Query psy9995
Match_columns 595
No_of_seqs 581 out of 3261
Neff 6.4
Searched_HMMs 46136
Date Sat Aug 17 00:56:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1424|consensus 100.0 5E-113 1E-117 907.0 35.8 548 1-583 1-562 (562)
2 KOG2423|consensus 100.0 4E-47 8.6E-52 391.8 22.4 369 44-491 78-464 (572)
3 KOG2484|consensus 100.0 3.1E-46 6.8E-51 387.9 21.8 273 159-488 134-406 (435)
4 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.5E-40 3.2E-45 344.7 27.0 260 159-490 12-285 (287)
5 COG1161 Predicted GTPases [Gen 100.0 1.2E-40 2.7E-45 350.2 23.7 272 157-488 20-298 (322)
6 TIGR03596 GTPase_YlqF ribosome 100.0 1.2E-39 2.5E-44 336.1 26.8 255 159-484 9-274 (276)
7 COG1160 Predicted GTPases [Gen 100.0 8.2E-30 1.8E-34 271.7 17.8 217 107-381 4-240 (444)
8 cd01858 NGP_1 NGP-1. Autoanti 100.0 1.2E-28 2.6E-33 232.9 17.3 156 164-377 1-157 (157)
9 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 1E-27 2.3E-32 222.8 17.0 141 161-380 1-141 (141)
10 cd04178 Nucleostemin_like Nucl 99.9 4.4E-27 9.6E-32 226.6 17.3 172 173-377 1-172 (172)
11 cd01856 YlqF YlqF. Proteins o 99.9 1.7E-24 3.7E-29 207.6 18.5 161 159-378 7-171 (171)
12 cd01859 MJ1464 MJ1464. This f 99.9 3.1E-24 6.6E-29 202.1 17.6 155 161-377 1-156 (156)
13 cd01849 YlqF_related_GTPase Yl 99.9 4.2E-24 9.1E-29 201.6 16.4 149 173-377 1-155 (155)
14 KOG2485|consensus 99.9 3.2E-24 7E-29 218.5 14.5 256 159-481 34-316 (335)
15 PRK12289 GTPase RsgA; Reviewed 99.9 2.1E-23 4.6E-28 221.6 16.5 163 148-382 69-239 (352)
16 TIGR03594 GTPase_EngA ribosome 99.9 2.3E-23 5E-28 226.9 16.8 212 109-380 2-233 (429)
17 PRK03003 GTP-binding protein D 99.9 1.2E-22 2.5E-27 224.6 16.5 216 106-379 38-271 (472)
18 cd01855 YqeH YqeH. YqeH is an 99.9 1.2E-22 2.5E-27 197.8 14.3 156 155-377 18-190 (190)
19 PRK00093 GTP-binding protein D 99.9 2.6E-22 5.6E-27 219.3 17.8 214 108-381 3-235 (435)
20 PRK09518 bifunctional cytidyla 99.9 6.4E-22 1.4E-26 228.7 16.8 216 108-379 277-510 (712)
21 TIGR00157 ribosome small subun 99.9 9.5E-22 2.1E-26 199.8 15.1 163 147-382 15-186 (245)
22 PRK13796 GTPase YqeH; Provisio 99.8 1.5E-20 3.3E-25 201.3 17.0 148 165-380 62-223 (365)
23 PRK12288 GTPase RsgA; Reviewed 99.8 1.3E-20 2.8E-25 200.2 15.1 162 149-380 93-270 (347)
24 TIGR03597 GTPase_YqeH ribosome 99.8 2.1E-20 4.7E-25 199.9 16.1 153 160-380 52-217 (360)
25 cd01854 YjeQ_engC YjeQ/EngC. 99.8 2.1E-20 4.6E-25 194.1 13.8 165 148-381 50-227 (287)
26 PRK00098 GTPase RsgA; Reviewed 99.8 6.3E-20 1.4E-24 191.6 13.8 163 148-379 53-228 (298)
27 COG1162 Predicted GTPases [Gen 99.8 6E-18 1.3E-22 174.1 15.2 171 139-381 48-230 (301)
28 PRK01889 GTPase RsgA; Reviewed 99.7 1.1E-16 2.4E-21 171.0 9.2 166 147-382 81-262 (356)
29 COG0486 ThdF Predicted GTPase 99.6 4.2E-15 9E-20 159.9 9.3 134 105-244 216-363 (454)
30 COG1159 Era GTPase [General fu 99.5 6.7E-14 1.5E-18 143.3 11.4 138 105-244 5-159 (298)
31 COG1160 Predicted GTPases [Gen 99.4 4.5E-13 9.8E-18 144.0 7.0 136 107-244 179-338 (444)
32 PF03193 DUF258: Protein of un 99.4 2.1E-12 4.6E-17 123.0 9.2 94 221-382 2-102 (161)
33 PRK11058 GTPase HflX; Provisio 99.4 8.5E-13 1.8E-17 144.3 6.8 194 172-378 42-256 (426)
34 TIGR03156 GTP_HflX GTP-binding 99.3 1.6E-12 3.5E-17 138.9 7.2 193 173-378 35-248 (351)
35 TIGR00436 era GTP-binding prot 99.3 8.5E-12 1.8E-16 128.5 11.7 134 108-244 2-151 (270)
36 COG1159 Era GTPase [General fu 99.2 1E-11 2.2E-16 127.4 5.7 59 323-381 7-68 (298)
37 PF02421 FeoB_N: Ferrous iron 99.2 1.7E-11 3.8E-16 116.4 6.8 56 323-379 1-59 (156)
38 PRK15494 era GTPase Era; Provi 99.2 8.2E-11 1.8E-15 125.3 11.2 136 106-244 52-203 (339)
39 PRK00089 era GTPase Era; Revie 99.2 1.7E-10 3.6E-15 119.9 12.2 137 106-244 5-158 (292)
40 COG0218 Predicted GTPase [Gene 99.2 3.6E-11 7.7E-16 117.4 6.4 61 321-381 23-84 (200)
41 cd01894 EngA1 EngA1 subfamily. 99.2 3.4E-10 7.3E-15 104.5 12.0 128 112-244 3-145 (157)
42 PF01926 MMR_HSR1: 50S ribosom 99.1 7.7E-11 1.7E-15 105.3 6.1 58 324-381 1-61 (116)
43 COG0486 ThdF Predicted GTPase 99.1 7.4E-11 1.6E-15 127.4 7.0 60 321-380 216-278 (454)
44 TIGR03156 GTP_HflX GTP-binding 99.1 4E-10 8.7E-15 120.5 12.5 133 107-244 190-339 (351)
45 COG2262 HflX GTPases [General 99.1 1.3E-10 2.8E-15 123.7 8.4 194 172-378 37-251 (411)
46 PF02421 FeoB_N: Ferrous iron 99.1 6.3E-12 1.4E-16 119.4 -1.5 128 109-244 3-148 (156)
47 KOG1191|consensus 99.1 1E-10 2.2E-15 126.2 5.9 140 105-244 267-437 (531)
48 cd04171 SelB SelB subfamily. 99.1 1.5E-09 3.3E-14 101.0 11.9 127 109-244 3-153 (164)
49 PRK00093 GTP-binding protein D 99.1 5.4E-10 1.2E-14 122.4 10.1 136 107-244 174-331 (435)
50 PRK03003 GTP-binding protein D 99.0 1.2E-09 2.6E-14 121.3 12.5 136 107-244 212-369 (472)
51 cd01898 Obg Obg subfamily. Th 99.0 4E-10 8.7E-15 106.1 7.3 135 109-244 3-158 (170)
52 PRK05291 trmE tRNA modificatio 99.0 9.2E-10 2E-14 121.5 10.4 129 106-244 215-357 (449)
53 cd04163 Era Era subfamily. Er 99.0 2.4E-09 5.2E-14 98.8 11.6 136 107-244 4-156 (168)
54 PRK12299 obgE GTPase CgtA; Rev 99.0 1.1E-09 2.4E-14 116.4 10.6 137 105-244 157-315 (335)
55 COG1084 Predicted GTPase [Gene 99.0 4.8E-10 1E-14 116.3 7.0 67 316-383 162-231 (346)
56 cd01878 HflX HflX subfamily. 99.0 3.7E-09 8E-14 103.6 12.9 136 106-244 41-192 (204)
57 TIGR03594 GTPase_EngA ribosome 99.0 1.1E-09 2.3E-14 119.8 9.7 135 108-244 174-331 (429)
58 PRK12296 obgE GTPase CgtA; Rev 99.0 1.6E-09 3.5E-14 120.1 10.7 139 105-244 158-327 (500)
59 cd01897 NOG NOG1 is a nucleola 99.0 3E-09 6.6E-14 100.0 10.6 135 109-244 3-155 (168)
60 cd04164 trmE TrmE (MnmE, ThdF, 99.0 1.8E-09 3.8E-14 99.5 8.5 127 109-244 4-144 (157)
61 PRK15467 ethanolamine utilizat 99.0 1.6E-09 3.6E-14 102.7 8.4 126 108-244 3-134 (158)
62 TIGR02528 EutP ethanolamine ut 99.0 1.3E-09 2.9E-14 100.0 7.5 124 109-244 3-132 (142)
63 cd01884 EF_Tu EF-Tu subfamily. 99.0 4.3E-09 9.3E-14 103.6 11.4 100 135-244 60-170 (195)
64 TIGR02729 Obg_CgtA Obg family 99.0 3.4E-09 7.3E-14 112.5 11.3 138 106-244 157-316 (329)
65 cd01881 Obg_like The Obg-like 98.9 1.5E-09 3.3E-14 102.4 7.4 132 112-244 2-164 (176)
66 cd01895 EngA2 EngA2 subfamily. 98.9 5E-09 1.1E-13 97.8 10.6 134 109-244 5-162 (174)
67 COG1084 Predicted GTPase [Gene 98.9 2.4E-09 5.3E-14 111.1 8.6 136 107-242 169-321 (346)
68 PRK12298 obgE GTPase CgtA; Rev 98.9 4.2E-09 9.2E-14 114.1 10.9 137 107-244 160-320 (390)
69 PRK11058 GTPase HflX; Provisio 98.9 6.9E-09 1.5E-13 113.7 12.1 134 107-244 198-349 (426)
70 TIGR00450 mnmE_trmE_thdF tRNA 98.9 2.5E-09 5.5E-14 117.7 8.6 130 105-241 202-345 (442)
71 cd01889 SelB_euk SelB subfamil 98.9 1.7E-08 3.8E-13 98.1 13.3 126 109-244 3-173 (192)
72 cd04166 CysN_ATPS CysN_ATPS su 98.9 6.7E-09 1.5E-13 102.8 10.5 128 109-245 2-182 (208)
73 PRK12297 obgE GTPase CgtA; Rev 98.9 5.4E-09 1.2E-13 114.2 10.7 135 106-244 158-314 (424)
74 TIGR00436 era GTP-binding prot 98.9 1.9E-09 4.2E-14 111.0 6.1 57 324-380 2-61 (270)
75 PRK09518 bifunctional cytidyla 98.9 6.7E-09 1.4E-13 120.9 11.2 136 107-244 451-608 (712)
76 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 1.7E-09 3.6E-14 106.0 5.1 59 323-381 1-63 (196)
77 cd01879 FeoB Ferrous iron tran 98.9 5.1E-09 1.1E-13 97.0 7.9 127 113-244 3-144 (158)
78 KOG1191|consensus 98.9 1.7E-09 3.6E-14 117.0 4.8 58 322-379 268-328 (531)
79 COG2262 HflX GTPases [General 98.9 7.7E-09 1.7E-13 110.3 9.7 134 108-244 194-343 (411)
80 cd00881 GTP_translation_factor 98.9 1.5E-08 3.3E-13 96.5 10.6 125 110-244 3-174 (189)
81 PF10662 PduV-EutP: Ethanolami 98.8 1.6E-08 3.5E-13 94.5 9.2 122 111-244 6-133 (143)
82 TIGR03598 GTPase_YsxC ribosome 98.8 5.8E-09 1.3E-13 100.4 6.4 61 320-380 16-77 (179)
83 KOG1423|consensus 98.8 4.4E-09 9.6E-14 108.0 5.4 61 321-381 71-134 (379)
84 PRK12298 obgE GTPase CgtA; Rev 98.8 4.6E-09 1E-13 113.9 5.4 57 324-381 161-221 (390)
85 TIGR03598 GTPase_YsxC ribosome 98.8 2.1E-08 4.6E-13 96.4 9.3 138 104-244 16-177 (179)
86 cd01853 Toc34_like Toc34-like 98.8 1E-08 2.2E-13 104.8 7.4 61 320-380 29-92 (249)
87 PRK00454 engB GTP-binding prot 98.8 8.1E-09 1.7E-13 99.9 6.0 60 321-380 23-83 (196)
88 KOG0057|consensus 98.8 1.3E-09 2.9E-14 119.2 0.5 129 322-486 378-514 (591)
89 PTZ00258 GTP-binding protein; 98.8 7.2E-09 1.6E-13 111.8 6.1 60 321-381 20-99 (390)
90 TIGR00991 3a0901s02IAP34 GTP-b 98.8 1E-08 2.2E-13 107.2 7.1 76 300-380 21-99 (313)
91 KOG0058|consensus 98.8 1.6E-09 3.5E-14 122.0 0.7 120 323-474 495-622 (716)
92 cd01891 TypA_BipA TypA (tyrosi 98.8 8.1E-08 1.8E-12 93.6 12.5 126 109-244 5-169 (194)
93 PRK09601 GTP-binding protein Y 98.8 7.3E-09 1.6E-13 110.7 5.5 57 323-380 3-79 (364)
94 cd01890 LepA LepA subfamily. 98.7 7.2E-08 1.6E-12 91.7 11.6 125 110-244 4-164 (179)
95 PRK12317 elongation factor 1-a 98.7 6.3E-08 1.4E-12 106.2 11.9 103 134-245 78-193 (425)
96 CHL00071 tufA elongation facto 98.7 5.1E-08 1.1E-12 106.5 11.2 126 109-244 15-180 (409)
97 PF00009 GTP_EFTU: Elongation 98.7 1.4E-07 3.1E-12 91.6 11.9 99 136-244 66-174 (188)
98 cd01900 YchF YchF subfamily. 98.7 1.1E-08 2.3E-13 105.9 4.2 55 325-380 1-75 (274)
99 PRK05291 trmE tRNA modificatio 98.7 2E-08 4.3E-13 111.0 6.5 59 321-379 214-275 (449)
100 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 4.2E-08 9.1E-13 96.0 7.7 132 109-241 3-163 (196)
101 PRK00454 engB GTP-binding prot 98.7 1.4E-07 3.1E-12 91.2 11.0 137 105-244 23-181 (196)
102 PRK15494 era GTPase Era; Provi 98.7 2.6E-08 5.7E-13 106.2 6.3 60 321-380 51-113 (339)
103 cd00880 Era_like Era (E. coli 98.7 1.3E-07 2.8E-12 85.8 9.7 129 113-244 3-151 (163)
104 PRK04213 GTP-binding protein; 98.7 2.7E-08 5.8E-13 97.1 5.4 56 321-378 8-63 (201)
105 cd01888 eIF2_gamma eIF2-gamma 98.6 2.7E-07 5.8E-12 91.1 12.4 96 140-244 83-186 (203)
106 PRK00089 era GTPase Era; Revie 98.6 3.4E-08 7.3E-13 102.7 6.2 59 323-381 6-67 (292)
107 KOG1423|consensus 98.6 1.6E-07 3.5E-12 96.7 10.8 138 106-244 72-258 (379)
108 PRK09866 hypothetical protein; 98.6 4E-07 8.7E-12 102.5 14.3 101 141-244 231-340 (741)
109 TIGR00450 mnmE_trmE_thdF tRNA 98.6 3.9E-08 8.4E-13 108.4 6.3 59 321-379 202-263 (442)
110 cd04142 RRP22 RRP22 subfamily. 98.6 1.1E-07 2.5E-12 93.5 8.9 136 109-244 3-161 (198)
111 KOG0055|consensus 98.6 1E-08 2.2E-13 121.7 1.2 126 322-482 1016-1149(1228)
112 cd01886 EF-G Elongation factor 98.6 1.5E-07 3.2E-12 97.4 9.2 123 110-242 3-160 (270)
113 cd04160 Arfrp1 Arfrp1 subfamil 98.6 1.6E-07 3.4E-12 88.2 8.5 125 110-244 3-156 (167)
114 COG1132 MdlB ABC-type multidru 98.6 9.1E-09 2E-13 116.6 0.1 135 323-492 356-499 (567)
115 cd01883 EF1_alpha Eukaryotic e 98.6 4.2E-07 9E-12 90.8 11.8 104 133-245 70-193 (219)
116 PF01926 MMR_HSR1: 50S ribosom 98.6 3.5E-08 7.6E-13 88.1 3.6 98 111-211 4-116 (116)
117 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 4.5E-07 9.8E-12 84.9 11.2 126 109-244 3-153 (168)
118 cd04164 trmE TrmE (MnmE, ThdF, 98.6 8E-08 1.7E-12 88.5 5.9 56 323-378 2-60 (157)
119 TIGR02034 CysN sulfate adenyly 98.6 6.3E-07 1.4E-11 97.9 13.8 104 133-245 73-185 (406)
120 PRK12299 obgE GTPase CgtA; Rev 98.6 5.2E-08 1.1E-12 103.7 5.1 56 323-379 159-218 (335)
121 PRK12297 obgE GTPase CgtA; Rev 98.5 6.3E-08 1.4E-12 106.0 5.3 55 324-379 160-218 (424)
122 PRK12296 obgE GTPase CgtA; Rev 98.5 6.7E-08 1.4E-12 107.4 5.2 56 323-379 160-218 (500)
123 PRK12735 elongation factor Tu; 98.5 3.9E-07 8.4E-12 99.2 10.9 126 109-244 15-180 (396)
124 PRK04213 GTP-binding protein; 98.5 2.9E-07 6.2E-12 89.9 8.9 133 107-244 10-179 (201)
125 PRK05506 bifunctional sulfate 98.5 7.2E-07 1.6E-11 102.7 13.4 105 133-246 97-210 (632)
126 cd01876 YihA_EngB The YihA (En 98.5 1.3E-07 2.7E-12 87.7 5.8 56 325-380 2-58 (170)
127 PRK05124 cysN sulfate adenylyl 98.5 1.1E-06 2.5E-11 97.7 14.2 104 133-245 100-213 (474)
128 PRK10512 selenocysteinyl-tRNA- 98.5 1E-06 2.2E-11 100.9 13.9 124 111-244 5-153 (614)
129 cd01898 Obg Obg subfamily. Th 98.5 8.8E-08 1.9E-12 90.1 4.4 54 324-378 2-59 (170)
130 cd01876 YihA_EngB The YihA (En 98.5 1.1E-06 2.3E-11 81.4 11.4 131 111-244 4-158 (170)
131 PLN03127 Elongation factor Tu; 98.5 5.5E-07 1.2E-11 99.5 10.9 98 135-242 119-227 (447)
132 cd01895 EngA2 EngA2 subfamily. 98.5 1.5E-07 3.3E-12 87.8 5.6 59 322-380 2-63 (174)
133 cd04165 GTPBP1_like GTPBP1-lik 98.5 1.3E-06 2.8E-11 88.0 12.4 77 135-221 79-157 (224)
134 PRK12736 elongation factor Tu; 98.5 7.4E-07 1.6E-11 97.0 11.5 97 137-243 72-179 (394)
135 cd01894 EngA1 EngA1 subfamily. 98.5 1.2E-07 2.6E-12 87.5 4.5 53 326-378 1-56 (157)
136 TIGR00437 feoB ferrous iron tr 98.5 1.7E-07 3.7E-12 106.8 6.8 128 113-245 1-143 (591)
137 cd01897 NOG NOG1 is a nucleola 98.5 1.4E-07 3E-12 88.8 5.0 54 324-378 2-58 (168)
138 cd04151 Arl1 Arl1 subfamily. 98.5 2.1E-07 4.6E-12 87.1 6.2 126 110-244 3-147 (158)
139 cd04124 RabL2 RabL2 subfamily. 98.5 4.3E-07 9.2E-12 85.6 8.2 123 110-244 4-145 (161)
140 cd01879 FeoB Ferrous iron tran 98.5 8.8E-08 1.9E-12 88.7 3.4 51 327-378 1-54 (158)
141 KOG1489|consensus 98.5 5.6E-07 1.2E-11 93.2 9.5 132 109-244 199-354 (366)
142 cd04163 Era Era subfamily. Er 98.5 2.3E-07 5.1E-12 85.5 6.2 59 322-380 3-64 (168)
143 cd04157 Arl6 Arl6 subfamily. 98.5 3.7E-07 8.1E-12 85.0 7.6 126 111-244 4-151 (162)
144 TIGR00485 EF-Tu translation el 98.5 6.5E-07 1.4E-11 97.4 10.6 98 136-243 71-179 (394)
145 cd01896 DRG The developmentall 98.5 3.8E-07 8.3E-12 92.2 8.2 76 109-185 3-91 (233)
146 PRK00049 elongation factor Tu; 98.5 6E-07 1.3E-11 97.8 10.2 99 136-244 71-180 (396)
147 PLN03126 Elongation factor Tu; 98.5 1E-06 2.3E-11 98.0 12.2 127 108-244 83-249 (478)
148 PRK09554 feoB ferrous iron tra 98.5 2E-07 4.3E-12 109.0 6.7 132 108-244 5-155 (772)
149 cd01866 Rab2 Rab2 subfamily. 98.5 3.5E-07 7.5E-12 86.7 7.2 127 108-244 6-153 (168)
150 TIGR00993 3a0901s04IAP86 chlor 98.5 2.1E-07 4.6E-12 104.9 6.4 60 322-381 118-180 (763)
151 smart00175 RAB Rab subfamily o 98.5 5.1E-07 1.1E-11 84.1 8.0 126 109-244 3-149 (164)
152 TIGR00475 selB selenocysteine- 98.4 8.9E-07 1.9E-11 100.9 11.4 127 110-246 4-155 (581)
153 KOG1490|consensus 98.4 1.5E-07 3.3E-12 102.0 4.4 81 301-384 149-232 (620)
154 KOG0055|consensus 98.4 7.5E-08 1.6E-12 114.5 2.1 135 322-491 379-522 (1228)
155 TIGR02729 Obg_CgtA Obg family 98.4 1.8E-07 3.9E-12 99.4 4.6 56 323-379 158-217 (329)
156 cd04154 Arl2 Arl2 subfamily. 98.4 3.1E-07 6.8E-12 87.4 5.9 131 106-244 14-162 (173)
157 cd01878 HflX HflX subfamily. 98.4 2.2E-07 4.8E-12 90.9 4.9 59 320-379 39-101 (204)
158 COG0370 FeoB Fe2+ transport sy 98.4 5.3E-07 1.2E-11 101.7 8.4 55 323-378 4-61 (653)
159 TIGR02868 CydC thiol reductant 98.4 3.9E-08 8.5E-13 110.5 -0.6 134 323-492 362-504 (529)
160 PRK00007 elongation factor G; 98.4 8.3E-07 1.8E-11 103.2 10.3 101 108-218 12-143 (693)
161 PTZ00265 multidrug resistance 98.4 4.4E-08 9.4E-13 121.8 -0.4 152 323-492 1195-1392(1466)
162 cd04119 RJL RJL (RabJ-Like) su 98.4 6.1E-07 1.3E-11 83.6 7.5 126 109-244 3-154 (168)
163 cd04169 RF3 RF3 subfamily. Pe 98.4 1.4E-06 2.9E-11 90.1 10.7 74 134-217 65-138 (267)
164 COG1163 DRG Predicted GTPase [ 98.4 2.1E-07 4.6E-12 96.6 4.3 61 320-381 61-124 (365)
165 TIGR01393 lepA GTP-binding pro 98.4 3.6E-06 7.7E-11 96.2 14.2 95 140-244 70-167 (595)
166 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.4 7.6E-07 1.7E-11 85.2 7.5 130 107-244 16-163 (174)
167 PF04548 AIG1: AIG1 family; I 98.4 2.5E-07 5.5E-12 92.1 4.2 60 323-382 1-64 (212)
168 cd04145 M_R_Ras_like M-Ras/R-R 98.4 1.1E-06 2.4E-11 82.0 8.1 127 108-244 4-151 (164)
169 PRK09602 translation-associate 98.4 3.3E-07 7E-12 99.7 5.2 57 323-380 2-85 (396)
170 cd04159 Arl10_like Arl10-like 98.4 1.5E-06 3.3E-11 79.6 9.0 125 110-244 3-148 (159)
171 TIGR00484 EF-G translation elo 98.4 1.5E-06 3.3E-11 100.9 11.0 100 133-242 68-171 (689)
172 PTZ00327 eukaryotic translatio 98.4 9.2E-06 2E-10 90.0 16.4 96 140-244 117-220 (460)
173 cd04139 RalA_RalB RalA/RalB su 98.4 9E-07 2E-11 82.3 7.1 128 109-244 3-149 (164)
174 TIGR00483 EF-1_alpha translati 98.4 2.3E-06 4.9E-11 94.0 11.3 104 133-245 78-195 (426)
175 PRK12739 elongation factor G; 98.3 1.1E-06 2.3E-11 102.2 9.1 75 133-217 66-140 (691)
176 TIGR00231 small_GTP small GTP- 98.3 6.3E-07 1.4E-11 81.3 5.7 55 323-378 2-61 (161)
177 PRK05433 GTP-binding protein L 98.3 5.5E-06 1.2E-10 94.7 14.5 96 139-244 73-171 (600)
178 cd00154 Rab Rab family. Rab G 98.3 1.6E-06 3.4E-11 79.3 8.3 126 109-244 3-149 (159)
179 cd01868 Rab11_like Rab11-like. 98.3 1.4E-06 3E-11 81.8 8.0 127 108-244 5-152 (165)
180 cd01861 Rab6 Rab6 subfamily. 98.3 1.1E-06 2.3E-11 81.9 7.2 126 109-244 3-149 (161)
181 cd01862 Rab7 Rab7 subfamily. 98.3 1.3E-06 2.8E-11 82.1 7.7 128 109-244 3-154 (172)
182 cd01882 BMS1 Bms1. Bms1 is an 98.3 2.2E-06 4.8E-11 86.2 9.7 122 109-243 42-182 (225)
183 COG0218 Predicted GTPase [Gene 98.3 2.5E-06 5.5E-11 83.7 9.8 136 105-244 23-184 (200)
184 TIGR03680 eif2g_arch translati 98.3 1.2E-05 2.6E-10 87.9 16.2 96 140-244 80-183 (406)
185 cd04149 Arf6 Arf6 subfamily. 98.3 1.2E-06 2.5E-11 83.7 7.2 127 108-244 11-157 (168)
186 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.3 1.1E-06 2.3E-11 82.8 6.9 123 109-244 5-151 (166)
187 PRK09554 feoB ferrous iron tra 98.3 5.3E-07 1.2E-11 105.5 5.8 55 323-378 4-61 (772)
188 cd04168 TetM_like Tet(M)-like 98.3 2.4E-06 5.3E-11 86.7 9.9 85 133-227 57-144 (237)
189 PRK11174 cysteine/glutathione 98.3 1.2E-07 2.7E-12 107.8 0.3 137 323-495 377-522 (588)
190 cd01863 Rab18 Rab18 subfamily. 98.3 1.4E-06 3.1E-11 81.3 7.4 126 109-244 3-149 (161)
191 PRK04000 translation initiatio 98.3 1.1E-05 2.4E-10 88.4 15.4 96 140-244 85-188 (411)
192 cd01881 Obg_like The Obg-like 98.3 3.3E-07 7.2E-12 86.4 3.1 51 327-378 1-55 (176)
193 cd01896 DRG The developmentall 98.3 6.6E-07 1.4E-11 90.5 5.3 55 324-379 2-59 (233)
194 cd04113 Rab4 Rab4 subfamily. 98.3 2.1E-06 4.6E-11 80.2 8.3 126 109-244 3-149 (161)
195 cd01867 Rab8_Rab10_Rab13_like 98.3 2E-06 4.3E-11 81.3 8.1 127 108-244 5-152 (167)
196 KOG0056|consensus 98.3 1.3E-07 2.9E-12 102.3 -0.4 121 322-474 564-692 (790)
197 TIGR01394 TypA_BipA GTP-bindin 98.3 3.2E-06 6.8E-11 96.5 10.6 102 133-244 57-168 (594)
198 cd04138 H_N_K_Ras_like H-Ras/N 98.3 2.3E-06 5.1E-11 79.2 7.8 126 109-244 4-149 (162)
199 cd04156 ARLTS1 ARLTS1 subfamil 98.3 2.4E-06 5.1E-11 79.6 7.8 127 110-244 3-149 (160)
200 cd04171 SelB SelB subfamily. 98.3 9.6E-07 2.1E-11 82.1 5.1 56 323-378 1-62 (164)
201 cd04123 Rab21 Rab21 subfamily. 98.3 2.9E-06 6.3E-11 78.5 8.3 125 109-244 3-149 (162)
202 smart00178 SAR Sar1p-like memb 98.3 1.5E-06 3.3E-11 84.1 6.4 130 107-244 18-172 (184)
203 cd00879 Sar1 Sar1 subfamily. 98.3 1.8E-06 3.9E-11 83.2 6.8 131 106-244 19-178 (190)
204 COG2274 SunT ABC-type bacterio 98.2 1.8E-07 3.9E-12 108.2 -0.3 121 323-475 500-628 (709)
205 cd04101 RabL4 RabL4 (Rab-like4 98.2 4.1E-06 8.8E-11 78.4 8.9 126 109-244 3-151 (164)
206 cd01864 Rab19 Rab19 subfamily. 98.2 3.8E-06 8.3E-11 79.0 8.6 126 109-244 6-153 (165)
207 cd04127 Rab27A Rab27a subfamil 98.2 2.8E-06 6.1E-11 81.0 7.4 127 108-244 6-164 (180)
208 cd01860 Rab5_related Rab5-rela 98.2 3.1E-06 6.8E-11 78.9 7.6 128 109-244 4-150 (163)
209 cd01865 Rab3 Rab3 subfamily. 98.2 2.8E-06 6.1E-11 80.1 7.3 126 109-244 4-150 (165)
210 cd00878 Arf_Arl Arf (ADP-ribos 98.2 2.3E-06 5E-11 79.7 6.6 127 110-244 3-147 (158)
211 cd01893 Miro1 Miro1 subfamily. 98.2 2.8E-06 6.1E-11 80.3 7.3 126 110-244 4-151 (166)
212 cd04106 Rab23_lke Rab23-like s 98.2 2.5E-06 5.3E-11 79.6 6.7 126 109-244 3-150 (162)
213 TIGR03797 NHPM_micro_ABC2 NHPM 98.2 2.9E-07 6.2E-12 106.9 0.2 137 323-495 480-625 (686)
214 cd04112 Rab26 Rab26 subfamily. 98.2 3.7E-06 7.9E-11 81.8 7.9 126 109-244 3-150 (191)
215 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 1.3E-06 2.8E-11 81.8 4.6 54 324-378 2-61 (168)
216 cd04144 Ras2 Ras2 subfamily. 98.2 6.4E-06 1.4E-10 80.0 9.6 122 110-244 3-150 (190)
217 cd04107 Rab32_Rab38 Rab38/Rab3 98.2 3E-06 6.6E-11 83.0 7.0 125 110-244 4-155 (201)
218 cd04158 ARD1 ARD1 subfamily. 98.2 2.8E-06 6.1E-11 80.8 6.5 124 111-244 4-148 (169)
219 cd04122 Rab14 Rab14 subfamily. 98.2 4.4E-06 9.6E-11 78.7 7.8 123 109-244 5-151 (166)
220 COG0370 FeoB Fe2+ transport sy 98.2 1.3E-06 2.7E-11 98.7 4.7 130 109-244 6-151 (653)
221 COG4917 EutP Ethanolamine util 98.2 1.1E-05 2.4E-10 73.4 9.6 126 108-244 3-133 (148)
222 smart00173 RAS Ras subfamily o 98.2 5E-06 1.1E-10 77.8 7.9 126 109-244 3-149 (164)
223 cd04140 ARHI_like ARHI subfami 98.2 5.8E-06 1.3E-10 78.0 8.3 128 109-244 4-152 (165)
224 cd04136 Rap_like Rap-like subf 98.2 4.8E-06 1E-10 77.6 7.6 126 109-244 4-150 (163)
225 cd04170 EF-G_bact Elongation f 98.2 1.1E-05 2.4E-10 83.0 10.8 74 134-217 58-131 (268)
226 cd01899 Ygr210 Ygr210 subfamil 98.2 1.4E-06 3E-11 92.2 4.2 55 325-380 1-82 (318)
227 cd04118 Rab24 Rab24 subfamily. 98.2 4.3E-06 9.4E-11 80.9 7.4 126 109-244 3-153 (193)
228 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.2 4.1E-06 8.9E-11 80.9 7.1 125 109-244 6-157 (183)
229 cd01885 EF2 EF2 (for archaea a 98.2 1.1E-05 2.3E-10 81.3 10.2 67 139-215 72-138 (222)
230 TIGR03375 type_I_sec_LssB type 98.2 4.3E-07 9.3E-12 105.6 0.2 138 323-495 492-638 (694)
231 COG0536 Obg Predicted GTPase [ 98.2 1.3E-06 2.8E-11 91.5 3.6 57 324-381 161-221 (369)
232 cd01861 Rab6 Rab6 subfamily. 98.1 2.1E-06 4.5E-11 80.0 4.5 54 324-378 2-60 (161)
233 cd01851 GBP Guanylate-binding 98.1 4.3E-06 9.2E-11 84.2 6.9 61 321-381 6-74 (224)
234 cd00882 Ras_like_GTPase Ras-li 98.1 6.8E-06 1.5E-10 73.3 7.5 124 113-244 3-147 (157)
235 cd00877 Ran Ran (Ras-related n 98.1 4.6E-06 1E-10 79.2 6.7 126 109-244 3-146 (166)
236 cd00157 Rho Rho (Ras homology) 98.1 2.6E-06 5.6E-11 80.0 4.7 127 110-244 4-160 (171)
237 COG3596 Predicted GTPase [Gene 98.1 1.8E-06 3.8E-11 88.3 3.7 64 320-384 37-104 (296)
238 cd04155 Arl3 Arl3 subfamily. 98.1 3.5E-06 7.6E-11 79.7 5.5 57 321-378 13-69 (173)
239 cd00154 Rab Rab family. Rab G 98.1 2.2E-06 4.7E-11 78.4 3.9 56 323-378 1-60 (159)
240 cd04109 Rab28 Rab28 subfamily. 98.1 5.4E-06 1.2E-10 82.3 7.0 126 109-244 3-153 (215)
241 TIGR00958 3a01208 Conjugate Tr 98.1 5E-07 1.1E-11 105.4 -0.6 139 323-496 508-655 (711)
242 TIGR03796 NHPM_micro_ABC1 NHPM 98.1 4.9E-07 1.1E-11 105.3 -0.7 138 323-495 506-652 (710)
243 KOG1490|consensus 98.1 7.6E-06 1.7E-10 89.2 8.3 140 105-244 167-328 (620)
244 cd04147 Ras_dva Ras-dva subfam 98.1 7.7E-06 1.7E-10 80.0 7.6 125 110-244 3-150 (198)
245 PRK10790 putative multidrug tr 98.1 7.1E-07 1.5E-11 101.8 0.3 137 323-495 368-513 (592)
246 cd04104 p47_IIGP_like p47 (47- 98.1 2.9E-06 6.3E-11 83.3 4.6 58 323-380 2-65 (197)
247 cd01863 Rab18 Rab18 subfamily. 98.1 4.1E-06 8.9E-11 78.1 5.4 56 323-378 1-60 (161)
248 cd04155 Arl3 Arl3 subfamily. 98.1 9.8E-06 2.1E-10 76.6 7.6 129 106-244 14-162 (173)
249 cd04110 Rab35 Rab35 subfamily. 98.1 9.2E-06 2E-10 79.6 7.6 127 108-244 8-154 (199)
250 CHL00189 infB translation init 98.1 2.2E-05 4.7E-10 91.4 11.8 130 105-244 243-397 (742)
251 PRK10218 GTP-binding protein; 98.1 1.4E-05 3.1E-10 91.3 10.2 101 134-244 62-172 (607)
252 PRK05306 infB translation init 98.1 9.5E-06 2.1E-10 95.0 8.9 129 107-245 291-440 (787)
253 cd04132 Rho4_like Rho4-like su 98.1 7.8E-06 1.7E-10 78.6 6.9 124 109-244 3-154 (187)
254 PLN03118 Rab family protein; P 98.1 1E-05 2.2E-10 79.9 7.8 130 107-244 15-164 (211)
255 TIGR01193 bacteriocin_ABC ABC- 98.1 7.6E-07 1.6E-11 103.7 -0.4 138 323-495 501-648 (708)
256 PLN03130 ABC transporter C fam 98.1 8.1E-07 1.8E-11 111.7 -0.2 135 323-493 1266-1409(1622)
257 cd04146 RERG_RasL11_like RERG/ 98.1 6.2E-06 1.3E-10 77.6 5.9 124 110-243 3-149 (165)
258 cd01860 Rab5_related Rab5-rela 98.0 5.6E-06 1.2E-10 77.2 5.4 56 323-378 2-61 (163)
259 cd04125 RabA_like RabA-like su 98.0 1.4E-05 3E-10 77.3 8.2 123 109-244 3-149 (188)
260 cd04154 Arl2 Arl2 subfamily. 98.0 5.1E-06 1.1E-10 79.1 5.1 56 321-378 13-69 (173)
261 cd04166 CysN_ATPS CysN_ATPS su 98.0 2.1E-06 4.5E-11 85.1 2.5 55 324-378 1-88 (208)
262 PRK13768 GTPase; Provisional 98.0 2.8E-05 6E-10 79.8 10.8 84 140-225 97-185 (253)
263 COG0012 Predicted GTPase, prob 98.0 3.3E-06 7.2E-11 89.8 4.1 58 323-381 3-81 (372)
264 cd04150 Arf1_5_like Arf1-Arf5- 98.0 1.5E-05 3.3E-10 75.1 8.2 123 112-244 6-148 (159)
265 PLN03118 Rab family protein; P 98.0 5.3E-06 1.1E-10 82.0 5.2 58 321-378 13-73 (211)
266 cd04126 Rab20 Rab20 subfamily. 98.0 9.3E-06 2E-10 81.6 7.0 98 109-216 3-114 (220)
267 cd04175 Rap1 Rap1 subgroup. T 98.0 2.1E-05 4.5E-10 73.8 8.9 123 109-244 4-150 (164)
268 TIGR00231 small_GTP small GTP- 98.0 4E-06 8.6E-11 76.0 3.9 132 109-244 4-151 (161)
269 cd01899 Ygr210 Ygr210 subfamil 98.0 1.3E-05 2.9E-10 84.8 8.4 71 111-182 3-110 (318)
270 PLN00223 ADP-ribosylation fact 98.0 1.2E-05 2.6E-10 77.8 7.5 129 108-244 19-165 (181)
271 cd04161 Arl2l1_Arl13_like Arl2 98.0 1.3E-05 2.9E-10 76.2 7.5 122 112-243 5-149 (167)
272 TIGR02857 CydD thiol reductant 98.0 1.2E-06 2.6E-11 98.5 0.4 138 323-495 349-495 (529)
273 TIGR00491 aIF-2 translation in 98.0 3E-05 6.5E-10 88.4 11.6 100 107-216 5-135 (590)
274 cd00880 Era_like Era (E. coli 98.0 4E-06 8.7E-11 76.0 3.6 55 327-381 1-59 (163)
275 PTZ00141 elongation factor 1- 98.0 4.2E-05 9.1E-10 84.7 12.3 103 133-245 78-201 (446)
276 PRK11176 lipid transporter ATP 98.0 1.2E-06 2.7E-11 99.5 0.1 138 323-495 370-517 (582)
277 cd01866 Rab2 Rab2 subfamily. 98.0 7.3E-06 1.6E-10 77.6 5.4 57 322-378 4-64 (168)
278 TIGR00957 MRP_assoc_pro multi 98.0 1.1E-06 2.4E-11 110.1 -0.3 136 323-493 1313-1456(1522)
279 COG1163 DRG Predicted GTPase [ 98.0 4.2E-06 9E-11 87.2 3.9 128 110-244 67-276 (365)
280 TIGR00487 IF-2 translation ini 98.0 1.3E-05 2.9E-10 91.3 8.3 131 105-245 86-238 (587)
281 KOG1489|consensus 98.0 3.3E-06 7.2E-11 87.6 3.0 57 324-381 198-258 (366)
282 smart00177 ARF ARF-like small 98.0 1.1E-05 2.5E-10 77.3 6.5 127 108-244 15-161 (175)
283 COG0536 Obg Predicted GTPase [ 98.0 2.5E-05 5.3E-10 82.1 9.3 134 108-244 161-320 (369)
284 TIGR00092 GTP-binding protein 98.0 7E-06 1.5E-10 88.1 5.3 58 323-380 3-80 (368)
285 cd01868 Rab11_like Rab11-like. 98.0 8.5E-06 1.8E-10 76.4 5.3 56 322-378 3-63 (165)
286 PTZ00133 ADP-ribosylation fact 98.0 1.9E-05 4E-10 76.5 7.7 127 108-244 19-165 (182)
287 PRK11160 cysteine/glutathione 98.0 1.2E-06 2.6E-11 99.7 -0.8 137 323-495 367-512 (574)
288 PTZ00243 ABC transporter; Prov 98.0 1.4E-06 3E-11 109.3 -0.3 136 323-492 1337-1480(1560)
289 TIGR02836 spore_IV_A stage IV 98.0 4.7E-06 1E-10 89.9 3.7 62 320-381 15-105 (492)
290 PLN03232 ABC transporter C fam 98.0 1.3E-06 2.9E-11 109.3 -0.6 134 323-492 1263-1405(1495)
291 smart00174 RHO Rho (Ras homolo 98.0 1.1E-05 2.5E-10 76.2 6.0 126 111-244 3-159 (174)
292 cd00876 Ras Ras family. The R 98.0 1.9E-05 4.2E-10 72.8 7.3 128 109-244 2-148 (160)
293 PLN00043 elongation factor 1-a 98.0 3.3E-05 7.2E-10 85.5 10.3 105 133-245 78-201 (447)
294 cd04156 ARLTS1 ARLTS1 subfamil 98.0 7.9E-06 1.7E-10 76.1 4.6 53 324-378 1-55 (160)
295 cd01867 Rab8_Rab10_Rab13_like 97.9 1.1E-05 2.4E-10 76.2 5.5 57 322-378 3-63 (167)
296 cd01889 SelB_euk SelB subfamil 97.9 5.5E-06 1.2E-10 80.6 3.3 56 323-378 1-79 (192)
297 PLN03110 Rab GTPase; Provision 97.9 3E-05 6.6E-10 77.2 8.7 125 107-244 13-161 (216)
298 cd04114 Rab30 Rab30 subfamily. 97.9 3.3E-05 7.1E-10 72.6 8.4 127 108-244 9-156 (169)
299 cd04115 Rab33B_Rab33A Rab33B/R 97.9 3.2E-05 7E-10 73.4 8.3 125 109-243 5-152 (170)
300 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.9 2.5E-05 5.5E-10 74.7 7.6 125 109-244 5-151 (172)
301 PLN03108 Rab family protein; P 97.9 2.9E-05 6.3E-10 76.9 8.2 127 108-244 8-155 (210)
302 PTZ00369 Ras-like protein; Pro 97.9 1.7E-05 3.8E-10 76.9 6.5 127 108-244 7-154 (189)
303 PRK00741 prfC peptide chain re 97.9 3.8E-05 8.3E-10 86.6 10.0 73 134-216 73-145 (526)
304 cd04162 Arl9_Arfrp2_like Arl9/ 97.9 2.3E-05 4.9E-10 74.4 6.8 122 112-243 5-146 (164)
305 cd04143 Rhes_like Rhes_like su 97.9 4.6E-05 1E-09 77.8 9.5 127 110-244 4-158 (247)
306 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.9 1.3E-05 2.8E-10 76.6 5.1 55 322-378 15-70 (174)
307 cd04157 Arl6 Arl6 subfamily. 97.9 1.3E-05 2.8E-10 74.5 5.0 54 324-378 1-56 (162)
308 PRK15467 ethanolamine utilizat 97.9 8.3E-06 1.8E-10 77.3 3.7 48 324-380 3-50 (158)
309 smart00175 RAB Rab subfamily o 97.9 1.3E-05 2.8E-10 74.6 4.9 55 323-378 1-60 (164)
310 cd00881 GTP_translation_factor 97.9 7.4E-06 1.6E-10 77.9 3.2 55 324-378 1-73 (189)
311 PRK13657 cyclic beta-1,2-gluca 97.9 2.7E-06 5.9E-11 97.0 0.2 138 323-495 362-508 (588)
312 TIGR01846 type_I_sec_HlyB type 97.9 3E-06 6.6E-11 98.5 0.5 138 323-495 484-630 (694)
313 cd04119 RJL RJL (RabJ-Like) su 97.9 1.5E-05 3.3E-10 74.2 5.1 56 323-378 1-60 (168)
314 cd04176 Rap2 Rap2 subgroup. T 97.9 2E-05 4.3E-10 73.7 5.9 126 109-244 4-150 (163)
315 cd01853 Toc34_like Toc34-like 97.9 2.8E-05 6E-10 79.7 7.4 115 104-218 29-165 (249)
316 TIGR00437 feoB ferrous iron tr 97.9 1.1E-05 2.3E-10 92.3 4.7 49 329-378 1-52 (591)
317 KOG1491|consensus 97.9 1.1E-05 2.5E-10 84.3 4.3 60 321-381 19-98 (391)
318 cd00878 Arf_Arl Arf (ADP-ribos 97.9 1.3E-05 2.9E-10 74.5 4.4 53 324-378 1-54 (158)
319 cd04116 Rab9 Rab9 subfamily. 97.9 4.7E-05 1E-09 71.8 8.1 127 108-244 7-158 (170)
320 cd04148 RGK RGK subfamily. Th 97.9 2E-05 4.4E-10 78.8 5.9 126 109-244 3-150 (221)
321 cd04145 M_R_Ras_like M-Ras/R-R 97.9 2.1E-05 4.6E-10 73.3 5.6 55 322-378 2-61 (164)
322 cd04167 Snu114p Snu114p subfam 97.9 6.8E-05 1.5E-09 74.4 9.5 66 140-215 71-136 (213)
323 TIGR02203 MsbA_lipidA lipid A 97.9 3.2E-06 6.9E-11 95.9 -0.0 138 323-495 359-506 (571)
324 KOG2486|consensus 97.9 1.4E-05 3.1E-10 81.7 4.6 62 320-381 134-197 (320)
325 cd01862 Rab7 Rab7 subfamily. 97.9 1.9E-05 4.1E-10 74.2 5.2 55 323-378 1-60 (172)
326 cd04113 Rab4 Rab4 subfamily. 97.9 1.7E-05 3.8E-10 74.0 4.9 56 323-378 1-60 (161)
327 cd01864 Rab19 Rab19 subfamily. 97.8 2.1E-05 4.5E-10 74.0 5.3 57 322-378 3-63 (165)
328 TIGR00503 prfC peptide chain r 97.8 6.1E-05 1.3E-09 85.0 10.0 72 134-215 74-145 (527)
329 cd01892 Miro2 Miro2 subfamily. 97.8 1.8E-05 3.8E-10 75.5 4.8 126 109-244 7-153 (169)
330 cd01890 LepA LepA subfamily. 97.8 1E-05 2.2E-10 76.9 2.9 55 324-378 2-78 (179)
331 COG5265 ATM1 ABC-type transpor 97.8 5.1E-06 1.1E-10 89.1 0.9 121 322-474 289-417 (497)
332 smart00178 SAR Sar1p-like memb 97.8 2.3E-05 4.9E-10 75.9 5.2 55 322-378 17-72 (184)
333 PLN03071 GTP-binding nuclear p 97.8 2.9E-05 6.3E-10 77.6 5.8 127 107-244 14-159 (219)
334 cd04111 Rab39 Rab39 subfamily. 97.8 5.8E-05 1.3E-09 75.0 7.9 122 109-244 5-153 (211)
335 cd01850 CDC_Septin CDC/Septin. 97.8 2.3E-05 4.9E-10 81.4 5.1 57 322-378 4-74 (276)
336 PTZ00258 GTP-binding protein; 97.8 4.3E-05 9.4E-10 82.9 7.4 77 105-182 20-126 (390)
337 cd01865 Rab3 Rab3 subfamily. 97.8 2.8E-05 6.1E-10 73.3 5.3 56 323-378 2-61 (165)
338 cd04118 Rab24 Rab24 subfamily. 97.8 2.4E-05 5.2E-10 75.7 4.9 56 323-378 1-61 (193)
339 cd04160 Arfrp1 Arfrp1 subfamil 97.8 2.3E-05 4.9E-10 73.5 4.5 55 324-378 1-61 (167)
340 smart00053 DYNc Dynamin, GTPas 97.8 0.00013 2.7E-09 74.4 10.1 86 141-230 126-218 (240)
341 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.8 2.6E-05 5.7E-10 73.3 4.8 55 323-378 3-62 (166)
342 cd04177 RSR1 RSR1 subgroup. R 97.8 5.8E-05 1.3E-09 71.4 7.0 128 109-244 4-151 (168)
343 cd04151 Arl1 Arl1 subfamily. 97.8 2.9E-05 6.4E-10 72.5 4.9 53 324-378 1-54 (158)
344 cd01891 TypA_BipA TypA (tyrosi 97.8 2E-05 4.3E-10 76.8 3.9 56 323-378 3-76 (194)
345 KOG0462|consensus 97.8 8.8E-05 1.9E-09 81.8 9.1 102 133-244 115-222 (650)
346 cd04149 Arf6 Arf6 subfamily. 97.8 3.6E-05 7.9E-10 73.3 5.5 55 322-378 9-64 (168)
347 PRK12317 elongation factor 1-a 97.8 2.1E-05 4.6E-10 86.4 4.4 58 321-378 5-95 (425)
348 cd04138 H_N_K_Ras_like H-Ras/N 97.8 3.8E-05 8.2E-10 71.0 5.4 54 323-378 2-60 (162)
349 PF00350 Dynamin_N: Dynamin fa 97.8 2.3E-05 5E-10 74.0 4.0 30 325-354 1-30 (168)
350 PRK12740 elongation factor G; 97.7 7.8E-05 1.7E-09 86.6 9.1 74 134-217 54-127 (668)
351 cd04135 Tc10 TC10 subfamily. 97.7 4.3E-05 9.2E-10 72.3 5.8 128 109-244 3-161 (174)
352 cd04159 Arl10_like Arl10-like 97.7 3.4E-05 7.4E-10 70.6 4.8 53 325-378 2-55 (159)
353 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.7 4.1E-05 8.8E-10 74.0 5.5 57 322-378 3-63 (183)
354 COG4988 CydD ABC-type transpor 97.7 6.5E-06 1.4E-10 91.6 -0.0 138 323-495 348-493 (559)
355 TIGR02204 MsbA_rel ABC transpo 97.7 6.8E-06 1.5E-10 93.3 0.1 138 323-495 367-513 (576)
356 TIGR01271 CFTR_protein cystic 97.7 5.6E-06 1.2E-10 103.7 -0.8 136 322-493 1245-1388(1490)
357 PTZ00099 rab6; Provisional 97.7 0.00015 3.3E-09 70.1 9.4 92 140-244 29-129 (176)
358 cd01884 EF_Tu EF-Tu subfamily. 97.7 3E-05 6.5E-10 76.4 4.4 57 322-378 2-76 (195)
359 cd04110 Rab35 Rab35 subfamily. 97.7 4.9E-05 1.1E-09 74.5 5.9 58 321-378 5-66 (199)
360 cd04121 Rab40 Rab40 subfamily. 97.7 0.0002 4.3E-09 70.2 10.1 90 141-244 56-154 (189)
361 PRK13351 elongation factor G; 97.7 0.00018 4E-09 83.8 11.5 84 134-227 67-153 (687)
362 cd01870 RhoA_like RhoA-like su 97.7 9.7E-05 2.1E-09 69.9 7.7 128 109-244 4-162 (175)
363 cd00879 Sar1 Sar1 subfamily. 97.7 4.2E-05 9.2E-10 73.7 5.2 55 322-378 19-74 (190)
364 cd04161 Arl2l1_Arl13_like Arl2 97.7 3.6E-05 7.8E-10 73.2 4.6 53 324-378 1-54 (167)
365 PRK04004 translation initiatio 97.7 0.00013 2.9E-09 83.3 9.9 100 107-216 7-137 (586)
366 PRK09601 GTP-binding protein Y 97.7 0.00011 2.3E-09 79.1 8.6 73 109-182 5-107 (364)
367 cd04137 RheB Rheb (Ras Homolog 97.7 0.00022 4.8E-09 68.0 9.8 127 109-244 4-150 (180)
368 cd00876 Ras Ras family. The R 97.7 2.9E-05 6.3E-10 71.6 3.6 53 324-378 1-58 (160)
369 cd04130 Wrch_1 Wrch-1 subfamil 97.7 9.3E-05 2E-09 70.4 7.1 96 141-244 49-161 (173)
370 cd04142 RRP22 RRP22 subfamily. 97.7 4.6E-05 1E-09 75.0 5.0 55 323-378 1-60 (198)
371 cd04137 RheB Rheb (Ras Homolog 97.7 3.2E-05 7E-10 73.7 3.7 54 323-378 2-60 (180)
372 cd04112 Rab26 Rab26 subfamily. 97.7 5.2E-05 1.1E-09 73.7 5.2 56 323-378 1-61 (191)
373 smart00173 RAS Ras subfamily o 97.7 5.1E-05 1.1E-09 70.9 4.9 53 324-378 2-59 (164)
374 TIGR02528 EutP ethanolamine ut 97.7 3.6E-05 7.8E-10 70.5 3.7 44 324-377 2-45 (142)
375 cd04123 Rab21 Rab21 subfamily. 97.7 4.8E-05 1E-09 70.4 4.5 55 323-378 1-60 (162)
376 cd04106 Rab23_lke Rab23-like s 97.7 4.7E-05 1E-09 70.9 4.5 55 323-378 1-62 (162)
377 cd04139 RalA_RalB RalA/RalB su 97.7 5.9E-05 1.3E-09 70.0 5.1 54 323-378 1-59 (164)
378 cd00157 Rho Rho (Ras homology) 97.6 6E-05 1.3E-09 70.7 5.1 56 323-379 1-60 (171)
379 COG1126 GlnQ ABC-type polar am 97.6 2.1E-05 4.6E-10 78.1 2.0 136 324-495 30-173 (240)
380 PRK10789 putative multidrug tr 97.6 9.7E-06 2.1E-10 92.2 -0.4 138 323-495 342-488 (569)
381 PF05049 IIGP: Interferon-indu 97.6 6.4E-05 1.4E-09 80.9 5.8 60 322-382 35-101 (376)
382 KOG0054|consensus 97.6 9.3E-06 2E-10 98.9 -0.7 125 321-483 1165-1299(1381)
383 cd04115 Rab33B_Rab33A Rab33B/R 97.6 6.7E-05 1.4E-09 71.2 5.2 57 322-378 2-62 (170)
384 cd01893 Miro1 Miro1 subfamily. 97.6 3.9E-05 8.5E-10 72.5 3.5 54 323-378 1-58 (166)
385 TIGR01842 type_I_sec_PrtD type 97.6 1.2E-05 2.6E-10 90.9 0.1 137 323-494 345-490 (544)
386 cd04122 Rab14 Rab14 subfamily. 97.6 7.4E-05 1.6E-09 70.4 5.4 56 323-378 3-62 (166)
387 cd04125 RabA_like RabA-like su 97.6 6.7E-05 1.5E-09 72.4 4.9 56 323-378 1-60 (188)
388 CHL00071 tufA elongation facto 97.6 5.4E-05 1.2E-09 82.9 4.7 59 320-378 10-86 (409)
389 cd04136 Rap_like Rap-like subf 97.6 8.4E-05 1.8E-09 69.2 5.2 54 323-378 2-60 (163)
390 cd04177 RSR1 RSR1 subgroup. R 97.6 8.6E-05 1.9E-09 70.2 5.3 55 323-378 2-60 (168)
391 PTZ00416 elongation factor 2; 97.6 0.00016 3.4E-09 86.0 8.4 67 139-215 91-157 (836)
392 cd01900 YchF YchF subfamily. 97.6 0.00014 3.1E-09 75.5 7.1 71 111-182 3-103 (274)
393 PRK09602 translation-associate 97.6 0.00016 3.5E-09 78.9 7.9 73 109-182 4-113 (396)
394 cd04140 ARHI_like ARHI subfami 97.6 9.2E-05 2E-09 69.8 5.3 54 323-378 2-60 (165)
395 cd04175 Rap1 Rap1 subgroup. T 97.6 6.3E-05 1.4E-09 70.5 4.1 54 323-378 2-60 (164)
396 cd04124 RabL2 RabL2 subfamily. 97.6 8E-05 1.7E-09 70.1 4.8 56 323-378 1-60 (161)
397 cd04128 Spg1 Spg1p. Spg1p (se 97.6 0.0005 1.1E-08 66.6 10.4 123 112-244 6-153 (182)
398 PLN00116 translation elongatio 97.6 0.0004 8.7E-09 82.7 11.7 67 139-215 97-163 (843)
399 KOG0410|consensus 97.6 8.4E-05 1.8E-09 77.6 5.1 58 321-378 177-237 (410)
400 cd04135 Tc10 TC10 subfamily. 97.6 9.1E-05 2E-09 70.0 5.1 55 323-378 1-59 (174)
401 TIGR01192 chvA glucan exporter 97.6 1.8E-05 3.9E-10 90.4 0.3 138 323-495 362-508 (585)
402 cd04120 Rab12 Rab12 subfamily. 97.6 0.00052 1.1E-08 68.0 10.6 119 113-244 7-150 (202)
403 cd04108 Rab36_Rab34 Rab34/Rab3 97.6 0.00063 1.4E-08 64.9 10.8 126 109-244 3-152 (170)
404 PTZ00133 ADP-ribosylation fact 97.6 0.0001 2.2E-09 71.4 5.3 55 322-378 17-72 (182)
405 TIGR00487 IF-2 translation ini 97.6 8.4E-05 1.8E-09 84.9 5.5 57 321-378 86-146 (587)
406 PLN03110 Rab GTPase; Provision 97.5 9.1E-05 2E-09 73.8 5.1 58 321-378 11-72 (216)
407 cd04134 Rho3 Rho3 subfamily. 97.5 0.0001 2.2E-09 71.5 5.2 127 110-244 4-161 (189)
408 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.5 0.00054 1.2E-08 69.5 10.5 94 142-243 63-173 (232)
409 cd04116 Rab9 Rab9 subfamily. 97.5 9.5E-05 2.1E-09 69.7 4.6 58 321-378 4-65 (170)
410 cd01873 RhoBTB RhoBTB subfamil 97.5 0.0004 8.6E-09 68.4 9.1 92 140-244 66-183 (195)
411 PRK12735 elongation factor Tu; 97.5 0.0001 2.2E-09 80.4 5.2 59 320-378 10-86 (396)
412 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.5 0.00047 1E-08 67.1 9.3 94 142-244 55-166 (182)
413 cd04150 Arf1_5_like Arf1-Arf5- 97.5 0.00012 2.6E-09 69.0 5.0 54 323-378 1-55 (159)
414 cd01871 Rac1_like Rac1-like su 97.5 0.00045 9.8E-09 66.3 8.8 127 110-244 5-162 (174)
415 cd04114 Rab30 Rab30 subfamily. 97.5 0.00011 2.4E-09 69.0 4.5 56 322-378 7-67 (169)
416 cd04176 Rap2 Rap2 subgroup. T 97.5 0.00014 3E-09 68.0 5.1 54 323-378 2-60 (163)
417 cd04131 Rnd Rnd subfamily. Th 97.5 0.00048 1E-08 66.6 9.0 121 111-243 6-161 (178)
418 COG4987 CydC ABC-type transpor 97.5 5.6E-05 1.2E-09 83.5 2.7 136 323-493 365-509 (573)
419 cd04101 RabL4 RabL4 (Rab-like4 97.5 0.00011 2.5E-09 68.5 4.5 56 323-378 1-63 (164)
420 cd04158 ARD1 ARD1 subfamily. 97.5 0.00013 2.7E-09 69.4 4.7 51 324-378 1-54 (169)
421 cd04132 Rho4_like Rho4-like su 97.5 0.00013 2.8E-09 70.2 4.7 55 323-378 1-60 (187)
422 cd00877 Ran Ran (Ras-related n 97.5 0.00014 3.1E-09 69.0 4.9 57 323-379 1-61 (166)
423 COG2895 CysN GTPases - Sulfate 97.4 0.00046 1E-08 72.9 8.8 97 137-245 83-191 (431)
424 TIGR00490 aEF-2 translation el 97.4 0.00041 9E-09 81.3 9.4 72 135-216 81-152 (720)
425 COG1117 PstB ABC-type phosphat 97.4 8.3E-05 1.8E-09 73.9 3.0 134 324-492 35-183 (253)
426 PF08477 Miro: Miro-like prote 97.4 0.00013 2.9E-09 64.7 4.1 56 324-379 1-62 (119)
427 cd04127 Rab27A Rab27a subfamil 97.4 0.00015 3.3E-09 69.0 4.8 25 322-346 4-28 (180)
428 cd04104 p47_IIGP_like p47 (47- 97.4 0.0002 4.4E-09 70.3 5.7 101 109-216 4-121 (197)
429 PF00735 Septin: Septin; Inte 97.4 0.00012 2.6E-09 76.3 4.3 57 322-378 4-74 (281)
430 smart00176 RAN Ran (Ras-relate 97.4 0.00068 1.5E-08 67.1 9.5 95 140-244 44-141 (200)
431 cd04144 Ras2 Ras2 subfamily. 97.4 0.00013 2.9E-09 70.7 4.3 53 324-378 1-58 (190)
432 cd04105 SR_beta Signal recogni 97.4 0.00027 5.8E-09 69.9 6.5 72 137-217 45-124 (203)
433 cd04109 Rab28 Rab28 subfamily. 97.4 0.00019 4.1E-09 71.3 5.3 55 323-378 1-61 (215)
434 PRK05306 infB translation init 97.4 0.00015 3.1E-09 85.2 5.0 57 321-378 289-348 (787)
435 cd04117 Rab15 Rab15 subfamily. 97.4 0.00019 4.1E-09 67.6 4.9 55 323-378 1-60 (161)
436 cd01850 CDC_Septin CDC/Septin. 97.4 0.00046 1E-08 71.7 8.0 126 109-239 7-184 (276)
437 PLN03127 Elongation factor Tu; 97.4 0.00021 4.5E-09 79.2 5.7 59 320-378 59-135 (447)
438 smart00177 ARF ARF-like small 97.4 0.00025 5.5E-09 67.9 5.5 55 322-378 13-68 (175)
439 COG3839 MalK ABC-type sugar tr 97.4 4.9E-05 1.1E-09 80.8 0.6 117 324-475 31-152 (338)
440 PTZ00369 Ras-like protein; Pro 97.4 0.00022 4.8E-09 69.1 5.0 56 322-378 5-64 (189)
441 cd04111 Rab39 Rab39 subfamily. 97.4 0.00022 4.7E-09 70.9 5.0 55 323-378 3-63 (211)
442 PLN00223 ADP-ribosylation fact 97.4 0.00027 5.8E-09 68.4 5.5 55 322-378 17-72 (181)
443 COG1217 TypA Predicted membran 97.4 0.00087 1.9E-08 73.0 9.7 103 133-245 61-173 (603)
444 cd01886 EF-G Elongation factor 97.3 0.00015 3.3E-09 75.1 3.8 55 324-378 1-75 (270)
445 PLN03071 GTP-binding nuclear p 97.3 0.0003 6.5E-09 70.3 5.8 59 320-378 11-73 (219)
446 COG1135 AbcC ABC-type metal io 97.3 0.00012 2.6E-09 76.2 3.0 137 324-495 34-178 (339)
447 cd00882 Ras_like_GTPase Ras-li 97.3 0.00012 2.7E-09 65.1 2.7 53 327-379 1-57 (157)
448 PRK07560 elongation factor EF- 97.3 0.00042 9.1E-09 81.4 7.9 68 138-215 85-152 (731)
449 cd04107 Rab32_Rab38 Rab38/Rab3 97.3 0.00022 4.8E-09 69.8 4.7 56 323-378 1-61 (201)
450 smart00174 RHO Rho (Ras homolo 97.3 0.0002 4.3E-09 67.7 4.1 53 325-378 1-57 (174)
451 TIGR00993 3a0901s04IAP86 chlor 97.3 0.00028 6.1E-09 80.3 6.0 110 108-217 120-251 (763)
452 cd04148 RGK RGK subfamily. Th 97.3 0.00022 4.8E-09 71.4 4.6 56 323-378 1-61 (221)
453 TIGR00991 3a0901s02IAP34 GTP-b 97.3 0.0004 8.7E-09 73.1 6.6 112 106-218 38-169 (313)
454 cd04146 RERG_RasL11_like RERG/ 97.3 0.0002 4.3E-09 67.3 4.0 53 324-378 1-58 (165)
455 PLN03108 Rab family protein; P 97.3 0.00029 6.4E-09 69.8 5.3 57 322-378 6-66 (210)
456 CHL00189 infB translation init 97.3 0.00018 3.9E-09 83.8 4.3 57 321-378 243-306 (742)
457 PRK00049 elongation factor Tu; 97.3 0.00025 5.3E-09 77.4 5.1 58 321-378 11-86 (396)
458 KOG1145|consensus 97.3 0.00072 1.6E-08 74.9 8.5 129 105-245 144-304 (683)
459 COG0481 LepA Membrane GTPase L 97.3 0.0017 3.8E-08 70.9 11.2 92 140-244 76-173 (603)
460 PF10662 PduV-EutP: Ethanolami 97.3 0.00021 4.6E-09 67.0 3.7 47 324-380 3-49 (143)
461 TIGR00491 aIF-2 translation in 97.3 0.00021 4.6E-09 81.6 4.5 54 323-378 5-80 (590)
462 cd04108 Rab36_Rab34 Rab34/Rab3 97.3 0.00031 6.7E-09 67.1 4.9 54 324-378 2-60 (170)
463 PF00025 Arf: ADP-ribosylation 97.3 0.00017 3.6E-09 69.5 2.8 132 105-244 13-163 (175)
464 cd01874 Cdc42 Cdc42 subfamily. 97.3 0.001 2.3E-08 63.8 8.3 126 111-244 6-162 (175)
465 PRK14845 translation initiatio 97.3 0.0023 5E-08 77.2 12.8 65 142-216 528-592 (1049)
466 cd04170 EF-G_bact Elongation f 97.2 0.00023 5E-09 73.2 3.9 22 324-345 1-22 (268)
467 cd01870 RhoA_like RhoA-like su 97.2 0.00043 9.3E-09 65.5 5.3 55 323-378 2-60 (175)
468 PTZ00132 GTP-binding nuclear p 97.2 0.00074 1.6E-08 66.8 7.2 128 107-244 10-155 (215)
469 cd04117 Rab15 Rab15 subfamily. 97.2 0.0021 4.5E-08 60.5 9.9 121 111-244 5-149 (161)
470 cd01875 RhoG RhoG subfamily. 97.2 0.0017 3.7E-08 63.2 9.6 94 141-244 52-164 (191)
471 PRK05506 bifunctional sulfate 97.2 0.00018 4E-09 83.0 3.2 30 321-350 23-52 (632)
472 COG1116 TauB ABC-type nitrate/ 97.2 0.00012 2.7E-09 74.2 1.5 23 324-346 31-53 (248)
473 cd04126 Rab20 Rab20 subfamily. 97.2 0.0003 6.6E-09 70.7 4.1 54 323-378 1-55 (220)
474 TIGR00475 selB selenocysteine- 97.2 0.00029 6.4E-09 80.5 4.5 56 323-378 1-61 (581)
475 KOG1486|consensus 97.2 0.0003 6.5E-09 71.1 4.0 61 320-381 60-123 (364)
476 TIGR00485 EF-Tu translation el 97.2 0.00043 9.3E-09 75.4 5.5 58 321-378 11-86 (394)
477 cd04133 Rop_like Rop subfamily 97.2 0.0017 3.6E-08 62.9 8.9 92 141-244 50-160 (176)
478 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.2 0.0021 4.6E-08 64.7 9.9 90 142-243 51-161 (222)
479 cd01882 BMS1 Bms1. Bms1 is an 97.2 0.00047 1E-08 69.4 5.0 56 321-378 38-94 (225)
480 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.1 0.0006 1.3E-08 65.2 5.4 56 322-378 2-61 (172)
481 cd04129 Rho2 Rho2 subfamily. 97.1 0.0015 3.1E-08 63.3 8.1 126 108-244 3-160 (187)
482 KOG1547|consensus 97.1 0.00032 6.9E-09 70.6 3.5 57 322-378 46-115 (336)
483 cd04147 Ras_dva Ras-dva subfam 97.1 0.00045 9.8E-09 67.5 4.4 53 324-378 1-58 (198)
484 cd04168 TetM_like Tet(M)-like 97.1 0.00036 7.9E-09 70.9 3.8 55 324-378 1-75 (237)
485 cd04162 Arl9_Arfrp2_like Arl9/ 97.1 0.00061 1.3E-08 64.6 5.1 52 325-378 2-55 (164)
486 PRK04004 translation initiatio 97.1 0.0005 1.1E-08 78.7 5.3 55 322-378 6-82 (586)
487 cd04105 SR_beta Signal recogni 97.1 0.00056 1.2E-08 67.6 4.9 53 324-378 2-59 (203)
488 PTZ00265 multidrug resistance 97.1 0.00011 2.5E-09 91.9 -0.3 70 323-424 412-483 (1466)
489 PTZ00132 GTP-binding nuclear p 97.1 0.00083 1.8E-08 66.5 5.7 58 321-378 8-69 (215)
490 COG4618 ArpD ABC-type protease 97.1 0.00025 5.3E-09 78.1 1.9 132 324-491 364-505 (580)
491 PRK10522 multidrug transporter 97.0 0.00022 4.8E-09 80.8 1.5 126 323-495 350-486 (547)
492 cd01874 Cdc42 Cdc42 subfamily. 97.0 0.00092 2E-08 64.2 5.4 55 323-378 2-60 (175)
493 cd01892 Miro2 Miro2 subfamily. 97.0 0.001 2.2E-08 63.4 5.6 56 322-378 4-65 (169)
494 COG0532 InfB Translation initi 97.0 0.0039 8.4E-08 69.2 10.6 95 139-244 54-157 (509)
495 cd04134 Rho3 Rho3 subfamily. 97.0 0.00093 2E-08 64.8 5.2 54 324-378 2-59 (189)
496 TIGR01194 cyc_pep_trnsptr cycl 97.0 9E-05 1.9E-09 84.2 -2.2 126 323-494 369-506 (555)
497 PRK12736 elongation factor Tu; 97.0 0.00085 1.8E-08 73.2 5.4 58 321-378 11-86 (394)
498 TIGR00484 EF-G translation elo 97.0 0.00058 1.3E-08 79.7 4.3 57 322-378 10-86 (689)
499 TIGR02836 spore_IV_A stage IV 97.0 0.0025 5.5E-08 69.3 8.7 132 107-241 18-219 (492)
500 COG1100 GTPase SAR1 and relate 97.0 0.00084 1.8E-08 66.0 4.6 55 323-378 6-65 (219)
No 1
>KOG1424|consensus
Probab=100.00 E-value=5.4e-113 Score=907.02 Aligned_cols=548 Identities=45% Similarity=0.737 Sum_probs=441.7
Q ss_pred CCCC--CCCCCchHHHHhhhhcCCCCcc-CCCCccceeeccccccccccCcccccccccHHHHHHHHHhcCCcccccccc
Q psy9995 1 MGKK--GGQNSLGKALIKNRFGHKPKRV-SNDGLLHTSELEDGYDWNKINLKSVTEESSFQEFLSTAQLAGTEFTAEKLN 77 (595)
Q Consensus 1 m~~~--~~~~~lg~~l~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~svte~~~l~~fl~~a~l~~~~f~ae~~~ 77 (595)
|||. +...+||+++++++.+....++ +..+++|++ |.|+|++++++|||++++||+||.||++|+++|+||+.|
T Consensus 1 m~k~~k~~~~~lgr~~~k~~~~~~q~~~~~~~s~~~~~---d~~~~~~~~l~svt~~s~~d~~l~~ae~a~~~f~ae~~~ 77 (562)
T KOG1424|consen 1 MGKQPKKALPSLGRALRKHHDGMRQRSKEKGKSKLLRS---DKYEWGKLVLESVTEESDLDAFLGTAELAETEFTAEKSN 77 (562)
T ss_pred CCcCccccccchHHHhhhcccchhhhhhhcCCcccccc---cccccccceeeeeecccChHHhhhhhhhhhhhhhhhhcc
Confidence 8887 4567899999999998764443 778889987 889999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCccCC-HHHHHHHHHHHHh--cCCcccCCCCCCCCcCCCHHHHHHHHHHHhhhhcCeeeEEEeCCCcccCh
Q psy9995 78 ITFVNPKSGVGLLS-KEEKELALQAHKE--KRELLKIPRRPKWDKNTTAEQLQAMERDEFLQWRRELNLLQEEDGLVITP 154 (595)
Q Consensus 78 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~--~~~~l~iprRPnw~kst~~n~L~~~Er~~f~~wrg~~~~L~DT~Gi~~t~ 154 (595)
+++|..++..+.++ ..++....++|++ |...|+|||||+|+..|++++|++.|+++|++|++.++.|++..++++||
T Consensus 78 ~~~i~~~~~~~~~~s~~ee~r~~q~~ee~~~~~~L~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTp 157 (562)
T KOG1424|consen 78 ETIIENEQRTGSLSSATEEQRELQKQEEALNASRLDIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTP 157 (562)
T ss_pred ccccchhhcccccccHHHHhhhhhhhhhhhhcccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeech
Confidence 99999887777666 8888888889999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeE
Q psy9995 155 YEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAV 234 (595)
Q Consensus 155 ~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~v 234 (595)
||+|+++|||||+|+|+|||||+|||||+|+.|++++|++|++++...|.+|||+||+||++++++.+|++||.+.++.+
T Consensus 158 FErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~ 237 (562)
T KOG1424|consen 158 FERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPV 237 (562)
T ss_pred hhhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceE
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhcc-ccCCccccCHHHHHHHhhhhccc
Q psy9995 235 AFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLK-IKSSPKLLNREELISLFKSFHDV 313 (595)
Q Consensus 235 i~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~~eL~e~~~~~~~~ 313 (595)
+||||......++.....+. ....+...... ..+.. ++....+..... ..+..+ +...++++.+.....+
T Consensus 238 vf~SA~~at~~~~~~~~~e~-~r~~d~~~~~~---~~~~~----~~~d~~i~r~~~d~~e~~~-v~~~~~~s~~~~~~t~ 308 (562)
T KOG1424|consen 238 VFFSALAATEQLESKVLKED-RRSLDGVSRAL---GAIFV----GEVDLKIARDKGDGEEIED-VEQLRLISAMEPTPTG 308 (562)
T ss_pred EEEecccccccccccchhhh-hhcccchhhhc---ccccc----ccchhhhhhhcccccchhh-HHhhhhhhccccCCCC
Confidence 99999885443222100000 00000000000 00000 000000000000 000000 2222334444433333
Q ss_pred CCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhc
Q psy9995 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNG 393 (595)
Q Consensus 314 ~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~g 393 (595)
.+.++ .++||+||||||||||+||+|+|.++|+||+|||+|||||||.+++.++||||||++||+|..++++|||+|
T Consensus 309 --~~~~~-~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~emvl~G 385 (562)
T KOG1424|consen 309 --ERYKD-VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEMVLNG 385 (562)
T ss_pred --cCCCc-eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHHHHhc
Confidence 33344 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcCccccCCCCCHHHHHHHHHH
Q psy9995 394 ILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 394 il~id~lrd~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~gG~pD~~rAAr~iLk 473 (595)
|+|||||++|++++.++|++||.++|+..|| ..|.+.++..++|++.|+|.+||++||||+++|.||..||||+||+
T Consensus 386 iLPIDQmrd~~~~~~llaerIP~~~Le~~Y~---~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILK 462 (562)
T KOG1424|consen 386 ILPIDQLRDHYGAVGLLAERIPRHVLERLYG---HKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILK 462 (562)
T ss_pred CccHHHhhcccchHHHHHHhcCHHHHHHHhC---CCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHH
Confidence 9999999999999999999999999999999 3566777778899999999999999999999999999999999999
Q ss_pred HHHhCCceeecCCCCCChhhhhh--chhcccC-----CCCCCchhhhhccCCCCccccccchhhhccCCCceEecccccc
Q psy9995 474 DFVNGHLLYCQAPPGVPQEKYHI--FKLKERK-----PLPKQTPRAMRALEPNVVRATDIDSKFFKKATGTALVKGRASV 546 (595)
Q Consensus 474 D~~~GKL~~~~~PP~~~~~~f~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~ff~~~~~~~~~~~~~~~ 546 (595)
||++|||+||++||++++..|.+ .|+.... .++...... ...... .++.+|..||.+.++.+|++|....
T Consensus 463 Dyv~GKL~~~~~PPg~~~~~~~~~~~pe~~~~~~~~~~l~~~~~e~--~~~~~~-~~~~~d~~~~~~~~~~~~~~g~~~~ 539 (562)
T KOG1424|consen 463 DYVSGKLLYCFPPPGYEPQKFTWEEHPETTERVYLQDRLEGLQSEQ--EEEGEE-LSSSVDEEFEDDLSSDAETNGDEET 539 (562)
T ss_pred HHhCCeeeeeeCCCCCCccccchhhCchHhhhhhhhhhcCchhhhh--hhhhhh-hhhhhhhhhccccchhhhcCccccc
Confidence 99999999999999999886663 4443321 111111111 111011 2244999999999999999998877
Q ss_pred CCCCCCccccCCCcccccccCCCCCCCcccccccccc
Q psy9995 547 VPQGLGKGSMNASTMSLNTISSEDPKPWKQHKEKRNK 583 (595)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (595)
| .+...+ .....+||+.|+ +.+|
T Consensus 540 ~----------~~~~~~---~~~~~~~~~~~~-~~~~ 562 (562)
T KOG1424|consen 540 P----------TSAPGS---ENAGRNPYALLN-EDGK 562 (562)
T ss_pred c----------ccCCcc---cccCCCcccccc-ccCC
Confidence 5 122222 377889999998 5543
No 2
>KOG2423|consensus
Probab=100.00 E-value=4e-47 Score=391.83 Aligned_cols=369 Identities=28% Similarity=0.505 Sum_probs=292.8
Q ss_pred cccCcccccccccHHHHHHHHHhcC-------CcccccccceEEeCCC---CCCccCCHHHHHHHHHHHHhcCCcccCCC
Q psy9995 44 NKINLKSVTEESSFQEFLSTAQLAG-------TEFTAEKLNITFVNPK---SGVGLLSKEEKELALQAHKEKRELLKIPR 113 (595)
Q Consensus 44 ~~~~~~svte~~~l~~fl~~a~l~~-------~~f~ae~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~l~ipr 113 (595)
.|..-..|+.|..|+.|.+ ||.. .-....|+.+.+++.. .++++|..|.+...+ +.-....
T Consensus 78 kWFgntRvI~q~~Lq~Fr~--e~g~~~~dpyqVllk~~KlPmSLL~e~~k~~rvhvldtesF~~tF-------G~KsqRK 148 (572)
T KOG2423|consen 78 KWFGNTRVISQTELQKFRE--ELGKKLKDPYQVLLKQSKLPMSLLQEKTKTPRVHVLDTESFEDTF-------GPKSQRK 148 (572)
T ss_pred hhccCceeecHHHHHHHHH--HHHhhhcChhhheeecCCCChhhhhccccCcceeeecccchhhhh-------Cchhhhc
Confidence 4566789999999999988 6643 2234456666666543 357788888887664 5667788
Q ss_pred CCCCCcCCCHHHHHHHHHHHhhhhcCe-eeEE-EeCCCccc----Chhh--hhHHHHHHHHHHHhhcCeEEEEEeCCCCC
Q psy9995 114 RPKWDKNTTAEQLQAMERDEFLQWRRE-LNLL-QEEDGLVI----TPYE--KNLDFWRQLWRVIERSDVIVQIVDARNPL 185 (595)
Q Consensus 114 RPnw~kst~~n~L~~~Er~~f~~wrg~-~~~L-~DT~Gi~~----t~~e--rn~e~~rql~~vie~sDvVl~VvDAR~Pl 185 (595)
||+...+ ++++|.+.-++.-..+... ...+ .+..|... ..|. ....+|-.|.++|..||+||+|+|||+|+
T Consensus 149 Rp~L~~s-~le~L~k~a~e~~~~yee~~~~~~~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPm 227 (572)
T KOG2423|consen 149 RPKLTAS-SLEELSKAAEESDDKYEEKKLGDLREEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPM 227 (572)
T ss_pred Ccccchh-hHHHHHHHhhhhhhhhhhhccccchhhcccchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccCCc
Confidence 9998654 5566665554433233222 1112 22234332 3343 34678999999999999999999999999
Q ss_pred CCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhcccccc
Q psy9995 186 LFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESD 265 (595)
Q Consensus 186 ~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (595)
.++|..+++|+++-.+.|..|+||||+||++......|...|.+....+.|-+..+.
T Consensus 228 GTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~n----------------------- 284 (572)
T KOG2423|consen 228 GTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINN----------------------- 284 (572)
T ss_pred ccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcC-----------------------
Confidence 999999999999877889999999999999999999999999776555555433221
Q ss_pred chhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCc
Q psy9995 266 ESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
-++...|+++|+++++- ..+...|.||+||||||||||+||+|...
T Consensus 285 -------------------------------sfGKgalI~llRQf~kL---h~dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 285 -------------------------------SFGKGALIQLLRQFAKL---HSDKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred -------------------------------ccchhHHHHHHHHHHhh---ccCccceeeeeecCCCCchHHHHHHHhhc
Confidence 12345677777766542 12345799999999999999999999999
Q ss_pred ceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhhhhhhHHHHhhhcChhHHHHHhCC
Q psy9995 346 KKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGI 425 (595)
Q Consensus 346 ~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd~~~~v~~l~~~i~~~~le~~Y~i 425 (595)
+.|.|.++||-||-.|.+.+-..|+||||||++.|+- ++..+.++.|++.++.+.++...+..++.++-...|+..|+|
T Consensus 331 kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~-dset~ivLkGvVRVenv~~pe~yi~~vl~R~k~ehl~rtYkI 409 (572)
T KOG2423|consen 331 KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSS-DSETDIVLKGVVRVENVKNPEDYIDGVLERCKPEHLSRTYKI 409 (572)
T ss_pred ccccccCCCCcchHHHHHHHHhceeEecCCCccCCCC-CchHHHHhhceeeeeecCCHHHHHHHHHHhhhHHHHHhhhCC
Confidence 9999999999999999999999999999999999985 778899999999999998888888889999977778899998
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHhhhhcCccccCCCCCHHHHHHHHHHHHHhCCceeecCCCCCCh
Q psy9995 426 MITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDFVNGHLLYCQAPPGVPQ 491 (595)
Q Consensus 426 ~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~~PP~~~~ 491 (595)
.-.. ++.+||+.+|.+.|.+++||.||....|++||+||..|||+|+.|||+.+.
T Consensus 410 ~~w~-----------d~~dfle~La~k~GkLlKGGEPd~~~vsKmvLnDwqRGkiP~FVpPp~~e~ 464 (572)
T KOG2423|consen 410 SGWN-----------DSTDFLEKLAIKQGKLLKGGEPDLVVVSKMVLNDWQRGKIPFFVPPPGLEE 464 (572)
T ss_pred Cccc-----------cHHHHHHHHHHHhCccccCCCCchhHHHHHHhhHhhcCCCceecCCCcccc
Confidence 5321 478999999999999999999999999999999999999999999998654
No 3
>KOG2484|consensus
Probab=100.00 E-value=3.1e-46 Score=387.91 Aligned_cols=273 Identities=29% Similarity=0.495 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEe
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFS 238 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~S 238 (595)
..+...+.++++.+||||+|+|||+|++++|++.++.|....++|+.|+||||+||+|.+.++.|+.||+..|..++|.+
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fka 213 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKA 213 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeec
Confidence 35567788999999999999999999999999999999755677999999999999999999999999999999998876
Q ss_pred cccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCC
Q psy9995 239 ATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRM 318 (595)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~ 318 (595)
+....+.+ ......+.+++.+-|+.+|..++.. ..
T Consensus 214 st~~~~~~------------------------------------------~~~~~~s~c~gae~l~~~lgny~~~---~~ 248 (435)
T KOG2484|consen 214 STQMQNSN------------------------------------------SKNLQSSVCFGAETLMKVLGNYCRK---GE 248 (435)
T ss_pred cccccccc------------------------------------------ccccccchhhhHHHHHHHhcCcccc---cc
Confidence 65433311 0011234567788899999877653 12
Q ss_pred CCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchh
Q psy9995 319 NPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPID 398 (595)
Q Consensus 319 ~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id 398 (595)
-...+++||||||||||||+||+|..++.|.|+++||.|+..|+++++.++.|+||||+++++... ..++++...+++.
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~-~~~~~Lrn~~~i~ 327 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDE-KDALALRNCIPIG 327 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCceeecCCCc-cchhhhhcccccc
Confidence 245699999999999999999999999999999999999999999999999999999999998643 3468888889999
Q ss_pred hhhhhhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcCccccCCCCCHHHHHHHHHHHHHhC
Q psy9995 399 QMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDFVNG 478 (595)
Q Consensus 399 ~lrd~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~gG~pD~~rAAr~iLkD~~~G 478 (595)
.+.|++.++..++.+++...+...|+++-. .+.++||..+|+++|.+.+||.||...||+.||+||+.|
T Consensus 328 ~~~dp~~~v~~iL~~~~~e~~~~~Y~~~~~-----------~~~~~Fl~~~ar~~G~~~kGG~pd~~~AA~~vl~Dw~~G 396 (435)
T KOG2484|consen 328 KVADPVTPVSCILKRCSKESRSVLYNIPSI-----------RATDDFLEKFARRRGLLLKGGIPDVNAAAFAVLNDWRTG 396 (435)
T ss_pred cccCccchHHHHHHHhhHHHHHHHhcCCCc-----------chHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHhhccC
Confidence 999999999999999999888888988532 146789999999999999999999999999999999999
Q ss_pred CceeecCCCC
Q psy9995 479 HLLYCQAPPG 488 (595)
Q Consensus 479 KL~~~~~PP~ 488 (595)
||.||.+||.
T Consensus 397 ki~y~~~pp~ 406 (435)
T KOG2484|consen 397 KIGYYTLPPT 406 (435)
T ss_pred ceeeeeCCCh
Confidence 9999988886
No 4
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.5e-40 Score=344.72 Aligned_cols=260 Identities=25% Similarity=0.379 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEe
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFS 238 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~S 238 (595)
...+++++++++.||+||+|+|+|+|++++++.+++++. ++|.|+|+||+||++..+...|.+++++.+..++++|
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vS 87 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAIN 87 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 466899999999999999999999999999988888764 6899999999999988777899999977677889999
Q ss_pred cccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhccc-----
Q psy9995 239 ATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDV----- 313 (595)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~----- 313 (595)
|+++.+. ++|.+.+....+.
T Consensus 88 a~~~~gi-------------------------------------------------------~~L~~~l~~~l~~~~~~~ 112 (287)
T PRK09563 88 AKKGQGV-------------------------------------------------------KKILKAAKKLLKEKNERR 112 (287)
T ss_pred CCCcccH-------------------------------------------------------HHHHHHHHHHHHHHHhhh
Confidence 9876551 1121111111100
Q ss_pred CCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchh--HHHH
Q psy9995 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKA--DMIL 391 (595)
Q Consensus 314 ~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~--eli~ 391 (595)
.........++|++||+||||||||||+|++.+.+.|+++||+|++.|++.++.++.|+||||+++|.+.+... .+++
T Consensus 113 ~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~ 192 (287)
T PRK09563 113 KAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPKLEDQEVGLKLAL 192 (287)
T ss_pred hhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCCCCcHHHHHHHHH
Confidence 00111234689999999999999999999999989999999999999999999999999999999998765443 3456
Q ss_pred hcCCc-----hhhhhhhhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcCccccCCCCCHHH
Q psy9995 392 NGILP-----IDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPR 466 (595)
Q Consensus 392 ~gil~-----id~lrd~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~gG~pD~~r 466 (595)
.|.+. ++.+.++ .+.++..+.+ ..+...|+++.+. .+.+|||+.+|+++|++.+||.||..+
T Consensus 193 ~~~i~~~~~~~~~~~~~--ll~~l~~~~~-~~l~~~y~~~~~~----------~~~~~~l~~~a~~~g~~~k~g~~D~~~ 259 (287)
T PRK09563 193 TGAIKDEALDLEEVAIF--ALEYLSKHYP-ERLKERYKLDELP----------EDILELLEAIARKRGALRKGGEIDYER 259 (287)
T ss_pred hCCcchhhcChHHHHHH--HHHHHHhhCH-HHHHHHhCCCCCC----------CCHHHHHHHHHHHhCccccCCccCHHH
Confidence 66543 3333222 2223333333 3466789984221 147999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceee--cCCCCCC
Q psy9995 467 SARYILKDFVNGHLLYC--QAPPGVP 490 (595)
Q Consensus 467 AAr~iLkD~~~GKL~~~--~~PP~~~ 490 (595)
||+.||+||++|||.++ .+||..+
T Consensus 260 aa~~~l~d~~~Gklg~~~ld~~~~~~ 285 (287)
T PRK09563 260 ASELLLNEFRNGKLGKITLETPEMAE 285 (287)
T ss_pred HHHHHHHHHHcCCCCcEEccCCcccc
Confidence 99999999999999743 4555543
No 5
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=350.16 Aligned_cols=272 Identities=33% Similarity=0.480 Sum_probs=215.8
Q ss_pred hhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhC-CCeEE
Q psy9995 157 KNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSV-NVAVA 235 (595)
Q Consensus 157 rn~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~-gi~vi 235 (595)
.+...|++++++++.+|+|++|+|||+|++++++.+++++. +++.++|+||+||++......|.++|.+. +...+
T Consensus 20 ~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~ 95 (322)
T COG1161 20 HMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPI 95 (322)
T ss_pred chHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccE
Confidence 45688999999999999999999999999999999999987 67779999999999999999999999888 67788
Q ss_pred EEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCC
Q psy9995 236 FFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNI 315 (595)
Q Consensus 236 ~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~ 315 (595)
++|+..+.+....... ...+ .++.++.++ +
T Consensus 96 ~v~~~~~~~~~~i~~~-------------------------------------------~~~~-~~~~i~~~~---~--- 125 (322)
T COG1161 96 FVSAKSRQGGKKIRKA-------------------------------------------LEKL-SEEKIKRLK---K--- 125 (322)
T ss_pred EEEeecccCccchHHH-------------------------------------------HHHH-HHHHHHHHh---h---
Confidence 8988876652110000 0000 002222222 1
Q ss_pred CCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCC
Q psy9995 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGIL 395 (595)
Q Consensus 316 ~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil 395 (595)
.......+++++||+||||||||||+|++++.+.||+.||+||+.||+.++.+++|+||||+++|++.+. +.++.++.
T Consensus 126 ~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~~~--~~v~~~l~ 203 (322)
T COG1161 126 KGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFDDD--ELVLLKLA 203 (322)
T ss_pred cCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCccch--HHHhhccc
Confidence 1122445889999999999999999999999999999999999999999999999999999999998654 77888999
Q ss_pred chhhhhhhhhhHHHHhhhcChhHH-H----HHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcC-ccccCCCCCHHHHHH
Q psy9995 396 PIDQMRDHVPAVNMLCTLVPRHVL-E----NIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRG-FMTSNGQPDNPRSAR 469 (595)
Q Consensus 396 ~id~lrd~~~~v~~l~~~i~~~~l-e----~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG-~~~~gG~pD~~rAAr 469 (595)
+.+++++.+.+...+..++....+ . ..|.+..... .+......++++..+|.+|| +++++|.+|+.+||+
T Consensus 204 ~~~~Ik~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~y~~----~~~~~~~~~~~l~~~a~~rg~~l~~~g~~d~~~~~~ 279 (322)
T COG1161 204 PKGEIKDPVLPADEVAERLLGGLLIDEHYGEKLNITRYES----NPIHRTDPEEFLELIAKKRGWLLLKGGEPDLERAAE 279 (322)
T ss_pred cccccCccccChHHHHHHHHhhhhhhhhhhHhhCCccccc----ccccccCHHHHHHHHHHHhhhhhcCCCCccHHHHHH
Confidence 999999998888887776654331 2 2344421111 11112247889999999999 666788999999999
Q ss_pred HHHHHHHhCCceeecCCCC
Q psy9995 470 YILKDFVNGHLLYCQAPPG 488 (595)
Q Consensus 470 ~iLkD~~~GKL~~~~~PP~ 488 (595)
.+++||+.|+|+|+..|+.
T Consensus 280 ~~~~d~~~gklg~~~~~~~ 298 (322)
T COG1161 280 TILKDIRNGKLGWFSLEEP 298 (322)
T ss_pred HHHHHHHhCCcceeecCCc
Confidence 9999999999999988765
No 6
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=1.2e-39 Score=336.14 Aligned_cols=255 Identities=27% Similarity=0.356 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEe
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFS 238 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~S 238 (595)
...++|++++++.||+||+|+|||.|++++++.+++++. ++|+|+|+||+||+++.....|.+++++.+..++++|
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iS 84 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----NKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAIN 84 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----CCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 567899999999999999999999999999998888774 6899999999999988777889998876677889999
Q ss_pred cccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccC----
Q psy9995 239 ATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVN---- 314 (595)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~---- 314 (595)
|+++.+. ++|.+.+....+..
T Consensus 85 a~~~~gi-------------------------------------------------------~~L~~~i~~~~~~~~~~~ 109 (276)
T TIGR03596 85 AKKGKGV-------------------------------------------------------KKIIKAAKKLLKEKNEKL 109 (276)
T ss_pred CCCcccH-------------------------------------------------------HHHHHHHHHHHHHhhhhh
Confidence 9887551 12222221111100
Q ss_pred -CCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccch--hHHHH
Q psy9995 315 -IPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSK--ADMIL 391 (595)
Q Consensus 315 -~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk--~eli~ 391 (595)
........+++++||+||||||||||+|.+.+.+.|++.||+|++.|++.++..+.|+||||+++|.+.+.. ..+++
T Consensus 110 ~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~l~~ 189 (276)
T TIGR03596 110 KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPKFEDQEVGLKLAA 189 (276)
T ss_pred hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCcccCCCCchHHHHHHHH
Confidence 011123458999999999999999999999998999999999999999999889999999999999876543 34566
Q ss_pred hcCCchhhhhhhhhh----HHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcCccccCCCCCHHHH
Q psy9995 392 NGILPIDQMRDHVPA----VNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRS 467 (595)
Q Consensus 392 ~gil~id~lrd~~~~----v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~gG~pD~~rA 467 (595)
.|.++.+.+. .... +.++..+.+ ..+...|+++... .+..+||+.+|+++|++.+||+||..+|
T Consensus 190 ~g~i~~~~~~-~~~~~~~~~~~l~~~~~-~~l~~~y~i~~~~----------~~~~~~l~~~a~~~g~~~k~g~~D~~~a 257 (276)
T TIGR03596 190 TGAIKDEALD-LEDVALFLLEYLLEHYP-ERLKERYKLDELP----------EDIVELLEAIAKKRGCLLKGGELDLDRA 257 (276)
T ss_pred hCCcccccCC-hHHHHHHHHHHHHhhCH-HHHHHHhCcCCCC----------CCHHHHHHHHHHHhCccccCCccCHHHH
Confidence 7766444332 2222 223333333 5677789986321 1478999999999999999999999999
Q ss_pred HHHHHHHHHhCCceeec
Q psy9995 468 ARYILKDFVNGHLLYCQ 484 (595)
Q Consensus 468 Ar~iLkD~~~GKL~~~~ 484 (595)
|+.||+||++|||.++.
T Consensus 258 a~~~l~d~~~Gklg~~~ 274 (276)
T TIGR03596 258 AEILLNDFRKGKLGRIT 274 (276)
T ss_pred HHHHHHHHHcCCCCcee
Confidence 99999999999998664
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=8.2e-30 Score=271.69 Aligned_cols=217 Identities=25% Similarity=0.293 Sum_probs=171.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vie~ 171 (595)
..+.|-.|||+||||++|.|.++..+ .-.+|.+..|.|+||+|+.. +..+....++.|+..+++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 45778899999999999999988766 67889999999999999985 4456677889999999999
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCCc
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEGD 250 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~~ 250 (595)
||+||+|||++..++..+..+.++++ ..+||+|||+||+|-...+. ...+ |.++|. +++.+||.++.|..++
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~e~--~~~e-fyslG~g~~~~ISA~Hg~Gi~dL-- 156 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILR--RSKKPVILVVNKIDNLKAEE--LAYE-FYSLGFGEPVPISAEHGRGIGDL-- 156 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCCEEEEEEcccCchhhh--hHHH-HHhcCCCCceEeehhhccCHHHH--
Confidence 99999999999999999999999998 56799999999999873332 2233 446665 7899999998772110
Q ss_pred cchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCC-CCceEEEEee
Q psy9995 251 EELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMN-PDVMTIGLVG 329 (595)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~-~~~i~i~lvG 329 (595)
.+++++.+. ......... ...++|++||
T Consensus 157 -------------------------------------------------ld~v~~~l~--~~e~~~~~~~~~~ikiaiiG 185 (444)
T COG1160 157 -------------------------------------------------LDAVLELLP--PDEEEEEEEETDPIKIAIIG 185 (444)
T ss_pred -------------------------------------------------HHHHHhhcC--CcccccccccCCceEEEEEe
Confidence 122333321 010000011 2469999999
Q ss_pred cCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccCC
Q psy9995 330 YPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMPS 381 (595)
Q Consensus 330 ~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p~ 381 (595)
.||||||||+|+|++..++.||+.||+|++.-...+ +..+.++||.|+....
T Consensus 186 rPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ 240 (444)
T COG1160 186 RPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKG 240 (444)
T ss_pred CCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCccc
Confidence 999999999999999999999999999999765433 6789999999998655
No 8
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.96 E-value=1.2e-28 Score=232.93 Aligned_cols=156 Identities=37% Similarity=0.688 Sum_probs=126.6
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCC-CeEEEEecccC
Q psy9995 164 QLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVN-VAVAFFSATNI 242 (595)
Q Consensus 164 ql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~g-i~vi~~SA~~~ 242 (595)
|+|++++.+|+|++|+|+++|....+..+.+++.....++|+|+|+||+||+++++...|..++.+.. ..++++||+.+
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 57999999999999999999998888999999875444589999999999999888888999886643 23466888776
Q ss_pred CCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCCCc
Q psy9995 243 YDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDV 322 (595)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~~~ 322 (595)
.+ .++|++.+..+... .+ ....
T Consensus 81 ~~-------------------------------------------------------~~~L~~~l~~~~~~--~~-~~~~ 102 (157)
T cd01858 81 FG-------------------------------------------------------KGSLIQLLRQFSKL--HS-DKKQ 102 (157)
T ss_pred cc-------------------------------------------------------HHHHHHHHHHHHhh--hc-cccc
Confidence 54 23344444333211 00 1235
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGL 377 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl 377 (595)
++|+++|.||||||||||+|.+...+.|+++||+|++.|++.++.++.|+||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 7899999999999999999999999999999999999999999889999999996
No 9
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=1e-27 Score=222.84 Aligned_cols=141 Identities=71% Similarity=1.160 Sum_probs=127.2
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecc
Q psy9995 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSAT 240 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~ 240 (595)
+|++++++++++|+|++|+|+++|....+..+.+++.....++|+++|+||+||++++....|.+++++.+..++++||.
T Consensus 1 ~~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 1 VWRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred CHHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEec
Confidence 48999999999999999999999999888899999875434789999999999998888888999998888889999985
Q ss_pred cCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCC
Q psy9995 241 NIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNP 320 (595)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~ 320 (595)
++.
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (141)
T cd01857 81 KEN----------------------------------------------------------------------------- 83 (141)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 421
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
.+++++|.||||||||||+|++...+.++..||+|+|.+++.++.++.++||||+.+|
T Consensus 84 --~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 84 --ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred --cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCcCCC
Confidence 1589999999999999999999998899999999999999999889999999999987
No 10
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.95 E-value=4.4e-27 Score=226.58 Aligned_cols=172 Identities=33% Similarity=0.527 Sum_probs=126.2
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCCCCCCCccc
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEE 252 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~ 252 (595)
|+|++|+|||+|+.+.++.+.+++.....++|+|+|+||+||++++.+..|.++|.+....+.|.|+.......-.. ..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQ-KS 79 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhh-cc
Confidence 89999999999999999999988431145799999999999999999999999998876555566654322100000 00
Q ss_pred hhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCCCceEEEEeecCC
Q psy9995 253 LEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPN 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pn 332 (595)
.. .+ .....+......++.++|++.++.+... ......+++++||+||
T Consensus 80 ----------~~--------------~~-----~~~~~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~vG~pn 127 (172)
T cd04178 80 ----------VK--------------VE-----AASADLLRSSVCFGADCLLKLLKNYSRN---KDIKTSITVGVVGFPN 127 (172)
T ss_pred ----------cc--------------cc-----hhhhhhhhhccccCHHHHHHHHHHHhhc---cccccCcEEEEEcCCC
Confidence 00 00 0000111222344567777777654432 2234568999999999
Q ss_pred CCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCC
Q psy9995 333 VGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGL 377 (595)
Q Consensus 333 vGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl 377 (595)
||||||||+|++.+.+.|++.||+|+++|++.++.++.|+||||+
T Consensus 128 vGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 128 VGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred CCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 999999999999999999999999999999999989999999996
No 11
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.92 E-value=1.7e-24 Score=207.60 Aligned_cols=161 Identities=33% Similarity=0.456 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEe
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFS 238 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~S 238 (595)
...++++++.+++||+||+|+|++.|+...+..+..++. +++.|+|+||+||+++.....|.++++..+..++++|
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~----~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG----NKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc----CCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEE
Confidence 567899999999999999999999998876665555442 6899999999999877666778888877677889999
Q ss_pred cccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhc----ccC
Q psy9995 239 ATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFH----DVN 314 (595)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~----~~~ 314 (595)
|+++.+. ++|.+.+.... +..
T Consensus 83 a~~~~gi-------------------------------------------------------~~L~~~l~~~l~~~~~~~ 107 (171)
T cd01856 83 AKSGKGV-------------------------------------------------------KKLLKAAKKLLKDIEKLK 107 (171)
T ss_pred CCCcccH-------------------------------------------------------HHHHHHHHHHHHHHhhhh
Confidence 9887651 12222221110 000
Q ss_pred CCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 315 IPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 315 ~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
.....+..++++++|.||||||||+|+|++...+.+++.||+|+++|++.++..+.++||||+.
T Consensus 108 ~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 108 AKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred hcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 0112234578999999999999999999998888999999999999999888889999999984
No 12
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.92 E-value=3.1e-24 Score=202.13 Aligned_cols=155 Identities=38% Similarity=0.591 Sum_probs=124.7
Q ss_pred HHHHHHHHHhh-cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEec
Q psy9995 161 FWRQLWRVIER-SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSA 239 (595)
Q Consensus 161 ~~rql~~vie~-sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA 239 (595)
+|+++++.+.+ +|+||+|+|+++|....+..+..++. ..++|+|+|+||+|+++......|..+....+.+++++||
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa 78 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVL--ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSA 78 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHH--hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 48888877775 99999999999998877777777665 3478999999999998776666676555455678899999
Q ss_pred ccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCC
Q psy9995 240 TNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMN 319 (595)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~ 319 (595)
+++.+ .++|.+.+....+. .
T Consensus 79 ~~~~g-------------------------------------------------------i~~L~~~l~~~~~~-----~ 98 (156)
T cd01859 79 KERLG-------------------------------------------------------TKILRRTIKELAKI-----D 98 (156)
T ss_pred ccccc-------------------------------------------------------HHHHHHHHHHHHhh-----c
Confidence 88765 34455555443332 1
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGL 377 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl 377 (595)
....+++++|.|||||||++|.|.+.....+++++|+|+++|.+.++..+.++||||+
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 2346789999999999999999999888899999999999999888889999999996
No 13
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.92 E-value=4.2e-24 Score=201.60 Aligned_cols=149 Identities=37% Similarity=0.547 Sum_probs=114.4
Q ss_pred CeEEEEEeCCCCCCCCchHHH-HHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhC-CCeEEEEecccCCCCCCCCc
Q psy9995 173 DVIVQIVDARNPLLFRCEDLE-RYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSV-NVAVAFFSATNIYDDIPEGD 250 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le-~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~-gi~vi~~SA~~~~~~~~~~~ 250 (595)
|+||+|+|+++|..+.+..+. .++. ..++|+|+|+||+||+++++...|..++... +..++++||+++.+.....
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~- 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIK--EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE- 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHh--cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH-
Confidence 899999999999998888777 4444 4579999999999999888778888666544 5578999999876621100
Q ss_pred cchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHH----hhhhcccCCCCCCCCceEEE
Q psy9995 251 EELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISL----FKSFHDVNIPRMNPDVMTIG 326 (595)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~----~~~~~~~~~~~~~~~~i~i~ 326 (595)
+.+.+. ++.... ........+++
T Consensus 78 --------------------------------------------------~~i~~~~~~~~~~~~~---~~~~~~~~~~~ 104 (155)
T cd01849 78 --------------------------------------------------SAFTKQTNSNLKSYAK---DGKLKKSITVG 104 (155)
T ss_pred --------------------------------------------------HHHHHHhHHHHHHHHh---ccccccCcEEE
Confidence 001000 011100 11123457899
Q ss_pred EeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCC
Q psy9995 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGL 377 (595)
Q Consensus 327 lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl 377 (595)
++|+||||||||||+|++...+.++..||+|++.+++.++.++.|+||||+
T Consensus 105 ~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 105 VIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred EEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 999999999999999999998899999999999999999889999999996
No 14
>KOG2485|consensus
Probab=99.91 E-value=3.2e-24 Score=218.50 Aligned_cols=256 Identities=27% Similarity=0.359 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeE-EEE
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAV-AFF 237 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~v-i~~ 237 (595)
....|++...+..+|+||+|.|||.|++++++.+.+.+. .|+.|||+||+||+++.+.....++|+.++... ++.
T Consensus 34 akalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~ 109 (335)
T KOG2485|consen 34 AKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKL 109 (335)
T ss_pred HHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhhcccchhhh
Confidence 456788889999999999999999999999999988864 799999999999999777777788887664322 222
Q ss_pred ecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccC--HHHHHHHhhhhcccCC
Q psy9995 238 SATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLN--REELISLFKSFHDVNI 315 (595)
Q Consensus 238 SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~--~~eL~e~~~~~~~~~~ 315 (595)
++...... .+.+...++. .++|....
T Consensus 110 ~c~~~~~~--------------------------------------------~v~~l~~il~~~~~~l~r~i-------- 137 (335)
T KOG2485|consen 110 DCNKDCNK--------------------------------------------QVSPLLKILTILSEELVRFI-------- 137 (335)
T ss_pred hhhhhhhh--------------------------------------------ccccHHHHHHHHHHHHHHhh--------
Confidence 22211110 0000000110 11221111
Q ss_pred CCCCCCceEEEEeecCCCCcchHhhhhcC-----cceeEecCCCCCceeeEE-EEc--CCceEEEeCCCCccCCcccch-
Q psy9995 316 PRMNPDVMTIGLVGYPNVGKSSTINALLN-----AKKVSVSATPGKTKHFQT-LFV--DDELLLCDCPGLVMPSFVFSK- 386 (595)
Q Consensus 316 ~~~~~~~i~i~lvG~pnvGKSSliN~L~~-----~~kvsVs~tPG~TKh~Qt-i~~--~~~~~liDtPGl~~p~f~~tk- 386 (595)
+..+....+++||.||||||||||++.. .+.++|++.||+|+.++. +.+ .+.++++||||+..|+..+..
T Consensus 138 -rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 138 -RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred -cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHH
Confidence 1224568999999999999999999874 467899999999999886 444 567999999999999876543
Q ss_pred -hHHHHhcCCchhhhhhhhhhHHHHhhhcChh---HHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcCcccc----
Q psy9995 387 -ADMILNGILPIDQMRDHVPAVNMLCTLVPRH---VLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTS---- 458 (595)
Q Consensus 387 -~eli~~gil~id~lrd~~~~v~~l~~~i~~~---~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~---- 458 (595)
..+.++|.+. |.+-.....++++...++.+ .....++... .+. ...+..+..++.++....+
T Consensus 217 ~lKLAL~g~Vk-d~~V~~~~~adylL~~lN~~~~~~y~~~l~~~~-~~~--------dd~~~nl~~l~v~~~~~~k~s~f 286 (335)
T KOG2485|consen 217 GLKLALCGLVK-DHLVGEETIADYLLYLLNSHSDFSYVKDLKPGS-TPA--------DDIEQNLAVLAVRRTKNEKVSAF 286 (335)
T ss_pred hhhhhhccccc-ccccCHHHHHHHHHHHHhccCcchhHHHhccCC-Ccc--------ccHHHHHHHHHHHHHhcceeeEe
Confidence 3457777553 33333334444444433322 1122232221 111 1356677788887654322
Q ss_pred -CC------CCCHHHHHHHHHHHHHhCCce
Q psy9995 459 -NG------QPDNPRSARYILKDFVNGHLL 481 (595)
Q Consensus 459 -gG------~pD~~rAAr~iLkD~~~GKL~ 481 (595)
|. ++...++||.+++-|++|.|+
T Consensus 287 dg~~~~ei~~~~~ln~~e~~l~~~rsg~l~ 316 (335)
T KOG2485|consen 287 DGNNKLEIEQPNLLNLARFFLATFRSGLLG 316 (335)
T ss_pred cCCceeEEechHHHHHHHHHHHHHHhcccc
Confidence 21 356889999999999999997
No 15
>PRK12289 GTPase RsgA; Reviewed
Probab=99.90 E-value=2.1e-23 Score=221.64 Aligned_cols=163 Identities=24% Similarity=0.355 Sum_probs=135.2
Q ss_pred CCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHH
Q psy9995 148 DGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKY 226 (595)
Q Consensus 148 ~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~ 226 (595)
.|++....+|...+.|. .+.++|+|++|+|+.+|.. ....|++|+..+ ..+.|+|||+||+||+++.+...|.++
T Consensus 69 ~~~I~~vlpR~~~L~R~---~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~ 144 (352)
T PRK12289 69 RGAIAEVLPRKTELDRP---PVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDR 144 (352)
T ss_pred ceEEEEEeccccceech---hhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHH
Confidence 47778888888888776 5899999999999988753 334667777643 357899999999999988878899988
Q ss_pred HhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHH
Q psy9995 227 FNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISL 306 (595)
Q Consensus 227 ~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~ 306 (595)
|...|+.++++||.++.+ .++|.+.
T Consensus 145 ~~~~g~~v~~iSA~tg~G-------------------------------------------------------I~eL~~~ 169 (352)
T PRK12289 145 LQQWGYQPLFISVETGIG-------------------------------------------------------LEALLEQ 169 (352)
T ss_pred HHhcCCeEEEEEcCCCCC-------------------------------------------------------HHHHhhh
Confidence 888899999999988755 3455544
Q ss_pred hhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCC-------CceeeEEEEcCCceEEEeCCCCcc
Q psy9995 307 FKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG-------KTKHFQTLFVDDELLLCDCPGLVM 379 (595)
Q Consensus 307 ~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG-------~TKh~Qti~~~~~~~liDtPGl~~ 379 (595)
+. + ..++|+|.||||||||||+|++...+.|+++|| +|+|.+++.++.+.+|+|||||..
T Consensus 170 L~----~---------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~ 236 (352)
T PRK12289 170 LR----N---------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQ 236 (352)
T ss_pred hc----c---------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCccc
Confidence 42 1 137999999999999999999999999999999 899999999987789999999997
Q ss_pred CCc
Q psy9995 380 PSF 382 (595)
Q Consensus 380 p~f 382 (595)
+.+
T Consensus 237 ~~l 239 (352)
T PRK12289 237 PDL 239 (352)
T ss_pred ccc
Confidence 764
No 16
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.3e-23 Score=226.89 Aligned_cols=212 Identities=24% Similarity=0.289 Sum_probs=159.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-.+||+||||++|.|.+...+ ....|.+..+.|+||||+..........+.+++...++.+|+
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~ 81 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADV 81 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCE
Confidence 456689999999999999876532 345688999999999998765555567788889999999999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCCccch
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEGDEEL 253 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~~~~~ 253 (595)
||+|+|++.+++..+..+.++++. .++|+|+|+||+|+...+.. ..+ +.+.|. +++++||.++.+.
T Consensus 82 vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv-------- 148 (429)
T TIGR03594 82 ILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGI-------- 148 (429)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCCh--------
Confidence 999999999888777778888874 57899999999999765432 122 335566 7899999987651
Q ss_pred hhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccC--CCCCCCCceEEEEeecC
Q psy9995 254 EDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVN--IPRMNPDVMTIGLVGYP 331 (595)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~--~~~~~~~~i~i~lvG~p 331 (595)
++|++.+....+.. ........++|+++|.|
T Consensus 149 -----------------------------------------------~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~ 181 (429)
T TIGR03594 149 -----------------------------------------------GDLLDAILELLPEEEEEEEEEDGPIKIAIIGRP 181 (429)
T ss_pred -----------------------------------------------HHHHHHHHHhcCcccccccccCCceEEEEECCC
Confidence 22222222111100 00112345899999999
Q ss_pred CCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccC
Q psy9995 332 NVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMP 380 (595)
Q Consensus 332 nvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p 380 (595)
|||||||+|+|++...+.++..||+|++.....+ +..+.++||||+...
T Consensus 182 ~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 182 NVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred CCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence 9999999999999988899999999998754332 457899999998644
No 17
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.2e-22 Score=224.61 Aligned_cols=216 Identities=18% Similarity=0.162 Sum_probs=152.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-..+.|-.+||+||||++|.|.+...+ ....|.+..+.|+||+|+..........+.++....++.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 356788899999999999999975432 233577788999999998644434445667778888999
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCCc
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEGD 250 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~~ 250 (595)
+|+||+|+|++++.++.+..+..+++ ..++|+|+|+||+|+..... ...+.+ ..|. .++++||+++.+..++
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~--~~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~eL-- 190 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLR--RSGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGDL-- 190 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHHH--
Confidence 99999999999988776666777776 35799999999999864321 112222 3343 4678999988762110
Q ss_pred cchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCCCceEEEEeec
Q psy9995 251 EELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGY 330 (595)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~ 330 (595)
.+.|.+.+...... .......++|++||.
T Consensus 191 -------------------------------------------------~~~i~~~l~~~~~~--~~~~~~~~kI~iiG~ 219 (472)
T PRK03003 191 -------------------------------------------------LDAVLAALPEVPRV--GSASGGPRRVALVGK 219 (472)
T ss_pred -------------------------------------------------HHHHHhhccccccc--ccccccceEEEEECC
Confidence 01111111110000 000124589999999
Q ss_pred CCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCcc
Q psy9995 331 PNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVM 379 (595)
Q Consensus 331 pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~ 379 (595)
||||||||+|+|++...+.++.+||+|+++.. +.. +..+.|+||||+..
T Consensus 220 ~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 220 PNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred CCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 99999999999999887789999999998643 333 45688999999853
No 18
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.89 E-value=1.2e-22 Score=197.81 Aligned_cols=156 Identities=25% Similarity=0.294 Sum_probs=115.9
Q ss_pred hhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH----HHHHHHHH--Hh
Q psy9995 155 YEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK----QRCYWTKY--FN 228 (595)
Q Consensus 155 ~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~----~~~~w~~~--~~ 228 (595)
++.+..+...+...++++|+||+|+|++++.......+.. . ..++|+|+|+||+|+++.+ ....|... +.
T Consensus 18 ~~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 18 IPDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--F--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAA 93 (190)
T ss_pred CChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--h--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHh
Confidence 3444446777888899999999999999987655555522 1 3468999999999998543 23445411 12
Q ss_pred hCCC---eEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHH
Q psy9995 229 SVNV---AVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELIS 305 (595)
Q Consensus 229 ~~gi---~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e 305 (595)
..+. .++++||+++.+ .++|.+
T Consensus 94 ~~~~~~~~i~~vSA~~~~g-------------------------------------------------------i~eL~~ 118 (190)
T cd01855 94 GLGLKPKDVILISAKKGWG-------------------------------------------------------VEELIN 118 (190)
T ss_pred hcCCCcccEEEEECCCCCC-------------------------------------------------------HHHHHH
Confidence 2332 578899988765 345555
Q ss_pred HhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcc--------eeEecCCCCCceeeEEEEcCCceEEEeCCCC
Q psy9995 306 LFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAK--------KVSVSATPGKTKHFQTLFVDDELLLCDCPGL 377 (595)
Q Consensus 306 ~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~--------kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl 377 (595)
.+....+. ..++++||.||||||||||+|++.. .+.+|..||+|++.|.+.++..+.++||||+
T Consensus 119 ~l~~~l~~--------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 119 AIKKLAKK--------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred HHHHHhhc--------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 55443321 3579999999999999999999853 3688999999999999999878999999996
No 19
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=2.6e-22 Score=219.30 Aligned_cols=214 Identities=23% Similarity=0.255 Sum_probs=155.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.|-.+||+||||++|.|.+...+ ....|.+..+.|+||||+..........+.++...++..+|
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad 82 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEAD 82 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCC
Confidence 3556789999999999999876532 34578888899999999875322233455667778899999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCCccc
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEGDEE 252 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~~~~ 252 (595)
+||+|+|++++.+..+..+..+++. .++|+|+|+||+|+...+. ...++ ...|. .++++||+++.+.
T Consensus 83 ~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~--~~~~~-~~lg~~~~~~iSa~~g~gv------- 150 (435)
T PRK00093 83 VILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA--DAYEF-YSLGLGEPYPISAEHGRGI------- 150 (435)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh--hHHHH-HhcCCCCCEEEEeeCCCCH-------
Confidence 9999999999887777777788874 4789999999999765321 22222 34555 4789999887651
Q ss_pred hhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhccc-CCCCCCCCceEEEEeecC
Q psy9995 253 LEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDV-NIPRMNPDVMTIGLVGYP 331 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~-~~~~~~~~~i~i~lvG~p 331 (595)
++|++.+...... .........++|+++|.|
T Consensus 151 ------------------------------------------------~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~ 182 (435)
T PRK00093 151 ------------------------------------------------GDLLDAILEELPEEEEEDEEDEPIKIAIIGRP 182 (435)
T ss_pred ------------------------------------------------HHHHHHHHhhCCccccccccccceEEEEECCC
Confidence 1222222110000 000012346899999999
Q ss_pred CCCcchHhhhhcCcceeEecCCCCCceeeEEEE---cCCceEEEeCCCCccCC
Q psy9995 332 NVGKSSTINALLNAKKVSVSATPGKTKHFQTLF---VDDELLLCDCPGLVMPS 381 (595)
Q Consensus 332 nvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~---~~~~~~liDtPGl~~p~ 381 (595)
|||||||+|+|++...+.++..||+|++..... -+..+.|+||||+....
T Consensus 183 n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~ 235 (435)
T PRK00093 183 NVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKG 235 (435)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCc
Confidence 999999999999999999999999999875432 25578999999997554
No 20
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=6.4e-22 Score=228.65 Aligned_cols=216 Identities=19% Similarity=0.186 Sum_probs=152.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.|-.+||+|||+++|.|.+...+ ...+|.+..+.|+||+|+..........+.+++...++.+|
T Consensus 277 ~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD 356 (712)
T PRK09518 277 VVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLAD 356 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCC
Confidence 4677789999999999999875432 13468888999999999875333344567888889999999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCCccc
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEGDEE 252 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~~~~ 252 (595)
+||+|+|++.++...+..+..+++ ..++|+|+|+||+|+...... ..+++ ..|. .++++||+++.|..++
T Consensus 357 ~iL~VvDa~~~~~~~d~~i~~~Lr--~~~~pvIlV~NK~D~~~~~~~--~~~~~-~lg~~~~~~iSA~~g~GI~eL---- 427 (712)
T PRK09518 357 AVVFVVDGQVGLTSTDERIVRMLR--RAGKPVVLAVNKIDDQASEYD--AAEFW-KLGLGEPYPISAMHGRGVGDL---- 427 (712)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hcCCCEEEEEECcccccchhh--HHHHH-HcCCCCeEEEECCCCCCchHH----
Confidence 999999999887766666777776 468999999999998653221 12222 3343 4678999998772110
Q ss_pred hhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCCCceEEEEeecCC
Q psy9995 253 LEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPN 332 (595)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pn 332 (595)
.+.|.+.+.........-.....++|+++|.||
T Consensus 428 -----------------------------------------------l~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~n 460 (712)
T PRK09518 428 -----------------------------------------------LDEALDSLKVAEKTSGFLTPSGLRRVALVGRPN 460 (712)
T ss_pred -----------------------------------------------HHHHHHhcccccccccccCCCCCcEEEEECCCC
Confidence 011111111000000000012347999999999
Q ss_pred CCcchHhhhhcCcceeEecCCCCCceeeEEE--E-cCCceEEEeCCCCcc
Q psy9995 333 VGKSSTINALLNAKKVSVSATPGKTKHFQTL--F-VDDELLLCDCPGLVM 379 (595)
Q Consensus 333 vGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~-~~~~~~liDtPGl~~ 379 (595)
||||||+|+|++.....|+..||+|++.... . -+..+.++||||+..
T Consensus 461 vGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 461 VGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 9999999999998877889999999997532 2 255788999999863
No 21
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.87 E-value=9.5e-22 Score=199.77 Aligned_cols=163 Identities=25% Similarity=0.280 Sum_probs=126.3
Q ss_pred CCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHH-HHHH
Q psy9995 147 EDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQR-CYWT 224 (595)
Q Consensus 147 T~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~-~~w~ 224 (595)
+.|++....||-..+.|. .+.++|.+++|+|+.+|..+. ..+++|+..+ ..+.+++||+||+||.+..+. ..|.
T Consensus 15 ~~~~i~~i~eR~~~L~r~---~~~n~D~viiV~d~~~p~~s~-~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~ 90 (245)
T TIGR00157 15 VKVYGGAIAERKNELTRP---IVANIDQIVIVSSAVLPELSL-NQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQL 90 (245)
T ss_pred CceEEEEEecccceEECc---ccccCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHH
Confidence 347777778887666665 688999999999999988543 3467776544 357899999999999865443 4788
Q ss_pred HHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHH
Q psy9995 225 KYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELI 304 (595)
Q Consensus 225 ~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~ 304 (595)
++|.+.|++++++||+++.+ .++|.
T Consensus 91 ~~~~~~g~~v~~~SAktg~g-------------------------------------------------------i~eLf 115 (245)
T TIGR00157 91 DIYRNIGYQVLMTSSKNQDG-------------------------------------------------------LKELI 115 (245)
T ss_pred HHHHHCCCeEEEEecCCchh-------------------------------------------------------HHHHH
Confidence 88877889999999988754 34554
Q ss_pred HHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCC-------CceeeEEEEcCCceEEEeCCCC
Q psy9995 305 SLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG-------KTKHFQTLFVDDELLLCDCPGL 377 (595)
Q Consensus 305 e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG-------~TKh~Qti~~~~~~~liDtPGl 377 (595)
+.+. . ..++++|.||||||||||+|++.....++..++ ||++.+++.+ .+..|+||||+
T Consensus 116 ~~l~---~----------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~ 181 (245)
T TIGR00157 116 EALQ---N----------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGF 181 (245)
T ss_pred hhhc---C----------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCc
Confidence 4432 1 257999999999999999999987777666553 8999999988 46799999999
Q ss_pred ccCCc
Q psy9995 378 VMPSF 382 (595)
Q Consensus 378 ~~p~f 382 (595)
....+
T Consensus 182 ~~~~l 186 (245)
T TIGR00157 182 NEFGL 186 (245)
T ss_pred cccCC
Confidence 87664
No 22
>PRK13796 GTPase YqeH; Provisional
Probab=99.85 E-value=1.5e-20 Score=201.30 Aligned_cols=148 Identities=28% Similarity=0.398 Sum_probs=113.9
Q ss_pred HHHHHhhcC-eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH----HHHHHHHHHH-hhCCC---eEE
Q psy9995 165 LWRVIERSD-VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR----KQRCYWTKYF-NSVNV---AVA 235 (595)
Q Consensus 165 l~~vie~sD-vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~----~~~~~w~~~~-~~~gi---~vi 235 (595)
+.+.+..+| +|++|+|+.++..+..+.|.+++ .++++++|+||+||++. +....|...+ +..|+ .++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 344455555 99999999998877777777665 37899999999999863 3456676654 44465 578
Q ss_pred EEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCC
Q psy9995 236 FFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNI 315 (595)
Q Consensus 236 ~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~ 315 (595)
++||+++.+ .++|++.+.....
T Consensus 138 ~vSAk~g~g-------------------------------------------------------I~eL~~~I~~~~~--- 159 (365)
T PRK13796 138 LISAQKGHG-------------------------------------------------------IDELLEAIEKYRE--- 159 (365)
T ss_pred EEECCCCCC-------------------------------------------------------HHHHHHHHHHhcC---
Confidence 899987654 4456665543322
Q ss_pred CCCCCCceEEEEeecCCCCcchHhhhhcCc-----ceeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNA-----KKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 316 ~~~~~~~i~i~lvG~pnvGKSSliN~L~~~-----~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
...+++||+||||||||||+|++. ..+.||..||+|++.+++.++.+..|+||||+..+
T Consensus 160 ------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 ------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHR 223 (365)
T ss_pred ------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcccc
Confidence 146899999999999999999854 35679999999999999999888999999999744
No 23
>PRK12288 GTPase RsgA; Reviewed
Probab=99.84 E-value=1.3e-20 Score=200.22 Aligned_cols=162 Identities=25% Similarity=0.218 Sum_probs=124.8
Q ss_pred CcccChhhhhHHHHHHH-----HHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHH---H
Q psy9995 149 GLVITPYEKNLDFWRQL-----WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRK---Q 219 (595)
Q Consensus 149 Gi~~t~~ern~e~~rql-----~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~---~ 219 (595)
|++....+|...+.|.. +-++.++|.+++|.+.. |.. ....+++|+..+ ..+.+.+||+||+||++.. .
T Consensus 93 ~~I~~il~R~n~L~R~~~~~~~q~iaANvD~vlIV~s~~-p~~-s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~ 170 (347)
T PRK12288 93 GVVEAVHPRTSVLTRPDYYDGVKPIAANIDQIVIVSAVL-PEL-SLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAF 170 (347)
T ss_pred eEEEEEecccceEECCCcccccceEEEEccEEEEEEeCC-CCC-CHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHH
Confidence 67777777766666532 33468899999888864 433 234577776544 3468999999999998754 3
Q ss_pred HHHHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccC
Q psy9995 220 RCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLN 299 (595)
Q Consensus 220 ~~~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 299 (595)
...|.++|...|++++++||+++.+
T Consensus 171 ~~~~~~~y~~~g~~v~~vSA~tg~G------------------------------------------------------- 195 (347)
T PRK12288 171 VNEQLDIYRNIGYRVLMVSSHTGEG------------------------------------------------------- 195 (347)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCcC-------------------------------------------------------
Confidence 5677888878899999999988765
Q ss_pred HHHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCC-------CceeeEEEEcCCceEEE
Q psy9995 300 REELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG-------KTKHFQTLFVDDELLLC 372 (595)
Q Consensus 300 ~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG-------~TKh~Qti~~~~~~~li 372 (595)
.++|.+.+. + ..++|||.||||||||||+|++...+.|+..++ ||++.+++.++.+..|+
T Consensus 196 ideL~~~L~----~---------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~li 262 (347)
T PRK12288 196 LEELEAALT----G---------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLI 262 (347)
T ss_pred HHHHHHHHh----h---------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCCEEE
Confidence 455666553 1 137899999999999999999999999999987 68899999998788899
Q ss_pred eCCCCccC
Q psy9995 373 DCPGLVMP 380 (595)
Q Consensus 373 DtPGl~~p 380 (595)
|||||.--
T Consensus 263 DTPGir~~ 270 (347)
T PRK12288 263 DSPGVREF 270 (347)
T ss_pred ECCCCCcc
Confidence 99999733
No 24
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.84 E-value=2.1e-20 Score=199.89 Aligned_cols=153 Identities=29% Similarity=0.378 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH----HHHHHHHH-HHhhCCC--
Q psy9995 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR----KQRCYWTK-YFNSVNV-- 232 (595)
Q Consensus 160 e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~----~~~~~w~~-~~~~~gi-- 232 (595)
++.+.+......+|+|++|+|+.++..+..+.+.+++. ++++++|+||+||+++ +....|.. ++++.|+
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~----~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~ 127 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG----GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKP 127 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC----CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 34444555567899999999999988887888877653 6899999999999864 34566753 4555665
Q ss_pred -eEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhc
Q psy9995 233 -AVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFH 311 (595)
Q Consensus 233 -~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~ 311 (595)
.++++||+++.+ .++|.+.+....
T Consensus 128 ~~i~~vSAk~g~g-------------------------------------------------------v~eL~~~l~~~~ 152 (360)
T TIGR03597 128 VDIILVSAKKGNG-------------------------------------------------------IDELLDKIKKAR 152 (360)
T ss_pred CcEEEecCCCCCC-------------------------------------------------------HHHHHHHHHHHh
Confidence 478899988765 455666655432
Q ss_pred ccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcc-----eeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 312 DVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAK-----KVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 312 ~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~-----kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
. ...+++||.||||||||||+|++.. .+.||..||+|++.+.+.++.++.|+||||+..+
T Consensus 153 ~---------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 153 N---------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred C---------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh
Confidence 1 1579999999999999999999853 4789999999999999999888999999999855
No 25
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.83 E-value=2.1e-20 Score=194.09 Aligned_cols=165 Identities=26% Similarity=0.275 Sum_probs=126.6
Q ss_pred CCcccChhhhhHHHHHHH-----HHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHH
Q psy9995 148 DGLVITPYEKNLDFWRQL-----WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQRC 221 (595)
Q Consensus 148 ~Gi~~t~~ern~e~~rql-----~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~ 221 (595)
.|++....+|...++|.. +-+++++|++++|+|+.+|. +....+++|+..+ ..++|+++|+||+||.++.+..
T Consensus 50 ~~~i~~i~~R~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~-~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~ 128 (287)
T cd01854 50 EGVIVRVLPRKNLLSRPAAGGREQVIAANVDQLVIVVSLNEPF-FNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEE 128 (287)
T ss_pred cEEEEEEECCCceEEccCCCCcceeEEEeCCEEEEEEEcCCCC-CCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHH
Confidence 477778888888777763 33588999999999999997 3344677776543 3578999999999998876656
Q ss_pred HHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHH
Q psy9995 222 YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNRE 301 (595)
Q Consensus 222 ~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 301 (595)
.|..++...|++++++||+++.+ .+
T Consensus 129 ~~~~~~~~~g~~v~~vSA~~g~g-------------------------------------------------------i~ 153 (287)
T cd01854 129 LELVEALALGYPVLAVSAKTGEG-------------------------------------------------------LD 153 (287)
T ss_pred HHHHHHHhCCCeEEEEECCCCcc-------------------------------------------------------HH
Confidence 67777767788999999987754 34
Q ss_pred HHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCC-------CCCceeeEEEEcCCceEEEeC
Q psy9995 302 ELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSAT-------PGKTKHFQTLFVDDELLLCDC 374 (595)
Q Consensus 302 eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~t-------PG~TKh~Qti~~~~~~~liDt 374 (595)
+|...+. + ..++++|.+|||||||||+|++.....++.. +++|++.+.+.++.+.+|+||
T Consensus 154 ~L~~~L~----~---------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDt 220 (287)
T cd01854 154 ELREYLK----G---------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDT 220 (287)
T ss_pred HHHhhhc----c---------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEEC
Confidence 4544442 1 3689999999999999999999766554433 348899999999877799999
Q ss_pred CCCccCC
Q psy9995 375 PGLVMPS 381 (595)
Q Consensus 375 PGl~~p~ 381 (595)
||+....
T Consensus 221 PG~~~~~ 227 (287)
T cd01854 221 PGFREFG 227 (287)
T ss_pred CCCCccC
Confidence 9996443
No 26
>PRK00098 GTPase RsgA; Reviewed
Probab=99.82 E-value=6.3e-20 Score=191.56 Aligned_cols=163 Identities=23% Similarity=0.274 Sum_probs=125.1
Q ss_pred CCcccChhhhhHHHHHHH----HHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCC-CHHHHH
Q psy9995 148 DGLVITPYEKNLDFWRQL----WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLL-TRKQRC 221 (595)
Q Consensus 148 ~Gi~~t~~ern~e~~rql----~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl-~~~~~~ 221 (595)
.|++....+|...++|.. +.+++++|++++|+|+.+|..+ ...+++++..+ ..++|++||+||+||. +.....
T Consensus 53 ~g~i~~i~~R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~-~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~ 131 (298)
T PRK00098 53 EGVILEIHERKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFS-TDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEAR 131 (298)
T ss_pred cEEEEEEeCCCceEECCCCccccceeecCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHH
Confidence 366766777777666653 2356899999999999988654 23456665433 4578999999999997 445566
Q ss_pred HHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHH
Q psy9995 222 YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNRE 301 (595)
Q Consensus 222 ~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 301 (595)
.|.++++..|++++++||+++.+ .+
T Consensus 132 ~~~~~~~~~g~~v~~vSA~~g~g-------------------------------------------------------i~ 156 (298)
T PRK00098 132 ELLALYRAIGYDVLELSAKEGEG-------------------------------------------------------LD 156 (298)
T ss_pred HHHHHHHHCCCeEEEEeCCCCcc-------------------------------------------------------HH
Confidence 78888877889999999987654 34
Q ss_pred HHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCC-------CceeeEEEEcCCceEEEeC
Q psy9995 302 ELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG-------KTKHFQTLFVDDELLLCDC 374 (595)
Q Consensus 302 eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG-------~TKh~Qti~~~~~~~liDt 374 (595)
+|.+.+. + ..++++|.||||||||||+|++.....++..++ +|++.+.+.++.+.+|+||
T Consensus 157 ~L~~~l~----g---------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~Dt 223 (298)
T PRK00098 157 ELKPLLA----G---------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDT 223 (298)
T ss_pred HHHhhcc----C---------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEEC
Confidence 5554432 2 368999999999999999999988777777765 7888899888888899999
Q ss_pred CCCcc
Q psy9995 375 PGLVM 379 (595)
Q Consensus 375 PGl~~ 379 (595)
||+.-
T Consensus 224 pG~~~ 228 (298)
T PRK00098 224 PGFSS 228 (298)
T ss_pred CCcCc
Confidence 99973
No 27
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=6e-18 Score=174.12 Aligned_cols=171 Identities=24% Similarity=0.305 Sum_probs=131.9
Q ss_pred CeeeEEEeCC--CcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCC
Q psy9995 139 RELNLLQEED--GLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLL 215 (595)
Q Consensus 139 g~~~~L~DT~--Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl 215 (595)
|..+.+.++. |++...++|...+.|. .+.++|-+++|+-+-+|.. ....|++||-.. ..+-..|||+||+||+
T Consensus 48 GD~V~~~~~~~~g~I~~i~~Rkn~L~Rp---~v~n~d~~iiIvs~~~P~~-~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~ 123 (301)
T COG1162 48 GDRVVFEDENNNGVIEKILPRKNVLIRP---PVANNDQAIIVVSLVDPDF-NTNLLDRYLVLAEAGGIEPVIVLNKIDLL 123 (301)
T ss_pred cCeEEEecCCCcceEEEEecccCceeCC---cccccceEEEEEeccCCCC-CHHHHHHHHHHHHHcCCcEEEEEEccccC
Confidence 4555566654 7888888888877777 5777999999999999974 556788887644 3566788999999999
Q ss_pred CHHHHH--HHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccC
Q psy9995 216 TRKQRC--YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKS 293 (595)
Q Consensus 216 ~~~~~~--~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (595)
+.+... ++...+...|++++++|++++.+
T Consensus 124 ~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~------------------------------------------------- 154 (301)
T COG1162 124 DDEEAAVKELLREYEDIGYPVLFVSAKNGDG------------------------------------------------- 154 (301)
T ss_pred cchHHHHHHHHHHHHhCCeeEEEecCcCccc-------------------------------------------------
Confidence 876655 57777888899999999987644
Q ss_pred CccccCHHHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCC---C----CCceeeEEEEcC
Q psy9995 294 SPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSAT---P----GKTKHFQTLFVD 366 (595)
Q Consensus 294 ~~~il~~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~t---P----G~TKh~Qti~~~ 366 (595)
.++|.+.++ + . ..+++|.+|||||||||+|.+.....|+.. - .||+|...+.++
T Consensus 155 ------~~~l~~~l~----~--------~-~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~ 215 (301)
T COG1162 155 ------LEELAELLA----G--------K-ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP 215 (301)
T ss_pred ------HHHHHHHhc----C--------C-eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC
Confidence 345666553 1 2 468999999999999999998766655544 2 278888889998
Q ss_pred CceEEEeCCCCccCC
Q psy9995 367 DELLLCDCPGLVMPS 381 (595)
Q Consensus 367 ~~~~liDtPGl~~p~ 381 (595)
.+..||||||+.-..
T Consensus 216 ~gG~iiDTPGf~~~~ 230 (301)
T COG1162 216 GGGWIIDTPGFRSLG 230 (301)
T ss_pred CCCEEEeCCCCCccC
Confidence 889999999997444
No 28
>PRK01889 GTPase RsgA; Reviewed
Probab=99.67 E-value=1.1e-16 Score=171.04 Aligned_cols=166 Identities=22% Similarity=0.251 Sum_probs=121.6
Q ss_pred CCCcccChhhhhHHHHHHHHH-------HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHH
Q psy9995 147 EDGLVITPYEKNLDFWRQLWR-------VIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 147 T~Gi~~t~~ern~e~~rql~~-------vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~ 218 (595)
.+|++....+|...+.|..+. +++++|.|++|+++. |. +....+++|+..+ ..+.+.+||+||+||+++.
T Consensus 81 ~~g~I~~i~pR~~~L~R~~~~~~~~~q~iaANvD~vliV~s~~-p~-~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~ 158 (356)
T PRK01889 81 KKARIVRLLPRRSLFSRKAAGTRSEEQLIAANVDTVFIVCSLN-HD-FNLRRIERYLALAWESGAEPVIVLTKADLCEDA 158 (356)
T ss_pred CceEEEEEECCCceEEcCCCCCCccceeEEEeCCEEEEEEecC-CC-CChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH
Confidence 478888888888888887653 368999999999996 43 2344778887643 3567889999999998753
Q ss_pred -HHHHHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccc
Q psy9995 219 -QRCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKL 297 (595)
Q Consensus 219 -~~~~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 297 (595)
....|...+ ..|++++++|++++.+
T Consensus 159 ~~~~~~~~~~-~~g~~Vi~vSa~~g~g----------------------------------------------------- 184 (356)
T PRK01889 159 EEKIAEVEAL-APGVPVLAVSALDGEG----------------------------------------------------- 184 (356)
T ss_pred HHHHHHHHHh-CCCCcEEEEECCCCcc-----------------------------------------------------
Confidence 222333334 4578999999987654
Q ss_pred cCHHHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCC-------CCceeeEEEEcCCceE
Q psy9995 298 LNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP-------GKTKHFQTLFVDDELL 370 (595)
Q Consensus 298 l~~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP-------G~TKh~Qti~~~~~~~ 370 (595)
.++|.+.+. ++ -+++++|.||||||||+|+|++.....++..+ .+|++.++..++.+..
T Consensus 185 --l~~L~~~L~---~g---------~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~ 250 (356)
T PRK01889 185 --LDVLAAWLS---GG---------KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGL 250 (356)
T ss_pred --HHHHHHHhh---cC---------CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCe
Confidence 345555543 22 36899999999999999999987666555443 2677778888877788
Q ss_pred EEeCCCCccCCc
Q psy9995 371 LCDCPGLVMPSF 382 (595)
Q Consensus 371 liDtPGl~~p~f 382 (595)
++||||+..+.+
T Consensus 251 l~DtpG~~~~~l 262 (356)
T PRK01889 251 LIDTPGMRELQL 262 (356)
T ss_pred ecCCCchhhhcc
Confidence 999999976654
No 29
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.57 E-value=4.2e-15 Score=159.89 Aligned_cols=134 Identities=22% Similarity=0.150 Sum_probs=112.0
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
..-.+-|-.|||+||||++|.|.+++|+ +.+..+|.+++|+||+|+++|....+..++++.|..++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 3346779999999999999999999998 77889999999999999999999999999999999999
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.||+|++|+|++.|+...+..+... +..++|+++|+||+||.++...... +. ..+..++.+|++++.|
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~~~~~---~~~~~~~i~v~NK~DL~~~~~~~~~-~~--~~~~~~i~iSa~t~~G 363 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLALIEL---LPKKKPIIVVLNKADLVSKIELESE-KL--ANGDAIISISAKTGEG 363 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHHHHHh---cccCCCEEEEEechhcccccccchh-hc--cCCCceEEEEecCccC
Confidence 9999999999999877666655552 2467999999999999886543222 11 2245689999998866
No 30
>COG1159 Era GTPase [General function prediction only]
Probab=99.51 E-value=6.7e-14 Score=143.25 Aligned_cols=138 Identities=15% Similarity=0.114 Sum_probs=112.5
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
..+...|-.|||+||||+.|.|.+.--+ ....-....+.|+||||++.+....+..+.+.+|..+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3467789999999999999999976543 12223355678999999999877888899999999999
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH-HHHHHHHHhhC--CCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ-RCYWTKYFNSV--NVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~--gi~vi~~SA~~~~~ 244 (595)
.+|+|++|+|+..++...+..+...++. .+.|+|+++||+|...+++ .....+++... ..+++++||+++.+
T Consensus 85 dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 85 DVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred cCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 9999999999999998888877777773 3579999999999998877 45666666554 23789999999876
No 31
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.38 E-value=4.5e-13 Score=143.97 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=108.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccCh--hh-hhHHHHHHHHHHH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITP--YE-KNLDFWRQLWRVI 169 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~--~e-rn~e~~rql~~vi 169 (595)
.++.|-.|||+||||+.|.|+++||. ...+|.+..+.|+||+|++-.. .+ .+..-.-...+++
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI 258 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAI 258 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHH
Confidence 56889999999999999999999997 4567889999999999997632 11 1111133456789
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--HHHHHHHHHHhhC-----CCeEEEEecccC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR--KQRCYWTKYFNSV-----NVAVAFFSATNI 242 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~--~~~~~w~~~~~~~-----gi~vi~~SA~~~ 242 (595)
++||+|++|+||..|++..+..+..++. +.+++++||+||.|++.. .....+.+.+..+ +.+++|+||+++
T Consensus 259 ~~a~vvllviDa~~~~~~qD~~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~ 336 (444)
T COG1160 259 ERADVVLLVIDATEGISEQDLRIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTG 336 (444)
T ss_pred hhcCEEEEEEECCCCchHHHHHHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCC
Confidence 9999999999999999988888888887 578999999999999886 4445554444332 348899999998
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 337 ~~ 338 (444)
T COG1160 337 QG 338 (444)
T ss_pred CC
Confidence 77
No 32
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.36 E-value=2.1e-12 Score=122.98 Aligned_cols=94 Identities=32% Similarity=0.331 Sum_probs=66.7
Q ss_pred HHHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCH
Q psy9995 221 CYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNR 300 (595)
Q Consensus 221 ~~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 300 (595)
++|.+.|++.|++++++|+.++.+ .
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g-------------------------------------------------------~ 26 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEG-------------------------------------------------------I 26 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTT-------------------------------------------------------H
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcC-------------------------------------------------------H
Confidence 468888999999999999986544 4
Q ss_pred HHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCC-----CC--CceeeEEEEcCCceEEEe
Q psy9995 301 EELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSAT-----PG--KTKHFQTLFVDDELLLCD 373 (595)
Q Consensus 301 ~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~t-----PG--~TKh~Qti~~~~~~~liD 373 (595)
++|.+.++. -+++++|.+|||||||||+|++.....++.. .| +|+|.+.+.++.+..|||
T Consensus 27 ~~l~~~l~~-------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iID 93 (161)
T PF03193_consen 27 EELKELLKG-------------KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIID 93 (161)
T ss_dssp HHHHHHHTT-------------SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEEC
T ss_pred HHHHHHhcC-------------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEE
Confidence 566666541 3689999999999999999999866554432 33 688899999999999999
Q ss_pred CCCCccCCc
Q psy9995 374 CPGLVMPSF 382 (595)
Q Consensus 374 tPGl~~p~f 382 (595)
|||+.-..+
T Consensus 94 TPGf~~~~l 102 (161)
T PF03193_consen 94 TPGFRSFGL 102 (161)
T ss_dssp SHHHHT--G
T ss_pred CCCCCcccc
Confidence 999975443
No 33
>PRK11058 GTPase HflX; Provisional
Probab=99.35 E-value=8.5e-13 Score=144.29 Aligned_cols=194 Identities=21% Similarity=0.262 Sum_probs=118.9
Q ss_pred cCeEEEEEeCCCCCCCC----chHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEE--------EEec
Q psy9995 172 SDVIVQIVDARNPLLFR----CEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVA--------FFSA 239 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~----~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi--------~~SA 239 (595)
++.+++..+..+|-++. ..+|..++. .....++|+| |-++|.|..++.+.+ +++|+ .|+.
T Consensus 42 ~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~---~~~~~~vi~~--~~lsp~q~~nle~~~---~~~v~DR~~lil~IF~~ 113 (426)
T PRK11058 42 LQVITGSRKAPHPKYFVGEGKAVEIAEAVK---ATGASVVLFD--HALSPAQERNLERLC---ECRVIDRTGLILDIFAQ 113 (426)
T ss_pred EEEEEEecCCCCCCeeecccHHHHHHHHHH---hcCCCEEEEC--CCCCHHHHHHHHHHH---CCeEecchhHHHHHHHH
Confidence 35566666666676653 233444444 2345688888 778999988887765 56655 3555
Q ss_pred ccCCCCCCCCccchhhhhhhccccccchhhhhhhhhh----hccccchhhhhhcc-ccCCccccCHHHHHHHhhhhcccC
Q psy9995 240 TNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEE----EEDDGQKVLENDLK-IKSSPKLLNREELISLFKSFHDVN 314 (595)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~il~~~eL~e~~~~~~~~~ 314 (595)
+..+.+.++|.+.++ +.+..+++...|..+++.. .+|+|+..++.+.. +.....-+ ..+|.++......++
T Consensus 114 rA~t~e~klqvelA~---l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~d~r~i~~ri~~l-~~~L~~~~~~r~~~r 189 (426)
T PRK11058 114 RARTHEGKLQVELAQ---LRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQI-LSRLERVEKQREQGR 189 (426)
T ss_pred hcCChHHHHHHHHHh---hhhhhhhhhccccchhhhcCCCCCCCCChhHhHHHHHHHHHHHHHH-HHHHHHHHHhHHHHH
Confidence 555554555555543 4555555555666666543 25678777765533 22222111 233433333222211
Q ss_pred CCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC--CceEEEeCCCCc
Q psy9995 315 IPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD--DELLLCDCPGLV 378 (595)
Q Consensus 315 ~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~--~~~~liDtPGl~ 378 (595)
..+...+..+|++||+||||||||+|+|++.. +.+++.||+|.+..+ +.++ ..++++||||+.
T Consensus 190 ~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~-~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~ 256 (426)
T PRK11058 190 RARIKADVPTVSLVGYTNAGKSTLFNRITEAR-VYAADQLFATLDPTLRRIDVADVGETVLADTVGFI 256 (426)
T ss_pred HHhhhcCCCEEEEECCCCCCHHHHHHHHhCCc-eeeccCCCCCcCCceEEEEeCCCCeEEEEecCccc
Confidence 01111234589999999999999999999876 558999999998765 3333 367899999984
No 34
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.33 E-value=1.6e-12 Score=138.85 Aligned_cols=193 Identities=24% Similarity=0.298 Sum_probs=111.5
Q ss_pred CeEEEEEeCCCCCCCC----chHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEE--------EEecc
Q psy9995 173 DVIVQIVDARNPLLFR----CEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVA--------FFSAT 240 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~----~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi--------~~SA~ 240 (595)
+.+++-.+..+|-++. ..+|..++.. ....++|+| |-++|.|..++.+.+ +.+|+ .|+.+
T Consensus 35 ~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~---~~~~~vi~~--~~l~p~q~~nl~~~~---~~~v~Dr~~lil~iF~~r 106 (351)
T TIGR03156 35 GTVTQKRSRPDPATYIGKGKVEEIAELVEE---LEADLVIFD--HELSPSQERNLEKAL---GCRVIDRTGLILDIFAQR 106 (351)
T ss_pred EEEEEecCCCCCCeEecccHHHHHHHHHHh---cCCCEEEEC--CCCCHHHHHHHHHHh---CCcccchHHHHHHHHHHh
Confidence 4455555555665543 3344444442 344588888 778888888887765 45444 34554
Q ss_pred cCCCCCCCCccchhhhhhhccccccchhhhhhhhhh----hccccchhhhhhcc-ccCCccccCHHHHHHHhhhhcccCC
Q psy9995 241 NIYDDIPEGDEELEDEVVSEESESDESEWEDISEEE----EEDDGQKVLENDLK-IKSSPKLLNREELISLFKSFHDVNI 315 (595)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~il~~~eL~e~~~~~~~~~~ 315 (595)
..+.+.++|.+.++ +.+..++....|..+++.. .++++++.++.+.. +......+ ..+|.++.+....+..
T Consensus 107 a~t~e~klqv~la~---l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l-~~~L~~~~~~~~~~r~ 182 (351)
T TIGR03156 107 ARTHEGKLQVELAQ---LKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQL-KKELEKVEKQRERQRR 182 (351)
T ss_pred ccChHHHHHHHHHh---ccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 44443333333322 2333333333343343322 23344443333322 22222222 3455555444333211
Q ss_pred CCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc--CCceEEEeCCCCc
Q psy9995 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV--DDELLLCDCPGLV 378 (595)
Q Consensus 316 ~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~--~~~~~liDtPGl~ 378 (595)
.+...+..+|++||+||||||||+|+|++.. +.+++.||+|.++.+ +.+ +..+.++||||++
T Consensus 183 ~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 183 RRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFI 248 (351)
T ss_pred hhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccc
Confidence 2223456899999999999999999999977 788999999998765 334 3478999999985
No 35
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.32 E-value=8.5e-12 Score=128.49 Aligned_cols=134 Identities=15% Similarity=0.057 Sum_probs=95.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHHH--------------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERDE--------------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~~--------------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.|-.+||+||||+.|.|.+..-.. .....+..+.|+||||+..........+.+.++..++.+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 35567899999999999999764221 1112334578999999876544444556778889999999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHh-hCCC-eEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFN-SVNV-AVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-~~gi-~vi~~SA~~~~~ 244 (595)
+|++|+|++.+.... ..+...+. ..++|+++|+||+|+..+.....+...+. ..+. +++++||+++.+
T Consensus 82 vvl~VvD~~~~~~~~-~~i~~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~g 151 (270)
T TIGR00436 82 LILFVVDSDQWNGDG-EFVLTKLQ--NLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDN 151 (270)
T ss_pred EEEEEEECCCCCchH-HHHHHHHH--hcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence 999999999876543 44444454 35789999999999987655444333332 2233 789999999877
No 36
>COG1159 Era GTPase [General function prediction only]
Probab=99.22 E-value=1e-11 Score=127.42 Aligned_cols=59 Identities=32% Similarity=0.616 Sum_probs=52.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee-eEEEEc--CCceEEEeCCCCccCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-FQTLFV--DDELLLCDCPGLVMPS 381 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh-~Qti~~--~~~~~liDtPGl~~p~ 381 (595)
.-|++||.||||||||+|+|+|.+...||+.|.+||| .+.+.. +.+++++||||+..|.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 4689999999999999999999999999999999999 455544 5689999999999886
No 37
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.22 E-value=1.7e-11 Score=116.37 Aligned_cols=56 Identities=43% Similarity=0.583 Sum_probs=44.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EE-cCCceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LF-VDDELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~-~~~~~~liDtPGl~~ 379 (595)
++|++||.||||||||+|+|+|.+ +.|++.||+|.+... +. .+..+.++|+||+.-
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ys 59 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYS 59 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCccc
Confidence 579999999999999999999988 899999999998654 33 357899999999864
No 38
>PRK15494 era GTPase Era; Provisional
Probab=99.19 E-value=8.2e-11 Score=125.29 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=99.5
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
...+.|-.+||+||||+.|.|.+..-+ ....+.+..+.|+||||++.........+.+.+|..+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~ 131 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHS 131 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhh
Confidence 357889999999999999999865432 123466777889999998754444455678889999999
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCC--CeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVN--VAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~g--i~vi~~SA~~~~~ 244 (595)
+|+||+|+|+.+++......+...++ ..+.|.|+|+||+|+.+. ......+++...+ ..++++||+++.+
T Consensus 132 aDvil~VvD~~~s~~~~~~~il~~l~--~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 132 ADLVLLIIDSLKSFDDITHNILDKLR--SLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH--hcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 99999999998766543333444444 235788999999999754 2334445554443 4688999998876
No 39
>PRK00089 era GTPase Era; Reviewed
Probab=99.17 E-value=1.7e-10 Score=119.89 Aligned_cols=137 Identities=16% Similarity=0.174 Sum_probs=100.0
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.+.+.|-.+||.||||+.|.|.+..-+ ......+..+.|+||||+.......+..+.+..+..+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 355778899999999999999865422 011123456789999998765544455567778889999
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC-CHHHHHHHHHHHhhC--CCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL-TRKQRCYWTKYFNSV--NVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl-~~~~~~~w~~~~~~~--gi~vi~~SA~~~~~ 244 (595)
+|+|++|+|+.+++......+...+. ..++|+++|+||+|++ +..+...+.+.+.+. ..+++.+||+++.+
T Consensus 85 ~D~il~vvd~~~~~~~~~~~i~~~l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 85 VDLVLFVVDADEKIGPGDEFILEKLK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred CCEEEEEEeCCCCCChhHHHHHHHHh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 99999999999876655555555554 3468999999999999 555555555555442 34788999998866
No 40
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=3.6e-11 Score=117.39 Aligned_cols=61 Identities=48% Similarity=0.606 Sum_probs=55.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcCCceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~ 381 (595)
...-|+++|.+|||||||||+|++.+ -+.||.|||.|+..-.+.+++.+.++|-||.-+-+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk 84 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK 84 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence 34679999999999999999999966 48999999999999999999999999999987655
No 41
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.15 E-value=3.4e-10 Score=104.53 Aligned_cols=128 Identities=22% Similarity=0.272 Sum_probs=94.4
Q ss_pred CCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 112 PRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 112 prRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
-..|+.|||++.+.|...... ....+.+..+.++||||+..........++++....+..+|++++
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 82 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILF 82 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEE
Confidence 357899999999999864311 123455677889999998654333445566777778899999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
|+|++++.......+.++++. .+.|+++|+||+|+...... ...+...+. +++++|++++.+
T Consensus 83 v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 83 VVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred EEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCC
Confidence 999999887777777777763 46899999999999876544 222334455 788999988765
No 42
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.12 E-value=7.7e-11 Score=105.30 Aligned_cols=58 Identities=36% Similarity=0.558 Sum_probs=49.6
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCccCC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVMPS 381 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~p~ 381 (595)
+|+++|.||||||||||+|++.+...++..||+|++.+. +.+ +..+.++||||+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 589999999999999999999878899999999999854 233 4567999999987654
No 43
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.12 E-value=7.4e-11 Score=127.38 Aligned_cols=60 Identities=30% Similarity=0.439 Sum_probs=53.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~~~~liDtPGl~~p 380 (595)
..++++++|.||||||||+|+|+++.++.|++.|||||++-.- .+ +-.+.|+||.|+...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet 278 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET 278 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence 4589999999999999999999999999999999999998653 34 457899999999843
No 44
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.12 E-value=4e-10 Score=120.52 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=92.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhh-cCeeeEEEeCCCcccC-hhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQW-RRELNLLQEEDGLVIT-PYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~w-rg~~~~L~DT~Gi~~t-~~ern~e~~rql~~vie~ 171 (595)
..+.|-..||+||||++|.|.+.+-. ....+ .+..+.|.||+|++.. +... .+-++.++..+..
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~l-ie~f~~tle~~~~ 268 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHEL-VAAFRATLEEVRE 268 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHH-HHHHHHHHHHHHh
Confidence 56788899999999999999986521 11234 5678899999998543 2222 2335666778999
Q ss_pred cCeEEEEEeCCCCCCCCc-hHHHHHHHHhC-CCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRC-EDLERYVKEVS-PHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~-~~Le~~lk~v~-~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+||+|+|+++|..... ..+...+..+. .++|+|+|+||+|+.+......+ .....+++++||+++.|
T Consensus 269 ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~----~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 269 ADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERL----EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHH----HhCCCCEEEEEccCCCC
Confidence 999999999999875432 11234455442 36899999999999875443222 12234688999998876
No 45
>COG2262 HflX GTPases [General function prediction only]
Probab=99.12 E-value=1.3e-10 Score=123.67 Aligned_cols=194 Identities=23% Similarity=0.235 Sum_probs=123.2
Q ss_pred cCeEEEEEeCCCCCCCCc----hHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEE--------EEec
Q psy9995 172 SDVIVQIVDARNPLLFRC----EDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVA--------FFSA 239 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~----~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi--------~~SA 239 (595)
++.+.+..+.-+|-++.- .+|...++ ....-++|+| |-++|.|..+..+.+ |.+|| .|.-
T Consensus 37 ~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~---~~~ad~VIf~--~~LsP~Q~~NLe~~l---~~kVIDRt~LILdIFa~ 108 (411)
T COG2262 37 VEVVTQKRERPDPKTYIGSGKLEEIAEAVE---ETGADLVIFD--HELSPSQLRNLEKEL---GVKVIDRTQLILDIFAQ 108 (411)
T ss_pred eeeEEEeccCCCcceecCcchHHHHHHHHH---hcCCCEEEEC--CcCCHHHHHHHHHHH---CCEEEehHhHHHHHHHH
Confidence 355666666667766532 33434443 3445678888 778888887777665 66665 3444
Q ss_pred ccCCCCCCCCccchhhhhhhccccccchhhhhhhhh----hhccccchhhhhhcc-ccCCccccCHHHHHHHhhhhcccC
Q psy9995 240 TNIYDDIPEGDEELEDEVVSEESESDESEWEDISEE----EEEDDGQKVLENDLK-IKSSPKLLNREELISLFKSFHDVN 314 (595)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~il~~~eL~e~~~~~~~~~ 314 (595)
+....+.++|.+.++ +.+..+++...|..+++. +.+|+||+.++.+++ +...+.-+ ..+|..+-+......
T Consensus 109 RA~S~EgkLQVeLAq---L~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~i-~~eLe~v~~~R~~~R 184 (411)
T COG2262 109 RARSREGKLQVELAQ---LRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAKL-KRELENVEKAREPRR 184 (411)
T ss_pred HhccchhhhhhhHHh---hhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 444445556666553 455555666667766633 336788888877643 44443333 345554443322221
Q ss_pred CCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec--CCceEEEeCCCCc
Q psy9995 315 IPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV--DDELLLCDCPGLV 378 (595)
Q Consensus 315 ~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~--~~~~~liDtPGl~ 378 (595)
..+...+...|++|||+|+|||||+|+|++.. +-+.+....|-+..+. .+ +..++|-||-||+
T Consensus 185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI 251 (411)
T COG2262 185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFI 251 (411)
T ss_pred hhhcccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCc
Confidence 13444667899999999999999999999655 6777777777775543 33 3579999999998
No 46
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.11 E-value=6.3e-12 Score=119.36 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=86.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vie~sDv 174 (595)
+.+-.+||.||||++|+|.+.... ....+.+..+.|+|+||+.. .+......+++.... .+..|+
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~D~ 81 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKPDL 81 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSSSE
T ss_pred EEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCCCE
Confidence 345579999999999999988733 34556678899999999643 333333444444322 478999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|+.|+||.+. .++-.+...+. +.++|+|+|+||+|++.... .+.+.+.+ |++++++||+++.+
T Consensus 82 ii~VvDa~~l--~r~l~l~~ql~--e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L---g~pvi~~sa~~~~g 148 (156)
T PF02421_consen 82 IIVVVDATNL--ERNLYLTLQLL--ELGIPVVVVLNKMDEAERKGIEIDAEKLSERL---GVPVIPVSARTGEG 148 (156)
T ss_dssp EEEEEEGGGH--HHHHHHHHHHH--HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH---TS-EEEEBTTTTBT
T ss_pred EEEECCCCCH--HHHHHHHHHHH--HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh---CCCEEEEEeCCCcC
Confidence 9999999863 34444444444 35799999999999976542 23444433 88999999999876
No 47
>KOG1191|consensus
Probab=99.08 E-value=1e-10 Score=126.18 Aligned_cols=140 Identities=19% Similarity=0.153 Sum_probs=106.6
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVI 169 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vi 169 (595)
....+.|-.|||+|||++.|+|.+++|. +-.+.+|.++.|.||+|++. +....+.+.+++..+.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 4467889999999999999999999986 55569999999999999998 66677778899999999
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhC----------CCCcEEEEEeCCCCCCHHHHHHH--HHHHhhCC----Ce
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVS----------PHKRNMILLNKADLLTRKQRCYW--TKYFNSVN----VA 233 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~----------~~K~~ILVlNK~DLl~~~~~~~w--~~~~~~~g----i~ 233 (595)
++||+|++|+||-.-.+..+-.+.+.+.... ..++.|++.||+|+.++-....| ..|....| ..
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i 426 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPI 426 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccce
Confidence 9999999999996666666666666665432 13788999999999887222222 22332222 23
Q ss_pred EEEEecccCCC
Q psy9995 234 VAFFSATNIYD 244 (595)
Q Consensus 234 vi~~SA~~~~~ 244 (595)
++++|+.++++
T Consensus 427 ~~~vs~~tkeg 437 (531)
T KOG1191|consen 427 VVEVSCTTKEG 437 (531)
T ss_pred EEEeeechhhh
Confidence 45577777665
No 48
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.05 E-value=1.5e-09 Score=101.05 Aligned_cols=127 Identities=16% Similarity=0.171 Sum_probs=84.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH----------------Hhhhhc-CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD----------------EFLQWR-RELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~----------------~f~~wr-g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
+.|-.+|+.|||++.+.|.+.... ....|. +..+.++||||.. .+.+.+...+..
T Consensus 3 i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~--------~~~~~~~~~~~~ 74 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE--------KFIKNMLAGAGG 74 (164)
T ss_pred EEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH--------HHHHHHHhhhhc
Confidence 456789999999999999753211 122344 6678899999952 234455567889
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHhh---CCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFNS---VNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~~---~gi~vi~~SA~~~~~ 244 (595)
+|++++|+|++++...........+.. ...+|+|+|+||+|+.+... ...+.+.+.. .+.+++++||+++.+
T Consensus 75 ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 75 IDLVLLVVAADEGIMPQTREHLEILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred CCEEEEEEECCCCccHhHHHHHHHHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 999999999987543222222223332 22358999999999987532 2344555554 356889999988765
No 49
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.05 E-value=5.4e-10 Score=122.42 Aligned_cols=136 Identities=19% Similarity=0.195 Sum_probs=101.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh-hhhHH--HHHHHHHHH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY-EKNLD--FWRQLWRVI 169 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e--~~rql~~vi 169 (595)
-.+.|-.+||.||||+.|.|.+.++. ....+.+..+.|+||||+..... ....+ ......+.+
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~ 253 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAI 253 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 45778899999999999999987763 23346778889999999865321 11111 123445678
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhC-----CCeEEEEecccCCC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSV-----NVAVAFFSATNIYD 244 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~-----gi~vi~~SA~~~~~ 244 (595)
..+|++|+|+|+..+.+..+..+..++. ..++|+|+|+||+|+.+.+....+.+++... +.+++++||+++.+
T Consensus 254 ~~ad~~ilViD~~~~~~~~~~~i~~~~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~g 331 (435)
T PRK00093 254 ERADVVLLVIDATEGITEQDLRIAGLAL--EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQG 331 (435)
T ss_pred HHCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCC
Confidence 9999999999999998876666666655 3578999999999999766655665554332 45889999999876
No 50
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.04 E-value=1.2e-09 Score=121.28 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=94.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh-hhhHHHHHHH--HHHH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY-EKNLDFWRQL--WRVI 169 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e~~rql--~~vi 169 (595)
..+.|-.+||+||||+.|.|.+.++. ...++.+..+.|+||||+..... ....+....+ ...+
T Consensus 212 ~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i 291 (472)
T PRK03003 212 RRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAI 291 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHH
Confidence 46777889999999999999988763 12346788889999999854211 1112333332 3467
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH----HHHHHHhhC-CCeEEEEecccCCC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC----YWTKYFNSV-NVAVAFFSATNIYD 244 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~----~w~~~~~~~-gi~vi~~SA~~~~~ 244 (595)
..+|++|+|+|+.++.++.+..+...+. ..++|+|||+||+||....... .+...+... ..+++++||+++.+
T Consensus 292 ~~ad~vilV~Da~~~~s~~~~~~~~~~~--~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~g 369 (472)
T PRK03003 292 EAAEVAVVLIDASEPISEQDQRVLSMVI--EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRA 369 (472)
T ss_pred hcCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCC
Confidence 8999999999999988765555544444 3578999999999998643222 222223222 35789999999876
No 51
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.04 E-value=4e-10 Score=106.08 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=90.2
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCe-eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRE-LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~-~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-.+|+.||||+.+.|.+.+.. .+..+.+. .+.|.||||+...... ...+++..++.+..+|+
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE-GKGLGHRFLRHIERTRL 81 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc-cCCchHHHHHHHHhCCE
Confidence 446679999999999999864321 12344555 7889999998543221 12334556667789999
Q ss_pred EEEEEeCCCC-CCCCc-hHHHHHHHHhC---CCCcEEEEEeCCCCCCHHHHHHHHHHHhhC--CCeEEEEecccCCC
Q psy9995 175 IVQIVDARNP-LLFRC-EDLERYVKEVS---PHKRNMILLNKADLLTRKQRCYWTKYFNSV--NVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~P-l~~~~-~~Le~~lk~v~---~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~--gi~vi~~SA~~~~~ 244 (595)
+++|+|+.++ ..+.. ..+.+.+.... ..+|+++|+||+|+.+......|...+... +..++.+||+.+.+
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999987 33211 11222222221 368999999999998876666666544333 56789999998766
No 52
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.02 E-value=9.2e-10 Score=121.50 Aligned_cols=129 Identities=24% Similarity=0.196 Sum_probs=95.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
...+.|-..||.||||++|.|.+.+++ ....|.+..+.+.||+|+..+.........+..+..+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 346788999999999999999987653 124567888999999998764444444456777888999
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.+|.++.+. . .+.. ..++|+++|+||+|+.+..... ...+.+++.+||+++.+
T Consensus 295 aD~il~VvD~s~~~s~~~~--~-~l~~-~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDD--E-ILEE-LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEG 357 (449)
T ss_pred CCEEEEEecCCCCCChhHH--H-HHHh-cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCC
Confidence 9999999999988765432 2 2222 3478999999999997654322 22345789999998765
No 53
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.02 E-value=2.4e-09 Score=98.82 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=97.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+.+-..|+.||+|+.|.+.+.+-. ....+.+..+.++||||+..........+.+.....+..+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDV 83 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhC
Confidence 45677889999999999999875422 1122334567799999986654333333444556678899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC-CHHHHHHHHHHHhhCC--CeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL-TRKQRCYWTKYFNSVN--VAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl-~~~~~~~w~~~~~~~g--i~vi~~SA~~~~~ 244 (595)
|++++|+|+.+|.......+...+.. .+.|.++|+||+|+. .......+..++.... .+++.+|++.+.+
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 99999999999865555555555542 357999999999998 5666677777776654 5788899987665
No 54
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.02 E-value=1.1e-09 Score=116.36 Aligned_cols=137 Identities=18% Similarity=0.192 Sum_probs=93.1
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhh-cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQW-RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~w-rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
.-..+.|-.+||+||||+++.|....-. ....| .+..+.+.|+||++.... .+..+..+.++.++
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~-~~~gLg~~flrhie 235 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS-EGAGLGHRFLKHIE 235 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC-ccccHHHHHHHHhh
Confidence 3356778899999999999999864311 22335 345688999999975332 22234567777899
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhC------CCCcEEEEEeCCCCCCHHHHH--HHHHHHhhCCCeEEEEecccC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVS------PHKRNMILLNKADLLTRKQRC--YWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~------~~K~~ILVlNK~DLl~~~~~~--~w~~~~~~~gi~vi~~SA~~~ 242 (595)
++|++|+|+|+.++..+ .++..+..++. .++|.|||+||+|+.+..... .+..++...+.+++++||+++
T Consensus 236 ~a~vlI~ViD~s~~~s~--e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg 313 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPV--EDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTG 313 (335)
T ss_pred hcCEEEEEEcCCCCCCH--HHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 99999999999876422 23333333331 368999999999997654322 222233444678999999987
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 314 ~G 315 (335)
T PRK12299 314 EG 315 (335)
T ss_pred CC
Confidence 65
No 55
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.01 E-value=4.8e-10 Score=116.25 Aligned_cols=67 Identities=37% Similarity=0.521 Sum_probs=57.0
Q ss_pred CCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccCCcc
Q psy9995 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMPSFV 383 (595)
Q Consensus 316 ~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p~f~ 383 (595)
+..++...+|.+.||||||||||+++|++.+ +.|.+.|.|||.++.-+. ...+++||||||...++.
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ 231 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLE 231 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChH
Confidence 4456667899999999999999999999765 899999999999887655 347899999999977654
No 56
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.00 E-value=3.7e-09 Score=103.56 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=94.8
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCe-eeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRE-LNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~-~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
...+.|-..|+.||||+.+.+.+.+-. ....+.+. .+.++||+|+.........+.++..+..+..
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 120 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAE 120 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhc
Confidence 357788899999999999999987521 01234444 7889999998653222223345556666789
Q ss_pred cCeEEEEEeCCCCCCCCch-HHHHHHHHhC-CCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCE-DLERYVKEVS-PHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~-~Le~~lk~v~-~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++++|+|+++|..+... .+..++..+. .++|+++|+||+|+.+..... ..+...+.+++++||+++.+
T Consensus 121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCC
Confidence 9999999999988765432 2334444332 357999999999998765443 23334456889999998876
No 57
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.00 E-value=1.1e-09 Score=119.75 Aligned_cols=135 Identities=22% Similarity=0.233 Sum_probs=97.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh-hhhHH--HHHHHHHHHh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY-EKNLD--FWRQLWRVIE 170 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e--~~rql~~vie 170 (595)
.+.|-.+|+.|||++.|.|...++. ....+.+..+.|+||||+..... ....+ ...+....+.
T Consensus 174 ~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~ 253 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIE 253 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHH
Confidence 4778899999999999999987653 22346677889999999864321 11112 2234456789
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC-CHHHHHHHHHHHhhC-----CCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL-TRKQRCYWTKYFNSV-----NVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl-~~~~~~~w~~~~~~~-----gi~vi~~SA~~~~~ 244 (595)
.+|++|+|+|+.++.+..+..+..++. ..++|+|+|+||+|++ +......+.+.+... +.+++++||+++.+
T Consensus 254 ~ad~~ilV~D~~~~~~~~~~~~~~~~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~ 331 (429)
T TIGR03594 254 RADVVLLVLDATEGITEQDLRIAGLIL--EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQG 331 (429)
T ss_pred hCCEEEEEEECCCCccHHHHHHHHHHH--HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCC
Confidence 999999999999998766665655554 3578999999999998 554444544444322 46899999999876
No 58
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=1.6e-09 Score=120.09 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=93.2
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.-..+.|-.+||+||||++|.|....-. ...++.+..+.|.||||++...- ....+-.+.++.+++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-~g~gLg~~fLrhier 236 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-EGKGLGLDFLRHIER 236 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccc-hhhHHHHHHHHHHHh
Confidence 3356778899999999999999864221 12345667889999999975322 122233456677899
Q ss_pred cCeEEEEEeCCC------CCCCC---chHHHHHHHH--------hCCCCcEEEEEeCCCCCCHHHHHHH-HHHHhhCCCe
Q psy9995 172 SDVIVQIVDARN------PLLFR---CEDLERYVKE--------VSPHKRNMILLNKADLLTRKQRCYW-TKYFNSVNVA 233 (595)
Q Consensus 172 sDvVl~VvDAR~------Pl~~~---~~~Le~~lk~--------v~~~K~~ILVlNK~DLl~~~~~~~w-~~~~~~~gi~ 233 (595)
+|+||+|+|+.+ |+... ..+|..|... --..+|.|||+||+|+........+ ...+...+.+
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~ 316 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWP 316 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCe
Confidence 999999999964 32211 1123333320 0136899999999999765444333 3356566789
Q ss_pred EEEEecccCCC
Q psy9995 234 VAFFSATNIYD 244 (595)
Q Consensus 234 vi~~SA~~~~~ 244 (595)
++++||+++.+
T Consensus 317 Vf~ISA~tgeG 327 (500)
T PRK12296 317 VFEVSAASREG 327 (500)
T ss_pred EEEEECCCCCC
Confidence 99999998866
No 59
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.98 E-value=3e-09 Score=100.05 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=84.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChh-hhhHHHHHHHHHHH-hhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPY-EKNLDFWRQLWRVI-ERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e~~rql~~vi-e~sD 173 (595)
+.|-.+|+.|||++.+.|...+-. ....+.+..+.+.||||+...+. +++ .+..+....+ ..+|
T Consensus 3 i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~-~~~~~~~~~~~~~~d 81 (168)
T cd01897 3 LVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERN-TIEMQAITALAHLRA 81 (168)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCc-hHHHHHHHHHHhccC
Confidence 445678999999999999875432 11234456788999999854332 222 1122222222 3479
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++..+.......++..+ ..+.|+|+|+||+|+.+........++....+.+++.+||+++.+
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCC
Confidence 99999999887553222222333322 236899999999999876544332233333356788999999876
No 60
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.97 E-value=1.8e-09 Score=99.53 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=91.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-+-..|+.|||++.+.+...+-. ....|.+..+.++||||+.........+.++..+..+.++|+
T Consensus 4 i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADL 83 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCE
Confidence 345568899999999998865421 234466778899999998765433334446677788899999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|+.++....+..+... ..++|+++|+||+|+.+.... .....+.+++.+||.++.+
T Consensus 84 ~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 84 VLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCC
Confidence 999999998876555443332 347899999999999876543 2223356889999987755
No 61
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.97 E-value=1.6e-09 Score=102.68 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=86.6
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARN 183 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~ 183 (595)
.+.+-.+||.||||++|.|.+.... ....|... .++||||..... .++.+.+...+..+|++|+|+|+.+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~v~~~~~--~~iDtpG~~~~~----~~~~~~~~~~~~~ad~il~v~d~~~ 76 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVEFNDK--GDIDTPGEYFSH----PRWYHALITTLQDVDMLIYVHGAND 76 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccCccceEEEECCC--CcccCCccccCC----HHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 3567789999999999998875421 12233332 268999964322 2345566667899999999999998
Q ss_pred CCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC--eEEEEecccCCC
Q psy9995 184 PLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV--AVAFFSATNIYD 244 (595)
Q Consensus 184 Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi--~vi~~SA~~~~~ 244 (595)
+..+....+.. +..++|+++|+||+|+... ....+.+++.+.+. +++++||+++.+
T Consensus 77 ~~s~~~~~~~~----~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 77 PESRLPAGLLD----IGVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred cccccCHHHHh----ccCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 86654433322 2346789999999998543 23344555555554 899999999876
No 62
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.96 E-value=1.3e-09 Score=100.02 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=84.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH----hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE----FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNP 184 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~----f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~P 184 (595)
+.|-.+|+.|||++++.+.+.+... ..+|.. .++||+|... ...+.++.+...+..+|++|+|+|+.++
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~~~~~~t~~~~~~~---~~iDt~G~~~----~~~~~~~~~~~~~~~ad~vilv~d~~~~ 75 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEILYKKTQAVEYND---GAIDTPGEYV----ENRRLYSALIVTAADADVIALVQSATDP 75 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCccccccceeEEEcC---eeecCchhhh----hhHHHHHHHHHHhhcCCEEEEEecCCCC
Confidence 4567899999999999998765431 123333 6789999631 1223455555678999999999999999
Q ss_pred CCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH-HHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 185 LLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ-RCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 185 l~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
.++....+...+ .+|.|+|+||+||.+... .+...++++..+. +++.+||+++.+
T Consensus 76 ~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 76 ESRFPPGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred CcCCChhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 887654433322 359999999999975321 1222333444455 688899998876
No 63
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.96 E-value=4.3e-09 Score=103.63 Aligned_cols=100 Identities=12% Similarity=0.107 Sum_probs=72.5
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCC
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKAD 213 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~D 213 (595)
.+|.+..+.|+||||.. .+...+...+..+|++++|+|+..+.......+..++.. .++| +|+|+||+|
T Consensus 60 ~~~~~~~i~~iDtPG~~--------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D 129 (195)
T cd01884 60 YETANRHYAHVDCPGHA--------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKAD 129 (195)
T ss_pred ecCCCeEEEEEECcCHH--------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCC
Confidence 45778889999999964 467788889999999999999987765444445555552 3565 678999999
Q ss_pred CCCHHHHHH-----HHHHHhhCC-----CeEEEEecccCCC
Q psy9995 214 LLTRKQRCY-----WTKYFNSVN-----VAVAFFSATNIYD 244 (595)
Q Consensus 214 Ll~~~~~~~-----w~~~~~~~g-----i~vi~~SA~~~~~ 244 (595)
++..+.+.. ..+++...| ++++++||.++.+
T Consensus 130 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 130 MVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALE 170 (195)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccC
Confidence 975443322 333444433 5799999999876
No 64
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.96 E-value=3.4e-09 Score=112.51 Aligned_cols=138 Identities=20% Similarity=0.192 Sum_probs=92.8
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC-eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR-ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg-~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-..+-|-.+||+||||+++.|....-. ....+.+ ..+.|.||||++....+ ...+-.+.++.+++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~-~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE-GAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc-cccHHHHHHHHHHh
Confidence 355677899999999999999875311 1123334 67889999998753321 12234556677899
Q ss_pred cCeEEEEEeCCCCCCCC-chHHHHHHHHh---C---CCCcEEEEEeCCCCCCHHHHHHHHHHHhh-CCCeEEEEecccCC
Q psy9995 172 SDVIVQIVDARNPLLFR-CEDLERYVKEV---S---PHKRNMILLNKADLLTRKQRCYWTKYFNS-VNVAVAFFSATNIY 243 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~-~~~Le~~lk~v---~---~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-~gi~vi~~SA~~~~ 243 (595)
+|++|+|+|+.++-... -..+..+..++ . .++|.|||+||+|+.+......+.+++.+ .+.+++++||+++.
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence 99999999998652111 11222222221 1 36899999999999887666666666543 36789999998876
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 316 G 316 (329)
T TIGR02729 316 G 316 (329)
T ss_pred C
Confidence 5
No 65
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.95 E-value=1.5e-09 Score=102.39 Aligned_cols=132 Identities=20% Similarity=0.127 Sum_probs=88.0
Q ss_pred CCCCCCCcCCCHHHHHHHHH----------H---Hhhhhc-CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 112 PRRPKWDKNTTAEQLQAMER----------D---EFLQWR-RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 112 prRPnw~kst~~n~L~~~Er----------~---~f~~wr-g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
-.+|+.||||+.+.|...+- . ....|. +..+.++||||+.... .....++++.+..+..+|+|++
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGA-SEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhh-hcCCCccHHHHHHHhccCEEEE
Confidence 36899999999999987642 1 224466 7888999999975321 1222335566777889999999
Q ss_pred EEeCCCCCC----CCchHHHHHHHHh---C--------CCCcEEEEEeCCCCCCHHHHHHHH--HHHhhCCCeEEEEecc
Q psy9995 178 IVDARNPLL----FRCEDLERYVKEV---S--------PHKRNMILLNKADLLTRKQRCYWT--KYFNSVNVAVAFFSAT 240 (595)
Q Consensus 178 VvDAR~Pl~----~~~~~Le~~lk~v---~--------~~K~~ILVlNK~DLl~~~~~~~w~--~~~~~~gi~vi~~SA~ 240 (595)
|+|+.++.. .....+..+..++ . .++|+++|+||+|+.+......|. ......+..++.+||+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK 160 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence 999988741 1111111111111 1 368999999999998877666652 2222335678999998
Q ss_pred cCCC
Q psy9995 241 NIYD 244 (595)
Q Consensus 241 ~~~~ 244 (595)
++.+
T Consensus 161 ~~~g 164 (176)
T cd01881 161 TEEG 164 (176)
T ss_pred hhcC
Confidence 8866
No 66
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.94 E-value=5e-09 Score=97.83 Aligned_cols=134 Identities=21% Similarity=0.243 Sum_probs=92.5
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh-hhhHH--HHHHHHHHHhh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY-EKNLD--FWRQLWRVIER 171 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e--~~rql~~vie~ 171 (595)
+-+-..|+.||||+.++|.+.... .+..+.+..+.++||+|+..... ....+ .+.+....+..
T Consensus 5 i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ 84 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIER 84 (174)
T ss_pred EEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhh
Confidence 445678899999999999775421 23456677788999999754311 11111 11234456789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--HHHHHHHHHHhhC-----CCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR--KQRCYWTKYFNSV-----NVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~--~~~~~w~~~~~~~-----gi~vi~~SA~~~~~ 244 (595)
+|++++|+|+.+|.+.....+..++. ..++|+++|+||+|+.+. .....+.+.+... +.+++++||+.+.+
T Consensus 85 ~d~vi~v~d~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (174)
T cd01895 85 ADVVLLVIDATEGITEQDLRIAGLIL--EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQG 162 (174)
T ss_pred cCeEEEEEeCCCCcchhHHHHHHHHH--hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCC
Confidence 99999999999998766555555544 346899999999999876 4555555555432 35788999998766
No 67
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.93 E-value=2.4e-09 Score=111.07 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=102.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh-c
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER-S 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~-s 172 (595)
.-+-|-.-||+||||+...|....=+ ...+.+...++++||||+.+.|++..+++-+|.--++.. .
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~ 248 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLA 248 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhc
Confidence 34557789999999999999977544 455677778999999999999998777888998888885 7
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhC--CCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCe-EEEEecccC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVS--PHKRNMILLNKADLLTRKQRCYWTKYFNSVNVA-VAFFSATNI 242 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~--~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~-vi~~SA~~~ 242 (595)
++|++++|++.--.+.-++-.+++.++. -.+|+++|+||+|+...+..+....++...|.. .+.+++..+
T Consensus 249 ~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (346)
T COG1084 249 GVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKG 321 (346)
T ss_pred CeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeeh
Confidence 9999999998655554444444444442 237899999999999888887777776655543 455555443
No 68
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.93 E-value=4.2e-09 Score=114.15 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=88.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC-eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR-ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg-~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+.|-.+||+||||++|.|....-. ....+.. ..+.|+||||++....+ ...+..++.+.++++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~-~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE-GAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc-hhhHHHHHHHHHHhC
Confidence 35788899999999999999864211 1233433 45889999999764322 112344556689999
Q ss_pred CeEEEEEeCCCCCC-CCchHHHHHHHHhC------CCCcEEEEEeCCCCCCHHHHHHHHHHHhh-CC--CeEEEEecccC
Q psy9995 173 DVIVQIVDARNPLL-FRCEDLERYVKEVS------PHKRNMILLNKADLLTRKQRCYWTKYFNS-VN--VAVAFFSATNI 242 (595)
Q Consensus 173 DvVl~VvDAR~Pl~-~~~~~Le~~lk~v~------~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-~g--i~vi~~SA~~~ 242 (595)
|+||+|+|+...-. .....+..++.++. ..+|.|||+||+|+.+..........+.+ .+ ..++++||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 99999999872100 01122222222221 35899999999999876555444443332 23 36899999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 319 ~G 320 (390)
T PRK12298 319 LG 320 (390)
T ss_pred cC
Confidence 66
No 69
>PRK11058 GTPase HflX; Provisional
Probab=98.92 E-value=6.9e-09 Score=113.74 Aligned_cols=134 Identities=12% Similarity=0.152 Sum_probs=89.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC-eeeEEEeCCCcccC-hhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR-ELNLLQEEDGLVIT-PYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg-~~~~L~DT~Gi~~t-~~ern~e~~rql~~vie~ 171 (595)
..+.|-..||+||||++|.|.+.+.. ..+.|.+ ..+.|+||+|++.. +... .+.++.....+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~l-ve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDL-VAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHH-HHHHHHHHHHhhc
Confidence 45788899999999999999986542 1233444 37889999998432 2222 1224445667889
Q ss_pred cCeEEEEEeCCCCCCCCch-HHHHHHHHhC-CCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCe-EEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCE-DLERYVKEVS-PHKRNMILLNKADLLTRKQRCYWTKYFNSVNVA-VAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~-~Le~~lk~v~-~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~-vi~~SA~~~~~ 244 (595)
+|++|+|+|+.+|.++... .+..++..+. .++|+|+|+||+|+.+..... .... ..+.+ ++++||+++.|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~-~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRD-EENKPIRVWLSAQTGAG 349 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHH-hcCCCceEEEeCCCCCC
Confidence 9999999999998754332 1234455442 368999999999997542211 1111 23444 47899998876
No 70
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.91 E-value=2.5e-09 Score=117.69 Aligned_cols=130 Identities=19% Similarity=0.173 Sum_probs=93.6
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
....+.|-..||+||||++|.|.+.+++ ....|.+..+.++||||+...........++.....++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 3446778899999999999999987653 23567788899999999876544333344566677889
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEeccc
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATN 241 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~ 241 (595)
.+|++|+|+|+.++.+.... +...+. ..++|+|+|+||+|+... ....+ ....+.+++.+||++
T Consensus 282 ~aD~il~V~D~s~~~s~~~~-~l~~~~--~~~~piIlV~NK~Dl~~~-~~~~~---~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 282 QADLVIYVLDASQPLTKDDF-LIIDLN--KSKKPFILVLNKIDLKIN-SLEFF---VSSKVLNSSNLSAKQ 345 (442)
T ss_pred hCCEEEEEEECCCCCChhHH-HHHHHh--hCCCCEEEEEECccCCCc-chhhh---hhhcCCceEEEEEec
Confidence 99999999999988764332 222222 247899999999999754 22222 223356788899986
No 71
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.90 E-value=1.7e-08 Score=98.14 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=84.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHH-----------HHH---------Hhhhhc--------------CeeeEEEeCCCcccCh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAM-----------ERD---------EFLQWR--------------RELNLLQEEDGLVITP 154 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~-----------Er~---------~f~~wr--------------g~~~~L~DT~Gi~~t~ 154 (595)
+.|-.+++.|||++.+.|... |++ ....|. +..+.++||||..
T Consensus 3 i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--- 79 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA--- 79 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH---
Confidence 345568899999999998762 111 123343 6678899999962
Q ss_pred hhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHh--
Q psy9995 155 YEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFN-- 228 (595)
Q Consensus 155 ~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~-- 228 (595)
.+++..+..+..+|++++|+|++........+...+.. ..++|+++|+||+|+..... ...+.+.+.
T Consensus 80 -----~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~--~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 80 -----SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE--ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred -----HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH--HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 46788888888999999999998765433222222222 23679999999999986433 233333221
Q ss_pred -----hCCCeEEEEecccCCC
Q psy9995 229 -----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 229 -----~~gi~vi~~SA~~~~~ 244 (595)
..+++++++||+++.+
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~g 173 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGG 173 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCC
Confidence 1356899999998876
No 72
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.90 E-value=6.7e-09 Score=102.85 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=84.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------------------------------------------HhhhhcCeeeEE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------------------------------------------EFLQWRRELNLL 144 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------------------------------------------~f~~wrg~~~~L 144 (595)
+.|-.+|+.||||+.+.|+...+. ...+|.+..+.|
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~l 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEE
Confidence 456678999999999998754321 233578889999
Q ss_pred EeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--HH---
Q psy9995 145 QEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR--KQ--- 219 (595)
Q Consensus 145 ~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~--~~--- 219 (595)
+||||.. ++...+...+..+|++|+|+|+..+.......+..++... ..+++|+|+||+|+... ..
T Consensus 82 iDTpG~~--------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 82 ADTPGHE--------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EECCcHH--------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhcccCCHHHHHH
Confidence 9999952 2344455678899999999999987654333333444322 22456779999999742 21
Q ss_pred -HHHHHHHHhhCC---CeEEEEecccCCCC
Q psy9995 220 -RCYWTKYFNSVN---VAVAFFSATNIYDD 245 (595)
Q Consensus 220 -~~~w~~~~~~~g---i~vi~~SA~~~~~~ 245 (595)
.....+.+...+ .+++++||+++.+.
T Consensus 153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni 182 (208)
T cd04166 153 IVADYLAFAAKLGIEDITFIPISALDGDNV 182 (208)
T ss_pred HHHHHHHHHHHcCCCCceEEEEeCCCCCCC
Confidence 122223333444 35899999998774
No 73
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.90 E-value=5.4e-09 Score=114.22 Aligned_cols=135 Identities=20% Similarity=0.202 Sum_probs=87.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH----Hh---------hhhc-CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD----EF---------LQWR-RELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~----~f---------~~wr-g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-..+.+-.+||+||||+++.|....-. .| ..+. +..+.|.|+||++.... ....+..+..+.+++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~-~~~gLg~~fLrhier 236 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS-EGVGLGHQFLRHIER 236 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc-ccchHHHHHHHHHhh
Confidence 346778899999999999999965411 12 2333 56788999999976322 222344556677899
Q ss_pred cCeEEEEEeCCCCCCCC-chHHHHHHHHh---C---CCCcEEEEEeCCCCCCHH-HHHHHHHHHhhCCCeEEEEecccCC
Q psy9995 172 SDVIVQIVDARNPLLFR-CEDLERYVKEV---S---PHKRNMILLNKADLLTRK-QRCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~-~~~Le~~lk~v---~---~~K~~ILVlNK~DLl~~~-~~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
+|++|+|+|+.++.... ..++..+..++ . .++|.|||+||+||.... ....+.+. .+.+++++||+++.
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~---l~~~i~~iSA~tge 313 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEK---LGPKVFPISALTGQ 313 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHH---hCCcEEEEeCCCCC
Confidence 99999999996432111 11222222222 1 368999999999984332 22333333 34678999999876
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 314 G 314 (424)
T PRK12297 314 G 314 (424)
T ss_pred C
Confidence 6
No 74
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.88 E-value=1.9e-09 Score=111.02 Aligned_cols=57 Identities=26% Similarity=0.433 Sum_probs=48.3
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEc--CCceEEEeCCCCccC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFV--DDELLLCDCPGLVMP 380 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~--~~~~~liDtPGl~~p 380 (595)
+|++||.||||||||+|+|++.+...||+.|++|++.. .+.. +..++++||||+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 58999999999999999999998888999999999853 3332 346899999999755
No 75
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.88 E-value=6.7e-09 Score=120.88 Aligned_cols=136 Identities=19% Similarity=0.242 Sum_probs=95.7
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhh-hHHHHHH--HHHHH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEK-NLDFWRQ--LWRVI 169 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~er-n~e~~rq--l~~vi 169 (595)
..+.|-.+||.||||+.|.|.+.++. ....|.+..+.|+||+|+....... ..+.... ...++
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i 530 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAI 530 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHh
Confidence 46778899999999999999988763 2245778888999999986432111 1222222 24568
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhh----C-CCeEEEEecccCCC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNS----V-NVAVAFFSATNIYD 244 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~----~-gi~vi~~SA~~~~~ 244 (595)
+.+|++|+|+|+.++.+..+..+...+. ..++|+|||+||+||.+......+.+.+.. . ..+++++||+++.+
T Consensus 531 ~~advvilViDat~~~s~~~~~i~~~~~--~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~g 608 (712)
T PRK09518 531 ERSELALFLFDASQPISEQDLKVMSMAV--DAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWH 608 (712)
T ss_pred hcCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCC
Confidence 8999999999999887765544444443 357999999999999876543333332221 1 34678999999876
No 76
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.88 E-value=1.7e-09 Score=105.96 Aligned_cols=59 Identities=29% Similarity=0.309 Sum_probs=48.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecC-CCCCceeeEEEE---cCCceEEEeCCCCccCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSA-TPGKTKHFQTLF---VDDELLLCDCPGLVMPS 381 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~-tPG~TKh~Qti~---~~~~~~liDtPGl~~p~ 381 (595)
++|++||.||||||||+|+|+|.+.+.++. .+|+|++.|... -+..+.++||||+..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 479999999999999999999988665554 679999987653 35679999999998654
No 77
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.87 E-value=5.1e-09 Score=97.05 Aligned_cols=127 Identities=19% Similarity=0.109 Sum_probs=85.0
Q ss_pred CCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 113 RRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 113 rRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
.+++.|||++.+.+.+..-. ...+|.+..+.++||||+.. ........+++..... +.+|++|+|
T Consensus 3 G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi~v 81 (158)
T cd01879 3 GNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIVNV 81 (158)
T ss_pred CCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEEEE
Confidence 57899999999999875311 23467777889999999754 2222233444443333 689999999
Q ss_pred EeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHH-hhCCCeEEEEecccCCC
Q psy9995 179 VDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYF-NSVNVAVAFFSATNIYD 244 (595)
Q Consensus 179 vDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~-~~~gi~vi~~SA~~~~~ 244 (595)
+|+..+.. ...+...+. ..++|+|+|+||+|+.+......+...+ ...+.+++.+||.++.+
T Consensus 82 ~d~~~~~~--~~~~~~~~~--~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 144 (158)
T cd01879 82 VDATNLER--NLYLTLQLL--ELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEG 144 (158)
T ss_pred eeCCcchh--HHHHHHHHH--HcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCC
Confidence 99987532 222322333 3578999999999997654333333333 23467899999998876
No 78
>KOG1191|consensus
Probab=98.86 E-value=1.7e-09 Score=116.99 Aligned_cols=58 Identities=38% Similarity=0.496 Sum_probs=51.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CCceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DDELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~~~~liDtPGl~~ 379 (595)
.+.|+|+|.||||||||+|+|.+...+.||+.||+||+.-.. .+ +..+.|+||.|+..
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 489999999999999999999999999999999999996432 23 56799999999997
No 79
>COG2262 HflX GTPases [General function prediction only]
Probab=98.86 E-value=7.7e-09 Score=110.28 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=92.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----Hh---------hhh-cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----EF---------LQW-RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----~f---------~~w-rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.+-.=.|.||||++|.|...... -| +.| .|..+.|.||-|++......-.+-.+....-+..+|
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aD 273 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEAD 273 (411)
T ss_pred eEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCC
Confidence 3445566899999999999966543 12 123 367889999999988655444555666667778899
Q ss_pred eEEEEEeCCCCCCCC-chHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFR-CEDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~-~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|||+++|.... -....+.+.++ ...+|+|+|+||+|+++........... ....+++||+++.|
T Consensus 274 lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~---~~~~v~iSA~~~~g 343 (411)
T COG2262 274 LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG---SPNPVFISAKTGEG 343 (411)
T ss_pred EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc---CCCeEEEEeccCcC
Confidence 999999999994321 12233445555 2458999999999998776522222211 12589999999877
No 80
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.85 E-value=1.5e-08 Score=96.54 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=86.1
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHHH-----------------------------hhhhcCeeeEEEeCCCcccChhhhhHH
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERDE-----------------------------FLQWRRELNLLQEEDGLVITPYEKNLD 160 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~~-----------------------------f~~wrg~~~~L~DT~Gi~~t~~ern~e 160 (595)
.|=..|+.||||+.|.|.+.+... ...|.+..+.|+||||.. .
T Consensus 3 ~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~--------~ 74 (189)
T cd00881 3 GIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE--------D 74 (189)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH--------H
Confidence 345678999999999997664321 234556778899999963 2
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH----HHHHHHhh-------
Q psy9995 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC----YWTKYFNS------- 229 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~----~w~~~~~~------- 229 (595)
+.......+..+|.+++|+|+..+.......+..++. ..++|+++|+||+|+..+.... ...+.+..
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAR--EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHH--HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 2334445678999999999999887654444444554 3578999999999998743322 22233322
Q ss_pred -------CCCeEEEEecccCCC
Q psy9995 230 -------VNVAVAFFSATNIYD 244 (595)
Q Consensus 230 -------~gi~vi~~SA~~~~~ 244 (595)
...+++++||+.+.+
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~g 174 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIG 174 (189)
T ss_pred hhhcccCCcceEEEEecccCcC
Confidence 246788999998876
No 81
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.82 E-value=1.6e-08 Score=94.54 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=95.2
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH----HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCC
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD----EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLL 186 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~----~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~ 186 (595)
+-.+.-.||+|+.+.|.+.+.. ..+++.+ .++|||| .|-.|..+++.|.-....||+|++|.||..|..
T Consensus 6 liG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~---~~IDTPG----EyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~ 78 (143)
T PF10662_consen 6 LIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYD---NTIDTPG----EYIENPRFYHALIVTAQDADVVLLLQDATEPRS 78 (143)
T ss_pred EECCCCCCHHHHHHHHcCCCCCcCccceeEecc---cEEECCh----hheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc
Confidence 4467778999999999987743 3344443 3589998 455566778888888999999999999999998
Q ss_pred CCchHHHHHHHHhCCCCcEEEEEeCCCCC-CHHHHHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 187 FRCEDLERYVKEVSPHKRNMILLNKADLL-TRKQRCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 187 ~~~~~Le~~lk~v~~~K~~ILVlNK~DLl-~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
..++.+.... ++|+|=|+||+|+. +..+.+.-.++++..|. +++.+|+.++.|
T Consensus 79 ~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eG 133 (143)
T PF10662_consen 79 VFPPGFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEG 133 (143)
T ss_pred cCCchhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcC
Confidence 8888877654 58999999999998 45566655667777787 567799988876
No 82
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.81 E-value=5.8e-09 Score=100.36 Aligned_cols=61 Identities=43% Similarity=0.523 Sum_probs=52.8
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
....+|+++|.+|||||||+|+|++.. ...++.+||+|.+.+.+..+..+.++||||+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 77 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA 77 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence 345789999999999999999999875 5678999999999887777778999999997644
No 83
>KOG1423|consensus
Probab=98.80 E-value=4.4e-09 Score=107.95 Aligned_cols=61 Identities=31% Similarity=0.508 Sum_probs=53.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p~ 381 (595)
..+.|+++|.||||||||+|.+.|.+.+.||+.+.+|+|--+-.+ +-.++++||||++-++
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 358999999999999999999999999999999999999665333 3478999999999665
No 84
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.79 E-value=4.6e-09 Score=113.86 Aligned_cols=57 Identities=37% Similarity=0.520 Sum_probs=48.3
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC--CceEEEeCCCCccCC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD--DELLLCDCPGLVMPS 381 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~--~~~~liDtPGl~~p~ 381 (595)
.|+|||+||||||||||+|++.+ +.|++.|++|++... +..+ ..++++||||+..+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 69999999999999999999866 699999999999665 3333 359999999998654
No 85
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.79 E-value=2.1e-08 Score=96.45 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=91.3
Q ss_pred hcCCcccCCCCCCCCcCCCHHHHHHHH-HH------------HhhhhcCeeeEEEeCCCcccChhh-hhHHHHHH-HHHH
Q psy9995 104 EKRELLKIPRRPKWDKNTTAEQLQAME-RD------------EFLQWRRELNLLQEEDGLVITPYE-KNLDFWRQ-LWRV 168 (595)
Q Consensus 104 ~~~~~l~iprRPnw~kst~~n~L~~~E-r~------------~f~~wrg~~~~L~DT~Gi~~t~~e-rn~e~~rq-l~~v 168 (595)
.....+-|-..|+.||||+.|.|.+.+ .. .+..+. ..+.++||||+...... ...+-|.. +...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 455677888999999999999998764 11 011122 24789999997543211 11111222 2222
Q ss_pred H---hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHhhCC--CeEEEEec
Q psy9995 169 I---ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFNSVN--VAVAFFSA 239 (595)
Q Consensus 169 i---e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~~~g--i~vi~~SA 239 (595)
+ ..+|.+++|+|++.+++.....+..++. ..++|+++|+||+|+.+... ...+.+.+...+ .+++++||
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~--~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa 172 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDLEMLEWLR--ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSS 172 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHHHHHHHHH--HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEEC
Confidence 2 3568999999999887766655555555 34789999999999987543 344555665544 37899999
Q ss_pred ccCCC
Q psy9995 240 TNIYD 244 (595)
Q Consensus 240 ~~~~~ 244 (595)
+++.|
T Consensus 173 ~~g~g 177 (179)
T TIGR03598 173 LKKTG 177 (179)
T ss_pred CCCCC
Confidence 99876
No 86
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.78 E-value=1e-08 Score=104.76 Aligned_cols=61 Identities=33% Similarity=0.398 Sum_probs=52.5
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMP 380 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p 380 (595)
...++|+++|.+|||||||+|+|++...+.+++.++.|+..+.+.. +..+.++||||+...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 4568999999999999999999999998889999888988776543 457899999998754
No 87
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.78 E-value=8.1e-09 Score=99.90 Aligned_cols=60 Identities=45% Similarity=0.558 Sum_probs=53.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
..++|++||.+|||||||||+|++.. ...++.+||+|++.+.+.++..+.|+||||+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence 45789999999999999999999875 6788999999999988777788999999997643
No 88
>KOG0057|consensus
Probab=98.78 E-value=1.3e-09 Score=119.24 Aligned_cols=129 Identities=22% Similarity=0.269 Sum_probs=96.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhh
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMR 401 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lr 401 (595)
.-+|||||.+|+||||+||+|++.. . .++-++|| |+.... +..+.+|
T Consensus 378 GekVaIvG~nGsGKSTilr~LlrF~-----------------d-~sG~I~Id--G~dik~-------------~~~~SlR 424 (591)
T KOG0057|consen 378 GEKVAIVGSNGSGKSTILRLLLRFF-----------------D-YSGSILID--GQDIKE-------------VSLESLR 424 (591)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----------------c-cCCcEEEC--CeeHhh-------------hChHHhh
Confidence 3589999999999999999999854 3 56778999 887665 4567888
Q ss_pred hhhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 402 DHVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 402 d~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
..++.|.+-..+++.+++.| .||.+-..+.+..+.-+....+|.+..+..+ ||.+.+||+.|....||.|||
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 88888888888899999998 7998654332221112233455666666443 999999999999999999999
Q ss_pred HHHhCCceeecCC
Q psy9995 474 DFVNGHLLYCQAP 486 (595)
Q Consensus 474 D~~~GKL~~~~~P 486 (595)
|- -++.|-.|
T Consensus 505 da---~Il~~DEa 514 (591)
T KOG0057|consen 505 DA---PILLLDEA 514 (591)
T ss_pred CC---CeEEecCc
Confidence 73 45555433
No 89
>PTZ00258 GTP-binding protein; Provisional
Probab=98.77 E-value=7.2e-09 Score=111.85 Aligned_cols=60 Identities=38% Similarity=0.500 Sum_probs=49.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc------------------CCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV------------------DDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~------------------~~~~~liDtPGl~~p 380 (595)
..++|||||+||||||||+|+|++.. +.+++.||+|++... +.+ +..+.++||||++..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35789999999999999999998766 799999999988654 222 235899999999955
Q ss_pred C
Q psy9995 381 S 381 (595)
Q Consensus 381 ~ 381 (595)
.
T Consensus 99 a 99 (390)
T PTZ00258 99 A 99 (390)
T ss_pred C
Confidence 3
No 90
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.77 E-value=1e-08 Score=107.16 Aligned_cols=76 Identities=26% Similarity=0.371 Sum_probs=59.2
Q ss_pred HHHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEE---cCCceEEEeCCC
Q psy9995 300 REELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLF---VDDELLLCDCPG 376 (595)
Q Consensus 300 ~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~---~~~~~~liDtPG 376 (595)
.++|.+++..+... ....++|+++|.+||||||++|+|++...+.+|+.++.|.+.+... -+..+.+|||||
T Consensus 21 q~~l~~~l~~l~~~-----~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPG 95 (313)
T TIGR00991 21 QTKLLELLGKLKEE-----DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPG 95 (313)
T ss_pred HHHHHHHHHhcccc-----cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCC
Confidence 46777877655332 2456899999999999999999999999888888888776654422 356899999999
Q ss_pred CccC
Q psy9995 377 LVMP 380 (595)
Q Consensus 377 l~~p 380 (595)
+...
T Consensus 96 L~d~ 99 (313)
T TIGR00991 96 LIEG 99 (313)
T ss_pred CCch
Confidence 9754
No 91
>KOG0058|consensus
Probab=98.76 E-value=1.6e-09 Score=122.01 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=99.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.|++||.+|.||||++|.|.+.+ ....+-+++| |..... +....+|.
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY-----------------~PtsG~IllD--G~~i~~-------------~~~~~lr~ 542 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFY-----------------DPTSGRILLD--GVPISD-------------INHKYLRR 542 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc-----------------CCCCCeEEEC--Ceehhh-------------cCHHHHHH
Confidence 368999999999999999999866 5567889999 887666 45667888
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
+++.|.+-.-++..++.|| .||......++...+.+.++++||+..+..+ +|...+|||.++.++||++|++
T Consensus 543 ~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~ 622 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRN 622 (716)
T ss_pred HeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcC
Confidence 9999999888999999999 7999744333333344566889999998876 8889999999999999999975
No 92
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.76 E-value=8.1e-08 Score=93.62 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=83.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHH--------------------HH---------HhhhhcCeeeEEEeCCCcccChhhhhH
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAME--------------------RD---------EFLQWRRELNLLQEEDGLVITPYEKNL 159 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~E--------------------r~---------~f~~wrg~~~~L~DT~Gi~~t~~ern~ 159 (595)
+.|-..++.|||++.+.|.... +. ....|.+..+.++||||...
T Consensus 5 i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~------- 77 (194)
T cd01891 5 IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD------- 77 (194)
T ss_pred EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH-------
Confidence 3455678888888888887521 11 12456778889999999632
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH---HHHHHHHHHHhh-------
Q psy9995 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR---KQRCYWTKYFNS------- 229 (595)
Q Consensus 160 e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~---~~~~~w~~~~~~------- 229 (595)
+.......+..+|++++|+|+.+........+...+. ..+.|+++|+||+|+... .....+.+++..
T Consensus 78 -~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (194)
T cd01891 78 -FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKAL--ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ 154 (194)
T ss_pred -HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHH--HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc
Confidence 2334455788999999999998754322222222222 346899999999999643 223455555522
Q ss_pred CCCeEEEEecccCCC
Q psy9995 230 VNVAVAFFSATNIYD 244 (595)
Q Consensus 230 ~gi~vi~~SA~~~~~ 244 (595)
.+++++++||+++.+
T Consensus 155 ~~~~iv~~Sa~~g~~ 169 (194)
T cd01891 155 LDFPVLYASAKNGWA 169 (194)
T ss_pred CccCEEEeehhcccc
Confidence 256889999999876
No 93
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.76 E-value=7.3e-09 Score=110.70 Aligned_cols=57 Identities=35% Similarity=0.434 Sum_probs=48.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC------------------CceEEEeCCCCccC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD------------------DELLLCDCPGLVMP 380 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~------------------~~~~liDtPGl~~p 380 (595)
++||+||+||||||||+|+|++.. +.+++.||+|++... +.++ ..+.++|+||++..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 689999999999999999999988 899999999988652 3332 24899999999854
No 94
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.75 E-value=7.2e-08 Score=91.74 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=78.1
Q ss_pred cCCCCCCCCcCCCHHHHHHHHH-------------------H---------Hhhhh-----cCeeeEEEeCCCcccChhh
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMER-------------------D---------EFLQW-----RRELNLLQEEDGLVITPYE 156 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er-------------------~---------~f~~w-----rg~~~~L~DT~Gi~~t~~e 156 (595)
.+-..++.|||++.+.|..... . ....| .+..+.|.||||...
T Consensus 4 ~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---- 79 (179)
T cd01890 4 SIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD---- 79 (179)
T ss_pred EEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh----
Confidence 4456788999999999887431 1 01223 244567899999743
Q ss_pred hhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH---HHHHHHHHHhhCCCe
Q psy9995 157 KNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK---QRCYWTKYFNSVNVA 233 (595)
Q Consensus 157 rn~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~---~~~~w~~~~~~~gi~ 233 (595)
+.......+..+|++|+|+|+.++..+........+ ...++|+|+|+||+|+.... ....+.+.+.-....
T Consensus 80 ----~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~--~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 80 ----FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLA--LENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSE 153 (179)
T ss_pred ----hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH--HHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCccc
Confidence 223344567889999999999987654332222222 23568999999999986422 123333333111124
Q ss_pred EEEEecccCCC
Q psy9995 234 VAFFSATNIYD 244 (595)
Q Consensus 234 vi~~SA~~~~~ 244 (595)
++.+||+++.+
T Consensus 154 ~~~~Sa~~g~g 164 (179)
T cd01890 154 AILVSAKTGLG 164 (179)
T ss_pred EEEeeccCCCC
Confidence 78899988766
No 95
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.73 E-value=6.3e-08 Score=106.20 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=68.4
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCC--CCCCCchHHHHHHHHhCCCCcEEEEEeC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARN--PLLFRCEDLERYVKEVSPHKRNMILLNK 211 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~--Pl~~~~~~Le~~lk~v~~~K~~ILVlNK 211 (595)
..+|.+..+.|+||||.. .+++.+...+..+|++|+|+|+.+ +..........++... ..+++|+|+||
T Consensus 78 ~~~~~~~~i~liDtpG~~--------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK 148 (425)
T PRK12317 78 KFETDKYYFTIVDCPGHR--------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINK 148 (425)
T ss_pred EEecCCeEEEEEECCCcc--------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEc
Confidence 456788899999999952 345666667789999999999998 4333333333344322 22468999999
Q ss_pred CCCCCH--HH----HHHHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 212 ADLLTR--KQ----RCYWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 212 ~DLl~~--~~----~~~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
+|+... +. .....+++...+ .+++++||+++.+.
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi 193 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNV 193 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCc
Confidence 999752 11 122333444444 46889999998773
No 96
>CHL00071 tufA elongation factor Tu
Probab=98.73 E-value=5.1e-08 Score=106.49 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=87.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHH--------------------HHH---------HhhhhcCeeeEEEeCCCcccChhhhhH
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAM--------------------ERD---------EFLQWRRELNLLQEEDGLVITPYEKNL 159 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~--------------------Er~---------~f~~wrg~~~~L~DT~Gi~~t~~ern~ 159 (595)
+.|-.+|+.||||+.+.|+.. ||+ .+.+|.+..+.|+||||..
T Consensus 15 i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~-------- 86 (409)
T CHL00071 15 IGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------- 86 (409)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH--------
Confidence 455567777777777777753 222 2335667788899999943
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCCCHHHHH-----HHHHHHhhCC--
Q psy9995 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLLTRKQRC-----YWTKYFNSVN-- 231 (595)
Q Consensus 160 e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl~~~~~~-----~w~~~~~~~g-- 231 (595)
.+++.+++.+..+|++++|+|+..+.......+..++. ..+.| +|+++||+|+++.+++. ....+|...+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~--~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAK--QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 56788888999999999999999876544444445554 24567 66889999998754432 3334454433
Q ss_pred ---CeEEEEecccCCC
Q psy9995 232 ---VAVAFFSATNIYD 244 (595)
Q Consensus 232 ---i~vi~~SA~~~~~ 244 (595)
++++++||.++.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 165 GDDIPIVSGSALLALE 180 (409)
T ss_pred CCcceEEEcchhhccc
Confidence 5789999988765
No 97
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.69 E-value=1.4e-07 Score=91.61 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
.|.+..+.|+||||. ..+...+.+.+..+|++|+|||+.++...........+. ..+.|.|+|+||+|++
T Consensus 66 ~~~~~~i~~iDtPG~--------~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~--~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 66 NENNRKITLIDTPGH--------EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILR--ELGIPIIVVLNKMDLI 135 (188)
T ss_dssp TESSEEEEEEEESSS--------HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHH--HTT-SEEEEEETCTSS
T ss_pred cccccceeecccccc--------cceeecccceecccccceeeeeccccccccccccccccc--ccccceEEeeeeccch
Confidence 478889999999994 245677788899999999999999887654444445554 3467899999999998
Q ss_pred CHH---HHHHHHHHH-hhC------CCeEEEEecccCCC
Q psy9995 216 TRK---QRCYWTKYF-NSV------NVAVAFFSATNIYD 244 (595)
Q Consensus 216 ~~~---~~~~w~~~~-~~~------gi~vi~~SA~~~~~ 244 (595)
..+ ..+++...| +.. .++++++||.++.+
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~g 174 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDG 174 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBT
T ss_pred hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCC
Confidence 432 223344233 222 24799999998866
No 98
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.69 E-value=1.1e-08 Score=105.90 Aligned_cols=55 Identities=40% Similarity=0.490 Sum_probs=45.6
Q ss_pred EEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcCC------------------ceEEEeCCCCccC
Q psy9995 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVDD------------------ELLLCDCPGLVMP 380 (595)
Q Consensus 325 i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~~------------------~~~liDtPGl~~p 380 (595)
||+||+||||||||+|+|++... .+++.||+|.+... +.+.. .+.++|+||++..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~ 75 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG 75 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence 58999999999999999999874 99999999988654 23222 4899999999854
No 99
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.69 E-value=2e-08 Score=110.97 Aligned_cols=59 Identities=32% Similarity=0.442 Sum_probs=50.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CCceEEEeCCCCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DDELLLCDCPGLVM 379 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~~~~liDtPGl~~ 379 (595)
..++|+++|+||||||||+|+|++.....|++.||+|+++... .+ +..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 3489999999999999999999998877899999999997653 33 45689999999864
No 100
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.68 E-value=4.2e-08 Score=96.04 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=92.2
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccCh---hhhhHHHHHHHHHHHh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITP---YEKNLDFWRQLWRVIE 170 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~---~ern~e~~rql~~vie 170 (595)
+.+-.+|+.|||++.|.|.+.+.. ....|.+..+.|+||||+..+. .....++.+.++....
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~ 82 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAP 82 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCC
Confidence 556789999999999999976542 2345788899999999998753 2334556666666677
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCC---CCcEEEEEeCCCCCCHHHHHHH--------HHHHhhCCCeEEEEec
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSP---HKRNMILLNKADLLTRKQRCYW--------TKYFNSVNVAVAFFSA 239 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~---~K~~ILVlNK~DLl~~~~~~~w--------~~~~~~~gi~vi~~SA 239 (595)
.+|+||+|+|++. ++..+..+.+.++++-+ .+++|+|+|++|.+.......| ...++..|..++.|+.
T Consensus 83 g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~ 161 (196)
T cd01852 83 GPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNN 161 (196)
T ss_pred CCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeC
Confidence 8999999999987 55445555556654322 2688999999998865433332 2223333667777776
Q ss_pred cc
Q psy9995 240 TN 241 (595)
Q Consensus 240 ~~ 241 (595)
..
T Consensus 162 ~~ 163 (196)
T cd01852 162 KA 163 (196)
T ss_pred CC
Confidence 54
No 101
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.67 E-value=1.4e-07 Score=91.18 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=89.5
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHH-HH------------HhhhhcCeeeEEEeCCCcccChhhh--h---HHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAME-RD------------EFLQWRRELNLLQEEDGLVITPYEK--N---LDFWRQLW 166 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~E-r~------------~f~~wrg~~~~L~DT~Gi~~t~~er--n---~e~~rql~ 166 (595)
+...+.|-..|+.|||++.+.|...+ .. .+..| +..+.|+||||+....... . ..+.....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence 44567788889999999999998743 11 11223 2457899999975432211 1 11222222
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHH----HHHHHhhCCCeEEEEecccC
Q psy9995 167 RVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY----WTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 167 ~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~----w~~~~~~~gi~vi~~SA~~~ 242 (595)
+..+.++++++|+|+..+.......+.+++.. .+.|+++|+||+|+++..+... +...+......++++||+.+
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~ 179 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKK 179 (196)
T ss_pred HhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCC
Confidence 33445689999999998876555455666652 4678999999999988654433 33444443568889999887
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 180 ~g 181 (196)
T PRK00454 180 QG 181 (196)
T ss_pred CC
Confidence 65
No 102
>PRK15494 era GTPase Era; Provisional
Probab=98.67 E-value=2.6e-08 Score=106.18 Aligned_cols=60 Identities=28% Similarity=0.563 Sum_probs=50.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~p 380 (595)
...+|++||.||||||||+|+|++.+...|++.|++|+++.. +.. +..+.++||||+..+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 347899999999999999999999887788999999998754 223 457899999999643
No 103
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.65 E-value=1.3e-07 Score=85.80 Aligned_cols=129 Identities=21% Similarity=0.121 Sum_probs=87.5
Q ss_pred CCCCCCcCCCHHHHHHHHHH--------------Hhhhhc-CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 113 RRPKWDKNTTAEQLQAMERD--------------EFLQWR-RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 113 rRPnw~kst~~n~L~~~Er~--------------~f~~wr-g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
..+..|||++.+.|.+.+.. ....+. ...+.++||+|+......... ........+..+|++++
T Consensus 3 G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-~~~~~~~~~~~~d~il~ 81 (163)
T cd00880 3 GRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-REELARRVLERADLILF 81 (163)
T ss_pred CCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-HHHHHHHHHHhCCEEEE
Confidence 45778899999988865432 111222 557789999998765443322 13455567889999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHH-----HHhhCCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTK-----YFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~-----~~~~~gi~vi~~SA~~~~~ 244 (595)
|+|+..+.......+..... ..+.|.++|+||+|+........|.. .....+.+++++||.++.+
T Consensus 82 v~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 82 VVDADLRADEEEEKLLELLR--ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEeCCCCCCHHHHHHHHHHH--hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 99999887654443222222 45789999999999998877666632 1122356788999988765
No 104
>PRK04213 GTP-binding protein; Provisional
Probab=98.65 E-value=2.7e-08 Score=97.12 Aligned_cols=56 Identities=34% Similarity=0.459 Sum_probs=48.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. +.++..||+|.+...+... .+.++||||+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFG 63 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCccc
Confidence 35789999999999999999999876 7788999999987776665 79999999973
No 105
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.65 E-value=2.7e-07 Score=91.08 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=63.8
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCC-CCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLL-FRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~-~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
..+.|+||||. ..+.+.....+..+|++++|+|+..|.. .........+.. ...+++|||+||+|+.+..
T Consensus 83 ~~i~~iDtPG~--------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 83 RHVSFVDCPGH--------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cEEEEEECCCh--------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEchhccCHH
Confidence 56789999993 2456677788889999999999997632 122222233322 2235789999999998754
Q ss_pred HH----HHHHHHHhh---CCCeEEEEecccCCC
Q psy9995 219 QR----CYWTKYFNS---VNVAVAFFSATNIYD 244 (595)
Q Consensus 219 ~~----~~w~~~~~~---~gi~vi~~SA~~~~~ 244 (595)
.. +.+.+.+.. .+.+++++||+++.+
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g 186 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYN 186 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC
Confidence 33 223333332 256789999998765
No 106
>PRK00089 era GTPase Era; Reviewed
Probab=98.64 E-value=3.4e-08 Score=102.66 Aligned_cols=59 Identities=37% Similarity=0.621 Sum_probs=49.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE-EEc-C-CceEEEeCCCCccCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT-LFV-D-DELLLCDCPGLVMPS 381 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt-i~~-~-~~~~liDtPGl~~p~ 381 (595)
..|+++|.||||||||+|+|++.+...+++.|++|++... +.. + ..++++||||+..+.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 4689999999999999999999988889999999998543 322 2 479999999997554
No 107
>KOG1423|consensus
Probab=98.64 E-value=1.6e-07 Score=96.68 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=95.9
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhh----HHHHHHHHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKN----LDFWRQLWR 167 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern----~e~~rql~~ 167 (595)
-..+.|-.-||+|||++-|.+.+.--. +.+.=......|.||||++.+...+. ..+...-|.
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~ 151 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRD 151 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHH
Confidence 356788999999999999999865432 22222345567999999987653332 233446789
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH-----------------HHHHHHHHhhC
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ-----------------RCYWTKYFNSV 230 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~-----------------~~~w~~~~~~~ 230 (595)
++.++|+|+.|+|+.++-...++.+...+++. ..-|-|+|+||+|.+.... ..+|.+.|...
T Consensus 152 a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~ 230 (379)
T KOG1423|consen 152 AAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDV 230 (379)
T ss_pred HHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccC
Confidence 99999999999999877666677555555543 2578899999999765421 12344444322
Q ss_pred C--------------CeEEEEecccCCC
Q psy9995 231 N--------------VAVAFFSATNIYD 244 (595)
Q Consensus 231 g--------------i~vi~~SA~~~~~ 244 (595)
- -+++++||+.|+|
T Consensus 231 p~~~~~~~~~gwshfe~vF~vSaL~G~G 258 (379)
T KOG1423|consen 231 PSDEKWRTICGWSHFERVFMVSALYGEG 258 (379)
T ss_pred CcccccccccCcccceeEEEEecccccC
Confidence 1 1588899999887
No 108
>PRK09866 hypothetical protein; Provisional
Probab=98.62 E-value=4e-07 Score=102.47 Aligned_cols=101 Identities=14% Similarity=0.041 Sum_probs=69.9
Q ss_pred eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC----
Q psy9995 141 LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT---- 216 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~---- 216 (595)
.+.|+||||++...... +.+.+.+.+..+|+||+|+|+..+....+..+.+.++......|+++|+||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~---L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPH---LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CEEEEECCCCCCccchH---HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence 45799999998543221 12233347999999999999998777777777777774322249999999999976
Q ss_pred -HHHHHHHHH-HHhhCC---CeEEEEecccCCC
Q psy9995 217 -RKQRCYWTK-YFNSVN---VAVAFFSATNIYD 244 (595)
Q Consensus 217 -~~~~~~w~~-~~~~~g---i~vi~~SA~~~~~ 244 (595)
.+....+.. ++...+ ..++++||+.+.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~n 340 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYL 340 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Confidence 334444433 333322 3689999999877
No 109
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.62 E-value=3.9e-08 Score=108.38 Aligned_cols=59 Identities=36% Similarity=0.448 Sum_probs=50.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CCceEEEeCCCCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DDELLLCDCPGLVM 379 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~~~~liDtPGl~~ 379 (595)
..++|+++|.||||||||+|+|++.....|+..||+|+++... .+ +..+.++||||+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 4589999999999999999999998878899999999997643 33 34678999999863
No 110
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.62 E-value=1.1e-07 Score=93.54 Aligned_cols=136 Identities=14% Similarity=0.097 Sum_probs=83.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------H----hhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------E----FLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~----f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|++||+++.+.+...+-. . ...|.+. .+.+.||+|+...+.....+........++.+|
T Consensus 3 I~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad 82 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSR 82 (198)
T ss_pred EEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCC
Confidence 345678999999999998754321 1 1235553 456899999754221122233344456688999
Q ss_pred eEEEEEeCCCCCCCCc-hHHHHHHHHh----CCCCcEEEEEeCCCCCCHHHH--HHHHHHHh-hCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRC-EDLERYVKEV----SPHKRNMILLNKADLLTRKQR--CYWTKYFN-SVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~-~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~-~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++.. ..+.+.+... ..+.|+|||.||+|+...... .....+.. ..+..++.+||+++.+
T Consensus 83 ~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~ 161 (198)
T cd04142 83 AFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH 161 (198)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCC
Confidence 9999999998866532 1122222222 245799999999999543211 11111222 2367889999999876
No 111
>KOG0055|consensus
Probab=98.61 E-value=1e-08 Score=121.70 Aligned_cols=126 Identities=25% Similarity=0.274 Sum_probs=102.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhh
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMR 401 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lr 401 (595)
.-++++||.+|+||||+|..|.+.+ ..+.+.+.+| |-...+ +.+..||
T Consensus 1016 GqTvALVG~SGsGKSTvI~LLeRfY-----------------dp~~G~V~ID--g~dik~-------------lnl~~LR 1063 (1228)
T KOG0055|consen 1016 GQTVALVGPSGSGKSTVISLLERFY-----------------DPDAGKVKID--GVDIKD-------------LNLKWLR 1063 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-----------------CCCCCeEEEC--Cccccc-------------CCHHHHH
Confidence 3579999999999999999999866 6678889999 876665 6789999
Q ss_pred hhhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 402 DHVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 402 d~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
.+++.|++-.-++..++.|| .||.......+..++.+.+++++|+..++.. ||--++|||.|+.+.||+||+
T Consensus 1064 ~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred HhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 99999999888999999999 7994222223334445667889999988876 899999999999999999997
Q ss_pred HHHhCCcee
Q psy9995 474 DFVNGHLLY 482 (595)
Q Consensus 474 D~~~GKL~~ 482 (595)
+ =|++.
T Consensus 1144 n---PkILL 1149 (1228)
T KOG0055|consen 1144 N---PKILL 1149 (1228)
T ss_pred C---CCeee
Confidence 5 45543
No 112
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.59 E-value=1.5e-07 Score=97.43 Aligned_cols=123 Identities=18% Similarity=0.087 Sum_probs=84.2
Q ss_pred cCCCCCCCCcCCCHHHHHHH----------------------HHH---------HhhhhcCeeeEEEeCCCcccChhhhh
Q psy9995 110 KIPRRPKWDKNTTAEQLQAM----------------------ERD---------EFLQWRRELNLLQEEDGLVITPYEKN 158 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~----------------------Er~---------~f~~wrg~~~~L~DT~Gi~~t~~ern 158 (595)
.|-.+|+.||+|+.|.|+.. |++ ..++|.+..+.|+||||...
T Consensus 3 ~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d------ 76 (270)
T cd01886 3 GIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD------ 76 (270)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH------
Confidence 45567888999999988632 111 45679999999999999642
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--H-HHHHHHHHHhhCCC-eE
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR--K-QRCYWTKYFNSVNV-AV 234 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~--~-~~~~w~~~~~~~gi-~v 234 (595)
+..+....+..+|++|+|+|+..........+.+++. ..++|.|+++||+|+... + ......+.+...-+ .+
T Consensus 77 --f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~--~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~ 152 (270)
T cd01886 77 --FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQAD--RYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQ 152 (270)
T ss_pred --HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEE
Confidence 3455677899999999999998876544445555554 357899999999999642 2 22333444432212 34
Q ss_pred EEEecccC
Q psy9995 235 AFFSATNI 242 (595)
Q Consensus 235 i~~SA~~~ 242 (595)
+++|+...
T Consensus 153 ~Pisa~~~ 160 (270)
T cd01886 153 LPIGEEDD 160 (270)
T ss_pred eccccCCC
Confidence 67777543
No 113
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.59 E-value=1.6e-07 Score=88.23 Aligned_cols=125 Identities=17% Similarity=0.041 Sum_probs=80.2
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH-----------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD-----------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~-----------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.|-..|+.|||++.+.|...... ....+.+..+.+.||+|... +.......+..+
T Consensus 3 ~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~~ 74 (167)
T cd04160 3 LILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES--------LRSLWDKYYAEC 74 (167)
T ss_pred EEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh--------hHHHHHHHhCCC
Confidence 34568999999999998764221 12345677888999999631 111223468899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHH---HHHHHHHHHh----hCCCeEEEEecc
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRK---QRCYWTKYFN----SVNVAVAFFSAT 240 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~---~~~~w~~~~~----~~gi~vi~~SA~ 240 (595)
|++++|+|+.++... .....++..+ ..+.|+++|+||+|+.+.. +...+.+.+. ..+.+++.+||+
T Consensus 75 ~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 152 (167)
T cd04160 75 HAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSAL 152 (167)
T ss_pred CEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCC
Confidence 999999999876432 1222222221 1368999999999986542 3333332211 123478899999
Q ss_pred cCCC
Q psy9995 241 NIYD 244 (595)
Q Consensus 241 ~~~~ 244 (595)
++.+
T Consensus 153 ~g~g 156 (167)
T cd04160 153 EGTG 156 (167)
T ss_pred CCcC
Confidence 9876
No 114
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.59 E-value=9.1e-09 Score=116.63 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=100.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+||||++|.|++-. ....+-+++| |..... ++.+.+|.
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~-----------------~~~~G~I~id--g~dI~~-------------i~~~~lr~ 403 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLY-----------------DPTSGEILID--GIDIRD-------------ISLDSLRK 403 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC-----------------CCCCCeEEEC--CEehhh-------------cCHHHHHH
Confidence 578999999999999999999865 4445666777 876554 56788999
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.|.+-..+++.++.+| .||.+.....+.....+...++||+..++.. +|...+|||.++...||++|++
T Consensus 404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 9998888888899999988 6887543322333333444678888877543 7888999999999999999987
Q ss_pred HHhCCce-eecCCCCCChh
Q psy9995 475 FVNGHLL-YCQAPPGVPQE 492 (595)
Q Consensus 475 ~~~GKL~-~~~~PP~~~~~ 492 (595)
= +++ .-.+=...|..
T Consensus 484 ~---~ILILDEaTSalD~~ 499 (567)
T COG1132 484 P---PILILDEATSALDTE 499 (567)
T ss_pred C---CEEEEeccccccCHH
Confidence 6 554 33444445543
No 115
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.58 E-value=4.2e-07 Score=90.84 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=68.0
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCC----C---CchHHHHHHHHhCCCCcE
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLL----F---RCEDLERYVKEVSPHKRN 205 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~----~---~~~~Le~~lk~v~~~K~~ 205 (595)
....|.+..+.++||||.. .++..+...+..+|++|+|+|+.++.. . .......++.. ...+|+
T Consensus 70 ~~~~~~~~~i~liDtpG~~--------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 140 (219)
T cd01883 70 AKFETEKYRFTILDAPGHR--------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LGVKQL 140 (219)
T ss_pred EEEeeCCeEEEEEECCChH--------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cCCCeE
Confidence 4467899999999999952 234556667888999999999987521 1 11112222221 223688
Q ss_pred EEEEeCCCCCC----HHHHH----HHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 206 MILLNKADLLT----RKQRC----YWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 206 ILVlNK~DLl~----~~~~~----~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
|+|+||+|+.. ..... .+..++...+ ++++++||+++.+.
T Consensus 141 iivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 141 IVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred EEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCC
Confidence 89999999983 22222 2222344433 46899999999874
No 116
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.58 E-value=3.5e-08 Score=88.07 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=72.1
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhh-HHHHHHHHHHHhhcCeE
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKN-LDFWRQLWRVIERSDVI 175 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern-~e~~rql~~vie~sDvV 175 (595)
|=.+|+.||||+.|.|.+.... ....+.+..+.|+||||+.......+ ...++++.+.+..+|++
T Consensus 4 iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~i 83 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLI 83 (116)
T ss_dssp EEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEE
T ss_pred EECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEE
Confidence 4568999999999999974322 12236677889999999877544333 24567777788999999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNK 211 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK 211 (595)
++|+|+..+.......+.++++ .++|+++|+||
T Consensus 84 i~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 84 IYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp EEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999998855433344545553 57999999998
No 117
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.57 E-value=4.5e-07 Score=84.93 Aligned_cols=126 Identities=12% Similarity=0.045 Sum_probs=78.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc---CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR---RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr---g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
+.|-..|+.||+++.+.|...+-. ....+. +..+.++||||... + ..++ ...+..+
T Consensus 3 i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~--~---~~~~---~~~~~~~ 74 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA--F---TNMR---ARGASLT 74 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHH--H---HHHH---HHHHhhc
Confidence 456678999999999999865421 122343 56788999999521 1 1122 2356789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH--HH-HHHHHHHh------hCCCeEEEEecccCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK--QR-CYWTKYFN------SVNVAVAFFSATNIY 243 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~--~~-~~w~~~~~------~~gi~vi~~SA~~~~ 243 (595)
|++++|+|+.++..........++. ..++|+++|+||+|+.... .. .....+.. ...++++.+||+++.
T Consensus 75 d~il~v~d~~~~~~~~~~~~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 75 DIAILVVAADDGVMPQTIEAIKLAK--AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHH--HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 9999999998765322222233343 3578999999999997532 11 11212111 112467889988776
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 153 g 153 (168)
T cd01887 153 G 153 (168)
T ss_pred C
Confidence 5
No 118
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.57 E-value=8e-08 Score=88.45 Aligned_cols=56 Identities=34% Similarity=0.459 Sum_probs=48.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEE--c-CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLF--V-DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~--~-~~~~~liDtPGl~ 378 (595)
++|+++|.+|+|||||+|+|++.....++..||+|.++.... . +..+.++||||+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 60 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIR 60 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcC
Confidence 579999999999999999999988778899999999876433 2 3468999999985
No 119
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.57 E-value=6.3e-07 Score=97.88 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=71.9
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
.+.+|.+..+.|+||||.. .+.+.+...+..+|++|+|+|+..+..........++..+ ..+++|+|+||+
T Consensus 73 ~~~~~~~~~~~liDtPGh~--------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~ 143 (406)
T TIGR02034 73 RYFSTDKRKFIVADTPGHE--------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKM 143 (406)
T ss_pred EEEccCCeEEEEEeCCCHH--------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEec
Confidence 5567888899999999942 3455666788999999999999988765554444444432 235688899999
Q ss_pred CCCCHH--HH----HHHHHHHhhCC---CeEEEEecccCCCC
Q psy9995 213 DLLTRK--QR----CYWTKYFNSVN---VAVAFFSATNIYDD 245 (595)
Q Consensus 213 DLl~~~--~~----~~w~~~~~~~g---i~vi~~SA~~~~~~ 245 (595)
|+.+.. .. ..+..++...+ ++++++||.++.+.
T Consensus 144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni 185 (406)
T TIGR02034 144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNV 185 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCC
Confidence 997522 11 22333333333 36899999998773
No 120
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.57 E-value=5.2e-08 Score=103.71 Aligned_cols=56 Identities=38% Similarity=0.558 Sum_probs=47.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc--CCceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV--DDELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~--~~~~~liDtPGl~~ 379 (595)
-.|+|||+||||||||||+|++.+ ..|++.|++|.+.+. +.+ ...++++||||+..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 359999999999999999999865 679999999999764 444 24699999999974
No 121
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.55 E-value=6.3e-08 Score=105.96 Aligned_cols=55 Identities=33% Similarity=0.477 Sum_probs=47.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec--CCceEEEeCCCCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV--DDELLLCDCPGLVM 379 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~--~~~~~liDtPGl~~ 379 (595)
.|++||+||||||||||+|++.+ ..|++.|++|.+...- .+ +..+.++|+||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 69999999999999999999765 6789999999987653 33 46799999999974
No 122
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.54 E-value=6.7e-08 Score=107.35 Aligned_cols=56 Identities=38% Similarity=0.548 Sum_probs=47.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~ 379 (595)
..|+|||+||||||||||+|++.+ ..+++.||+|.+... +.. +..++++||||++.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlie 218 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIP 218 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCcc
Confidence 579999999999999999999864 678999999998654 333 44789999999974
No 123
>PRK12735 elongation factor Tu; Reviewed
Probab=98.53 E-value=3.9e-07 Score=99.21 Aligned_cols=126 Identities=11% Similarity=0.085 Sum_probs=81.8
Q ss_pred ccCCCCCCCCcCCCHHHHHH--------------------HHHH---------HhhhhcCeeeEEEeCCCcccChhhhhH
Q psy9995 109 LKIPRRPKWDKNTTAEQLQA--------------------MERD---------EFLQWRRELNLLQEEDGLVITPYEKNL 159 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~--------------------~Er~---------~f~~wrg~~~~L~DT~Gi~~t~~ern~ 159 (595)
+.|-.+|+.||||+.+.|+. .|++ ...+|.+..+.|+||||..
T Consensus 15 i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-------- 86 (396)
T PRK12735 15 VGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-------- 86 (396)
T ss_pred EEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH--------
Confidence 34556677777777777764 1222 1234566778899999963
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEE-EEEeCCCCCCHHHHH-----HHHHHHhhCC--
Q psy9995 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNM-ILLNKADLLTRKQRC-----YWTKYFNSVN-- 231 (595)
Q Consensus 160 e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~I-LVlNK~DLl~~~~~~-----~w~~~~~~~g-- 231 (595)
++.+.++..+..+|++++|+|+..............+. ..+.|.| +|+||+|+++.+++. +..+++...+
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~--~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR--QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 56678888899999999999998755433333333333 2456765 579999998643322 2333343332
Q ss_pred ---CeEEEEecccCCC
Q psy9995 232 ---VAVAFFSATNIYD 244 (595)
Q Consensus 232 ---i~vi~~SA~~~~~ 244 (595)
++++++||.++.+
T Consensus 165 ~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 165 GDDTPIIRGSALKALE 180 (396)
T ss_pred cCceeEEecchhcccc
Confidence 5789999988754
No 124
>PRK04213 GTP-binding protein; Provisional
Probab=98.53 E-value=2.9e-07 Score=89.85 Aligned_cols=133 Identities=13% Similarity=0.100 Sum_probs=80.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-----------HhhhhcCeeeEEEeCCCccc--ChhhhhHHHHHH----HHH-H
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-----------EFLQWRRELNLLQEEDGLVI--TPYEKNLDFWRQ----LWR-V 168 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-----------~f~~wrg~~~~L~DT~Gi~~--t~~ern~e~~rq----l~~-v 168 (595)
..+.|-.+||.||||+.|.|...+-. ....|. .+.+.||||+-. ...++..+-++. .++ .
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDN 87 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhh
Confidence 45677789999999999999764311 011122 467899999632 111111122232 222 4
Q ss_pred HhhcCeEEEEEeCCCCCCC-----------CchHHHHHHHHhCCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhC-----
Q psy9995 169 IERSDVIVQIVDARNPLLF-----------RCEDLERYVKEVSPHKRNMILLNKADLLTRK--QRCYWTKYFNSV----- 230 (595)
Q Consensus 169 ie~sDvVl~VvDAR~Pl~~-----------~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~----- 230 (595)
+..+|+|++|+|+...... .+..+...+. ..+.|+++|+||+|+.+.. ....|.+.+...
T Consensus 88 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 165 (201)
T PRK04213 88 ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR--ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQ 165 (201)
T ss_pred hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH--HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccc
Confidence 5678999999998643211 0122334443 3478999999999997654 334454444210
Q ss_pred -CCeEEEEecccCCC
Q psy9995 231 -NVAVAFFSATNIYD 244 (595)
Q Consensus 231 -gi~vi~~SA~~~~~ 244 (595)
+..++.+||+++ +
T Consensus 166 ~~~~~~~~SA~~g-g 179 (201)
T PRK04213 166 WQDIIAPISAKKG-G 179 (201)
T ss_pred cCCcEEEEecccC-C
Confidence 125789999998 7
No 125
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.53 E-value=7.2e-07 Score=102.72 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=70.8
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
.+.+|.+..+.|+||||.. .+.+.+...+..+|++|+|+|+..+..........++... ..+++|||+||+
T Consensus 97 ~~~~~~~~~~~liDtPG~~--------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~ 167 (632)
T PRK05506 97 RYFATPKRKFIVADTPGHE--------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKM 167 (632)
T ss_pred eEEccCCceEEEEECCChH--------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEec
Confidence 3556778889999999952 2344455678999999999999887765444444444432 236788999999
Q ss_pred CCCC--HHHHH----HHHHHHhhCC---CeEEEEecccCCCCC
Q psy9995 213 DLLT--RKQRC----YWTKYFNSVN---VAVAFFSATNIYDDI 246 (595)
Q Consensus 213 DLl~--~~~~~----~w~~~~~~~g---i~vi~~SA~~~~~~~ 246 (595)
|+++ .+... .+.+++...+ ++++++||+++.+..
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~ 210 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVV 210 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcc
Confidence 9985 22222 2223333444 358999999988743
No 126
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.52 E-value=1.3e-07 Score=87.66 Aligned_cols=56 Identities=46% Similarity=0.601 Sum_probs=49.2
Q ss_pred EEEeecCCCCcchHhhhhcC-cceeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 325 IGLVGYPNVGKSSTINALLN-AKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 325 i~lvG~pnvGKSSliN~L~~-~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
|+++|.+|+|||||+|+|++ .....++.++|.|.....+..+..+.++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 79999999999999999993 555678899999999888888889999999998644
No 127
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.52 E-value=1.1e-06 Score=97.71 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=69.5
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
.+.+|.+..+.|+||||.. .+.+.+...+..+|++|+|+|+..+..........++..+ ..+++|+|+||+
T Consensus 100 ~~~~~~~~~i~~iDTPGh~--------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKi 170 (474)
T PRK05124 100 RYFSTEKRKFIIADTPGHE--------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKM 170 (474)
T ss_pred EEeccCCcEEEEEECCCcH--------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEee
Confidence 3456888889999999931 3455666678999999999999887654333333333322 235788999999
Q ss_pred CCCCH--HHHHHHH----HHHhhC----CCeEEEEecccCCCC
Q psy9995 213 DLLTR--KQRCYWT----KYFNSV----NVAVAFFSATNIYDD 245 (595)
Q Consensus 213 DLl~~--~~~~~w~----~~~~~~----gi~vi~~SA~~~~~~ 245 (595)
|+++. +...... .++... ..+++++||+++.+.
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni 213 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNV 213 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCc
Confidence 99842 2222222 223322 367899999998774
No 128
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.51 E-value=1e-06 Score=100.93 Aligned_cols=124 Identities=11% Similarity=0.107 Sum_probs=84.7
Q ss_pred CCCCCCCCcCCCHHHHHH-------HHHH-------Hhhhh---cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 111 IPRRPKWDKNTTAEQLQA-------MERD-------EFLQW---RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~-------~Er~-------~f~~w---rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-..++.|||++.++|.+ .|++ .|..+ .+..+.|+||||. ..+.+.+...+..+|
T Consensus 5 ~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--------e~fi~~m~~g~~~~D 76 (614)
T PRK10512 5 TAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--------EKFLSNMLAGVGGID 76 (614)
T ss_pred EECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--------HHHHHHHHHHhhcCC
Confidence 346789999999999974 2332 12222 4567789999995 234566777889999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCCCHHHH----HHHHHHHhhCC---CeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLLTRKQR----CYWTKYFNSVN---VAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl~~~~~----~~w~~~~~~~g---i~vi~~SA~~~~~ 244 (595)
++++|+|+..+......+....+.. .+.+ .|||+||+|+++++.. ..+.+++...+ .+++++||+++.+
T Consensus 77 ~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 77 HALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999999998765443343344442 2445 5799999999875433 33444454433 5789999999876
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.51 E-value=8.8e-08 Score=90.10 Aligned_cols=54 Identities=39% Similarity=0.608 Sum_probs=43.9
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CC-ceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DD-ELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~-~~~liDtPGl~ 378 (595)
.|++||.+|||||||+|+|.+.. +.|+..||+|...+. +.. +. .+.++||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCccc
Confidence 48999999999999999999865 578889999877543 232 33 78999999985
No 130
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.50 E-value=1.1e-06 Score=81.40 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=83.5
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChh-----hhhHHHHHHHHHHHhhc
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPY-----EKNLDFWRQLWRVIERS 172 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~-----ern~e~~rql~~vie~s 172 (595)
+-..++.|||++.+.|...... .+..+.+ ...++||+|+..... +.-...+.+.....+.+
T Consensus 4 l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (170)
T cd01876 4 FAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENL 82 (170)
T ss_pred EEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhh
Confidence 3457889999999999832221 1122332 667899999765421 11122333444445678
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHH----Hh--hCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKY----FN--SVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~----~~--~~gi~vi~~SA~~~~~ 244 (595)
+.+++|+|+..+.......+.+++.. .+.|+++|+||+|++++......... +. ....+++++||+.+.+
T Consensus 83 ~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 83 KGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred hEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 89999999988765555556667764 35789999999999876554333322 22 2245788999987654
No 131
>PLN03127 Elongation factor Tu; Provisional
Probab=98.49 E-value=5.5e-07 Score=99.46 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=66.2
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcE-EEEEeCCC
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRN-MILLNKAD 213 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~-ILVlNK~D 213 (595)
.+|.+..+.|+||||.. .++..+...+..+|++++|+|+..+.......+..++. ..+.|. |+|+||+|
T Consensus 119 ~~~~~~~i~~iDtPGh~--------~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~--~~gip~iIvviNKiD 188 (447)
T PLN03127 119 YETAKRHYAHVDCPGHA--------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR--QVGVPSLVVFLNKVD 188 (447)
T ss_pred EcCCCeEEEEEECCCcc--------chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEEEEEeec
Confidence 34566778999999974 35677777778899999999998876554555555555 345674 78899999
Q ss_pred CCCHHHHHH-----HHHHHhhC-----CCeEEEEecccC
Q psy9995 214 LLTRKQRCY-----WTKYFNSV-----NVAVAFFSATNI 242 (595)
Q Consensus 214 Ll~~~~~~~-----w~~~~~~~-----gi~vi~~SA~~~ 242 (595)
+++.+++.+ +.+++... .++++++||..+
T Consensus 189 lv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa 227 (447)
T PLN03127 189 VVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSA 227 (447)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEecccee
Confidence 987543322 22223221 256788888654
No 132
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.49 E-value=1.5e-07 Score=87.80 Aligned_cols=59 Identities=36% Similarity=0.504 Sum_probs=48.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CCceEEEeCCCCccC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DDELLLCDCPGLVMP 380 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~~~~liDtPGl~~p 380 (595)
.++|+++|.+|+|||||+|+|++.....++..||+|+..... .. +..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 478999999999999999999998777788899999886432 22 456889999998644
No 133
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.49 E-value=1.3e-06 Score=87.99 Aligned_cols=77 Identities=10% Similarity=0.058 Sum_probs=56.9
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh--hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE--RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie--~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
.+..+..+.|+||||.. .+.+...+.+. .+|++++|+|++.+....+..+..++. ..+.|+++|+||+
T Consensus 79 ~~~~~~~i~liDtpG~~--------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~--~~~ip~ivvvNK~ 148 (224)
T cd04165 79 CEKSSKLVTFIDLAGHE--------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLAL--ALNIPVFVVVTKI 148 (224)
T ss_pred eeeCCcEEEEEECCCcH--------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEECc
Confidence 34567889999999953 23445555554 799999999999887655555666665 3578999999999
Q ss_pred CCCCHHHHH
Q psy9995 213 DLLTRKQRC 221 (595)
Q Consensus 213 DLl~~~~~~ 221 (595)
|+++.....
T Consensus 149 D~~~~~~~~ 157 (224)
T cd04165 149 DLAPANILQ 157 (224)
T ss_pred cccCHHHHH
Confidence 998765443
No 134
>PRK12736 elongation factor Tu; Reviewed
Probab=98.48 E-value=7.4e-07 Score=96.97 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCC
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLL 215 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl 215 (595)
+.+..+.|+||||.. ++.+.+...+..+|++++|+|+..+.......+..++.. .+.| .|+++||+|++
T Consensus 72 ~~~~~i~~iDtPGh~--------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 72 TEKRHYAHVDCPGHA--------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLV 141 (394)
T ss_pred CCCcEEEEEECCCHH--------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCc
Confidence 456678899999942 455667777889999999999998765555555555553 3566 57889999998
Q ss_pred CHHHHH-----HHHHHHhhCC-----CeEEEEecccCC
Q psy9995 216 TRKQRC-----YWTKYFNSVN-----VAVAFFSATNIY 243 (595)
Q Consensus 216 ~~~~~~-----~w~~~~~~~g-----i~vi~~SA~~~~ 243 (595)
+.+++. ++.+++...+ ++++++||+++.
T Consensus 142 ~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 142 DDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 654332 2333444443 478999999873
No 135
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.48 E-value=1.2e-07 Score=87.47 Aligned_cols=53 Identities=36% Similarity=0.483 Sum_probs=44.8
Q ss_pred EEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 326 GLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 326 ~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
+++|.+|||||||+|+|++.....++..|++|+....... +..+.++||||+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~ 56 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIE 56 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCC
Confidence 4799999999999999999877788899999987654332 4568999999986
No 136
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.48 E-value=1.7e-07 Score=106.82 Aligned_cols=128 Identities=21% Similarity=0.141 Sum_probs=81.1
Q ss_pred CCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 113 RRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 113 rRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
..||.||||++|.|.+..-. ...+|.+..+.++||||... ........+++.. ...+.+|+|+.|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~-l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDY-LLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHH-HhhcCCCEEEEE
Confidence 37999999999999865321 23446677788999999753 2221122333332 223579999999
Q ss_pred EeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHH-hhCCCeEEEEecccCCCC
Q psy9995 179 VDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYF-NSVNVAVAFFSATNIYDD 245 (595)
Q Consensus 179 vDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~-~~~gi~vi~~SA~~~~~~ 245 (595)
+|+.+.. ++..+...+. +.++|+++|+||+|+........-.+.+ +..|.+++.+||+++.+.
T Consensus 80 vDat~le--r~l~l~~ql~--~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 80 VDASNLE--RNLYLTLQLL--ELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred ecCCcch--hhHHHHHHHH--hcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCH
Confidence 9998632 2222222222 4578999999999986432211111222 234789999999998874
No 137
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.48 E-value=1.4e-07 Score=88.75 Aligned_cols=54 Identities=41% Similarity=0.511 Sum_probs=44.5
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
+|+++|.||||||||+|+|++.. ..++..|++|+....-.. +..+.++||||+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcC
Confidence 68999999999999999999865 567778999887764332 3578999999985
No 138
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.48 E-value=2.1e-07 Score=87.06 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=77.3
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHH-HHHhhcCeEEEE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLW-RVIERSDVIVQI 178 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~-~vie~sDvVl~V 178 (595)
.+-..|+.||+++.+.|...+.. ....+.+..+.+.||+|... .+.+| ..++.+|++|+|
T Consensus 3 ~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 3 LILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTS---------IRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred EEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHH---------HHHHHHHHhcCCCEEEEE
Confidence 34467888888888887433221 11334566788999999631 12233 357899999999
Q ss_pred EeCCCCCCCC--chHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 179 VDARNPLLFR--CEDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 179 vDAR~Pl~~~--~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
+|+.++..+. ...+...++.. ..++|++||+||+|+.......+....+. ..+.+++++||+++.+
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 9998764321 12222222211 13689999999999965322233333331 1234689999999877
No 139
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.48 E-value=4.3e-07 Score=85.60 Aligned_cols=123 Identities=12% Similarity=0.189 Sum_probs=79.4
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHHH---------h------hhhcCeeeEEEeCCCcccChhhhhHHHHHHH-HHHHhhcC
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERDE---------F------LQWRRELNLLQEEDGLVITPYEKNLDFWRQL-WRVIERSD 173 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~~---------f------~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql-~~vie~sD 173 (595)
.|-..|+.||+++.+.+...+-.. + .......+.+.||+|.. + ++.+ ...+..+|
T Consensus 4 ~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----~----~~~~~~~~~~~~d 74 (161)
T cd04124 4 ILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE-----R----FQTMHASYYHKAH 74 (161)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch-----h----hhhhhHHHhCCCC
Confidence 445678999999999887543210 0 11223345688999942 1 1222 23678999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++.. +..++..+ ..+.|+|+|+||+|+.... ......+....+.+++.+||+++.+
T Consensus 75 ~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~g 145 (161)
T cd04124 75 ACILVFDVTRKITYKN--LSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVSAADGTN 145 (161)
T ss_pred EEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999988765432 33444333 3468999999999985432 2233344444567889999998876
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.47 E-value=8.8e-08 Score=88.72 Aligned_cols=51 Identities=39% Similarity=0.571 Sum_probs=43.0
Q ss_pred EeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 327 lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
++|.+|||||||+|+|++.. ..++.+||+|.+++. +.+ +..+.++||||+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~ 54 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTY 54 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCcc
Confidence 58999999999999999876 788899999998764 333 3578999999986
No 141
>KOG1489|consensus
Probab=98.47 E-value=5.6e-07 Score=93.22 Aligned_cols=132 Identities=20% Similarity=0.202 Sum_probs=83.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH----Hhhhh---------cCee-eEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD----EFLQW---------RREL-NLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~----~f~~w---------rg~~-~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-.-.-||+||||++++|.+.--+ +|... .... +.+-|-|||+..-. .|.-+=-+..+-||++++
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh-~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAH-MNKGLGYKFLRHIERCKG 277 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCcccccccc-ccCcccHHHHHHHHhhce
Confidence 445577999999999999875433 34433 3333 67889999987432 221112234456899999
Q ss_pred EEEEEeCCCCCCCCch--HHHHHHHHh------CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCE--DLERYVKEV------SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~--~Le~~lk~v------~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|||...+.. +++ .+..+..++ -..+|.+||+||+|+...++. ..+.++++ +..|+.+||+.+++
T Consensus 278 l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq--~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 278 LLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ--NPHVVPVSAKSGEG 354 (366)
T ss_pred EEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC--CCcEEEeeeccccc
Confidence 999999987633 221 222222222 246899999999998533321 34444442 33589999988755
No 142
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.47 E-value=2.3e-07 Score=85.49 Aligned_cols=59 Identities=36% Similarity=0.546 Sum_probs=47.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMP 380 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p 380 (595)
..+|+++|.||+|||||+|+|++.....++..+++|++...... ...+.++||||+..+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 36799999999999999999999887777888888887544222 246889999998644
No 143
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.47 E-value=3.7e-07 Score=85.00 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=78.5
Q ss_pred CCCCCCCCcCCCHHHHHHHHH--H----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 111 IPRRPKWDKNTTAEQLQAMER--D----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er--~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
+-..|+.||+++.+.|...+. . ....+.+..+.+.||+|... ...+|+ ..+..+|.+|+|
T Consensus 4 ~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~-----~~~~~~---~~~~~~d~ii~v 75 (162)
T cd04157 4 VVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGK-----YRGLWE---HYYKNIQGIIFV 75 (162)
T ss_pred EECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHh-----hHHHHH---HHHccCCEEEEE
Confidence 446788999999998886531 1 11235566788999999531 112233 357899999999
Q ss_pred EeCCCCCCCCc--hHHHHHHHH--h-CCCCcEEEEEeCCCCCCHHHHHHHHHHHhh-----CCCeEEEEecccCCC
Q psy9995 179 VDARNPLLFRC--EDLERYVKE--V-SPHKRNMILLNKADLLTRKQRCYWTKYFNS-----VNVAVAFFSATNIYD 244 (595)
Q Consensus 179 vDAR~Pl~~~~--~~Le~~lk~--v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-----~gi~vi~~SA~~~~~ 244 (595)
+|+.++..+.. ..+..++.. + ..+.|++||+||+|+.+......+...+.- ....++.+||+++.+
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEG 151 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence 99998764321 123333221 1 246899999999999754332333333311 122467799998876
No 144
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.47 E-value=6.5e-07 Score=97.37 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=66.5
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEE-EEEeCCCC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNM-ILLNKADL 214 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~I-LVlNK~DL 214 (595)
++.+..+.|+||||.. .+.+.+...+..+|++++|+|++.+..........++. ..+.|.+ +|+||+|+
T Consensus 71 ~~~~~~~~liDtpGh~--------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~--~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 71 ETENRHYAHVDCPGHA--------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLAR--QVGVPYIVVFLNKCDM 140 (394)
T ss_pred cCCCEEEEEEECCchH--------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCEEEEEEEeccc
Confidence 4556778899999963 34566677788999999999999865443334444444 2356655 68999999
Q ss_pred CCHHHHH-----HHHHHHhhCC-----CeEEEEecccCC
Q psy9995 215 LTRKQRC-----YWTKYFNSVN-----VAVAFFSATNIY 243 (595)
Q Consensus 215 l~~~~~~-----~w~~~~~~~g-----i~vi~~SA~~~~ 243 (595)
++.+++. +..+++...+ ++++++||.++.
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 8754322 2334444443 578999998764
No 145
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.47 E-value=3.8e-07 Score=92.23 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=55.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
+.+-..|+.||||+++.|.+.... ....|.+..+.+.||||+... .+....+.++...+++.+|++
T Consensus 3 v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~-~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG-AADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccc-cccchhHHHHHHHhhccCCEE
Confidence 345578999999999999976531 122367778899999997542 222334567777889999999
Q ss_pred EEEEeCCCCC
Q psy9995 176 VQIVDARNPL 185 (595)
Q Consensus 176 l~VvDAR~Pl 185 (595)
++|+|+.++.
T Consensus 82 l~V~D~t~~~ 91 (233)
T cd01896 82 LMVLDATKPE 91 (233)
T ss_pred EEEecCCcch
Confidence 9999987654
No 146
>PRK00049 elongation factor Tu; Reviewed
Probab=98.47 E-value=6e-07 Score=97.75 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=69.7
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEE-EEEeCCCC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNM-ILLNKADL 214 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~I-LVlNK~DL 214 (595)
+|.+..+.|+||||.. ++.+.+...+..+|++++|+|+..+.......+..++.. .+.|.+ +++||+|+
T Consensus 71 ~~~~~~i~~iDtPG~~--------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 71 ETEKRHYAHVDCPGHA--------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDM 140 (396)
T ss_pred cCCCeEEEEEECCCHH--------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCC
Confidence 4567788899999963 567778888999999999999998766544455555553 467876 58999999
Q ss_pred CCHHHHH-----HHHHHHhhCC-----CeEEEEecccCCC
Q psy9995 215 LTRKQRC-----YWTKYFNSVN-----VAVAFFSATNIYD 244 (595)
Q Consensus 215 l~~~~~~-----~w~~~~~~~g-----i~vi~~SA~~~~~ 244 (595)
++.++.. +..++|...+ ++++++||.++.+
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 8643321 2333444332 5788999987643
No 147
>PLN03126 Elongation factor Tu; Provisional
Probab=98.46 E-value=1e-06 Score=97.97 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=90.5
Q ss_pred cccCCCCCCCCcCCCHHHHHH--------------------HHHH---------HhhhhcCeeeEEEeCCCcccChhhhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQA--------------------MERD---------EFLQWRRELNLLQEEDGLVITPYEKN 158 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~--------------------~Er~---------~f~~wrg~~~~L~DT~Gi~~t~~ern 158 (595)
.+.|-..++.||||+.+.|+. +||+ ...+|.+..+.|+||||..
T Consensus 83 ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~------- 155 (478)
T PLN03126 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA------- 155 (478)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH-------
Confidence 367899999999999999983 3444 2345778888999999953
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCCCHHHH-H----HHHHHHhhC--
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLLTRKQR-C----YWTKYFNSV-- 230 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl~~~~~-~----~w~~~~~~~-- 230 (595)
.+.+++...+..+|++++|+||..............+. ..+.| .|+++||+|+++.+++ + +..+++...
T Consensus 156 -~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~--~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 156 -DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK--QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred -HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH--HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 35677788888999999999999876543334444443 23566 6789999999875432 1 333445443
Q ss_pred ---CCeEEEEecccCCC
Q psy9995 231 ---NVAVAFFSATNIYD 244 (595)
Q Consensus 231 ---gi~vi~~SA~~~~~ 244 (595)
.++++++||.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 35688999988754
No 148
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.46 E-value=2e-07 Score=109.02 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=87.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH-------------HHhhhhcCeeeEEEeCCCcccC-h----hhhhHHHHHHHHHHH
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER-------------DEFLQWRRELNLLQEEDGLVIT-P----YEKNLDFWRQLWRVI 169 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er-------------~~f~~wrg~~~~L~DT~Gi~~t-~----~ern~e~~rql~~vi 169 (595)
.+.+-..||.||||++|.|.+... .....|.+..+.++||||+..- . ......+.+. ....
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~-~l~~ 83 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-YILS 83 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH-HHhc
Confidence 466778999999999999986422 1344677888999999997531 1 1111222222 2234
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHH-hhCCCeEEEEecccCCC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYF-NSVNVAVAFFSATNIYD 244 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~-~~~gi~vi~~SA~~~~~ 244 (595)
+.+|+|+.|+|+.+.. ++..+...+. +.++|+++|+||+|+........-.+.+ +..|.+++.+||.++.+
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~--e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~G 155 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLL--ELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRG 155 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHH--HcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCC
Confidence 5899999999998642 3333333444 3579999999999997543222222223 33588999999999877
No 149
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.46 E-value=3.5e-07 Score=86.70 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=85.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
++-|-.+|+.|||++.+.+...+-. ....+.+ ..+.+.||+|.. .+.......++.+
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~~ 77 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE--------SFRSITRSYYRGA 77 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHhccC
Confidence 4556788999999999999865421 1122343 456788999942 2233345577899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.+|.++ ..+..++.++ .++.|+|+|.||+|+.+... ......+....+..++.+||+.+.+
T Consensus 78 d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (168)
T cd01866 78 AGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASN 153 (168)
T ss_pred CEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999987654 3455565444 24678999999999974321 1222334445578889999988876
No 150
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.45 E-value=2.1e-07 Score=104.89 Aligned_cols=60 Identities=30% Similarity=0.380 Sum_probs=48.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCC-CCCceeeEEE--EcCCceEEEeCCCCccCC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSAT-PGKTKHFQTL--FVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~t-PG~TKh~Qti--~~~~~~~liDtPGl~~p~ 381 (595)
.++|++||.||||||||||+|++...+.+++. |++|+..... .-+..+.+|||||+....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence 47899999999999999999999988888776 6666643332 225678999999998653
No 151
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.45 E-value=5.1e-07 Score=84.10 Aligned_cols=126 Identities=15% Similarity=0.109 Sum_probs=82.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.|-.+|+.||+++.+.+....-. ....+.+ ..+.+.|++|.. .+.+.....+..+|
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~~~~~~d 74 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE--------RFRSITSSYYRGAV 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH--------HHHHHHHHHhCCCC
Confidence 445678999999999999754321 1233444 345688999931 22233445678899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+++|.++ ..+..++..+ ..+.|+++|+||+|+.... ......++....+.+++.+|+.++.+
T Consensus 75 ~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 149 (164)
T smart00175 75 GALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTN 149 (164)
T ss_pred EEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999987654 3344444432 2468999999999987532 11222233344578899999988765
No 152
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.45 E-value=8.9e-07 Score=100.87 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=86.2
Q ss_pred cCCCCCCCCcCCCHHHHHH-------HHHH---------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 110 KIPRRPKWDKNTTAEQLQA-------MERD---------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~-------~Er~---------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-..++.|||++.+.|.+ .|+. ....+.+..+.++||||. ..+.+.+...+..+|
T Consensus 4 ~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh--------e~f~~~~~~g~~~aD 75 (581)
T TIGR00475 4 ATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH--------EKFISNAIAGGGGID 75 (581)
T ss_pred EEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH--------HHHHHHHHhhhccCC
Confidence 3456889999999999974 2322 123455667889999994 245566677788999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCCCHHHHH----HHHHHHhhC----CCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLLTRKQRC----YWTKYFNSV----NVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl~~~~~~----~w~~~~~~~----gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++......+...++.. .+.+ +|+|+||+|+++.+... ...+++... +.+++++||+++.+
T Consensus 76 ~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 76 AALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 9999999998654332222233432 3556 99999999998865332 222333332 46789999999987
Q ss_pred CC
Q psy9995 245 DI 246 (595)
Q Consensus 245 ~~ 246 (595)
..
T Consensus 154 I~ 155 (581)
T TIGR00475 154 IG 155 (581)
T ss_pred ch
Confidence 43
No 153
>KOG1490|consensus
Probab=98.43 E-value=1.5e-07 Score=102.05 Aligned_cols=81 Identities=28% Similarity=0.324 Sum_probs=60.8
Q ss_pred HHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcC---CceEEEeCCCC
Q psy9995 301 EELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVD---DELLLCDCPGL 377 (595)
Q Consensus 301 ~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~---~~~~liDtPGl 377 (595)
+.|++.-+.+.+- +...+...++.+||||||||||++|.++... +.|.+.|.+||.+-.-+++ -.++++|||||
T Consensus 149 ~yLeqVrqhl~rl--PsIDp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGI 225 (620)
T KOG1490|consen 149 EYLEQVRQHLSRL--PAIDPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGI 225 (620)
T ss_pred HHHHHHHHHHhcC--CCCCCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccc
Confidence 3455544444332 4455666789999999999999999998655 8999999999987554443 36789999999
Q ss_pred ccCCccc
Q psy9995 378 VMPSFVF 384 (595)
Q Consensus 378 ~~p~f~~ 384 (595)
..+.+..
T Consensus 226 LD~plEd 232 (620)
T KOG1490|consen 226 LDRPEED 232 (620)
T ss_pred cCcchhh
Confidence 9887653
No 154
>KOG0055|consensus
Probab=98.43 E-value=7.5e-08 Score=114.45 Aligned_cols=135 Identities=23% Similarity=0.258 Sum_probs=105.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhh
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMR 401 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lr 401 (595)
.-.|++||.+|+||||+|+.|.+.+ ....+-+++| |..... +.+..+|
T Consensus 379 G~~valVG~SGsGKST~i~LL~Rfy-----------------dP~~G~V~id--G~di~~-------------~~~~~lr 426 (1228)
T KOG0055|consen 379 GQTVALVGPSGSGKSTLIQLLARFY-----------------DPTSGEVLID--GEDIRN-------------LNLKWLR 426 (1228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-----------------CCCCceEEEc--Cccchh-------------cchHHHH
Confidence 3578999999999999999999866 5667889999 776554 4677889
Q ss_pred hhhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 402 DHVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 402 d~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
..++.|.+-.-++..++.+| .||.+..+..+.+++.+..++++|+..+... +|.-++|||.++.+.||++++
T Consensus 427 ~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 427 SQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred hhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh
Confidence 99999988888888889998 7998654444444455566788888887765 888899999999999999998
Q ss_pred HHHhCCceee-cCCCCCCh
Q psy9995 474 DFVNGHLLYC-QAPPGVPQ 491 (595)
Q Consensus 474 D~~~GKL~~~-~~PP~~~~ 491 (595)
| =+++.. ++--..|+
T Consensus 507 ~---P~ILLLDEaTSaLD~ 522 (1228)
T KOG0055|consen 507 N---PKILLLDEATSALDA 522 (1228)
T ss_pred C---CCEEEecCcccccCH
Confidence 8 566544 33334444
No 155
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.42 E-value=1.8e-07 Score=99.42 Aligned_cols=56 Identities=38% Similarity=0.551 Sum_probs=46.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC--CceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD--DELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~--~~~~liDtPGl~~ 379 (595)
-.|++||+||||||||||+|++.+ ..|++.|++|.+.+. +.++ ..+.++||||+..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~ 217 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIE 217 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCccc
Confidence 358999999999999999999865 578999999998654 3443 5799999999974
No 156
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.42 E-value=3.1e-07 Score=87.43 Aligned_cols=131 Identities=19% Similarity=0.167 Sum_probs=83.1
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHHH----------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERDE----------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~~----------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
...+-+-..|+.|||++.+.+...+-.. ...+.+..+.+.||+|... ...+|+ ..+..+|++
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~-----~~~~~~---~~~~~~d~~ 85 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKT-----LRPYWR---NYFESTDAL 85 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHH-----HHHHHH---HHhCCCCEE
Confidence 3456778889999999999887553221 1224455678899999531 112233 357899999
Q ss_pred EEEEeCCCCCCCCc--hHHHHHHHH-hCCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRC--EDLERYVKE-VSPHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~--~~Le~~lk~-v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
++|+|+.++.++.. ..+..++.. ...+.|++||+||+|+.......+..+++. ..+++++.+||+++.+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999988754322 122222221 124689999999999965322233333332 2345789999999876
No 157
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.42 E-value=2.2e-07 Score=90.95 Aligned_cols=59 Identities=39% Similarity=0.477 Sum_probs=45.6
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CC-ceEEEeCCCCcc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DD-ELLLCDCPGLVM 379 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~-~~~liDtPGl~~ 379 (595)
+..++|+++|.+|||||||+|.|++.. +.++..|+.|..... +.. +. .+.++||||+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 456899999999999999999999865 556667777766543 332 22 789999999863
No 158
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.42 E-value=5.3e-07 Score=101.68 Aligned_cols=55 Identities=38% Similarity=0.562 Sum_probs=47.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE---EcCCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL---FVDDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti---~~~~~~~liDtPGl~ 378 (595)
.+|+++|.||||||||+|+|+|.+ ..|++-||+|-.-..- .-+..+.++|.||+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~Y 61 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTY 61 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcC
Confidence 579999999999999999999977 8999999999876543 235679999999997
No 159
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.42 E-value=3.9e-08 Score=110.49 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=93.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||+|.|+|.. ..+.+-+++| |..... + .+++|.
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~-----------------~p~~G~I~i~--g~~i~~-------------~-~~~lr~ 408 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLL-----------------DPLQGEVTLD--GVSVSS-------------L-QDELRR 408 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCcEEEEC--CEEhhh-------------H-HHHHHh
Confidence 468999999999999999999865 3455667788 654333 4 567888
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.|.+-...++.++.+| .||.+...+.+.....+....++++..++.+ +|...+|||.++...||++|+
T Consensus 409 ~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~- 487 (529)
T TIGR02868 409 RISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA- 487 (529)
T ss_pred heEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc-
Confidence 8888888888899999888 5764322221112222333456676665443 677889999999999999996
Q ss_pred HHhCCceee-cCCCCCChh
Q psy9995 475 FVNGHLLYC-QAPPGVPQE 492 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~ 492 (595)
+.+++-. +|-.+.|+.
T Consensus 488 --~~~iliLDE~TSaLD~~ 504 (529)
T TIGR02868 488 --DAPILLLDEPTEHLDAG 504 (529)
T ss_pred --CCCEEEEeCCcccCCHH
Confidence 5666544 344445543
No 160
>PRK00007 elongation factor G; Reviewed
Probab=98.42 E-value=8.3e-07 Score=103.22 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=76.2
Q ss_pred cccCCCCCCCCcCCCHHHHHH----------------------HHHH---------HhhhhcCeeeEEEeCCCcccChhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQA----------------------MERD---------EFLQWRRELNLLQEEDGLVITPYE 156 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~----------------------~Er~---------~f~~wrg~~~~L~DT~Gi~~t~~e 156 (595)
.+.|-.+|+.||||+.|.|+. .|++ ..+.|.+..+.|+||||...
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~---- 87 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD---- 87 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH----
Confidence 455666777788888777752 2232 45679999999999999642
Q ss_pred hhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 157 KNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 157 rn~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
+...+.+.+..+|++|+|+||..........+..++. ..++|.|+++||+|+....
T Consensus 88 ----f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~--~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 88 ----FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQAD--KYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred ----HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHH--HcCCCEEEEEECCCCCCCC
Confidence 2334677889999999999999887766666666666 3578999999999998643
No 161
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.41 E-value=4.4e-08 Score=121.78 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=102.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE------------------------------------ecCCCCCceeeE-EEEc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS------------------------------------VSATPGKTKHFQ-TLFV 365 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs------------------------------------Vs~tPG~TKh~Q-ti~~ 365 (595)
-+++|||.+|+|||||++.|+|.+... -++.|+.+..-. +...
T Consensus 1195 ~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFK 1274 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 578999999999999999999977542 012222222211 1223
Q ss_pred CCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhhhhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHH
Q psy9995 366 DDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEE 444 (595)
Q Consensus 366 ~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e 444 (595)
..+-+++| |..... ++...+|..++.|.+-..+++.++.+| .||.+.....+.+.+.+...+++
T Consensus 1275 ~~G~I~id--G~di~~-------------~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1275 NSGKILLD--GVDICD-------------YNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred CCCeEEEC--CEEHHh-------------CCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 45566667 654333 567789999999998888999999999 68854322222222233345678
Q ss_pred HHHHhhhh-------cCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChh
Q psy9995 445 LCNAYGYN-------RGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQE 492 (595)
Q Consensus 445 ~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~ 492 (595)
|+..++.+ +|..++|||.++.+.||+||++ -+++-.- |--..|.+
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~---p~ILLLDEaTSaLD~~ 1392 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLRE---PKILLLDEATSSLDSN 1392 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcC---CCEEEEeCcccccCHH
Confidence 88877654 7888999999999999999984 5776554 43445543
No 162
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.41 E-value=6.1e-07 Score=83.62 Aligned_cols=126 Identities=13% Similarity=0.042 Sum_probs=80.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------H----hhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------E----FLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~----f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.+-..|+.||+++.+.|...+-. . ...+. ...+.+.||+|.. .-..+ ....+..+|
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~~---~~~~~~~~d 74 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP-----EYLEV---RNEFYKDTQ 74 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH-----HHHHH---HHHHhccCC
Confidence 445678999999999999865421 0 11222 3455688999952 11112 223568899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----C-----CCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----S-----PHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~-----~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
++|+|+|++++.++ ..+..++.++ . .+.|+++|.||+|+.++. .......+....+.+++.+||+++
T Consensus 75 ~~ilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 152 (168)
T cd04119 75 GVLLVYDVTDRQSF--EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTG 152 (168)
T ss_pred EEEEEEECCCHHHH--HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 99999999987553 2334444333 1 357899999999997321 122223333455678899999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 153 ~g 154 (168)
T cd04119 153 EG 154 (168)
T ss_pred CC
Confidence 76
No 163
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.41 E-value=1.4e-06 Score=90.10 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=55.3
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
..+|.+..+.|+||||.. ++....+..+..+|.+|+|+|+..+.......+.+++. ..+.|+++++||+|
T Consensus 65 ~~~~~~~~i~liDTPG~~--------df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~--~~~~P~iivvNK~D 134 (267)
T cd04169 65 QFEYRDCVINLLDTPGHE--------DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCR--LRGIPIITFINKLD 134 (267)
T ss_pred EEeeCCEEEEEEECCCch--------HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHH--hcCCCEEEEEECCc
Confidence 678999999999999953 23345677889999999999998765433333434433 34789999999999
Q ss_pred CCCH
Q psy9995 214 LLTR 217 (595)
Q Consensus 214 Ll~~ 217 (595)
+...
T Consensus 135 ~~~a 138 (267)
T cd04169 135 REGR 138 (267)
T ss_pred cCCC
Confidence 8654
No 164
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.40 E-value=2.1e-07 Score=96.64 Aligned_cols=61 Identities=34% Similarity=0.524 Sum_probs=51.1
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--E-EcCCceEEEeCCCCccCC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--L-FVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i-~~~~~~~liDtPGl~~p~ 381 (595)
.+.-+|++||+|+||||||+|.|++.+ ..|++.|.+|..... + +-+..++++|+|||+...
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCc
Confidence 456899999999999999999999876 789999999988543 2 337789999999998543
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.38 E-value=3.6e-06 Score=96.22 Aligned_cols=95 Identities=15% Similarity=0.049 Sum_probs=62.3
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR-- 217 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~-- 217 (595)
..+.|+||||... +.....+.+..+|.+|+|+|+.++...........+ ...+.|+|+|+||+|+...
T Consensus 70 ~~l~liDTPG~~d--------F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~--~~~~ipiIiViNKiDl~~~~~ 139 (595)
T TIGR01393 70 YVLNLIDTPGHVD--------FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLA--LENDLEIIPVINKIDLPSADP 139 (595)
T ss_pred EEEEEEECCCcHH--------HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHH--HHcCCCEEEEEECcCCCccCH
Confidence 5678999999753 233445678899999999999987654332221222 2356799999999998542
Q ss_pred H-HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 218 K-QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 218 ~-~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
. ....+.+.+.-...+++++||+++.+
T Consensus 140 ~~~~~el~~~lg~~~~~vi~vSAktG~G 167 (595)
T TIGR01393 140 ERVKKEIEEVIGLDASEAILASAKTGIG 167 (595)
T ss_pred HHHHHHHHHHhCCCcceEEEeeccCCCC
Confidence 1 22344444321112578999999876
No 166
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.38 E-value=7.6e-07 Score=85.16 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=78.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
-.+.+-..|+.||+++.+.+...+.. ....+.+..+.+.||+|.. .....| ...++.+|++|
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~---~~~~~~~d~vi 87 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQE-----SLRSSW---NTYYTNTDAVI 87 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCH-----HHHHHH---HHHhhcCCEEE
Confidence 34666778888888888887542211 1234556678899999952 111122 23578999999
Q ss_pred EEEeCCCCCCCCc--hHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 177 QIVDARNPLLFRC--EDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 177 ~VvDAR~Pl~~~~--~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
+|+|+.++..+.. ..+..++... ..+.|++||+||+|+..........+.+. ..++.++.+||+++.+
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 9999987643321 1233333211 13579999999999864212222223331 2244678899988765
No 167
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.38 E-value=2.5e-07 Score=92.08 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=41.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEec-CCCCCceeeEEEE---cCCceEEEeCCCCccCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVS-ATPGKTKHFQTLF---VDDELLLCDCPGLVMPSF 382 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs-~tPG~TKh~Qti~---~~~~~~liDtPGl~~p~f 382 (595)
++|.++|.+|+||||++|+|+|...+.++ ....+|+..+... -+..+.+|||||+..+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~ 64 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG 64 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc
Confidence 57999999999999999999999876665 3456777776543 267899999999975553
No 168
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.37 E-value=1.1e-06 Score=82.03 Aligned_cols=127 Identities=10% Similarity=0.085 Sum_probs=78.9
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-|-..|+.||+++.+.+....-. ....+.+. .+.+.||||... + ..+++ ..+..+|
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~---~~~~~---~~~~~~~ 75 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE--F---SAMRE---QYMRTGE 75 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcc--h---hHHHH---HHHhhCC
Confidence 3456678999999999987643211 11123343 356789999531 1 11222 3567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+++|+|+.++.++. .+..++..+ ..+.|+|||+||+|+..... ...-.++....+..++.+||+++.+
T Consensus 76 ~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 151 (164)
T cd04145 76 GFLLVFSVTDRGSFE--EVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLN 151 (164)
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCC
Confidence 999999998876542 233333222 24679999999999965321 1122233344577889999998766
No 169
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.37 E-value=3.3e-07 Score=99.73 Aligned_cols=57 Identities=42% Similarity=0.465 Sum_probs=45.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-------------------------CCceEEEeCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-------------------------DDELLLCDCP 375 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-------------------------~~~~~liDtP 375 (595)
++||+||.||||||||+|+|++.. +.+++.||+|.+... ..+ ...+.++|+|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 589999999999999999999875 688999999977543 111 1346799999
Q ss_pred CCccC
Q psy9995 376 GLVMP 380 (595)
Q Consensus 376 Gl~~p 380 (595)
|++..
T Consensus 81 Gl~~g 85 (396)
T PRK09602 81 GLVPG 85 (396)
T ss_pred CcCCC
Confidence 99754
No 170
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.37 E-value=1.5e-06 Score=79.56 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=79.3
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH-----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD-----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~-----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
.|-.+|+.|||++.+.|...+-. .-..+.+..+.+.||+|.. .+.+.....+..+|++++|
T Consensus 3 ~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 3 TLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP--------RFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCH--------hHHHHHHHHHhcCCEEEEE
Confidence 34568999999999999876321 1123445667899999952 1122233567899999999
Q ss_pred EeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 179 VDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 179 vDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
+|+.++..+. ....++..+ ..++|+++|+||+|+.+......+.+.+. ...+.++.+|++++.+
T Consensus 75 ~d~~~~~~~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (159)
T cd04159 75 VDAADRTALE--AAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTN 148 (159)
T ss_pred EECCCHHHHH--HHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCC
Confidence 9998764321 112222221 14679999999999976544433333331 1235678899988765
No 171
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.37 E-value=1.5e-06 Score=100.95 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=67.9
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
...+|.+..+.|+||||... +.......+..+|++|+|+|+.++.......+..++. ..+.|.|+|+||+
T Consensus 68 ~~~~~~~~~i~liDTPG~~~--------~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~--~~~~p~ivviNK~ 137 (689)
T TIGR00484 68 TTVFWKGHRINIIDTPGHVD--------FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQAN--RYEVPRIAFVNKM 137 (689)
T ss_pred EEEEECCeEEEEEECCCCcc--------hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHH--HcCCCEEEEEECC
Confidence 46679999999999999853 1223556788999999999999876655555555555 3468999999999
Q ss_pred CCCCHH---HHHHHHHHHhhCCC-eEEEEecccC
Q psy9995 213 DLLTRK---QRCYWTKYFNSVNV-AVAFFSATNI 242 (595)
Q Consensus 213 DLl~~~---~~~~w~~~~~~~gi-~vi~~SA~~~ 242 (595)
|+.... ....+.+.+..... .++++|+..+
T Consensus 138 D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 138 DKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 997533 22233333321111 3466777655
No 172
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.36 E-value=9.2e-06 Score=90.03 Aligned_cols=96 Identities=17% Similarity=0.091 Sum_probs=64.3
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCC-CCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNP-LLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~P-l~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
..+.|+||||. ..+.+.++..+..+|++++||||..+ ......+-...+.. ..-+++|+|+||+|+++.+
T Consensus 117 ~~i~~IDtPGH--------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 117 RHVSFVDCPGH--------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ceEeeeeCCCH--------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cCCCcEEEEEecccccCHH
Confidence 45689999993 35678888899999999999999875 22211111122221 2345789999999998754
Q ss_pred HHH----HHHHHHhh---CCCeEEEEecccCCC
Q psy9995 219 QRC----YWTKYFNS---VNVAVAFFSATNIYD 244 (595)
Q Consensus 219 ~~~----~w~~~~~~---~gi~vi~~SA~~~~~ 244 (595)
... .+.+++.. .+.+++++||+++.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~n 220 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYN 220 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCC
Confidence 432 23333322 356899999998765
No 173
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.35 E-value=9e-07 Score=82.29 Aligned_cols=128 Identities=12% Similarity=-0.063 Sum_probs=80.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.+-..|+.||+|+.+.+...+-. ....+.+..+.+.||+|.... .......+..+|.
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~ 74 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY--------AAIRDNYHRSGEG 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhh--------hHHHHHHhhcCCE
Confidence 345567999999999998754311 111223345778899995321 1122346788999
Q ss_pred EEEEEeCCCCCCCC--chHHHHHHHHh-CCCCcEEEEEeCCCCCCH--HHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFR--CEDLERYVKEV-SPHKRNMILLNKADLLTR--KQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~--~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~--~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|..+|.++. ...+..+.... ..+.|+++|+||+|+... ........+....+.+++.+||+++.+
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQN 149 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCC
Confidence 99999998876432 12222333211 246899999999999762 122223333444577899999999877
No 174
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.35 E-value=2.3e-06 Score=94.02 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=69.7
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHH---HHHHhCCCCcEEEEE
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLER---YVKEVSPHKRNMILL 209 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~---~lk~v~~~K~~ILVl 209 (595)
....|.+..+.|+||||.. .+++.+...+..+|++|+|+|+.++.+........ ++.. ...+++|+|+
T Consensus 78 ~~~~~~~~~i~iiDtpGh~--------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVvi 148 (426)
T TIGR00483 78 WKFETDKYEVTIVDCPGHR--------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAI 148 (426)
T ss_pred EEEccCCeEEEEEECCCHH--------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEE
Confidence 3456778889999999942 35666666788999999999999885432222211 2222 2235788999
Q ss_pred eCCCCCC--HHH----HHHHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 210 NKADLLT--RKQ----RCYWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 210 NK~DLl~--~~~----~~~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
||+|+.+ .+. ...+.++++..+ ++++++||+++.+.
T Consensus 149 NK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni 195 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNV 195 (426)
T ss_pred EChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccc
Confidence 9999974 322 234444555444 46899999998763
No 175
>PRK12739 elongation factor G; Reviewed
Probab=98.35 E-value=1.1e-06 Score=102.24 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=60.0
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
..++|.+..+.|+||||.+. +..++.+.+..+|++|+|+|+..+.......+..++. ..++|.|+++||+
T Consensus 66 ~~~~~~~~~i~liDTPG~~~--------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~--~~~~p~iv~iNK~ 135 (691)
T PRK12739 66 TTCFWKGHRINIIDTPGHVD--------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQAD--KYGVPRIVFVNKM 135 (691)
T ss_pred EEEEECCEEEEEEcCCCHHH--------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECC
Confidence 56779999999999999743 3345778899999999999999887655555666655 3578999999999
Q ss_pred CCCCH
Q psy9995 213 DLLTR 217 (595)
Q Consensus 213 DLl~~ 217 (595)
|+...
T Consensus 136 D~~~~ 140 (691)
T PRK12739 136 DRIGA 140 (691)
T ss_pred CCCCC
Confidence 99864
No 176
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.35 E-value=6.3e-07 Score=81.32 Aligned_cols=55 Identities=38% Similarity=0.546 Sum_probs=45.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~---~~~~liDtPGl~ 378 (595)
++|+++|.+|+|||||+|+|++.. ...+..|++|+++.. +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 689999999999999999999887 778888999998765 3343 357889999953
No 177
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.34 E-value=5.5e-06 Score=94.74 Aligned_cols=96 Identities=16% Similarity=0.074 Sum_probs=62.0
Q ss_pred CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 139 RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 139 g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
+..+.|+||||... +.....+.+..+|.+|+|+|+.++...... ..+......+.|+|+|+||+|+....
T Consensus 73 ~~~lnLiDTPGh~d--------F~~~v~~sl~~aD~aILVVDas~gv~~qt~--~~~~~~~~~~lpiIvViNKiDl~~a~ 142 (600)
T PRK05433 73 TYILNLIDTPGHVD--------FSYEVSRSLAACEGALLVVDASQGVEAQTL--ANVYLALENDLEIIPVLNKIDLPAAD 142 (600)
T ss_pred cEEEEEEECCCcHH--------HHHHHHHHHHHCCEEEEEEECCCCCCHHHH--HHHHHHHHCCCCEEEEEECCCCCccc
Confidence 56788999999753 223344568899999999999987654322 22222123578999999999986432
Q ss_pred H---HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 219 Q---RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 219 ~---~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
. ...+.+.+.-...+++++||+++.+
T Consensus 143 ~~~v~~ei~~~lg~~~~~vi~iSAktG~G 171 (600)
T PRK05433 143 PERVKQEIEDVIGIDASDAVLVSAKTGIG 171 (600)
T ss_pred HHHHHHHHHHHhCCCcceEEEEecCCCCC
Confidence 1 2233333211112488999998876
No 178
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.34 E-value=1.6e-06 Score=79.33 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=80.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhh--cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE-------------FLQW--RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~-------------f~~w--rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.+-..|+.|||++.+.+....-.. ...+ ....+.+.|++|.. . +.......++.+|
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~---~~~~~~~~~~~~d 74 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE-----R---FRSITPSYYRGAH 74 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH-----H---HHHHHHHHhcCCC
Confidence 4456789999999999997654221 1112 22445678999952 1 1122334678899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---C-CCCcEEEEEeCCCCCCH--HHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---S-PHKRNMILLNKADLLTR--KQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~-~~K~~ILVlNK~DLl~~--~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++... ..+..++..+ . ...|+++|+||+|+..+ ...+...++....+..++.+|++++.+
T Consensus 75 ~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 149 (159)
T cd00154 75 GAILVYDITNRESF--ENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGEN 149 (159)
T ss_pred EEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 99999999876432 2333333322 1 35899999999999622 122333444445578899999988765
No 179
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.34 E-value=1.4e-06 Score=81.77 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=82.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+.|-.+|+.|||++.+.+...+-. .+ ..+.+. .+.+.||+|... -..+ ....++.+
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----~~~~---~~~~~~~~ 76 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER-----YRAI---TSAYYRGA 76 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH-----HHHH---HHHHHCCC
Confidence 4567789999999999999865422 01 122332 456889999421 1111 22356789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh---C-CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV---S-PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v---~-~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|.+|+|+|+.++.++ ..+.+++..+ . .+.|+++|.||+|+....+ .+....+....+..++.+||+++.+
T Consensus 77 ~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 152 (165)
T cd01868 77 VGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTN 152 (165)
T ss_pred CEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 999999999887654 3344555443 2 2478999999999965321 1222333444577899999998866
No 180
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.34 E-value=1.1e-06 Score=81.92 Aligned_cols=126 Identities=17% Similarity=0.088 Sum_probs=80.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-+-.+|+.|||++.+.|....-.. .+.+.+ ..+.+.||+|.. +-. ......+..+|
T Consensus 3 i~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-----~~~---~~~~~~~~~~~ 74 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE-----RFR---SLIPSYIRDSS 74 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH-----HHH---HHHHHHhccCC
Confidence 4456789999999999998654321 122333 246789999931 111 12334578999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH-HH-HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK-QR-CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~-~~-~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.+|.++. .+..++..+ ..+.|+++|+||+|+.... .. ..........+..++.+||+++.+
T Consensus 75 ~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (161)
T cd01861 75 VAVVVYDITNRQSFD--NTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHN 149 (161)
T ss_pred EEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCC
Confidence 999999998876542 334444332 2248999999999995432 11 222233334467889999998876
No 181
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.33 E-value=1.3e-06 Score=82.13 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=78.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.|-..|+.||||+++.+....-. ....+.+.. +.+.|++|.. . +.......+..+|
T Consensus 3 i~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~---~~~~~~~~~~~~d 74 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE-----R---FQSLGVAFYRGAD 74 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH-----H---HHhHHHHHhcCCC
Confidence 446678999999999998754211 112344443 3478999842 1 1122234678899
Q ss_pred eEEEEEeCCCCCCCCch-HH-HHHHHHhC----CCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCC-CeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCE-DL-ERYVKEVS----PHKRNMILLNKADLLTRK--QRCYWTKYFNSVN-VAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~-~L-e~~lk~v~----~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~g-i~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++... .+ ..++.... .+.|+++|+||+|+..+. .......+.+..+ ..++.+|++++.+
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 75 CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAIN 154 (172)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCC
Confidence 99999999887654221 11 12222211 268999999999998321 1222223334445 6889999999876
No 182
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.33 E-value=2.2e-06 Score=86.22 Aligned_cols=122 Identities=12% Similarity=0.102 Sum_probs=80.5
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH-h---------hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE-F---------LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~-f---------~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
+.|-.+|+.||+++.+.|....... . ....+..+.++||||.. ..+...++.+|+|++|
T Consensus 42 i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~-----------~~~l~~ak~aDvVllv 110 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDI-----------NAMIDIAKVADLVLLL 110 (225)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccCccccccccEEEEecCCceEEEEeCCchH-----------HHHHHHHHhcCEEEEE
Confidence 5566789999999999888763221 1 11245566788999732 3445567899999999
Q ss_pred EeCCCCCCCCchHHHHHHHHhCCCCcE-EEEEeCCCCCCHH-HHHHHHHH----Hh-h--CCCeEEEEecccCC
Q psy9995 179 VDARNPLLFRCEDLERYVKEVSPHKRN-MILLNKADLLTRK-QRCYWTKY----FN-S--VNVAVAFFSATNIY 243 (595)
Q Consensus 179 vDAR~Pl~~~~~~Le~~lk~v~~~K~~-ILVlNK~DLl~~~-~~~~w~~~----~~-~--~gi~vi~~SA~~~~ 243 (595)
+|+..+....+..+..++. ..+.|. |+|+||+|++... ....+.+. |. + .+.+++++||++..
T Consensus 111 iDa~~~~~~~~~~i~~~l~--~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 111 IDASFGFEMETFEFLNILQ--VHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EecCcCCCHHHHHHHHHHH--HcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9998877655556666665 245675 4599999998432 23333222 21 1 14589999998763
No 183
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.33 E-value=2.5e-06 Score=83.66 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=96.0
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHH-H------------HhhhhcCeeeEEEeCCCcccC--hhhhhHHHHHH-HHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMER-D------------EFLQWRRELNLLQEEDGLVIT--PYEKNLDFWRQ-LWRV 168 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er-~------------~f~~wrg~~~~L~DT~Gi~~t--~~ern~e~~rq-l~~v 168 (595)
....+.+-.|-|+||||+.|.|.+... + -|.+|... +.|+|-||+=.. +-+. .+-|.+ +.+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~-~e~w~~~i~~Y 100 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEV-KEKWKKLIEEY 100 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHH-HHHHHHHHHHH
Confidence 456788889999999999999998663 1 46667665 679999987542 2222 333443 4444
Q ss_pred Hh---hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHH----HHHHHhhC-CCe--EEEEe
Q psy9995 169 IE---RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY----WTKYFNSV-NVA--VAFFS 238 (595)
Q Consensus 169 ie---~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~----w~~~~~~~-gi~--vi~~S 238 (595)
++ +-..+++|+|+|.|+...+.++.+++. ..+.|+++|+||+|-++...... ..+.+... ... ++++|
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~--~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~s 178 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLL--ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFS 178 (200)
T ss_pred HhhchhheEEEEEEECCCCCcHHHHHHHHHHH--HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEe
Confidence 44 357889999999999877778888887 46889999999999998755432 22232211 112 78899
Q ss_pred cccCCC
Q psy9995 239 ATNIYD 244 (595)
Q Consensus 239 A~~~~~ 244 (595)
+.++.|
T Consensus 179 s~~k~G 184 (200)
T COG0218 179 SLKKKG 184 (200)
T ss_pred cccccC
Confidence 888776
No 184
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.33 E-value=1.2e-05 Score=87.86 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=63.1
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPL-LFRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl-~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
..+.|+||||. .++.+.+...+..+|++++|+|++.+. .....+....+.. ...+++|+|+||+|+++.+
T Consensus 80 ~~i~liDtPGh--------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 80 RRVSFVDAPGH--------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred cEEEEEECCCH--------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccccCCHH
Confidence 56789999994 234566667778899999999999765 3222222223332 2346789999999998754
Q ss_pred HH----HHHHHHHhhC---CCeEEEEecccCCC
Q psy9995 219 QR----CYWTKYFNSV---NVAVAFFSATNIYD 244 (595)
Q Consensus 219 ~~----~~w~~~~~~~---gi~vi~~SA~~~~~ 244 (595)
.. ....+++... +.+++++||+++.+
T Consensus 151 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 183 (406)
T TIGR03680 151 KALENYEEIKEFVKGTVAENAPIIPVSALHNAN 183 (406)
T ss_pred HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCC
Confidence 33 2222233222 45788999988765
No 185
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.33 E-value=1.2e-06 Score=83.69 Aligned_cols=127 Identities=13% Similarity=0.053 Sum_probs=76.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHHH----------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERDE----------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~~----------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+.|-..|++||+++.+.|...+... ...+.+..+.+.||+|.. +-..+|+ ..+..+|++|+
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~---~~~~~a~~ii~ 82 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD-----KIRPLWR---HYYTGTQGLIF 82 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCH-----HHHHHHH---HHhccCCEEEE
Confidence 45566677777777777775432110 112345667899999952 1112232 35689999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCC---HHHHHHHHHH--HhhCCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLT---RKQRCYWTKY--FNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~---~~~~~~w~~~--~~~~gi~vi~~SA~~~~~ 244 (595)
|+|+.++.++. .+..++.++ ..+.|++||.||+|+.. .++...+... +......++.+||+++.+
T Consensus 83 v~D~t~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g 157 (168)
T cd04149 83 VVDSADRDRID--EARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 157 (168)
T ss_pred EEeCCchhhHH--HHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC
Confidence 99999875432 223333222 13579999999999853 3444333321 111223567899999887
No 186
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.32 E-value=1.1e-06 Score=82.75 Aligned_cols=123 Identities=12% Similarity=0.158 Sum_probs=78.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|+.|||++.+.+....-. .+ ....+ ..+.+.||+|.. +- .......+..+|
T Consensus 5 i~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~---~~~~~~~~~~~~ 76 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE-----RF---RTITSSYYRGAH 76 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH-----hH---HHHHHHHhCcCC
Confidence 445678999999999998754321 01 11222 245778999932 11 122234567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---C-CCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---S-PHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~-~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+|+|+.++.++ ..+..++..+ . .+.|+++|.||+|+... ++...|. ...+.+++.+||+++.+
T Consensus 77 ~ii~v~d~~~~~s~--~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~ 151 (166)
T cd01869 77 GIIIVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFA---DELGIPFLETSAKNATN 151 (166)
T ss_pred EEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHH---HHcCCeEEEEECCCCcC
Confidence 99999999887543 2334444433 1 45799999999998643 2233333 34477899999998866
No 187
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.32 E-value=5.3e-07 Score=105.51 Aligned_cols=55 Identities=36% Similarity=0.517 Sum_probs=46.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
++|++||.||||||||+|+|++.+ ..|++.||+|.+.....+ +..+.++||||+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~y 61 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTY 61 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCcc
Confidence 689999999999999999999876 589999999988654322 4578999999986
No 188
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.32 E-value=2.4e-06 Score=86.66 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=60.5
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
...+|.+..+.++||||... +.......+..+|.+++|+|+.+........+.+++. ..+.|.++|+||+
T Consensus 57 ~~~~~~~~~i~liDTPG~~~--------f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~--~~~~P~iivvNK~ 126 (237)
T cd04168 57 ASFQWEDTKVNLIDTPGHMD--------FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLR--KLNIPTIIFVNKI 126 (237)
T ss_pred EEEEECCEEEEEEeCCCccc--------hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECc
Confidence 34568999999999999742 3344566788999999999999876544444445554 3478999999999
Q ss_pred CCCCH---HHHHHHHHHH
Q psy9995 213 DLLTR---KQRCYWTKYF 227 (595)
Q Consensus 213 DLl~~---~~~~~w~~~~ 227 (595)
|+... .....+.+.|
T Consensus 127 D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 127 DRAGADLEKVYQEIKEKL 144 (237)
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 99742 3334444444
No 189
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.31 E-value=1.2e-07 Score=107.80 Aligned_cols=137 Identities=21% Similarity=0.209 Sum_probs=94.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ...+-+++| |..... ++.+.+|.
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~------------------p~~G~I~i~--g~~i~~-------------~~~~~lr~ 423 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL------------------PYQGSLKIN--GIELRE-------------LDPESWRK 423 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC------------------CCCcEEEEC--CEeccc-------------CCHHHHHh
Confidence 468999999999999999999854 123446667 654333 56778888
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
++..|.+-...++.++.+| .|+.+...+.+.....+....++++..++.+ +|...+|||.++...||++|++
T Consensus 424 ~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred heEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 8888888888899999988 5764322222222222333466777766443 6778999999999999999984
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
-+++-. +|--..|...-.
T Consensus 504 ---~~IliLDE~TSaLD~~te~ 522 (588)
T PRK11174 504 ---CQLLLLDEPTASLDAHSEQ 522 (588)
T ss_pred ---CCEEEEeCCccCCCHHHHH
Confidence 466544 444456654433
No 190
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.31 E-value=1.4e-06 Score=81.26 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=79.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH---------h----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE---------F----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~---------f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|+.|||++.+.|....... + ..+.+ ..+.|.||+|... +.......++.+|
T Consensus 3 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~d 74 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQER--------FRTLTSSYYRGAQ 74 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchh--------hhhhhHHHhCCCC
Confidence 3455789999999999998653210 0 12222 3467889999421 1112234567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHH-HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRK-QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~-~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+|+|+.++.++. .+..++..+ ..+.|+++|.||+|+.... .......+....+..++.+||+++.+
T Consensus 75 ~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (161)
T cd01863 75 GVILVYDVTRRDTFT--NLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDG 149 (161)
T ss_pred EEEEEEECCCHHHHH--hHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 999999998776542 333343322 2467899999999997322 12222333344577899999998876
No 191
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.31 E-value=1.1e-05 Score=88.35 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=63.8
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPL-LFRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl-~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
..+.|+||||. ..+.+.....+..+|++++|+|++.|. .........++.. ...+++++|+||+|+++.+
T Consensus 85 ~~i~liDtPG~--------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 85 RRVSFVDAPGH--------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred cEEEEEECCCH--------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEEeeccccch
Confidence 46789999993 245566667778899999999999876 3332333333332 2235789999999998754
Q ss_pred HH----HHHHHHHhh---CCCeEEEEecccCCC
Q psy9995 219 QR----CYWTKYFNS---VNVAVAFFSATNIYD 244 (595)
Q Consensus 219 ~~----~~w~~~~~~---~gi~vi~~SA~~~~~ 244 (595)
.. ..+..++.. .+++++++||+++.+
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 188 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVN 188 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcC
Confidence 32 223333322 246789999998765
No 192
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.31 E-value=3.3e-07 Score=86.41 Aligned_cols=51 Identities=45% Similarity=0.606 Sum_probs=41.8
Q ss_pred EeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc--CCceEEEeCCCCc
Q psy9995 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV--DDELLLCDCPGLV 378 (595)
Q Consensus 327 lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~--~~~~~liDtPGl~ 378 (595)
++|.+|||||||+|+|++... .++..|++|.+.+. +.. +..+.++||||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccc
Confidence 589999999999999998764 78889999987543 333 4678999999985
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.30 E-value=6.6e-07 Score=90.51 Aligned_cols=55 Identities=35% Similarity=0.496 Sum_probs=45.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVM 379 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~ 379 (595)
+|+++|+||||||||+|+|++.. ..++..|++|..... +.. +..+.++||||+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~ 59 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIE 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCccc
Confidence 58999999999999999999875 567889999987543 222 55788999999863
No 194
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.30 E-value=2.1e-06 Score=80.20 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=82.3
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.|-..|+.||+++.+.|...+-.. .....+ ..+.+.||+|.. .+.......+..+|
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~~~~~~~ 74 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE--------RFRSVTRSYYRGAA 74 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH--------HHHHhHHHHhcCCC
Confidence 4456789999999999998654210 012223 345688999942 11122234577899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+|+|+.++.++. .+..++..+ ..+.|++||.||+|+..... ......+....+..++.+||+++.+
T Consensus 75 ~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (161)
T cd04113 75 GALLVYDITNRTSFE--ALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGEN 149 (161)
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 999999998876543 234444332 35789999999999975321 2233344455678899999998876
No 195
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.30 E-value=2e-06 Score=81.34 Aligned_cols=127 Identities=10% Similarity=0.065 Sum_probs=81.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH-H------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER-D------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er-~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
++-|-..|+.|||++.+.+....= . ....+.+. .+.+.||+|... + .......++.+
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~--~------~~~~~~~~~~a 76 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER--F------RTITTAYYRGA 76 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHH--H------HHHHHHHhCCC
Confidence 455667899999999999986531 1 11123343 346779998321 1 11223467899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++. .+..++..+ ..+.|+++|.||+|+....+ .+....+....+.+++.+||+++.+
T Consensus 77 d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 152 (167)
T cd01867 77 MGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANIN 152 (167)
T ss_pred CEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999998876542 344444433 23578999999999974321 1222233344567889999998765
No 196
>KOG0056|consensus
Probab=98.28 E-value=1.3e-07 Score=102.26 Aligned_cols=121 Identities=22% Similarity=0.236 Sum_probs=81.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhh
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMR 401 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lr 401 (595)
.-+|++||.+|.||||++..|.+.. .+..+.+.+| |..... +...++|
T Consensus 564 GktvAlVG~SGaGKSTimRlLfRff-----------------dv~sGsI~iD--gqdIrn-------------vt~~SLR 611 (790)
T KOG0056|consen 564 GKTVALVGPSGAGKSTIMRLLFRFF-----------------DVNSGSITID--GQDIRN-------------VTQSSLR 611 (790)
T ss_pred CcEEEEECCCCCchhHHHHHHHHHh-----------------hccCceEEEc--CchHHH-------------HHHHHHH
Confidence 3579999999999999999999865 5667888899 765444 2345677
Q ss_pred hhhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 402 DHVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 402 d~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
.+++.|.+..-+++.+++.+ .|+-+-...++...+.+.+..+|-+..++.+ ||+.++||+.++.+.||.|||
T Consensus 612 s~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred HhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 77777766666677666544 3544322222211122223334433333332 999999999999999999998
Q ss_pred H
Q psy9995 474 D 474 (595)
Q Consensus 474 D 474 (595)
+
T Consensus 692 ~ 692 (790)
T KOG0056|consen 692 A 692 (790)
T ss_pred C
Confidence 6
No 197
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.28 E-value=3.2e-06 Score=96.54 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
....|.+..+.|+||||.. ++...+.+.+..+|.+|+|+||..........+...+. ..+.|.|+|+||+
T Consensus 57 ~~v~~~~~kinlIDTPGh~--------DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~--~~~ip~IVviNKi 126 (594)
T TIGR01394 57 TAIRYNGTKINIVDTPGHA--------DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKAL--ELGLKPIVVINKI 126 (594)
T ss_pred EEEEECCEEEEEEECCCHH--------HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHH--HCCCCEEEEEECC
Confidence 3568999999999999953 34456677889999999999998754433333333333 3568899999999
Q ss_pred CCCCH---HHHHHHHHHHhh-------CCCeEEEEecccCCC
Q psy9995 213 DLLTR---KQRCYWTKYFNS-------VNVAVAFFSATNIYD 244 (595)
Q Consensus 213 DLl~~---~~~~~w~~~~~~-------~gi~vi~~SA~~~~~ 244 (595)
|+... +......+.|.. ..+++++.||+++.+
T Consensus 127 D~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~ 168 (594)
T TIGR01394 127 DRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWA 168 (594)
T ss_pred CCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcc
Confidence 98542 223444455532 245789999998864
No 198
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.27 E-value=2.3e-06 Score=79.20 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=79.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------Hh---hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------EF---LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~f---~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|++||+++.+.+...+-. .+ ..+.+ ..+.+.||+|.. +-..++. ..+..+|.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----~~~~l~~---~~~~~~~~ 75 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE-----EYSAMRD---QYMRTGEG 75 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCc-----chHHHHH---HHHhcCCE
Confidence 456688999999999999864421 00 11233 235678999942 1112222 36678999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHH-HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRK-QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~-~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|..++.++. .+..++..+ ..+.|++||.||+|+.... ......++....+.+++.+||+++.+
T Consensus 76 ~i~v~~~~~~~s~~--~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (162)
T cd04138 76 FLCVFAINSRKSFE--DIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQG 149 (162)
T ss_pred EEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCC
Confidence 99999998765432 233232222 2467999999999997532 11222333344577899999999876
No 199
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.27 E-value=2.4e-06 Score=79.64 Aligned_cols=127 Identities=20% Similarity=0.120 Sum_probs=74.7
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHHH----------hhhhc-CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERDE----------FLQWR-RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~~----------f~~wr-g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
.|-..|+.||+++.+.+...+-.. ...+. ...+.+.||+|.. .....| ...+..+|++|+|
T Consensus 3 ~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~---~~~~~~~~~iv~v 74 (160)
T cd04156 3 LLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQE-----KMRTVW---KCYLENTDGLVYV 74 (160)
T ss_pred EEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCH-----hHHHHH---HHHhccCCEEEEE
Confidence 345678889999988887553210 01121 3456788999852 111122 2357889999999
Q ss_pred EeCCCCCCCCc--hHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHh------hCCCeEEEEecccCCC
Q psy9995 179 VDARNPLLFRC--EDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFN------SVNVAVAFFSATNIYD 244 (595)
Q Consensus 179 vDAR~Pl~~~~--~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~------~~gi~vi~~SA~~~~~ 244 (595)
+|++++.++.. ..+...++.. ..+.|+++|+||+|+............+. +.+.+++.+||+++.|
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 99998753221 1122222210 14689999999999854322222222221 1234677899988766
No 200
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.27 E-value=9.6e-07 Score=82.11 Aligned_cols=56 Identities=29% Similarity=0.353 Sum_probs=40.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcce--eEecCCCCCceeeE--EEEc--CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKK--VSVSATPGKTKHFQ--TLFV--DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~k--vsVs~tPG~TKh~Q--ti~~--~~~~~liDtPGl~ 378 (595)
+.|+++|.||||||||+|+|++... +.....||+|.... .+.+ +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 3689999999999999999997532 22223467776643 2333 3578999999973
No 201
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.26 E-value=2.9e-06 Score=78.54 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=79.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHH-HHHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLW-RVIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~-~vie~s 172 (595)
+.|-..|+.|||++.+.|...+-.. ...+.+ ..+.+.||+|... +..++ ..+..+
T Consensus 3 i~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~~ 73 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER---------YHALGPIYYRDA 73 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHH---------HHHhhHHHhccC
Confidence 4456789999999999988654220 111222 2466889998321 11222 246789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|.+++|+|+.++.++ ..+..++.++ ..+.|+|+|+||+|+....+ .....++....+..++++|++++.+
T Consensus 74 ~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g 149 (162)
T cd04123 74 DGAILVYDITDADSF--QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKG 149 (162)
T ss_pred CEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999877543 2233333332 23579999999999975322 2334445555677889999998866
No 202
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.25 E-value=1.5e-06 Score=84.07 Aligned_cols=130 Identities=18% Similarity=0.106 Sum_probs=79.8
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
..+.|-..|+.|||++.+.+....-. ....+.+..+.+.||+|.. +....|+ ..++.+|.+|
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~---~~~~~ad~ii 89 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQ-----QARRLWK---DYFPEVNGIV 89 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCH-----HHHHHHH---HHhCCCCEEE
Confidence 45667778888888888887753211 1234566778899999953 1122333 3578999999
Q ss_pred EEEeCCCCCCCCc--hHHHHHHHHh-CCCCcEEEEEeCCCCC---CHHHHHHHHHHHhh---------CCCeEEEEeccc
Q psy9995 177 QIVDARNPLLFRC--EDLERYVKEV-SPHKRNMILLNKADLL---TRKQRCYWTKYFNS---------VNVAVAFFSATN 241 (595)
Q Consensus 177 ~VvDAR~Pl~~~~--~~Le~~lk~v-~~~K~~ILVlNK~DLl---~~~~~~~w~~~~~~---------~gi~vi~~SA~~ 241 (595)
+|+|+.+|..+.. ..+.+.+... ..+.|++||+||+|+. +.++.......... .-..++.+||++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 9999988743321 1233332210 1468999999999985 34443333221110 122578899998
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.|
T Consensus 170 ~~g 172 (184)
T smart00178 170 RMG 172 (184)
T ss_pred CCC
Confidence 876
No 203
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.25 E-value=1.8e-06 Score=83.23 Aligned_cols=131 Identities=19% Similarity=0.121 Sum_probs=79.4
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHH----------HHhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMER----------DEFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er----------~~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
...+.|-..++.|||++.+.+...+- .....|.+..+.+.||+|... ....|+ ..+..+|.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~-----~~~~~~---~~~~~ad~i 90 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQ-----ARRLWK---DYFPEVDGI 90 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHH-----HHHHHH---HHhccCCEE
Confidence 34566777788888888888765321 123356677788999999421 112232 357889999
Q ss_pred EEEEeCCCCCCCC--chHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHhh----------------CCCeEEE
Q psy9995 176 VQIVDARNPLLFR--CEDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFNS----------------VNVAVAF 236 (595)
Q Consensus 176 l~VvDAR~Pl~~~--~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~----------------~gi~vi~ 236 (595)
++|+|+.++..+. ...+...+... ..+.|+++|+||+|+...........++.. ....++.
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 9999998764331 11222222211 145899999999999643222233333321 1135778
Q ss_pred EecccCCC
Q psy9995 237 FSATNIYD 244 (595)
Q Consensus 237 ~SA~~~~~ 244 (595)
+||+++.+
T Consensus 171 ~Sa~~~~g 178 (190)
T cd00879 171 CSVVKRQG 178 (190)
T ss_pred eEecCCCC
Confidence 99998876
No 204
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.25 E-value=1.8e-07 Score=108.19 Aligned_cols=121 Identities=21% Similarity=0.203 Sum_probs=90.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|++||.+|+|||||.+.|+|-+ ....+-+++| |+.... ++..++|.
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly-----------------~p~~G~I~~d--g~dl~~-------------i~~~~lR~ 547 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLY-----------------KPQQGRILLD--GVDLND-------------IDLASLRR 547 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCceEEEC--CEeHHh-------------cCHHHHHh
Confidence 469999999999999999999976 4456778899 876554 56788999
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.|.+-...+.+++.++ ..+.+.....+...+.....++||+..++.+ +|...+|||.++...||.++.+
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 9999988888899998887 3443322211111122233466777766554 7888999999999999999875
Q ss_pred H
Q psy9995 475 F 475 (595)
Q Consensus 475 ~ 475 (595)
-
T Consensus 628 P 628 (709)
T COG2274 628 P 628 (709)
T ss_pred C
Confidence 3
No 205
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.24 E-value=4.1e-06 Score=78.39 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=78.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHH----HHH-------h----hh---hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAME----RDE-------F----LQ---WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~E----r~~-------f----~~---wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
+.|-..|+.||+++.+.|.... ... + .. -....+.+.||+|.. +...++ ...++
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~~~---~~~~~ 74 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----LYSDMV---SNYWE 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----HHHHHH---HHHhC
Confidence 3455678999999999887431 110 0 11 122455688999841 112222 34678
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|++++|+|+.++.++ ..+..++..+ ..+.|+++|.||+|+.+..+. ..+..+....+..++.+||+++.+
T Consensus 75 ~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (164)
T cd04101 75 SPSVFILVYDVSNKASF--ENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVG 151 (164)
T ss_pred CCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999877554 2344554433 245899999999999754321 112223333467888999998876
No 206
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.24 E-value=3.8e-06 Score=79.00 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=77.3
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH------H-------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER------D-------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er------~-------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|+.||+++.+.+....- . ....|.+. .+.+.||+|.. + +.......+..+|
T Consensus 6 v~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~---~~~~~~~~~~~~d 77 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE-----R---FRTITQSYYRSAN 77 (165)
T ss_pred EEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH-----H---HHHHHHHHhccCC
Confidence 44557889999999988864220 0 12334553 45688999931 1 1122334567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
++++|+|+.+|.++. .+..++..+ ..+.|+|+|.||+|+....+ ........+..+. .++.+||+++.+
T Consensus 78 ~~llv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (165)
T cd01864 78 GAIIAYDITRRSSFE--SVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred EEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC
Confidence 999999999886542 233443333 23568999999999964321 1111222233343 678999998766
No 207
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.22 E-value=2.8e-06 Score=80.97 Aligned_cols=127 Identities=15% Similarity=0.074 Sum_probs=79.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhc------------CeeeEEEeCCCcccChhhhhHHHH
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWR------------RELNLLQEEDGLVITPYEKNLDFW 162 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wr------------g~~~~L~DT~Gi~~t~~ern~e~~ 162 (595)
.+-|-..|+.||+++.+.+....-. .+ ..+. ...+.|.||+|.. .+.
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~ 77 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------RFR 77 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH--------HHH
Confidence 3456678999999999988643210 01 1111 1346688999932 112
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEE
Q psy9995 163 RQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVA 235 (595)
Q Consensus 163 rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi 235 (595)
......+..+|++|+|+|+.++.++.. +..++..+ ..+.|++||.||+|+.+... .....++....+.+++
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLTNEQSFLN--VRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 223346789999999999988765432 34444433 13568999999999964311 1122233334477889
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 156 e~Sak~~~~ 164 (180)
T cd04127 156 ETSAATGTN 164 (180)
T ss_pred EEeCCCCCC
Confidence 999999876
No 208
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.22 E-value=3.1e-06 Score=78.94 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=80.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.|-.+|+.|||++.+.|...+-.. ...+.+ ..+.+.||+|.. +....+ ...+..+|
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~-----~~~~~~---~~~~~~~~ 75 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE-----RYRSLA---PMYYRGAA 75 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH-----HHHHHH---HHHhccCC
Confidence 4566789999999999998764221 112333 345677999831 111122 23567899
Q ss_pred eEEEEEeCCCCCCCCc-hHHHHHHHHh-CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRC-EDLERYVKEV-SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~-~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++.. ..+...+... ....|+++|+||+|+.+.. .......+....+..++.+||+++.+
T Consensus 76 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd01860 76 AAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGEN 150 (163)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 9999999987754322 1111222221 2456799999999987321 22333444555578899999998766
No 209
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.22 E-value=2.8e-06 Score=80.14 Aligned_cols=126 Identities=12% Similarity=0.038 Sum_probs=80.1
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH---------h----hhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE---------F----LQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~---------f----~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|+.|||++.+.|...+-.. + ..-. ...+.+.||+|... -..+| ...+..+|
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----~~~~~---~~~~~~~~ 75 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----YRTIT---TAYYRGAM 75 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH-----HHHHH---HHHccCCc
Confidence 4566789999999999988654210 1 0011 23467889999431 11122 34578999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---C-CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---S-PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~-~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+++|+|..++.++ ..+..++..+ . ...|+++|.||+||.+... ...-.++....+.+++.+||+++.+
T Consensus 76 ~~l~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (165)
T cd01865 76 GFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENIN 150 (165)
T ss_pred EEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999876543 2344454443 2 3578999999999965421 1122223334577899999998876
No 210
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.22 E-value=2.3e-06 Score=79.70 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=78.4
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIV 179 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~Vv 179 (595)
.|-..|+.|||++.+.+...+-. .-..+.+..+.+.||+|... ....|+ ..+..+|++++|+
T Consensus 3 ~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~~~~---~~~~~~~~~i~v~ 74 (158)
T cd00878 3 LILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK-----IRPLWK---HYYENTNGIIFVV 74 (158)
T ss_pred EEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChh-----hHHHHH---HHhccCCEEEEEE
Confidence 44567888999998888766421 11233456788999999531 112232 3668899999999
Q ss_pred eCCCCCCCCc--hHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 180 DARNPLLFRC--EDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 180 DAR~Pl~~~~--~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
|+.+|..+.. ..+...+... ..+.|+++|+||+|+............+. ....+++.+||+++.+
T Consensus 75 D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 75 DSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9998743321 1122222211 24689999999999976432222222222 1234688899998766
No 211
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.22 E-value=2.8e-06 Score=80.29 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=75.4
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERDE-------------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~~-------------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
.|-..+++||+++.+.|....-.. ........+.+.||+|.... ...+...+..+|+++
T Consensus 4 ~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~ad~~i 75 (166)
T cd01893 4 VLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQD--------RANLAAEIRKANVIC 75 (166)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhh--------hHHHhhhcccCCEEE
Confidence 344667888888888876533210 00112345668899995321 112233568899999
Q ss_pred EEEeCCCCCCCCc--hHHHHHHHHhCCCCcEEEEEeCCCCCCHHHH---HH---H-HHHHhhCCCeEEEEecccCCC
Q psy9995 177 QIVDARNPLLFRC--EDLERYVKEVSPHKRNMILLNKADLLTRKQR---CY---W-TKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 177 ~VvDAR~Pl~~~~--~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~---~~---w-~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+|+.+|.++.. ..+...++....+.|+++|.||+|+.+.... .. + .+.+.. -..++.+||+++.+
T Consensus 76 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 151 (166)
T cd01893 76 LVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-IETCVECSAKTLIN 151 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-ccEEEEeccccccC
Confidence 9999998876543 1122333333456899999999999764321 11 1 122221 13688899998766
No 212
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.22 E-value=2.5e-06 Score=79.59 Aligned_cols=126 Identities=12% Similarity=0.110 Sum_probs=79.3
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhc----CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWR----RELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wr----g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
+-|-..|+.||+++.+.+....-. .+ ..+. ...+.+.||+|.. + +.......+..
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~---~~~~~~~~~~~ 74 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----E---FDAITKAYYRG 74 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----H---HHHhHHHHhcC
Confidence 345567889999999988753211 01 0111 2346678999932 1 11112346789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|.+++|+|+.++.++ ..+..++..+ ..+.|+|+|+||+|+..... ......+.+..+.+++.+||+++.+
T Consensus 75 ~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (162)
T cd04106 75 AQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN 150 (162)
T ss_pred CCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 9999999999887654 3344444433 34689999999999975322 1222333445578899999988765
No 213
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.21 E-value=2.9e-07 Score=106.87 Aligned_cols=137 Identities=21% Similarity=0.222 Sum_probs=94.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.+|.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~-----------------~p~~G~I~id--g~~i~~-------------~~~~~lr~ 527 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFE-----------------TPESGSVFYD--GQDLAG-------------LDVQAVRR 527 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------------CCCCCEEEEC--CEEcCc-------------CCHHHHHh
Confidence 478999999999999999999966 4456778888 765444 56678888
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.+.+-...++.++.+| .++.+ ....+.....+....++++..+..+ +|...+|||.++...||++++
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~- 605 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR- 605 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc-
Confidence 8888888888889888888 45543 2111111111222345566555432 567789999999999999986
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+-+++.. +|-.+.|+..-.
T Consensus 606 --~p~iLiLDEpTS~LD~~te~ 625 (686)
T TIGR03797 606 --KPRILLFDEATSALDNRTQA 625 (686)
T ss_pred --CCCEEEEeCCccCCCHHHHH
Confidence 4566654 454556665444
No 214
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.21 E-value=3.7e-06 Score=81.75 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=77.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH----------Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD----------EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~----------~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
+-|-..|+.|||++.+.+...+-. .+ ..+.+. .+.|.||+|-. .+.......+..+
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~a 74 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE--------RFRSVTHAYYRDA 74 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH--------HHHHhhHHHccCC
Confidence 345578999999999988654321 11 112222 34566999931 1122223456789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++. .+..++..+ ..+.|+|+|+||+|+..+.. ...+.......+.+++.+||+++.+
T Consensus 75 d~~i~v~D~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~ 150 (191)
T cd04112 75 HALLLLYDITNKASFD--NIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLN 150 (191)
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999998775432 223333222 23578999999999964321 1222333344577899999998866
No 215
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.21 E-value=1.3e-06 Score=81.83 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=41.6
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEE--c----CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLF--V----DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~--~----~~~~~liDtPGl~ 378 (595)
+|+++|.+|||||||+|+|++.. +.....+|+|.+..... . +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 48999999999999999999765 44456678887764322 2 3478999999974
No 216
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.20 E-value=6.4e-06 Score=79.97 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=76.3
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH---------Hh---hhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD---------EF---LQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~---------~f---~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
-|-..|++||+++.+.+...+-. .+ ....+.. +.+.||+|... + ..+++ ..+..+|++
T Consensus 3 ~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~---~~~~~---~~~~~ad~~ 74 (190)
T cd04144 3 VVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE--Y---TALRD---QWIREGEGF 74 (190)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchh--h---HHHHH---HHHHhCCEE
Confidence 34567899999999888643210 01 1123433 56799999421 1 11222 357789999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh-------CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV-------SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v-------~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
|+|+|..++.++. .+..++..+ ..+.|+|||.||+|+... .....+. ...+..++.+||+++.
T Consensus 75 ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~SAk~~~ 149 (190)
T cd04144 75 ILVYSITSRSTFE--RVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA---RRLGCEFIEASAKTNV 149 (190)
T ss_pred EEEEECCCHHHHH--HHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH---HHhCCEEEEecCCCCC
Confidence 9999998776543 233443322 145799999999999542 2222333 3346788999999987
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 150 ~ 150 (190)
T cd04144 150 N 150 (190)
T ss_pred C
Confidence 6
No 217
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.19 E-value=3e-06 Score=83.01 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=78.4
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc---CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR---RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr---g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
-|-..|+.||+++.+.+...+-. ....+. ...+.|.||+|.. +-..+|+ ..+..+|
T Consensus 4 vivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~-----~~~~~~~---~~~~~a~ 75 (201)
T cd04107 4 LVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE-----RFGGMTR---VYYRGAV 75 (201)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch-----hhhhhHH---HHhCCCC
Confidence 45578999999999998864211 112233 2345688999951 1112222 3578999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh--------CCCCcEEEEEeCCCCCCH--HHHHHHHHHHhhCC-CeEEEEecccC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV--------SPHKRNMILLNKADLLTR--KQRCYWTKYFNSVN-VAVAFFSATNI 242 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v--------~~~K~~ILVlNK~DLl~~--~~~~~w~~~~~~~g-i~vi~~SA~~~ 242 (595)
.+|+|+|..+|.++.. +..|+..+ ..+.|+|||.||+||.+. .......++.+..+ ..++.+||+++
T Consensus 76 ~~ilv~D~t~~~s~~~--~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~ 153 (201)
T cd04107 76 GAIIVFDVTRPSTFEA--VLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEG 153 (201)
T ss_pred EEEEEEECCCHHHHHH--HHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 9999999998876533 22232221 145789999999999631 11222333444456 57889999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 154 ~~ 155 (201)
T cd04107 154 IN 155 (201)
T ss_pred CC
Confidence 66
No 218
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.19 E-value=2.8e-06 Score=80.75 Aligned_cols=124 Identities=12% Similarity=0.052 Sum_probs=74.5
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEe
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVD 180 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvD 180 (595)
+-..|+.||+++.+.+...+-. ...++.+..+.+.||+|.... ...|+ ..+..+|.+++|+|
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~-----~~~~~---~~~~~ad~ii~V~D 75 (169)
T cd04158 4 TLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL-----RPLWK---HYYLNTQAVVFVVD 75 (169)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhc-----chHHH---HHhccCCEEEEEEe
Confidence 4456788888888887754221 112345667789999996321 11233 35688999999999
Q ss_pred CCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH---HHHHHHHHHHh---hCCCeEEEEecccCCC
Q psy9995 181 ARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR---KQRCYWTKYFN---SVNVAVAFFSATNIYD 244 (595)
Q Consensus 181 AR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~---~~~~~w~~~~~---~~gi~vi~~SA~~~~~ 244 (595)
+.++.++. .+..++..+ ..+.|++||.||+|+... ++...+..+.. ...+.++.+||+++.+
T Consensus 76 ~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 76 SSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred CCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 98875432 223333322 124789999999999643 33333332211 0012456689999876
No 219
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.19 E-value=4.4e-06 Score=78.74 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=79.1
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|+.||+++.+.+...+=. .| ....+. .+.+.||+|.. + +.......+..+|
T Consensus 5 i~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~---~~~~~~~~~~~~~ 76 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE-----R---FRAVTRSYYRGAA 76 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH-----H---HHHHHHHHhcCCC
Confidence 345577888999988888744210 11 123333 34577999942 1 1122234678999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+|+|+.+|.++. .+..++..+ ..+.|++||.||+|+... ++...|. ...+..++.+||+++.+
T Consensus 77 ~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sa~~~~~ 151 (166)
T cd04122 77 GALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFA---DENGLLFLECSAKTGEN 151 (166)
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHH---HHcCCEEEEEECCCCCC
Confidence 999999999886543 344555433 345789999999999643 3333333 34467889999999876
No 220
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1.3e-06 Score=98.69 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=91.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH-------------HHhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHH-hhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER-------------DEFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVI-ERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er-------------~~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vi-e~sD 173 (595)
+.+-.-||.||++++|+|++.-. +.....+++.++++|.||+-. +++-..+.+.|.. .+ +..|
T Consensus 6 valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~--ll~~~~D 83 (653)
T COG0370 6 VALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDF--LLEGKPD 83 (653)
T ss_pred EEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHH--HhcCCCC
Confidence 56677899999999999997643 256677778899999999753 5655555555553 33 4679
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHH-hhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYF-NSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~-~~~gi~vi~~SA~~~~~ 244 (595)
+||-|+||.+-. ++-.+--.+. +-++|+|+++|++|...+.-..-=.+.+ +..|++++++||+.+.|
T Consensus 84 ~ivnVvDAtnLe--RnLyltlQLl--E~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 84 LIVNVVDATNLE--RNLYLTLQLL--ELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred EEEEEcccchHH--HHHHHHHHHH--HcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCC
Confidence 999999997642 3333332233 4588999999999987653221111222 23499999999999887
No 221
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.18 E-value=1.1e-05 Score=73.38 Aligned_cols=126 Identities=14% Similarity=0.140 Sum_probs=92.4
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARN 183 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~ 183 (595)
++.+-++--|||.++.+.|.+++-- .-.+|...- .+|||| .+-.+...+..|.-....+|+|+.|..+.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~~--~IDTPG----Ey~~~~~~Y~aL~tt~~dadvi~~v~~and 76 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKG--DIDTPG----EYFEHPRWYHALITTLQDADVIIYVHAAND 76 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceeeccCcc--ccCCch----hhhhhhHHHHHHHHHhhccceeeeeecccC
Confidence 3455677889999999999887643 344453221 357777 244556666777788889999999999999
Q ss_pred CCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCe-EEEEecccCCC
Q psy9995 184 PLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVA-VAFFSATNIYD 244 (595)
Q Consensus 184 Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~-vi~~SA~~~~~ 244 (595)
|.+..++.+... ..+|+|=|++|+||..+.++..-.+++.+.|-. ++.+|+...++
T Consensus 77 ~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~g 133 (148)
T COG4917 77 PESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQG 133 (148)
T ss_pred ccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCccc
Confidence 988777776543 246799999999999888877777778777864 55577766544
No 222
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.18 E-value=5e-06 Score=77.76 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=77.3
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-..|+.||+++.+.+...+-. ....+.+ ..+.+.||+|...- ..+++ ..+..+|.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-----~~~~~---~~~~~~~~ 74 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF-----SAMRD---QYMRTGEG 74 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-----hHHHH---HHHhhCCE
Confidence 445678999999999998754321 0112333 34567899995321 11222 35678999
Q ss_pred EEEEEeCCCCCCCCchHHHHH---HHHh--CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERY---VKEV--SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~---lk~v--~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|+.++.++. .+..+ +... ..+.|+|+|.||+|+.+... ......+....+.+++.+||+++.+
T Consensus 75 ~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (164)
T smart00173 75 FLLVYSITDRQSFE--EIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVN 149 (164)
T ss_pred EEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCC
Confidence 99999998876542 22222 2211 23579999999999965321 1111222333467889999998776
No 223
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.17 E-value=5.8e-06 Score=77.99 Aligned_cols=128 Identities=10% Similarity=-0.021 Sum_probs=78.5
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH--H-------H-----hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER--D-------E-----FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er--~-------~-----f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.+-..|+.|||++.+.+....- . . ...+....+.+.||+|...- ..+++ ..+..+|.
T Consensus 4 v~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~---~~~~~~~~ 75 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF-----PAMQR---LSISKGHA 75 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc-----hHHHH---HHhhcCCE
Confidence 45567889999999998875421 1 0 11223345678999996421 11222 25678999
Q ss_pred EEEEEeCCCCCCCCc-hHHHHHHHHhC----CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRC-EDLERYVKEVS----PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~-~~Le~~lk~v~----~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+|+|..++.++.. ..+..+++.+. .+.|+|||.||+|+..... ...-..+....+..++.+||+++.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~ 152 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHN 152 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCC
Confidence 999999988776432 22223343321 4579999999999965221 1111222233456788899998765
No 224
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.17 E-value=4.8e-06 Score=77.56 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=76.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-..|+.||+++.+.+...+-. .+ ....+. .+.+.||+|... + ..+++ ..+..+|.
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~---~~~~~---~~~~~~~~ 75 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ--F---TAMRD---LYIKNGQG 75 (163)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc--c---chHHH---HHhhcCCE
Confidence 456678999999999988753210 01 112332 345789999531 1 12222 24678999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|..++.++. .+..++..+ ..+.|+|+|.||+|+.+.... ..-..+.+..+.+++.+||+++.+
T Consensus 76 ~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd04136 76 FVLVYSITSQSSFN--DLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKIN 150 (163)
T ss_pred EEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999998876542 233333222 236799999999999653211 111122233357889999998876
No 225
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.16 E-value=1.1e-05 Score=83.00 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=56.1
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
...|.+..+.|+||||.. ++..++...+..+|.+++|+|+..+.......+.+++. ..+.|.++|+||+|
T Consensus 58 ~~~~~~~~i~liDtPG~~--------~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~--~~~~p~iivvNK~D 127 (268)
T cd04170 58 PLEWKGHKINLIDTPGYA--------DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFAD--EAGIPRIIFINKMD 127 (268)
T ss_pred EEEECCEEEEEEECcCHH--------HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECCc
Confidence 456888899999999963 34456677889999999999998776544344444444 34689999999999
Q ss_pred CCCH
Q psy9995 214 LLTR 217 (595)
Q Consensus 214 Ll~~ 217 (595)
+...
T Consensus 128 ~~~~ 131 (268)
T cd04170 128 RERA 131 (268)
T ss_pred cCCC
Confidence 8754
No 226
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.16 E-value=1.4e-06 Score=92.24 Aligned_cols=55 Identities=42% Similarity=0.474 Sum_probs=43.4
Q ss_pred EEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc---------------------C----CceEEEeCCCC
Q psy9995 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV---------------------D----DELLLCDCPGL 377 (595)
Q Consensus 325 i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~---------------------~----~~~~liDtPGl 377 (595)
|++||.||||||||+|+|++.. +.|++.|++|..... ..+ + -.+.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999876 689999999876432 111 1 24789999999
Q ss_pred ccC
Q psy9995 378 VMP 380 (595)
Q Consensus 378 ~~p 380 (595)
+..
T Consensus 80 v~g 82 (318)
T cd01899 80 VPG 82 (318)
T ss_pred CCC
Confidence 743
No 227
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.16 E-value=4.3e-06 Score=80.90 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=77.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH--------------hhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE--------------FLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~--------------f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
+-|-..|+.|||++.+.+....-.. ...+.+.. +.+.||+|... + ..+++ ..+..+
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~---~~~~~---~~~~~~ 74 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER--Y---EAMSR---IYYRGA 74 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchh--h---hhhhH---hhcCCC
Confidence 4456789999999999988542110 11223332 34779998421 1 11121 245689
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHH------HHHHHHHHhhCCCeEEEEecccCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQ------RCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~------~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
|++|+|+|+.++.++.. +..++..+ ..+.|++||.||+|+.+... ......+....+..++.+||+++.
T Consensus 75 d~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (193)
T cd04118 75 KAAIVCYDLTDSSSFER--AKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQ 152 (193)
T ss_pred CEEEEEEECCCHHHHHH--HHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 99999999987754422 23333332 34689999999999864321 112223334446788899999887
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 153 g 153 (193)
T cd04118 153 N 153 (193)
T ss_pred C
Confidence 6
No 228
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.16 E-value=4.1e-06 Score=80.92 Aligned_cols=125 Identities=18% Similarity=0.083 Sum_probs=73.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHH-HHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWR-VIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~-vie~s 172 (595)
+.+-..|+.||+++.+.+...+-. ....+.+..+.+.||+|.. + ++.+|. .+..+
T Consensus 6 v~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----~----~~~~~~~~~~~~ 76 (183)
T cd04152 6 IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE-----K----LRPLWKSYTRCT 76 (183)
T ss_pred EEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcH-----h----HHHHHHHHhccC
Confidence 344566777777777777543211 0013345678899999942 1 222333 46789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH---HHHHHHHHHHh---hCCCeEEEEeccc
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR---KQRCYWTKYFN---SVNVAVAFFSATN 241 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~---~~~~~w~~~~~---~~gi~vi~~SA~~ 241 (595)
|++|+|+|+.++..+. .+..++.++ ..++|++||+||+|+... ++...+..+.. ..+..++.+||++
T Consensus 77 d~ii~v~D~~~~~~~~--~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 77 DGIVFVVDSVDVERME--EAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence 9999999998764321 122222211 246899999999998642 33332222110 1123577899999
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.|
T Consensus 155 ~~g 157 (183)
T cd04152 155 GEG 157 (183)
T ss_pred CCC
Confidence 876
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.16 E-value=1.1e-05 Score=81.31 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=51.4
Q ss_pred CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 139 RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 139 g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
+..+.|+||||... +.......+..+|.+|+|+|+..+.......+.+.+. ..+.|+|+|+||+|+.
T Consensus 72 ~~~i~iiDTPG~~~--------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~--~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVD--------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQAL--KERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccc--------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECCCcc
Confidence 66788999999753 4556778899999999999999877654444444433 3467999999999986
No 230
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.15 E-value=4.3e-07 Score=105.55 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=94.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.+|+
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~-----------------~p~~G~I~id--g~~l~~-------------~~~~~lr~ 539 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLY-----------------QPTEGSVLLD--GVDIRQ-------------IDPADLRR 539 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCceEEEC--CEEhhh-------------CCHHHHHh
Confidence 468999999999999999999866 3455667788 765443 46677888
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.+| .|+.+.....+..........++++..++.+ +|...+|||.++...||.+++
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~- 618 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR- 618 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc-
Confidence 8888888888888888888 4553211111111111222355666665442 677889999999999999995
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+.+++.. +|--+.|+..-.
T Consensus 619 --~p~iliLDE~Ts~LD~~te~ 638 (694)
T TIGR03375 619 --DPPILLLDEPTSAMDNRSEE 638 (694)
T ss_pred --CCCEEEEeCCCCCCCHHHHH
Confidence 5677654 455556765544
No 231
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.15 E-value=1.3e-06 Score=91.50 Aligned_cols=57 Identities=33% Similarity=0.528 Sum_probs=47.7
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEc--CCceEEEeCCCCccCC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFV--DDELLLCDCPGLVMPS 381 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~--~~~~~liDtPGl~~p~ 381 (595)
-||+||+||+|||||||++...+ ..+++.|.||.+.. .+.+ ...+++-|-|||+...
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA 221 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA 221 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCccccccc
Confidence 48999999999999999999654 89999999999843 3443 5569999999999554
No 232
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.14 E-value=2.1e-06 Score=80.02 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=41.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcCC---ceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~~---~~~liDtPGl~ 378 (595)
+|+++|.+|||||||+|+|++.. +..+..|+.|.++.. +.++. .+.++||||..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 68999999999999999999765 445667777766543 33332 47899999954
No 233
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.13 E-value=4.3e-06 Score=84.20 Aligned_cols=61 Identities=26% Similarity=0.271 Sum_probs=48.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCc-ceeEecCC-CCCceeeEEEEc------CCceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNA-KKVSVSAT-PGKTKHFQTLFV------DDELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~-~kvsVs~t-PG~TKh~Qti~~------~~~~~liDtPGl~~p~ 381 (595)
....|+++|.+++|||||+|.|++. ..+.+++. +.+|+.+..... +..++++||||+.-+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccc
Confidence 3467999999999999999999997 35676654 778998764322 3679999999998554
No 234
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.13 E-value=6.8e-06 Score=73.25 Aligned_cols=124 Identities=13% Similarity=0.005 Sum_probs=78.7
Q ss_pred CCCCCCcCCCHHHHHHHHH---------HHhhhh------cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 113 RRPKWDKNTTAEQLQAMER---------DEFLQW------RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 113 rRPnw~kst~~n~L~~~Er---------~~f~~w------rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
..|+.|||++.+.+..... ..+..+ .+..+.+.|++|...... .+ ...+..+|.+++
T Consensus 3 G~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~---~~~~~~~~~~i~ 74 (157)
T cd00882 3 GDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS-----LR---RLYYRGADGIIL 74 (157)
T ss_pred CcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-----HH---HHHhcCCCEEEE
Confidence 5788999999999887544 111111 145577899999543211 11 346778999999
Q ss_pred EEeCCCCCCCCchHHH---HHHHHhCCCCcEEEEEeCCCCCCHHHHHHH---HHHHhhCCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLE---RYVKEVSPHKRNMILLNKADLLTRKQRCYW---TKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le---~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w---~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|+|+.+|......... ........++|+++|+||+|+......... .......+.+++.+|+..+.+
T Consensus 75 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 75 VYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 9999987653322211 111112457899999999999876544332 122223356889999987765
No 235
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.13 E-value=4.6e-06 Score=79.20 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=79.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH-H--------Hhhh------hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER-D--------EFLQ------WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er-~--------~f~~------wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..++.||+++.+.+...+- . .+.. +....+.+.||+|..... .+++ ..+..+|
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~---~~~~~~d 74 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFG-----GLRD---GYYIGGQ 74 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhc-----cccH---HHhcCCC
Confidence 34557889999999999874331 1 1111 123456788999953211 1111 2456899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++. .+..++..+ ..+.|+++|.||+|+........-..+....+..++.+||+++.+
T Consensus 75 ~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 146 (166)
T cd00877 75 CAIIMFDVTSRVTYK--NVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYN 146 (166)
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999998876542 334444433 336899999999999633211111223334567899999999876
No 236
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.12 E-value=2.6e-06 Score=80.05 Aligned_cols=127 Identities=12% Similarity=-0.010 Sum_probs=79.8
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH------------Hhhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD------------EFLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~------------~f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
-|-..|+.|||++.++|....-. ....+. ...+.+.||+|...-. .++. ..++.+|++
T Consensus 4 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~------~~~~--~~~~~~~~~ 75 (171)
T cd00157 4 VVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD------RLRP--LSYPNTDVF 75 (171)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccc------ccch--hhcCCCCEE
Confidence 35568999999999999866420 112222 3346789999964321 1111 144789999
Q ss_pred EEEEeCCCCCCCCchH--HHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHH-------------HHHHhhCCC-eEEEEec
Q psy9995 176 VQIVDARNPLLFRCED--LERYVKEVSPHKRNMILLNKADLLTRKQRCYW-------------TKYFNSVNV-AVAFFSA 239 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~--Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w-------------~~~~~~~gi-~vi~~SA 239 (595)
++|+|+.++.++.... +...+.....+.|+++|+||+|+........| .++....+. .++.+||
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 155 (171)
T cd00157 76 LICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSA 155 (171)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeec
Confidence 9999998876543221 12222222346899999999999766533221 223334455 7889999
Q ss_pred ccCCC
Q psy9995 240 TNIYD 244 (595)
Q Consensus 240 ~~~~~ 244 (595)
+++.+
T Consensus 156 ~~~~g 160 (171)
T cd00157 156 LTQEG 160 (171)
T ss_pred CCCCC
Confidence 98876
No 237
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.12 E-value=1.8e-06 Score=88.30 Aligned_cols=64 Identities=30% Similarity=0.250 Sum_probs=48.1
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCC----CCceeeEEEEcCCceEEEeCCCCccCCccc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP----GKTKHFQTLFVDDELLLCDCPGLVMPSFVF 384 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP----G~TKh~Qti~~~~~~~liDtPGl~~p~f~~ 384 (595)
..++.|.++|.+|||||||||+|++.....|+.++ =+|.+.+.+.. ..++|.||||+-...-.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhh
Confidence 35688999999999999999999975555555444 24555666665 789999999998655434
No 238
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.12 E-value=3.5e-06 Score=79.65 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=41.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|.+.......++.|.+...-.. .+..+.++||||..
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~ 69 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR 69 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 3689999999999999999999987544455666654432111 24567899999964
No 239
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.11 E-value=2.2e-06 Score=78.40 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=41.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
++|+++|.||||||||+|+|.+..-... ..+.|.+.....+..+ -.+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 4799999999999999999997664443 4555655555555542 357899999974
No 240
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.11 E-value=5.4e-06 Score=82.31 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=77.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhc---CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWR---RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wr---g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
+.|-..|++|||++.+.|...+-. .+ ..+. ...+.|.||+|... -..++. ..+..+
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----~~~l~~---~~~~~a 74 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----GGKMLD---KYIYGA 74 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----HHHHHH---HHhhcC
Confidence 345678999999999999754211 00 1121 23556889999421 112222 347799
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh---C----CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV---S----PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v---~----~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
|+||+|+|+.+|.++. .+..++..+ . .+.|+|+|.||+||....+ ......+.+..+..++++||+++.
T Consensus 75 d~iilV~D~t~~~s~~--~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~ 152 (215)
T cd04109 75 HAVFLVYDVTNSQSFE--NLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGD 152 (215)
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCC
Confidence 9999999999887653 333333322 1 1246889999999974321 111122223346788999999987
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 153 g 153 (215)
T cd04109 153 R 153 (215)
T ss_pred C
Confidence 6
No 241
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.11 E-value=5e-07 Score=105.39 Aligned_cols=139 Identities=22% Similarity=0.246 Sum_probs=93.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.++.
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~gl~-----------------~p~~G~I~id--g~~i~~-------------~~~~~lr~ 555 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQNLY-----------------QPTGGQVLLD--GVPLVQ-------------YDHHYLHR 555 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-----------------CCCCCEEEEC--CEEHHh-------------cCHHHHHh
Confidence 468999999999999999999865 3455667788 754333 45667788
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.+| .|+.+.....+.....+....++++..+..+ +|...+|||.++...||.+++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~- 634 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR- 634 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc-
Confidence 8888887777888888888 5665321111111111222345566655432 567789999999999999986
Q ss_pred HHhCCceee-cCCCCCChhhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYHI 496 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~~ 496 (595)
+.+++-. +|-.+.|+..-+.
T Consensus 635 --~p~ILILDEpTSaLD~~te~~ 655 (711)
T TIGR00958 635 --KPRVLILDEATSALDAECEQL 655 (711)
T ss_pred --CCCEEEEEccccccCHHHHHH
Confidence 5677644 4555566654333
No 242
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.11 E-value=4.9e-07 Score=105.28 Aligned_cols=138 Identities=18% Similarity=0.159 Sum_probs=91.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.+|.
T Consensus 506 e~vaIvG~sGsGKSTLlklL~gl~-----------------~p~~G~I~id--g~~i~~-------------~~~~~lr~ 553 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLVAGLY-----------------QPWSGEILFD--GIPREE-------------IPREVLAN 553 (710)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCcEEEEC--CEeHHH-------------CCHHHHHh
Confidence 478999999999999999999966 3455677888 765433 45667888
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.+.+-...++.++.+|. ++.+.....+.....+....++++..+..+ +|...+|||.++...||.+++
T Consensus 554 ~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~- 632 (710)
T TIGR03796 554 SVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR- 632 (710)
T ss_pred heeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh-
Confidence 88888777778888888873 443211110000011111234555544332 677889999999999999976
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+-+++.. +|-.+.|+..=.
T Consensus 633 --~p~iliLDEptS~LD~~te~ 652 (710)
T TIGR03796 633 --NPSILILDEATSALDPETEK 652 (710)
T ss_pred --CCCEEEEECccccCCHHHHH
Confidence 4677655 444556654433
No 243
>KOG1490|consensus
Probab=98.10 E-value=7.6e-06 Score=89.15 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=98.4
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
+...|-|-.-||+|||+..+-+.+.+-+ ....+.=..++++|||||...|+|..+.+--|...++..
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH 246 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH 246 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence 3445667788999999988888877655 334455556789999999999988766555555455553
Q ss_pred -cCeEEEEEeCCCCCCCCchH---HHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHhhCC-CeEEEEecccC
Q psy9995 172 -SDVIVQIVDARNPLLFRCED---LERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFNSVN-VAVAFFSATNI 242 (595)
Q Consensus 172 -sDvVl~VvDAR~Pl~~~~~~---Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~~~g-i~vi~~SA~~~ 242 (595)
--.||++.|.+.--.+.-.+ |...++.+..+|+.|+|+||+|++.++. .++..+.+...| ++++-.|+.+.
T Consensus 247 LraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 35789999987544443333 3344554567999999999999987643 345555565555 78888998877
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.|
T Consensus 327 eg 328 (620)
T KOG1490|consen 327 EG 328 (620)
T ss_pred hc
Confidence 66
No 244
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.09 E-value=7.7e-06 Score=80.02 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=76.2
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
-|-..++.||+++++.+...+-. ....|.+ ..+.|.||+|..... .+++ ..+..+|++
T Consensus 3 ~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-----~~~~---~~~~~ad~v 74 (198)
T cd04147 3 VFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP-----AMRK---LSIQNSDAF 74 (198)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh-----HHHH---HHhhcCCEE
Confidence 34567888888888888653211 1123444 356789999953211 1111 256899999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH-HH--HHHHHHHHh-hCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR-KQ--RCYWTKYFN-SVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~-~~--~~~w~~~~~-~~gi~vi~~SA~~~~~ 244 (595)
|+|+|+.++.++. .+..++..+ ..+.|+|||+||+|+.+. .. .....+.+. ..+..++.+||+++.+
T Consensus 75 ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g 150 (198)
T cd04147 75 ALVYAVDDPESFE--EVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNEN 150 (198)
T ss_pred EEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCC
Confidence 9999998876542 222222221 246899999999999763 21 111122222 2346788999999877
No 245
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.09 E-value=7.1e-07 Score=101.79 Aligned_cols=137 Identities=20% Similarity=0.168 Sum_probs=93.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.+++
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~-----------------~p~~G~I~id--g~~i~~-------------~~~~~l~~ 415 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYY-----------------PLTEGEIRLD--GRPLSS-------------LSHSVLRQ 415 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc-----------------CCCCceEEEC--CEEhhh-------------CCHHHHHh
Confidence 468999999999999999999866 3445667788 654333 45677888
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
++..+.+-...++.++.+| .|+.. ....+.+...+....++++..+..+ +|...+|||.++...||.+++
T Consensus 416 ~i~~v~Q~~~lF~~Ti~~NI~~~~~-~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~- 493 (592)
T PRK10790 416 GVAMVQQDPVVLADTFLANVTLGRD-ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ- 493 (592)
T ss_pred heEEEccCCccccchHHHHHHhCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh-
Confidence 8888888888888888887 45532 1111111111222345555554322 677789999999999999996
Q ss_pred HHhCCcee-ecCCCCCChhhhh
Q psy9995 475 FVNGHLLY-CQAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~-~~~PP~~~~~~f~ 495 (595)
+..++- -+|..+.|+..-.
T Consensus 494 --~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 494 --TPQILILDEATANIDSGTEQ 513 (592)
T ss_pred --CCCEEEEeCCcccCCHHHHH
Confidence 446664 4666677776544
No 246
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.09 E-value=2.9e-06 Score=83.30 Aligned_cols=58 Identities=29% Similarity=0.297 Sum_probs=40.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCC---CceeeEEEEc--CCceEEEeCCCCccC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPG---KTKHFQTLFV--DDELLLCDCPGLVMP 380 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG---~TKh~Qti~~--~~~~~liDtPGl~~p 380 (595)
++|+++|.+|||||||||+|++..... .+...| +|.....+.. ...+.++||||+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 689999999999999999999854322 222223 3444443332 247899999998743
No 247
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.09 E-value=4.1e-06 Score=78.10 Aligned_cols=56 Identities=32% Similarity=0.368 Sum_probs=42.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|++.... ...+++|.+.....+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 47999999999999999999976533 3566777766655554432 57899999964
No 248
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.07 E-value=9.8e-06 Score=76.58 Aligned_cols=129 Identities=15% Similarity=0.047 Sum_probs=82.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH------H----hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD------E----FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~------~----f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
...+.|-..|+.|||++++.+.+.+.. . ...+.+..+.+.||+|... +.......++.+|.+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~~~~i 85 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRA--------IRPYWRNYFENTDCL 85 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcCCCEE
Confidence 455778889999999999999875321 1 3445677788899998421 112223457899999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhC-----CCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFNSV-----NVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~-----gi~vi~~SA~~~~~ 244 (595)
++|+|+.++..+. ....++..+ ..+.|+++|+||+|+..........+.+.-. ...++.+||+++.+
T Consensus 86 i~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 86 IYVIDSADKKRLE--EAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EEEEeCCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 9999998754321 122222211 2358999999999997654344444433211 12467899998876
No 249
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.07 E-value=9.2e-06 Score=79.64 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=80.4
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH--H-------Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER--D-------EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er--~-------~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.||+++.+.+...+= . .+ ..+.+. .+.|.||+|... +.......+..+
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~~a 79 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER--------FRTITSTYYRGT 79 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchh--------HHHHHHHHhCCC
Confidence 455667889999999988875421 1 01 112232 356789999421 111123366789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|.+|+|+|+.++.++. .+..++..+ ....|++||.||+|+.+... ......+....+..++.+||+++.+
T Consensus 80 ~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g 154 (199)
T cd04110 80 HGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154 (199)
T ss_pred cEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence 9999999998876542 344444433 34578999999999975422 1223334445577889999998876
No 250
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.07 E-value=2.2e-05 Score=91.35 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=83.9
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc----CeeeEEEeCCCcccChhhhhHHHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR----RELNLLQEEDGLVITPYEKNLDFWRQLWR 167 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr----g~~~~L~DT~Gi~~t~~ern~e~~rql~~ 167 (595)
....+.|-..++.||+|+++.|....-. ....|. +..+.|+||||.. .+.....+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe--------~F~~mr~r 314 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE--------AFSSMRSR 314 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHH--------HHHHHHHH
Confidence 3356677778899999999999754221 112342 3678899999942 22333345
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--HHHHHHH-HH---HhhCC--CeEEEEec
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR--KQRCYWT-KY---FNSVN--VAVAFFSA 239 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~--~~~~~w~-~~---~~~~g--i~vi~~SA 239 (595)
.+..+|++|+|+|+.+............+. ..+.|+|+|+||+|+... .....+. .+ ....| ++++++||
T Consensus 315 g~~~aDiaILVVDA~dGv~~QT~E~I~~~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 315 GANVTDIAILIIAADDGVKPQTIEAINYIQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred HHHHCCEEEEEEECcCCCChhhHHHHHHHH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 788999999999998765433223333333 357899999999999653 2222222 21 11122 57899999
Q ss_pred ccCCC
Q psy9995 240 TNIYD 244 (595)
Q Consensus 240 ~~~~~ 244 (595)
+++.+
T Consensus 393 ktG~G 397 (742)
T CHL00189 393 SQGTN 397 (742)
T ss_pred CCCCC
Confidence 99876
No 251
>PRK10218 GTP-binding protein; Provisional
Probab=98.07 E-value=1.4e-05 Score=91.33 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=70.9
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
..+|.+..+.++||||... +.......+..+|.+|+|+|+.+........+...+. ..+.|.|+|+||+|
T Consensus 62 ~i~~~~~~inliDTPG~~d--------f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~--~~gip~IVviNKiD 131 (607)
T PRK10218 62 AIKWNDYRINIVDTPGHAD--------FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAF--AYGLKPIVVINKVD 131 (607)
T ss_pred EEecCCEEEEEEECCCcch--------hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHH--HcCCCEEEEEECcC
Confidence 4579999999999999542 2334456789999999999998765444444444433 35789999999999
Q ss_pred CCC---HHHHHHHHHHHhh-------CCCeEEEEecccCCC
Q psy9995 214 LLT---RKQRCYWTKYFNS-------VNVAVAFFSATNIYD 244 (595)
Q Consensus 214 Ll~---~~~~~~w~~~~~~-------~gi~vi~~SA~~~~~ 244 (595)
+.. .+......+.|.. ..+++++.||.++.+
T Consensus 132 ~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 132 RPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred CCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 853 2334455555533 235689999998875
No 252
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.06 E-value=9.5e-06 Score=94.97 Aligned_cols=129 Identities=11% Similarity=0.006 Sum_probs=82.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHH-------------HHhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMER-------------DEFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er-------------~~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.+.|-..++.||+|+.+.|....- .....|.+..+.|+||||.. .| .....+.+..+|
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe--~F------~~m~~rga~~aD 362 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE--AF------TAMRARGAQVTD 362 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCc--cc------hhHHHhhhhhCC
Confidence 3455555667899999999964221 13356778889999999953 12 112234678899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC--HHHHHHHHHH---H-hhCC--CeEEEEecccCCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT--RKQRCYWTKY---F-NSVN--VAVAFFSATNIYDD 245 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~--~~~~~~w~~~---~-~~~g--i~vi~~SA~~~~~~ 245 (595)
++|+|+|+.+...........++. ..+.|+|||+||+|+.. .......... + ...| ++++++||+++.+.
T Consensus 363 iaILVVdAddGv~~qT~e~i~~a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIEAINHAK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEEEEEECCCCCCHhHHHHHHHHH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999999998865433333333333 35789999999999954 2222221111 1 1112 57899999998873
No 253
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.06 E-value=7.8e-06 Score=78.63 Aligned_cols=124 Identities=15% Similarity=0.070 Sum_probs=76.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------Hh---hhhc-Ce--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------EF---LQWR-RE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~f---~~wr-g~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.|-..|+.||+++.+.+...+-. .+ .... +. .+.+.||+|.. +-..++. ..+..+|
T Consensus 3 i~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~-----~~~~~~~---~~~~~ad 74 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE-----EYDRLRP---LSYPDVD 74 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch-----hHHHHHH---HhCCCCC
Confidence 345678899999999998865411 11 1111 22 34577999842 1111121 2567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCH---------HHHHHHHHHHhhCCC-eEEEEecc
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTR---------KQRCYWTKYFNSVNV-AVAFFSAT 240 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~---------~~~~~w~~~~~~~gi-~vi~~SA~ 240 (595)
+||+|+|+.++.++.... ..|+..+ ..+.|+|||.||+||.+. .+...| ....+. .++.+||+
T Consensus 75 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~---~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 75 VLLICYAVDNPTSLDNVE-DKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV---AKKQGAFAYLECSAK 150 (187)
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHH---HHHcCCcEEEEccCC
Confidence 999999998877653321 1233322 356899999999999652 222233 334466 78899999
Q ss_pred cCCC
Q psy9995 241 NIYD 244 (595)
Q Consensus 241 ~~~~ 244 (595)
++.+
T Consensus 151 ~~~~ 154 (187)
T cd04132 151 TMEN 154 (187)
T ss_pred CCCC
Confidence 8876
No 254
>PLN03118 Rab family protein; Provisional
Probab=98.06 E-value=1e-05 Score=79.92 Aligned_cols=130 Identities=12% Similarity=0.002 Sum_probs=81.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH--------h----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE--------F----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~--------f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.||+++.+.|....... + ..+.+ ..+.|.||+|... + .......+..+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--~------~~~~~~~~~~~ 86 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER--F------RTLTSSYYRNA 86 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh--h------HHHHHHHHhcC
Confidence 356677899999999999987644320 1 12333 3457889999532 1 11123457789
Q ss_pred CeEEEEEeCCCCCCCCchH--HHHHHHHh--CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCED--LERYVKEV--SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~--Le~~lk~v--~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++.... ....+... ..+.+.|||.||+|+..... ......+....+..++.+||+++.+
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN 164 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999998876543221 11122211 23468899999999964322 1222333445577888999998766
No 255
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.05 E-value=7.6e-07 Score=103.72 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=93.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.+|.
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~gl~-----------------~p~~G~I~id--g~~i~~-------------~~~~~lr~ 548 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVGFF-----------------QARSGEILLN--GFSLKD-------------IDRHTLRQ 548 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC-----------------CCCCcEEEEC--CEEHHH-------------cCHHHHHH
Confidence 478999999999999999999865 3455667788 764333 56677888
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCC-CCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGI-MITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i-~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
.++.+.+-...++.++.+| .|+. +.....+.....+....++++..+..+ +|...+|||.++...||++++
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 8888888888888888888 4552 111110101111122345566555432 677789999999999999998
Q ss_pred HHHhCCceee-cCCCCCChhhhh
Q psy9995 474 DFVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 474 D~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+ -+++.. +|-.+.|+..-.
T Consensus 629 ~---p~iliLDE~Ts~LD~~te~ 648 (708)
T TIGR01193 629 D---SKVLILDESTSNLDTITEK 648 (708)
T ss_pred C---CCEEEEeCccccCCHHHHH
Confidence 5 466644 555667766555
No 256
>PLN03130 ABC transporter C family member; Provisional
Probab=98.05 E-value=8.1e-07 Score=111.66 Aligned_cols=135 Identities=20% Similarity=0.190 Sum_probs=92.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|||||.+|+|||||+++|++-. ....+-+++| |+.... ++.+.+|.
T Consensus 1266 ekVaIVGrSGSGKSTLl~lL~rl~-----------------~p~~G~I~ID--G~dI~~-------------i~l~~LR~ 1313 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNALFRIV-----------------ELERGRILID--GCDISK-------------FGLMDLRK 1313 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcC-----------------CCCCceEEEC--CEeccc-------------CCHHHHHh
Confidence 479999999999999999999865 4456778899 876554 57788898
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..|.+....+++++.+|. |+.. ....+..++.+.....+++..+..+ +|-..++||.++...||++|++
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~~~-~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcCCC-CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 88888888888888888773 3221 1111111111122344555544322 6777899999999999999974
Q ss_pred HHhCCceee-cCCCCCChhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEK 493 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~ 493 (595)
-+++-. ++-...|.+.
T Consensus 1393 ---p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1393 ---SKILVLDEATAAVDVRT 1409 (1622)
T ss_pred ---CCEEEEECCCCCCCHHH
Confidence 677654 5555566543
No 257
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.05 E-value=6.2e-06 Score=77.57 Aligned_cols=124 Identities=17% Similarity=0.128 Sum_probs=74.4
Q ss_pred cCCCCCCCCcCCCHHHHHHHHH---------H---HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMER---------D---EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er---------~---~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
.|-..|+.||+++.+.+....- . ....+.+. .+.+.||+|..... .......+..+|++
T Consensus 3 ~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~d~~ 75 (165)
T cd04146 3 AVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD-------TEQLERSIRWADGF 75 (165)
T ss_pred EEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc-------cchHHHHHHhCCEE
Confidence 3445788888888877653110 0 11223333 35689999965311 11122356789999
Q ss_pred EEEEeCCCCCCCCc-hHHHHHHHHhC---CCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCC
Q psy9995 176 VQIVDARNPLLFRC-EDLERYVKEVS---PHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 176 l~VvDAR~Pl~~~~-~~Le~~lk~v~---~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
|+|+|+.++.++.. ..+...+.... .+.|+|+|.||+|+... ++...|. +..+..++.+||+++.
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~Sa~~~~ 149 (165)
T cd04146 76 VLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA---SELGCLFFEVSAAEDY 149 (165)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH---HHcCCEEEEeCCCCCc
Confidence 99999988765432 11222333322 36899999999998532 2223333 3346778889998874
No 258
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.05 E-value=5.6e-06 Score=77.22 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=42.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|++..... ...++|.+....++.++ -.+.++||||..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~ 61 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH
Confidence 689999999999999999999876443 56666755444444443 256799999953
No 259
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.05 E-value=1.4e-05 Score=77.25 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=77.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH---------h----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE---------F----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~---------f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..++.|||++.+.+....-.. + ....+ ..+.+.||+|.. +... .....++.+|
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~-----~~~~---~~~~~~~~~d 74 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE-----RFRS---LNNSYYRGAH 74 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH-----HHHh---hHHHHccCCC
Confidence 3455678899999999887543210 0 11222 234678999942 1111 2234678999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+|+|+.++.++. .+..|+..+ ....|+|+|.||+|+... .....|. ...+++++.+||+++.+
T Consensus 75 ~iilv~d~~~~~s~~--~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~evSa~~~~~ 149 (188)
T cd04125 75 GYLLVYDVTDQESFE--NLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC---DSLNIPFFETSAKQSIN 149 (188)
T ss_pred EEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH---HHcCCeEEEEeCCCCCC
Confidence 999999998876542 344444433 234688999999999743 2222333 33477899999998765
No 260
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.04 E-value=5.1e-06 Score=79.10 Aligned_cols=56 Identities=29% Similarity=0.320 Sum_probs=41.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|.+.....+.+|.|.... .+.+ ...+.++||||..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence 457899999999999999999998755455666664332 2222 3457899999974
No 261
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.04 E-value=2.1e-06 Score=85.10 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=40.6
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecC------------------------------CCCCceeeEEEEc---CCceE
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSA------------------------------TPGKTKHFQTLFV---DDELL 370 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~------------------------------tPG~TKh~Qti~~---~~~~~ 370 (595)
+|++||.+|+|||||+|+|+....+.++. .+|+|.+.....+ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 48999999999999999998655443321 1778877543332 55789
Q ss_pred EEeCCCCc
Q psy9995 371 LCDCPGLV 378 (595)
Q Consensus 371 liDtPGl~ 378 (595)
|+||||+.
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999974
No 262
>PRK13768 GTPase; Provisional
Probab=98.04 E-value=2.8e-05 Score=79.78 Aligned_cols=84 Identities=19% Similarity=0.090 Sum_probs=54.4
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh--cCeEEEEEeCCCCCCCCchHHHHHHH---HhCCCCcEEEEEeCCCC
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER--SDVIVQIVDARNPLLFRCEDLERYVK---EVSPHKRNMILLNKADL 214 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~--sDvVl~VvDAR~Pl~~~~~~Le~~lk---~v~~~K~~ILVlNK~DL 214 (595)
.-+.++||||... ++.. ...++.+.+.++. +++|++|+|++.+....+.....++. ....++|+|+|+||+|+
T Consensus 97 ~~~~~~d~~g~~~-~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQME-LFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHH-HHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 3577999999654 2221 2335555566665 89999999998755433333333222 12357899999999999
Q ss_pred CCHHHHHHHHH
Q psy9995 215 LTRKQRCYWTK 225 (595)
Q Consensus 215 l~~~~~~~w~~ 225 (595)
++..+.....+
T Consensus 175 ~~~~~~~~~~~ 185 (253)
T PRK13768 175 LSEEELERILK 185 (253)
T ss_pred cCchhHHHHHH
Confidence 98765544433
No 263
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3.3e-06 Score=89.75 Aligned_cols=58 Identities=34% Similarity=0.491 Sum_probs=46.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EE-------------------cCCceEEEeCCCCccCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LF-------------------VDDELLLCDCPGLVMPS 381 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~-------------------~~~~~~liDtPGl~~p~ 381 (595)
+++||||.||||||||+|+|+... +.+.+.|.+|-+.-. +. +...+.++|.+|++...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 689999999999999999999888 899999999976321 11 12357899999999553
No 264
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.04 E-value=1.5e-05 Score=75.10 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=69.4
Q ss_pred CCCCCCCcCCCHHHHHHHHHHH----------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeC
Q psy9995 112 PRRPKWDKNTTAEQLQAMERDE----------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDA 181 (595)
Q Consensus 112 prRPnw~kst~~n~L~~~Er~~----------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDA 181 (595)
-..++.||+++.+.+...+-.. -.......+.|.||+|.. +-..+| ...+..+|++|+|+|+
T Consensus 6 ~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~---~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 6 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD-----KIRPLW---RHYFQNTQGLIFVVDS 77 (159)
T ss_pred ECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCH-----hHHHHH---HHHhcCCCEEEEEEeC
Confidence 3456666776666664221110 112344667889999952 111222 2357899999999999
Q ss_pred CCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHH-----hhCCCeEEEEecccCCC
Q psy9995 182 RNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYF-----NSVNVAVAFFSATNIYD 244 (595)
Q Consensus 182 R~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~-----~~~gi~vi~~SA~~~~~ 244 (595)
.++.++. .+..++..+ . ...|++||.||+||............+ ...+..++.+||+++.|
T Consensus 78 ~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 78 NDRERIG--EAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CCHHHHH--HHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 8765432 122222222 1 247999999999996431112222222 11233456689999877
No 265
>PLN03118 Rab family protein; Provisional
Probab=98.04 E-value=5.3e-06 Score=82.02 Aligned_cols=58 Identities=26% Similarity=0.325 Sum_probs=44.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|++||.+|||||||+|+|++......+++.|.+.....+.++. .+.|+||||..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 35899999999999999999999876545566666655555555543 57899999974
No 266
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.03 E-value=9.3e-06 Score=81.56 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=62.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
+-|-..|++||+++.+.+...+-. ....|....+.+.||+|... + ..++. ..+..+|++|+|
T Consensus 3 IvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~--~---~~l~~---~~~~~ad~~IlV 74 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQ--F---HGLGS---MYCRGAAAVILT 74 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCccc--c---hhhHH---HHhccCCEEEEE
Confidence 345567888888888887654311 11234445567899999531 2 11222 246789999999
Q ss_pred EeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCC
Q psy9995 179 VDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLT 216 (595)
Q Consensus 179 vDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~ 216 (595)
+|+.++.++.+ +..++..+ ..+.|+|||.||+||..
T Consensus 75 ~Dvt~~~Sf~~--l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 75 YDVSNVQSLEE--LEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EECCCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 99998876543 32222211 23578999999999965
No 267
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.03 E-value=2.1e-05 Score=73.79 Aligned_cols=123 Identities=12% Similarity=0.036 Sum_probs=75.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|+.||+++.+.+....-. ......+.. +.+.||+|... + ..+++ ..+..+|.
T Consensus 4 i~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~---~~~~~---~~~~~~d~ 75 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--F---TAMRD---LYMKNGQG 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCccc--c---hhHHH---HHHhhCCE
Confidence 445578889999988887632110 012233333 35789999531 1 11222 25778999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|..++.++.+ +.+++..+ ..+.|+|||.||+|+... .+...+. +..+.+++.+||+++.+
T Consensus 76 ~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~ 150 (164)
T cd04175 76 FVLVYSITAQSTFND--LQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA---RQWGCAFLETSAKAKIN 150 (164)
T ss_pred EEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH---HHhCCEEEEeeCCCCCC
Confidence 999999987765432 22232222 246799999999999642 2222332 34467899999998876
No 268
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.03 E-value=4e-06 Score=76.01 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=70.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.+-..|+.|||++.+.+...+-. ....+.+ ..+.++||+|... .........++....+..+|
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~~i~~~d 82 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED-YRAIRRLYYRAVESSLRVFD 82 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCccc-chHHHHHHHhhhhEEEEEEE
Confidence 344567888888888888766521 0123455 5678899999321 11111111222222233344
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhC-CCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSV-NVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~-gi~vi~~SA~~~~~ 244 (595)
+++.|+|+..+.......+...+ ..+.|+++|+||+|+............+... ..+++.+||..+.+
T Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 83 IVILVLDVEEILEKQTKEIIHHA---ESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKN 151 (161)
T ss_pred EeeeehhhhhHhHHHHHHHHHhc---ccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCC
Confidence 44444444332211111122221 2267999999999998754333444444443 44788999988766
No 269
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.03 E-value=1.3e-05 Score=84.79 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=51.5
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH----Hhh---------------------------------hhcCeeeEEEeCCCcccC
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD----EFL---------------------------------QWRRELNLLQEEDGLVIT 153 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~----~f~---------------------------------~wrg~~~~L~DT~Gi~~t 153 (595)
|-..||+||||++|+|.+..-. .|. .|+...++++||||++..
T Consensus 3 ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~g 82 (318)
T cd01899 3 LVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPG 82 (318)
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCC
Confidence 4568999999999999976421 011 145567899999998754
Q ss_pred hhhhhHHHHHHHHHHHhhcCeEEEEEeCC
Q psy9995 154 PYEKNLDFWRQLWRVIERSDVIVQIVDAR 182 (595)
Q Consensus 154 ~~ern~e~~rql~~vie~sDvVl~VvDAR 182 (595)
. ++...+-.+....+..||++++|+|+.
T Consensus 83 a-~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 83 A-HEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred c-cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 2 222334466777899999999999996
No 270
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.03 E-value=1.2e-05 Score=77.79 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=71.6
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+.+-..+++||+++.+.+...+-. ...++.+..+.+.||+|- ++-..+|+. .+..+|++|+
T Consensus 19 ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq-----~~~~~~~~~---~~~~a~~iI~ 90 (181)
T PLN00223 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ-----DKIRPLWRH---YFQNTQGLIF 90 (181)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCC-----HHHHHHHHH---HhccCCEEEE
Confidence 3445555555555555555321100 113455677889999993 111122322 4789999999
Q ss_pred EEeCCCCCCCCc--hHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCC-----CeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRC--EDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFNSVN-----VAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~--~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~g-----i~vi~~SA~~~~~ 244 (595)
|+|+.++..+.. ..+..++... -.+.|++||.||+|+..........+++.-.. ..++.+||+++.|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~g 165 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCC
Confidence 999998754321 1122222110 13679999999999865433333344332111 1233579999877
No 271
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.02 E-value=1.3e-05 Score=76.15 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=72.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeC
Q psy9995 112 PRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDA 181 (595)
Q Consensus 112 prRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDA 181 (595)
-..++.||+++.+.+...... ....+.+..+.+.|++|-. ....+|+ ..+..+|++|+|+|+
T Consensus 5 ~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~---~~~~~a~~ii~V~D~ 76 (167)
T cd04161 5 VGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGA-----NFRGIWV---NYYAEAHGLVFVVDS 76 (167)
T ss_pred ECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcH-----HHHHHHH---HHHcCCCEEEEEEEC
Confidence 345677777777776543111 1123456677899999942 1122233 467899999999999
Q ss_pred CCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHh------hCC--CeEEEEecccCC
Q psy9995 182 RNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFN------SVN--VAVAFFSATNIY 243 (595)
Q Consensus 182 R~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~------~~g--i~vi~~SA~~~~ 243 (595)
.++..+. .+..++..+ ..++|++||+||+|+..........+++. +.+ ..++.+||+++.
T Consensus 77 s~~~s~~--~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 77 SDDDRVQ--EVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred CchhHHH--HHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 8875432 223333322 13689999999999965443333444321 112 245568998873
No 272
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.02 E-value=1.2e-06 Score=98.49 Aligned_cols=138 Identities=22% Similarity=0.194 Sum_probs=89.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.++.
T Consensus 349 ~~~~ivG~sGsGKSTL~~ll~g~~-----------------~~~~G~I~~~--g~~i~~-------------~~~~~lr~ 396 (529)
T TIGR02857 349 ERVALVGPSGAGKSTLLNLLLGFV-----------------DPTEGSIAVN--GVPLAD-------------ADADSWRD 396 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCcEEEEC--CEehhh-------------CCHHHHHh
Confidence 468999999999999999999866 3345566777 543322 34566777
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.+| .|+.+...+.+..+..+....++++..+.. .+|-..+|||.++...||.++++
T Consensus 397 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 397 QIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred heEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 7777777667778888777 454322111111111112234455555432 25777899999999999999985
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
.+++.. +|..+.|+..-.
T Consensus 477 ---~~ililDE~ts~lD~~~~~ 495 (529)
T TIGR02857 477 ---APLLLLDEPTAHLDAETEA 495 (529)
T ss_pred ---CCEEEEeCcccccCHHHHH
Confidence 576644 566667765544
No 273
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.02 E-value=3e-05 Score=88.42 Aligned_cols=100 Identities=12% Similarity=0.083 Sum_probs=66.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC------------------eeeEEEeCCCcccChh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR------------------ELNLLQEEDGLVITPY 155 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg------------------~~~~L~DT~Gi~~t~~ 155 (595)
+.+.|-.+|+.||+|+.|.|....-. .+..|.. ..+.|+||||.. .|
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e--~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE--AF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH--hH
Confidence 45677789999999999999754211 1222210 126799999942 11
Q ss_pred hhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC
Q psy9995 156 EKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT 216 (595)
Q Consensus 156 ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~ 216 (595)
.....+.+..+|++++|+|+.+.......+....++ ..+.|+|+|+||+|+.+
T Consensus 83 ------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~--~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 ------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILR--MYKTPFVVAANKIDRIP 135 (590)
T ss_pred ------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHH--HcCCCEEEEEECCCccc
Confidence 111223567899999999998765443333334444 34789999999999974
No 274
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.01 E-value=4e-06 Score=75.97 Aligned_cols=55 Identities=36% Similarity=0.457 Sum_probs=45.3
Q ss_pred EeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc----CCceEEEeCCCCccCC
Q psy9995 327 LVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV----DDELLLCDCPGLVMPS 381 (595)
Q Consensus 327 lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~----~~~~~liDtPGl~~p~ 381 (595)
++|.+|+|||||+|+|++.....++..+++|........ ...+.++||||+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence 589999999999999998876668888999888765443 4589999999987543
No 275
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.01 E-value=4.2e-05 Score=84.67 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=69.3
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCchHHHHHHHHhCCCCc-
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLL-------FRCEDLERYVKEVSPHKR- 204 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~-------~~~~~Le~~lk~v~~~K~- 204 (595)
...+|.+..+.|+||||. .++.+++...+..+|++|+||||..+.. ........++. ..+.+
T Consensus 78 ~~~~~~~~~i~lIDtPGh--------~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~--~~gi~~ 147 (446)
T PTZ00141 78 WKFETPKYYFTIIDAPGH--------RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF--TLGVKQ 147 (446)
T ss_pred EEEccCCeEEEEEECCCh--------HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH--HcCCCe
Confidence 345788999999999993 2567788888999999999999987652 11122223333 23545
Q ss_pred EEEEEeCCCC--CC--HHH----HHHHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 205 NMILLNKADL--LT--RKQ----RCYWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 205 ~ILVlNK~DL--l~--~~~----~~~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
+|+++||+|. +. +.. .....++|...| +++|++|+.++.+.
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni 201 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNM 201 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCc
Confidence 6799999994 22 222 233444454433 46899999998774
No 276
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.01 E-value=1.2e-06 Score=99.55 Aligned_cols=138 Identities=24% Similarity=0.331 Sum_probs=91.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+.+| |..... ++.+.+++
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~gl~-----------------~p~~G~I~i~--g~~i~~-------------~~~~~~~~ 417 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTRFY-----------------DIDEGEILLD--GHDLRD-------------YTLASLRN 417 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-----------------CCCCceEEEC--CEEhhh-------------cCHHHHHh
Confidence 468999999999999999999865 3445667777 654333 45667778
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCC-CCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMI-TQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~-~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
.+..+.+-...++.++.+| .|+.+. ..+.+.+........+++++.++.+ +|...+|||.+....||.+++
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 8888888788888888887 455421 1111111111122345555555433 566689999999999999998
Q ss_pred HHHhCCceee-cCCCCCChhhhh
Q psy9995 474 DFVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 474 D~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+ .+++-. +|..+.|++.-.
T Consensus 498 ~---~~ililDEptsaLD~~t~~ 517 (582)
T PRK11176 498 D---SPILILDEATSALDTESER 517 (582)
T ss_pred C---CCEEEEECccccCCHHHHH
Confidence 4 477654 566667765444
No 277
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.01 E-value=7.3e-06 Score=77.63 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=41.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|++||.||||||||+|++++...... ..+.|.+.+...+.++. .+.++||||..
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 37899999999999999999997653322 34456555544444442 57899999954
No 278
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.00 E-value=1.1e-06 Score=110.12 Aligned_cols=136 Identities=20% Similarity=0.175 Sum_probs=91.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|||||.+|+|||||+++|++-. ....+-+++| |+.... ++.+.+|.
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~-----------------~~~~G~I~Id--G~dI~~-------------i~~~~LR~ 1360 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRIN-----------------ESAEGEIIID--GLNIAK-------------IGLHDLRF 1360 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc-----------------cCCCCeEEEC--CEEccc-------------cCHHHHHh
Confidence 479999999999999999999865 4456778899 877655 56788898
Q ss_pred hhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKDF 475 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD~ 475 (595)
.+..+.+-...++.++.+|.-........+.....+....++++..+..+ +|...++||.++...||++|+
T Consensus 1361 ~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr-- 1438 (1522)
T TIGR00957 1361 KITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR-- 1438 (1522)
T ss_pred cCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc--
Confidence 88888888888888877763111001110111111112234444444322 667789999999999999996
Q ss_pred HhCCceee-cCCCCCChhh
Q psy9995 476 VNGHLLYC-QAPPGVPQEK 493 (595)
Q Consensus 476 ~~GKL~~~-~~PP~~~~~~ 493 (595)
+.+++-. +|.-+.|.+.
T Consensus 1439 -~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1439 -KTKILVLDEATAAVDLET 1456 (1522)
T ss_pred -CCCEEEEECCcccCCHHH
Confidence 5787755 4555566543
No 279
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.00 E-value=4.2e-06 Score=87.19 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=90.4
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccCh-hhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITP-YEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~-~ern~e~~rql~~vie~sDvV 175 (595)
.+-.-|++|||++++.|+..+-+ ..+++.|-.++++|+||++..- .-++. =+|+..++..||+|
T Consensus 67 ~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr--G~~vlsv~R~ADlI 144 (365)
T COG1163 67 ALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR--GRQVLSVARNADLI 144 (365)
T ss_pred EEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC--cceeeeeeccCCEE
Confidence 34456999999999999987665 5678999999999999998742 22321 25667788999999
Q ss_pred EEEEeCCCCCCCC------------------------------------------c-hHHHHHHHH--------------
Q psy9995 176 VQIVDARNPLLFR------------------------------------------C-EDLERYVKE-------------- 198 (595)
Q Consensus 176 l~VvDAR~Pl~~~------------------------------------------~-~~Le~~lk~-------------- 198 (595)
++|+|+..+.... + ..+..++++
T Consensus 145 iiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dv 224 (365)
T COG1163 145 IIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDV 224 (365)
T ss_pred EEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCC
Confidence 9999998665310 1 111122221
Q ss_pred --------hC---CCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 199 --------VS---PHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 199 --------v~---~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+. .-+|.|+|+||+|+.+.+......+.+ +++++||..+.+
T Consensus 225 TlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~-----~~v~isa~~~~n 276 (365)
T COG1163 225 TLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP-----NSVPISAKKGIN 276 (365)
T ss_pred cHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc-----ceEEEecccCCC
Confidence 11 137899999999999977665544433 789999988655
No 280
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.00 E-value=1.3e-05 Score=91.28 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=84.1
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCe-eeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRE-LNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~-~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
....+.|=..++.||+|+++.|....-. ....|.+. .+.|+||||.. .|. ....+.+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe--~F~------~~r~rga~ 157 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE--AFT------SMRARGAK 157 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCc--chh------hHHHhhhc
Confidence 3456777888899999999999753211 23456444 78899999943 121 11224678
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC--HHHHHHHHHHH----hhCC--CeEEEEecccC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT--RKQRCYWTKYF----NSVN--VAVAFFSATNI 242 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~--~~~~~~w~~~~----~~~g--i~vi~~SA~~~ 242 (595)
.+|++++|+|+.++...........++ ..+.|+|+++||+|+.. .+....+...+ ...+ ..++.+||+++
T Consensus 158 ~aDiaILVVda~dgv~~qT~e~i~~~~--~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 158 VTDIVVLVVAADDGVMPQTIEAISHAK--AANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred cCCEEEEEEECCCCCCHhHHHHHHHHH--HcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 899999999998765433333333333 34689999999999953 33333332211 0111 36889999998
Q ss_pred CCC
Q psy9995 243 YDD 245 (595)
Q Consensus 243 ~~~ 245 (595)
.+.
T Consensus 236 eGI 238 (587)
T TIGR00487 236 DGI 238 (587)
T ss_pred CCh
Confidence 873
No 281
>KOG1489|consensus
Probab=98.00 E-value=3.3e-06 Score=87.57 Aligned_cols=57 Identities=37% Similarity=0.556 Sum_probs=47.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC--CceEEEeCCCCccCC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD--DELLLCDCPGLVMPS 381 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~--~~~~liDtPGl~~p~ 381 (595)
.||+||+||+|||||+|+|.+.+ -.|+..|.||-+.+ ++..+ ..+.+-|-|||+...
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccc
Confidence 58999999999999999999876 59999999998754 34433 358899999999554
No 282
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.99 E-value=1.1e-05 Score=77.25 Aligned_cols=127 Identities=14% Similarity=0.087 Sum_probs=71.4
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+.+-..|+.||+++.+.+...+-. ....+....+.+.||+|... ...+|+ ..+..+|++|+
T Consensus 15 ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~-----~~~~~~---~~~~~ad~ii~ 86 (175)
T smart00177 15 RILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDK-----IRPLWR---HYYTNTQGLIF 86 (175)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChh-----hHHHHH---HHhCCCCEEEE
Confidence 4555556666666666665321100 01234556778999999521 111222 24789999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh--C---CCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV--S---PHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v--~---~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
|+|+.+|.++. ....++..+ . .+.|++||.||+||.......+..+.+. .....++.+||+++.+
T Consensus 87 v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (175)
T smart00177 87 VVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDG 161 (175)
T ss_pred EEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCC
Confidence 99998875432 222222222 1 2478999999999864321222222221 1122355689999876
No 283
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.99 E-value=2.5e-05 Score=82.09 Aligned_cols=134 Identities=22% Similarity=0.230 Sum_probs=87.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----Hhhh----------hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----EFLQ----------WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----~f~~----------wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-+-.-||+||||+.+.+....=. -|.. -.+..|.+-|-|||++---+-..... +..+-|+++-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~-~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL-RFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccH-HHHHHHHhhh
Confidence 3446678999999999999875433 1221 23455788899999985433221111 2234579999
Q ss_pred eEEEEEeCCCCCCCC---------chHHHHHHHHhCCCCcEEEEEeCCC-CCCHHHHHHHHHHHhhC-CCeE-EEEeccc
Q psy9995 174 VIVQIVDARNPLLFR---------CEDLERYVKEVSPHKRNMILLNKAD-LLTRKQRCYWTKYFNSV-NVAV-AFFSATN 241 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~---------~~~Le~~lk~v~~~K~~ILVlNK~D-Ll~~~~~~~w~~~~~~~-gi~v-i~~SA~~ 241 (595)
++++|||.. |...+ ..+|+.|-..+ .+||.|||+||+| ..+.+..+...+++.+. +..+ +++||.+
T Consensus 240 vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L-~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t 317 (369)
T COG0536 240 VLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKL-AEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT 317 (369)
T ss_pred eeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHh-ccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence 999999986 22211 12233332221 3799999999999 56777788888888654 3332 3399998
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 318 ~~g 320 (369)
T COG0536 318 REG 320 (369)
T ss_pred ccC
Confidence 776
No 284
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.98 E-value=7e-06 Score=88.11 Aligned_cols=58 Identities=29% Similarity=0.311 Sum_probs=46.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC------------------CceEEEeCCCCccC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD------------------DELLLCDCPGLVMP 380 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~------------------~~~~liDtPGl~~p 380 (595)
+++||||+||||||||+|+|++.....+++.|.+|..... +.++ ..+.++|.||++..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 6899999999999999999998873388888999877432 3322 35899999999854
No 285
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.98 E-value=8.5e-06 Score=76.41 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=39.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.||||||||+|+|++.. ......|..+..+ ..+..+. .+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 3689999999999999999999765 2333334443333 3344433 47899999975
No 286
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.97 E-value=1.9e-05 Score=76.52 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=72.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+-+-..|+.||+++.+.+...+-. ....+.+..+.+.||+|.. +...+|+ ..+..+|++|+
T Consensus 19 kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~---~~~~~ad~iI~ 90 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQD-----KLRPLWR---HYYQNTNGLIF 90 (182)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCH-----hHHHHHH---HHhcCCCEEEE
Confidence 4555566666666666666422110 1123456678899999952 1112233 35789999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHHhh-----CCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYFNS-----VNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-----~gi~vi~~SA~~~~~ 244 (595)
|+|+.++.++.. ...++..+ . ...|+|||.||+|+...........++.. ..+.++.+||+++.+
T Consensus 91 v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~g 165 (182)
T PTZ00133 91 VVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQG 165 (182)
T ss_pred EEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCC
Confidence 999987654321 22222222 1 35789999999998643222233333311 112334579998876
No 287
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.97 E-value=1.2e-06 Score=99.73 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=88.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ..+.+-+.+| |..... ++.+.+|.
T Consensus 367 ~~~aivG~sGsGKSTL~~ll~g~~-----------------~p~~G~I~i~--g~~i~~-------------~~~~~~r~ 414 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQLLTRAW-----------------DPQQGEILLN--GQPIAD-------------YSEAALRQ 414 (574)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCceEEEC--CEEhhh-------------CCHHHHHh
Confidence 468999999999999999999865 3345666777 654333 45667777
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.+| .|+.+.....+.....+....++++.. .. .+|...+|||.++...||.+++
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~- 492 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLH- 492 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhc-
Confidence 7777777777778888777 355421111110111111223344433 22 1577789999999999999997
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+.+++.. +|-.+.|+..-.
T Consensus 493 --~~~ililDE~ts~lD~~t~~ 512 (574)
T PRK11160 493 --DAPLLLLDEPTEGLDAETER 512 (574)
T ss_pred --CCCEEEEeCCcccCCHHHHH
Confidence 5677644 566667765444
No 288
>PTZ00243 ABC transporter; Provisional
Probab=97.97 E-value=1.4e-06 Score=109.33 Aligned_cols=136 Identities=17% Similarity=0.133 Sum_probs=88.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|||||.+|+|||||+++|++-. ....+-+++| |..... +++..+|.
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl~-----------------~p~~G~I~ID--G~di~~-------------i~l~~LR~ 1384 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRMV-----------------EVCGGEIRVN--GREIGA-------------YGLRELRR 1384 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------------CCCCcEEEEC--CEEccc-------------CCHHHHHh
Confidence 479999999999999999999865 4456778889 876554 56778888
Q ss_pred hhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKDF 475 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD~ 475 (595)
.+..|.+-...++.++.+|.-......+.+...+.+....++++..+.. .+|...++||.++...||+||++
T Consensus 1385 ~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~- 1463 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK- 1463 (1560)
T ss_pred cceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC-
Confidence 8888887777888887776410000010010111111223444444322 26777899999999999999974
Q ss_pred HhCCceee-cCCCCCChh
Q psy9995 476 VNGHLLYC-QAPPGVPQE 492 (595)
Q Consensus 476 ~~GKL~~~-~~PP~~~~~ 492 (595)
+-+++-. ++--..|.+
T Consensus 1464 -~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1464 -GSGFILMDEATANIDPA 1480 (1560)
T ss_pred -CCCEEEEeCCCccCCHH
Confidence 2366544 444445543
No 289
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.97 E-value=4.7e-06 Score=89.87 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=49.4
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCc----cee-----------EecCCCC---CceeeEE-------EEcC----CceE
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNA----KKV-----------SVSATPG---KTKHFQT-------LFVD----DELL 370 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~----~kv-----------sVs~tPG---~TKh~Qt-------i~~~----~~~~ 370 (595)
.+.+.||+||..|+|||||||++++. ... -+++.|| +|.+... +.+. ..+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 56799999999999999999999987 544 6899999 6665322 3333 5799
Q ss_pred EEeCCCCccCC
Q psy9995 371 LCDCPGLVMPS 381 (595)
Q Consensus 371 liDtPGl~~p~ 381 (595)
|+||+|+..+.
T Consensus 95 lIDcvG~~v~G 105 (492)
T TIGR02836 95 LVDCVGYTVKG 105 (492)
T ss_pred EEECCCcccCC
Confidence 99999998654
No 290
>PLN03232 ABC transporter C family member; Provisional
Probab=97.97 E-value=1.3e-06 Score=109.30 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=90.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|||||.+|+|||||++.|+|-. ....+-+++| |..... ++.+.+|.
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~-----------------~p~~G~I~Id--G~di~~-------------i~~~~lR~ 1310 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIV-----------------ELEKGRIMID--DCDVAK-------------FGLTDLRR 1310 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------------cCCCceEEEC--CEEhhh-------------CCHHHHHh
Confidence 479999999999999999999865 4456778899 865444 56778888
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..|.+-...++.++.+|. ++-. ....+..+..+.....+++..+.. .+|...+|||.++...||++|+
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~~-~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr- 1388 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFSE-HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR- 1388 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCCC-CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh-
Confidence 88888877778888877773 2211 110010111122234455554432 2677789999999999999997
Q ss_pred HHhCCceee-cCCCCCChh
Q psy9995 475 FVNGHLLYC-QAPPGVPQE 492 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~ 492 (595)
+.+++-. ++--..|.+
T Consensus 1389 --~~~ILILDEATSaLD~~ 1405 (1495)
T PLN03232 1389 --RSKILVLDEATASVDVR 1405 (1495)
T ss_pred --CCCEEEEECCcccCCHH
Confidence 4677655 455556654
No 291
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.97 E-value=1.1e-05 Score=76.19 Aligned_cols=126 Identities=13% Similarity=0.004 Sum_probs=75.0
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
|-..|+.|||++.+.+....-. ....+.+. .+.+.||+|... +. .++ ...+..+|++|
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~---~~~~~~~d~~i 74 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQED--YD---RLR---PLSYPDTDVFL 74 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcc--cc---hhc---hhhcCCCCEEE
Confidence 4457888999998887653311 01122333 356789999531 11 111 12567899999
Q ss_pred EEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHH-HH-------------HHHHHHhhCCC-eEEEEec
Q psy9995 177 QIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQ-RC-------------YWTKYFNSVNV-AVAFFSA 239 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~-~~-------------~w~~~~~~~gi-~vi~~SA 239 (595)
+|+|..++.++..- .+...+....++.|+|||.||+|+.+... .. .-..+.+..+. .++.+||
T Consensus 75 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 75 ICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 99999887655321 11222322245789999999999965321 10 11112233454 7888999
Q ss_pred ccCCC
Q psy9995 240 TNIYD 244 (595)
Q Consensus 240 ~~~~~ 244 (595)
+++.+
T Consensus 155 ~~~~~ 159 (174)
T smart00174 155 LTQEG 159 (174)
T ss_pred CCCCC
Confidence 98876
No 292
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.96 E-value=1.9e-05 Score=72.83 Aligned_cols=128 Identities=13% Similarity=0.003 Sum_probs=78.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH---------H---Hhhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER---------D---EFLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er---------~---~f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|+.||+++.+.+..... . ....+. ...+.+.|++|... +.......+..+|+
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~~~ 73 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE--------FSAMRDLYIRQGDG 73 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHHHhcCCE
Confidence 34557889999999999875421 1 111222 24567899999432 11223346788999
Q ss_pred EEEEEeCCCCCCCCc-hHHHHHHHHhC--CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRC-EDLERYVKEVS--PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~-~~Le~~lk~v~--~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|..++.+... ..+...+.... ...|+++|+||+|+..... ......+....+.+++.+|++.+.+
T Consensus 74 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 148 (160)
T cd00876 74 FILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNIN 148 (160)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCC
Confidence 999999987654321 11222222222 3689999999999976321 1222333444567889999988765
No 293
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.96 E-value=3.3e-05 Score=85.49 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=71.4
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CchHHHHHHHHh-CCCC-cEE
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLF----RCEDLERYVKEV-SPHK-RNM 206 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~----~~~~Le~~lk~v-~~~K-~~I 206 (595)
...+|.+..+.|+||||- .++.+.+...+..+|.+|+|+|+...... ......+.+..+ ..+. ++|
T Consensus 78 ~~~~~~~~~i~liDtPGh--------~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 78 WKFETTKYYCTVIDAPGH--------RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred EEecCCCEEEEEEECCCH--------HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 456789999999999993 35677777888999999999999874211 112333333211 2345 568
Q ss_pred EEEeCCCCCCH--------HHHHHHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 207 ILLNKADLLTR--------KQRCYWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 207 LVlNK~DLl~~--------~~~~~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
+++||+|+.+. +..++...++.+.| ++++++||.++.+.
T Consensus 150 V~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni 201 (447)
T PLN00043 150 CCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNM 201 (447)
T ss_pred EEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccc
Confidence 89999998732 11334555566555 46899999998763
No 294
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.96 E-value=7.9e-06 Score=76.09 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=40.2
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcC--CceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVD--DELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~--~~~~liDtPGl~ 378 (595)
+|+++|.+|||||||+|+|.+...+...++.|.+.. .+..+ -.+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEeCCceEEEEEECCCCH
Confidence 479999999999999999998876666666665432 33332 368899999974
No 295
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.95 E-value=1.1e-05 Score=76.24 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=40.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.||||||||+|++.+..- ....++.|.+.+...+..+. .+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 37899999999999999999997542 12234445444444454443 46899999965
No 296
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.94 E-value=5.5e-06 Score=80.60 Aligned_cols=56 Identities=30% Similarity=0.512 Sum_probs=40.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCc------ceeEecCCCCCceeeEE--EEc---------------CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNA------KKVSVSATPGKTKHFQT--LFV---------------DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~------~kvsVs~tPG~TKh~Qt--i~~---------------~~~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|++. ....++..+|+|.+... +.+ ...+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 47999999999999999999973 22233445788877532 221 3468999999973
No 297
>PLN03110 Rab GTPase; Provisional
Probab=97.94 E-value=3e-05 Score=77.22 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=80.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..++.||+++.+.|...+-. .| ..+.+ ..+.|.||+|.. + +.......+..
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~-----~---~~~~~~~~~~~ 84 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE-----R---YRAITSAYYRG 84 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH-----H---HHHHHHHHhCC
Confidence 35667788999999999988754321 11 12223 245677999832 1 11222346778
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
+|.+|+|+|..++.++. .+..++..+ ..+.|+++|.||+||... +....+.. ..++.++.+||+++
T Consensus 85 ~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~---~~~~~~~e~SA~~g 159 (216)
T PLN03110 85 AVGALLVYDITKRQTFD--NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE---KEGLSFLETSALEA 159 (216)
T ss_pred CCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHH---HcCCEEEEEeCCCC
Confidence 99999999998876643 344444332 236789999999998542 33333332 34778999999998
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 160 ~~ 161 (216)
T PLN03110 160 TN 161 (216)
T ss_pred CC
Confidence 76
No 298
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.93 E-value=3.3e-05 Score=72.60 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=79.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------H----hhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------E----FLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~----f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+.+-..|+.|||++.+.+....-. . ...|.+.. +.+.|++|.. .+.......+..+
T Consensus 9 ~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 80 (169)
T cd04114 9 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE--------RFRSITQSYYRSA 80 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH--------HHHHHHHHHhcCC
Confidence 4556778999999999998732211 0 13455644 4567999842 1223334578899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHH---HHh-CCCCcEEEEEeCCCCCCHHHH-HHHHHHHhh-CCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYV---KEV-SPHKRNMILLNKADLLTRKQR-CYWTKYFNS-VNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~l---k~v-~~~K~~ILVlNK~DLl~~~~~-~~w~~~~~~-~gi~vi~~SA~~~~~ 244 (595)
|++++|+|++++.++. .+..++ +.. ..+.|.|+|.||+|+.+..+. ....+.+.. ....++.+||+++.+
T Consensus 81 d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 81 NALILTYDITCEESFR--CLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN 156 (169)
T ss_pred CEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999998765432 222333 322 235788999999999754321 222333322 245788999998866
No 299
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.93 E-value=3.2e-05 Score=73.36 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=76.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHH-HHHHHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQ-LWRVIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rq-l~~vie~s 172 (595)
+.|-..|+.||+++.+.+...+-. ....+.+ ..+.+.||+|.. .+... ....+..+
T Consensus 5 i~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~~~ 76 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE--------RFRKSMVQHYYRNV 76 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH--------HHHHhhHHHhhcCC
Confidence 445678889999999888653311 0122444 346688999842 11111 22356789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHH-HHHH-HHHhhCCCeEEEEecccCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQR-CYWT-KYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~-~~w~-~~~~~~gi~vi~~SA~~~~ 243 (595)
|.+++|+|+.+|.++.. +..++..+ ..+.|+|||.||+|+....+. .... ++....+..++.+||+++.
T Consensus 77 d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (170)
T cd04115 77 HAVVFVYDVTNMASFHS--LPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPS 152 (170)
T ss_pred CEEEEEEECCCHHHHHh--HHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCc
Confidence 99999999998876532 33444322 245799999999998643221 1111 2223335678889998854
No 300
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.93 E-value=2.5e-05 Score=74.74 Aligned_cols=125 Identities=12% Similarity=0.039 Sum_probs=78.2
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------H---hhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------E---FLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~---f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-..+++||+++...+...+=. . ...+.+. .+.|.||+|... -..+|+. .+..+|.
T Consensus 5 i~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~l~~~---~~~~~d~ 76 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAE-----FTAMRDQ---YMRCGEG 76 (172)
T ss_pred EEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchh-----hHHHhHH---HhhcCCE
Confidence 445567788888887777643211 0 1234443 356789999521 1223333 4668999
Q ss_pred EEEEEeCCCCCCCCchH-HHHHHHHh--CCCCcEEEEEeCCCCCC-----HHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCED-LERYVKEV--SPHKRNMILLNKADLLT-----RKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~-Le~~lk~v--~~~K~~ILVlNK~DLl~-----~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+|+|..++.++.... +...+... ..+.|+|+|.||+|+.. .++...|. +..+..++.+||+++.+
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a---~~~~~~~~e~Sa~~~~~ 151 (172)
T cd04141 77 FIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLA---REFNCPFFETSAALRHY 151 (172)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHH---HHhCCEEEEEecCCCCC
Confidence 99999999888764422 22233332 24689999999999853 23333343 34477888999998876
No 301
>PLN03108 Rab family protein; Provisional
Probab=97.93 E-value=2.9e-05 Score=76.94 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=79.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|...+-.. ...+.+. .+.+.||+|... +.......+..+
T Consensus 8 kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~--------~~~~~~~~~~~a 79 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES--------FRSITRSYYRGA 79 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHH--------HHHHHHHHhccC
Confidence 35566788899999999887543210 1234343 355889998421 111223456789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|.+|+|+|+.++.++.. +..++..+ ....|+|+|.||+||..... ...-.++.+..+..++.+||+++.+
T Consensus 80 d~~vlv~D~~~~~s~~~--l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 155 (210)
T PLN03108 80 AGALLVYDITRRETFNH--LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (210)
T ss_pred CEEEEEEECCcHHHHHH--HHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999988765432 33333222 24678999999999964311 1122233344577889999988766
No 302
>PTZ00369 Ras-like protein; Provisional
Probab=97.92 E-value=1.7e-05 Score=76.86 Aligned_cols=127 Identities=12% Similarity=0.066 Sum_probs=76.6
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------Hhh---hhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------EFL---QWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~f~---~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.|-..|+.||+++.+.+...+-. .+. ...+ ..+.+.||+|... + ..+|. ..+..+|
T Consensus 7 Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~---~~l~~---~~~~~~d 78 (189)
T PTZ00369 7 KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE--Y---SAMRD---QYMRTGQ 78 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc--c---hhhHH---HHhhcCC
Confidence 4556678888888888887753211 110 1122 3356799999532 1 11222 2567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++. .+..++..+ ..+.|+|||.||+|+..... ......+....+.+++.+||+++.+
T Consensus 79 ~iilv~D~s~~~s~~--~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~g 154 (189)
T PTZ00369 79 GFLCVYSITSRSSFE--EIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVN 154 (189)
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence 999999998876542 233333322 23568999999999854211 1112222233467889999999876
No 303
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.92 E-value=3.8e-05 Score=86.60 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=54.9
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
..+|.+..+.|+||||.. ++....++.+..+|.+|+|+|+.+........+.+++. ..+.|+|+++||+|
T Consensus 73 ~~~~~~~~inliDTPG~~--------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~--~~~iPiiv~iNK~D 142 (526)
T PRK00741 73 QFPYRDCLINLLDTPGHE--------DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCR--LRDTPIFTFINKLD 142 (526)
T ss_pred EEEECCEEEEEEECCCch--------hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHH--hcCCCEEEEEECCc
Confidence 367999999999999953 23445677889999999999998765433333444443 35789999999999
Q ss_pred CCC
Q psy9995 214 LLT 216 (595)
Q Consensus 214 Ll~ 216 (595)
+..
T Consensus 143 ~~~ 145 (526)
T PRK00741 143 RDG 145 (526)
T ss_pred ccc
Confidence 864
No 304
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.91 E-value=2.3e-05 Score=74.40 Aligned_cols=122 Identities=15% Similarity=0.109 Sum_probs=71.8
Q ss_pred CCCCCCCcCCCHHHHHHHHH-H----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEe
Q psy9995 112 PRRPKWDKNTTAEQLQAMER-D----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVD 180 (595)
Q Consensus 112 prRPnw~kst~~n~L~~~Er-~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvD 180 (595)
-..++.||+++.+.+....- . ....|.+..+.+.||+|-.. + ..+|+ ..+..+|.+|+|+|
T Consensus 5 vG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~--~---~~~~~---~~~~~ad~ii~V~D 76 (164)
T cd04162 5 LGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQN--L---RKYWK---RYLSGSQGLIFVVD 76 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcc--h---hHHHH---HHHhhCCEEEEEEE
Confidence 34566666666666654310 0 11334556677889998421 1 12233 36889999999999
Q ss_pred CCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHHHHHHH-----H-hhCCCeEEEEecccCC
Q psy9995 181 ARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQRCYWTKY-----F-NSVNVAVAFFSATNIY 243 (595)
Q Consensus 181 AR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~~w~~~-----~-~~~gi~vi~~SA~~~~ 243 (595)
+.++..+. .+..++.++ ..+.|+++|.||+|+...........+ + .+.+..++.+||++..
T Consensus 77 ~t~~~s~~--~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (164)
T cd04162 77 SADSERLP--LARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDG 146 (164)
T ss_pred CCCHHHHH--HHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCC
Confidence 98876432 222223322 257899999999998654333322222 2 2335566778887643
No 305
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.91 E-value=4.6e-05 Score=77.85 Aligned_cols=127 Identities=18% Similarity=0.082 Sum_probs=74.2
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH--------H----hhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD--------E----FLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~--------~----f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
.|-..+++||+++.+.+...+-. . ...+.+ ..+.|.||+|... +. . ++. ..+..+|++
T Consensus 4 vvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~--~~---~-~~~--~~~~~ad~i 75 (247)
T cd04143 4 VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP--FP---A-MRR--LSILTGDVF 75 (247)
T ss_pred EEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChh--hh---H-HHH--HHhccCCEE
Confidence 44567888888888888532211 1 122334 3456889999532 21 1 122 245689999
Q ss_pred EEEEeCCCCCCCCc-hHHHHHHHHh----------CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhh-CCCeEEEEeccc
Q psy9995 176 VQIVDARNPLLFRC-EDLERYVKEV----------SPHKRNMILLNKADLLTRK--QRCYWTKYFNS-VNVAVAFFSATN 241 (595)
Q Consensus 176 l~VvDAR~Pl~~~~-~~Le~~lk~v----------~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~-~gi~vi~~SA~~ 241 (595)
|+|+|..++.++.. ..+...+.+. ..+.|+|||.||+|+.... ......+++.. .+..++.+||++
T Consensus 76 IlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAkt 155 (247)
T cd04143 76 ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKK 155 (247)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCC
Confidence 99999988765432 1122222211 1367999999999996421 22233333322 246789999988
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 156 g~g 158 (247)
T cd04143 156 NSN 158 (247)
T ss_pred CCC
Confidence 765
No 306
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.90 E-value=1.3e-05 Score=76.63 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=42.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..+|+++|.+|||||||++.|+....+...++.|.+.+ .+.. +..+.++||||..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCeEEEEEECCCCH
Confidence 36899999999999999999987666666666665543 3333 4578999999974
No 307
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.90 E-value=1.3e-05 Score=74.53 Aligned_cols=54 Identities=24% Similarity=0.180 Sum_probs=39.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcc--eeEecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK--KVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~--kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
+|++||.+|||||||++.|.+.. ...+.+|.|.+.+.-. .-+-.+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE-KGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE-ECCEEEEEEECCCCH
Confidence 37899999999999999999863 2345677775543211 123457899999975
No 308
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.90 E-value=8.3e-06 Score=77.34 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=32.9
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
+|+++|.||||||||+|+|.+...+. ..|.. +..... -++||||....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-----~~~~~---v~~~~~-~~iDtpG~~~~ 50 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-----RKTQA---VEFNDK-GDIDTPGEYFS 50 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-----ccceE---EEECCC-CcccCCccccC
Confidence 69999999999999999999865321 12222 222221 26999998644
No 309
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.90 E-value=1.3e-05 Score=74.65 Aligned_cols=55 Identities=29% Similarity=0.309 Sum_probs=37.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee--eEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH--FQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh--~Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.||||||||+|+|.+... .....|..+-. ...+.++. .+.++||||..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999997652 22222333322 23344433 56799999963
No 310
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.89 E-value=7.4e-06 Score=77.94 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=39.3
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEec---------------CCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVS---------------ATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs---------------~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
+|+++|.+|+|||||+|+|++....... ..+|.|.+.....+ ...+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 4899999999999999999876533221 23456666443332 4568999999975
No 311
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.89 E-value=2.7e-06 Score=96.97 Aligned_cols=138 Identities=22% Similarity=0.223 Sum_probs=86.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+++++|.+|+|||||++.|+|.. ....+-+.+| |..... ++.+.+++
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl~-----------------~p~~G~I~i~--g~~i~~-------------~~~~~~r~ 409 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRVF-----------------DPQSGRILID--GTDIRT-------------VTRASLRR 409 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc-----------------CCCCCEEEEC--CEEhhh-------------CCHHHHHh
Confidence 358999999999999999999866 3344556666 543222 44566777
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.+| .|+.+...+.+..........++++..+.. .+|-..+|||.++...||.+++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~- 488 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK- 488 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc-
Confidence 7777777777777777777 454321111000000011123344443322 2566789999999999999988
Q ss_pred HHhCCce-eecCCCCCChhhhh
Q psy9995 475 FVNGHLL-YCQAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~-~~~~PP~~~~~~f~ 495 (595)
+.+++ .-+|-.+.|+..-.
T Consensus 489 --~~~iliLDEpts~LD~~t~~ 508 (588)
T PRK13657 489 --DPPILILDEATSALDVETEA 508 (588)
T ss_pred --CCCEEEEeCCccCCCHHHHH
Confidence 55665 44555667765544
No 312
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.89 E-value=3e-06 Score=98.54 Aligned_cols=138 Identities=19% Similarity=0.155 Sum_probs=90.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ..+.+-+++| |..... ++.+.+|.
T Consensus 484 ~~vaivG~sGsGKSTL~~ll~g~~-----------------~p~~G~I~id--g~~i~~-------------~~~~~~r~ 531 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKLLQRLY-----------------TPQHGQVLVD--GVDLAI-------------ADPAWLRR 531 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCceEEEC--CEehhh-------------CCHHHHHH
Confidence 468999999999999999999976 3455677888 765443 45566777
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.+| .++.+.....+.....+....++++..++. ..|...+|||.+....||.+++
T Consensus 532 ~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~- 610 (694)
T TIGR01846 532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG- 610 (694)
T ss_pred hCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh-
Confidence 7777766666777777777 343321111000111111234556555533 2577789999999999999986
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+-+++.. +|--+.|+..-.
T Consensus 611 --~~~ililDEpts~LD~~~~~ 630 (694)
T TIGR01846 611 --NPRILIFDEATSALDYESEA 630 (694)
T ss_pred --CCCEEEEECCCcCCCHHHHH
Confidence 4577654 555567766554
No 313
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.88 E-value=1.5e-05 Score=74.18 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=37.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
++|++||.||||||||+|+|++..-. ...++.|.+.....+.++ -.+.++||||..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 47999999999999999999986532 122233322222233332 357899999963
No 314
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.88 E-value=2e-05 Score=73.72 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=75.1
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------H----hhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------E----FLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------~----f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-..|+.||+++.+.+...+-. . .....+. .+.|.||+|... +. .+|.. .+..+|.
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~---~~~~~---~~~~ad~ 75 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ--FA---SMRDL---YIKNGQG 75 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCccc--cc---chHHH---HHhhCCE
Confidence 445678888888888777643211 0 1112232 345789999421 11 12222 4678999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+|+|..++.++. .+..++..+ ..+.|++||.||+|+.+.... .....+....+.+++.+||+++.+
T Consensus 76 ~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd04176 76 FIVVYSLVNQQTFQ--DIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTM 150 (163)
T ss_pred EEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 99999998876543 233333222 146899999999998643211 111122223367888999998876
No 315
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.88 E-value=2.8e-05 Score=79.66 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=78.6
Q ss_pred hcCCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh--hhhHHHHHHHHH
Q psy9995 104 EKRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY--EKNLDFWRQLWR 167 (595)
Q Consensus 104 ~~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~--ern~e~~rql~~ 167 (595)
...-.+-+-.+++.|||++.|.|.+.... ....|.+..+.|+||||+..+.+ ..+......+++
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 35566778899999999999999987542 23346778889999999987643 233445556666
Q ss_pred HHh--hcCeEEEEEeCCCC-CCCCchHHHHHHHHhCC---CCcEEEEEeCCCCCCHH
Q psy9995 168 VIE--RSDVIVQIVDARNP-LLFRCEDLERYVKEVSP---HKRNMILLNKADLLTRK 218 (595)
Q Consensus 168 vie--~sDvVl~VvDAR~P-l~~~~~~Le~~lk~v~~---~K~~ILVlNK~DLl~~~ 218 (595)
.++ ..|+|++|...... ....+..+.+.+.+.-+ -+++|+|+||+|.+++.
T Consensus 109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 665 57899998755432 22233345555554311 25799999999998653
No 316
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.88 E-value=1.1e-05 Score=92.26 Aligned_cols=49 Identities=37% Similarity=0.514 Sum_probs=41.7
Q ss_pred ecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CCceEEEeCCCCc
Q psy9995 329 GYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DDELLLCDCPGLV 378 (595)
Q Consensus 329 G~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~~~~liDtPGl~ 378 (595)
|.||||||||+|+|++.. +.+++.||+|.+.... .. +..+.++||||..
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~ 52 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIY 52 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCcc
Confidence 899999999999999876 6899999999987643 22 4568999999986
No 317
>KOG1491|consensus
Probab=97.87 E-value=1.1e-05 Score=84.31 Aligned_cols=60 Identities=37% Similarity=0.447 Sum_probs=47.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EE------------------cCCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LF------------------VDDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~------------------~~~~~~liDtPGl~~p 380 (595)
..+++||||.|||||||++|+|+... +.+.+.|.+|-+... +. ++..+.++|..|++..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSK-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCC-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 35799999999999999999999766 559999999977322 11 2346889999999955
Q ss_pred C
Q psy9995 381 S 381 (595)
Q Consensus 381 ~ 381 (595)
.
T Consensus 98 A 98 (391)
T KOG1491|consen 98 A 98 (391)
T ss_pred c
Confidence 3
No 318
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.87 E-value=1.3e-05 Score=74.53 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=39.4
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
+|+++|.+|||||||+|++++........+.|.+.+. +.. ...+.++||||..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~ 54 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQD 54 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCCh
Confidence 4899999999999999999988744444555554432 222 4578999999975
No 319
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.86 E-value=4.7e-05 Score=71.83 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=76.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------H----hhhhcCeee--EEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------E----FLQWRRELN--LLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~----f~~wrg~~~--~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+.|-..|+.||+++.+.+...+-. . ...+.+..+ .+.||+|.. +-..++. ..+..+
T Consensus 7 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~---~~~~~~ 78 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE-----RFRSLRT---PFYRGS 78 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH-----HHHHhHH---HHhcCC
Confidence 4556678999999999988743211 0 112344443 466999932 1112222 356789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh--------CCCCcEEEEEeCCCCCCHH-HHHHHHHHHhhCC-CeEEEEecccC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV--------SPHKRNMILLNKADLLTRK-QRCYWTKYFNSVN-VAVAFFSATNI 242 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v--------~~~K~~ILVlNK~DLl~~~-~~~~w~~~~~~~g-i~vi~~SA~~~ 242 (595)
|++++|+|..++.++.. +..++.++ ..+.|++||.||+|+.... ......++.++.+ ..++.+||+++
T Consensus 79 d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 156 (170)
T cd04116 79 DCCLLTFAVDDSQSFQN--LSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDA 156 (170)
T ss_pred CEEEEEEECCCHHHHHh--HHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCC
Confidence 99999999987765432 33333221 1346899999999986321 1122333334445 36888999887
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 157 ~~ 158 (170)
T cd04116 157 TN 158 (170)
T ss_pred CC
Confidence 65
No 320
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.86 E-value=2e-05 Score=78.83 Aligned_cols=126 Identities=12% Similarity=0.069 Sum_probs=75.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH--H--------Hh----hhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHh-h
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER--D--------EF----LQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIE-R 171 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er--~--------~f----~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie-~ 171 (595)
+.|-..|++||+++.+.+...+- . .+ ..+. ...+.+.||+|.. ...+. ..+. .
T Consensus 3 I~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--------~~~~~--~~~~~~ 72 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--------MWTED--SCMQYQ 72 (221)
T ss_pred EEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--------hHHHh--HHhhcC
Confidence 34567889999999999853211 1 11 1222 2345678999964 11111 1334 8
Q ss_pred cCeEEEEEeCCCCCCCCc-hHHHHHHHHhC--CCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRC-EDLERYVKEVS--PHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~-~~Le~~lk~v~--~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++++|+|+.++.++.. ..+...+.... .+.|+|||.||+|+....+. .....+....+..++.+||+++.+
T Consensus 73 ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~g 150 (221)
T cd04148 73 GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN 150 (221)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 999999999998866532 12222333222 46899999999999654221 111122233467889999998876
No 321
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.86 E-value=2.1e-05 Score=73.27 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=38.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee--eEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH--FQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh--~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.||||||||+|++++... ++..++++.+ .....++. .+.++||||..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 37899999999999999999987542 3444444433 22233433 46789999965
No 322
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.86 E-value=6.8e-05 Score=74.43 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=47.8
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
..+.++||||... +.......+..+|++|+|+|+..........+.+.+. ..++|.++|+||+|++
T Consensus 71 ~~i~iiDtpG~~~--------f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~--~~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHVN--------FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAI--LEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCcc--------hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--HcCCCEEEEEECcccC
Confidence 5678999999642 2345567788999999999998776543333333332 2458999999999986
No 323
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.86 E-value=3.2e-06 Score=95.85 Aligned_cols=138 Identities=23% Similarity=0.322 Sum_probs=89.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|+++|.+|+|||||++.|+|.. ....+-+++| |..... ++.+.+++
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~-----------------~~~~G~I~i~--g~~i~~-------------~~~~~~~~ 406 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFY-----------------EPDSGQILLD--GHDLAD-------------YTLASLRR 406 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-----------------CCCCCeEEEC--CEeHHh-------------cCHHHHHh
Confidence 468999999999999999999865 3455667777 654333 45566777
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCC-CCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIM-ITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~-~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
.+..+.+-...++.++.+| .|+.+ .....+.....+....++++..++.. .|-..+|||.++...||.+++
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 7777777677777777777 44431 11100001111112345555554322 566789999999999999996
Q ss_pred HHHhCCceee-cCCCCCChhhhh
Q psy9995 474 DFVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 474 D~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+-+++-. +|-.+.|+..-.
T Consensus 487 ---~~~illLDEpts~LD~~~~~ 506 (571)
T TIGR02203 487 ---DAPILILDEATSALDNESER 506 (571)
T ss_pred ---CCCEEEEeCccccCCHHHHH
Confidence 4576654 555566765555
No 324
>KOG2486|consensus
Probab=97.85 E-value=1.4e-05 Score=81.73 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=52.7
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCccee--EecCCCCCceeeEEEEcCCceEEEeCCCCccCC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKV--SVSATPGKTKHFQTLFVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kv--sVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~ 381 (595)
.+...++++|.+|||||||||.+++.+.+ .++.+||.|+-.+.+.++..++++|.||.-+..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCccccc
Confidence 44578999999999999999999987644 345589999999999999999999999965443
No 325
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.85 E-value=1.9e-05 Score=74.23 Aligned_cols=55 Identities=33% Similarity=0.411 Sum_probs=36.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEe--cCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSV--SATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsV--s~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|.+.. +.. ..++|.+-....+.++. .+.++||||..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 479999999999999999998754 222 23334332222333433 35689999964
No 326
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.85 E-value=1.7e-05 Score=73.98 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=37.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|++... ...+++.|.......+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 4799999999999999999987652 22233344322223334332 46799999964
No 327
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.85 E-value=2.1e-05 Score=74.00 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=38.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..+|++||.+|||||||++++....-... ..+.|..-+...+.++. .+.++||||..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE 63 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH
Confidence 37899999999999999999986542211 22333333334444443 57899999953
No 328
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.84 E-value=6.1e-05 Score=85.01 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=54.9
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
..+|.+..+.|+||||.. .+....++.+..+|.+|+|+|+..........+.+.++ ..+.|+|+++||+|
T Consensus 74 ~~~~~~~~inliDTPG~~--------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~--~~~~PiivviNKiD 143 (527)
T TIGR00503 74 QFPYRDCLVNLLDTPGHE--------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTR--LRDTPIFTFMNKLD 143 (527)
T ss_pred EEeeCCeEEEEEECCChh--------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH--hcCCCEEEEEECcc
Confidence 467999999999999962 34556788899999999999998764433333444443 34689999999999
Q ss_pred CC
Q psy9995 214 LL 215 (595)
Q Consensus 214 Ll 215 (595)
+.
T Consensus 144 ~~ 145 (527)
T TIGR00503 144 RD 145 (527)
T ss_pred cc
Confidence 85
No 329
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.84 E-value=1.8e-05 Score=75.53 Aligned_cols=126 Identities=13% Similarity=0.032 Sum_probs=74.1
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---H-----------hhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---E-----------FLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---~-----------f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
+-|-..|+.||+++.+.+...+-. . ...+.+.. +.+.|++|-... .......++.+
T Consensus 7 v~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--------~~~~~~~~~~~ 78 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA--------ILLNDAELAAC 78 (169)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccc--------cccchhhhhcC
Confidence 445678899999999998765421 0 11223322 234466653211 11112246899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh--CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV--SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v--~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
|++|+|+|+.+|.++. .+..++..+ ..+.|+++|+||+|+.+..+. ....++.+..+. .++.+||+++.+
T Consensus 79 d~~llv~d~~~~~s~~--~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 79 DVACLVYDSSDPKSFS--YCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred CEEEEEEeCCCHHHHH--HHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 9999999998875432 233444433 236899999999999654321 111222233354 458899998865
No 330
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.83 E-value=1e-05 Score=76.88 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=37.6
Q ss_pred EEEEeecCCCCcchHhhhhcCccee--------E------ecCCCCCceeeEEEEc--------CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKV--------S------VSATPGKTKHFQTLFV--------DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kv--------s------Vs~tPG~TKh~Qti~~--------~~~~~liDtPGl~ 378 (595)
+|++||.+|||||||+|+|++...+ . +..+.|.|.+.+.+.+ .-.+.++||||..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh
Confidence 5899999999999999999874311 1 1123466665444322 2346799999986
No 331
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=5.1e-06 Score=89.13 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=81.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhh
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMR 401 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lr 401 (595)
..++++||.+|.||||+...|.+.. ..+.+.+.+| |-.... +..+.+|
T Consensus 289 g~tvAiVg~SG~gKsTI~rllfRFy-----------------D~~sG~I~id--~qdir~-------------vtq~slR 336 (497)
T COG5265 289 GKTVAIVGESGAGKSTILRLLFRFY-----------------DVNSGSITID--GQDIRD-------------VTQQSLR 336 (497)
T ss_pred ccEEEEEeCCCCcHHHHHHHHHHHh-----------------CCcCceEEEc--chhHHH-------------hHHHHHH
Confidence 4689999999999999999999865 6677888888 543222 1234455
Q ss_pred hhhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHH
Q psy9995 402 DHVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 402 d~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLk 473 (595)
..++.+.+---+++.+++.+ .||-+..+..+...+.+.....+|+..++.. ||++.+||+.++.+.||.||+
T Consensus 337 ~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred HHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 55555544444455555544 5776544332222222233345666666554 999999999999999999998
Q ss_pred H
Q psy9995 474 D 474 (595)
Q Consensus 474 D 474 (595)
+
T Consensus 417 ~ 417 (497)
T COG5265 417 N 417 (497)
T ss_pred C
Confidence 5
No 332
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.82 E-value=2.3e-05 Score=75.91 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=39.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|.|.+.....+.+|.+.|.. .+.. +-.+.++||||..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEECCEEEEEEECCCCH
Confidence 47899999999999999999998654344444444322 2222 3467899999975
No 333
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.80 E-value=2.9e-05 Score=77.61 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=79.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHH-H--------Hhhhh------cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMER-D--------EFLQW------RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er-~--------~f~~w------rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..++.||+++.+.+...+- . .+..+ ....+.+.||+|... + ..++. ..+..
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~---~~~~~---~~~~~ 85 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--F---GGLRD---GYYIH 85 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh--h---hhhhH---HHccc
Confidence 3466677888888888887653321 1 11111 234567889999521 1 12222 24678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHH-HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQ-RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|.+|+|+|..++.++. .+..|+..+ ..+.|++||.||+||..... ...+ .+....+..++.+||+++.+
T Consensus 86 ~~~~ilvfD~~~~~s~~--~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~ 159 (219)
T PLN03071 86 GQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYN 159 (219)
T ss_pred ccEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCC
Confidence 99999999999886653 344454433 35689999999999854321 1122 33344567889999999876
No 334
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.80 E-value=5.8e-05 Score=74.97 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=76.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhh-cC--eeeEEEeCCCcccChhhhhHHHHHHH-HHHHhh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD---------EF----LQW-RR--ELNLLQEEDGLVITPYEKNLDFWRQL-WRVIER 171 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~---------~f----~~w-rg--~~~~L~DT~Gi~~t~~ern~e~~rql-~~vie~ 171 (595)
+-|-..+++||+++.+.|....-. .| ..+ .+ ..+.+.||+|.. + +..+ ...+..
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----~----~~~~~~~~~~~ 75 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----R----FRSITRSYYRN 75 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcch-----h----HHHHHHHHhcC
Confidence 455678899999999998754321 01 111 12 235678999842 1 2222 235678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CC-CCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEeccc
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SP-HKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATN 241 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~-~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~ 241 (595)
+|.+|+|+|..++.++. .+..++..+ .. ..++|||.||+|+... ++...+. +..+..++.+||++
T Consensus 76 ~d~iilv~D~~~~~Sf~--~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~Sak~ 150 (211)
T cd04111 76 SVGVLLVFDITNRESFE--HVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA---KDLGMKYIETSART 150 (211)
T ss_pred CcEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH---HHhCCEEEEEeCCC
Confidence 99999999999886543 344444433 12 3457889999999653 2333333 33467889999998
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 151 g~~ 153 (211)
T cd04111 151 GDN 153 (211)
T ss_pred CCC
Confidence 876
No 335
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.80 E-value=2.3e-05 Score=81.43 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=39.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCC-------CCCceeeE--EEEc--C---CceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSAT-------PGKTKHFQ--TLFV--D---DELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~t-------PG~TKh~Q--ti~~--~---~~~~liDtPGl~ 378 (595)
.++|++||.+|+|||||||+|++......+.. ...|..++ ...+ + -.+.++||||+-
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg 74 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG 74 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence 47899999999999999999998765544321 12222222 2222 2 258999999985
No 336
>PTZ00258 GTP-binding protein; Provisional
Probab=97.79 E-value=4.3e-05 Score=82.86 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=54.7
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc-----------------CeeeEEEeCCCcccCh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR-----------------RELNLLQEEDGLVITP 154 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr-----------------g~~~~L~DT~Gi~~t~ 154 (595)
+.-.+-|-.+||.||||++|.|.+..-. ....|. ...+.|+||||++...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3345778899999999999999765322 111121 2237899999998643
Q ss_pred hhhhHHHHHHHHHHHhhcCeEEEEEeCC
Q psy9995 155 YEKNLDFWRQLWRVIERSDVIVQIVDAR 182 (595)
Q Consensus 155 ~ern~e~~rql~~vie~sDvVl~VvDAR 182 (595)
.+ ...+-.+....++++|+|++|||+.
T Consensus 100 ~~-g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SE-GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cc-hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 33 2234567788899999999999984
No 337
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.79 E-value=2.8e-05 Score=73.29 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=37.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|.+.+-.. ..++-|.+-...++..+ -.+.++||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 689999999999999999999765211 12222333333444433 247899999975
No 338
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.79 E-value=2.4e-05 Score=75.68 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=37.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCccee--EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKV--SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kv--sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||||++++..-. ...++.|.+-....+.++. .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 47999999999999999999975522 1233444333333444443 35689999974
No 339
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.78 E-value=2.3e-05 Score=73.53 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=35.7
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeE---ecCCCCCcee--eEEEEc-CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVS---VSATPGKTKH--FQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvs---Vs~tPG~TKh--~Qti~~-~~~~~liDtPGl~ 378 (595)
+|++||.+|||||||+|+|.+..... ....+..|.. +..+.. +..+.++||||..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 47999999999999999998743210 1111222322 333333 3578899999975
No 340
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.78 E-value=0.00013 Score=74.43 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=59.1
Q ss_pred eeEEEeCCCcccCh-----hhhhHHHHHHHHHHHh-hcCeEEEEEeCCCCCCCCc-hHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 141 LNLLQEEDGLVITP-----YEKNLDFWRQLWRVIE-RSDVIVQIVDARNPLLFRC-EDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~-----~ern~e~~rql~~vie-~sDvVl~VvDAR~Pl~~~~-~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
.+.|+||||+.... ......+.+++...++ ..++||+|+||+..+...+ ..+.+.+. ..++++|+|+||+|
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld--~~~~rti~ViTK~D 203 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD--PQGERTIGVITKLD 203 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH--HcCCcEEEEEECCC
Confidence 46799999996431 2222345566778888 4579999999987665433 34445554 35789999999999
Q ss_pred CCCHHHHHHHHHHHhhC
Q psy9995 214 LLTRKQRCYWTKYFNSV 230 (595)
Q Consensus 214 Ll~~~~~~~w~~~~~~~ 230 (595)
.+.+... |.+.+..+
T Consensus 204 ~~~~~~~--~~~~~~~~ 218 (240)
T smart00053 204 LMDEGTD--ARDILENK 218 (240)
T ss_pred CCCccHH--HHHHHhCC
Confidence 9875432 77766543
No 341
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.77 E-value=2.6e-05 Score=73.28 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=38.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|.+.+.. ......|..+-++ ..+.++. .+.++||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 689999999999999999999754 3334445444333 3343332 47899999964
No 342
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.77 E-value=5.8e-05 Score=71.37 Aligned_cols=128 Identities=13% Similarity=-0.001 Sum_probs=76.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.+-..|+.||+++.+.+...+-. ..+.+.+. .+.+.||+|... + ..+++. .+..+|.
T Consensus 4 i~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~---~~~~~~---~~~~~~~ 75 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ--F---TAMREL---YIKSGQG 75 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCccc--c---hhhhHH---HHhhCCE
Confidence 456678999999999998744321 01124332 446789999532 1 122333 4567999
Q ss_pred EEEEEeCCCCCCCCch-HHHHHHHHh--CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCC-CeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCE-DLERYVKEV--SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVN-VAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~-~Le~~lk~v--~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~g-i~vi~~SA~~~~~ 244 (595)
+|+|+|..++.++... .+...+... ..+.|+|+|.||+|+.+.... ..-..+.+..+ .+++.+||+++.+
T Consensus 76 ~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (168)
T cd04177 76 FLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence 9999999877554221 122222221 246899999999999653211 11112222334 6789999998866
No 343
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.76 E-value=2.9e-05 Score=72.53 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=36.8
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
+|++||.+|||||||+|+|.....+...++-|.+.+ .+.. +..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEECCEEEEEEECCCCH
Confidence 489999999999999999976654433333343322 2222 3467899999974
No 344
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.76 E-value=2e-05 Score=76.77 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=39.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEe---------------cCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSV---------------SATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsV---------------s~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
.+|++||.+|||||||+|+|++...... ..+.|+|.+.....+ ...+.++||||..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA 76 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH
Confidence 3799999999999999999996321111 123577766544333 4468899999975
No 345
>KOG0462|consensus
Probab=97.76 E-value=8.8e-05 Score=81.85 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=71.3
Q ss_pred HhhhhcC---eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEE
Q psy9995 133 EFLQWRR---ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILL 209 (595)
Q Consensus 133 ~f~~wrg---~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVl 209 (595)
+..-|+. .+..|+||||-.+-.. +..+++..+|=+|+||||...... .-+..+-..++.+-.+|.|+
T Consensus 115 asify~~~~~ylLNLIDTPGHvDFs~--------EVsRslaac~G~lLvVDA~qGvqA--QT~anf~lAfe~~L~iIpVl 184 (650)
T KOG0462|consen 115 ASIFYKDGQSYLLNLIDTPGHVDFSG--------EVSRSLAACDGALLVVDASQGVQA--QTVANFYLAFEAGLAIIPVL 184 (650)
T ss_pred eEEEEEcCCceEEEeecCCCcccccc--------eehehhhhcCceEEEEEcCcCchH--HHHHHHHHHHHcCCeEEEee
Confidence 5666777 8889999999654333 345578999999999999876542 22333333445678899999
Q ss_pred eCCCCC--CHHHHH-HHHHHHhhCCCeEEEEecccCCC
Q psy9995 210 NKADLL--TRKQRC-YWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 210 NK~DLl--~~~~~~-~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
||+|+- ++++.. ...+-|....-+++++||++|.+
T Consensus 185 NKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~ 222 (650)
T KOG0462|consen 185 NKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLN 222 (650)
T ss_pred eccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCcc
Confidence 999994 344443 33334433345899999999987
No 346
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.76 E-value=3.6e-05 Score=73.35 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=39.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
.++|+++|.+||||||||+.|.........+|-| -++..+.. .-.+.++||||..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g--~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCcc--cceEEEEECCEEEEEEECCCCH
Confidence 4799999999999999999998655443333333 33333333 3468999999975
No 347
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.76 E-value=2.1e-05 Score=86.39 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=44.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEec------------------------C------CCCCceeeEEEEc---CC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVS------------------------A------TPGKTKHFQTLFV---DD 367 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs------------------------~------tPG~TKh~Qti~~---~~ 367 (595)
..++|+++|.+|+|||||+|+|+......+. + .+|+|.+.....+ +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4589999999999999999999854332211 1 5899999765444 45
Q ss_pred ceEEEeCCCCc
Q psy9995 368 ELLLCDCPGLV 378 (595)
Q Consensus 368 ~~~liDtPGl~ 378 (595)
.+.++||||..
T Consensus 85 ~i~liDtpG~~ 95 (425)
T PRK12317 85 YFTIVDCPGHR 95 (425)
T ss_pred EEEEEECCCcc
Confidence 78999999964
No 348
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.75 E-value=3.8e-05 Score=71.05 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=35.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee-e-EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-F-QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh-~-Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.||||||||+|++++.... ...+.++.. + ..+.++. .+.++||||..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 57999999999999999999976522 122222222 1 1233332 25679999964
No 349
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.75 E-value=2.3e-05 Score=74.01 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=24.3
Q ss_pred EEEeecCCCCcchHhhhhcCcceeEecCCC
Q psy9995 325 IGLVGYPNVGKSSTINALLNAKKVSVSATP 354 (595)
Q Consensus 325 i~lvG~pnvGKSSliN~L~~~~kvsVs~tP 354 (595)
|+++|..++|||||||+|+|.....++..|
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~ 30 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP 30 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc
Confidence 689999999999999999997655555444
No 350
>PRK12740 elongation factor G; Reviewed
Probab=97.75 E-value=7.8e-05 Score=86.56 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=55.5
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
...|.+..+.|+||||.. ++...+...+..+|++|+|+|+..+.......+...+. ..+.|.|+|+||+|
T Consensus 54 ~~~~~~~~i~liDtPG~~--------~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~--~~~~p~iiv~NK~D 123 (668)
T PRK12740 54 TCEWKGHKINLIDTPGHV--------DFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAE--KYGVPRIIFVNKMD 123 (668)
T ss_pred EEEECCEEEEEEECCCcH--------HHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHH--HcCCCEEEEEECCC
Confidence 567889999999999964 23445667788999999999998776544433434443 34689999999999
Q ss_pred CCCH
Q psy9995 214 LLTR 217 (595)
Q Consensus 214 Ll~~ 217 (595)
+...
T Consensus 124 ~~~~ 127 (668)
T PRK12740 124 RAGA 127 (668)
T ss_pred CCCC
Confidence 8753
No 351
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.75 E-value=4.3e-05 Score=72.28 Aligned_cols=128 Identities=14% Similarity=0.048 Sum_probs=75.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-..|+.|||++.+.+...+-. ....+.+ ..+.+.||+|-.. +.. ++. ..+..+|+
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~---~~~---~~~~~~~~ 74 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED--YDR---LRP---LSYPMTDV 74 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc--ccc---ccc---ccCCCCCE
Confidence 345567888999988887654311 0112222 3356889999432 111 111 24678999
Q ss_pred EEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHHH-H-------------HHHHHHhhCCC-eEEEE
Q psy9995 175 IVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQR-C-------------YWTKYFNSVNV-AVAFF 237 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~-~-------------~w~~~~~~~gi-~vi~~ 237 (595)
+|+|+|..++.++..- .+...+.....+.|+++|.||+|+.+.... . .-..+.+..+. .++.+
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 9999999888664322 122333333467899999999998643211 0 01112223353 67889
Q ss_pred ecccCCC
Q psy9995 238 SATNIYD 244 (595)
Q Consensus 238 SA~~~~~ 244 (595)
||+++.+
T Consensus 155 Sa~~~~g 161 (174)
T cd04135 155 SALTQKG 161 (174)
T ss_pred cCCcCCC
Confidence 9999876
No 352
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.74 E-value=3.4e-05 Score=70.58 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=36.7
Q ss_pred EEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 325 i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
|+++|.+|||||||+|+|.+.. ......|.++-.+..+.. .-.+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 7999999999999999999864 333334544333333322 2357899999964
No 353
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.74 E-value=4.1e-05 Score=73.98 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=39.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc----CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV----DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~----~~~~~liDtPGl~ 378 (595)
.++|++||.+||||||||+++....-+...+|.|.+-....+.. .-.+.++||||..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 47899999999999999999987654333333443333222322 2357899999974
No 354
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=6.5e-06 Score=91.65 Aligned_cols=138 Identities=21% Similarity=0.146 Sum_probs=75.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||+|.|+|.... ..+-+.++ |+...+ +..+..+.
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~~-----------------~~G~I~vn--g~~l~~-------------l~~~~~~k 395 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLAP-----------------TQGEIRVN--GIDLRD-------------LSPEAWRK 395 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCC-----------------CCceEEEC--Cccccc-------------cCHHHHHh
Confidence 46899999999999999999996621 22333444 443332 23344555
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCCCCCCCCCHHHHHHH------hhhhcCccccCCCCCHHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGEDPNRPPFSEELCNA------YGYNRGFMTSNGQPDNPRSARYILKDF 475 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~~~~~~~~~~e~L~~------~a~~rG~~~~gG~pD~~rAAr~iLkD~ 475 (595)
++..|.+-...++.++-+|. .+-+..+..+...........+|+.. .-..+|...+|||.++...||++|++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~- 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP- 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC-
Confidence 55555544445555555541 21110000000000000111222221 01127888999999999999999987
Q ss_pred HhCCce-eecCCCCCChhhhh
Q psy9995 476 VNGHLL-YCQAPPGVPQEKYH 495 (595)
Q Consensus 476 ~~GKL~-~~~~PP~~~~~~f~ 495 (595)
+.++ +-+|--+.|.+.=+
T Consensus 475 --~~l~llDEpTA~LD~etE~ 493 (559)
T COG4988 475 --ASLLLLDEPTAHLDAETEQ 493 (559)
T ss_pred --CCEEEecCCccCCCHhHHH
Confidence 6665 44555566654433
No 355
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.73 E-value=6.8e-06 Score=93.31 Aligned_cols=138 Identities=29% Similarity=0.325 Sum_probs=82.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+++++|.+|+|||||++.|+|.. ....+-+.+| |..... ++...++.
T Consensus 367 e~i~IvG~sGsGKSTLlklL~gl~-----------------~p~~G~I~i~--g~~i~~-------------~~~~~~~~ 414 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQLLLRFY-----------------DPQSGRILLD--GVDLRQ-------------LDPAELRA 414 (576)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-----------------CCCCCEEEEC--CEEHHh-------------cCHHHHHH
Confidence 468999999999999999999865 2234555666 543332 33445666
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.+| .|+.+.....+...........+++..+.. ..|...+|||.+....||.++++
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 6666666666677777776 344321110000000011122344444422 15666889999999999999973
Q ss_pred HHhCCce-eecCCCCCChhhhh
Q psy9995 475 FVNGHLL-YCQAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~-~~~~PP~~~~~~f~ 495 (595)
-.++ .-+|-.+.|+..-+
T Consensus 495 ---~~ililDEpts~lD~~~~~ 513 (576)
T TIGR02204 495 ---APILLLDEATSALDAESEQ 513 (576)
T ss_pred ---CCeEEEeCcccccCHHHHH
Confidence 4555 44555556665444
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.73 E-value=5.6e-06 Score=103.73 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=86.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhh
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMR 401 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lr 401 (595)
.-+|||||.+|+|||||+++|+|-. . ..+-+++| |+.... ++.+.+|
T Consensus 1245 GekvaIvGrSGsGKSTLl~lL~rl~-----------------~-~~G~I~Id--G~di~~-------------i~~~~lR 1291 (1490)
T TIGR01271 1245 GQRVGLLGRTGSGKSTLLSALLRLL-----------------S-TEGEIQID--GVSWNS-------------VTLQTWR 1291 (1490)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhc-----------------C-CCcEEEEC--CEEccc-------------CCHHHHH
Confidence 3579999999999999999999854 2 34667888 776554 5677888
Q ss_pred hhhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 402 DHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 402 d~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
..+..+.+-...++.++.+|.-......+.+.....+.....+++..+..+ .|...++||.++...||++|+
T Consensus 1292 ~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr- 1370 (1490)
T TIGR01271 1292 KAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS- 1370 (1490)
T ss_pred hceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC-
Confidence 888888887788888877764110000000000000111122233222211 566789999999999999997
Q ss_pred HHhCCceee-cCCCCCChhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEK 493 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~ 493 (595)
+.+++.. +|--+.|...
T Consensus 1371 --~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271 1371 --KAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred --CCCEEEEeCCcccCCHHH
Confidence 4787655 4555566543
No 357
>PTZ00099 rab6; Provisional
Probab=97.72 E-value=0.00015 Score=70.11 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=58.7
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCC
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLL 215 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl 215 (595)
..+.|.||+|... + ..++ ...+..+|++|+|+|+.++.++.. +..++..+ ..+.|+|||.||+||.
T Consensus 29 v~l~iwDt~G~e~--~---~~~~---~~~~~~ad~~ilv~D~t~~~sf~~--~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 29 VRLQLWDTAGQER--F---RSLI---PSYIRDSAAAIVVYDITNRQSFEN--TTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEECCChHH--h---hhcc---HHHhCCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 3456889999532 1 1112 235689999999999988765432 23333322 2356789999999995
Q ss_pred C-----HHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 216 T-----RKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 216 ~-----~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
. .++...| ....+..++.+||+++.+
T Consensus 99 ~~~~v~~~e~~~~---~~~~~~~~~e~SAk~g~n 129 (176)
T PTZ00099 99 DLRKVTYEEGMQK---AQEYNTMFHETSAKAGHN 129 (176)
T ss_pred cccCCCHHHHHHH---HHHcCCEEEEEECCCCCC
Confidence 3 2233333 334466677899999876
No 358
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.72 E-value=3e-05 Score=76.43 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=41.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce------eEecC---------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK------VSVSA---------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k------vsVs~---------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
.++|+++|.+|+|||||+++|++... ..+.. ..|+|.+...... +..+.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 37899999999999999999986411 11111 4688877654433 4568999999974
No 359
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.72 E-value=4.9e-05 Score=74.51 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=40.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|++||.+|||||||++.+.+..- ....+|.|..-+...+.++. .+.|+||||..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 358999999999999999999987542 12334455433333444432 57799999964
No 360
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.72 E-value=0.0002 Score=70.19 Aligned_cols=90 Identities=16% Similarity=0.242 Sum_probs=62.4
Q ss_pred eeEEEeCCCcccChhhhhHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCC
Q psy9995 141 LNLLQEEDGLVITPYEKNLDFWRQLW-RVIERSDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLT 216 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~~ern~e~~rql~-~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~ 216 (595)
.+.|.||+|.. + .+.+| ..+..+|.+|+|+|..++.++.. +..|+.++ .++.|+|||.||+||..
T Consensus 56 ~l~iwDt~G~~-----~----~~~l~~~~~~~ad~illVfD~t~~~Sf~~--~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 56 KLQLWDTSGQG-----R----FCTIFRSYSRGAQGIILVYDITNRWSFDG--IDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred EEEEEeCCCcH-----H----HHHHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 45578999842 1 22233 24579999999999999887643 34555444 35678999999999853
Q ss_pred -----HHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 217 -----RKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 217 -----~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.++.+.|. +..+..++.+||+++.+
T Consensus 125 ~~~v~~~~~~~~a---~~~~~~~~e~SAk~g~~ 154 (189)
T cd04121 125 KRQVATEQAQAYA---ERNGMTFFEVSPLCNFN 154 (189)
T ss_pred ccCCCHHHHHHHH---HHcCCEEEEecCCCCCC
Confidence 34444444 44578899999999876
No 361
>PRK13351 elongation factor G; Reviewed
Probab=97.71 E-value=0.00018 Score=83.76 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=61.0
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
.+.|.+..+.|+||||.. ++.......+..+|.+|+|+|+..+.......+...+. ..+.|+++|+||+|
T Consensus 67 ~~~~~~~~i~liDtPG~~--------df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~--~~~~p~iiviNK~D 136 (687)
T PRK13351 67 SCDWDNHRINLIDTPGHI--------DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQAD--RYGIPRLIFINKMD 136 (687)
T ss_pred EEEECCEEEEEEECCCcH--------HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCCEEEEEECCC
Confidence 567999999999999964 23445667889999999999998876544444444444 34789999999999
Q ss_pred CCCH---HHHHHHHHHH
Q psy9995 214 LLTR---KQRCYWTKYF 227 (595)
Q Consensus 214 Ll~~---~~~~~w~~~~ 227 (595)
+... .....+.+.|
T Consensus 137 ~~~~~~~~~~~~i~~~l 153 (687)
T PRK13351 137 RVGADLFKVLEDIEERF 153 (687)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 9753 3334444444
No 362
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.71 E-value=9.7e-05 Score=69.90 Aligned_cols=128 Identities=16% Similarity=0.050 Sum_probs=73.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+.|-..++.||+++.+.+....-. ....+.+. .+.+.||+|... +. .++. ..+..+|+
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~---~~~~---~~~~~~d~ 75 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED--YD---RLRP---LSYPDTDV 75 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchh--hh---hccc---cccCCCCE
Confidence 456677888888888888764311 01123333 356889999531 11 1111 24678999
Q ss_pred EEEEEeCCCCCCCCchH--HHHHHHHhCCCCcEEEEEeCCCCCCHHHHH-H----------HH---HHHhhCC-CeEEEE
Q psy9995 175 IVQIVDARNPLLFRCED--LERYVKEVSPHKRNMILLNKADLLTRKQRC-Y----------WT---KYFNSVN-VAVAFF 237 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~--Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~-~----------w~---~~~~~~g-i~vi~~ 237 (595)
+++|.|+.++.++.+.. +...+.....+.|+++|.||+|+.+..... . |. ++....+ ..++.+
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 99999998775432211 112222223578999999999986532211 0 11 1111223 367889
Q ss_pred ecccCCC
Q psy9995 238 SATNIYD 244 (595)
Q Consensus 238 SA~~~~~ 244 (595)
||+++.+
T Consensus 156 Sa~~~~~ 162 (175)
T cd01870 156 SAKTKEG 162 (175)
T ss_pred ccccCcC
Confidence 9987765
No 363
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.71 E-value=4.2e-05 Score=73.68 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=38.9
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..+|+++|.+|||||||+|.|.+.......++.|.+. ..+.+ +..+.++||||..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 4789999999999999999999765433344444332 22333 3467899999964
No 364
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.71 E-value=3.6e-05 Score=73.16 Aligned_cols=53 Identities=30% Similarity=0.315 Sum_probs=39.8
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
+|+++|.+|||||||+|.|.+.......+|.|.+.. .+.. +..+.++||||..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~ 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGA 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcH
Confidence 479999999999999999998754455667776533 3333 4467899999963
No 365
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.70 E-value=0.00013 Score=83.28 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=64.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc------Ce------------eeEEEeCCCcccChh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR------RE------------LNLLQEEDGLVITPY 155 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr------g~------------~~~L~DT~Gi~~t~~ 155 (595)
+.+.|-.+++.||+|++|.|.+..-. .+..|. +. .+.|+||||... |
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~--f 84 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA--F 84 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH--H
Confidence 45677889999999999999643210 111111 10 157899999531 1
Q ss_pred hhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC
Q psy9995 156 EKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT 216 (595)
Q Consensus 156 ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~ 216 (595)
.....+.+..+|++++|+|+.+...........++. ..+.|+++++||+|+.+
T Consensus 85 ------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~--~~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 85 ------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILK--RRKTPFVVAANKIDRIP 137 (586)
T ss_pred ------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHH--HcCCCEEEEEECcCCch
Confidence 222224567899999999998754333333334444 34789999999999863
No 366
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.70 E-value=0.00011 Score=79.05 Aligned_cols=73 Identities=21% Similarity=0.152 Sum_probs=52.6
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH----Hhh---------hhcC-----------------eeeEEEeCCCcccChhhhh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD----EFL---------QWRR-----------------ELNLLQEEDGLVITPYEKN 158 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~----~f~---------~wrg-----------------~~~~L~DT~Gi~~t~~ern 158 (595)
+-|-.+||.||||++|.|.+..-. -|. .+.. ..+.|+|+||++....+ .
T Consensus 5 vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~-g 83 (364)
T PRK09601 5 CGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK-G 83 (364)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh-H
Confidence 456789999999999999986521 111 1111 24789999999864333 2
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCC
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDAR 182 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR 182 (595)
..+-.+....++++|+|++|||+.
T Consensus 84 ~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 84 EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 334577888899999999999995
No 367
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.69 E-value=0.00022 Score=67.98 Aligned_cols=127 Identities=12% Similarity=0.039 Sum_probs=76.1
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHH-HHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLW-RVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~-~vie~sD 173 (595)
+.|-..|+.||||+.+.+....-. .-..+.+ ..+.|+||+|... ++.++ .....+|
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~~~~ 74 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE---------YSILPQKYSIGIH 74 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHh---------hHHHHHHHHhhCC
Confidence 456678999999999998843210 0112222 2356889999531 22222 3566899
Q ss_pred eEEEEEeCCCCCCCCc-hHH-HHHHHHh-CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRC-EDL-ERYVKEV-SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~-~~L-e~~lk~v-~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+++|+|..+...+.. ..+ ...+... ..+.|+|+|.||+|+..... ...+..+....+..++.+||+++.+
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (180)
T cd04137 75 GYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENEN 150 (180)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999886543211 111 1222211 23579999999999964321 1223333444467889999998766
No 368
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.69 E-value=2.9e-05 Score=71.64 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=37.9
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC---CceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD---DELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~---~~~~liDtPGl~ 378 (595)
+|+++|.+|||||||+|+|++.. .++..+.+|.+.+. +..+ -.+.++||||..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChH
Confidence 48999999999999999999765 34444445444332 3333 246799999975
No 369
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.68 E-value=9.3e-05 Score=70.38 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=59.5
Q ss_pred eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 141 LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
.+.+.||+|... +. .++. ..+..+|++|+|+|+.++.++..- .+...+.....+.|+++|.||+||.+..
T Consensus 49 ~~~i~Dt~G~~~--~~---~~~~---~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 120 (173)
T cd04130 49 RLQLCDTAGQDE--FD---KLRP---LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120 (173)
T ss_pred EEEEEECCCChh--hc---cccc---cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccCh
Confidence 346799999621 11 1111 256789999999999988765431 2223333223468999999999996432
Q ss_pred H--------------HHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 219 Q--------------RCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 219 ~--------------~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
. .+.-..+.+..+. .++.+||+++.+
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~ 161 (173)
T cd04130 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKN 161 (173)
T ss_pred hHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 1 1111222233455 788999999876
No 370
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.67 E-value=4.6e-05 Score=75.03 Aligned_cols=55 Identities=18% Similarity=0.483 Sum_probs=38.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.||||||||||.+++.. ..-...|.++..+ ..+.++. .+.++||||+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~-f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQE-FPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-CCcccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 479999999999999999999754 2222345554333 2333433 46799999975
No 371
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.67 E-value=3.2e-05 Score=73.74 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=35.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee--eEEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH--FQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh--~Qti~~~---~~~~liDtPGl~ 378 (595)
.+|+++|.||||||||+|.+++.. +.....| ++.+ ...+.++ -.+.++||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-FVESYYP-TIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CccccCc-chhhhEEEEEEECCEEEEEEEEECCChH
Confidence 479999999999999999999754 2222223 2222 1222222 246899999974
No 372
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.67 E-value=5.2e-05 Score=73.67 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=37.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
++|++||.+|||||||++.+.+.........|.++..+ ..+.++. .+.++||||-.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE 61 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 47999999999999999999876532112233333333 2344433 57899999953
No 373
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.67 E-value=5.1e-05 Score=70.91 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=35.4
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
+|+++|.||||||||+|++.+.... ...+.++.+. ..+.++. .+.++||||..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 59 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 7899999999999999999976532 1222233222 1233332 46689999975
No 374
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.66 E-value=3.6e-05 Score=70.51 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=31.3
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGL 377 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl 377 (595)
+|++||.||||||||+|+|++... . . ..|.... ... .++||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-~--~--~~t~~~~---~~~--~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-L--Y--KKTQAVE---YND--GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-c--c--ccceeEE---EcC--eeecCchh
Confidence 689999999999999999998752 1 1 1122222 222 68999997
No 375
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.65 E-value=4.8e-05 Score=70.37 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=36.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|++.... ....|.++..+ ..+.+.. .+.++||||..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 47999999999999999999976532 22223333332 2233322 47899999964
No 376
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.65 E-value=4.7e-05 Score=70.89 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=35.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcC-----CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVD-----DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~-----~~~~liDtPGl~ 378 (595)
++|++||.+|||||||+|++++..- .....|..+..+ ..+.+. -.+.++||||..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF-TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH
Confidence 4799999999999999999997532 111123222232 223332 257899999953
No 377
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.65 E-value=5.9e-05 Score=70.02 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=36.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee-e-EEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-F-QTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh-~-Qti~~~---~~~~liDtPGl~ 378 (595)
.+|+++|.||||||||+|+|+...-+ +...+++.+ + ..+.++ -.+.++||||..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 37999999999999999999965422 233333332 1 222333 247889999964
No 378
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.65 E-value=6e-05 Score=70.69 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=36.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcC---CceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVD---DELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~---~~~~liDtPGl~~ 379 (595)
++|+++|.+|||||||+|+|++... .....|.....+. .+..+ -.+.++||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 5799999999999999999997653 2222232221111 12222 2478999999763
No 379
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.65 E-value=2.1e-05 Score=78.13 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=88.7
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhhh
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDH 403 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd~ 403 (595)
.++|+|.+|+|||||+.+|.+-. .++++-+.+| |...-. + ..+..+|..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE-----------------~~~~G~I~i~--g~~~~~----~--------~~~~~~R~~ 78 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE-----------------EPDSGSITVD--GEDVGD----K--------KDILKLRRK 78 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc-----------------CCCCceEEEC--CEeccc----h--------hhHHHHHHh
Confidence 57999999999999999998755 4567778888 632111 0 046788888
Q ss_pred hhhHHHHhhhcCh-hHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-----hcCccccCCCCCHHHHHHHHHHHHH
Q psy9995 404 VPAVNMLCTLVPR-HVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-----NRGFMTSNGQPDNPRSARYILKDFV 476 (595)
Q Consensus 404 ~~~v~~l~~~i~~-~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-----~rG~~~~gG~pD~~rAAr~iLkD~~ 476 (595)
++.|.+-.++||. ++|+| .++.....-....++ ...+.++|+.++- ..-..++|||-++.++||++- .
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA--~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa---M 153 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA--REKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA---M 153 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHH--HHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc---C
Confidence 8998888888886 57777 344221110000000 0124566665433 244568999999999999985 4
Q ss_pred hCCceee-cCCCCCChhhhh
Q psy9995 477 NGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 477 ~GKL~~~-~~PP~~~~~~f~ 495 (595)
+=+++.| .|-...||+.-.
T Consensus 154 ~P~vmLFDEPTSALDPElv~ 173 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVG 173 (240)
T ss_pred CCCEEeecCCcccCCHHHHH
Confidence 5566544 555557887666
No 380
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.64 E-value=9.7e-06 Score=92.25 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=77.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.++++|.+|+|||||++.|+|.. ....+-+++| |..... ++.+.++.
T Consensus 342 ~~~~ivG~sGsGKSTLl~ll~g~~-----------------~p~~G~i~~~--g~~~~~-------------~~~~~~~~ 389 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSLIQRHF-----------------DVSEGDIRFH--DIPLTK-------------LQLDSWRS 389 (569)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc-----------------CCCCCEEEEC--CEEHhh-------------CCHHHHHh
Confidence 468999999999999999999865 2233445555 432221 23444555
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.++ .|+.+.....+.+...+....++++..++. .+|...+|||.++...||.+++
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~- 468 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL- 468 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc-
Confidence 5555555445555666555 333211110000000001112233333322 2566789999999999999987
Q ss_pred HHhCCceee-cCCCCCChhhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f~ 495 (595)
+-+++.. .|--+.|+..-.
T Consensus 469 --~~~illlDEpts~LD~~~~~ 488 (569)
T PRK10789 469 --NAEILILDDALSAVDGRTEH 488 (569)
T ss_pred --CCCEEEEECccccCCHHHHH
Confidence 5666654 444456654433
No 381
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.64 E-value=6.4e-05 Score=80.94 Aligned_cols=60 Identities=28% Similarity=0.336 Sum_probs=38.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCc-----ceeEecCCCCCceeeEEEEcC--CceEEEeCCCCccCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNA-----KKVSVSATPGKTKHFQTLFVD--DELLLCDCPGLVMPSF 382 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~-----~kvsVs~tPG~TKh~Qti~~~--~~~~liDtPGl~~p~f 382 (595)
++.|+|+|-+|+|||||||+|.|- ..+.|+.+ .+|.....+..+ +++.|+|.||+--+.|
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 589999999999999999999872 22233222 245554444432 5899999999987776
No 382
>KOG0054|consensus
Probab=97.64 E-value=9.3e-06 Score=98.91 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=77.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhh
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQM 400 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~l 400 (595)
+.-+|||||.+|+|||||+++|.+-. ....+-++|| |+.... +++..+
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLFRl~-----------------e~~~G~I~ID--gvdI~~-------------igL~dL 1212 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALFRLV-----------------EPAEGEILID--GVDISK-------------IGLHDL 1212 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHhc-----------------CccCCeEEEc--Ceeccc-------------ccHHHH
Confidence 34689999999999999999999743 4456788999 887665 566777
Q ss_pred hhhhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCC---CCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHH
Q psy9995 401 RDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGED---PNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARY 470 (595)
Q Consensus 401 rd~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~---~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~ 470 (595)
|..+..+.+-.-++++++- ++++......+++ +.......+++.....+ .|-..+-||.|....||+
T Consensus 1213 RsrlsIIPQdPvLFsGTvR---~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVR---FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred HhcCeeeCCCCceecCccc---cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHH
Confidence 7776666665666666543 3332111000000 00000111122211111 555667899999999999
Q ss_pred HHHHHHhCCceee
Q psy9995 471 ILKDFVNGHLLYC 483 (595)
Q Consensus 471 iLkD~~~GKL~~~ 483 (595)
+|+ +.|++--
T Consensus 1290 LLr---~skILvL 1299 (1381)
T KOG0054|consen 1290 LLR---KSKILVL 1299 (1381)
T ss_pred Hhc---cCCEEEE
Confidence 986 5787754
No 383
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.63 E-value=6.7e-05 Score=71.17 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=37.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|++||.+||||||||+++++.... ....+.|..-+...+.++. .+.++||||..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 378999999999999999999865411 1222223222222333333 57899999964
No 384
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.63 E-value=3.9e-05 Score=72.47 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=35.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE-EE---cCCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT-LF---VDDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt-i~---~~~~~~liDtPGl~ 378 (595)
++|++||.+|||||||+|+|.+..-. ...|.++-.+.. .. ..-.+.++||||..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 47999999999999999999876532 223332222211 11 12357899999975
No 385
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.63 E-value=1.2e-05 Score=90.89 Aligned_cols=137 Identities=18% Similarity=0.143 Sum_probs=77.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+++| |..... ++.+.++.
T Consensus 345 ~~~~ivG~sGsGKSTL~~ll~g~~-----------------~~~~G~i~~~--g~~i~~-------------~~~~~~~~ 392 (544)
T TIGR01842 345 EALAIIGPSGSGKSTLARLIVGIW-----------------PPTSGSVRLD--GADLKQ-------------WDRETFGK 392 (544)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------------CCCCceEEEC--CEehhh-------------CCHHHHhh
Confidence 468999999999999999999865 2223445555 543222 23344555
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.++. ++.+.....+..........+++++.+.. .+|...+|||.+....||.++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 55555444445555565553 22110100000000011123455555532 25677899999999999999774
Q ss_pred HHhCCceee-cCCCCCChhhh
Q psy9995 475 FVNGHLLYC-QAPPGVPQEKY 494 (595)
Q Consensus 475 ~~~GKL~~~-~~PP~~~~~~f 494 (595)
-+++-. .|=-+.|+..-
T Consensus 473 ---~~ililDEpts~LD~~~~ 490 (544)
T TIGR01842 473 ---PKLVVLDEPNSNLDEEGE 490 (544)
T ss_pred ---CCEEEEeCCccccCHHHH
Confidence 566544 44445665433
No 386
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.63 E-value=7.4e-05 Score=70.39 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=36.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||++.+.+..-.. ...+.|.+-+...+.++. .+.++||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 689999999999999999998754211 111223222222344433 46899999964
No 387
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.61 E-value=6.7e-05 Score=72.44 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=38.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|++.+..-.. ..++.|.+-....+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 479999999999999999999765221 344455444444455443 35789999964
No 388
>CHL00071 tufA elongation factor Tu
Probab=97.60 E-value=5.4e-05 Score=82.87 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=42.6
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeE-------ecC--------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVS-------VSA--------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvs-------Vs~--------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
...++|+++|.+|+|||||+|+|++..... .+. .+|+|.+...... +..+.++||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 346899999999999999999999752211 112 2788888544333 3468999999964
No 389
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.59 E-value=8.4e-05 Score=69.16 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=36.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.+|+++|.||||||||+|.++...-+ ...+.++..+ ..+.++. .+.++||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 58999999999999999999865422 2223333222 2344433 35679999974
No 390
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.59 E-value=8.6e-05 Score=70.20 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=35.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
++|++||.||||||||+|++.+..-.. ..++.+.. -...+.++ -.+.++||||..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcc
Confidence 579999999999999999998655221 12222211 11233343 256799999965
No 391
>PTZ00416 elongation factor 2; Provisional
Probab=97.58 E-value=0.00016 Score=86.04 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=54.3
Q ss_pred CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 139 RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 139 g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
+..+.|+||||... +...+..++..+|.+|+|+|+..........+.+.+. ..++|.|+++||+|+.
T Consensus 91 ~~~i~liDtPG~~~--------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~--~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVD--------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQAL--QERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHh--------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHH--HcCCCEEEEEEChhhh
Confidence 66789999999753 5566788899999999999999887766665655555 3468999999999997
No 392
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.58 E-value=0.00014 Score=75.47 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=51.0
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC-----------------eeeEEEeCCCcccChhhhhHH
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR-----------------ELNLLQEEDGLVITPYEKNLD 160 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg-----------------~~~~L~DT~Gi~~t~~ern~e 160 (595)
|-..||.||||++|.|.+.... +...+.+ ..+.|+|+||++..... ...
T Consensus 3 ivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~-~~g 81 (274)
T cd01900 3 IVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK-GEG 81 (274)
T ss_pred EeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-hhH
Confidence 5579999999999999986542 1111222 13789999999854322 233
Q ss_pred HHHHHHHHHhhcCeEEEEEeCC
Q psy9995 161 FWRQLWRVIERSDVIVQIVDAR 182 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR 182 (595)
+..+....++++|++++|||+.
T Consensus 82 lg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 82 LGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHhCCEEEEEEeCc
Confidence 4566777899999999999984
No 393
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.58 E-value=0.00016 Score=78.85 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=51.3
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH----hhh---------------------------------hcCeeeEEEeCCCcc
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE----FLQ---------------------------------WRRELNLLQEEDGLV 151 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~----f~~---------------------------------wrg~~~~L~DT~Gi~ 151 (595)
+-|-..||+||||++|+|.+.+-.. |.. +....+.++||||+.
T Consensus 4 igivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~ 83 (396)
T PRK09602 4 IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLV 83 (396)
T ss_pred EEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcC
Confidence 3456789999999999999764320 110 222456799999987
Q ss_pred cChhhhhHHHHHHHHHHHhhcCeEEEEEeCC
Q psy9995 152 ITPYEKNLDFWRQLWRVIERSDVIVQIVDAR 182 (595)
Q Consensus 152 ~t~~ern~e~~rql~~vie~sDvVl~VvDAR 182 (595)
.... ....+-.+....++.||++++|+|+.
T Consensus 84 ~ga~-~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 84 PGAH-EGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcc-chhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5332 22234456777899999999999997
No 394
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.57 E-value=9.2e-05 Score=69.76 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=35.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCC--CCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATP--GKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP--G~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
++|++||.+|||||||||++++.. ......| +.+- .+.+..+ -.+.++||||..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 60 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-FRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSH 60 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCC
Confidence 689999999999999999998754 2222222 2111 2222222 246799999975
No 395
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.57 E-value=6.3e-05 Score=70.53 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=36.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.+|+++|.+|||||||+|+++... .+...+.++.+. ..+.++. .+.++||||..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999998543 233334444332 2233332 35689999975
No 396
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.57 E-value=8e-05 Score=70.06 Aligned_cols=56 Identities=21% Similarity=0.128 Sum_probs=35.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
++|++||.+|||||||++.+++..-.. ...+.+.+-....+.++. .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 479999999999999999998643211 112223232222223332 46789999964
No 397
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.57 E-value=0.0005 Score=66.64 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=69.9
Q ss_pred CCCCCCCcCCCHHHHHHHHHH---------Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 112 PRRPKWDKNTTAEQLQAMERD---------EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 112 prRPnw~kst~~n~L~~~Er~---------~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
-.-+++||+++...+...+-. .| ....+. .+.+.||+|-. .+ ..++. ..+..+|+++
T Consensus 6 lG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~--~~---~~~~~---~~~~~a~~ii 77 (182)
T cd04128 6 LGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR--EF---INMLP---LVCNDAVAIL 77 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch--hH---HHhhH---HHCcCCCEEE
Confidence 345667777777776543211 01 112232 34567888842 11 11222 3578899999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCC---H-HH--HHHH-HHHHhhCCCeEEEEecccCCC
Q psy9995 177 QIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLT---R-KQ--RCYW-TKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~---~-~~--~~~w-~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+|+.++.++.+ +..++..+ ......|+|.||+||.. . .+ .... .++.+..+..++.+||+++.+
T Consensus 78 lv~D~t~~~s~~~--i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~ 153 (182)
T cd04128 78 FMFDLTRKSTLNS--IKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSIN 153 (182)
T ss_pred EEEECcCHHHHHH--HHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999988866533 33343332 23334478999999952 1 11 1112 223344467889999998765
No 398
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.56 E-value=0.0004 Score=82.69 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=54.4
Q ss_pred CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 139 RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 139 g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
+..+.|+||||. .++..++...+..+|..|+||||..+.......+.+++. ..++|+|+++||+|++
T Consensus 97 ~~~inliDtPGh--------~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~--~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGH--------VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL--GERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCH--------HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH--HCCCCEEEEEECCccc
Confidence 567789999996 356777788899999999999999887665555555544 4578999999999998
No 399
>KOG0410|consensus
Probab=97.56 E-value=8.4e-05 Score=77.55 Aligned_cols=58 Identities=36% Similarity=0.414 Sum_probs=43.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee---EecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV---SVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv---sVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
....|++|||+|+|||||||+|++.... ..-+|--.|.|.-.+.-+..+.+.||-||+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFi 237 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFI 237 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhh
Confidence 3457999999999999999999943211 122445567776666667788999999997
No 400
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.56 E-value=9.1e-05 Score=70.04 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=34.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|++.+..-... .+|-..-.+. .+.++. .+.++||||..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 4799999999999999999987652211 1221111111 233333 25689999975
No 401
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.56 E-value=1.8e-05 Score=90.40 Aligned_cols=138 Identities=23% Similarity=0.251 Sum_probs=78.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+++++|.+|+|||||++.|+|.. ....+-+.+| |..... ++.+.++.
T Consensus 362 ~~~~ivG~sGsGKSTL~~ll~g~~-----------------~~~~G~i~~~--g~~~~~-------------~~~~~~~~ 409 (585)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVY-----------------DPTVGQILID--GIDINT-------------VTRESLRK 409 (585)
T ss_pred CEEEEECCCCCCHHHHHHHHccCC-----------------CCCCCEEEEC--CEEhhh-------------CCHHHHHh
Confidence 468999999999999999999865 2234445566 433222 23344555
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhh-------hhcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYG-------YNRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a-------~~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...++.++.++ .|+.+.....+..........++++..+. ..+|...+||+.+....||.+++
T Consensus 410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~- 488 (585)
T TIGR01192 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK- 488 (585)
T ss_pred heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc-
Confidence 5555554445556666665 34432111000000000111233333322 23566789999999999999996
Q ss_pred HHhCCceeec-CCCCCChhhhh
Q psy9995 475 FVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
+-+++..- |=-+.|+..-.
T Consensus 489 --~p~ililDEpts~LD~~~~~ 508 (585)
T TIGR01192 489 --NAPILVLDEATSALDVETEA 508 (585)
T ss_pred --CCCEEEEECCccCCCHHHHH
Confidence 56776554 44456654433
No 402
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.56 E-value=0.00052 Score=68.02 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=72.1
Q ss_pred CCCCCCcCCCHHHHHHHHH--H-------Hh----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 113 RRPKWDKNTTAEQLQAMER--D-------EF----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 113 rRPnw~kst~~n~L~~~Er--~-------~f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.-+++||+++...+...+= . .| ..+.+ ..+.+.||+|-. +-..+|+ ..+..+|.+|+
T Consensus 7 G~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe-----~~~~l~~---~y~~~ad~iIl 78 (202)
T cd04120 7 GSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE-----RFNSITS---AYYRSAKGIIL 78 (202)
T ss_pred CcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch-----hhHHHHH---HHhcCCCEEEE
Confidence 3456677777666653210 0 11 23334 345678999942 2122233 35779999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH-----HHHHHHHHHhh-CCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK-----QRCYWTKYFNS-VNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~-----~~~~w~~~~~~-~gi~vi~~SA~~~~~ 244 (595)
|+|+.++.++.. +..|+..+ ..+.|+|||.||+||.... +...|. ++ .+..++.+||+++.+
T Consensus 79 VfDvtd~~Sf~~--l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a---~~~~~~~~~etSAktg~g 150 (202)
T cd04120 79 VYDITKKETFDD--LPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFA---QQITGMRFCEASAKDNFN 150 (202)
T ss_pred EEECcCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHH---HhcCCCEEEEecCCCCCC
Confidence 999998876643 33333322 2457899999999996432 222232 23 256788999999876
No 403
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.56 E-value=0.00063 Score=64.95 Aligned_cols=126 Identities=11% Similarity=0.015 Sum_probs=75.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH--H-------Hh----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER--D-------EF----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er--~-------~f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..++.||+++.+++...+= + .+ ....+ ..+.+.||+|.. +-.. .....+..+|
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~---~~~~~~~~ad 74 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE-----RFKC---IASTYYRGAQ 74 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH-----HHHh---hHHHHhcCCC
Confidence 34556788899999998876421 1 11 11122 235688999952 1111 1233578999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CC-CCcEEEEEeCCCCCCHHHH---H-HHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SP-HKRNMILLNKADLLTRKQR---C-YWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~-~K~~ILVlNK~DLl~~~~~---~-~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++. .+..++.++ .+ ..|+|+|.||+||.+..+. . .-..+..+.+.+++.+||+++.+
T Consensus 75 ~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~ 152 (170)
T cd04108 75 AIIIVFDLTDVASLE--HTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGEN 152 (170)
T ss_pred EEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999998764432 233444432 11 2457999999999654321 1 11122234466788999998866
No 404
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.55 E-value=0.0001 Score=71.35 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=39.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
.++|++||.+|||||||++.+.....+...+|.|.+ +..+.. +-.+.++||||..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~--~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFN--VETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccc--eEEEEECCEEEEEEECCCCH
Confidence 478999999999999999999754444444444533 223333 3467899999974
No 405
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.55 E-value=8.4e-05 Score=84.88 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=45.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CC-ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DD-ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~-~~~liDtPGl~ 378 (595)
+...|+++|.+|+|||||+|+|.+.. +..+..+|.|.++... .. +. .+.++||||..
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 34689999999999999999998754 5556678999886543 33 33 79999999975
No 406
>PLN03110 Rab GTPase; Provisional
Probab=97.55 E-value=9.1e-05 Score=73.79 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=41.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|++||.+||||||||+.|.+.... ....+.|.+.....+.++. .+.|+||||..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3589999999999999999999876532 2234445443334455543 67889999964
No 407
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.54 E-value=0.0001 Score=71.53 Aligned_cols=127 Identities=12% Similarity=0.007 Sum_probs=73.8
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH---------Hhh---hhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD---------EFL---QWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~---------~f~---~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
-|-..++.||+++.+.+...+-. .+. ...+ ..+.+.||+|... + ..+++. .+..+|++
T Consensus 4 vivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~---~~l~~~---~~~~a~~~ 75 (189)
T cd04134 4 VVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEE--F---DRLRSL---SYADTDVI 75 (189)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChh--c---cccccc---cccCCCEE
Confidence 34566788888888887654321 010 0122 3456789999521 1 112222 35789999
Q ss_pred EEEEeCCCCCCCCchH--HHHHHHHhCCCCcEEEEEeCCCCCCHHHHH--------------HHHHHHhhCC-CeEEEEe
Q psy9995 176 VQIVDARNPLLFRCED--LERYVKEVSPHKRNMILLNKADLLTRKQRC--------------YWTKYFNSVN-VAVAFFS 238 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~--Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~--------------~w~~~~~~~g-i~vi~~S 238 (595)
|+|.|..++.++..-. ....+.....+.|+|||.||+||....... .-.+.....+ ..++.+|
T Consensus 76 ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 155 (189)
T cd04134 76 MLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS 155 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999998887653321 112222223467999999999996543211 0111222333 5788899
Q ss_pred cccCCC
Q psy9995 239 ATNIYD 244 (595)
Q Consensus 239 A~~~~~ 244 (595)
|+++.+
T Consensus 156 Ak~~~~ 161 (189)
T cd04134 156 AKLNRG 161 (189)
T ss_pred CCcCCC
Confidence 998876
No 408
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.53 E-value=0.00054 Score=69.48 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=58.4
Q ss_pred eEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCH--
Q psy9995 142 NLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTR-- 217 (595)
Q Consensus 142 ~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~-- 217 (595)
+.|.||+|-. .|. .++ ...+..+|++|+|.|..++.++... .....+....++.|+|||.||+||...
T Consensus 63 l~iwDTaG~e--~~~---~~~---~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 134 (232)
T cd04174 63 LSLWDTSGSP--YYD---NVR---PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLS 134 (232)
T ss_pred EEEEeCCCch--hhH---HHH---HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccc
Confidence 4577999942 111 111 2357899999999999988876431 122223323456789999999998431
Q ss_pred ------------HHHHHHHHHHhhCCC-eEEEEecccCC
Q psy9995 218 ------------KQRCYWTKYFNSVNV-AVAFFSATNIY 243 (595)
Q Consensus 218 ------------~~~~~w~~~~~~~gi-~vi~~SA~~~~ 243 (595)
-......++.++.+. .++.+||+++.
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~ 173 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSE 173 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence 011222334445576 57889999875
No 409
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.52 E-value=9.5e-05 Score=69.71 Aligned_cols=58 Identities=29% Similarity=0.293 Sum_probs=37.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||++.+++.+-.. ..+++|..-....+.++. .+.++||||..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 35899999999999999999998654211 122333321112233332 46788999964
No 410
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.52 E-value=0.0004 Score=68.36 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=60.2
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchH--HHHHHHHhCCCCcEEEEEeCCCCCC-
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCED--LERYVKEVSPHKRNMILLNKADLLT- 216 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~--Le~~lk~v~~~K~~ILVlNK~DLl~- 216 (595)
..+.|.||+|.... .+. ..+..+|++|+|.|..++.++.+-. ....++....+.|+|||.||+||..
T Consensus 66 v~l~iwDTaG~~~~--------~~~--~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~ 135 (195)
T cd01873 66 VSLRLWDTFGDHDK--------DRR--FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEeCCCChhh--------hhc--ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 34568899996421 111 2567999999999999887654321 1222322234678999999999853
Q ss_pred -----------------------HHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 217 -----------------------RKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 217 -----------------------~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.++...|+ ++.|..++.+||+++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a---~~~~~~~~E~SAkt~~~ 183 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVA---KELGIPYYETSVVTQFG 183 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHH---HHhCCEEEEcCCCCCCC
Confidence 22333444 34577889999999876
No 411
>PRK12735 elongation factor Tu; Reviewed
Probab=97.51 E-value=0.0001 Score=80.45 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=43.0
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCc------ceeEecC---------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNA------KKVSVSA---------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~------~kvsVs~---------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
...++|+++|.+|+|||||+|+|++. ..+.... ..|+|.+...... +..+.++||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34589999999999999999999862 2221111 4688888654444 3468999999974
No 412
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.51 E-value=0.00047 Score=67.06 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=58.5
Q ss_pred eEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHH---HHhCCCCcEEEEEeCCCCCCH-
Q psy9995 142 NLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYV---KEVSPHKRNMILLNKADLLTR- 217 (595)
Q Consensus 142 ~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~l---k~v~~~K~~ILVlNK~DLl~~- 217 (595)
+.+.||+|-. .+. .++ ...+..+|++|+|+|..++.++..- +..|+ +...++.|+|||.||+||...
T Consensus 55 l~iwDtaG~e--~~~---~~~---~~~~~~ad~~ilvyDit~~~Sf~~~-~~~w~~~i~~~~~~~piilVgNK~DL~~~~ 125 (182)
T cd04172 55 LSLWDTSGSP--YYD---NVR---PLSYPDSDAVLICFDISRPETLDSV-LKKWKGEIQEFCPNTKMLLVGCKSDLRTDL 125 (182)
T ss_pred EEEEECCCch--hhH---hhh---hhhcCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHHHCCCCCEEEEeEChhhhcCh
Confidence 4578999842 111 111 2256789999999999988765431 13343 333456899999999998431
Q ss_pred -------------HHHHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 218 -------------KQRCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 218 -------------~~~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
-..+.-.++.++.+. .++.+||+++.+
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 166 (182)
T cd04172 126 TTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166 (182)
T ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence 011122233344564 788999998865
No 413
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.50 E-value=0.00012 Score=68.99 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=36.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
++|+++|.+|||||||++.+....... ..|.+.-.+..+.. .-.+.++||||..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc--cCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 479999999999999999996544333 33432222333333 3457899999974
No 414
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.49 E-value=0.00045 Score=66.27 Aligned_cols=127 Identities=13% Similarity=-0.005 Sum_probs=71.9
Q ss_pred cCCCCCCCCcCCCHHHHHHHHH--H----------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMER--D----------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er--~----------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
.|-..++.|||++...+....- + ......+ ..+.+.||+|.. .+ ..+++ ..+..+|++
T Consensus 5 ~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~---~~~~~---~~~~~~d~~ 76 (174)
T cd01871 5 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--DY---DRLRP---LSYPQTDVF 76 (174)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCch--hh---hhhhh---hhcCCCCEE
Confidence 3455677777777665553210 0 0112333 335578999942 11 11222 256789999
Q ss_pred EEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHH-HH-------------HHHHHHhhCC-CeEEEEe
Q psy9995 176 VQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQ-RC-------------YWTKYFNSVN-VAVAFFS 238 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~-~~-------------~w~~~~~~~g-i~vi~~S 238 (595)
|+|+|..++.++..- .....+.....+.|+|||.||+||.+... .. .-.++.++.+ ..++.+|
T Consensus 77 ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 156 (174)
T cd01871 77 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 156 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEec
Confidence 999999988765432 12222332234679999999999954211 10 1111222334 3678899
Q ss_pred cccCCC
Q psy9995 239 ATNIYD 244 (595)
Q Consensus 239 A~~~~~ 244 (595)
|+++.+
T Consensus 157 a~~~~~ 162 (174)
T cd01871 157 ALTQKG 162 (174)
T ss_pred ccccCC
Confidence 999876
No 415
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.49 E-value=0.00011 Score=69.04 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=36.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
..+|+++|.+||||||||+.|.+.. +.....|..+.++. .+.+.. .+.++||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4789999999999999999998543 22122222333332 233332 46788999964
No 416
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.49 E-value=0.00014 Score=68.00 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=35.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
++|+++|.||||||||++.++...-. .. .+.++..+ ..+.++. .+.++||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI-EK-YDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 68999999999999999999865422 11 11222222 2334432 36789999963
No 417
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.48 E-value=0.00048 Score=66.61 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=71.3
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH---------Hh---hhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD---------EF---LQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~---------~f---~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
+-.-+.+||+++.+.+...+-. .+ ..+.+.. +.+.||+|-. .+. ......+..+|++|
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~--~~~------~~~~~~~~~a~~~i 77 (178)
T cd04131 6 VVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSP--YYD------NVRPLCYPDSDAVL 77 (178)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCch--hhh------hcchhhcCCCCEEE
Confidence 3345566777776666543210 00 1223333 4578999842 111 11122567899999
Q ss_pred EEEeCCCCCCCCchHHHHHHH---HhCCCCcEEEEEeCCCCCC-----------------HHHHHHHHHHHhhCCC-eEE
Q psy9995 177 QIVDARNPLLFRCEDLERYVK---EVSPHKRNMILLNKADLLT-----------------RKQRCYWTKYFNSVNV-AVA 235 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~~Le~~lk---~v~~~K~~ILVlNK~DLl~-----------------~~~~~~w~~~~~~~gi-~vi 235 (595)
+|+|..++.++..- +..|+. ...++.|+|||.||+||.+ .++...| .++.+. .++
T Consensus 78 lvfdit~~~Sf~~~-~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~---a~~~~~~~~~ 153 (178)
T cd04131 78 ICFDISRPETLDSV-LKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAI---AKQLGAEIYL 153 (178)
T ss_pred EEEECCChhhHHHH-HHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHH---HHHhCCCEEE
Confidence 99999988776431 233433 3345678999999999843 2222233 334465 688
Q ss_pred EEecccCC
Q psy9995 236 FFSATNIY 243 (595)
Q Consensus 236 ~~SA~~~~ 243 (595)
.+||+++.
T Consensus 154 E~SA~~~~ 161 (178)
T cd04131 154 ECSAFTSE 161 (178)
T ss_pred ECccCcCC
Confidence 89999875
No 418
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=5.6e-05 Score=83.51 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=71.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
=+|+|+|.+|+||||+++.|+|.. ..+.+-+.+. |..... ++-..+++
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~-----------------~~~~G~i~~~--g~~~~~-------------l~~~~~~e 412 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAW-----------------DPQQGSITLN--GVEIAS-------------LDEQALRE 412 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHhcc-----------------CCCCCeeeEC--CcChhh-------------CChhhHHH
Confidence 479999999999999999999855 2222222222 322111 22223444
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.+..+.+-...+..++.+|. .+.+..+..+..........+++++..+.+ .|.-.+||+..+...||.+|+|
T Consensus 413 ~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 413 TISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred HHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 54444444445555555552 222111100000001111233344433221 5667899999999999999994
Q ss_pred HHhCCce-eecCCCCCChhh
Q psy9995 475 FVNGHLL-YCQAPPGVPQEK 493 (595)
Q Consensus 475 ~~~GKL~-~~~~PP~~~~~~ 493 (595)
--+. .-+|--+.|+..
T Consensus 493 ---apl~lLDEPTegLD~~T 509 (573)
T COG4987 493 ---APLWLLDEPTEGLDPIT 509 (573)
T ss_pred ---CCeEEecCCcccCChhh
Confidence 3443 334445566543
No 419
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.48 E-value=0.00011 Score=68.54 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=34.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcce-eE--ecCCCCCceeeEEEEcC----CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKK-VS--VSATPGKTKHFQTLFVD----DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~k-vs--Vs~tPG~TKh~Qti~~~----~~~~liDtPGl~ 378 (595)
++|++||.+|||||||+++|..... .. ...+.|..-....+.++ -.+.++||||..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence 4799999999999999999985421 11 11222222111122221 357899999964
No 420
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.47 E-value=0.00013 Score=69.37 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=35.4
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEc-CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~-~~~~~liDtPGl~ 378 (595)
+|++||.+|||||||+|+|.+.... . +..|..+ ..+.. +-.+.++||||..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCCh
Confidence 4789999999999999999976422 2 2233332 22333 3467899999975
No 421
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.46 E-value=0.00013 Score=70.15 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=35.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcC--C--ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVD--D--ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~--~--~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|.+.+.. ......|....++- .+... . .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 479999999999999999999754 22222232223322 23332 1 46889999964
No 422
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.46 E-value=0.00014 Score=68.99 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=38.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcC---CceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVD---DELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~---~~~~liDtPGl~~ 379 (595)
++|+++|.+|||||||||.++... .....++.|.......+..+ -.+.++||||...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence 379999999999999999998543 22334445544333333322 2578999999753
No 423
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00046 Score=72.87 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=65.5
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCC---CchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLF---RCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~---~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
-.+..|.+.||||- .++-|.+-.=..-||+.|.+||||..+.. +...|..++ +-+.+++.+||+|
T Consensus 83 T~KRkFIiADTPGH--------eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL----GIrhvvvAVNKmD 150 (431)
T COG2895 83 TEKRKFIIADTPGH--------EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL----GIRHVVVAVNKMD 150 (431)
T ss_pred cccceEEEecCCcH--------HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh----CCcEEEEEEeeec
Confidence 34667889999993 23445555556789999999999987753 233333333 4578899999999
Q ss_pred CCCHH--HHHH----HHHHHhhCCC---eEEEEecccCCCC
Q psy9995 214 LLTRK--QRCY----WTKYFNSVNV---AVAFFSATNIYDD 245 (595)
Q Consensus 214 Ll~~~--~~~~----w~~~~~~~gi---~vi~~SA~~~~~~ 245 (595)
|++-. .-.. +..+..+.|+ .+|++||..|.+.
T Consensus 151 Lvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV 191 (431)
T COG2895 151 LVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNV 191 (431)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcc
Confidence 98742 2222 3333344454 6899999998774
No 424
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.44 E-value=0.00041 Score=81.27 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=55.4
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCC
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADL 214 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DL 214 (595)
.+|.+..+.|+||||... +...+...+..+|.+|+|+|+..........+.+.+. ..+.|.|+|+||+|.
T Consensus 81 ~~~~~~~i~liDTPG~~~--------f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~--~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVD--------FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQAL--KENVKPVLFINKVDR 150 (720)
T ss_pred ecCCceEEEEEeCCCccc--------cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHH--HcCCCEEEEEEChhc
Confidence 578899999999999764 2245667889999999999998876555555555443 346788999999998
Q ss_pred CC
Q psy9995 215 LT 216 (595)
Q Consensus 215 l~ 216 (595)
..
T Consensus 151 ~~ 152 (720)
T TIGR00490 151 LI 152 (720)
T ss_pred cc
Confidence 63
No 425
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=8.3e-05 Score=73.87 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=80.6
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhhh
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDH 403 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd~ 403 (595)
..+++|.+|||||||+.+|-+-.- -.||..- .+-+++|---+.-+. +.+-.+|..
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmnd----l~~~~r~--------~G~v~~~g~ni~~~~-------------~d~~~lRr~ 89 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMND----LIPGARV--------EGEVLLDGKNIYDPK-------------VDVVELRRR 89 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcc----cCcCceE--------EEEEEECCeeccCCC-------------CCHHHHHHH
Confidence 359999999999999988876441 1232211 133455522222222 456678888
Q ss_pred hhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHH----------h---hhhcCccccCCCCCHHHHHH
Q psy9995 404 VPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNA----------Y---GYNRGFMTSNGQPDNPRSAR 469 (595)
Q Consensus 404 ~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~----------~---a~~rG~~~~gG~pD~~rAAr 469 (595)
++.|.+-..-||.+++++ .||..+..-.+ . ..+|+++. + -...++-++|||-++.-.||
T Consensus 90 vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~------~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 90 VGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-K------ELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred heeeccCCCCCCchHHHHHHHhHHhhccch-H------HHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 888888888899999998 68876532111 0 11222221 1 11256668999999999999
Q ss_pred HHHHHHHhCCceee-cCCCCCChh
Q psy9995 470 YILKDFVNGHLLYC-QAPPGVPQE 492 (595)
Q Consensus 470 ~iLkD~~~GKL~~~-~~PP~~~~~ 492 (595)
.|- ++=+++.. .|-...||-
T Consensus 163 alA---v~PeVlLmDEPtSALDPI 183 (253)
T COG1117 163 ALA---VKPEVLLMDEPTSALDPI 183 (253)
T ss_pred HHh---cCCcEEEecCcccccCch
Confidence 984 34454433 333334443
No 426
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.44 E-value=0.00013 Score=64.67 Aligned_cols=56 Identities=27% Similarity=0.264 Sum_probs=37.8
Q ss_pred EEEEeecCCCCcchHhhhhcCccee---EecCCCCCceeeEEEEcC---CceEEEeCCCCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKV---SVSATPGKTKHFQTLFVD---DELLLCDCPGLVM 379 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kv---sVs~tPG~TKh~Qti~~~---~~~~liDtPGl~~ 379 (595)
+|.++|.+||||||||+.|++.... ....+.+.|-......+. ..+.+.|++|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 62 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE 62 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence 5899999999999999999987644 223445555554443332 2367899999853
No 427
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.43 E-value=0.00015 Score=68.98 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|+++|.+|||||||+|.+.+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999998643
No 428
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.43 E-value=0.0002 Score=70.25 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=65.2
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH--h---------hh---hc---CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE--F---------LQ---WR---RELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~--f---------~~---wr---g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
+-|-.+++.||||+.|.|.+.+... . .. +. ...+.++||+|+...... ..++.+++ .+..
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~-~~~~l~~~--~~~~ 80 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP-PDDYLEEM--KFSE 80 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC-HHHHHHHh--CccC
Confidence 4566789999999999998754210 0 00 11 124679999998653322 22333332 2567
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT 216 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~ 216 (595)
+|++++|.|. +++..+..+.+.++. .++++++|+||+|+..
T Consensus 81 ~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 81 YDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDL 121 (197)
T ss_pred cCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchh
Confidence 8999998654 455455556666664 3689999999999964
No 429
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.43 E-value=0.00012 Score=76.32 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=34.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEec-CCCC------CceeeEE--EEc-----CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVS-ATPG------KTKHFQT--LFV-----DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs-~tPG------~TKh~Qt--i~~-----~~~~~liDtPGl~ 378 (595)
.++|++||-+|+|||||||+|++....... ..+. .|..++. ..+ .-.+.++||||+-
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfG 74 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFG 74 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcc
Confidence 478999999999999999999997655443 1111 1222222 222 2257899999974
No 430
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.43 E-value=0.00068 Score=67.07 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=60.3
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCC
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLT 216 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~ 216 (595)
..+.+.||+|-. +-..++. ..+..+|++|+|+|+.++.++.. +..|+.++ ..+.|+|||.||+||..
T Consensus 44 ~~l~iwDt~G~e-----~~~~l~~---~~~~~ad~~ilV~D~t~~~S~~~--i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 44 IRFNVWDTAGQE-----KFGGLRD---GYYIQGQCAIIMFDVTARVTYKN--VPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred EEEEEEECCCch-----hhhhhhH---HHhcCCCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 345678999852 1111222 36788999999999988765532 33444333 34679999999999853
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 217 RKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 217 ~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
......-..+....+..++.+||+++.+
T Consensus 114 ~~v~~~~~~~~~~~~~~~~e~SAk~~~~ 141 (200)
T smart00176 114 RKVKAKSITFHRKKNLQYYDISAKSNYN 141 (200)
T ss_pred ccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 2111111223334577899999999876
No 431
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.42 E-value=0.00013 Score=70.72 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=33.9
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee-e-EEEEcCC---ceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-F-QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh-~-Qti~~~~---~~~liDtPGl~ 378 (595)
+|++||.+|||||||+|.|+...-. ...+.++.. + ..+.++. .+.++||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 4899999999999999999865421 122232221 1 1223332 36789999964
No 432
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.42 E-value=0.00027 Score=69.91 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=46.9
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc-CeEEEEEeCCCCCCCCchHHHHHHHHh-------CCCCcEEEE
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS-DVIVQIVDARNPLLFRCEDLERYVKEV-------SPHKRNMIL 208 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s-DvVl~VvDAR~Pl~~~~~~Le~~lk~v-------~~~K~~ILV 208 (595)
+.+..+.|+||||.. .+..++...+..+ +.||+|+|+.+... ...+...++..+ ..+.|++||
T Consensus 45 ~~~~~~~l~D~pG~~--------~~~~~~~~~~~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~~~~~~~pvliv 115 (203)
T cd04105 45 GKGKKFRLVDVPGHP--------KLRDKLLETLKNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLEKVKNKIPVLIA 115 (203)
T ss_pred CCCceEEEEECCCCH--------HHHHHHHHHHhccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHhhccCCCCEEEE
Confidence 346678899999943 1223344556777 99999999987531 122222332211 247899999
Q ss_pred EeCCCCCCH
Q psy9995 209 LNKADLLTR 217 (595)
Q Consensus 209 lNK~DLl~~ 217 (595)
.||+|+...
T Consensus 116 ~NK~Dl~~a 124 (203)
T cd04105 116 CNKQDLFTA 124 (203)
T ss_pred ecchhhccc
Confidence 999999754
No 433
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.41 E-value=0.00019 Score=71.26 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=37.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcC----CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVD----DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~----~~~~liDtPGl~ 378 (595)
++|++||.+|||||||||.|.+.. +.....|-.+-++ ..+.++ -.+.++||||..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~ 61 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS 61 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH
Confidence 479999999999999999998754 2222233333333 223333 256899999964
No 434
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.40 E-value=0.00015 Score=85.23 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=45.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
+...|+++|.+|+|||||+++|.+.. +..+..+|.|.|.....+ +..+.++||||..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 45689999999999999999998754 556677899988654433 4578999999975
No 435
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.39 E-value=0.00019 Score=67.58 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=36.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
++|++||.+|||||||++.+++.. ......|..+.++ ..+.++. .+.++||||..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 368999999999999999998654 2222223222222 2344433 46789999964
No 436
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.38 E-value=0.00046 Score=71.71 Aligned_cols=126 Identities=15% Similarity=0.127 Sum_probs=73.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-----------------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHH
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-----------------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWR 163 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-----------------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~r 163 (595)
|-|-.+++.||||+.|.|...+-. ..+++.|. .+.++||||+-.... +...|+
T Consensus 7 I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~--~~~~~~ 84 (276)
T cd01850 7 IMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN--NSDCWK 84 (276)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc--chhhHH
Confidence 344566778888888887644311 12234443 467999999865321 122222
Q ss_pred HHH---------------HH-----H--hhcCeEEEEEeCCC-CCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHH
Q psy9995 164 QLW---------------RV-----I--ERSDVIVQIVDARN-PLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQR 220 (595)
Q Consensus 164 ql~---------------~v-----i--e~sDvVl~VvDAR~-Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~ 220 (595)
.+. +. + .++|+|++++|+.. .+...+..+.+.+ ....++|+|+||+|+++..++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l---~~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL---SKRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH---hccCCEEEEEECCCcCCHHHH
Confidence 211 11 1 15899999999753 4433333333444 346899999999999986554
Q ss_pred H----HHHHHHhhCCCeEEEEec
Q psy9995 221 C----YWTKYFNSVNVAVAFFSA 239 (595)
Q Consensus 221 ~----~w~~~~~~~gi~vi~~SA 239 (595)
. .+.+.+...+++++.+..
T Consensus 162 ~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 162 KEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHHcCCceECCCC
Confidence 3 344456666777776543
No 437
>PLN03127 Elongation factor Tu; Provisional
Probab=97.38 E-value=0.00021 Score=79.24 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=43.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCc------ceeEec---------CCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNA------KKVSVS---------ATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~------~kvsVs---------~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
...++|+++|.+++|||||+++|++. ....+. ..+|+|.+.-.... +..+.++||||+.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 44689999999999999999999732 211111 12899988655444 3468999999984
No 438
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.38 E-value=0.00025 Score=67.94 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=37.9
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
.++|++||.+|||||||++.+....-. ...|.+..++..+.. .-.+.++||||..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIPTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCCccccceEEEEECCEEEEEEECCCCh
Confidence 488999999999999999999643322 233433333333333 3467899999974
No 439
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.37 E-value=4.9e-05 Score=80.76 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=66.4
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhhh
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDH 403 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd~ 403 (595)
-++++|.+|||||||++.|+|-. .++++-++|| |-.... +|... ..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe-----------------~~~~G~I~i~--g~~vt~-------------l~P~~--R~ 76 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE-----------------EPTSGEILID--GRDVTD-------------LPPEK--RG 76 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-----------------CCCCceEEEC--CEECCC-------------CChhH--CC
Confidence 37899999999999999999966 4455667777 554333 12211 12
Q ss_pred hhhHHHHhhhcCh-hHHHH-HhCCCCCC-CCCCCCCCCCCCHHHH--HHHhhhhcCccccCCCCCHHHHHHHHHHHH
Q psy9995 404 VPAVNMLCTLVPR-HVLEN-IYGIMITQ-PDEGEDPNRPPFSEEL--CNAYGYNRGFMTSNGQPDNPRSARYILKDF 475 (595)
Q Consensus 404 ~~~v~~l~~~i~~-~~le~-~Y~i~~~~-p~~~~~~~~~~~~~e~--L~~~a~~rG~~~~gG~pD~~rAAr~iLkD~ 475 (595)
++.|.+---++|. ++.+| .|++.... +.. +...+...+.++ |+.+..++-.-++|||.++.+.||+|+++=
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~-ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKA-EIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchH-HHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 3344333345555 56666 46654421 110 000000001111 122333344557999999999999998763
No 440
>PTZ00369 Ras-like protein; Provisional
Probab=97.36 E-value=0.00022 Score=69.15 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=37.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||++++.+.... ...+|.|.+.. ..+.++. .+.++||||..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCc
Confidence 479999999999999999999975422 22233332221 1233333 35689999975
No 441
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.36 E-value=0.00022 Score=70.86 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=37.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC----CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD----DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~----~~~~liDtPGl~ 378 (595)
++|+++|.+|||||||||.|++..-... ..|.++.++. .+.+. -.+.++||||..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 6899999999999999999997653222 2344444443 23332 247899999964
No 442
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.35 E-value=0.00027 Score=68.41 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=39.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
.++|.++|.+|||||||++.+....-+...+|.|. ++..+.. +-.+.++||||-.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~--~~~~~~~~~~~~~i~D~~Gq~ 72 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNISFTVWDVGGQD 72 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccccCCcce--eEEEEEECCEEEEEEECCCCH
Confidence 47899999999999999999986543444444453 3333433 3468899999963
No 443
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.35 E-value=0.00087 Score=72.98 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=72.0
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
-...|.+..+.++||||--+ | =-...|++..+|-||++|||.......-..+.+.. +..+-+.|+|+||+
T Consensus 61 Tav~~~~~~INIvDTPGHAD--F------GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKA--l~~gL~PIVVvNKi 130 (603)
T COG1217 61 TAVNYNGTRINIVDTPGHAD--F------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKA--LALGLKPIVVINKI 130 (603)
T ss_pred ceeecCCeEEEEecCCCcCC--c------cchhhhhhhhcceEEEEEEcccCCCCchhhhHHHH--HHcCCCcEEEEeCC
Confidence 56789999999999999432 2 23355688999999999999876654444433322 23567889999999
Q ss_pred CCCC---HHHHHHHHHHHhhC-------CCeEEEEecccCCCC
Q psy9995 213 DLLT---RKQRCYWTKYFNSV-------NVAVAFFSATNIYDD 245 (595)
Q Consensus 213 DLl~---~~~~~~w~~~~~~~-------gi~vi~~SA~~~~~~ 245 (595)
|.-. .+...+..+.|-.. .+++++-|++.|...
T Consensus 131 Drp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 131 DRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 9853 23344444445443 468999999988653
No 444
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.34 E-value=0.00015 Score=75.12 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=37.5
Q ss_pred EEEEeecCCCCcchHhhhhcCcce-----eEec------------CCCCCceeeEEEE---cCCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKK-----VSVS------------ATPGKTKHFQTLF---VDDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~k-----vsVs------------~tPG~TKh~Qti~---~~~~~~liDtPGl~ 378 (595)
+|+++|.+|+|||||+|+|+.... -.|+ ...|+|.+..... -+..+.++||||..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH
Confidence 389999999999999999973211 1122 1347776643322 25578999999975
No 445
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.34 E-value=0.0003 Score=70.33 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=42.6
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
...++|++||.+|||||||++.++... .-...+|.|.+.+...+..+ -.+.++||||..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 446899999999999999999976433 23456667766554444332 367899999975
No 446
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00012 Score=76.23 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=84.5
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhhh
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDH 403 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd~ 403 (595)
..|+||++|+||||||..|-+-. ..+.+-+++| |-....+ +. .++-++|..
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le-----------------~PtsG~v~v~--G~di~~l--~~--------~~Lr~~R~~ 84 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLE-----------------RPTSGSVFVD--GQDLTAL--SE--------AELRQLRQK 84 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccC-----------------CCCCceEEEc--CEecccC--Ch--------HHHHHHHhh
Confidence 37999999999999998887644 3355667788 6332221 11 234566677
Q ss_pred hhhHHHHhhhcC-hhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-----cCccccCCCCCHHHHHHHHHHHHH
Q psy9995 404 VPAVNMLCTLVP-RHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-----RGFMTSNGQPDNPRSARYILKDFV 476 (595)
Q Consensus 404 ~~~v~~l~~~i~-~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-----rG~~~~gG~pD~~rAAr~iLkD~~ 476 (595)
++.+.+...++. +++.++ .|.+.+..-. ......-..|+|+.++-. .-.-++|||.++...||++..
T Consensus 85 IGMIFQhFnLLssrTV~~NvA~PLeiag~~---k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~--- 158 (339)
T COG1135 85 IGMIFQHFNLLSSRTVFENVAFPLELAGVP---KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN--- 158 (339)
T ss_pred ccEEeccccccccchHHhhhhhhHhhcCCC---HHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc---
Confidence 777666666665 567766 4555443210 000111234566654322 223478999999999999965
Q ss_pred hCCceeecCCCC-CChhhhh
Q psy9995 477 NGHLLYCQAPPG-VPQEKYH 495 (595)
Q Consensus 477 ~GKL~~~~~PP~-~~~~~f~ 495 (595)
+=+++.|--|-+ .||..-+
T Consensus 159 ~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 159 NPKILLCDEATSALDPETTQ 178 (339)
T ss_pred CCCEEEecCccccCChHHHH
Confidence 568999965543 5666555
No 447
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.34 E-value=0.00012 Score=65.06 Aligned_cols=53 Identities=30% Similarity=0.259 Sum_probs=33.1
Q ss_pred EeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEc---CCceEEEeCCCCcc
Q psy9995 327 LVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFV---DDELLLCDCPGLVM 379 (595)
Q Consensus 327 lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~ 379 (595)
++|.+|+|||||+|+|.+.... ......+.....-.+.. ...+.++||||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence 5899999999999999987642 11111111111111121 45689999999763
No 448
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.34 E-value=0.00042 Score=81.36 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=51.4
Q ss_pred cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 138 RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 138 rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
.+..+.|+||||... +...+.+.+..+|.+|+|+|+..........+.+.+. ..+.|.|+++||+|+.
T Consensus 85 ~~~~i~liDtPG~~d--------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~--~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 85 KEYLINLIDTPGHVD--------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL--RERVKPVLFINKVDRL 152 (731)
T ss_pred CcEEEEEEcCCCccC--------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH--HcCCCeEEEEECchhh
Confidence 367788999999764 3456777889999999999998776554444444433 3456889999999986
No 449
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.33 E-value=0.00022 Score=69.79 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=36.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcC-C---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVD-D---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~-~---~~~liDtPGl~ 378 (595)
++|++||.+|||||||+|.+++..-. ...+|.|..-....+.++ . .+.++||||..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 47999999999999999999875311 112222322222334443 1 46899999974
No 450
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.33 E-value=0.0002 Score=67.72 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=35.0
Q ss_pred EEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcCC---ceEEEeCCCCc
Q psy9995 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 325 i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~~---~~~liDtPGl~ 378 (595)
|+++|.+|||||||+|.+++.. ....-.|.....+. .+.++. .+.++||||..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 5799999999999999999754 22222333222222 233333 47899999975
No 451
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.33 E-value=0.00028 Score=80.31 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=75.8
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh--hhhHHHHHHHHHHHhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY--EKNLDFWRQLWRVIER 171 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~--ern~e~~rql~~vie~ 171 (595)
++-+-.+|++|||++.|.|.+.... ....|.|..+.|+||||+..+.. ..+.++.+.+.+.++.
T Consensus 120 rIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk 199 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKK 199 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhc
Confidence 3566799999999999999987643 12345678889999999987632 2455677777777774
Q ss_pred --cCeEEEEEeCCCCCCC-CchHHHHHHHHhC---CCCcEEEEEeCCCCCCH
Q psy9995 172 --SDVIVQIVDARNPLLF-RCEDLERYVKEVS---PHKRNMILLNKADLLTR 217 (595)
Q Consensus 172 --sDvVl~VvDAR~Pl~~-~~~~Le~~lk~v~---~~K~~ILVlNK~DLl~~ 217 (595)
+|+||+|.....-... .+..+.+.+.++- .-+..|||++..|.+++
T Consensus 200 ~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 200 NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 8999998765321111 1222334444332 24678999999999974
No 452
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.32 E-value=0.00022 Score=71.40 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=36.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCccee-EecCCCC-CceeeEEEEc---CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKV-SVSATPG-KTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG-~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
++|++||.+|||||||++.++...-. .....++ .+....++.+ +..+.++||||..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 37999999999999999999754322 2222222 1222333443 3457899999985
No 453
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.32 E-value=0.0004 Score=73.10 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=72.2
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH---Hh-----------hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh-
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD---EF-----------LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE- 170 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~---~f-----------~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie- 170 (595)
.-++-|-.++++|||++.|.|.+.+.. .| ..+.|..+.++||||+..... .+.+....+...+.
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~-~~e~~~~~ik~~l~~ 116 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY-INDQAVNIIKRFLLG 116 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHH-HHHHHHHHHHHHhhc
Confidence 345667789999999999999987642 12 235777899999999886532 22233333332222
Q ss_pred -hcCeEEEEEeCCCC-CCCCchHHHHHHHHhC---CCCcEEEEEeCCCCCCHH
Q psy9995 171 -RSDVIVQIVDARNP-LLFRCEDLERYVKEVS---PHKRNMILLNKADLLTRK 218 (595)
Q Consensus 171 -~sDvVl~VvDAR~P-l~~~~~~Le~~lk~v~---~~K~~ILVlNK~DLl~~~ 218 (595)
..|+||+|...... ....+..+.+.+..+- ..++.|+|++++|.++++
T Consensus 117 ~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 117 KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 58999999543221 2223344555555442 236799999999988653
No 454
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.32 E-value=0.0002 Score=67.29 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=35.4
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCce--eeEEEEcCC---ceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK--HFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TK--h~Qti~~~~---~~~liDtPGl~ 378 (595)
+|++||.+||||||||++++...- +...+.++. ....+.++. .+.++||||..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 58 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQ 58 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCc
Confidence 489999999999999999986431 233333332 122233433 36799999986
No 455
>PLN03108 Rab family protein; Provisional
Probab=97.31 E-value=0.00029 Score=69.78 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=38.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|++||.+|||||||+|.|++..-... ..+.|.+.....+.++. .+.++||||..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 47899999999999999999997542221 22334433333344432 46799999965
No 456
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.31 E-value=0.00018 Score=83.80 Aligned_cols=57 Identities=14% Similarity=0.327 Sum_probs=43.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEE--c-----CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLF--V-----DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~--~-----~~~~~liDtPGl~ 378 (595)
+...|+++|++|+|||||+++|++.. +..+..+|.|.++..+. + +..+.++||||..
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 34679999999999999999998754 44566788988754322 1 2578999999974
No 457
>PRK00049 elongation factor Tu; Reviewed
Probab=97.30 E-value=0.00025 Score=77.45 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=43.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc------eeEecC---------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK------KVSVSA---------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~------kvsVs~---------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
..++|+++|.+++|||||+++|++.. .....+ .+|+|.+...... +..+.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 45899999999999999999998631 111111 5789988655444 4568999999974
No 458
>KOG1145|consensus
Probab=97.30 E-value=0.00072 Score=74.86 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=81.5
Q ss_pred cCCcccCCCCCCC--------CcCCCHHHHHHHHHH------------Hh---hhhcCeeeEEEeCCCcccChhhhhHHH
Q psy9995 105 KRELLKIPRRPKW--------DKNTTAEQLQAMERD------------EF---LQWRRELNLLQEEDGLVITPYEKNLDF 161 (595)
Q Consensus 105 ~~~~l~iprRPnw--------~kst~~n~L~~~Er~------------~f---~~wrg~~~~L~DT~Gi~~t~~ern~e~ 161 (595)
-.+.+--||.|-+ ||.|+++.|.+..-+ +| +. .|..+.|.||||-. -|.
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHa--AF~----- 215 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHA--AFS----- 215 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHH--HHH-----
Confidence 3344555654443 889998888766544 22 22 57788999999932 121
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCC---------C
Q psy9995 162 WRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVN---------V 232 (595)
Q Consensus 162 ~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~g---------i 232 (595)
..-.|=..-.|+||+||.|.+.....--+-.+..+ +.+-|+|+.+||+|--. .........+.+.| +
T Consensus 216 -aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk--~A~VpiVvAinKiDkp~-a~pekv~~eL~~~gi~~E~~GGdV 291 (683)
T KOG1145|consen 216 -AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAK--SANVPIVVAINKIDKPG-ANPEKVKRELLSQGIVVEDLGGDV 291 (683)
T ss_pred -HHHhccCccccEEEEEEEccCCccHhHHHHHHHHH--hcCCCEEEEEeccCCCC-CCHHHHHHHHHHcCccHHHcCCce
Confidence 11123455689999999999887643333334444 56889999999999632 12222233333333 3
Q ss_pred eEEEEecccCCCC
Q psy9995 233 AVAFFSATNIYDD 245 (595)
Q Consensus 233 ~vi~~SA~~~~~~ 245 (595)
.++.+||+++.+.
T Consensus 292 QvipiSAl~g~nl 304 (683)
T KOG1145|consen 292 QVIPISALTGENL 304 (683)
T ss_pred eEEEeecccCCCh
Confidence 6899999999874
No 459
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.0017 Score=70.92 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=62.2
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC--CH
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL--TR 217 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl--~~ 217 (595)
..+.|+||||-.+-.+|. .|.+..|.=.|+||||....- -.-|...-..++.+-.+|-|+||+||- ++
T Consensus 76 Y~lnlIDTPGHVDFsYEV--------SRSLAACEGalLvVDAsQGve--AQTlAN~YlAle~~LeIiPViNKIDLP~Adp 145 (603)
T COG0481 76 YVLNLIDTPGHVDFSYEV--------SRSLAACEGALLVVDASQGVE--AQTLANVYLALENNLEIIPVLNKIDLPAADP 145 (603)
T ss_pred EEEEEcCCCCccceEEEe--------hhhHhhCCCcEEEEECccchH--HHHHHHHHHHHHcCcEEEEeeecccCCCCCH
Confidence 567899999977655553 345677888899999987653 223433333456778899999999994 33
Q ss_pred HHHH-HHHHHHhhCCC---eEEEEecccCCC
Q psy9995 218 KQRC-YWTKYFNSVNV---AVAFFSATNIYD 244 (595)
Q Consensus 218 ~~~~-~w~~~~~~~gi---~vi~~SA~~~~~ 244 (595)
+... ++.+.+ |+ ..+.+||++|.|
T Consensus 146 ervk~eIe~~i---Gid~~dav~~SAKtG~g 173 (603)
T COG0481 146 ERVKQEIEDII---GIDASDAVLVSAKTGIG 173 (603)
T ss_pred HHHHHHHHHHh---CCCcchheeEecccCCC
Confidence 3322 222222 55 568899999876
No 460
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.28 E-value=0.00021 Score=67.05 Aligned_cols=47 Identities=30% Similarity=0.316 Sum_probs=33.7
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
+|++||.+++|||||+++|.+... ...+| |.+..... .|||||=.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KT---q~i~~~~~--~IDTPGEyiE 49 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKT---QAIEYYDN--TIDTPGEYIE 49 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCcc---ceeEeccc--EEECChhhee
Confidence 689999999999999999998541 22334 44443333 4999996644
No 461
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.28 E-value=0.00021 Score=81.56 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=38.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCC-CCceeeEEEE--cC-------------------CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATP-GKTKHFQTLF--VD-------------------DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP-G~TKh~Qti~--~~-------------------~~~~liDtPGl~ 378 (595)
..|+++|.+|+|||||||+|++.. + ++..| |+|.|..... .+ .++.++||||..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~-v-~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSA-V-AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc-c-ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 468999999999999999999864 3 23444 4777632211 10 248899999974
No 462
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.28 E-value=0.00031 Score=67.09 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=35.9
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC---CceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~---~~~~liDtPGl~ 378 (595)
+|++||.+|||||||++++++.. ..-.-.|-....++ .+.+. -.+.++||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999999753 21111232223333 23332 257899999975
No 463
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.26 E-value=0.00017 Score=69.53 Aligned_cols=132 Identities=20% Similarity=0.179 Sum_probs=79.4
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
...++-|-.-++.||+|..+.|...+-. ....+.+..+.+.|-+|-. ....+|+. .+..+|.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~-----~~~~~w~~---y~~~~~~ 84 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQE-----SFRPLWKS---YFQNADG 84 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSG-----GGGGGGGG---GHTTESE
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccc-----ccccccee---eccccce
Confidence 3445666677888888888888643211 2344566777777877731 11123444 5678999
Q ss_pred EEEEEeCCCCCCCC--chHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHh------hCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFR--CEDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFN------SVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~--~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~------~~gi~vi~~SA~~~~~ 244 (595)
||+|+|+.++.... ...|...+..- -.++|++|++||.|+...........++. ...+.++.+||.++.|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 99999998764211 11222222210 13689999999999865333333444432 2234577789988876
No 464
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.26 E-value=0.001 Score=63.81 Aligned_cols=126 Identities=12% Similarity=0.016 Sum_probs=71.9
Q ss_pred CCCCCCCCcCCCHHHHHHHH--HH-------H---hhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 111 IPRRPKWDKNTTAEQLQAME--RD-------E---FLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~E--r~-------~---f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
|-.-++.||+++...+.... .. . ...+.+. .+.+.||+|... + ..++. ..+..+|++|
T Consensus 6 vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~---~~~~~---~~~~~a~~~i 77 (175)
T cd01874 6 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED--Y---DRLRP---LSYPQTDVFL 77 (175)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc--h---hhhhh---hhcccCCEEE
Confidence 34456677777776665321 00 0 1123343 345789999532 1 11121 2567899999
Q ss_pred EEEeCCCCCCCCchH--HHHHHHHhCCCCcEEEEEeCCCCCCHHHH-------------HHHHH-HHhhCC-CeEEEEec
Q psy9995 177 QIVDARNPLLFRCED--LERYVKEVSPHKRNMILLNKADLLTRKQR-------------CYWTK-YFNSVN-VAVAFFSA 239 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~~--Le~~lk~v~~~K~~ILVlNK~DLl~~~~~-------------~~w~~-~~~~~g-i~vi~~SA 239 (595)
+|+|..++.++.... +...+.....+.|+|||.||+|+.+.... .+... +.++.+ ..++.+||
T Consensus 78 lv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 78 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 999999887654321 22223322346799999999998653211 01111 112234 57889999
Q ss_pred ccCCC
Q psy9995 240 TNIYD 244 (595)
Q Consensus 240 ~~~~~ 244 (595)
+++.+
T Consensus 158 ~tg~~ 162 (175)
T cd01874 158 LTQKG 162 (175)
T ss_pred CCCCC
Confidence 99876
No 465
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.25 E-value=0.0023 Score=77.16 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=44.2
Q ss_pred eEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC
Q psy9995 142 NLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT 216 (595)
Q Consensus 142 ~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~ 216 (595)
+.|+||||. ..| .....+....+|++++|+|+.+++..........+. ..+.|+|+|+||+|+.+
T Consensus 528 i~fiDTPGh--e~F------~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk--~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGH--EAF------TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILR--QYKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCc--HHH------HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHH--HcCCCEEEEEECCCCcc
Confidence 689999993 122 111223456799999999998765443333334444 34689999999999975
No 466
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.24 E-value=0.00023 Score=73.24 Aligned_cols=22 Identities=45% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEeecCCCCcchHhhhhcCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~ 345 (595)
+|+++|.+|+|||||+|+|+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999999999853
No 467
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.23 E-value=0.00043 Score=65.45 Aligned_cols=55 Identities=22% Similarity=0.189 Sum_probs=35.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.+|+++|.+|||||||++.+.+..-.. ..++.+... ...+.++. .+.++||||..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCch
Confidence 479999999999999999999754211 112222111 12233332 46899999974
No 468
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.23 E-value=0.00074 Score=66.84 Aligned_cols=128 Identities=12% Similarity=0.096 Sum_probs=78.7
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHH-HHH--------h------hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAME-RDE--------F------LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~E-r~~--------f------~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+.+-..+..||+|+.+.+...+ ... + ..-....+.+.||+|... + ..++ ...+..
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~--~---~~~~---~~~~~~ 81 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK--F---GGLR---DGYYIK 81 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchh--h---hhhh---HHHhcc
Confidence 356677888999999987654321 110 0 011335667889998421 1 1111 224567
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHH---hCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKE---VSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~---v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|.+++|+|..+..++ ..+..++.. ...+.|+++|.||+|+...........+....+..++.+||+++.+
T Consensus 82 ~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 82 GQCAIIMFDVTSRITY--KNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYN 155 (215)
T ss_pred CCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 8999999999877654 223333332 2346788999999998654322233344455577889999998776
No 469
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.23 E-value=0.0021 Score=60.50 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 111 IPRRPKWDKNTTAEQLQAMERD---------EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 111 iprRPnw~kst~~n~L~~~Er~---------~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
+-..|+.||+++.+.+...+=. .+ +...+. .+.+.||+|... + ..++ ...+..+|.+
T Consensus 5 vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--~---~~~~---~~~~~~~~~~ 76 (161)
T cd04117 5 LIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER--Y---QTIT---KQYYRRAQGI 76 (161)
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHh--H---HhhH---HHHhcCCcEE
Confidence 4456788888888777643211 01 112232 345678888421 1 1122 2356789999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh---C-CCCcEEEEEeCCCCCCHH-----HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV---S-PHKRNMILLNKADLLTRK-----QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v---~-~~K~~ILVlNK~DLl~~~-----~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|..++.++. .+..|+..+ . .+.|+++|.||+||.... +...+. +..+.+++.+||+++.+
T Consensus 77 i~v~d~~~~~sf~--~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~Sa~~~~~ 149 (161)
T cd04117 77 FLVYDISSERSYQ--HIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLA---KEYGMDFFETSACTNSN 149 (161)
T ss_pred EEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHH---HHcCCEEEEEeCCCCCC
Confidence 9999998876542 344554433 2 356899999999996432 222332 33456788999998765
No 470
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.23 E-value=0.0017 Score=63.23 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=57.4
Q ss_pred eeEEEeCCCcccChhhhhHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCC
Q psy9995 141 LNLLQEEDGLVITPYEKNLDFWRQLW-RVIERSDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLT 216 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~~ern~e~~rql~-~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~ 216 (595)
.+.+.||+|-. + ++.++ ..+..+|++|+|.|..++.++..-. ..++.++ ..+.|+|||.||+||..
T Consensus 52 ~l~i~Dt~G~e-----~----~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~-~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 52 SLNLWDTAGQE-----E----YDRLRTLSYPQTNVFIICFSIASPSSYENVR-HKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred EEEEEECCCch-----h----hhhhhhhhccCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 35678999942 1 22233 2467899999999999887754321 1233222 35689999999999954
Q ss_pred HHH-H-------------HHHHHHHhhCC-CeEEEEecccCCC
Q psy9995 217 RKQ-R-------------CYWTKYFNSVN-VAVAFFSATNIYD 244 (595)
Q Consensus 217 ~~~-~-------------~~w~~~~~~~g-i~vi~~SA~~~~~ 244 (595)
... . ..-..+.++.+ ..++.+||+++.+
T Consensus 122 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~ 164 (191)
T cd01875 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG 164 (191)
T ss_pred ChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 211 0 01111222335 4788899998766
No 471
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.22 E-value=0.00018 Score=82.99 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEe
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSV 350 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsV 350 (595)
..++|++||.+|+|||||+|.|+....+.+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~ 52 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIF 52 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcC
Confidence 458999999999999999999997655444
No 472
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.00012 Score=74.18 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
-|++||.+|||||||+|.|.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999865
No 473
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.21 E-value=0.0003 Score=70.68 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=36.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
++|++||.+|||||||++.++...-....+|-|. ++..... .-.+.++||||..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~--~~~~~~~~~~~l~iwDt~G~e 55 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGG--AFYLKQWGPYNISIWDTAGRE 55 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccce--EEEEEEeeEEEEEEEeCCCcc
Confidence 4789999999999999999997653222223232 2222222 2357899999975
No 474
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.20 E-value=0.00029 Score=80.50 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=40.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc--eeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK--KVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~--kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
+.|+++|.+|+|||||+|+|++.. .......+|+|.++.. +.. +..+.++||||..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe 61 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE 61 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH
Confidence 368999999999999999999743 1122234688887654 333 3467899999964
No 475
>KOG1486|consensus
Probab=97.20 E-value=0.0003 Score=71.15 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=42.0
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EE-cCCceEEEeCCCCccCC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LF-VDDELLLCDCPGLVMPS 381 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~-~~~~~~liDtPGl~~p~ 381 (595)
.+.-+|+++|+|.||||||+..|+..+ ....+.-.+|-..-. +. -+..++++|-|||+...
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGA 123 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGA 123 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCccccccc
Confidence 345789999999999999999999754 122222233333221 22 26789999999999543
No 476
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.19 E-value=0.00043 Score=75.44 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=42.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCc------ceeEecC---------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNA------KKVSVSA---------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~------~kvsVs~---------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
..++|+++|.+++|||||+++|++. ....... ..|+|.+...+.+ +..+.++||||..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 4589999999999999999999842 1121111 2789988765554 3458999999975
No 477
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.18 E-value=0.0017 Score=62.90 Aligned_cols=92 Identities=18% Similarity=0.144 Sum_probs=59.6
Q ss_pred eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCC-
Q psy9995 141 LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLT- 216 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~- 216 (595)
.+.+.||+|.. .+.. + ....+..+|.+|+|.|..++.++.+- +..|+.++ ..+.|+|||.||+||.+
T Consensus 50 ~l~i~Dt~G~~--~~~~---~---~~~~~~~a~~~ilvyd~~~~~Sf~~~-~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 50 NLGLWDTAGQE--DYNR---L---RPLSYRGADVFVLAFSLISRASYENV-LKKWVPELRHYAPNVPIVLVGTKLDLRDD 120 (176)
T ss_pred EEEEEECCCCc--cccc---c---chhhcCCCcEEEEEEEcCCHHHHHHH-HHHHHHHHHHhCCCCCEEEEEeChhhccC
Confidence 34577999942 1111 1 11256799999999999988876442 13444433 45678999999999953
Q ss_pred --------------HHHHHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 217 --------------RKQRCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 217 --------------~~~~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
.++...|++ +.+. .++.+||+++.+
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~a~---~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 121 KQYLADHPGASPITTAQGEELRK---QIGAAAYIECSSKTQQN 160 (176)
T ss_pred hhhhhhccCCCCCCHHHHHHHHH---HcCCCEEEECCCCcccC
Confidence 223344443 3455 578899998876
No 478
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.18 E-value=0.0021 Score=64.74 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=55.5
Q ss_pred eEEEeCCCcccChhhhhHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCH-
Q psy9995 142 NLLQEEDGLVITPYEKNLDFWRQLW-RVIERSDVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTR- 217 (595)
Q Consensus 142 ~~L~DT~Gi~~t~~ern~e~~rql~-~vie~sDvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~- 217 (595)
+.|.||+|-. .| +.++ ..+..+|++|+|+|..++.++.+- .+...+....++.|+|||.||+||...
T Consensus 51 L~iwDt~G~e--~~-------~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 51 LNMWDTSGSS--YY-------DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred EEEEeCCCcH--HH-------HHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 4567999842 11 2222 256799999999999988665332 111222222456899999999999542
Q ss_pred ----------------HHHHHHHHHHhhCC-CeEEEEecccCC
Q psy9995 218 ----------------KQRCYWTKYFNSVN-VAVAFFSATNIY 243 (595)
Q Consensus 218 ----------------~~~~~w~~~~~~~g-i~vi~~SA~~~~ 243 (595)
++...|+ ++.| ..++.+||+++.
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~a---k~~~~~~y~E~SAk~~~ 161 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLA---KQVGAVSYVECSSRSSE 161 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHH---HHcCCCEEEEcCCCcCC
Confidence 2222232 2335 378889998765
No 479
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.16 E-value=0.00047 Score=69.42 Aligned_cols=56 Identities=25% Similarity=0.457 Sum_probs=39.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCc-ceeEecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNA-KKVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~-~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
.+..|++||.||+|||||+|+|++. ....++...|+. .+ ...-+..+.++||||..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence 3567999999999999999999975 233455556641 11 11235678999999854
No 480
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.15 E-value=0.0006 Score=65.22 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||++.+....- .-...|-..-.++ .+.++. .+.++||||..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQA 61 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence 36899999999999999999986542 1111121112222 234432 47789999964
No 481
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.15 E-value=0.0015 Score=63.29 Aligned_cols=126 Identities=17% Similarity=0.044 Sum_probs=71.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------H---hhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------E---FLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~---f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.|-..+..|||++.+.+....-. . -..+.+.. +.+.||+|... +.. .+. ..+..+|
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~----~~~--~~~~~a~ 74 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE--YER----LRP--LSYSKAH 74 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChh--ccc----cch--hhcCCCC
Confidence 3455667788888888887632110 0 11223322 35679998532 111 111 1357899
Q ss_pred eEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCH---------------HHHHHHHHHHhhCCC-eEE
Q psy9995 174 VIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTR---------------KQRCYWTKYFNSVNV-AVA 235 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~---------------~~~~~w~~~~~~~gi-~vi 235 (595)
+++.+.|..++.++..- .....+.......|+|||.||+|+.+. +....|.+ ..+. .++
T Consensus 75 ~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 151 (187)
T cd04129 75 VILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAK---EIGAKKYM 151 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHH---HhCCcEEE
Confidence 99999999776654321 112222222346899999999998531 11222332 3353 688
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 152 e~Sa~~~~~ 160 (187)
T cd04129 152 ECSALTGEG 160 (187)
T ss_pred EccCCCCCC
Confidence 899988765
No 482
>KOG1547|consensus
Probab=97.14 E-value=0.00032 Score=70.56 Aligned_cols=57 Identities=30% Similarity=0.431 Sum_probs=37.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCC------CceeeE--EEEc-----CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG------KTKHFQ--TLFV-----DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG------~TKh~Q--ti~~-----~~~~~liDtPGl~ 378 (595)
...|++||.+|.||||+||+|...+....+..|+ +|.... +-.+ .-.+.++||||+-
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 4789999999999999999999765433233332 122211 1111 2357899999975
No 483
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.13 E-value=0.00045 Score=67.54 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=35.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
+|++||.+|||||||++++++..-. ...+.++..+. .+.+.. .+.++||||..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 4899999999999999999875522 22222322222 223332 57799999965
No 484
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.12 E-value=0.00036 Score=70.85 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=35.5
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeE-----ec------C------CCCCceeeEEE---EcCCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVS-----VS------A------TPGKTKHFQTL---FVDDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvs-----Vs------~------tPG~TKh~Qti---~~~~~~~liDtPGl~ 378 (595)
+|+++|.+|+|||||+++|+....+. |. + .-|.|.+.... .-+..+.++||||..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~ 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc
Confidence 37999999999999999998643211 11 1 11333332222 124578999999985
No 485
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.12 E-value=0.00061 Score=64.57 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=35.6
Q ss_pred EEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 325 IGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 325 i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
|+++|.+|||||||++.+.+..- ....+|.|.. +..+.. +-.+.++||||-.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCc
Confidence 78999999999999999997532 1223444532 222222 3467899999964
No 486
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.12 E-value=0.0005 Score=78.67 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=38.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCC-CCceeeEEEEc--C-------------------CceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATP-GKTKHFQTLFV--D-------------------DELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP-G~TKh~Qti~~--~-------------------~~~~liDtPGl~ 378 (595)
...|+++|.+|+|||||+|+|.+.. -++..| |.|.|...... + .++.++||||..
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 4579999999999999999998754 234444 45666321110 0 137899999985
No 487
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.11 E-value=0.00056 Score=67.64 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=36.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-----CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-----DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-----~~~~~liDtPGl~ 378 (595)
+|.++|.+|||||||++.|.......+ .+.++-....+.. +..+.|+||||..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 589999999999999999997642211 1222233333332 4568999999975
No 488
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.09 E-value=0.00011 Score=91.90 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=45.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEE-eCCCCccCCcccchhHHHHhcCCchhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLC-DCPGLVMPSFVFSKADMILNGILPIDQMR 401 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~li-DtPGl~~p~f~~tk~eli~~gil~id~lr 401 (595)
-+++|||.+|+|||||++.|+|.. ..+.+-+++ | |..... ++...+|
T Consensus 412 e~vaIvG~SGsGKSTLl~lL~gl~-----------------~p~~G~I~i~~--g~~i~~-------------~~~~~lr 459 (1466)
T PTZ00265 412 KTYAFVGESGCGKSTILKLIERLY-----------------DPTEGDIIIND--SHNLKD-------------INLKWWR 459 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc-----------------cCCCCeEEEeC--Ccchhh-------------CCHHHHH
Confidence 468999999999999999999865 334455566 3 322111 2344556
Q ss_pred hhhhhHHHHhhhcChhHHHH-HhC
Q psy9995 402 DHVPAVNMLCTLVPRHVLEN-IYG 424 (595)
Q Consensus 402 d~~~~v~~l~~~i~~~~le~-~Y~ 424 (595)
..++.|.+-...++.++.++ .||
T Consensus 460 ~~Ig~V~Q~~~LF~~TI~eNI~~g 483 (1466)
T PTZ00265 460 SKIGVVSQDPLLFSNSIKNNIKYS 483 (1466)
T ss_pred HhccEecccccchhccHHHHHHhc
Confidence 66666665555666667776 455
No 489
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.07 E-value=0.00083 Score=66.45 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=38.8
Q ss_pred CceEEEEeecCCCCcchHhhh-hcCcceeEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINA-LLNAKKVSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~-L~~~~kvsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||++. +.+...-...++.|...+.-.+..+. .+.++||||..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 458999999999999999975 55543333445555544433333332 56789999964
No 490
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.06 E-value=0.00025 Score=78.08 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=86.3
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhhh
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDH 403 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd~ 403 (595)
-++|||.+++|||||...|.|.- ....+.+-+| |-.... .+-+++-.|
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w-----------------~p~~G~VRLD--ga~l~q-------------Wd~e~lG~h 411 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIW-----------------PPTSGSVRLD--GADLRQ-------------WDREQLGRH 411 (580)
T ss_pred eEEEECCCCccHHHHHHHHHccc-----------------ccCCCcEEec--chhhhc-------------CCHHHhccc
Confidence 47999999999999999999843 2234556667 433222 234566678
Q ss_pred hhhHHHHhhhcChhHHHHH--hCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 404 VPAVNMLCTLVPRHVLENI--YGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 404 ~~~v~~l~~~i~~~~le~~--Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
+++..+..++++.++-+|. ++-.. .+.....+.+....+|++-.+... .|..++|||.++...||.+
T Consensus 412 iGYLPQdVeLF~GTIaeNIaRf~~~~-d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl--- 487 (580)
T COG4618 412 IGYLPQDVELFDGTIAENIARFGEEA-DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL--- 487 (580)
T ss_pred cCcCcccceecCCcHHHHHHhccccC-CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH---
Confidence 8888888899999988874 33211 111111122334567777777665 6778899999999999998
Q ss_pred HHhCCceeecCC-CCCCh
Q psy9995 475 FVNGHLLYCQAP-PGVPQ 491 (595)
Q Consensus 475 ~~~GKL~~~~~P-P~~~~ 491 (595)
|-+=+|+-...| -+.|.
T Consensus 488 YG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred cCCCcEEEecCCCCCcch
Confidence 445566654444 33443
No 491
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.05 E-value=0.00022 Score=80.82 Aligned_cols=126 Identities=16% Similarity=0.092 Sum_probs=68.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ..+.+-+.+| |..... ++.+.++.
T Consensus 350 ~~~aivG~sGsGKSTL~~ll~g~~-----------------~~~~G~i~~~--g~~~~~-------------~~~~~~~~ 397 (547)
T PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLY-----------------QPQSGEILLD--GKPVTA-------------EQPEDYRK 397 (547)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------------CCCCeEEEEC--CEECCC-------------CCHHHHhh
Confidence 468999999999999999999865 2334455555 543222 22333444
Q ss_pred hhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhh--------h--cCccccCCCCCHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGY--------N--RGFMTSNGQPDNPRSARYIL 472 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~--------~--rG~~~~gG~pD~~rAAr~iL 472 (595)
++..+.+-...++..+.++ +. ....+ ...++++.++. + +|...+|||.++...||.++
T Consensus 398 ~i~~v~q~~~lf~~ti~~n--~~----~~~~~------~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~ 465 (547)
T PRK10522 398 LFSAVFTDFHLFDQLLGPE--GK----PANPA------LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA 465 (547)
T ss_pred heEEEecChhHHHHhhccc--cC----chHHH------HHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 4333333222222222111 00 00000 01222222211 1 36678999999999999998
Q ss_pred HHHHhCCceeec-CCCCCChhhhh
Q psy9995 473 KDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 473 kD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
+ +.+++-.- |=-+.|+..-.
T Consensus 466 ~---~~~ililDE~ts~LD~~~~~ 486 (547)
T PRK10522 466 E---ERDILLLDEWAADQDPHFRR 486 (547)
T ss_pred c---CCCEEEEECCCCCCCHHHHH
Confidence 6 56776554 44446654433
No 492
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.02 E-value=0.00092 Score=64.17 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=36.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcCC---ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~~---~~~liDtPGl~ 378 (595)
++|++||.+|||||||++.+.... ..-...|...-.+. .+.++. .+.++||||..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 689999999999999999998644 21122232222222 233332 56799999975
No 493
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.02 E-value=0.001 Score=63.38 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=37.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCc-eee--EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT-KHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~T-Kh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||++++++.. ..+.....++ .++ .++.++. .+.+.||+|-.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence 4789999999999999999999765 3222332322 222 3344433 46778999964
No 494
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0039 Score=69.24 Aligned_cols=95 Identities=13% Similarity=0.021 Sum_probs=59.8
Q ss_pred CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 139 RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 139 g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
...+.|+||||-. -|. ..=.|=.+-+|++++|||+.+.+...-.+-...++ ..+-|+|+.+||+|..+..
T Consensus 54 ~~~itFiDTPGHe--AFt------~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak--~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 54 IPGITFIDTPGHE--AFT------AMRARGASVTDIAILVVAADDGVMPQTIEAINHAK--AAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred CceEEEEcCCcHH--HHH------HHHhcCCccccEEEEEEEccCCcchhHHHHHHHHH--HCCCCEEEEEecccCCCCC
Confidence 3466789999932 111 11112346689999999999887654443334455 4688999999999997431
Q ss_pred HHHHHHHHHhhCC---------CeEEEEecccCCC
Q psy9995 219 QRCYWTKYFNSVN---------VAVAFFSATNIYD 244 (595)
Q Consensus 219 ~~~~w~~~~~~~g---------i~vi~~SA~~~~~ 244 (595)
-......+.+.| ..++.+||+++.|
T Consensus 124 -p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 124 -PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred -HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 111122233333 2568899999887
No 495
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.00 E-value=0.00093 Score=64.84 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=34.8
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
+|++||.+|||||||++.+.+..-... .++.|.. ....+.++ -.+.++||||..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFEN-YVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceee-eEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999987542211 1222211 12223333 257899999974
No 496
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.00 E-value=9e-05 Score=84.19 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=69.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|.. ..+.+-+.+| |..... ++.+.++.
T Consensus 369 ~~~aivG~sGsGKSTl~~ll~g~~-----------------~p~~G~i~~~--g~~i~~-------------~~~~~~~~ 416 (555)
T TIGR01194 369 DIVFIVGENGCGKSTLAKLFCGLY-----------------IPQEGEILLD--GAAVSA-------------DSRDDYRD 416 (555)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-----------------CCCCcEEEEC--CEECCC-------------CCHHHHHh
Confidence 468999999999999999999865 3345566677 554332 22334444
Q ss_pred hhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cC----ccccCCCCCHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RG----FMTSNGQPDNPRSARYI 471 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG----~~~~gG~pD~~rAAr~i 471 (595)
.+..+.+-...++..+.++. .+...++ ...+.++.++-. .| ...+|||.++...||.+
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~------~~~~~~~-----~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDE------GEHASLD-----NAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred hCcEEccChhhhhhhhhccc------ccchhHH-----HHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 44444333333333322220 0000000 011222221110 22 34789999999999999
Q ss_pred HHHHHhCCceee-cCCCCCChhhh
Q psy9995 472 LKDFVNGHLLYC-QAPPGVPQEKY 494 (595)
Q Consensus 472 LkD~~~GKL~~~-~~PP~~~~~~f 494 (595)
++ +-+++-. +|--+.|+..-
T Consensus 486 l~---~~~ililDE~ts~LD~~~~ 506 (555)
T TIGR01194 486 LE---DRPILLFDEWAADQDPAFK 506 (555)
T ss_pred Hc---CCCEEEEeCCccCCCHHHH
Confidence 87 4566544 44445665443
No 497
>PRK12736 elongation factor Tu; Reviewed
Probab=96.99 E-value=0.00085 Score=73.20 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=42.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc------eeEecC---------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK------KVSVSA---------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~------kvsVs~---------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
..++|+++|.+++|||||+++|++.. ....++ ..|+|.+...... +..+.++||||..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 45899999999999999999998631 111122 5788887654444 4568999999964
No 498
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.99 E-value=0.00058 Score=79.67 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=40.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-----EecC------------CCCCceeeEEEE---cCCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-----SVSA------------TPGKTKHFQTLF---VDDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-----sVs~------------tPG~TKh~Qti~---~~~~~~liDtPGl~ 378 (595)
..+|+|+|.+|+|||||+|+|+..... .+.+ ..|+|.+..... -+..+.++||||+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 358999999999999999999743221 1221 357776643322 25679999999996
No 499
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.98 E-value=0.0025 Score=69.28 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=79.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHH------------HHH------------------Hh-----hhh-c----CeeeEEEe
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAM------------ERD------------------EF-----LQW-R----RELNLLQE 146 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~------------Er~------------------~f-----~~w-r----g~~~~L~D 146 (595)
-.+-|-.+-|.||||..|.+... +|+ -| .++ - ..+++|+|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 34567778888999988888765 222 11 111 1 26789999
Q ss_pred CCCcccCh---hhhhH--------------HHHH----HHHHHHh-hcCeEEEEE-eCCC------CCCCCchHHHHHHH
Q psy9995 147 EDGLVITP---YEKNL--------------DFWR----QLWRVIE-RSDVIVQIV-DARN------PLLFRCEDLERYVK 197 (595)
Q Consensus 147 T~Gi~~t~---~ern~--------------e~~r----ql~~vie-~sDvVl~Vv-DAR~------Pl~~~~~~Le~~lk 197 (595)
|+|+...- ..++. -|.. -+++++. .+|+.|.|. |+.. ........+...++
T Consensus 98 cvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk 177 (492)
T TIGR02836 98 CVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELK 177 (492)
T ss_pred CCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHH
Confidence 99987632 11111 0111 1567888 999999999 8852 22112222333344
Q ss_pred HhCCCCcEEEEEeCCCCCCHHHHHHHHHHHh-hCCCeEEEEeccc
Q psy9995 198 EVSPHKRNMILLNKADLLTRKQRCYWTKYFN-SVNVAVAFFSATN 241 (595)
Q Consensus 198 ~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-~~gi~vi~~SA~~ 241 (595)
..+||.|+|+||+|-..++ ...+.+.+. +.+++++++|+..
T Consensus 178 --~~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 178 --ELNKPFIILLNSTHPYHPE-TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred --hcCCCEEEEEECcCCCCch-hHHHHHHHHHHhCCceEEEEHHH
Confidence 4589999999999954333 233333332 3377889998853
No 500
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.96 E-value=0.00084 Score=66.03 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=36.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE-EEcCC----ceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT-LFVDD----ELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt-i~~~~----~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|.+..- .-...|..+-.+.. ..... .+.++||+|..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH
Confidence 7899999999999999999997652 22222332323222 12222 37889999975
Done!