Query psy9993
Match_columns 605
No_of_seqs 314 out of 334
Neff 4.9
Searched_HMMs 29240
Date Sat Aug 17 00:54:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g38_B PPE family protein; pro 97.3 2.3E-05 7.7E-10 76.7 -0.7 45 113-157 125-172 (198)
2 1dev_B SMAD anchor for recepto 10.8 52 0.0018 24.2 -0.1 8 585-592 10-17 (41)
3 3n90_A P15, thylakoid lumenal 9.8 7.7E+02 0.026 21.6 7.4 59 39-97 33-91 (152)
4 3n90_A P15, thylakoid lumenal 6.3 1E+03 0.036 20.7 6.6 95 11-105 15-110 (152)
5 2xt2_A ALBG, MCBG-like protein 5.7 1.1E+03 0.038 20.9 6.6 57 49-105 102-158 (200)
6 2xt2_A ALBG, MCBG-like protein 3.8 1.3E+03 0.044 20.5 5.5 33 73-105 106-138 (200)
7 2bm5_A MFPA, RV3361C, pentapep 3.5 1.2E+03 0.04 20.8 4.9 73 34-106 72-144 (186)
8 3pss_A QNR; pentapeptide repea 3.5 9.5E+02 0.032 21.7 4.3 27 74-100 73-99 (216)
9 4hfx_A Transcription elongatio 3.4 2.4E+02 0.0084 24.4 0.1 12 578-589 15-26 (97)
10 2a40_C Wiskott-aldrich syndrom 3.1 1.8E+02 0.0061 20.5 -0.9 9 4-12 4-12 (32)
No 1
>2g38_B PPE family protein; protein-protein complex, structural genomics, PSI, protein S initiative, TB structural genomics consortium, TBSGC; 2.20A {Mycobacterium tuberculosis} SCOP: a.25.4.2
Probab=97.35 E-value=2.3e-05 Score=76.66 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=40.6
Q ss_pred cCCChHHHH---HHHhhhcccCCCccccccccchhhhhcccccccccc
Q psy9993 113 LGYSASEID---SELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDR 157 (605)
Q Consensus 113 ~G~~~~~i~---~~~~~~w~~dv~~m~gy~~~asaaAaaL~~~G~t~~ 157 (605)
+|+|.+.|+ ++|++||+||.++|.+|+..+++++++|.+|..+.+
T Consensus 125 fGqNt~aIAa~EA~Y~~MWaQdaaaM~~Y~a~asaa~~~l~pf~~pp~ 172 (198)
T 2g38_B 125 LGQFTAQIADLDQEYDDFWDEDGEVMRDYRLRVSDALSKLTPWKAPPP 172 (198)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999984 789999999999999999988999999999986643
No 2
>1dev_B SMAD anchor for receptor activation; beta sheet, three-helix bundle, signaling protein; 2.20A {Homo sapiens} SCOP: j.64.1.1 PDB: 1mk2_B
Probab=10.77 E-value=52 Score=24.18 Aligned_cols=8 Identities=38% Similarity=0.468 Sum_probs=6.5
Q ss_pred ceeeeeec
Q psy9993 585 LEYATVIW 592 (605)
Q Consensus 585 LEY~s~vW 592 (605)
+||||.|=
T Consensus 10 mEYCStiP 17 (41)
T 1dev_B 10 AEYCSTIP 17 (41)
T ss_dssp GGTCBCSC
T ss_pred chhhccCC
Confidence 79999874
No 3
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=9.77 E-value=7.7e+02 Score=21.58 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=24.0
Q ss_pred ccccCCcccccccccccccccccccCcccCccccccccccccccccccccccccCcccc
Q psy9993 39 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNL 97 (605)
Q Consensus 39 ~~~~g~~n~G~~~~g~~n~G~~n~g~~n~G~~~~~l~n~Gf~n~gl~n~Gf~~~g~~n~ 97 (605)
|....+..+=|..+.+..+=|...-+..+=|...-+.++=|..+.+.++-|..+-+..+
T Consensus 33 f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a 91 (152)
T 3n90_A 33 FKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGA 91 (152)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred cCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCC
Confidence 33333333333334444443443334434444444444444444444444444444433
No 4
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=6.32 E-value=1e+03 Score=20.65 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=55.8
Q ss_pred ccccccccccccccccccccccccccccccccCCcccccccccccccccccccCcccCcccccccccccccccccccccc
Q psy9993 11 DRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLT 90 (605)
Q Consensus 11 ~~~~~~~~~~~~~~~nlG~~~~g~~n~G~~~~g~~n~G~~~~g~~n~G~~n~g~~n~G~~~~~l~n~Gf~n~gl~n~Gf~ 90 (605)
+.-+....+....+.+.-|...-+..+=|....+..+=|..+.+..+=|....+..+=|....+.++=|.++.+..+=|.
T Consensus 15 ~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~ 94 (152)
T 3n90_A 15 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMM 94 (152)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred CCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEc
Confidence 34444444555555555566666666666666666666666666666666666666666666666666666666666554
Q ss_pred -ccCcccccccccccc
Q psy9993 91 -DRGLTNLGLTDRDVT 105 (605)
Q Consensus 91 -~~g~~n~Gf~~~~~~ 105 (605)
.+.+...=|...++.
T Consensus 95 g~~~~~~a~l~~a~~~ 110 (152)
T 3n90_A 95 GNTSFKGSNITGADFT 110 (152)
T ss_dssp SSCBCTTCBCTTCBCT
T ss_pred CCceECCCEecCCEec
Confidence 344444444444433
No 5
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=5.71 E-value=1.1e+03 Score=20.89 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=23.8
Q ss_pred cccccccccccccccCcccCccccccccccccccccccccccccCcccccccccccc
Q psy9993 49 LTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVT 105 (605)
Q Consensus 49 ~~~~g~~n~G~~n~g~~n~G~~~~~l~n~Gf~n~gl~n~Gf~~~g~~n~Gf~~~~~~ 105 (605)
|..+.+..+-|...-++.+=|....+..+=|..+.+.++-|..+-+..+=|...+++
T Consensus 102 f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~ 158 (200)
T 2xt2_A 102 FERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLT 158 (200)
T ss_dssp EESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCT
T ss_pred EEcCcccccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccc
Confidence 333333333333333333334444444444444444444444444444444444433
No 6
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=3.83 E-value=1.3e+03 Score=20.47 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=13.9
Q ss_pred ccccccccccccccccccccCcccccccccccc
Q psy9993 73 VLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVT 105 (605)
Q Consensus 73 ~l~n~Gf~n~gl~n~Gf~~~g~~n~Gf~~~~~~ 105 (605)
.+.++=|..+.+.++-|..+.+..+=|...++.
T Consensus 106 ~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~ 138 (200)
T 2xt2_A 106 ILNDSLFYGLYLAGVKMVECRIHDANFTEADCE 138 (200)
T ss_dssp BCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCT
T ss_pred cccccEEccCccCCCEecCCEeecccCCCCccc
Confidence 334444444444444444444444444444443
No 7
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=3.53 E-value=1.2e+03 Score=20.82 Aligned_cols=73 Identities=25% Similarity=0.208 Sum_probs=36.0
Q ss_pred cccccccccCCcccccccccccccccccccCcccCccccccccccccccccccccccccCccccccccccccc
Q psy9993 34 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTD 106 (605)
Q Consensus 34 ~~n~G~~~~g~~n~G~~~~g~~n~G~~n~g~~n~G~~~~~l~n~Gf~n~gl~n~Gf~~~g~~n~Gf~~~~~~~ 106 (605)
+..+=|....+..+=|..+.+..+-|....++.+=|....+.++=|..+.++++=|..+-+..+=|...++..
T Consensus 72 l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~ 144 (186)
T 2bm5_A 72 MLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDD 144 (186)
T ss_dssp CTTCEEESCBCCSCEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred cCCCcccCCeeccCEEeccCcCcCccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCC
Confidence 3333333333444444444444444444555555555555555555555555555555555555555544444
No 8
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=3.49 E-value=9.5e+02 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=10.3
Q ss_pred cccccccccccccccccccCccccccc
Q psy9993 74 LTNLGLTDRGLTNLGLTDRGLTNLGLT 100 (605)
Q Consensus 74 l~n~Gf~n~gl~n~Gf~~~g~~n~Gf~ 100 (605)
+.++=|..+.+..+-|..+-+..+=|.
T Consensus 73 l~~~~f~~a~l~~~~f~~~~l~~a~f~ 99 (216)
T 3pss_A 73 LTMADCSRSQCLGLELRDCQALGINFS 99 (216)
T ss_dssp CTTCBCTTCBCTTEEEESCBCTTCBCT
T ss_pred CCCCccCCCCcccCCcccCcccCCCcc
Confidence 333333333333333333333333333
No 9
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=3.43 E-value=2.4e+02 Score=24.37 Aligned_cols=12 Identities=33% Similarity=0.169 Sum_probs=0.0
Q ss_pred eeeeeccceeee
Q psy9993 578 TSLDRSKLEYAT 589 (605)
Q Consensus 578 ~slVRp~LEY~s 589 (605)
+.|+||+||.|+
T Consensus 15 y~lL~PVLek~t 26 (97)
T 4hfx_A 15 YSVLEPVLERCT 26 (97)
T ss_dssp -----CCGGGCC
T ss_pred HHHHHHHHccCC
No 10
>2a40_C Wiskott-aldrich syndrome protein family member 2; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus}
Probab=3.10 E-value=1.8e+02 Score=20.46 Aligned_cols=9 Identities=56% Similarity=0.722 Sum_probs=0.0
Q ss_pred ccccchhcc
Q psy9993 4 SRSDLLTDR 12 (605)
Q Consensus 4 ~~~~~~~~~ 12 (605)
+|||||.++
T Consensus 4 ~RsdLL~~I 12 (32)
T 2a40_C 4 ARSDLLSAI 12 (32)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Done!