RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9984
(144 letters)
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 80.4 bits (199), Expect = 2e-18
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
S Q IF++L+++LHLGNI+ DS SI+P +L C++L +D + R
Sbjct: 251 ISEEQQMDIFKLLAALLHLGNIEI---EATRNDSSSISPKDENLQIACELL-GVDASDLR 306
Query: 121 RCLTHRKITTMQESFNKPMSVFE 143
+ L R+I T E KP++ +
Sbjct: 307 KWLVKRQIVTRSEKIVKPLTKEQ 329
Score = 46.9 bits (112), Expect = 7e-07
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+VRF Q IYTY G
Sbjct: 13 EPAVLHNLRVRFIQKQ-IYTYSG 34
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 73.7 bits (182), Expect = 4e-16
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS +QE IF+IL++ILHLGNI+F G + + S S AA L +D +E
Sbjct: 254 FSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELSNAAE---LLGVDPEELE 310
Query: 121 RCLTHRKITTMQESFNKPMSVFE 143
+ LT RKI T E KP++V +
Sbjct: 311 KALTKRKIKTGGEVITKPLNVEQ 333
Score = 38.3 bits (90), Expect = 5e-04
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+ R+ + IYTY G
Sbjct: 19 EPAVLHNLKKRY-LKDLIYTYIG 40
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 63.0 bits (154), Expect = 2e-12
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS +Q+ IFRI+++ILHLGN+QF+ G + S + F L +D E
Sbjct: 248 FSEDEQDEIFRIVAAILHLGNVQFAENGDG-----AAVISDKDVLDFAAYLLGVDPSELE 302
Query: 121 RCLTHRKITT----MQESFNKPMSV 141
+ LT R I T E ++ P++V
Sbjct: 303 KALTSRTIETGGGGRGEVYDVPLNV 327
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 61.9 bits (151), Expect = 5e-12
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS + E IFRIL++ILHLGNI+F ++ + + L+ ++L +D +E
Sbjct: 246 FSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTE-VLSKAAELL-GLDPEELE 303
Query: 121 RCLTHRKITTMQESFNKPMSV 141
LT++ E P++
Sbjct: 304 EALTYKVTKVGGEVITIPLTK 324
Score = 34.9 bits (81), Expect = 0.009
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E VL NL+ R+ + IYTY G
Sbjct: 13 EATVLNNLRQRYKKDL-IYTYAG 34
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 60.1 bits (146), Expect = 2e-11
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 62 SALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAA-FCDILYNIDRDEFR 120
S +Q+ IFR++++ILHLGNI+F+ G + DS + L D
Sbjct: 251 SEEEQDAIFRVVAAILHLGNIEFAKGE--EIDSSVLKDEKSEFHLKTAAELLMCDEKALE 308
Query: 121 RCLTHRKITTMQESFNKPMSVF 142
L R + T +E KP+
Sbjct: 309 DALCKRVMVTPEEVITKPLDPD 330
Score = 52.0 bits (125), Expect = 1e-08
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSIL 77
G S +Q+ IFR++++ILHLGNI+F+ G + DS E + + +L
Sbjct: 249 GISEEEQDAIFRVVAAILHLGNIEFAKGE--EIDSSVLKDEKSEFHLKTAAELL 300
Score = 33.1 bits (76), Expect = 0.033
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EP VL NL+ R+ + N IYTY G
Sbjct: 14 EPGVLQNLKTRY-ELNEIYTYTG 35
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 56.5 bits (137), Expect = 3e-10
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 61 FSALDQEVIFRILSSILHLGNIQF------SGGSHGDTDSCSIAPSSGSLAAFCDILYNI 114
F+ +Q IFR+L++ILHLGNI+F DT+ I L +
Sbjct: 248 FTDEEQRSIFRVLAAILHLGNIKFKQDQNEEQAVVEDTEELEIIAG----------LLGV 297
Query: 115 DRDEFRRCLTHRKITTMQESFNKPMSV 141
D +E + L R+I T +E+ KP +V
Sbjct: 298 DPEELEKALLKRRIKTGRETVTKPQNV 324
Score = 30.0 bits (68), Expect = 0.40
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +VL+NL+ R+ IYTY G
Sbjct: 12 ETSVLHNLKKRYTGDL-IYTYSG 33
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 55.1 bits (133), Expect = 1e-09
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 66 QEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTH 125
Q+ IF+IL++ILH+GNI+F D + +I + L C +L ID F + L
Sbjct: 320 QDQIFKILAAILHIGNIEFK----EDRNGAAIFSDNSVLDKACYLL-GIDPSLFVKWLVK 374
Query: 126 RKITTMQESFNKPMS 140
R+I T E P++
Sbjct: 375 RQIKTGGEWIVVPLN 389
Score = 32.4 bits (74), Expect = 0.070
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+ R+ IYTY G
Sbjct: 79 EPAVLHNLEKRYNNGQ-IYTYSG 100
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 47.6 bits (113), Expect = 4e-07
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS+ DQ+ IFRIL+SILHLGN+ F + S+ S+ + A ++L I + +
Sbjct: 246 FSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVV-SAREIQAVAELL-QISPEGLQ 303
Query: 121 RCLTHRKITTMQESFNKPMSV 141
+ +T + T +E P++V
Sbjct: 304 KAITFKVTETRREKIFTPLTV 324
Score = 42.6 bits (100), Expect = 2e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GFS+ DQ+ IFRIL+SILHLGN+ F
Sbjct: 245 GFSSEDQDSIFRILASILHLGNVYF 269
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 46.3 bits (110), Expect = 1e-06
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 65 DQEV--IFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRC 122
DQE+ IF++L++ILH+GN++F + +C + + +L +L + +
Sbjct: 247 DQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTP-NLQRVAQLL-GVPIQDLMDA 304
Query: 123 LTHRKITTMQESFNKPMSV 141
LT R I T E+ P+S
Sbjct: 305 LTSRTIFTRGETVVTPLSR 323
Score = 34.7 bits (80), Expect = 0.011
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 29 DQEV--IFRILSSILHLGNIQFSGGSHGDTDSC 59
DQE+ IF++L++ILH+GN++F + +C
Sbjct: 247 DQEIWEIFKLLAAILHIGNLRFEATEVDNLAAC 279
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 44.0 bits (104), Expect = 7e-06
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 65 DQEV--IFRILSSILHLGNIQFSGGSHGDTD-SCSIAPSSGSLAAFCDILYNIDRDEFRR 121
D E +FR+++ +LHLGNI F G T C++ S +C L +D+D+ R
Sbjct: 278 DTEKLDLFRVVAGVLHLGNIDFEEA--GSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRV 335
Query: 122 CLTHRKITT 130
LT R + T
Sbjct: 336 SLTTRVMLT 344
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 41.8 bits (99), Expect = 4e-05
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GFS ++ IF+I+++ILHLGNI+F
Sbjct: 259 GFSDEEKNSIFKIVAAILHLGNIKF 283
Score = 41.0 bits (97), Expect = 8e-05
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS ++ IF+I+++ILHLGNI+F + + + L ++ +
Sbjct: 260 FSDEEKNSIFKIVAAILHLGNIKFKQRQREEQ---AELDGTEEADKAAH-LLGVNSADLL 315
Query: 121 RCLTHRKI 128
+ L H +I
Sbjct: 316 KALLHPRI 323
Score = 35.3 bits (82), Expect = 0.007
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +VL+NL+ R+ + IYTY G
Sbjct: 18 EASVLHNLRERY-YSDLIYTYSG 39
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 40.0 bits (94), Expect = 2e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAF---CDILYN 113
DS S E IF ILS +L LGN++ G G + A S SL F C++L+
Sbjct: 339 DSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAA-AISDESLEVFNEACELLF- 396
Query: 114 IDRDEFRRCLTHRKITT 130
+D + ++ LT K+T
Sbjct: 397 LDYESLKKELTV-KVTY 412
Score = 36.5 bits (85), Expect = 0.003
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHL 79
G S E IF ILS +L LGN++ G G + + + +F +L L
Sbjct: 342 GLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFL 397
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 36.4 bits (84), Expect = 0.003
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQF--SGGSHGDTDSCSIAPSS--GSLAAFCDILY 112
+ F A Q+ IF +LS++L LGN+ + H D +S + L+ L
Sbjct: 252 EMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRD-ESLEVGNPEVVDLLSQ----LL 306
Query: 113 NIDRDEFRRCLTHRKITTMQESFNKPMSVFE 143
+ R+ LT ++ T+ E+ P S+ E
Sbjct: 307 KVKRETLMEALTKKRTVTVNETLILPYSLSE 337
Score = 34.1 bits (78), Expect = 0.016
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQF 48
GF A Q+ IF +LS++L LGN+ +
Sbjct: 255 GFLAATQKQIFAVLSAVLLLGNVTY 279
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 35.6 bits (82), Expect = 0.005
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 65 DQEV--IFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRC 122
D+EV ++RIL++IL+LG+I+F + S + +L L I DE +
Sbjct: 253 DEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALEN-AASLLCIRSDELQEA 311
Query: 123 LTHRKITTMQESFNKPMSV 141
LT + T E+ + +V
Sbjct: 312 LTSHCVVTRGETIVRHNTV 330
Score = 29.8 bits (67), Expect = 0.47
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 12 RFCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFS 49
+F Q + GF+ + ++RIL++IL+LG+I+F
Sbjct: 238 QFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFG 275
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 33.3 bits (76), Expect = 0.039
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFS 85
D S DQE +F +L+++L LGN+ F+
Sbjct: 246 DIVHISKEDQENVFAMLAAVLWLGNVSFT 274
Score = 32.1 bits (73), Expect = 0.074
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFS 49
S DQE +F +L+++L LGN+ F+
Sbjct: 249 HISKEDQENVFAMLAAVLWLGNVSFT 274
Score = 31.7 bits (72), Expect = 0.12
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EP+VLYNLQ R+ + IYT G
Sbjct: 21 EPSVLYNLQYRY-SQDLIYTKAG 42
>gnl|CDD|235224 PRK04140, PRK04140, hypothetical protein; Provisional.
Length = 317
Score = 27.1 bits (61), Expect = 3.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 92 TDSCSIAPSSGSLAA-------FCDILYNID 115
+D C I PS L A ILYNID
Sbjct: 21 SDRCPIRPSCFDLVARRGDLLLLLKILYNID 51
>gnl|CDD|182781 PRK10854, PRK10854, exopolyphosphatase; Provisional.
Length = 513
Score = 26.6 bits (59), Expect = 5.6
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 112 YNIDRDEFRRCLTHRKITTMQ 132
YNIDR++ RR L TTMQ
Sbjct: 326 YNIDREQARRVLE----TTMQ 342
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 26.6 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
Query: 31 EVIFRILSSILHLG------NIQFSGGSHG 54
EVI + LH G +FSGG HG
Sbjct: 94 EVIL----TKLHAGGKFSNKAYKFSGGLHG 119
Score = 26.6 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 10/30 (33%)
Query: 67 EVIFRILSSILHLG------NIQFSGGSHG 90
EVI + LH G +FSGG HG
Sbjct: 94 EVIL----TKLHAGGKFSNKAYKFSGGLHG 119
>gnl|CDD|220148 pfam09232, Caenor_Her-1, Caenorhabditis elegans Her-1. Her-1
adopts an all-helical structure with two subdomains:
residues 19-80 comprise a left-handed three-helix bundle
with an overhand connection between the second and third
helices, whilst residues 81-164 comprise a left-handed
anti-parallel four-helix bundle in which the first helix
consists of four consecutive turns of 3-10-helix.
Fourteen Cys are conserved in all known HER-1 sequences
and form seven disulfide bonds. The protein dictates
male development in Caenorhabditis elegans, probably by
playing a direct role in cell signaling during C.
elegans sex determination. It also inhibits the function
of tra-2a.
Length = 130
Score = 25.8 bits (56), Expect = 6.7
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 108 CDILYNIDRDEFRRCLTHRKITTMQ 132
CD+ + D DE RRC T T MQ
Sbjct: 57 CDVFGDDDNDEKRRCET-ECKTVMQ 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.419
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,085,845
Number of extensions: 616520
Number of successful extensions: 718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 49
Length of query: 144
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 56
Effective length of database: 7,034,450
Effective search space: 393929200
Effective search space used: 393929200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.4 bits)