RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9993
(605 letters)
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 85.7 bits (212), Expect = 1e-17
Identities = 81/425 (19%), Positives = 133/425 (31%), Gaps = 45/425 (10%)
Query: 144 LTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL- 202
D L G G + + L + L + +TD L + + + L
Sbjct: 79 FADFNLVPDGW--GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136
Query: 203 -----GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDR 257
G + GL + T R L L L + + ++ + L++ T L +L ++
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV--SGHWLSHFPDTYTSLVSLNISC- 193
Query: 258 GLTNLGLTDRGLTNLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNLGLTDRGLTNLG 313
++ L L L +L L L L L LG
Sbjct: 194 --LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251
Query: 314 LTDRGLTNLGLTDRGLTNL----GLTDRGLTNLGLTDRGLTNLGL-----TDRGLTNLGL 364
GL+ + L L L + LT L L L L
Sbjct: 252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311
Query: 365 TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD----RGLTNLGLTDRGLT 420
L L + D + D GL L T + L L + N+ LT++GL
Sbjct: 312 QCPKLQRLWVLDY------IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365
Query: 421 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLT 480
++ + L ++ R +TN L +T L + L D G
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425
Query: 481 NLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNL-----GLTDRGLTNLGLTDRGLTN 531
+ + L L L TD+ +G + + L G +D G+ ++ L
Sbjct: 426 AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485
Query: 532 LGLTD 536
L + D
Sbjct: 486 LEIRD 490
Score = 83.8 bits (207), Expect = 5e-17
Identities = 77/416 (18%), Positives = 130/416 (31%), Gaps = 41/416 (9%)
Query: 144 LTDRGLTKLGLTDRGLTNL------GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDR 197
+TD L + + + L G + GL + T R L L L + + ++ +
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV--SGH 174
Query: 198 GLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL----TDRGLTNLG 253
L++ T L +L ++ ++ L L L +L L L L
Sbjct: 175 WLSHFPDTYTSLVSLNISC---LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231
Query: 254 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL----GLTDRGLTNLGLTDRGL 309
L LG GL+ + L L L + L
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRL 291
Query: 310 TNLGL-----TDRGLTNLGLTDRGLTNL----GLTDRGLTNLGLTDRGLTNLGLTD---- 356
T L L L L L L + D GL L T + L L +
Sbjct: 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351
Query: 357 RGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD 416
N+ LT++GL ++ + L ++ R +TN L +T L +
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411
Query: 417 RGLTNLGLTDRGLTNLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNLGLTDRGLTNL 472
L D G + + L L L TD+ +G + + L + G ++L
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471
Query: 473 GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL-----TDRGLTNLG 523
G+ L + + D+ L + +L + + LG
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527
Score = 80.7 bits (199), Expect = 4e-16
Identities = 88/484 (18%), Positives = 147/484 (30%), Gaps = 54/484 (11%)
Query: 9 LTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 68
D L G G + + L + L + +TD L + + + L
Sbjct: 79 FADFNLVPDGW--GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136
Query: 69 LTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVG--AALGYSASEIDSELNY 126
L+ G + GL + T R L L L + DV D + + + + LN
Sbjct: 137 LSS----CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL-VSLNI 191
Query: 127 SWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNL 182
S + ++ L +L L +L L L L L L
Sbjct: 192 SC-----------LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
Query: 183 GLTDRGLTNLGLTDRGLTNLGLTDRGLTNL----GLTDRGLTNLGLTDRGLTNLGLTDRG 238
G GL+ + L L L + LT L L+
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS--- 297
Query: 239 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD-- 296
+ L L L L + D + D GL L T + L L +
Sbjct: 298 --YATVQSYDLVKLLCQCPKLQRLWVLDY------IEDAGLEVLASTCKDLRELRVFPSE 349
Query: 297 --RGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL 354
N+ LT++GL ++ + L ++ R +TN L +T L +
Sbjct: 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409
Query: 355 TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL 414
L D G + + L L L+ LTD+ +G + + L +
Sbjct: 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG------LLTDKVFEYIGTYAKKMEMLSV 463
Query: 415 TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL-----TDRGL 469
G ++LG+ L + + D+ L + +L + +
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGAC 523
Query: 470 TNLG 473
LG
Sbjct: 524 KLLG 527
Score = 65.7 bits (160), Expect = 2e-11
Identities = 60/349 (17%), Positives = 102/349 (29%), Gaps = 37/349 (10%)
Query: 6 SDLLTDRGLTKLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD 61
+ ++ L +L L +L L L L L LG
Sbjct: 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254
Query: 62 RGLTNLGLTDRVLTNL----GLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSA 117
GL+ + L L L + LT L L+ V + L
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314
Query: 118 SEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTD----RGLTNLG 173
+ D + D GL L T + L L + N+
Sbjct: 315 KLQRLWV----------------LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358
Query: 174 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 233
LT++GL ++ + L ++ R +TN L +T L + L
Sbjct: 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418
Query: 234 LTDRGLTNLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 289
D G + + L L L TD+ +G + + L + G ++LG+
Sbjct: 419 PLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478
Query: 290 TNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL-----TDRGLTNLG 333
L + + D+ L + +L + + LG
Sbjct: 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLG 527
Score = 62.6 bits (152), Expect = 2e-10
Identities = 62/334 (18%), Positives = 105/334 (31%), Gaps = 39/334 (11%)
Query: 224 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 283
D L G G + + L + L + +TD L + + + L
Sbjct: 79 FADFNLVPDGW--GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136
Query: 284 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 343
L+ G + GL + T R L L L + + ++ + L++ T L +L
Sbjct: 137 LSS----CEGFSTDGLAAIAATCRNLKELDLRESDVDDV--SGHWLSHFPDTYTSLVSLN 190
Query: 344 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL----TDRGLTNLGLTDRGLTNLGLTDRGL 399
++ ++ L L L +L L L L L LG
Sbjct: 191 ISC---LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247
Query: 400 TNLGLTDRGLTNLGLTDRGLTNL----GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 455
GL+ + L L L + LT L L+ +
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS-----YATVQ 302
Query: 456 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD----RGLTN 511
L L L L + D + D GL L T + L L + N
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDY------IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356
Query: 512 LGLTDRGLTNLGLTDRGLTNL-----GLTDRGLT 540
+ LT++GL ++ + L ++ +T+ L
Sbjct: 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390
Score = 51.8 bits (124), Expect = 5e-07
Identities = 44/262 (16%), Positives = 82/262 (31%), Gaps = 27/262 (10%)
Query: 4 SRSDLLTDRGLTKLGLTDRGLTNLGL-----TDRGLTNLGLTDRGLTNL----GLTDRGL 54
S L + LT L L L L L L + D GL
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330
Query: 55 TNLGLTDRGLTNLGLTD----RVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVG 110
L T + L L + + N+ LT++GL ++ + L ++ R +T+ +
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL- 389
Query: 111 AALGYSASEIDSELNYSWNYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGL----TD 166
+ + + + A + D G + + L L L TD
Sbjct: 390 ITIARNRPNM-TRFRLCII---EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTD 445
Query: 167 RGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTD 226
+ +G + + L + G ++LG+ L + + D+ L
Sbjct: 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505
Query: 227 RGLTNLGL-----TDRGLTNLG 243
+ +L + + LG
Sbjct: 506 ETMRSLWMSSCSVSFGACKLLG 527
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 78.4 bits (193), Expect = 2e-15
Identities = 82/417 (19%), Positives = 133/417 (31%), Gaps = 44/417 (10%)
Query: 153 GLTDRGLTNLGLTDRGLTNLGLTD-RGLTNL------GLTDRGLTNLGLTDRGLTNLGLT 205
L + ++D L L L L G T GL ++ R + L +
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172
Query: 206 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 265
+ + + L L + L L + + + L + R L ++ +
Sbjct: 173 ESSFSEKD--GKWLHELAQHNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVG 228
Query: 266 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL---TDRGLTNL 322
D + L + NL G N + + R L LGL + L
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288
Query: 323 GLTDRGLTNLGLTDRGLTNLGLTD--RGLTNL-------GLTDRGLTNLGLTDRGLTNLG 373
+ L L L + NL + DRGL L + L L
Sbjct: 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348
Query: 374 L------TDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDR 427
+ ++ RGL L + L + + +TN L G L D
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408
Query: 428 GLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG---- 483
L L +R +T+L L D G+ +L + + L R GLTD GL+ +G
Sbjct: 409 RLVLLDREER-ITDLPL-DNGVRSLLIGCKKLRRFAFYLRQ---GGLTDLGLSYIGQYSP 463
Query: 484 -LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL-----TDRGLTNLGLTDRGLTNLGL 534
+ L +G +D GL L L + ++R + L L +
Sbjct: 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520
Score = 72.3 bits (177), Expect = 2e-13
Identities = 84/425 (19%), Positives = 134/425 (31%), Gaps = 47/425 (11%)
Query: 147 RGLTKLGLT-DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 205
L L L L G +T + R L ++ + ++
Sbjct: 73 PNLRSLKLKGKPRAAMFNLIPENWG--GYVTPWVTEISNNLRQLKSVHFR-----RMIVS 125
Query: 206 DRGLTNLGLTD-RGLTNL------GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 258
D L L L L G T GL ++ R + L + + + +
Sbjct: 126 DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD--GKW 183
Query: 259 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 318
L L + L L + + + L + R L ++ + D + L +
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241
Query: 319 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL---TDRGLTNLGLTDRGLTNLGLT 375
NL G N + + R L LGL + L + L L
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301
Query: 376 DRGLTNLGLTD--RGLTNL-------GLTDRGLTNLGLTDRGLTNLGL------TDRGLT 420
L + NL + DRGL L + L L +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361
Query: 421 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLT 480
++ RGL L + L + + +TN L G L D L L +R +T
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER-IT 420
Query: 481 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG-----LTDRGLTNLGLT 535
+L L D G+ +L + + L R GLTD GL+ +G + L +G +
Sbjct: 421 DLPL-DNGVRSLLIGCKKLRRFAFYLRQG---GLTDLGLSYIGQYSPNVRWMLLGYVGES 476
Query: 536 DRGLT 540
D GL
Sbjct: 477 DEGLM 481
Score = 71.9 bits (176), Expect = 3e-13
Identities = 75/431 (17%), Positives = 137/431 (31%), Gaps = 45/431 (10%)
Query: 4 SRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 63
+ T GL + R + L + + + + L L + L L
Sbjct: 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD--GKWLHELAQHNTSLEVLNFYMTE 203
Query: 64 LTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSE 123
++ + L + R L ++ + D ++ + +A+ ++
Sbjct: 204 FAK------------ISPKDLETIARNCRSLVSVKVGDFEILEL---VGFFKAAANLEEF 248
Query: 124 LNYSWNYEPNGMAHYSRSDLLTDRGLTKLGL---TDRGLTNLGLTDRGLTNLGLTDRGLT 180
S N + Y +L+ R L +LGL + L + L L L
Sbjct: 249 CGGSLNEDIGMPEKY--MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306
Query: 181 NLGLTD--RGLTNL-------GLTDRGLTNLGLTDRGLTNLGL------TDRGLTNLGLT 225
+ NL + DRGL L + L L + ++
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366
Query: 226 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 285
RGL L + L + + +TN L G L D L L +R +T+L L
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER-ITDLPL- 424
Query: 286 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 345
D G+ +L + + L R GLTD GL+ +G + + L G ++ GL
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQ---GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481
Query: 346 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 405
+ L + ++R + L L + +T + L +
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG---YRASMTGQDLMQMARP 538
Query: 406 DRGLTNLGLTD 416
+ +
Sbjct: 539 YWNIELIPSRR 549
Score = 57.6 bits (139), Expect = 6e-09
Identities = 57/333 (17%), Positives = 97/333 (29%), Gaps = 37/333 (11%)
Query: 237 RGLTNLGLT-DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 295
L +L L L G +T + R L ++ + ++
Sbjct: 73 PNLRSLKLKGKPRAAMFNLIPENWG--GYVTPWVTEISNNLRQLKSVHFR-----RMIVS 125
Query: 296 DRGLTNLGLTD-RGLTNL------GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 348
D L L L L G T GL ++ R + L + + + +
Sbjct: 126 DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD--GKW 183
Query: 349 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 408
L L + L L + + + L + R L ++ + D + L +
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241
Query: 409 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL---TDRGLTNLGLTDRGLTNLGLT 465
NL G N + + R L LGL + L + L L
Sbjct: 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301
Query: 466 DRGLTNLGLTD--RGLTNL-------GLTDRGLTNLGLTDRGLTNLGL------TDRGLT 510
L + NL + DRGL L + L L +
Sbjct: 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361
Query: 511 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTPEA 543
++ RGL L + L + + +T E+
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394
Score = 33.4 bits (76), Expect = 0.25
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 3 YSRSDLLTDRGLTKLG-----LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGL-----TDR 52
Y R LTD GL+ +G + L +G +D GL L L + ++R
Sbjct: 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503
Query: 53 GLTNLGLTDRGLTNLGLTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTD-RDVTDDGV 109
+ L L + +T + L + + + +V G
Sbjct: 504 AIAAAVTKLPSLRYLWVQG---YRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGE 558
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 59.5 bits (144), Expect = 2e-09
Identities = 83/348 (23%), Positives = 128/348 (36%), Gaps = 9/348 (2%)
Query: 247 RGLTNLGLTDRGLTNLGLTD-RGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 305
G L + + GLT L +T L + D LT+L L L ++ LT+L +
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL 99
Query: 306 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 365
GL L + LT+L GL L + LT+L + GL L ++D L +L
Sbjct: 100 PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL 159
Query: 366 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 425
L L + LT+L + GL L ++D L +L L L + LT+L
Sbjct: 160 PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL 219
Query: 426 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL--G 483
GL L ++ LT+L + L L ++ LT+L + GL +L + LT L
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPES 279
Query: 484 LTD-RGLTNLGLTDRGLTNL-GLTDRGLTNLGLTDRGLTNLGLTDRGLT----NLGLTDR 537
L T + L L+ R +T+ + + L L
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339
Query: 538 GLTPEAYQSGPGIIGLSHASGMIFRNSNFFQNIDTLRLLYTSLDRSKL 585
A + P H G F +D L + +
Sbjct: 340 DWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGF 387
Score = 53.0 bits (127), Expect = 2e-07
Identities = 61/219 (27%), Positives = 95/219 (43%)
Query: 144 LTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 203
+ D LT L L L ++ LT+L + GL L + LT+L GL L
Sbjct: 68 IPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW 127
Query: 204 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 263
+ LT+L + GL L ++D L +L L L + LT+L + GL L
Sbjct: 128 IFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELS 187
Query: 264 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 323
++D L +L L L + LT+L GL L ++ LT+L + L L
Sbjct: 188 VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELM 247
Query: 324 LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL 362
++ LT+L + GL +L + LT L + L++
Sbjct: 248 VSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSE 286
Score = 41.0 bits (96), Expect = 0.001
Identities = 66/282 (23%), Positives = 105/282 (37%), Gaps = 36/282 (12%)
Query: 12 RGLTKLGLTDRGLTNLGLTD-RGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 70
G L + + GLT L +T L + D LT+L L L ++ LT+L +
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL 99
Query: 71 DRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSWNY 130
L L + LT+L GL L + +T +
Sbjct: 100 PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-------------SLPVLPP----- 141
Query: 131 EPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLT 190
GL +L ++D L +L L L + LT+L + GL
Sbjct: 142 -----------------GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184
Query: 191 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLT 250
L ++D L +L L L + LT+L GL L ++ LT+L + L
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244
Query: 251 NLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL 292
L ++ LT+L + GL +L + LT L + L++
Sbjct: 245 ELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSE 286
Score = 35.6 bits (82), Expect = 0.044
Identities = 63/264 (23%), Positives = 98/264 (37%), Gaps = 45/264 (17%)
Query: 9 LTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 68
+ D LT L L L ++ LT+L + GL L + LT+L GL L
Sbjct: 68 IPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLW 127
Query: 69 LTDRVLTNLGLTDRGLTNLGLTDRGLTNLGLTDRDVTDDGVGAALGYSASEIDSELNYSW 128
+ LT+L + GL L ++D L +L
Sbjct: 128 IFGNQLTSLPVLPPGLQELSVSDNQLASL------------------------------- 156
Query: 129 NYEPNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 188
P + L KL + LT+L + GL L ++D L +L
Sbjct: 157 ---PALPSE-----------LCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE 202
Query: 189 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 248
L L + LT+L GL L ++ LT+L + L L ++ LT+L + G
Sbjct: 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSG 262
Query: 249 LTNLGLTDRGLTNLGLTDRGLTNL 272
L +L + LT L + L++
Sbjct: 263 LLSLSVYRNQLTRLPESLIHLSSE 286
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 34.7 bits (79), Expect = 0.099
Identities = 31/244 (12%), Positives = 72/244 (29%), Gaps = 10/244 (4%)
Query: 159 LTNLGLTDRGLTNLGLTDRGLTNL---GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 215
LT+ L + L DR +N +T + +R + + +N T
Sbjct: 22 LTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFN--FSNSKFT 79
Query: 216 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 275
+++L + T L+D +N ++ + + L T + T
Sbjct: 80 YSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNTL 139
Query: 276 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 335
R N L+ L + + G L ++ L L D L +
Sbjct: 140 IRHKAN--LSGVILNEPDNSSPPSVSGGGNFIRLGDIWLQMPLLWTENAVDGFLNHEHNN 197
Query: 336 DRGL---TNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL 392
+ + + + + + +L + + L ++ +
Sbjct: 198 GKSILMTIDSLPDKYSQEKVQAMEDLVKSLRGGRLTEACIRPVESSLVSVLAHPPYTQSA 257
Query: 393 GLTD 396
+++
Sbjct: 258 LISE 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.11
Identities = 30/154 (19%), Positives = 44/154 (28%), Gaps = 48/154 (31%)
Query: 494 LT--DRGLTN-LGLTDRGLTNLGLTDRGLT---NLGLTDRGLTN-LGLTDRGLTPEAYQS 546
LT + +T+ L +L LT L L L + L E +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----LLKYLDCRPQDLPREVLTT 325
Query: 547 GP---GIIGLSHASGMIFRNSNFFQ-NIDTL----------------RLLYTSL----DR 582
P II S + N+ N D L R ++ L
Sbjct: 326 NPRRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 583 SKLEYAT--VIWAPKSKSYV----------SLLE 604
+ + +IW KS V SL+E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 33.8 bits (78), Expect = 0.17
Identities = 73/401 (18%), Positives = 130/401 (32%), Gaps = 17/401 (4%)
Query: 143 LLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL-GLTDRGLTN 201
L LT++ + + + + + N + ++ L DR
Sbjct: 17 LRHSSNLTEMPVEAENVKSKTEYYNAWSEW-ERNAPPGNGEQREMAVSRLRDCLDRQAHE 75
Query: 202 LGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTN 261
L L + GL++L L +L + LT L + L +L + + L L L
Sbjct: 76 LELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 262 LGLTDRGLTNLG--LTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL----GLT 315
LG+++ L L L + + + L L L + + L L L
Sbjct: 136 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLP 195
Query: 316 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL----GLTDRGLTNLGLTDRGLTN 371
LT + + L L L ++ + L L L LT + + L
Sbjct: 196 F--LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP--FLTTIYADNNLLKT 251
Query: 372 LGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTN 431
L L L + D LT+L + LT L +++ + L L L + + +
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 311
Query: 432 LGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTN 491
L L L +++ L L L L + L + + L L + L
Sbjct: 312 LCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE 371
Query: 492 LGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL 532
+ +L + L + + L L + L
Sbjct: 372 FPDIPESVEDLRMNSH-LAEVPELPQNLKQLHVETNPLREF 411
Score = 29.6 bits (67), Expect = 3.5
Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 1/194 (0%)
Query: 249 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 308
LT + + L L L L + D LT+L + LT L +++ + L
Sbjct: 239 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 298
Query: 309 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 368
L L + + +L L L +++ L L L L + L + +
Sbjct: 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQN 358
Query: 369 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 428
L L + L + +L + L + + L L + L
Sbjct: 359 LKQLHVEYNPLREFPDIPESVEDLRMNSH-LAEVPELPQNLKQLHVETNPLREFPDIPES 417
Query: 429 LTNLGLTDRGLTNL 442
+ +L + + +
Sbjct: 418 VEDLRMNSERVVDP 431
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 30.3 bits (68), Expect = 2.0
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 1/154 (0%)
Query: 167 RGLTNLGLTDRGLTNL-GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 225
+ L L L++L +T L +T L +L L L D L+ L
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL 118
Query: 226 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 285
L +L + + LT L L + + LT L L L + + LT L
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL 178
Query: 286 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 319
L L ++ L +L + T+
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212
Score = 30.3 bits (68), Expect = 2.0
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 1/154 (0%)
Query: 227 RGLTNLGLTDRGLTNL-GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 285
+ L L L++L +T L +T L +L L L D L+ L
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL 118
Query: 286 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 345
L +L + + LT L L + + LT L L L + + LT L
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL 178
Query: 346 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 379
L L ++ L +L + T+
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212
Score = 30.3 bits (68), Expect = 2.0
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 1/154 (0%)
Query: 287 RGLTNLGLTDRGLTNL-GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 345
+ L L L++L +T L +T L +L L L D L+ L
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL 118
Query: 346 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 405
L +L + + LT L L + + LT L L L + + LT L
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL 178
Query: 406 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 439
L L ++ L +L + T+
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212
Score = 30.3 bits (68), Expect = 2.0
Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 1/154 (0%)
Query: 347 RGLTNLGLTDRGLTNL-GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 405
+ L L L++L +T L +T L +L L L D L+ L
Sbjct: 59 NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL 118
Query: 406 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLT 465
L +L + + LT L L + + LT L L L + + LT L
Sbjct: 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL 178
Query: 466 DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGL 499
L L ++ L +L + T+
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 29.1 bits (65), Expect = 3.8
Identities = 26/191 (13%), Positives = 45/191 (23%)
Query: 132 PNGMAHYSRSDLLTDRGLTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTN 191
P + + L + L L N + + + L N +N
Sbjct: 15 PEQLPLLTNCQLEDEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSN 74
Query: 192 LGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTN 251
+ +N+ + LT D L + D
Sbjct: 75 VRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNL 134
Query: 252 LGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTN 311
+ L + L L LT + L L + L + L+
Sbjct: 135 VHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSG 194
Query: 312 LGLTDRGLTNL 322
L +T L
Sbjct: 195 LXVTPEQAIYL 205
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 28.7 bits (64), Expect = 6.8
Identities = 44/332 (13%), Positives = 88/332 (26%), Gaps = 22/332 (6%)
Query: 149 LTKLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 208
LT LGL+ L L +L L + + +L + + + +L
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 209 LTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRG 268
L ++ + L + + L L + L ++ T +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT--FLSELTRGPTLLNVTLQHIETTWKC 265
Query: 269 LTNLGLT--DRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNL-GLT 325
L R + L + + +T T + L + ++
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERI-DREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 326 DRGLTNLGLTDRGLTNLGLTDRG-------LTNLGLTDRGLTNLGLTD----RGLTNLGL 374
+ + +++ T L T T+ + L L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 375 TDRGLTNLGLTDRGLTNL-GLTDRGLTNLGLTDRGLTNLGLTDRGLTNLGLTDRGLTNLG 433
GL N N+ L ++ L + L L+ LT
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-S 443
Query: 434 LTDR---GLTNLGLTDRGLTNLGLTDRGLTNL 462
+ + L L + + ++ L L
Sbjct: 444 VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQAL 475
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.141 0.404
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,745,108
Number of extensions: 581099
Number of successful extensions: 2319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1253
Number of HSP's successfully gapped: 120
Length of query: 605
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 506
Effective length of database: 3,937,614
Effective search space: 1992432684
Effective search space used: 1992432684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.1 bits)