BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9995
(595 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 23/155 (14%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSK 386
+VG PN GKS+ IN L + SV A PG TK Q +++ + + D PG++ + +FS+
Sbjct: 104 IVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKN-IFSE 162
Query: 387 ---ADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSE 443
A ++L G LP++++ D + E + I G + + F E
Sbjct: 163 DLAAKLLLVGSLPVERIEDQ-------------RIFERAFEIFARSI--GIESSFSEFFE 207
Query: 444 ELCNAYGYNRGFMTSNGQPDNPRSARYILKDFVNG 478
+ + RG + G PD R+ + G
Sbjct: 208 D----FARKRGLLKKGGVPDIERALMLFFTEVAQG 238
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 163 RQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY 222
RQ+ ++ + +V++ DAR P ++ KE +ILLNK D+ K
Sbjct: 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVDFSRKE------TIILLNKVDIADEKTTKK 66
Query: 223 WTKYFN 228
W ++F
Sbjct: 67 WVEFFK 72
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPG 376
+ VG NVGKSS +NAL N K VS TPGKT+ V+ + D PG
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPG 77
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 116/318 (36%), Gaps = 90/318 (28%)
Query: 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV 232
D++ ++VDAR P+ R +E +K +K ++LLNKAD W ++F + +
Sbjct: 25 DIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQWKEHFENQGI 80
Query: 233 AVAFFSATNIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQKVLENDLKIK 292
++ N GQ + N + +
Sbjct: 81 RSLSINSVN---------------------------------------GQGL--NQI-VP 98
Query: 293 SSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSA 352
+S ++L + F + + P + ++G PNVGKS+ IN L
Sbjct: 99 ASKEILQ--------EKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD 150
Query: 353 TPGKTKHFQTLFVDDELLLCDCPGLVMPSF-----------VFSKADMILN----GILPI 397
PG T Q + V EL L D PG++ P F + D I+N + +
Sbjct: 151 RPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGL 210
Query: 398 DQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMT 457
+ +H P L R+ L+ I P EL +A G RG +
Sbjct: 211 RFLEEHYPE-----RLKERYGLDEI----------------PEDIAELFDAIGEKRGCLM 249
Query: 458 SNGQPDNPRSARYILKDF 475
S G + ++ I++D
Sbjct: 250 SGGLINYDKTTEVIIRDI 267
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFV 383
I L G NVGKSS IN+L+N K ++ S+ PGKT+ ++DEL D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVS 85
Query: 384 FSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLEN 421
S+ + I R+ + AV + L RH N
Sbjct: 86 KSEREAWGRMIETYITTREELKAVVQIVDL--RHAPSN 121
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 311 HDVNIP--RMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-FQTLFV-- 365
H NIP + N +V+ L+G PNVGKSS +NA+L ++V VS G T+ T F
Sbjct: 182 HFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN 241
Query: 366 DDELLLCDCPGLVMPSFVFSKAD--MILNGILPIDQMRDHVPAV 407
E ++ D G+ V+ + +L + ID R V AV
Sbjct: 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAID--RSEVVAV 283
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+ +VG PNVGKS+ N + + V TPG T+
Sbjct: 25 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR 59
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLL-------CD 373
D + + +VG PNVGKS+ NA+LN ++ VS PG T+ VDDE+ + D
Sbjct: 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD----PVDDEVFIDGRKYVFVD 234
Query: 374 CPGL 377
GL
Sbjct: 235 TAGL 238
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
T+ +VG PNVGKS+ N L+ KK V G T+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTR 37
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 311 HDVNIP--RMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-FQTLFV-- 365
H NIP + N +V+ L+G PNVGKSS +NA L ++V VS G T+ T F
Sbjct: 162 HFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYN 221
Query: 366 DDELLLCDCPGLVMPSFVFSKAD--MILNGILPIDQMRDHVPAV 407
E ++ D G V+ + +L + ID R V AV
Sbjct: 222 QQEFVIVDTAGXRKKGKVYETTEKYSVLRALKAID--RSEVVAV 263
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+ +VG PNVGKS+ N + + V TPG T+
Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTR 39
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDDELLLCDCPG 376
+ + G N GKSS +N L N K ++ S TPG+T+ V D L D PG
Sbjct: 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG 81
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 286 ENDLKIKSSPKLLN-----REELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTIN 340
E D++ +S +L R E+ L S+ I ++ V T+ + G PN GKS+ +N
Sbjct: 195 EEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRI--VSEGVSTV-IAGKPNAGKSTLLN 251
Query: 341 ALLNAKKVSVSATPGKTK-HFQTLFVDDELL--LCDCPGL 377
LL ++ VS PG T+ + + F+ D+ + L D GL
Sbjct: 252 TLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKT-KHFQTLFVDD--ELLLCDCPGLVMP 380
+ +VG PNVGKS+ +N LL K +S P T K + + + +++ D PGL P
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDE----LLLCDCPGLVM 379
I +VG PNVGKS+ +N LL +K+S+++ +T + + + E + D PGL M
Sbjct: 8 IAIVGRPNVGKSTLLNKLL-GQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 299 NREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+E+LI F + MN MT+ ++G VGKSST+N+L+ + V VS P + +
Sbjct: 18 TQEKLIEFFGKLKQKD---MNS--MTVLVLGKGGVGKSSTVNSLIGEQVVRVS--PFQAE 70
Query: 359 HFQTLFVDDELL-----LCDCPGLVMPSFVFSKADMILNGIL 395
+ + V + + D PGLV +V +A ++ G L
Sbjct: 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 299 NREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+E+LI F + + + + MT+ ++G VGKSST+N+L+ + V VS P + +
Sbjct: 18 TQEKLIEFFG-----KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS--PFQAE 70
Query: 359 HFQTLFVDDELL-----LCDCPGLVMPSFVFSKADMILNGIL 395
+ + V + + D PGLV +V +A ++ G L
Sbjct: 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDE----LLLCDCPGLVM 379
I +VG PNVGKS+ +N LL +K+S+++ +T + + + E + D PGL M
Sbjct: 11 IAIVGRPNVGKSTLLNKLL-GQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 68
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 299 NREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+E+LI F + + + + MT+ ++G VGKSST+N+L+ + V VS P + +
Sbjct: 17 TQEKLIEFFG-----KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS--PFQAE 69
Query: 359 HFQTLFVDDELL-----LCDCPGLVMPSFVFSKADMILNGIL 395
+ + V + + D PGLV +V +A ++ G L
Sbjct: 70 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 111
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 299 NREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+E+LI F + + + + MT+ ++G VGKSST+N+L+ + V VS P + +
Sbjct: 18 TQEKLIEFFG-----KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS--PFQAE 70
Query: 359 HFQTLFVDDELL-----LCDCPGLVMPSFVFSKADMILNGIL 395
+ + V + + D PGLV +V +A ++ G L
Sbjct: 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDE---LLLCDCPGL 377
+VG PNVGKSS N LL + V+ PG T+ + V+ + LL D GL
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL 59
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+VG PNVGKS+ +N LLN + V+ PG T+
Sbjct: 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTR 279
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 34/49 (69%), Gaps = 4/49 (8%)
Query: 169 IERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR 217
IE++D+++ ++DA +PL ++ +R + E +KR ++++NK D++ +
Sbjct: 321 IEKADIVLFVLDASSPL----DEEDRKILERIKNKRYLVVINKVDVVEK 365
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD-----ELLLCDCPGLVM 379
+ +VG PNVGKS+ +N LL KVS+ + T + L V + +++ D PG+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 380 P 380
P
Sbjct: 71 P 71
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD-----ELLLCDCPGLVM 379
+ +VG PNVGKS+ +N LL KVS+ + T + L V + +++ D PG+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 380 P 380
P
Sbjct: 72 P 72
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELL--- 370
++P ++ ++ T+ + G+PNVGKS+ + AL AK +++ P T+ +D
Sbjct: 159 DLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQ 217
Query: 371 LCDCPGLV 378
+ D PGL+
Sbjct: 218 IIDTPGLL 225
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 315 IPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDEL---LL 371
+P +NP TI L G PNVGKSS +N + A V V + TK+ D +L +
Sbjct: 22 LPSINPHKKTIILSGAPNVGKSSFMNIVSRA-NVDVQSYSFTTKNLYVGHFDHKLNKYQI 80
Query: 372 CDCPGLVMPSF 382
D PGL+ +F
Sbjct: 81 IDTPGLLDRAF 91
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGL 377
T+ LVG PNVGK++ NAL ++ V PG T K + + E L+ D PG+
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPS 381
+ + +VG PNVGKSS +NA + + V+ PG T+ V+ +L++ P V+ +
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRD----VVESQLVVGGIPVQVLDT 279
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
Query: 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDE----- 368
N+ + + + +TI ++G VGKSST+N+++ + VS+S P +++ + + V
Sbjct: 31 NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSIS--PFQSEGPRPVMVSRSRAGFT 88
Query: 369 LLLCDCPGLVMPSFVFSKADMILNGI 394
L + D PGL+ ++ DM LN I
Sbjct: 89 LNIIDTPGLIEGGYI---NDMALNII 111
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 322 VMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDE--LLLCDCPGLV 378
+ +GLVGYPN GKSS + A+ A K++ + + + V +E L D PG++
Sbjct: 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 216
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVS 351
++ +G+VG PNVGKS+ NAL A ++ +
Sbjct: 1 MLAVGIVGLPNVGKSTLFNALTRANALAAN 30
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVS 351
+ +G+VG PNVGKS+ NAL A ++ +
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAAN 30
>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure
Length = 959
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 63 TAQLAGTEFTAEKLNITFVNPKSGVGLLSKE---EKELALQAHKEK----RELLKIPRRP 115
T L GT N+ F G G+L ++ + EL L K+K R L R P
Sbjct: 460 TCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSP 519
Query: 116 KWDKNTTAEQLQAMERDEFLQWRRELNLLQEEDGLVITPYEKNLDF 161
KN T + M+ +E + + R+ + +++ + E LD+
Sbjct: 520 SHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDY 565
>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 967
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 63 TAQLAGTEFTAEKLNITFVNPKSGVGLLSKE---EKELALQAHKEK----RELLKIPRRP 115
T L GT N+ F G G+L ++ + EL L K+K R L R P
Sbjct: 460 TCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSP 519
Query: 116 KWDKNTTAEQLQAMERDEFLQWRRELNLLQEEDGLVITPYEKNLDF 161
KN T + M+ +E + + R+ + +++ + E LD+
Sbjct: 520 SHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDY 565
>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|A Chain A, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 957
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 63 TAQLAGTEFTAEKLNITFVNPKSGVGLLSKE---EKELALQAHKEK----RELLKIPRRP 115
T L GT N+ F G G+L ++ + EL L K+K R L R P
Sbjct: 460 TCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSP 519
Query: 116 KWDKNTTAEQLQAMERDEFLQWRRELNLLQEEDGLVITPYEKNLDF 161
KN T + M+ +E + + R+ + +++ + E LD+
Sbjct: 520 SHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDY 565
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGLVM 379
+TIGL+G PN GK++ N L +++ V G T K Q D ++ L D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 380 PSFVFSKADM 389
+ + S+ +
Sbjct: 63 LTTISSQTSL 72
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGLVM 379
+TIGL+G PN GK++ N L +++ V G T K Q D ++ L D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 380 PSFVFSKADM 389
+ + S+ +
Sbjct: 63 LTTISSQTSL 72
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGLVM 379
+TIGL+G PN GK++ N L +++ V G T K Q D ++ L D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 380 PSFVFSKADM 389
+ + S+ +
Sbjct: 63 LTTISSQTSL 72
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDE----- 368
N+ + + + +TI + G VGKSST+N+++ + VS+S P +++ + + V
Sbjct: 31 NLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVVSIS--PFQSEGPRPVXVSRSRAGFT 88
Query: 369 LLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNML 410
L + D PGL+ ++ A I+ L +D+ D + V+ L
Sbjct: 89 LNIIDTPGLIEGGYINDXALNIIKSFL-LDKTIDVLLYVDRL 129
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 63 TAQLAGTEFTAEKLNITFVNPKSGVGLLSKE---EKELALQAHKEK----RELLKIPRRP 115
T L GT N+ F G G+L ++ + EL L K+K R L R P
Sbjct: 460 TCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRSP 519
Query: 116 KWDKNTTAEQLQAMERDEFLQWRRELNLLQEEDGLVITPYEKNLDF 161
KN T + M+ +E + + R+ + +++ + E LD+
Sbjct: 520 SHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDY 565
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 17/64 (26%)
Query: 325 IGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLF-------VDD--ELLLCDC 374
+GLVG+P+VGKS+ ++ + +AK K++ HF TL DD + D
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIA-------DYHFTTLVPNLGXVETDDGRSFVXADL 213
Query: 375 PGLV 378
PGL+
Sbjct: 214 PGLI 217
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAK 346
+ IG+VG PNVGKS+ N L N++
Sbjct: 23 LKIGIVGLPNVGKSTFFNVLTNSQ 46
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV--DDELLLCDCPGLVMP 380
+T+GL+G PN GK++ N L A++ + + + +F D ++ L D PG
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSL 63
Query: 381 SFVFSKADM 389
+ + S+ +
Sbjct: 64 TTISSQTSL 72
>pdb|3DA2|A Chain A, X-Ray Structure Of Human Carbonic Anhydrase 13 In Complex
With Inhibitor
pdb|3DA2|B Chain B, X-Ray Structure Of Human Carbonic Anhydrase 13 In Complex
With Inhibitor
Length = 262
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 418 VLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDF 475
+LE++ I++ QP F LC A G F+ SN +P P R + F
Sbjct: 205 LLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRKVRASF 262
>pdb|3CZV|A Chain A, Crystal Structure Of The Human Carbonic Anhydrase Xiii In
Complex With Acetazolamide
pdb|3CZV|B Chain B, Crystal Structure Of The Human Carbonic Anhydrase Xiii In
Complex With Acetazolamide
pdb|3D0N|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Xiii
pdb|3D0N|B Chain B, Crystal Structure Of Human Carbonic Anhydrase Xiii
Length = 264
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 418 VLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDF 475
+LE++ I++ QP F LC A G F+ SN +P P R + F
Sbjct: 206 LLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRKVRASF 263
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGL 377
I L+G PNVGKS+ NA L + V + PG T K + + ++ + D PG+
Sbjct: 6 IALIGNPNVGKSTIFNA-LTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGL 377
I L+G PNVGKS+ NA L + V + PG T K + + ++ + D PG+
Sbjct: 6 IALIGNPNVGKSTIFNA-LTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGL 377
I L+G PNVGKS+ NA L + V + PG T K + + ++ + D PG+
Sbjct: 7 IALIGNPNVGKSTIFNA-LTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPGL 377
I L+G PNVGKS+ NA L + V + PG T K + + ++ + D PG+
Sbjct: 10 IALIGNPNVGKSTIFNA-LTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV--DDELLLCDCPGL----- 377
I L+G PN GK+S N L+ V PG T ++ V + +L + D PG+
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 378 ------VMPSFVFS-KADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIM 426
V ++ S +AD ILN + + R+ ++ T +P + N+ ++
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVL 120
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV--DDELLLCDCPGL----- 377
I L+G PN GK+S N L+ V PG T ++ V + +L + D PG+
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 378 ------VMPSFVFS-KADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIM 426
V ++ S +AD ILN + + R+ ++ T +P + N+ ++
Sbjct: 65 YSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVL 120
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV--DDELLLCDCPGL----- 377
I L+G PN GK+S N L+ V PG T ++ V + +L + D PG+
Sbjct: 6 IALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 378 ------VMPSFVFS-KADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIM 426
V ++ S +AD ILN + + R+ ++ T +P + N+ ++
Sbjct: 65 YSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVL 120
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 296 KLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINAL--LNAKKVSVSAT 353
KL+ E I +FK + R N + +IG+VGY N GK+S N+L L K + T
Sbjct: 155 KLMKELESIKIFKEKSIESNKRNN--IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFT 212
Query: 354 PGKTKHFQTLFVDDELLLCDCPGLV 378
K + + +++L D G +
Sbjct: 213 TMSPKRYAIPINNRKIMLVDTVGFI 237
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 297 LLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLN-----AKKVSVS 351
L++ + I + K +N R DV +G NVGKS+ IN ++ ++ S
Sbjct: 140 LVSAAKGIGMAKVMEAINRYREGGDVYVVGCT---NVGKSTFINRIIEEATGKGNVITTS 196
Query: 352 ATPGKTKHFQTLFVDDELLLCDCPGLV 378
PG T + ++ L D PG++
Sbjct: 197 YFPGTTLDMIEIPLESGATLYDTPGII 223
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 323 MTIGLVGYPNVGKSSTINAL 342
M +G+ G P VGKS+TI AL
Sbjct: 58 MHVGITGVPGVGKSTTIEAL 77
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 327 LVGYPNVGKSSTINALL------NAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378
+VG NVGKS+ IN + ++ S PG T + +D+E L D PG++
Sbjct: 165 VVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGII 222
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
M + + G PN GKSS +NAL + V+ G T+
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 43
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
M + + G PN GKSS +NAL + V+ G T+
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 326 GLVGYPNVGKSSTINALLNA 345
G+VG PNVGKS+ NAL A
Sbjct: 6 GIVGLPNVGKSTLFNALTKA 25
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
++ + L G PNVGK+S NAL K+ V+ PG T
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVT 39
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 296 KLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINAL 342
KL+ E I +FK + R N + +IG+VGY N GK+S N+L
Sbjct: 155 KLMKELESIKIFKEKSIESNKRNN--IPSIGIVGYTNSGKTSLFNSL 199
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 296 KLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINAL 342
KL+ E I +FK + R N + +IG+VGY N GK+S N+L
Sbjct: 155 KLMKELESIKIFKEKSIESNKRNN--IPSIGIVGYTNSGKTSLFNSL 199
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
+ + L G PNVGK+S NAL K+ V+ PG T
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVT 39
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVDDELL-LCDCPGL 377
L+G PN GK++ NAL NA + V PG T +T + + L+ + D PG+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGV 58
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
++ + L G PNVGK+S NAL K+ V+ PG T
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVT 39
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
Query: 417 HVLENIYGIMITQPDEGEDPNRPPFSEELC---NAYGYNRG----FMTSNGQP 462
H+ + +YG I +P EG RPP +E+ N Y + G F + NG P
Sbjct: 141 HIAKGLYGGFIVEPKEG----RPPADDEMVMVMNGYNTDGGDDNEFYSVNGLP 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,327,507
Number of Sequences: 62578
Number of extensions: 672845
Number of successful extensions: 1880
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1825
Number of HSP's gapped (non-prelim): 73
length of query: 595
length of database: 14,973,337
effective HSP length: 104
effective length of query: 491
effective length of database: 8,465,225
effective search space: 4156425475
effective search space used: 4156425475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)