RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9993
(605 letters)
>gnl|CDD|184851 PRK14849, PRK14849, putative lipoprotein/autotransporter
domain-containing protein; Provisional.
Length = 1806
Score = 33.6 bits (76), Expect = 0.38
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 130 YEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG- 188
Y NG + S + L+ ++ + +G+ D + +TD+G N T + + D G
Sbjct: 297 YFGNGTVNISNNGLINNKEYSLVGVQDGSHGVVNVTDKGHWNFLGTGEAFRYIYIGDAGD 356
Query: 189 ----LTNLGLTDRGLTNLGLTDRGLTNLGLTDRG--LTNLGLTDRGLTNLGLTDRGLTNL 242
++ G D G+ G+ + G N+ + D+ +TNLG TNLG G N+
Sbjct: 357 GELNVSREGKVDSGIITAGMKETGTGNITVKDKNSVITNLG------TNLGYDGHGEMNI 410
Query: 243 G----LTDRGLTNLGLTDRGLTNLGLTDRGL--------TNLGLTDRGLTNLGLTDRGLT 290
+ G ++LG + G+ N+ +T G+ T +G+ G+ NL ++D G
Sbjct: 411 SNEGLVVSNGGSSLGYGETGVGNVSITTGGMWEVNKNVYTTIGVA--GVGNLNISDGG-- 466
Query: 291 NLGLTDRGLTNLGLTDRGLTNLGLTD 316
+ +T LG G+ L L D
Sbjct: 467 --KFVSQNITFLGDKASGIGTLNLMD 490
Score = 32.0 bits (72), Expect = 1.2
Identities = 44/202 (21%), Positives = 86/202 (42%), Gaps = 18/202 (8%)
Query: 23 GLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDR 82
G + +++ GL N ++ + +G+ D + +TD+G N T + + D
Sbjct: 299 GNGTVNISNNGLIN----NKEYSLVGVQDGSHGVVNVTDKGHWNFLGTGEAFRYIYIGDA 354
Query: 83 GLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSD 142
G L ++ G + G+ + + G G + + + L + Y+ +G + S
Sbjct: 355 GDGELNVSREGKVDSGIITAGMKETGTGNITVKDKNSVITNLGTNLGYDGHGEMNISNEG 414
Query: 143 LLTDRGLTKLGLTDRGLTNLGLTDRGL--------TNLGLTDRGLTNLGLTDRGLTNLGL 194
L+ G + LG + G+ N+ +T G+ T +G+ G+ NL ++D G
Sbjct: 415 LVVSNGGSSLGYGETGVGNVSITTGGMWEVNKNVYTTIGVA--GVGNLNISDGG----KF 468
Query: 195 TDRGLTNLGLTDRGLTNLGLTD 216
+ +T LG G+ L L D
Sbjct: 469 VSQNITFLGDKASGIGTLNLMD 490
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1. Amn1
has been functionally characterized in Saccharomyces
cerevisiae as a component of the Antagonist of MEN
pathway (AMEN). The AMEN network is activated by MEN
(mitotic exit network) via an active Cdc14, and in turn
switches off MEN. Amn1 constitutes one of the
alternative mechanisms by which MEN may be disrupted.
Specifically, Amn1 binds Tem1 (Termination of M-phase, a
GTPase that belongs to the RAS superfamily), and
disrupts its association with Cdc15, the primary
downstream target. Amn1 is a leucine-rich repeat (LRR)
protein, with 12 repeats in the S. cerevisiae ortholog.
As a negative regulator of the signal transduction
pathway MEN, overexpression of AMN1 slows the growth of
wild type cells. The function of the vertebrate members
of this family has not been determined experimentally,
they have fewer LRRs that determine the extent of this
model.
Length = 226
Score = 30.4 bits (69), Expect = 2.4
Identities = 35/113 (30%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 7 DLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD-RGLTNLGLTDRGLT 65
L L KL L + + D GL L + NL + D R N+ TD G+
Sbjct: 47 QLSNCNKLKKLILP----GSKLIDDEGLIALA---QSCPNLQVLDLRACENI--TDSGIV 97
Query: 66 NLGLTDRVLT--NLG-------LTDRGLTNLGLTDRGLTNLGLTDRDVTDDGV 109
L L NLG +TD L+ LG L +G DVTD GV
Sbjct: 98 ALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGV 150
>gnl|CDD|173948 cd08189, Fe-ADH5, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde
to alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and belongs to the
alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which
contains different protein domain. Proteins of this
family have not been characterized. Their specific
function is unknown.
Length = 374
Score = 29.8 bits (68), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 49 LTDRGLTN-LGLTDRGLTNLGLTDRVLTNL 77
++ G+ L +TD+GL LGL D+VL L
Sbjct: 21 ISQLGVKKVLIVTDKGLVKLGLLDKVLEAL 50
>gnl|CDD|182040 PRK09707, PRK09707, putative lipoprotein; Provisional.
Length = 1343
Score = 28.9 bits (64), Expect = 9.6
Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 14/178 (7%)
Query: 47 LGLTDRGLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTD 106
+G+ D + +TD+G N T + + D G L ++ G + G+ + +
Sbjct: 319 VGVQDGSHGVVNVTDKGHWNFLGTGEAFRYIYIGDAGDGELNVSREGKVDSGIITAGMKE 378
Query: 107 DGVGAALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTD 166
G G + + + L + Y+ +G + S L+ G + LG + G+ + +T
Sbjct: 379 TGTGNLTVKDKNSVITNLGTNLGYDGHGEMNISNEGLVVSNGGSSLGYGETGVGKVSITT 438
Query: 167 RGL--------TNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD 216
G+ T +G+ G+ NL ++D G + +T LG G+ L L D
Sbjct: 439 GGIWEVNKNVYTTIGVA--GVGNLNISDGG----KFVSQNITFLGDKASGIGTLNLMD 490
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.141 0.404
Gapped
Lambda K H
0.267 0.0844 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,024,759
Number of extensions: 3104846
Number of successful extensions: 2672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 193
Length of query: 605
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 502
Effective length of database: 6,369,140
Effective search space: 3197308280
Effective search space used: 3197308280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (27.4 bits)