RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9984
(144 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 83.2 bits (206), Expect = 1e-19
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
S Q IFRIL+ ILHLGN++F+ D+DSC+I P L FCD++ +D +E
Sbjct: 317 ISDSYQMGIFRILAGILHLGNVEFAS---RDSDSCAIPPKHDPLTIFCDLM-GVDYEEMA 372
Query: 121 RCLTHRKITTMQESFNKPMSV 141
L HRK+ T E++ KP+S
Sbjct: 373 HWLCHRKLATATETYIKPISK 393
Score = 48.6 bits (116), Expect = 1e-07
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+VRF IYTYCG
Sbjct: 82 EPAVLHNLKVRFIDSKLIYTYCG 104
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 81.2 bits (201), Expect = 5e-19
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
S Q IFRIL+ ILHLGN++F+ D+DSC+I P L FCD++ +D +E
Sbjct: 317 ISDSYQMGIFRILAGILHLGNVEFAS---RDSDSCAIPPKHDPLTIFCDLM-GVDYEEMA 372
Query: 121 RCLTHRKITTMQESFNKPMSV 141
L HRK+ T E++ KP+S
Sbjct: 373 HWLCHRKLATATETYIKPISK 393
Score = 48.8 bits (117), Expect = 1e-07
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+VRF IYTYCG
Sbjct: 82 EPAVLHNLKVRFIDSKLIYTYCG 104
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 77.8 bits (192), Expect = 7e-18
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS + + R++S++L GNI + D + P + + C +L + +F
Sbjct: 312 FSHEEIISMLRMVSAVLQFGNIALKRERNTD---QATMPDNTAAQKLCRLL-GLGVTDFS 367
Query: 121 RCLTHRKITTMQESFNKPMSV 141
R L +I ++ K +
Sbjct: 368 RALLTPRIKVGRDYVQKAQTK 388
Score = 32.7 bits (75), Expect = 0.035
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +VL+NL+ R+ IYTY G
Sbjct: 73 EASVLHNLRERY-YSGLIYTYSG 94
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 78.0 bits (192), Expect = 8e-18
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +Q I R++SS+L LGNI F + P + + C ++ I+ +F
Sbjct: 343 FTEEEQTSILRVVSSVLQLGNIVF---KKERNTDQASMPDNTAAQKVCHLM-GINVTDFT 398
Query: 121 RCLTHRKITTMQESFNKPMSV 141
R + +I ++ K +
Sbjct: 399 RSILTPRIKVGRDVVQKAQTK 419
Score = 35.2 bits (81), Expect = 0.005
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +VL+NL+ R+ IYTY G
Sbjct: 96 EASVLHNLRERY-FSGLIYTYSG 117
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 76.5 bits (189), Expect = 2e-17
Identities = 11/81 (13%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F++ ++ ++++ +I+H GN++F + + + ++ ++ +
Sbjct: 341 FTSEEKNSMYKLTGAIMHFGNMKFKL---KQREEQAEPDGTEEADKSAYLM-GLNSADLL 396
Query: 121 RCLTHRKITTMQESFNKPMSV 141
+ L H ++ E K +V
Sbjct: 397 KGLCHPRVKVGNEYVTKGQNV 417
Score = 33.0 bits (76), Expect = 0.023
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVLYNL+ R+ IYTY G
Sbjct: 98 EPAVLYNLKDRY-GSWMIYTYSG 119
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 75.5 bits (186), Expect = 5e-17
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS +Q IF+I++ ILHLGNI+F G + + +L A + ++
Sbjct: 336 FSQEEQMSIFKIIAGILHLGNIKF---EKGAGEGAVL-KDKTALNAASTVF-GVNPSVLE 390
Query: 121 RCLTHRKITTMQESFNKPMSV 141
+ L +I ++ + ++V
Sbjct: 391 KALMEPRILAGRDLVAQHLNV 411
Score = 34.3 bits (79), Expect = 0.010
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAV +NL+VR+ + IYTY G
Sbjct: 99 EPAVFHNLRVRY-NQDLIYTYSG 120
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 75.1 bits (185), Expect = 7e-17
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
F+ +++ +F+ +SILH+G ++F + + + + + I+ +
Sbjct: 340 FTKEEKQSMFKCTASILHMGEMKF---KQRPREEQAESDGTAEAEKVAFLC-GINAGDLL 395
Query: 121 RCLTHRKITTMQESFNKPMSV 141
+ L K+ E K ++
Sbjct: 396 KALLKPKVKVGTEMVTKGQNM 416
Score = 34.6 bits (80), Expect = 0.008
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +VLYNL+ R+ IYTY G
Sbjct: 96 EASVLYNLRSRY-TSGLIYTYSG 117
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 73.4 bits (181), Expect = 2e-16
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS +Q IF+I++ ILHLGNI+F G + + +L A + ++
Sbjct: 336 FSQEEQMSIFKIIAGILHLGNIKFEK---GAGEGAVL-KDKTALNAASTVF-GVNPSVLE 390
Query: 121 RCLTHRKITTMQESFNKPMSV 141
+ L +I ++ + ++V
Sbjct: 391 KALMEPRILAGRDLVAQHLNV 411
Score = 33.0 bits (76), Expect = 0.023
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAV +NL+VR+ + IYTY G
Sbjct: 99 EPAVFHNLRVRY-NQDLIYTYSG 120
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 73.4 bits (181), Expect = 3e-16
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 61 FSALDQEVIFRILSSILHLGNIQF-SGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEF 119
DQ I+RIL++ILH+GNI F + + SLAA L D+
Sbjct: 258 LKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCL-KTDQQSL 316
Query: 120 RRCLTHRKITTMQ----ESFNKPMSV 141
L +R I+T + PM
Sbjct: 317 SIALCYRSISTGVGKRCSVISVPMDC 342
Score = 41.4 bits (98), Expect = 3e-05
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E A + NL +R + + IYTY G
Sbjct: 21 ENAFIENLTMRH-KSDNIYTYIG 42
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 71.5 bits (176), Expect = 1e-15
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
++ +FR+++ +LHLGNI F S+ +L ++L +D+D+ R
Sbjct: 325 LDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELL-GLDQDDLR 383
Query: 121 RCLTHRKITTMQ-----ESFNKPMSV 141
LT R + T P+ V
Sbjct: 384 VSLTTRVMLTTAGGAKGTVIKVPLKV 409
Score = 44.2 bits (105), Expect = 4e-06
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +L+N++VR+ + IYTY
Sbjct: 66 EATLLHNIKVRY-SKDRIYTYVA 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.69
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 20/73 (27%)
Query: 71 RILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHRKITT 130
R L L G+++ + P+ + L +++F + L
Sbjct: 7 RPL--TLSHGSLEH---------VLLV-PT--ASFFIASQL----QEQFNKILPEPTEGF 48
Query: 131 MQESFNKPMSVFE 143
+ ++P + E
Sbjct: 49 AAD--DEPTTPAE 59
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3
d.122.1.2
Length = 390
Score = 26.3 bits (59), Expect = 4.1
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 12/37 (32%)
Query: 24 GFSALDQEVIFRILSSILHLG------NIQFSGGSHG 54
G A+ E+I LH G N QFSGG HG
Sbjct: 83 GVPAV--ELIL----CRLHAGGKFSNKNYQFSGGLHG 113
Score = 25.5 bits (57), Expect = 8.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 12/35 (34%)
Query: 62 SALDQEVIFRILSSILHLG------NIQFSGGSHG 90
A+ E+I LH G N QFSGG HG
Sbjct: 85 PAV--ELIL----CRLHAGGKFSNKNYQFSGGLHG 113
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI
topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB:
3lps_A*
Length = 408
Score = 25.9 bits (58), Expect = 6.3
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 24 GFSALDQEVIFRILSSILHLG------NIQFSGGSHG 54
+ E+I + LH G N FSGG HG
Sbjct: 102 KIPGV--ELIL----TRLHAGGKFNNRNYTFSGGLHG 132
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit
complex, antibiotic resistance, ATP-binding,
nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia
coli} PDB: 1s14_A*
Length = 201
Score = 25.1 bits (56), Expect = 8.8
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 12/37 (32%)
Query: 24 GFSALDQEVIFRILSSILHLG------NIQFSGGSHG 54
G A+ E+I LH G N QFSGG HG
Sbjct: 69 GVPAV--ELIL----CRLHAGGKFSNKNYQFSGGLHG 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.419
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,135,765
Number of extensions: 116312
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 41
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)