RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9984
(144 letters)
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 54.4 bits (130), Expect = 4e-10
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
S Q IFRIL+ ILHLGN++F+ D+DSC+I P L FCD L +D +E
Sbjct: 255 ISDSYQMGIFRILAGILHLGNVEFAS---RDSDSCAIPPKHDPLTIFCD-LMGVDYEEMA 310
Query: 121 RCLTHRKITTMQESFNKPMSV 141
L HRK+ T E++ KP+S
Sbjct: 311 HWLCHRKLATATETYIKPISK 331
Score = 42.4 bits (99), Expect = 6e-06
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVL+NL+VRF IYTYCG
Sbjct: 20 EPAVLHNLKVRFIDSKLIYTYCG 42
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 52.8 bits (126), Expect = 2e-09
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
DQ I+RIL++ILH+GNI F+ + T + ++ S A D+
Sbjct: 250 LKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLS 309
Query: 121 RCLTHRKITTMQESFNKPMSV 141
L +R I+T +SV
Sbjct: 310 IALCYRSISTGVGKRCSVISV 330
Score = 41.6 bits (97), Expect = 1e-05
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILS 74
G DQ I+RIL++ILH+GNI F+ + T + + D + + S
Sbjct: 249 GLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAAS 299
Score = 37.0 bits (85), Expect = 4e-04
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E A + NL +R + + IYTY G
Sbjct: 13 ENAFIENLTMRH-KSDNIYTYIG 34
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 52.8 bits (126), Expect = 2e-09
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDR 116
D F+ +++ +F+ +SILH+G ++F + + + + L I+
Sbjct: 288 DILGFTKEEKQSMFKCTASILHMGEMKFKQ---RPREEQAESDGTAEAEKVAF-LCGINA 343
Query: 117 DEFRRCLTHRKITTMQESFNKPMSVFEM 144
+ + L K+ E K ++ ++
Sbjct: 344 GDLLKALLKPKVKVGTEMVTKGQNMNQV 371
Score = 38.5 bits (89), Expect = 1e-04
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +VLYNL+ R+ IYTY G
Sbjct: 48 EASVLYNLRSRY-TSGLIYTYSG 69
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 50.1 bits (119), Expect = 1e-08
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 57 DSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDR 116
D FSA ++ I+++ +++H GN++F + + A ++
Sbjct: 290 DILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMG----LNS 345
Query: 117 DEFRRCLTHRKITTMQESFNKPMSV 141
E + L + ++ E+ K +V
Sbjct: 346 AELLKALCYPRVGVGNEAVTKGETV 370
Score = 38.9 bits (90), Expect = 8e-05
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAVLYNL+ R+ IYTY G
Sbjct: 50 EPAVLYNLKERYAA-WMIYTYSG 71
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 49.7 bits (118), Expect = 2e-08
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 61 FSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFR 120
FS +Q IF+I++ ILHLGNI+F G+ ++ +L A + ++
Sbjct: 289 FSQEEQMSIFKIIAGILHLGNIKFEKGAG----EGAVLKDKTALNAASTVFG-VNPSVLE 343
Query: 121 RCLTHRKITTMQESFNKPMSVFEM 144
+ L +I ++ + ++V +
Sbjct: 344 KALMEPRILAGRDLVAQHLNVEKS 367
Score = 40.8 bits (95), Expect = 2e-05
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 13 FCQHNAIYTYCGFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQ 66
F GFS +Q IF+I++ ILHLGNI+F G+ +AL+
Sbjct: 277 FKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNA 330
Score = 37.8 bits (87), Expect = 2e-04
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
EPAV +NL+VR+ + IYTY G
Sbjct: 52 EPAVFHNLRVRY-NQDLIYTYSG 73
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 37.8 bits (87), Expect = 2e-04
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 2 EPAVLYNLQVRFCQHNAIYTYCG 24
E +VL+NL+ R+ IYTY G
Sbjct: 18 EASVLHNLRERYFS-GLIYTYSG 39
Score = 36.6 bits (84), Expect = 5e-04
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 40/118 (33%)
Query: 24 GFSALDQEVIFRILSSILHLGNIQFSGGSHGDTDSCSFSALDQEVIFRILSSILHLGNIQ 83
GF+ +Q I R++SS+L LGNI F
Sbjct: 264 GFTEEEQTSILRVVSSVLQLGNIVF----------------------------------- 288
Query: 84 FSGGSHGDTDSCSIAPSSGSLAAFCDILYNIDRDEFRRCLTHRKITTMQESFNKPMSV 141
+ ++ + + A L I+ +F R + +I ++ K +
Sbjct: 289 -----KKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTK 341
>d1xb4a2 a.4.5.54 (A:126-199) Vacuolar protein sorting-associated
protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 74
Score = 25.8 bits (57), Expect = 0.91
Identities = 3/37 (8%), Positives = 12/37 (32%)
Query: 55 DTDSCSFSALDQEVIFRILSSILHLGNIQFSGGSHGD 91
+T + F + + +++ L + +
Sbjct: 34 ETVNWEFHRMPESLLYYCLKPLCDRNRATMLKDENDK 70
>d1szha_ a.226.1.1 (A:) Her-1 {Caenorhabditis elegans [TaxId: 6239]}
Length = 147
Score = 25.8 bits (56), Expect = 1.6
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 108 CDILYNIDRDEFRRCLTHRKITTMQ 132
C + N D RRC R M
Sbjct: 73 CSVFGNDQEDSGRRCEN-RCKNLMT 96
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 138
Score = 23.6 bits (51), Expect = 9.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 110 ILYNIDRDEFRRCLTHRK 127
+LY ++ D + C K
Sbjct: 51 VLYMVNFDGYSACDHTSK 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.419
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,802
Number of extensions: 21701
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 24
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.1 bits)