999999999998763 46677756778999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.++||.+++|++++|+
T Consensus 366 v~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA 396 (795)
T 1w7j_A 366 VDYEEMAHWLCHRKLATATETYIKPISKLHA 396 (795)
T ss_dssp CCHHHHHHHHSEEEEECSSCEEEEECCHHHH
T ss_pred CCHHHHHHHhcccEEEeCCceecCCCCHHHH
Confidence 9999999999999999999999999999874
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.88 E-value=3.6e-25 Score=192.87 Aligned_cols=138 Identities=15% Similarity=0.224 Sum_probs=101.6
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhc-CC-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHL-GN------- 45 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~l-Gn------- 45 (144)
-|+||||+|||++++++.+ ++|.. .+|+ +|||+.+.+. |+| ++
T Consensus 233 kT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL 312 (837)
T 1kk8_A 233 KTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFI 312 (837)
T ss_dssp CCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTT
T ss_pred cCCCCCCCCCceeEEEEEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccc
Confidence 3899999999999987754 23333 3455 7999877543 445 32
Q ss_pred ----eeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 46 ----IQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 46 ----i~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
+.+.+.+|.+.+ .+||+.+++..||+++|||||||||+|.... +++.+.+ .+.+.++.+|+|| |
T Consensus 313 ~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~--~~~~~~~-~~~~~l~~~a~LL-g 388 (837)
T 1kk8_A 313 NQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRP--REEQAES-DGTAEAEKVAFLC-G 388 (837)
T ss_dssp CSSCSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC------CCCEE-SCSHHHHHHHHHH-T
T ss_pred cCCCcccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecC--CCCcccc-CCHHHHHHHHHHH-C
Confidence 222222221111 5999999999999999999999999998764 3456666 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.+++|.+++|++++|+
T Consensus 389 v~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA 419 (837)
T 1kk8_A 389 INAGDLLKALLKPKVKVGTEMVTKGQNMNQV 419 (837)
T ss_dssp SCHHHHHHHHHSCEEC----CEECCCCHHHH
T ss_pred CCHHHHHHHhcCcEEEcCCceEEeCCCHHHH
Confidence 9999999999999999999999999999874
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.88 E-value=6.5e-25 Score=195.64 Aligned_cols=138 Identities=34% Similarity=0.523 Sum_probs=104.1
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCCe-------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGNI------- 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGni------- 46 (144)
-|++|||+|||++++++.+ ++|.. .+|+ +||||.+.+. |+|++.
T Consensus 210 kT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKsRVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~ 289 (1080)
T 2dfs_A 210 KTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK 289 (1080)
T ss_dssp EETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCGGGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTS
T ss_pred cCCCCCCccccceeEEEEECCCCCEeeecceeEeecCceeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCccc
Confidence 3899999999999987754 23332 3455 7999877654 344332
Q ss_pred -----eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 47 -----QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 47 -----~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
.+.+.+|...+ .+||+++++..||+++|||||||||+|... +.+.|.+..+++.++.+|.|| |
T Consensus 290 ~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~---~~~~~~~~~~~~~l~~~a~LL-g 365 (1080)
T 2dfs_A 290 QGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASR---DSDSCAIPPKHDPLTIFCDLM-G 365 (1080)
T ss_dssp TTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEE---TTTEEECCSSCHHHHHHHHHH-T
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEec---CCcceeecCChHHHHHHHHHh-C
Confidence 12221211111 599999999999999999999999999876 356677756788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.++||.+++|++++|+
T Consensus 366 v~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa 396 (1080)
T 2dfs_A 366 VDYEEMAHWLCHRKLATATETYIKPISKLHA 396 (1080)
T ss_dssp CCHHHHHHHHHEEEECC----EEEECCHHHH
T ss_pred CCHHHHHHHhcccEEEeCCceEEeCCCHHHH
Confidence 9999999999999999999999999999874
No 4
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.88 E-value=1.1e-24 Score=188.08 Aligned_cols=137 Identities=25% Similarity=0.360 Sum_probs=106.2
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCC--------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGN-------- 45 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGn-------- 45 (144)
-|+||||+|||++++++.+ ++|.. .+|+ +|||+.+.+. |+|.+
T Consensus 229 kT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll 308 (770)
T 1w9i_A 229 KTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN 308 (770)
T ss_dssp CCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTS
T ss_pred cCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeecccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccc
Confidence 4899999999999887754 22322 3455 7999777553 34433
Q ss_pred ----eeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 46 ----IQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 46 ----i~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
+.+.+.++.+.+ .+||+++++..||+++|||||||||+|... +++.+.+ .+.+.++.+|+|| |
T Consensus 309 ~~g~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~~~---~~~~~~~-~~~~~l~~~a~LL-g 383 (770)
T 1w9i_A 309 QSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKG---AGEGAVL-KDKTALNAASTVF-G 383 (770)
T ss_dssp SSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCEEC---SSSSEEC-SCCHHHHHHHHHH-T
T ss_pred cCCccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEecC---CCCcccc-CChHHHHHHHHHh-C
Confidence 222222221111 599999999999999999999999999832 3555666 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.+++|.+++|++++|+
T Consensus 384 v~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA 414 (770)
T 1w9i_A 384 VNPSVLEKALMEPRILAGRDLVAQHLNVEKS 414 (770)
T ss_dssp CCHHHHHHHHHSCEEEETTEEEECCCCHHHH
T ss_pred CCHHHHHHHhhCcEEEeCCeeEEeCCCHHHH
Confidence 9999999999999999999999999999874
No 5
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.88 E-value=1.8e-24 Score=191.63 Aligned_cols=137 Identities=22% Similarity=0.302 Sum_probs=107.0
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhc----------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHL---------- 43 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~l---------- 43 (144)
-|++|||+|||++++++.+ ++|.. .+|+ +||||.+.+. |+|
T Consensus 207 kT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~ 286 (995)
T 2ycu_A 207 KTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLT 286 (995)
T ss_dssp CCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTST
T ss_pred cCCCCCCCCccceEEEEEECCCCCEeeeEEEEEeccCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHccccc
Confidence 3899999999999987754 33333 3454 7999877554 344
Q ss_pred -CCeeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcCC
Q psy9984 44 -GNIQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNI 114 (144)
Q Consensus 44 -Gni~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~gv 114 (144)
|++...+ ++.+.+ .+||+++++..||+++|||||||||+|.... +++.+.+ .+.+.++.+|.|| ||
T Consensus 287 ~~~~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~--~~~~~~~-~~~~~l~~~a~LL-gv 361 (995)
T 2ycu_A 287 NGPSSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRER--NTDQATM-PDNTAAQKLCRLL-GL 361 (995)
T ss_dssp TCSCSSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECS--SSCCEEC-SCCHHHHHHHHHT-TC
T ss_pred CCccccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecC--CCccccc-CChHHHHHHHHHH-CC
Confidence 3322222 111111 5999999999999999999999999998764 3455665 6788999999999 99
Q ss_pred CHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 115 DRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 115 ~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
++++|.++||+|++.+++|.+++|++++|+
T Consensus 362 ~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa 391 (995)
T 2ycu_A 362 GVTDFSRALLTPRIKVGRDYVQKAQTKEQA 391 (995)
T ss_dssp CHHHHHHHHHSCEEESSSSEEECCCCHHHH
T ss_pred CHHHHHHHhcCcEEEcCCceecCCCCHHHH
Confidence 999999999999999999999999999874
No 6
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.87 E-value=7.6e-25 Score=187.80 Aligned_cols=140 Identities=25% Similarity=0.275 Sum_probs=100.5
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcC-Ce------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLG-NI------ 46 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lG-ni------ 46 (144)
-|+||||+|||++++++.+ ++|.. .+|+ +|||+.+.+. |+|. +.
T Consensus 150 kT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL 229 (697)
T 1lkx_A 150 KTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYL 229 (697)
T ss_dssp CCSSCSSCBCSEEEEEEEECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHH
T ss_pred ccCCCCCcchhheeEEEEECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccc
Confidence 4899999999999987754 22222 3455 7999877543 4553 22
Q ss_pred ------eeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecC--CCCCCCcceecCChhHHHHHHHH
Q psy9984 47 ------QFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGG--SHGDTDSCSIAPSSGSLAAFCDI 110 (144)
Q Consensus 47 ------~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~--~~~~~~~~~v~~~~~~l~~~a~L 110 (144)
...+.++.+.+ .+||+++++..||+++|||||||||+|... ..++.+.|.+ .+.+.++.+|+|
T Consensus 230 ~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v-~~~~~l~~~a~L 308 (697)
T 1lkx_A 230 KKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKV-SDTKSLAAAASC 308 (697)
T ss_dssp HHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEE-SSHHHHHHHHHH
T ss_pred cCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCccee-CCHHHHHHHHHh
Confidence 22222221111 599999999999999999999999999872 1113366777 688999999999
Q ss_pred hcCCCHHHHHHHHhhceeeeC----CcEEEecCCccCC
Q psy9984 111 LYNIDRDEFRRCLTHRKITTM----QESFNKPMSVFEM 144 (144)
Q Consensus 111 L~gv~~~~L~~aLt~r~~~~~----ge~i~~~ls~~q~ 144 (144)
| ||++++|.++||+|++.++ ||.+.+|++++|+
T Consensus 309 L-gv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA 345 (697)
T 1lkx_A 309 L-KTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQA 345 (697)
T ss_dssp H-TSCHHHHHHHHHBCC----------CCCCBCCHHHH
T ss_pred h-CCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHH
Confidence 9 9999999999999999999 9999999999874
No 7
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.87 E-value=7.5e-25 Score=189.59 Aligned_cols=138 Identities=15% Similarity=0.263 Sum_probs=100.9
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhc----------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHL---------- 43 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~l---------- 43 (144)
-|+||||+|||++++++.+ ++|.. .+|+ +|||+.+.+. |+|
T Consensus 234 kT~rNdNSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl 313 (783)
T 4db1_A 234 KTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFI 313 (783)
T ss_dssp CCSSCTTEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGG
T ss_pred ccCCCCCCCccceeEEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccc
Confidence 4899999999999988754 23332 3455 7999877543 334
Q ss_pred --CCeeeecCCCCCC--------cccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 44 --GNIQFSGGSHGDT--------DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 44 --Gni~f~~~~~~~~--------~~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
|++.+.+.++.+. ..+||+++++..||+++|||||||||+|.... +++.+.+ .+.+.++.+|+|| |
T Consensus 314 ~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~--~~~~~~~-~~~~~l~~~a~LL-g 389 (783)
T 4db1_A 314 SQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQ--REEQAEP-DGTEEADKSAYLM-G 389 (783)
T ss_dssp CSSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECT--TSSCEEE-SCCHHHHHHHHHT-T
T ss_pred cCCCcccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccC--CCccccc-CChHHHHHHHHHh-C
Confidence 2222222222111 26999999999999999999999999998764 3445555 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.+++|.+++|++++|+
T Consensus 390 v~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA 420 (783)
T 4db1_A 390 LNSADLLKGLCHPRVKVGNEYVTKGQNVQQV 420 (783)
T ss_dssp CCHHHHHHHHHSCC------CCCCCCCHHHH
T ss_pred CCHHHHHHhhcceEEEeCCeeEeeCCCHHHH
Confidence 9999999999999999999999999999874
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.87 E-value=1.4e-24 Score=195.31 Aligned_cols=138 Identities=24% Similarity=0.367 Sum_probs=107.7
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhc----------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHL---------- 43 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~l---------- 43 (144)
-|++|||+||||+++++.+ ++|.. .+|+ +||||.+.+. |+|
T Consensus 237 kT~rN~NSSRfgk~~~i~f~~~g~i~ga~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~ 316 (1184)
T 1i84_S 237 KTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLS 316 (1184)
T ss_dssp EETTEEEEECSCEEEEEEECSSSCEEEEEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCT
T ss_pred cCCCCccccccceeEEEEECCCCCEeeeEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccC
Confidence 3899999999999987754 23333 3455 7999877553 334
Q ss_pred -CCeeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcCC
Q psy9984 44 -GNIQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNI 114 (144)
Q Consensus 44 -Gni~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~gv 114 (144)
|++.+.+.++...+ .+||+.+++..||+++|||||||||+|.... +++.+.+ .+.+.++.+|.|| ||
T Consensus 317 ~~~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~--~~~~~~~-~~~~~~~~~a~lL-g~ 392 (1184)
T 1i84_S 317 NGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKER--NTDQASM-PDNTAAQKVCHLM-GI 392 (1184)
T ss_dssp TSSCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCT--TTSCCBC-CCSHHHHHHHHHT-TS
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccC--CCcCccc-CChHHHHHHHHHH-CC
Confidence 33322222222212 5999999999999999999999999998764 3455666 6788999999999 99
Q ss_pred CHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 115 DRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 115 ~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
++++|.++||+|++.+++|.+++|++++|+
T Consensus 393 ~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a 422 (1184)
T 1i84_S 393 NVTDFTRSILTPRIKVGRDVVQKAQTKEQA 422 (1184)
T ss_dssp CHHHHHHHHHSCCCCCTTSCCCCCCCHHHH
T ss_pred CHHHHHHHhcCcEEEeCCceEecCCCHHHH
Confidence 999999999999999999999999998874
No 9
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.87 E-value=4.1e-24 Score=189.34 Aligned_cols=137 Identities=25% Similarity=0.355 Sum_probs=107.2
Q ss_pred cchhcccHHHHHHHHHHHH-----HcCCC---------------hhcH-HHHHHHHHHH--------hhcCC--------
Q psy9984 3 PAVLYNLQVRFCQHNAIYT-----YCGFS---------------ALDQ-EVIFRILSSI--------LHLGN-------- 45 (144)
Q Consensus 3 ~t~~~~n~~~f~~~~~a~~-----i~G~~---------------~~e~-~~if~~la~i--------L~lGn-------- 45 (144)
-|++|||||||++++++.+ ++|.. .+|+ +||||.+.+. |+|.+
T Consensus 229 kT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~ 308 (1010)
T 1g8x_A 229 KTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLN 308 (1010)
T ss_dssp CCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGS
T ss_pred cCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCCceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhc
Confidence 4899999999999987754 23332 3455 7999877553 34432
Q ss_pred ----eeeecCCCCCCc--------ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceecCChhHHHHHHHHhcC
Q psy9984 46 ----IQFSGGSHGDTD--------SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYN 113 (144)
Q Consensus 46 ----i~f~~~~~~~~~--------~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~~~~~~l~~~a~LL~g 113 (144)
+...+.++.+.+ .+||+.+++..||+++|||||||||+|.... .+.+.+ .+.+.++.+|.|| |
T Consensus 309 ~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~---~~~~~~-~~~~~l~~~a~LL-g 383 (1010)
T 1g8x_A 309 QSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGA---GEGAVL-KDKTALNAASTVF-G 383 (1010)
T ss_dssp SSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCT---TSSCBC-SCCHHHHHHHHHH-T
T ss_pred CCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecC---CCcccc-CChHHHHHHHHHH-C
Confidence 222222222222 5999999999999999999999999998764 256666 6788999999999 9
Q ss_pred CCHHHHHHHHhhceeeeCCcEEEecCCccCC
Q psy9984 114 IDRDEFRRCLTHRKITTMQESFNKPMSVFEM 144 (144)
Q Consensus 114 v~~~~L~~aLt~r~~~~~ge~i~~~ls~~q~ 144 (144)
|++++|.++||+|++.+++|.+++|++++|+
T Consensus 384 v~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa 414 (1010)
T 1g8x_A 384 VNPSVLEKALMEPRILAGRDLVAQHLNVEKS 414 (1010)
T ss_dssp SCHHHHHHHHHSCEEESSSSEEECCCCSHHH
T ss_pred CCHHHHHHHHhCcEEEeCCeeEEeCCCHHHH
Confidence 9999999999999999999999999999874
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.84 E-value=3.2e-23 Score=179.75 Aligned_cols=85 Identities=25% Similarity=0.509 Sum_probs=68.5
Q ss_pred ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceec-CChhHHHHHHHHhcCCCHHHHHHHHhhceee-----eC
Q psy9984 58 SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIA-PSSGSLAAFCDILYNIDRDEFRRCLTHRKIT-----TM 131 (144)
Q Consensus 58 ~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~-~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~-----~~ 131 (144)
.+||+++++..||+++|||||||||+|.+.. +..++|.+. .+.+.++.+|+|| ||++++|.++||+|++. ++
T Consensus 322 ~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~-~~~~~~~v~~~~~~~l~~~a~LL-gv~~~~L~~aL~~r~~~t~~g~~~ 399 (784)
T 2v26_A 322 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAG-STSGGCNLKNKSTQALEYCAELL-GLDQDDLRVSLTTRVMLTTAGGAK 399 (784)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCEEECT-TTTSSEEECGGGHHHHHHHHHHH-TCCHHHHHHHHHEEEC--------
T ss_pred HcCCCHHHHHHHHHHHHHHHhcccceeeecc-CCCCccccccCCHHHHHHHHHHh-CCCHHHHHHHHhhcEEeccccCCC
Confidence 5999999999999999999999999998742 123456663 2467899999999 99999999999999998 67
Q ss_pred CcEEEecCCccCC
Q psy9984 132 QESFNKPMSVFEM 144 (144)
Q Consensus 132 ge~i~~~ls~~q~ 144 (144)
||.+++|++++|+
T Consensus 400 ge~i~~~l~~~qA 412 (784)
T 2v26_A 400 GTVIKVPLKVEQA 412 (784)
T ss_dssp ---CEEECCHHHH
T ss_pred CCeEeecCCHHHH
Confidence 9999999999874
No 11
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.84 E-value=3e-23 Score=183.98 Aligned_cols=85 Identities=25% Similarity=0.506 Sum_probs=62.7
Q ss_pred ccccchhhHHHHHHHHHHHhcccCeeeecCCCCCCCcceec-CChhHHHHHHHHhcCCCHHHHHHHHhhceee-----eC
Q psy9984 58 SCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIA-PSSGSLAAFCDILYNIDRDEFRRCLTHRKIT-----TM 131 (144)
Q Consensus 58 ~~g~~~~~~~~i~~ila~ILhlGni~F~~~~~~~~~~~~v~-~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~-----~~ 131 (144)
.+||+++++..||+++|||||||||+|.+... .++.+.+. .+.+.++.+|+|| ||++++|.++||+|++. ++
T Consensus 326 ~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~-~~~~~~~~~~~~~~l~~~a~LL-gv~~~~L~~aLt~r~~~~~~~~~~ 403 (1052)
T 4anj_A 326 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGS-TSGGCNLKNKSTQALEYCAELL-GLDQDDLRVSLTTRVMLTTAGGAK 403 (1052)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHTCCEEC--------CEECGGGHHHHHHHHHHT-TCCHHHHHHHHHEEC---------
T ss_pred HcCCCHHHHHHHHHHHHHHHhhcceeEEecCC-CCCCcccccCChHHHHHHHHHh-CCCHHHHHHHHhhceeeecccccC
Confidence 58999999999999999999999999987542 22334442 3457899999999 99999999999999875 57
Q ss_pred CcEEEecCCccCC
Q psy9984 132 QESFNKPMSVFEM 144 (144)
Q Consensus 132 ge~i~~~ls~~q~ 144 (144)
||.+.+|++++|+
T Consensus 404 ~e~i~~~l~~~qA 416 (1052)
T 4anj_A 404 GTVIKVPLKVEQA 416 (1052)
T ss_dssp ----CEECCHHHH
T ss_pred ceEEEecCCHHHH
Confidence 8999999999874
No 12
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=98.96 E-value=2.2e-09 Score=92.35 Aligned_cols=114 Identities=23% Similarity=0.239 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCC--CCCCcccccchhhHHHHHHHHHHHhcccCeeee
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGS--HGDTDSCSFSALDQEVIFRILSSILHLGNIQFS 85 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~--~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~ 85 (144)
|+.++|.++++||.++||+.+|+..||+++|+||||||++|.... ....+...+.+.+ .+..+|.+|-+..-++.
T Consensus 241 dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~---~l~~~a~LLgv~~~~L~ 317 (697)
T 1lkx_A 241 DDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTK---SLAAAASCLKTDQQSLS 317 (697)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHH---HHHHHHHHHTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHH---HHHHHHHhhCCCHHHHH
Confidence 678999999999999999999999999999999999999998721 1111233333322 45666666665443332
Q ss_pred cC----C-CCC----CCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 86 GG----S-HGD----TDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 86 ~~----~-~~~----~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
.. . ..+ .+.....-+ ....+.+|+-| ++.|..||+.|..
T Consensus 318 ~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~l----Y~rLF~wlV~~IN 369 (697)
T 1lkx_A 318 IALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKAL----YERLFNWLVSKIN 369 (697)
T ss_dssp HHHHBCC----------CCCCBCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 11 0 001 121111111 24568899999 9999999987764
No 13
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=98.91 E-value=2e-09 Score=96.04 Aligned_cols=115 Identities=13% Similarity=0.182 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCC-CCcccccchhhHHHHHHHHHHHhcccCeeeec
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHG-DTDSCSFSALDQEVIFRILSSILHLGNIQFSG 86 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~-~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~ 86 (144)
|+..+|.++++||.++||+.+|+..||++||+|||||||+|...... ....+..... ..+..+|.+|.+..-++..
T Consensus 312 dD~~~f~~~~~Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~ 388 (1052)
T 4anj_A 312 DDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKST---QALEYCAELLGLDQDDLRV 388 (1052)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGH---HHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCCh---HHHHHHHHHhCCCHHHHHH
Confidence 57899999999999999999999999999999999999999764332 1112222222 2455666666654333211
Q ss_pred C----------CCCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 87 G----------SHGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 87 ~----------~~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
. ....++.....-+ ....+.+|+-| ++.|..||+.|...
T Consensus 389 aLt~r~~~~~~~~~~~e~i~~~l~~~qA~~~rDaLAK~L----Y~rLF~wiV~~IN~ 441 (1052)
T 4anj_A 389 SLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTV----YSHLFDHVVNRVNQ 441 (1052)
T ss_dssp HHHEEC-------------CEECCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred HHhhceeeecccccCceEEEecCCHHHHHHHHHHHHHHH----HHHHHHHHHHhhhc
Confidence 0 0001222222112 24578899999 99999999987643
No 14
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=98.90 E-value=2.1e-09 Score=93.34 Aligned_cols=113 Identities=10% Similarity=0.211 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+.++|..+++||.++||+.+|+..||+++|+||||||++|........ ..+...+ .+..+|.+|-+..-++...
T Consensus 324 dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~--~~~~~~~---~l~~~a~LLgv~~~~L~~a 398 (783)
T 4db1_A 324 DDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQ--AEPDGTE---EADKSAYLMGLNSADLLKG 398 (783)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSC--EEESCCH---HHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcc--cccCChH---HHHHHHHHhCCCHHHHHHh
Confidence 6789999999999999999999999999999999999999987543211 1111111 2344455544433222110
Q ss_pred ----C-CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 88 ----S-HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 88 ----~-~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
. .-+.+......+ ....+.+|+-| ++.|..||+.|...
T Consensus 399 L~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~l----Y~rLF~wlV~~IN~ 445 (783)
T 4db1_A 399 LCHPRVKVGNEYVTKGQNVQQVIYATGALAKAV----YERMFNWMVTRINA 445 (783)
T ss_dssp HHSCC------CCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 0 001111111011 24578899999 99999999987643
No 15
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=98.87 E-value=5e-09 Score=91.16 Aligned_cols=116 Identities=14% Similarity=0.240 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+.++|.++++||.++||+.+|+..||+++|+||||||++|....+. .....+.... ...+..+|.+|-+..-++...
T Consensus 308 dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~-~~~~~v~~~~-~~~l~~~a~LLgv~~~~L~~a 385 (784)
T 2v26_A 308 DDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGST-SGGCNLKNKS-TQALEYCAELLGLDQDDLRVS 385 (784)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTT-TSSEEECGGG-HHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccceeeeccCC-CCccccccCC-HHHHHHHHHHhCCCHHHHHHH
Confidence 67899999999999999999999999999999999999999874221 1112222111 224566666666543333110
Q ss_pred ------CC----CCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 88 ------SH----GDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 88 ------~~----~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
.. ..++.....-+ ....+.+|+-| ++.|..||+.|...
T Consensus 386 L~~r~~~t~~g~~~ge~i~~~l~~~qA~~~rdalaK~l----Y~rLF~wlV~~IN~ 437 (784)
T 2v26_A 386 LTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKTV----YSHLFDHVVNRVNQ 437 (784)
T ss_dssp HHEEEC-----------CEEECCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred HhhcEEeccccCCCCCeEeecCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 00 01122222112 24578899999 99999999987644
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=98.87 E-value=8.5e-09 Score=90.22 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+.++|.++++||.++||+.+|+..||+++|+||||||++|....+.. ...+...+ .+..+|.+|.+..-++...
T Consensus 323 dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~--~~~~~~~~---~l~~~a~LLgv~~~~L~~a 397 (837)
T 1kk8_A 323 DDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREE--QAESDGTA---EAEKVAFLCGINAGDLLKA 397 (837)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----C--CCEESCSH---HHHHHHHHHTSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCC--ccccCCHH---HHHHHHHHHCCCHHHHHHH
Confidence 678999999999999999999999999999999999999998754211 11222222 3455566665543333211
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ..+.+......+ ....+.+|+-| ++.|..||+.|..
T Consensus 398 L~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~l----Y~rLF~wlV~~IN 443 (837)
T 1kk8_A 398 LLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSL----YDRMFNWLVRRVN 443 (837)
T ss_dssp HHSCEEC----CEECCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 001121111111 24578899999 9999999987764
No 17
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=98.85 E-value=4.1e-09 Score=91.76 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCccccc-chhhHHHHHHHHHHHhcccCeeeec
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSF-SALDQEVIFRILSSILHLGNIQFSG 86 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~-~~~~~~~i~~ila~ILhlGni~F~~ 86 (144)
|+.++|.++++||.++||+.+|+..||+++|+||||||++|...++. ...+ ... ..+..+|.+|-+..-++..
T Consensus 300 dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~~---~~~v~~~~---~~l~~~a~LLgv~~~~L~~ 373 (795)
T 1w7j_A 300 DDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSD---SCAIPPKH---DPLTIFCDLMGVDYEEMAH 373 (795)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETT---EEECCTTC---HHHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCCc---ceeecCCh---HHHHHHHHHhCCCHHHHHH
Confidence 67899999999999999999999999999999999999999764321 1112 111 2456666666664433321
Q ss_pred CC-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 87 GS-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 87 ~~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
.- ..+.+.....-+ ....+.+|+-| ++.|..||+.|..
T Consensus 374 aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~l----Y~rLF~wlV~~IN 420 (795)
T 1w7j_A 374 WLCHRKLATATETYIKPISKLHAINARDALAKHI----YANLFNWIVDHVN 420 (795)
T ss_dssp HHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcccEEEeCCceecCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 10 001222222112 24578899999 9999999987764
No 18
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=98.84 E-value=4.8e-09 Score=90.95 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+.++|.++++||.++||+.+|+..||+++|+||||||++|.. +.. +...+...+ .+..+|.+|.+..-++...
T Consensus 319 dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~~-~~~--~~~~~~~~~---~l~~~a~LLgv~~~~L~~a 392 (770)
T 1w9i_A 319 SDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEK-GAG--EGAVLKDKT---ALNAASTVFGVNPSVLEKA 392 (770)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCEE-CSS--SSEECSCCH---HHHHHHHHHTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEec-CCC--CccccCChH---HHHHHHHHhCCCHHHHHHH
Confidence 6789999999999999999999999999999999999999983 211 112222222 3445555555433222110
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ..+.+......+ ....+.+|+-| ++.|..||+.|..
T Consensus 393 L~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~l----Y~rLF~wlV~~IN 438 (770)
T 1w9i_A 393 LMEPRILAGRDLVAQHLNVEKSSSSRDALVKAL----YGRLFLWLVKKIN 438 (770)
T ss_dssp HHSCEEEETTEEEECCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 001111111111 24578899999 9999999987763
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.83 E-value=1.2e-08 Score=92.23 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=75.8
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+..+|..++.||.++||+.+++..||+++|+|||||||.|....+.. ...+...+ .+..+|.+|.+..-.+...
T Consensus 326 ~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~--~~~~~~~~---~~~~~a~lLg~~~~~l~~~ 400 (1184)
T 1i84_S 326 QDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTD--QASMPDNT---AAQKVCHLMGINVTDFTRS 400 (1184)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTS--CCBCCCSH---HHHHHHHHTTSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCc--CcccCChH---HHHHHHHHHCCCHHHHHHH
Confidence 678999999999999999999999999999999999999998643221 12222222 4555666666544333211
Q ss_pred ----C-CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 88 ----S-HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 88 ----~-~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
. ..+.+......+ ....+.+|+-| ++.|..||+.|...
T Consensus 401 l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~l----Y~~lF~wlv~~iN~ 447 (1184)
T 1i84_S 401 ILTPRIKVGRDVVQKAQTKEQADFAIEALAKAK----FERLFRWILTRVNK 447 (1184)
T ss_dssp HHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHTT
T ss_pred hcCcEEEeCCceEecCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 0 001121111111 24678899999 99999999987643
No 20
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=98.83 E-value=9.4e-09 Score=91.54 Aligned_cols=111 Identities=22% Similarity=0.278 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+..+|.+++.||.++||+.+|+..||+++|+||||||++|....+ +...+...+ .+..+|.+|-+..-++...
T Consensus 319 dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~---~~~~~~~~~---~l~~~a~LLgv~~~~L~~~ 392 (1010)
T 1g8x_A 319 SDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG---EGAVLKDKT---ALNAASTVFGVNPSVLEKA 392 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT---SSCBCSCCH---HHHHHHHHHTSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC---CccccCChH---HHHHHHHHHCCCHHHHHHH
Confidence 6789999999999999999999999999999999999999986543 112222222 3455555555543222110
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ..+.+......+ ....+.+|+-| ++.|..||+.|..
T Consensus 393 l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~l----Y~~LF~wlV~~IN 438 (1010)
T 1g8x_A 393 LMEPRILAGRDLVAQHLNVEKSSSSRDALVKAL----YGRLFLWLVKKIN 438 (1010)
T ss_dssp HHSCEEESSSSEEECCCCSHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 001121111111 24578899999 9999999987753
No 21
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=98.81 E-value=1.2e-08 Score=90.77 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCcccccchhhHHHHHHHHHHHhcccCeeeecC
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQFSGG 87 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~~~~~~~~i~~ila~ILhlGni~F~~~ 87 (144)
|+..+|.+++.||.++||+.+|+..||+++|+||||||+.|......+ ...+...+ .+..+|.+|-+..-++...
T Consensus 295 dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~--~~~~~~~~---~l~~~a~LLgv~~~~L~~~ 369 (995)
T 2ycu_A 295 QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTD--QATMPDNT---AAQKLCRLLGLGVTDFSRA 369 (995)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSC--CEECSCCH---HHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCc--ccccCChH---HHHHHHHHHCCCHHHHHHH
Confidence 789999999999999999999999999999999999999998754221 11222222 3455555555543222110
Q ss_pred C-----CCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 88 S-----HGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 88 ~-----~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
- ..+.+......+ ....+.+|+-| ++.|..||+.|..
T Consensus 370 l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~l----Y~~LF~wlV~~iN 415 (995)
T 2ycu_A 370 LLTPRIKVGRDYVQKAQTKEQADFALEALAKAT----YERLFRWLVLRLN 415 (995)
T ss_dssp HHSCEEESSSSEEECCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hcCcEEEcCCceecCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 001121111111 24578899999 9999999987763
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.79 E-value=1.3e-08 Score=91.12 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=74.6
Q ss_pred ccHHHHHHHHHHHHHcCCChhcHHHHHHHHHHHhhcCCeeeecCCCCCCccccc-chhhHHHHHHHHHHHhcccCeeeec
Q psy9984 8 NLQVRFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSF-SALDQEVIFRILSSILHLGNIQFSG 86 (144)
Q Consensus 8 ~n~~~f~~~~~a~~i~G~~~~e~~~if~~la~iL~lGni~f~~~~~~~~~~~g~-~~~~~~~i~~ila~ILhlGni~F~~ 86 (144)
|+..+|.+++.||.++||+.+++..||+++|+||||||+.|...++. ...+ ... ..+..+|.+|-+..-.+..
T Consensus 300 dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~---~~~~~~~~---~~l~~~a~LLgv~~~~L~~ 373 (1080)
T 2dfs_A 300 DDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSD---SCAIPPKH---DPLTIFCDLMGVDYEEMAH 373 (1080)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTT---EEECCSSC---HHHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCc---ceeecCCh---HHHHHHHHHhCCCHHHHHH
Confidence 67899999999999999999999999999999999999999764331 1111 111 2456666666654433321
Q ss_pred C-----CCCCCCcceecCC----hhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 87 G-----SHGDTDSCSIAPS----SGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 87 ~-----~~~~~~~~~v~~~----~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
. -..+.+.....-+ ....+.+|+-| ++.|..||+.|..
T Consensus 374 ~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~l----Y~~LF~wlV~~iN 420 (1080)
T 2dfs_A 374 WLCHRKLATATETYIKPISKLHAINARDALAKHI----YANLFNWIVDHVN 420 (1080)
T ss_dssp HHHEEEECC----EEEECCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 1 0001222222112 24678899999 9999999987764
No 23
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.28 E-value=7.8 Score=23.44 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=25.6
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
++.+.+..+|+-+ |++.+.+..|.+.|+
T Consensus 30 Ps~eei~~LA~~l-gL~~~VVrVWFqNrR 57 (71)
T 2da7_A 30 PNSDELLKISIAV-GLPQEFVKEWFEQRK 57 (71)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CCCHHHHHHHHhhcc
Confidence 5678899999999 999999999999876
No 24
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=40.55 E-value=11 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhh
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTH 125 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~ 125 (144)
++.+.+..+|+.| ||+++.|..+|..
T Consensus 52 ~~~~~~~~ia~~l-~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 52 LNAYNAALLAKIL-KVSVEEFSPSIAR 77 (80)
T ss_dssp CCHHHHHHHHHHH-TSCGGGTCHHHHH
T ss_pred CCHHHHHHHHHHh-CCCHHHHhHHHHh
Confidence 4567899999999 9999988777653
No 25
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=40.15 E-value=35 Score=19.74 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhh
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTH 125 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~ 125 (144)
++.+.+..+|+.| |++++.|...+-.
T Consensus 54 ~~~~~l~~l~~~l-~~~~~~l~~~~~~ 79 (83)
T 3f6w_A 54 LDVIEFMDFCRGI-GTDPYALLSKLEA 79 (83)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHh
Confidence 4667899999999 9999999876643
No 26
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=39.08 E-value=26 Score=21.47 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHh
Q psy9984 103 SLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 103 ~l~~~a~LL~gv~~~~L~~aLt 124 (144)
.++.+|++| ++++++..+.|.
T Consensus 32 sl~~La~ll-~ls~~~vE~~ls 52 (84)
T 1ufm_A 32 TFEELGALL-EIPAAKAEKIAS 52 (84)
T ss_dssp EHHHHHHHT-TSCHHHHHHHHH
T ss_pred eHHHHHHHH-CcCHHHHHHHHH
Confidence 388999999 999988777654
No 27
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=36.16 E-value=29 Score=20.60 Aligned_cols=24 Identities=8% Similarity=0.043 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
...+|+.| ||++..+.+|+..+.+
T Consensus 13 ~~~lA~~l-GVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGV-GVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHH-TSCHHHHHHHHHHTSC
T ss_pred HHHHHHHH-CCCHHHHHHHHhCCCC
Confidence 56899999 9999999999875443
No 28
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=34.58 E-value=44 Score=19.70 Aligned_cols=30 Identities=10% Similarity=0.413 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
++......+|..+ |++..++..|+..|...
T Consensus 29 Ps~~er~eLA~~t-gLt~~qVkvWFqNRR~k 58 (66)
T 3nau_A 29 PDDAEVYRLIEVT-GLARSEIKKWFSDHRYR 58 (66)
T ss_dssp CCHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CcCHHHhhHhcccchhh
Confidence 5678889999999 99999999999887643
No 29
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=34.56 E-value=37 Score=18.49 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.0
Q ss_pred CChhHHHHHHHHhcCCCHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~ 121 (144)
++.+.+..+|+.| |++++.|..
T Consensus 45 ~~~~~l~~i~~~l-~~~~~~l~~ 66 (68)
T 2r1j_L 45 PNGENLLALSKAL-QCSPDYLLK 66 (68)
T ss_dssp CBHHHHHHHHHHT-TSCHHHHHH
T ss_pred CCHHHHHHHHHHh-CCCHHHHhc
Confidence 3567789999999 999998753
No 30
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=33.59 E-value=38 Score=18.31 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
++.+.+..+|+.| |++++.|.
T Consensus 41 ~~~~~l~~i~~~l-~~~~~~l~ 61 (66)
T 2xi8_A 41 PSLQLALKIAYYL-NTPLEDIF 61 (66)
T ss_dssp CCHHHHHHHHHHT-TSCHHHHE
T ss_pred CCHHHHHHHHHHH-CcCHHHHh
Confidence 4567799999999 99998763
No 31
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=33.16 E-value=40 Score=19.07 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=17.9
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
++...+..+|+.| |++++.|.
T Consensus 48 ~~~~~l~~ia~~l-~~~~~~l~ 68 (78)
T 3b7h_A 48 PTITTIRKVCGTL-GISVHDFF 68 (78)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHT
T ss_pred CCHHHHHHHHHHc-CCCHHHHh
Confidence 4667799999999 99999875
No 32
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=32.87 E-value=42 Score=19.49 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHhcCCCHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~ 121 (144)
++.+.+..+|+.| ||+.+.|..
T Consensus 51 p~~~~l~~ia~~l-~v~~~~l~~ 72 (78)
T 3qq6_A 51 PSIQFLEKVSAVL-DVSVHTLLD 72 (78)
T ss_dssp CBHHHHHHHHHHH-TCCHHHHHH
T ss_pred CCHHHHHHHHHHH-CcCHHHHhC
Confidence 4667899999999 999998864
No 33
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.56 E-value=49 Score=18.47 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHhcCCCHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~ 121 (144)
++.+.+..+|+.| |++++.|..
T Consensus 45 ~~~~~l~~ia~~l-~~~~~~l~~ 66 (76)
T 1adr_A 45 PNGENLLALSKAL-QCSPDYLLK 66 (76)
T ss_dssp CCHHHHHHHHHHT-TSCHHHHHH
T ss_pred CCHHHHHHHHHHH-CcCHHHHhc
Confidence 4567799999999 999998764
No 34
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.60 E-value=50 Score=18.54 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=18.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~ 121 (144)
++...+..+|+.| |++++.|..
T Consensus 50 ~~~~~l~~la~~l-~~~~~~l~~ 71 (77)
T 2b5a_A 50 ISLINIHKICAAL-DIPASTFFR 71 (77)
T ss_dssp CBHHHHHHHHHHT-TCCHHHHHH
T ss_pred CCHHHHHHHHHHh-CcCHHHHhc
Confidence 4567799999999 999998865
No 35
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.98 E-value=54 Score=18.40 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHhh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTH 125 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~ 125 (144)
...+|++| |++...|.+.|-.
T Consensus 35 ~~~aA~~L-Gisr~tL~rklkk 55 (63)
T 3e7l_A 35 LKRTAEEI-GIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHH
T ss_pred HHHHHHHH-CcCHHHHHHHHHH
Confidence 55899999 9999988877643
No 36
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=28.93 E-value=48 Score=18.86 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHhhc
Q psy9984 104 LAAFCDILYNIDRDEFRRCLTHR 126 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt~r 126 (144)
...+|++| ||+..-|.++.-..
T Consensus 5 ~~e~a~~L-gvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIF-GASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHT-TCCHHHHHHHTTTT
T ss_pred HHHHHHHH-CcCHHHHHHHHHCC
Confidence 45799999 99999999887653
No 37
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=27.58 E-value=56 Score=18.77 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=19.2
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRC 122 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~a 122 (144)
++...+..+|+.| ||+++.|...
T Consensus 51 ~~~~~l~~ia~~l-~v~~~~l~~~ 73 (82)
T 3s8q_A 51 LTIKSLELIMKGL-EVSDVVFFEM 73 (82)
T ss_dssp CBHHHHHHHHHHT-TCCHHHHHHH
T ss_pred CCHHHHHHHHHHH-CcCHHHHhcC
Confidence 4567899999999 9999988653
No 38
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=26.49 E-value=30 Score=19.59 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
++.+.+..+|+.| ||+++.|.
T Consensus 48 ~~~~~l~~ia~~l-~v~~~~l~ 68 (73)
T 3omt_A 48 PSLETLFDIAEAL-NVDVRELI 68 (73)
T ss_dssp CCHHHHHHHHHHH-TSCGGGGB
T ss_pred CCHHHHHHHHHHH-CcCHHHHh
Confidence 4678899999999 99988763
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=26.34 E-value=82 Score=17.31 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
++......+|..| |++......|...|.
T Consensus 30 p~~~~r~~La~~~-~l~~~qV~~WFqNrR 57 (61)
T 1akh_A 30 LNSKEKEEVAKKC-GITPLQVRVWFINKR 57 (61)
T ss_dssp CCHHHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4667788899999 999999999988764
No 40
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=25.84 E-value=52 Score=19.64 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHhcCCCHHHHHHHHh
Q psy9984 100 SSGSLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 100 ~~~~l~~~a~LL~gv~~~~L~~aLt 124 (144)
....|+.+|..- |+|++.|.+.|-
T Consensus 37 ~~~tLeeA~~~h-giD~d~ll~eLn 60 (76)
T 2k53_A 37 MGESIEDACAVH-GIDADKLVKELN 60 (76)
T ss_dssp CCSBHHHHHHHH-TCCHHHHHHHHH
T ss_pred ccccHHHHHHHc-CCCHHHHHHHHH
Confidence 346699999999 999999988774
No 41
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=25.57 E-value=58 Score=18.89 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.3
Q ss_pred CChhHHHHHHHHhcCCCHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~ 121 (144)
++...+..+|+.| ||+.+.|..
T Consensus 55 p~~~~l~~ia~~l-~v~~~~l~~ 76 (86)
T 2ofy_A 55 PAFFTIAAVARVL-DLSLDDVAA 76 (86)
T ss_dssp CBHHHHHHHHHHT-TCCHHHHHT
T ss_pred CCHHHHHHHHHHh-CCCHHHHhc
Confidence 4567799999999 999998864
No 42
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=24.80 E-value=52 Score=18.44 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
...+|++| |++...|-+.|-
T Consensus 36 ~~~aA~~L-GIsr~tL~rklk 55 (61)
T 1g2h_A 36 TRKLAQRL-GVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHHT-TSCTHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 34789999 999998877653
No 43
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=24.69 E-value=94 Score=17.00 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
++......+|..+ |++...+..|...|..
T Consensus 26 p~~~~r~~La~~~-gl~~~qV~~WFqNrR~ 54 (60)
T 1k61_A 26 LDTKGLENLMKNT-SLSRIQIKNWVSNRRR 54 (60)
T ss_dssp CCHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-CcCHHHHHHHHHHHHc
Confidence 4667788899999 9999999999887653
No 44
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.70 E-value=69 Score=19.63 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRC 122 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~a 122 (144)
++...+..+|+.| ||+++.|...
T Consensus 68 ps~~~l~~ia~~l-~v~~~~l~~~ 90 (99)
T 3g5g_A 68 LTIKSLELIMKGL-EVSDVVFFEM 90 (99)
T ss_dssp CBHHHHHHHHHHT-TCCHHHHHHH
T ss_pred CCHHHHHHHHHHH-CcCHHHHhcc
Confidence 4667899999999 9999998754
No 45
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=23.61 E-value=76 Score=17.68 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=25.2
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceee
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKIT 129 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~ 129 (144)
++......+|..+ |++...+..|...|...
T Consensus 31 p~~~~r~~La~~~-~L~~~qV~~WFqNrR~r 60 (64)
T 1du6_A 31 PSEEAKEELAKKC-GITVSQVSNWFGNKRIR 60 (64)
T ss_dssp CCHHHHHHHHHHH-TSCHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 5667788899999 99999999999877643
No 46
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=23.50 E-value=46 Score=22.52 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHh
Q psy9984 101 SGSLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 101 ~~~l~~~a~LL~gv~~~~L~~aLt 124 (144)
.+.++.+|+.+ ||+++.|.+.+-
T Consensus 95 adTleeLA~~~-gid~~~L~~TV~ 117 (160)
T 2lfc_A 95 KGSLESAAEQA-GIVVDELVQTVK 117 (160)
T ss_dssp CSSHHHHHHHH-TCCHHHHHHHHH
T ss_pred cCCHHHHHHHh-CCCHHHHHHHHH
Confidence 34588999999 999999988764
No 47
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=23.35 E-value=76 Score=17.32 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
+..+|..+ ||++..|.+|+-
T Consensus 28 ~~~vA~~~-gIs~~tl~~W~~ 47 (59)
T 2glo_A 28 QRATARKY-NIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHT-TSCHHHHHHHHT
T ss_pred HHHHHHHH-CcCHHHHHHHHH
Confidence 67899999 999999999863
No 48
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=23.29 E-value=75 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHhcCCCHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~ 121 (144)
++.+.+..+|+.| ||+++.|..
T Consensus 49 p~~~~l~~la~~l-~v~~~~l~~ 70 (114)
T 3op9_A 49 PDIEKLIRLATYF-HLSIDELVG 70 (114)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHT
T ss_pred CCHHHHHHHHHHh-CCCHHHHhc
Confidence 4677899999999 999998854
No 49
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=22.88 E-value=39 Score=18.76 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.4
Q ss_pred CChhHHHHHHHHhcCCCHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEF 119 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L 119 (144)
++.+.+..+|+.| ||+++.|
T Consensus 50 ~~~~~l~~la~~l-~v~~~~l 69 (71)
T 2ewt_A 50 VTVQRLAELADFY-GVPVQEL 69 (71)
T ss_dssp CCHHHHHHHHHHH-TSCGGGG
T ss_pred CCHHHHHHHHHHH-CcCHHHH
Confidence 4567789999999 9998765
No 50
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=22.85 E-value=76 Score=19.23 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
...+|++| |++...|.+.|-
T Consensus 57 ~s~AA~~L-GISR~TLyrKLk 76 (81)
T 1umq_A 57 VSETARRL-NMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 45889999 999998877663
No 51
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=22.82 E-value=1e+02 Score=16.69 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
++......+|..| |+++.....|...|.
T Consensus 25 p~~~~r~~La~~l-~l~~~qV~~WFqNrR 52 (58)
T 1ig7_A 25 LSIAERAEFSSSL-SLTETQVKIWFQNRR 52 (58)
T ss_dssp CCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-CcCHHHhhhhhhHhh
Confidence 4566788899999 999999999987764
No 52
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.75 E-value=37 Score=20.73 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHhcCCCHHHHH
Q psy9984 100 SSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 100 ~~~~l~~~a~LL~gv~~~~L~ 120 (144)
+.+.+..+|+.| ||++++|.
T Consensus 64 s~~~l~kIa~~L-~v~~~~L~ 83 (88)
T 3t76_A 64 SLTVLLAICEYL-NCDFGDII 83 (88)
T ss_dssp CHHHHHHHHHHH-TCCGGGTC
T ss_pred CHHHHHHHHHHH-CcCHHHHh
Confidence 667899999999 99998774
No 53
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=22.25 E-value=1e+02 Score=16.52 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=23.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhce
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRK 127 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~ 127 (144)
++......+|..| |+++.....|...|.
T Consensus 27 p~~~~r~~La~~l-~l~~~qV~~WFqNrR 54 (58)
T 3rkq_A 27 LSAPERDQLASVL-KLTSTQVKIWFQNRR 54 (58)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CcCHHHHHHhhHHhh
Confidence 4566788899999 999999999988764
No 54
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.24 E-value=83 Score=15.50 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q psy9984 104 LAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~aLt 124 (144)
...+|+.| ||+...+.+++-
T Consensus 24 ~~~IA~~l-gis~~Tv~~~~~ 43 (51)
T 1tc3_C 24 LHEMSRKI-SRSRHCIRVYLK 43 (51)
T ss_dssp HHHHHHHH-TCCHHHHHHHHH
T ss_pred HHHHHHHH-CcCHHHHHHHHh
Confidence 56789999 999998888774
No 55
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=21.63 E-value=42 Score=18.84 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHhcCCCHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFR 120 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~ 120 (144)
++.+.+..+|+.| |++++.|.
T Consensus 50 ~~~~~l~~ia~~l-~~~~~~l~ 70 (76)
T 3bs3_A 50 PSLDMLVKVAELL-NVDPRQLI 70 (76)
T ss_dssp CCHHHHHHHHHHH-TSCGGGGB
T ss_pred CCHHHHHHHHHHH-CcCHHHHh
Confidence 4667799999999 99988663
No 56
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=21.35 E-value=1.1e+02 Score=17.05 Aligned_cols=33 Identities=6% Similarity=0.184 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceeeeCC
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKITTMQ 132 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~g 132 (144)
++......+|..| |++......|...|...-+.
T Consensus 28 p~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~kk 60 (66)
T 1bw5_A 28 PDALMKEQLVEMT-GLSPRVIRVWFQNKRCKDKK 60 (66)
T ss_dssp CCHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHH-CcCHHHHHHHhHHHHHHHhH
Confidence 4566778899999 99999999999888765543
No 57
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=21.02 E-value=85 Score=19.92 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=18.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHh
Q psy9984 102 GSLAAFCDILYNIDRDEFRRCLT 124 (144)
Q Consensus 102 ~~l~~~a~LL~gv~~~~L~~aLt 124 (144)
..+..+|+.| ||+++.|....-
T Consensus 56 ~~l~~iA~~L-gv~~~~L~~~~~ 77 (112)
T 2wus_R 56 SYIKRYSEFL-ELSPDEMLKLYE 77 (112)
T ss_dssp HHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCHHHHHHHHH
Confidence 4678999999 999999877654
No 58
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=20.85 E-value=1.2e+02 Score=16.99 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=25.7
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceeee
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKITT 130 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~ 130 (144)
++......+|..| |+++.....|...|...-
T Consensus 26 p~~~~r~~La~~l-~l~~~qV~~WFqNrR~k~ 56 (67)
T 2k40_A 26 PGIDILEDLAQKL-NLELDRIQIWFQNRRAKL 56 (67)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-CcCHHHhhHhhHhHHHHH
Confidence 4667788999999 999999999998776443
No 59
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=20.75 E-value=1.1e+02 Score=18.20 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=26.4
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKITTM 131 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ 131 (144)
++......+|.-| |+++..+.-|+..|..+.+
T Consensus 46 p~~~~r~~La~~l-gL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 46 HDDVAVEQFCAET-GVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp STTHHHHHHHHHS-CCCHHHHHHHHHTTSCCSC
T ss_pred CCHHHHHHHHHHh-CcCcCcccccccccccCCC
Confidence 4556678899999 9999999999998876554
No 60
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=20.47 E-value=1.2e+02 Score=16.45 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhcee
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKI 128 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~ 128 (144)
++......+|..| |+++.....|...|..
T Consensus 22 p~~~~r~~LA~~l-~l~~~qV~~WFqNRR~ 50 (56)
T 3a03_A 22 LASAERAALAKAL-RMTDAQVKTWFQNRRT 50 (56)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHh-CcCHHHhhHhhHHhhh
Confidence 4566778899999 9999999999887754
No 61
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.35 E-value=80 Score=18.26 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=26.5
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKITTM 131 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ 131 (144)
++......+|+-| |++......|+..|..+-+
T Consensus 26 p~~~~r~~LA~~l-~LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 26 PDEKRLEGLSKQL-DWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp CCHHHHHHHHHHH-CSCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHh-CCCHHHHHHHHHHHHhccC
Confidence 3456678899999 9999999999999876544
No 62
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.28 E-value=1.2e+02 Score=17.23 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhhceeeeC
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTHRKITTM 131 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~r~~~~~ 131 (144)
++......+|..| |++......|+..|....+
T Consensus 32 p~~~~r~~LA~~l-~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da2_A 32 PKDDEFEQLSNLL-NLPTRVIVVWFQNARQKAR 63 (70)
T ss_dssp CCHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHh-CCCHHHhHHhhHhhhHHHh
Confidence 4566788899999 9999999999988765443
No 63
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.12 E-value=96 Score=16.73 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCHHHHHH
Q psy9984 104 LAAFCDILYNIDRDEFRR 121 (144)
Q Consensus 104 l~~~a~LL~gv~~~~L~~ 121 (144)
+..+|+.| |++++.|..
T Consensus 45 l~~la~~l-~~~~~~l~~ 61 (69)
T 1r69_A 45 LPELASAL-GVSVDWLLN 61 (69)
T ss_dssp HHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHH-CcCHHHHhC
Confidence 88999999 999998864
No 64
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=20.08 E-value=1.1e+02 Score=20.12 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHHHhh
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRCLTH 125 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~aLt~ 125 (144)
++...+..+|+.| |++++.|...+-.
T Consensus 108 ps~~~l~~la~~l-gv~~~~l~~~~~~ 133 (141)
T 3kxa_A 108 LQDKTVQKLANAL-GVSPLEVRAAFER 133 (141)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHHHHGG
T ss_pred CCHHHHHHHHHHH-CCCHHHHHHHhhh
Confidence 4667899999999 9999999887653
No 65
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=20.01 E-value=1e+02 Score=19.03 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.1
Q ss_pred CChhHHHHHHHHhcCCCHHHHHHH
Q psy9984 99 PSSGSLAAFCDILYNIDRDEFRRC 122 (144)
Q Consensus 99 ~~~~~l~~~a~LL~gv~~~~L~~a 122 (144)
++.+.+..+|+.| ||+++.|...
T Consensus 68 ~~~~~l~~la~~l-~v~~~~l~~~ 90 (117)
T 3f52_A 68 VSSELLASVCHAL-GASVADVLIE 90 (117)
T ss_dssp CCHHHHHHHHHHH-TCCHHHHHHH
T ss_pred CCHHHHHHHHHHh-CCCHHHHHhc
Confidence 4678899999999 9999887653
Done!