Query psy9995
Match_columns 595
No_of_seqs 581 out of 3261
Neff 6.4
Searched_HMMs 29240
Date Sat Aug 17 00:57:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 1.3E-41 4.3E-46 350.3 23.9 257 159-485 11-277 (282)
2 3cnl_A YLQF, putative uncharac 100.0 3E-38 1E-42 321.9 15.6 231 161-486 11-246 (262)
3 1mky_A Probable GTP-binding pr 99.9 1.5E-24 5.3E-29 235.6 11.9 217 108-378 3-239 (439)
4 2hjg_A GTP-binding protein ENG 99.9 1.1E-24 3.8E-29 236.5 3.3 213 107-379 4-235 (436)
5 4dcu_A GTP-binding protein ENG 99.9 5.2E-23 1.8E-27 224.6 6.4 216 105-380 22-256 (456)
6 3ec1_A YQEH GTPase; atnos1, at 99.9 2E-21 7E-26 206.8 14.6 153 161-381 61-226 (369)
7 3h2y_A GTPase family protein; 99.8 3.5E-21 1.2E-25 205.0 12.2 153 161-381 59-225 (368)
8 1t9h_A YLOQ, probable GTPase E 99.8 6.2E-21 2.1E-25 198.3 1.5 162 147-381 65-238 (307)
9 2rcn_A Probable GTPase ENGC; Y 99.7 3.9E-19 1.3E-23 188.3 3.6 161 149-379 103-280 (358)
10 2yv5_A YJEQ protein; hydrolase 99.7 6.4E-18 2.2E-22 175.1 9.4 160 147-379 58-228 (302)
11 1u0l_A Probable GTPase ENGC; p 99.6 1.7E-15 5.7E-20 156.7 12.4 144 168-381 81-235 (301)
12 2e87_A Hypothetical protein PH 99.3 2.4E-14 8.2E-19 151.2 -6.9 166 172-381 58-228 (357)
13 1wf3_A GTP-binding protein; GT 99.2 1.6E-11 5.4E-16 127.0 7.1 137 107-244 8-159 (301)
14 3iev_A GTP-binding protein ERA 99.2 1.4E-11 4.8E-16 127.6 6.7 138 105-244 9-168 (308)
15 1xzp_A Probable tRNA modificat 99.1 2.9E-11 9.8E-16 132.9 5.3 133 107-244 244-391 (482)
16 3gee_A MNME, tRNA modification 99.0 2E-10 6.9E-15 126.0 5.1 135 107-244 234-384 (476)
17 4dhe_A Probable GTP-binding pr 99.0 3.3E-10 1.1E-14 109.7 5.7 137 106-244 29-197 (223)
18 1x3s_A RAS-related protein RAB 99.0 1.3E-10 4.4E-15 109.5 1.8 128 107-244 16-164 (195)
19 3geh_A MNME, tRNA modification 99.0 1.2E-10 4E-15 127.4 1.5 132 107-244 225-370 (462)
20 3cb4_D GTP-binding protein LEP 98.9 2.6E-09 8.8E-14 120.3 11.5 172 109-346 7-217 (599)
21 1ega_A Protein (GTP-binding pr 98.9 3.6E-10 1.2E-14 116.6 4.2 135 107-244 9-161 (301)
22 2gj8_A MNME, tRNA modification 98.9 2.6E-10 8.9E-15 106.9 2.0 133 107-244 5-152 (172)
23 4a9a_A Ribosome-interacting GT 98.9 4.4E-10 1.5E-14 119.7 3.3 60 320-380 70-132 (376)
24 3pqc_A Probable GTP-binding pr 98.9 1.7E-09 5.9E-14 101.5 6.5 137 106-244 23-180 (195)
25 1svi_A GTP-binding protein YSX 98.9 4.4E-09 1.5E-13 99.2 8.3 137 105-244 22-181 (195)
26 4dcu_A GTP-binding protein ENG 98.9 1.1E-09 3.8E-14 119.2 4.7 135 108-244 197-355 (456)
27 2hjg_A GTP-binding protein ENG 98.8 7E-10 2.4E-14 120.1 2.9 135 108-244 177-335 (436)
28 1mky_A Probable GTP-binding pr 98.8 8.8E-10 3E-14 119.4 3.0 135 108-244 182-341 (439)
29 2qu8_A Putative nucleolar GTP- 98.8 7.9E-09 2.7E-13 101.1 9.0 139 106-244 29-191 (228)
30 2qtf_A Protein HFLX, GTP-bindi 98.8 1.4E-09 4.9E-14 115.3 2.8 57 322-379 179-238 (364)
31 2e87_A Hypothetical protein PH 98.8 6.9E-09 2.4E-13 109.3 7.8 137 108-244 169-322 (357)
32 2dyk_A GTP-binding protein; GT 98.8 3.2E-09 1.1E-13 96.5 4.3 130 109-244 4-148 (161)
33 1svi_A GTP-binding protein YSX 98.8 5.4E-09 1.9E-13 98.6 5.8 61 321-381 22-83 (195)
34 3j2k_7 ERF3, eukaryotic polype 98.8 5.7E-08 1.9E-12 105.4 14.4 128 108-245 19-212 (439)
35 3pqc_A Probable GTP-binding pr 98.7 1.1E-08 3.7E-13 96.0 6.3 60 321-380 22-81 (195)
36 3iby_A Ferrous iron transport 98.7 1.2E-09 4.1E-14 110.2 -0.4 128 109-244 4-153 (256)
37 3lxw_A GTPase IMAP family memb 98.7 7.6E-09 2.6E-13 103.5 4.9 61 320-380 19-83 (247)
38 1zj6_A ADP-ribosylation factor 98.7 1.6E-08 5.4E-13 95.2 6.7 131 104-244 14-164 (187)
39 1zd9_A ADP-ribosylation factor 98.7 1.7E-08 5.7E-13 95.4 6.7 128 107-244 23-171 (188)
40 4dhe_A Probable GTP-binding pr 98.7 7.2E-09 2.5E-13 100.2 4.2 61 321-381 28-93 (223)
41 1wf3_A GTP-binding protein; GT 98.7 8.9E-09 3.1E-13 106.3 5.1 59 323-381 8-69 (301)
42 4bas_A ADP-ribosylation factor 98.7 1.6E-08 5.4E-13 95.5 6.4 130 105-244 16-175 (199)
43 3i8s_A Ferrous iron transport 98.7 1.7E-08 5.6E-13 102.6 6.8 57 322-379 3-62 (274)
44 3sjy_A Translation initiation 98.7 3.9E-08 1.3E-12 105.3 9.9 129 107-244 9-178 (403)
45 3t1o_A Gliding protein MGLA; G 98.7 1.2E-08 4.2E-13 95.7 4.5 130 107-244 15-178 (198)
46 3iev_A GTP-binding protein ERA 98.7 1.4E-08 4.8E-13 105.0 5.2 61 321-381 9-73 (308)
47 3t5g_A GTP-binding protein RHE 98.6 9.7E-09 3.3E-13 95.7 3.4 127 108-244 8-155 (181)
48 1r8s_A ADP-ribosylation factor 98.6 2.3E-08 7.8E-13 91.3 5.6 126 109-244 3-148 (164)
49 1z0f_A RAB14, member RAS oncog 98.6 1.2E-08 4E-13 94.2 3.5 128 107-244 16-164 (179)
50 2h57_A ADP-ribosylation factor 98.6 1.3E-08 4.3E-13 96.1 3.8 131 106-244 21-173 (190)
51 2gj8_A MNME, tRNA modification 98.6 2.1E-08 7.1E-13 93.9 5.2 58 322-379 4-64 (172)
52 1upt_A ARL1, ADP-ribosylation 98.6 2E-08 6.7E-13 92.2 5.0 127 108-244 9-155 (171)
53 2efe_B Small GTP-binding prote 98.6 2.3E-08 7.9E-13 92.8 5.5 128 107-244 13-161 (181)
54 1ksh_A ARF-like protein 2; sma 98.6 1E-08 3.6E-13 96.0 3.1 130 105-244 17-166 (186)
55 2f7s_A C25KG, RAS-related prot 98.6 2.8E-08 9.6E-13 95.7 6.1 129 106-244 25-185 (217)
56 2qtf_A Protein HFLX, GTP-bindi 98.6 3.7E-08 1.3E-12 104.4 7.4 136 109-244 182-340 (364)
57 3iby_A Ferrous iron transport 98.6 2.7E-08 9.3E-13 100.2 5.9 55 323-378 2-59 (256)
58 3clv_A RAB5 protein, putative; 98.6 2.4E-08 8.3E-13 93.7 5.2 95 140-244 93-190 (208)
59 2h17_A ADP-ribosylation factor 98.6 2.8E-08 9.5E-13 93.1 5.2 129 106-244 21-169 (181)
60 3def_A T7I23.11 protein; chlor 98.6 3.9E-08 1.3E-12 98.9 6.6 60 321-380 35-97 (262)
61 1h65_A Chloroplast outer envel 98.6 3.9E-08 1.3E-12 99.3 6.6 60 321-380 38-100 (270)
62 1pui_A ENGB, probable GTP-bind 98.6 2.8E-08 9.5E-13 95.1 5.2 58 322-379 26-84 (210)
63 3i8s_A Ferrous iron transport 98.6 3.9E-09 1.3E-13 107.3 -1.1 129 108-244 5-155 (274)
64 3lxw_A GTPase IMAP family memb 98.6 1.3E-08 4.6E-13 101.7 2.7 135 106-241 21-186 (247)
65 3p26_A Elongation factor 1 alp 98.6 4.9E-08 1.7E-12 107.1 7.3 102 136-246 107-226 (483)
66 2cxx_A Probable GTP-binding pr 98.6 3.3E-08 1.1E-12 92.4 5.1 55 323-379 2-56 (190)
67 3dz8_A RAS-related protein RAB 98.6 9E-08 3.1E-12 90.4 8.0 125 107-244 24-172 (191)
68 3bc1_A RAS-related protein RAB 98.6 2.8E-08 9.5E-13 92.8 4.2 128 107-244 12-171 (195)
69 1ega_A Protein (GTP-binding pr 98.6 4E-08 1.4E-12 101.3 5.3 56 323-378 9-67 (301)
70 3tkl_A RAS-related protein RAB 98.6 2.1E-08 7E-13 94.5 2.8 128 107-244 17-165 (196)
71 3tr5_A RF-3, peptide chain rel 98.5 1.6E-07 5.6E-12 104.2 10.3 103 105-217 12-149 (528)
72 1r2q_A RAS-related protein RAB 98.5 2.4E-08 8.2E-13 91.2 2.9 127 108-244 8-155 (170)
73 3a1s_A Iron(II) transport prot 98.5 5.8E-08 2E-12 97.9 6.0 56 322-378 5-63 (258)
74 2fu5_C RAS-related protein RAB 98.5 3.7E-08 1.3E-12 91.9 4.2 128 107-244 9-157 (183)
75 3tw8_B RAS-related protein RAB 98.5 4.2E-08 1.4E-12 90.6 4.4 128 107-244 10-157 (181)
76 3lxx_A GTPase IMAP family memb 98.5 3.8E-08 1.3E-12 97.1 4.4 61 320-381 27-92 (239)
77 2yc2_C IFT27, small RAB-relate 98.5 4.3E-08 1.5E-12 93.0 4.6 128 107-244 21-178 (208)
78 2fg5_A RAB-22B, RAS-related pr 98.5 3.6E-08 1.2E-12 93.4 4.0 129 106-244 23-172 (192)
79 1f5n_A Interferon-induced guan 98.5 6.3E-08 2.2E-12 108.6 6.6 61 321-381 37-105 (592)
80 2g6b_A RAS-related protein RAB 98.5 2.6E-08 8.9E-13 92.3 2.9 127 108-244 12-160 (180)
81 1z0j_A RAB-22, RAS-related pro 98.5 3.9E-08 1.3E-12 89.9 3.9 127 108-244 8-155 (170)
82 2xtp_A GTPase IMAP family memb 98.5 5E-08 1.7E-12 97.4 5.0 61 321-381 21-85 (260)
83 2hxs_A RAB-26, RAS-related pro 98.5 1.4E-08 4.9E-13 93.9 0.9 127 108-244 8-159 (178)
84 2b6h_A ADP-ribosylation factor 98.5 3.3E-08 1.1E-12 94.1 3.4 127 108-244 31-177 (192)
85 2y8e_A RAB-protein 6, GH09086P 98.5 3E-08 1E-12 91.5 3.0 128 107-244 15-163 (179)
86 3b1v_A Ferrous iron uptake tra 98.5 6.5E-08 2.2E-12 98.4 5.7 56 322-378 3-60 (272)
87 2nzj_A GTP-binding protein REM 98.5 8.7E-08 3E-12 88.2 6.0 58 322-379 4-64 (175)
88 2il1_A RAB12; G-protein, GDP, 98.5 8.1E-08 2.8E-12 91.1 5.9 129 106-244 26-176 (192)
89 3k53_A Ferrous iron transport 98.5 8.5E-08 2.9E-12 96.8 6.4 56 322-378 3-61 (271)
90 1zun_B Sulfate adenylate trans 98.5 2.1E-07 7.1E-12 100.7 9.8 101 136-245 100-211 (434)
91 3lxx_A GTPase IMAP family memb 98.5 4.3E-08 1.5E-12 96.8 4.0 135 106-241 29-192 (239)
92 3a1s_A Iron(II) transport prot 98.5 2.3E-08 8E-13 100.8 2.1 129 108-244 7-153 (258)
93 1kao_A RAP2A; GTP-binding prot 98.5 6.4E-08 2.2E-12 87.9 4.8 126 109-244 6-152 (167)
94 2a9k_A RAS-related protein RAL 98.5 1E-07 3.4E-12 88.5 6.2 128 107-244 19-167 (187)
95 2gf9_A RAS-related protein RAB 98.5 4.5E-08 1.6E-12 92.2 3.8 128 107-244 23-171 (189)
96 3gee_A MNME, tRNA modification 98.5 3E-08 1E-12 108.8 2.8 58 322-379 233-293 (476)
97 2wji_A Ferrous iron transport 98.5 8.7E-08 3E-12 88.6 5.5 128 108-244 5-151 (165)
98 1wb1_A Translation elongation 98.5 1.7E-07 5.9E-12 102.8 8.7 127 108-244 21-175 (482)
99 1u8z_A RAS-related protein RAL 98.5 5.6E-08 1.9E-12 88.3 4.0 126 109-244 7-153 (168)
100 1moz_A ARL1, ADP-ribosylation 98.5 3.9E-08 1.3E-12 91.6 2.9 128 107-244 19-166 (183)
101 2o52_A RAS-related protein RAB 98.5 3.7E-08 1.3E-12 94.2 2.8 129 106-244 25-174 (200)
102 3lvq_E ARF-GAP with SH3 domain 98.5 3.7E-08 1.3E-12 107.9 3.0 128 107-244 323-470 (497)
103 1xzp_A Probable tRNA modificat 98.5 2.1E-08 7.3E-13 110.1 1.0 57 322-378 243-302 (482)
104 1wxq_A GTP-binding protein; st 98.5 6.2E-08 2.1E-12 103.9 4.5 43 202-244 214-256 (397)
105 3k53_A Ferrous iron transport 98.5 1.2E-08 4.3E-13 103.0 -0.9 129 109-244 6-152 (271)
106 1lnz_A SPO0B-associated GTP-bi 98.5 1.3E-08 4.5E-13 107.1 -0.8 135 108-244 160-316 (342)
107 2c78_A Elongation factor TU-A; 98.5 1.4E-07 5E-12 100.9 7.1 127 108-244 13-180 (405)
108 1ek0_A Protein (GTP-binding pr 98.5 2.8E-08 9.6E-13 90.7 1.3 126 109-244 6-155 (170)
109 1wxq_A GTP-binding protein; st 98.5 4.8E-08 1.6E-12 104.8 3.3 56 323-379 1-83 (397)
110 2oil_A CATX-8, RAS-related pro 98.5 7.5E-08 2.6E-12 90.8 4.3 128 107-244 26-174 (193)
111 3t5d_A Septin-7; GTP-binding p 98.5 1.2E-07 4.1E-12 95.9 6.0 57 322-378 8-76 (274)
112 1zbd_A Rabphilin-3A; G protein 98.5 3.5E-08 1.2E-12 93.9 1.9 127 108-244 10-157 (203)
113 1z06_A RAS-related protein RAB 98.5 1E-07 3.4E-12 89.8 5.0 126 107-242 21-169 (189)
114 3p32_A Probable GTPase RV1496/ 98.5 2.9E-07 9.9E-12 96.9 9.0 93 135-244 167-270 (355)
115 1m2o_B GTP-binding protein SAR 98.5 1.2E-07 4.1E-12 90.0 5.4 128 107-244 24-178 (190)
116 1c1y_A RAS-related protein RAP 98.5 2E-07 6.9E-12 84.8 6.7 126 109-244 6-153 (167)
117 2lkc_A Translation initiation 98.5 6.8E-08 2.3E-12 89.3 3.5 128 107-244 9-157 (178)
118 2hup_A RAS-related protein RAB 98.5 8.4E-08 2.9E-12 91.9 4.3 129 106-244 29-179 (201)
119 3izq_1 HBS1P, elongation facto 98.5 2.3E-07 8E-12 104.7 8.6 131 107-246 168-360 (611)
120 2erx_A GTP-binding protein DI- 98.4 1.1E-07 3.7E-12 87.0 4.7 129 108-244 5-153 (172)
121 1fzq_A ADP-ribosylation factor 98.4 8.4E-08 2.9E-12 90.2 4.0 129 106-244 16-164 (181)
122 2wjg_A FEOB, ferrous iron tran 98.4 1.7E-07 5.8E-12 87.7 6.0 56 322-378 7-65 (188)
123 4dsu_A GTPase KRAS, isoform 2B 98.4 6.6E-08 2.3E-12 90.1 3.2 124 108-244 6-152 (189)
124 2qu8_A Putative nucleolar GTP- 98.4 2E-07 6.7E-12 91.1 6.6 60 319-379 26-88 (228)
125 1f6b_A SAR1; gtpases, N-termin 98.4 1.3E-07 4.6E-12 90.3 5.4 127 108-244 27-185 (198)
126 2bme_A RAB4A, RAS-related prot 98.4 3.5E-08 1.2E-12 92.1 1.2 127 108-244 12-159 (186)
127 1jal_A YCHF protein; nucleotid 98.4 9.6E-08 3.3E-12 101.2 4.6 56 323-379 3-78 (363)
128 1jwy_B Dynamin A GTPase domain 98.4 1.1E-07 3.6E-12 97.5 4.8 99 140-242 131-240 (315)
129 2wji_A Ferrous iron transport 98.4 9.4E-08 3.2E-12 88.4 3.9 56 322-378 3-61 (165)
130 2j1l_A RHO-related GTP-binding 98.4 1.9E-07 6.4E-12 90.3 5.9 129 108-244 36-195 (214)
131 2dyk_A GTP-binding protein; GT 98.4 9.9E-08 3.4E-12 86.6 3.3 57 323-379 2-61 (161)
132 2bov_A RAla, RAS-related prote 98.4 1.5E-07 5.1E-12 89.3 4.7 128 107-244 15-163 (206)
133 1mh1_A RAC1; GTP-binding, GTPa 98.4 9.5E-08 3.3E-12 88.8 3.2 129 108-244 7-166 (186)
134 3cph_A RAS-related protein SEC 98.4 4.6E-08 1.6E-12 93.4 0.9 126 106-244 20-168 (213)
135 2fn4_A P23, RAS-related protei 98.4 8.3E-08 2.8E-12 88.6 2.5 127 108-244 11-158 (181)
136 2nzj_A GTP-binding protein REM 98.4 1.1E-07 3.8E-12 87.4 3.3 125 108-244 6-155 (175)
137 3th5_A RAS-related C3 botulinu 97.8 3.7E-08 1.3E-12 94.1 0.0 130 107-244 31-191 (204)
138 3t5d_A Septin-7; GTP-binding p 98.4 1.3E-07 4.4E-12 95.7 4.0 135 107-244 9-190 (274)
139 2p5s_A RAS and EF-hand domain 98.4 1.3E-07 4.5E-12 90.0 3.8 130 105-244 27-183 (199)
140 3kkq_A RAS-related protein M-R 98.4 1.3E-07 4.4E-12 88.1 3.6 124 108-244 20-168 (183)
141 2gf0_A GTP-binding protein DI- 98.4 2.5E-07 8.5E-12 87.2 5.6 130 107-244 9-157 (199)
142 3con_A GTPase NRAS; structural 98.4 9.7E-08 3.3E-12 89.7 2.7 128 107-244 22-169 (190)
143 2x77_A ADP-ribosylation factor 98.4 6.9E-08 2.3E-12 90.8 1.6 127 108-244 24-170 (189)
144 2a5j_A RAS-related protein RAB 98.4 7.3E-08 2.5E-12 91.0 1.8 127 108-244 23-170 (191)
145 1g16_A RAS-related protein SEC 98.4 5.3E-08 1.8E-12 89.0 0.7 126 109-244 6-151 (170)
146 3gj0_A GTP-binding nuclear pro 98.4 6.4E-08 2.2E-12 93.7 1.3 128 108-245 17-162 (221)
147 3b1v_A Ferrous iron uptake tra 98.4 5.5E-08 1.9E-12 99.0 0.6 128 108-244 5-150 (272)
148 2bcg_Y Protein YP2, GTP-bindin 98.4 1.7E-07 5.8E-12 89.4 4.0 127 108-244 10-157 (206)
149 3o47_A ADP-ribosylation factor 98.4 1.2E-07 4.2E-12 98.8 3.2 128 107-244 166-313 (329)
150 2aka_B Dynamin-1; fusion prote 98.4 8E-08 2.7E-12 97.4 1.7 104 140-245 125-240 (299)
151 3q72_A GTP-binding protein RAD 98.4 2.2E-07 7.4E-12 84.9 4.4 126 109-244 5-150 (166)
152 1f60_A Elongation factor EEF1A 98.4 2E-07 6.9E-12 101.6 5.0 128 108-245 9-199 (458)
153 3reg_A RHO-like small GTPase; 98.4 3.2E-08 1.1E-12 93.6 -1.2 131 106-244 23-174 (194)
154 2xtp_A GTPase IMAP family memb 98.4 6.9E-08 2.3E-12 96.4 1.1 111 106-217 22-154 (260)
155 1kk1_A EIF2gamma; initiation o 98.4 1.7E-06 5.7E-11 92.8 11.9 128 108-244 12-186 (410)
156 2atv_A RERG, RAS-like estrogen 98.4 1.6E-07 5.4E-12 89.1 3.5 124 106-243 28-175 (196)
157 4djt_A GTP-binding nuclear pro 98.4 1.6E-07 5.4E-12 90.5 3.5 128 107-244 12-161 (218)
158 2www_A Methylmalonic aciduria 98.4 9.9E-07 3.4E-11 92.8 9.8 122 106-244 74-265 (349)
159 3geh_A MNME, tRNA modification 98.4 4.6E-08 1.6E-12 106.9 -0.4 58 322-379 224-284 (462)
160 2aka_B Dynamin-1; fusion prote 98.3 1.4E-07 4.7E-12 95.6 3.1 35 321-355 25-64 (299)
161 4a9a_A Ribosome-interacting GT 98.3 9E-08 3.1E-12 101.9 1.8 105 108-214 74-194 (376)
162 1z2a_A RAS-related protein RAB 98.3 5.5E-08 1.9E-12 88.7 0.1 127 108-244 7-153 (168)
163 2ohf_A Protein OLA1, GTP-bindi 98.3 1.8E-07 6.2E-12 100.1 4.0 58 322-380 22-99 (396)
164 1z08_A RAS-related protein RAB 98.3 7.1E-08 2.4E-12 88.3 0.7 127 108-244 8-155 (170)
165 2wjg_A FEOB, ferrous iron tran 98.3 3.3E-07 1.1E-11 85.7 5.2 128 108-244 9-155 (188)
166 2fv8_A H6, RHO-related GTP-bin 98.3 2.2E-07 7.6E-12 89.1 4.0 130 107-244 26-186 (207)
167 3q85_A GTP-binding protein REM 98.3 2.2E-07 7.6E-12 85.1 3.8 127 109-244 5-153 (169)
168 3q72_A GTP-binding protein RAD 98.3 3.1E-07 1.1E-11 83.8 4.7 56 322-378 2-60 (166)
169 3ihw_A Centg3; RAS, centaurin, 98.3 3.6E-07 1.2E-11 86.3 5.4 120 107-244 21-166 (184)
170 3bwd_D RAC-like GTP-binding pr 98.3 2.4E-07 8.1E-12 85.9 3.9 130 107-244 9-167 (182)
171 2gco_A H9, RHO-related GTP-bin 98.3 2.1E-07 7.3E-12 88.8 3.7 130 107-244 26-186 (201)
172 3qq5_A Small GTP-binding prote 98.3 4.2E-08 1.4E-12 106.1 -1.5 133 107-245 35-183 (423)
173 3cpj_B GTP-binding protein YPT 98.3 1.7E-07 5.8E-12 91.1 3.0 128 107-244 14-162 (223)
174 3q3j_B RHO-related GTP-binding 98.3 2.2E-07 7.5E-12 90.1 3.7 129 105-244 26-188 (214)
175 4gzl_A RAS-related C3 botulinu 98.3 1.6E-07 5.5E-12 90.1 2.6 131 106-244 30-191 (204)
176 1ky3_A GTP-binding protein YPT 98.3 1.8E-07 6.2E-12 86.4 2.9 127 106-244 8-164 (182)
177 1vg8_A RAS-related protein RAB 98.3 2.3E-07 7.8E-12 88.2 3.6 128 107-244 9-161 (207)
178 1wms_A RAB-9, RAB9, RAS-relate 98.3 1.9E-07 6.6E-12 86.1 3.0 127 108-244 9-160 (177)
179 2ew1_A RAS-related protein RAB 98.3 1E-07 3.6E-12 91.8 1.1 128 107-244 27-175 (201)
180 1jny_A EF-1-alpha, elongation 98.3 9.4E-07 3.2E-11 95.6 8.7 102 135-245 79-200 (435)
181 2iwr_A Centaurin gamma 1; ANK 98.3 4.1E-07 1.4E-11 84.2 5.1 120 108-244 9-155 (178)
182 3oes_A GTPase rhebl1; small GT 98.3 1.4E-07 4.6E-12 90.1 1.8 126 106-244 24-173 (201)
183 2ywe_A GTP-binding protein LEP 98.3 2E-06 6.8E-11 96.8 11.5 94 140-244 73-170 (600)
184 1z0j_A RAB-22, RAS-related pro 98.3 3.5E-07 1.2E-11 83.5 4.4 57 322-378 6-66 (170)
185 1s0u_A EIF-2-gamma, translatio 98.3 3E-06 1E-10 90.7 12.2 96 140-244 81-184 (408)
186 1d2e_A Elongation factor TU (E 98.3 7.2E-07 2.5E-11 95.3 7.1 126 109-244 6-171 (397)
187 2ce2_X GTPase HRAS; signaling 98.3 3.3E-07 1.1E-11 82.8 3.6 126 109-244 6-151 (166)
188 1jwy_B Dynamin A GTPase domain 98.3 8.6E-07 3E-11 90.6 6.8 35 321-355 23-62 (315)
189 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 4E-07 1.4E-11 97.5 4.2 59 322-380 20-98 (392)
190 2x2e_A Dynamin-1; nitration, h 98.3 8.3E-07 2.9E-11 93.2 6.5 35 321-355 30-69 (353)
191 1ek0_A Protein (GTP-binding pr 98.2 5.1E-07 1.7E-11 82.2 4.1 57 322-378 3-63 (170)
192 4f4c_A Multidrug resistance pr 98.2 3.5E-08 1.2E-12 120.4 -4.9 134 323-491 1106-1250(1321)
193 2p67_A LAO/AO transport system 98.2 3E-06 1E-10 88.7 10.5 93 135-244 144-247 (341)
194 3mca_A HBS1, elongation factor 98.2 7.4E-08 2.5E-12 108.4 -2.0 128 108-245 179-370 (592)
195 2q3h_A RAS homolog gene family 98.2 5.4E-07 1.9E-11 85.4 4.3 129 105-244 19-181 (201)
196 2elf_A Protein translation elo 98.2 9.1E-07 3.1E-11 93.9 6.3 123 108-244 23-166 (370)
197 2atx_A Small GTP binding prote 98.2 3.7E-07 1.3E-11 86.0 2.9 129 108-244 20-179 (194)
198 3r7w_A Gtpase1, GTP-binding pr 98.2 6.8E-07 2.3E-11 92.1 5.1 131 108-241 5-165 (307)
199 3c5c_A RAS-like protein 12; GD 98.2 2.5E-07 8.4E-12 87.5 1.6 126 105-244 20-172 (187)
200 3izy_P Translation initiation 98.2 2.4E-07 8.1E-12 103.0 1.5 128 107-244 5-154 (537)
201 2fh5_B SR-beta, signal recogni 98.2 8.1E-07 2.8E-11 85.2 5.0 103 106-217 7-130 (214)
202 2ged_A SR-beta, signal recogni 98.2 6E-07 2.1E-11 84.4 3.9 56 320-379 46-103 (193)
203 2j69_A Bacterial dynamin-like 98.2 4.8E-07 1.7E-11 103.6 3.8 70 141-217 175-245 (695)
204 1moz_A ARL1, ADP-ribosylation 98.2 1.1E-06 3.9E-11 81.5 5.6 56 321-378 17-73 (183)
205 2lkc_A Translation initiation 98.2 4.6E-07 1.6E-11 83.6 2.8 58 320-378 6-66 (178)
206 1zj6_A ADP-ribosylation factor 98.2 1.3E-06 4.6E-11 81.8 6.0 56 322-378 16-71 (187)
207 1fzq_A ADP-ribosylation factor 98.2 9.4E-07 3.2E-11 82.9 4.9 56 321-378 15-71 (181)
208 2x77_A ADP-ribosylation factor 98.2 1.3E-06 4.4E-11 82.0 5.9 56 321-378 21-77 (189)
209 1upt_A ARL1, ADP-ribosylation 98.2 7.1E-07 2.4E-11 81.7 3.9 56 321-378 6-62 (171)
210 2fg5_A RAB-22B, RAS-related pr 98.2 7.1E-07 2.4E-11 84.4 4.0 58 321-378 22-83 (192)
211 2h17_A ADP-ribosylation factor 98.2 1.3E-06 4.6E-11 81.5 5.8 56 321-378 20-76 (181)
212 1wms_A RAB-9, RAB9, RAS-relate 98.2 1.1E-06 3.9E-11 80.9 5.2 58 321-378 6-67 (177)
213 1kao_A RAP2A; GTP-binding prot 98.2 1.3E-06 4.3E-11 79.2 5.3 55 322-378 3-62 (167)
214 1r5b_A Eukaryotic peptide chai 98.2 1E-06 3.6E-11 96.2 5.3 101 135-245 116-239 (467)
215 2j69_A Bacterial dynamin-like 98.2 1.1E-06 3.7E-11 100.7 5.6 35 322-356 69-103 (695)
216 1g16_A RAS-related protein SEC 98.2 1.3E-06 4.3E-11 79.7 5.0 56 322-378 3-63 (170)
217 3gj0_A GTP-binding nuclear pro 98.2 1.2E-06 4E-11 84.8 5.0 59 320-378 13-75 (221)
218 3zvr_A Dynamin-1; hydrolase, D 98.2 6.2E-07 2.1E-11 103.2 3.4 103 141-245 151-265 (772)
219 1z0f_A RAB14, member RAS oncog 98.2 1.5E-06 5.2E-11 79.9 5.2 58 321-378 14-75 (179)
220 2qpt_A EH domain-containing pr 98.2 1.2E-06 4.1E-11 97.7 5.4 39 321-359 64-104 (550)
221 2p5s_A RAS and EF-hand domain 98.2 1.3E-06 4.6E-11 82.9 4.9 58 321-378 27-88 (199)
222 2j0v_A RAC-like GTP-binding pr 98.1 3.8E-07 1.3E-11 87.4 1.0 128 109-244 12-166 (212)
223 3cph_A RAS-related protein SEC 98.1 1.5E-06 5E-11 82.9 5.1 58 320-378 18-80 (213)
224 1ksh_A ARF-like protein 2; sma 98.1 1.1E-06 3.9E-11 82.0 4.2 56 321-378 17-73 (186)
225 3l0i_B RAS-related protein RAB 98.1 5.6E-08 1.9E-12 92.6 -4.9 127 108-244 35-182 (199)
226 3cbq_A GTP-binding protein REM 98.1 8E-07 2.7E-11 84.8 3.1 131 105-244 22-174 (195)
227 2g6b_A RAS-related protein RAB 98.1 1.6E-06 5.5E-11 80.1 5.1 59 320-378 8-71 (180)
228 4f4c_A Multidrug resistance pr 98.1 9.8E-08 3.3E-12 116.5 -4.1 134 323-491 445-587 (1321)
229 1r2q_A RAS-related protein RAB 98.1 1.3E-06 4.3E-11 79.6 4.3 57 322-378 6-66 (170)
230 3llu_A RAS-related GTP-binding 98.1 2.4E-06 8.1E-11 81.1 6.3 134 105-244 19-183 (196)
231 1z2a_A RAS-related protein RAB 98.1 1.8E-06 6.2E-11 78.5 5.3 57 321-378 4-65 (168)
232 2www_A Methylmalonic aciduria 98.1 8.2E-07 2.8E-11 93.4 3.4 25 320-344 72-96 (349)
233 3tw8_B RAS-related protein RAB 98.1 1.6E-06 5.6E-11 79.8 4.9 57 321-378 8-69 (181)
234 1m7b_A RND3/RHOE small GTP-bin 98.1 1E-06 3.6E-11 82.5 3.5 123 107-240 8-164 (184)
235 3dpu_A RAB family protein; roc 98.1 7E-07 2.4E-11 99.0 2.7 129 108-246 43-196 (535)
236 2dby_A GTP-binding protein; GD 98.1 5.9E-07 2E-11 95.4 2.0 57 323-380 2-82 (368)
237 2wkq_A NPH1-1, RAS-related C3 98.1 1.6E-06 5.4E-11 88.6 4.9 130 107-244 156-316 (332)
238 2qpt_A EH domain-containing pr 98.1 9.1E-07 3.1E-11 98.7 3.1 85 141-227 155-243 (550)
239 3r7w_A Gtpase1, GTP-binding pr 98.1 1.2E-06 3.9E-11 90.4 3.7 57 322-378 3-63 (307)
240 1lnz_A SPO0B-associated GTP-bi 98.1 8.3E-07 2.8E-11 93.3 2.6 55 324-379 160-218 (342)
241 2efe_B Small GTP-binding prote 98.1 2E-06 6.7E-11 79.6 4.9 58 321-378 11-72 (181)
242 3qq5_A Small GTP-binding prote 98.1 1.5E-06 5E-11 94.0 4.6 60 320-379 32-95 (423)
243 2cxx_A Probable GTP-binding pr 98.1 2E-06 6.7E-11 80.2 4.9 133 110-244 5-170 (190)
244 2il1_A RAB12; G-protein, GDP, 98.1 2.2E-06 7.5E-11 81.1 5.2 59 320-378 24-86 (192)
245 4dsu_A GTPase KRAS, isoform 2B 98.1 2.2E-06 7.4E-11 79.7 5.1 55 322-378 4-63 (189)
246 1gwn_A RHO-related GTP-binding 98.1 1.2E-06 4E-11 84.5 3.3 124 106-240 28-185 (205)
247 2gf9_A RAS-related protein RAB 98.1 2.5E-06 8.7E-11 80.0 5.4 58 321-378 21-82 (189)
248 1zbd_A Rabphilin-3A; G protein 98.1 2.5E-06 8.6E-11 80.9 5.3 57 322-378 8-68 (203)
249 1u8z_A RAS-related protein RAL 98.1 2.7E-06 9.4E-11 77.0 5.3 55 322-378 4-63 (168)
250 3t34_A Dynamin-related protein 98.1 9.3E-07 3.2E-11 93.0 2.4 102 140-244 136-247 (360)
251 4djt_A GTP-binding nuclear pro 98.1 2.5E-06 8.5E-11 82.0 5.1 58 321-378 10-72 (218)
252 3clv_A RAB5 protein, putative; 98.1 2.8E-06 9.6E-11 79.4 5.3 26 321-346 6-31 (208)
253 1z08_A RAS-related protein RAB 98.1 2.6E-06 9E-11 77.7 5.0 57 321-378 5-66 (170)
254 3t5g_A GTP-binding protein RHE 98.1 3.3E-06 1.1E-10 78.3 5.7 56 322-378 6-65 (181)
255 1nrj_B SR-beta, signal recogni 98.1 1.1E-06 3.7E-11 84.6 2.4 136 105-244 11-170 (218)
256 3avx_A Elongation factor TS, e 98.1 5.9E-06 2E-10 98.3 9.0 125 108-242 298-462 (1289)
257 1x3s_A RAS-related protein RAB 98.1 2.1E-06 7.1E-11 80.4 4.2 57 322-378 15-75 (195)
258 1z06_A RAS-related protein RAB 98.1 3.7E-06 1.3E-10 79.0 5.8 58 321-378 19-80 (189)
259 4bas_A ADP-ribosylation factor 98.1 2.8E-06 9.7E-11 79.9 5.1 57 320-378 15-74 (199)
260 2h57_A ADP-ribosylation factor 98.1 2.1E-06 7.3E-11 80.7 4.2 56 321-378 20-78 (190)
261 2y8e_A RAB-protein 6, GH09086P 98.1 3.3E-06 1.1E-10 77.6 5.3 56 322-378 14-74 (179)
262 3tkl_A RAS-related protein RAB 98.0 2.8E-06 9.4E-11 79.7 4.7 57 321-378 15-76 (196)
263 1m2o_B GTP-binding protein SAR 98.0 2.4E-06 8.2E-11 80.9 4.3 56 321-378 22-78 (190)
264 1f6b_A SAR1; gtpases, N-termin 98.0 2.9E-06 9.8E-11 81.0 4.8 55 322-378 25-80 (198)
265 2fh5_B SR-beta, signal recogni 98.0 3.6E-06 1.2E-10 80.6 5.5 56 321-378 6-65 (214)
266 1ky3_A GTP-binding protein YPT 98.0 1.9E-06 6.6E-11 79.4 3.4 58 321-378 7-69 (182)
267 2ce2_X GTPase HRAS; signaling 98.0 4.1E-06 1.4E-10 75.5 5.5 55 322-378 3-62 (166)
268 1vg8_A RAS-related protein RAB 98.0 2.9E-06 9.8E-11 80.5 4.5 57 321-378 7-68 (207)
269 2oil_A CATX-8, RAS-related pro 98.0 3E-06 1E-10 79.7 4.6 58 321-378 24-85 (193)
270 1r8s_A ADP-ribosylation factor 98.0 2.9E-06 9.9E-11 77.1 4.3 54 323-378 1-55 (164)
271 1pui_A ENGB, probable GTP-bind 98.0 9.6E-06 3.3E-10 77.3 7.9 135 107-244 27-185 (210)
272 1c1y_A RAS-related protein RAP 98.0 3.5E-06 1.2E-10 76.5 4.6 55 322-378 3-62 (167)
273 1udx_A The GTP-binding protein 98.0 3E-06 1E-10 91.3 4.4 136 107-244 158-311 (416)
274 2a5j_A RAS-related protein RAB 98.0 4.3E-06 1.5E-10 78.7 5.0 59 320-378 19-81 (191)
275 2bme_A RAB4A, RAS-related prot 98.0 4.1E-06 1.4E-10 77.9 4.7 57 321-378 9-70 (186)
276 1g7s_A Translation initiation 98.0 1.1E-05 3.6E-10 90.9 8.8 100 107-216 6-136 (594)
277 2xex_A Elongation factor G; GT 98.0 4.7E-06 1.6E-10 95.4 6.0 100 108-217 12-142 (693)
278 2erx_A GTP-binding protein DI- 98.0 2.8E-06 9.7E-11 77.3 3.4 56 322-378 3-62 (172)
279 2a9k_A RAS-related protein RAL 98.0 5.6E-06 1.9E-10 76.6 5.4 56 321-378 17-77 (187)
280 2hxs_A RAB-26, RAS-related pro 98.0 4.5E-06 1.5E-10 76.9 4.3 58 321-378 5-67 (178)
281 2o52_A RAS-related protein RAB 98.0 5.5E-06 1.9E-10 78.9 5.0 58 320-378 23-85 (200)
282 2iwr_A Centaurin gamma 1; ANK 97.9 5E-06 1.7E-10 76.8 4.5 58 321-379 6-66 (178)
283 3con_A GTPase NRAS; structural 97.9 6.7E-06 2.3E-10 76.9 5.3 55 322-378 21-80 (190)
284 3l0i_B RAS-related protein RAB 97.9 3E-06 1E-10 80.5 2.8 57 321-378 32-93 (199)
285 2bcg_Y Protein YP2, GTP-bindin 97.9 5.8E-06 2E-10 78.7 4.9 57 321-378 7-68 (206)
286 2b6h_A ADP-ribosylation factor 97.9 7.1E-06 2.4E-10 77.7 5.4 56 321-378 28-84 (192)
287 2yc2_C IFT27, small RAB-relate 97.9 4.2E-06 1.4E-10 79.1 3.8 57 322-378 20-84 (208)
288 2h5e_A Peptide chain release f 97.9 6.2E-06 2.1E-10 91.6 5.7 102 106-217 13-149 (529)
289 2zej_A Dardarin, leucine-rich 97.9 3.8E-06 1.3E-10 78.9 3.4 127 108-243 4-162 (184)
290 3bc1_A RAS-related protein RAB 97.9 7.8E-06 2.7E-10 76.0 5.4 58 321-378 10-81 (195)
291 3q85_A GTP-binding protein REM 97.9 7.9E-06 2.7E-10 74.5 5.3 57 322-378 2-62 (169)
292 2fu5_C RAS-related protein RAB 97.9 2.9E-06 9.9E-11 78.8 2.4 56 322-378 8-68 (183)
293 3dz8_A RAS-related protein RAB 97.9 2.5E-06 8.6E-11 80.4 1.9 58 321-378 22-83 (191)
294 2bov_A RAla, RAS-related prote 97.9 7.8E-06 2.7E-10 77.3 5.3 56 321-378 13-73 (206)
295 1h65_A Chloroplast outer envel 97.9 7.1E-06 2.4E-10 82.6 5.2 111 107-218 40-170 (270)
296 3kkq_A RAS-related protein M-R 97.9 9.9E-06 3.4E-10 75.2 5.7 58 320-378 16-77 (183)
297 2fn4_A P23, RAS-related protei 97.9 9.9E-06 3.4E-10 74.5 5.6 56 321-378 8-68 (181)
298 3cpj_B GTP-binding protein YPT 97.9 7.7E-06 2.6E-10 79.3 5.0 58 321-378 12-73 (223)
299 3nh6_A ATP-binding cassette SU 97.9 2.6E-07 9E-12 95.7 -5.8 138 323-495 81-227 (306)
300 3cbq_A GTP-binding protein REM 97.9 6E-06 2E-10 78.7 3.9 58 320-378 21-83 (195)
301 2atv_A RERG, RAS-like estrogen 97.9 1.2E-05 4E-10 76.0 5.7 58 321-379 27-88 (196)
302 3j2k_7 ERF3, eukaryotic polype 97.9 7.3E-06 2.5E-10 88.8 4.6 59 320-378 15-106 (439)
303 4dkx_A RAS-related protein RAB 97.9 3.3E-05 1.1E-09 75.7 8.7 124 108-244 15-162 (216)
304 1zd9_A ADP-ribosylation factor 97.9 9E-06 3.1E-10 76.4 4.5 57 320-378 20-78 (188)
305 2gco_A H9, RHO-related GTP-bin 97.9 1E-05 3.4E-10 77.0 4.8 57 321-378 24-84 (201)
306 2ew1_A RAS-related protein RAB 97.9 9.4E-06 3.2E-10 78.0 4.6 57 321-378 25-86 (201)
307 2qm8_A GTPase/ATPase; G protei 97.8 3E-05 1E-09 81.1 8.7 93 135-244 143-247 (337)
308 2q3h_A RAS homolog gene family 97.8 1.5E-05 5.1E-10 75.3 5.7 57 320-378 18-79 (201)
309 2hup_A RAS-related protein RAB 97.8 1.2E-05 4E-10 76.8 5.0 58 321-378 28-89 (201)
310 2j1l_A RHO-related GTP-binding 97.8 1.6E-05 5.4E-10 76.6 6.0 57 321-378 33-93 (214)
311 2gf0_A GTP-binding protein DI- 97.8 1.5E-05 5.2E-10 74.8 5.7 57 321-378 7-67 (199)
312 2fv8_A H6, RHO-related GTP-bin 97.8 1.3E-05 4.4E-10 76.6 5.1 56 322-378 25-84 (207)
313 1nrj_B SR-beta, signal recogni 97.8 6E-06 2.1E-10 79.3 2.8 55 320-378 10-66 (218)
314 3izq_1 HBS1P, elongation facto 97.8 6E-06 2.1E-10 93.2 3.0 59 320-378 165-256 (611)
315 2ged_A SR-beta, signal recogni 97.8 4.4E-06 1.5E-10 78.4 1.4 115 107-227 49-181 (193)
316 2cjw_A GTP-binding protein GEM 97.8 8.6E-06 2.9E-10 77.4 3.5 57 322-378 6-67 (192)
317 1dar_A EF-G, elongation factor 97.8 2.6E-05 8.8E-10 89.2 8.0 100 108-217 14-144 (691)
318 3oes_A GTPase rhebl1; small GT 97.8 1.1E-05 3.9E-10 76.5 3.9 57 321-378 23-83 (201)
319 2g3y_A GTP-binding protein GEM 97.8 2.1E-05 7.2E-10 76.6 5.8 127 107-244 38-189 (211)
320 2zej_A Dardarin, leucine-rich 97.8 1.8E-05 6.1E-10 74.2 5.0 56 323-378 3-67 (184)
321 3qf4_B Uncharacterized ABC tra 97.8 2.3E-06 7.9E-11 96.3 -1.4 136 323-493 382-526 (598)
322 1zo1_I IF2, translation initia 97.8 4.2E-06 1.4E-10 92.3 0.5 129 107-245 5-154 (501)
323 3mca_A HBS1, elongation factor 97.8 4.1E-06 1.4E-10 94.2 0.3 59 320-378 175-266 (592)
324 3def_A T7I23.11 protein; chlor 97.8 1.4E-05 4.7E-10 80.2 4.1 110 107-217 37-166 (262)
325 3vqt_A RF-3, peptide chain rel 97.7 2.4E-05 8.3E-10 87.2 6.4 75 133-217 93-167 (548)
326 4gzl_A RAS-related C3 botulinu 97.7 2.4E-05 8.2E-10 74.8 5.4 56 321-378 29-89 (204)
327 3c5c_A RAS-like protein 12; GD 97.7 2.6E-05 8.9E-10 73.4 5.5 57 321-379 20-81 (187)
328 3llu_A RAS-related GTP-binding 97.7 2.1E-05 7E-10 74.6 4.7 57 320-378 18-80 (196)
329 1mh1_A RAC1; GTP-binding, GTPa 97.7 2.5E-05 8.5E-10 72.2 5.2 55 322-378 5-64 (186)
330 3lvq_E ARF-GAP with SH3 domain 97.7 1.6E-05 5.4E-10 87.0 4.1 57 320-378 320-377 (497)
331 2x2e_A Dynamin-1; nitration, h 97.7 1.2E-05 4E-10 84.5 2.8 103 140-244 130-244 (353)
332 3p26_A Elongation factor 1 alp 97.7 1.4E-05 4.9E-10 87.4 3.6 58 321-378 32-122 (483)
333 2cjw_A GTP-binding protein GEM 97.7 4.7E-05 1.6E-09 72.2 6.7 127 108-244 8-158 (192)
334 2f9l_A RAB11B, member RAS onco 97.7 2.9E-05 1E-09 73.6 5.2 57 322-378 5-65 (199)
335 2f7s_A C25KG, RAS-related prot 97.7 1.4E-05 4.7E-10 76.7 2.9 58 321-378 24-95 (217)
336 3reg_A RHO-like small GTPase; 97.7 1.9E-05 6.5E-10 74.3 3.6 56 321-378 22-82 (194)
337 2dby_A GTP-binding protein; GD 97.7 5.7E-05 1.9E-09 80.1 7.4 74 109-183 4-111 (368)
338 2rdo_7 EF-G, elongation factor 97.6 9.3E-05 3.2E-09 84.8 9.4 74 134-217 69-149 (704)
339 1udx_A The GTP-binding protein 97.6 3.6E-05 1.2E-09 82.9 5.6 55 323-378 158-216 (416)
340 1m7b_A RND3/RHOE small GTP-bin 97.6 3.4E-05 1.2E-09 72.0 4.7 57 321-378 6-66 (184)
341 2g3y_A GTP-binding protein GEM 97.6 4.4E-05 1.5E-09 74.4 5.6 58 321-378 36-98 (211)
342 1n0u_A EF-2, elongation factor 97.6 3.6E-05 1.2E-09 89.9 5.5 101 105-215 18-163 (842)
343 3ihw_A Centg3; RAS, centaurin, 97.6 5.7E-05 2E-09 71.0 5.9 57 320-378 18-78 (184)
344 3qf4_A ABC transporter, ATP-bi 97.6 2.2E-06 7.5E-11 96.2 -4.9 138 323-495 370-516 (587)
345 2atx_A Small GTP binding prote 97.6 4.6E-05 1.6E-09 71.5 5.0 56 321-378 17-77 (194)
346 3b5x_A Lipid A export ATP-bind 97.6 7.7E-06 2.6E-10 91.6 -0.6 136 323-493 370-515 (582)
347 1oix_A RAS-related protein RAB 97.6 4.6E-05 1.6E-09 72.1 4.8 57 322-378 29-89 (191)
348 3bwd_D RAC-like GTP-binding pr 97.6 1.9E-05 6.7E-10 72.8 2.2 55 322-378 8-67 (182)
349 2j0v_A RAC-like GTP-binding pr 97.6 5E-05 1.7E-09 72.5 5.1 56 321-378 8-68 (212)
350 4a82_A Cystic fibrosis transme 97.6 2.6E-06 8.8E-11 95.5 -4.8 136 323-493 368-512 (578)
351 3izy_P Translation initiation 97.6 8E-06 2.7E-10 90.7 -0.8 56 322-378 4-63 (537)
352 3o47_A ADP-ribosylation factor 97.6 5.2E-05 1.8E-09 78.8 5.3 56 321-378 164-220 (329)
353 2dy1_A Elongation factor G; tr 97.6 0.00015 5E-09 82.6 9.4 72 134-215 68-139 (665)
354 3t1o_A Gliding protein MGLA; G 97.5 4E-05 1.4E-09 71.4 3.8 26 321-346 13-38 (198)
355 1gwn_A RHO-related GTP-binding 97.5 6.2E-05 2.1E-09 72.3 5.2 57 321-378 27-87 (205)
356 3g5u_A MCG1178, multidrug resi 97.5 3.9E-06 1.3E-10 102.2 -4.2 135 323-492 417-560 (1284)
357 3zvr_A Dynamin-1; hydrolase, D 97.5 9.4E-05 3.2E-09 85.2 7.4 29 321-349 50-78 (772)
358 2qag_A Septin-2, protein NEDD5 97.5 3.7E-05 1.3E-09 81.2 3.6 58 321-378 36-106 (361)
359 1jal_A YCHF protein; nucleotid 97.5 0.00015 5.2E-09 76.7 8.0 74 109-183 5-108 (363)
360 3t34_A Dynamin-related protein 97.5 7.5E-05 2.5E-09 78.3 5.4 24 323-346 35-58 (360)
361 3dpu_A RAB family protein; roc 97.5 0.00011 3.7E-09 81.4 6.9 59 320-378 39-109 (535)
362 2qag_A Septin-2, protein NEDD5 97.5 5.5E-05 1.9E-09 79.8 4.2 134 108-244 39-220 (361)
363 3b60_A Lipid A export ATP-bind 97.5 7.3E-06 2.5E-10 91.8 -2.7 136 323-493 370-515 (582)
364 1zo1_I IF2, translation initia 97.5 2.2E-05 7.7E-10 86.4 1.1 57 321-378 3-62 (501)
365 3q5d_A Atlastin-1; G protein, 97.5 3.9E-05 1.3E-09 83.3 2.9 60 322-381 67-154 (447)
366 3q3j_B RHO-related GTP-binding 97.5 5.7E-05 2E-09 72.9 3.7 57 321-378 26-86 (214)
367 1yrb_A ATP(GTP)binding protein 97.4 0.00021 7.2E-09 70.6 7.4 75 140-219 109-188 (262)
368 3p32_A Probable GTPase RV1496/ 97.4 9.6E-05 3.3E-09 77.6 5.1 38 321-358 78-121 (355)
369 2yl4_A ATP-binding cassette SU 97.4 8.2E-06 2.8E-10 91.7 -3.8 136 323-493 371-518 (595)
370 2qm8_A GTPase/ATPase; G protei 97.4 0.00013 4.5E-09 76.2 5.6 23 322-344 55-77 (337)
371 2wsm_A Hydrogenase expression/ 97.4 9.8E-05 3.4E-09 70.9 4.0 37 322-358 30-71 (221)
372 2p67_A LAO/AO transport system 97.4 0.0001 3.5E-09 77.0 4.5 37 322-358 56-98 (341)
373 1f60_A Elongation factor EEF1A 97.4 3E-05 1E-09 84.4 0.4 57 322-378 7-96 (458)
374 1wb1_A Translation elongation 97.3 5.7E-05 1.9E-09 82.8 2.3 57 322-378 19-84 (482)
375 3th5_A RAS-related C3 botulinu 96.5 2.9E-05 1E-09 73.7 0.0 56 321-378 29-89 (204)
376 2c78_A Elongation factor TU-A; 97.3 5.6E-05 1.9E-09 80.7 2.1 58 321-378 10-86 (405)
377 1kk1_A EIF2gamma; initiation o 97.3 0.0001 3.4E-09 78.9 4.0 59 320-378 8-94 (410)
378 2f9l_A RAB11B, member RAS onco 97.3 0.00021 7E-09 67.7 5.8 124 108-244 7-154 (199)
379 2elf_A Protein translation elo 97.3 8.3E-05 2.8E-09 78.8 3.3 46 324-378 23-71 (370)
380 3c5h_A Glucocorticoid receptor 97.3 0.00036 1.2E-08 69.5 7.6 72 171-244 162-241 (255)
381 1d2e_A Elongation factor TU (E 97.3 9.6E-05 3.3E-09 78.8 3.5 57 322-378 3-77 (397)
382 1zun_B Sulfate adenylate trans 97.3 9.8E-05 3.3E-09 79.6 3.5 26 321-346 23-48 (434)
383 2wkq_A NPH1-1, RAS-related C3 97.3 0.00022 7.5E-09 72.6 5.6 56 321-378 154-214 (332)
384 1s0u_A EIF-2-gamma, translatio 97.3 0.00016 5.6E-09 77.2 4.8 58 321-378 7-92 (408)
385 3sop_A Neuronal-specific septi 97.3 0.00011 3.9E-09 74.3 3.3 57 323-379 3-72 (270)
386 4dkx_A RAS-related protein RAB 97.2 0.00026 8.9E-09 69.2 5.2 57 322-378 13-73 (216)
387 3tr5_A RF-3, peptide chain rel 97.2 5.3E-05 1.8E-09 84.0 -0.1 57 322-378 13-93 (528)
388 2wsm_A Hydrogenase expression/ 97.2 0.00019 6.4E-09 69.0 3.7 68 171-244 129-200 (221)
389 1jny_A EF-1-alpha, elongation 97.2 0.00011 3.7E-09 79.4 1.8 58 321-378 5-95 (435)
390 2h5e_A Peptide chain release f 97.1 0.00016 5.5E-09 80.1 3.2 57 322-378 13-93 (529)
391 3sjy_A Translation initiation 97.1 0.00011 3.9E-09 78.3 1.9 26 320-345 6-31 (403)
392 2qag_B Septin-6, protein NEDD5 97.1 0.00031 1.1E-08 75.8 5.1 57 323-379 43-107 (427)
393 3j25_A Tetracycline resistance 97.1 9.8E-05 3.4E-09 83.7 1.1 75 133-217 60-134 (638)
394 2j37_W Signal recognition part 97.0 0.0007 2.4E-08 74.6 7.1 32 321-352 100-137 (504)
395 2xex_A Elongation factor G; GT 97.0 0.00015 5.2E-09 82.9 1.8 58 321-378 9-86 (693)
396 2ixe_A Antigen peptide transpo 97.0 2E-05 6.7E-10 80.1 -5.1 41 452-495 152-193 (271)
397 4fn5_A EF-G 1, elongation fact 97.0 0.00071 2.4E-08 77.5 7.1 69 139-217 84-152 (709)
398 2qnr_A Septin-2, protein NEDD5 97.0 0.00033 1.1E-08 71.9 3.9 57 322-378 18-87 (301)
399 2hf9_A Probable hydrogenase ni 96.9 0.00062 2.1E-08 65.5 4.9 35 322-356 38-77 (226)
400 1g7s_A Translation initiation 96.9 0.00019 6.5E-09 80.7 1.2 55 322-378 5-81 (594)
401 1oix_A RAS-related protein RAB 96.9 0.00055 1.9E-08 64.6 4.1 128 107-244 30-178 (191)
402 2qag_C Septin-7; cell cycle, c 96.9 0.00031 1.1E-08 75.6 2.2 58 321-379 30-100 (418)
403 3g5u_A MCG1178, multidrug resi 96.9 0.00032 1.1E-08 85.5 2.5 135 323-492 1060-1205(1284)
404 1r5b_A Eukaryotic peptide chai 96.8 0.00025 8.6E-09 77.3 1.2 57 322-378 43-132 (467)
405 2ff7_A Alpha-hemolysin translo 96.8 2.8E-05 9.6E-10 77.8 -6.2 40 453-495 142-182 (247)
406 1tq4_A IIGP1, interferon-induc 96.8 0.0013 4.6E-08 70.6 6.2 59 322-380 69-133 (413)
407 1n0u_A EF-2, elongation factor 96.8 0.00065 2.2E-08 79.4 4.1 27 322-348 19-45 (842)
408 1yrb_A ATP(GTP)binding protein 96.7 0.00039 1.3E-08 68.6 1.6 34 322-355 14-52 (262)
409 3cb4_D GTP-binding protein LEP 96.7 0.00056 1.9E-08 76.9 2.7 57 322-378 4-82 (599)
410 1mv5_A LMRA, multidrug resista 96.7 0.00025 8.4E-09 70.6 -0.3 24 323-346 29-52 (243)
411 3avx_A Elongation factor TS, e 96.6 0.00074 2.5E-08 80.7 3.4 59 320-378 294-370 (1289)
412 3gd7_A Fusion complex of cysti 96.6 7.6E-05 2.6E-09 79.7 -4.5 23 324-346 49-71 (390)
413 1dar_A EF-G, elongation factor 96.6 0.00079 2.7E-08 77.0 3.0 57 322-378 12-88 (691)
414 4g1u_C Hemin import ATP-bindin 96.6 0.00051 1.7E-08 69.4 1.1 41 455-495 140-184 (266)
415 3ec1_A YQEH GTPase; atnos1, at 96.6 4.8E-05 1.6E-09 80.6 -6.8 132 106-240 162-313 (369)
416 2ghi_A Transport protein; mult 96.5 0.00047 1.6E-08 69.4 0.3 39 453-494 152-191 (260)
417 2ywe_A GTP-binding protein LEP 96.4 0.0007 2.4E-08 76.1 1.3 57 322-378 6-84 (600)
418 2rdo_7 EF-G, elongation factor 96.4 0.0017 6E-08 74.3 4.2 57 322-378 10-93 (704)
419 3c5h_A Glucocorticoid receptor 96.4 0.0009 3.1E-08 66.6 1.6 26 320-345 17-51 (255)
420 2qag_B Septin-6, protein NEDD5 96.3 0.0022 7.4E-08 69.2 4.1 128 109-239 45-217 (427)
421 3tif_A Uncharacterized ABC tra 96.2 0.00025 8.5E-09 70.3 -3.4 39 454-495 143-182 (235)
422 2qi9_C Vitamin B12 import ATP- 96.2 0.0015 5.1E-08 65.3 2.3 43 453-495 123-170 (249)
423 3h2y_A GTPase family protein; 96.2 0.00018 6.2E-09 76.1 -4.7 121 107-229 161-300 (368)
424 2j37_W Signal recognition part 96.2 0.0087 3E-07 65.9 8.3 92 136-239 180-275 (504)
425 2v3c_C SRP54, signal recogniti 96.0 0.027 9.4E-07 60.7 10.6 92 136-238 177-272 (432)
426 1ji0_A ABC transporter; ATP bi 95.9 0.00077 2.6E-08 66.9 -1.4 42 451-495 134-176 (240)
427 3tui_C Methionine import ATP-b 95.9 0.00036 1.2E-08 73.9 -4.3 39 454-495 161-200 (366)
428 3fvq_A Fe(3+) IONS import ATP- 95.9 0.0007 2.4E-08 71.5 -2.2 23 324-346 32-54 (359)
429 2v3c_C SRP54, signal recogniti 95.9 0.0038 1.3E-07 67.5 3.5 23 322-344 99-121 (432)
430 1v43_A Sugar-binding transport 95.8 0.0014 4.7E-08 69.6 -0.2 23 324-346 39-61 (372)
431 3r7w_B Gtpase2, GTP-binding pr 95.8 0.005 1.7E-07 64.2 3.9 55 324-378 1-57 (331)
432 1cip_A Protein (guanine nucleo 95.7 0.0037 1.3E-07 65.7 2.6 71 137-215 190-273 (353)
433 2dy1_A Elongation factor G; tr 95.7 0.0047 1.6E-07 70.3 3.4 57 322-378 9-85 (665)
434 2yyz_A Sugar ABC transporter, 95.6 0.0011 3.9E-08 69.9 -2.1 23 324-346 31-53 (359)
435 3rlf_A Maltose/maltodextrin im 95.4 0.00086 2.9E-08 71.3 -3.7 23 324-346 31-53 (381)
436 3dm5_A SRP54, signal recogniti 95.4 0.03 1E-06 60.6 8.1 23 321-343 99-121 (443)
437 1zcb_A G alpha I/13; GTP-bindi 95.3 0.01 3.5E-07 62.5 4.1 70 137-215 198-281 (362)
438 3ney_A 55 kDa erythrocyte memb 95.2 0.0045 1.5E-07 59.9 1.0 38 323-360 20-58 (197)
439 2qag_C Septin-7; cell cycle, c 95.2 0.031 1.1E-06 60.0 7.6 70 172-244 139-213 (418)
440 3r7w_B Gtpase2, GTP-binding pr 95.1 0.033 1.1E-06 58.0 7.2 73 140-218 46-122 (331)
441 2hf9_A Probable hydrogenase ni 95.0 0.048 1.7E-06 52.0 7.8 91 137-244 116-210 (226)
442 4ido_A Atlastin-1; GTPase, GTP 95.0 0.016 5.6E-07 62.8 4.6 61 321-381 66-154 (457)
443 3szr_A Interferon-induced GTP- 94.4 0.031 1E-06 62.9 5.2 23 324-346 47-69 (608)
444 1azs_C GS-alpha; complex (lyas 94.0 0.029 9.8E-07 60.0 3.8 70 137-216 214-298 (402)
445 3ohm_A Guanine nucleotide-bind 94.0 0.019 6.6E-07 59.7 2.3 72 136-216 163-248 (327)
446 1ye8_A Protein THEP1, hypothet 94.0 0.016 5.6E-07 54.6 1.5 24 324-347 2-25 (178)
447 3c8u_A Fructokinase; YP_612366 93.9 0.042 1.4E-06 52.4 4.5 25 322-346 22-46 (208)
448 2qnr_A Septin-2, protein NEDD5 93.8 0.14 4.9E-06 52.1 8.4 49 194-242 147-199 (301)
449 1j8m_F SRP54, signal recogniti 93.8 0.03 1E-06 57.3 3.2 57 322-378 98-192 (297)
450 1kgd_A CASK, peripheral plasma 93.7 0.02 6.7E-07 53.6 1.5 23 324-346 7-29 (180)
451 1lvg_A Guanylate kinase, GMP k 93.7 0.018 6.2E-07 54.9 1.3 23 324-346 6-28 (198)
452 1zp6_A Hypothetical protein AT 93.6 0.03 1E-06 52.2 2.7 23 323-345 10-32 (191)
453 4fid_A G protein alpha subunit 93.6 0.059 2E-06 56.3 5.1 72 136-216 157-242 (340)
454 2xtz_A Guanine nucleotide-bind 93.5 0.024 8.1E-07 59.6 2.0 68 140-215 183-263 (354)
455 1ko7_A HPR kinase/phosphatase; 93.4 0.08 2.8E-06 54.7 5.7 24 323-346 145-168 (314)
456 2ohf_A Protein OLA1, GTP-bindi 93.4 0.036 1.2E-06 59.1 3.2 76 107-183 23-128 (396)
457 3kl4_A SRP54, signal recogniti 93.4 0.089 3E-06 56.8 6.3 75 300-376 76-189 (433)
458 3sop_A Neuronal-specific septi 93.4 0.21 7.3E-06 50.1 8.7 62 170-234 110-176 (270)
459 3dm5_A SRP54, signal recogniti 93.3 0.39 1.3E-05 51.9 11.2 95 137-239 180-274 (443)
460 3l82_B F-box only protein 4; T 93.3 0.097 3.3E-06 51.4 5.6 82 163-244 116-209 (227)
461 1np6_A Molybdopterin-guanine d 93.2 0.025 8.4E-07 53.4 1.3 23 323-345 7-29 (174)
462 3tr0_A Guanylate kinase, GMP k 93.1 0.026 8.9E-07 53.1 1.3 23 324-346 9-31 (205)
463 2xxa_A Signal recognition part 93.1 0.11 3.7E-06 56.1 6.3 23 321-343 99-121 (433)
464 1znw_A Guanylate kinase, GMP k 93.0 0.027 9.2E-07 53.8 1.3 23 324-346 22-44 (207)
465 3tau_A Guanylate kinase, GMP k 92.9 0.033 1.1E-06 53.3 1.8 24 323-346 9-32 (208)
466 1z6g_A Guanylate kinase; struc 92.7 0.032 1.1E-06 54.1 1.3 23 324-346 25-47 (218)
467 3a00_A Guanylate kinase, GMP k 92.5 0.033 1.1E-06 52.2 1.2 23 324-346 3-25 (186)
468 2pcj_A ABC transporter, lipopr 92.3 0.051 1.7E-06 53.1 2.2 23 324-346 32-54 (224)
469 3vqt_A RF-3, peptide chain rel 92.3 0.037 1.3E-06 61.4 1.4 57 323-379 32-112 (548)
470 3asz_A Uridine kinase; cytidin 92.3 0.049 1.7E-06 51.6 2.0 24 323-346 7-30 (211)
471 2j41_A Guanylate kinase; GMP, 92.2 0.05 1.7E-06 51.1 2.0 24 323-346 7-30 (207)
472 3lw7_A Adenylate kinase relate 92.1 0.054 1.8E-06 48.8 2.0 20 323-342 2-21 (179)
473 4gp7_A Metallophosphoesterase; 92.0 0.053 1.8E-06 50.3 1.9 22 323-344 10-31 (171)
474 1kag_A SKI, shikimate kinase I 91.9 0.046 1.6E-06 50.0 1.3 23 323-345 5-27 (173)
475 2bbw_A Adenylate kinase 4, AK4 91.8 0.065 2.2E-06 52.4 2.4 21 323-343 28-48 (246)
476 2bdt_A BH3686; alpha-beta prot 91.8 0.048 1.6E-06 50.9 1.3 21 324-344 4-24 (189)
477 2cbz_A Multidrug resistance-as 91.7 0.082 2.8E-06 52.1 3.0 41 452-495 123-164 (237)
478 2qor_A Guanylate kinase; phosp 91.6 0.063 2.1E-06 51.0 1.9 23 323-345 13-35 (204)
479 3lnc_A Guanylate kinase, GMP k 91.4 0.064 2.2E-06 51.9 1.8 24 323-346 28-52 (231)
480 1g6h_A High-affinity branched- 91.4 0.069 2.4E-06 53.2 2.1 50 443-495 135-190 (257)
481 1s96_A Guanylate kinase, GMP k 91.4 0.065 2.2E-06 52.2 1.8 24 323-346 17-40 (219)
482 1b0u_A Histidine permease; ABC 91.4 0.069 2.4E-06 53.4 2.1 41 452-495 149-190 (262)
483 4eun_A Thermoresistant glucoki 91.3 0.068 2.3E-06 50.6 1.8 23 323-345 30-52 (200)
484 1ly1_A Polynucleotide kinase; 91.3 0.076 2.6E-06 48.5 2.1 22 323-344 3-24 (181)
485 3b85_A Phosphate starvation-in 91.3 0.07 2.4E-06 51.6 1.9 22 324-345 24-45 (208)
486 2onk_A Molybdate/tungstate ABC 91.3 0.071 2.4E-06 52.8 2.0 23 324-346 26-48 (240)
487 3gfo_A Cobalt import ATP-bindi 91.2 0.074 2.5E-06 53.8 2.1 40 453-495 140-180 (275)
488 2pze_A Cystic fibrosis transme 91.2 0.075 2.6E-06 52.0 2.1 41 453-496 127-168 (229)
489 1sgw_A Putative ABC transporte 91.2 0.07 2.4E-06 51.9 1.8 23 324-346 37-59 (214)
490 1rz3_A Hypothetical protein rb 91.1 0.13 4.6E-06 48.7 3.7 24 322-345 22-45 (201)
491 2v9p_A Replication protein E1; 91.1 0.064 2.2E-06 55.2 1.5 24 323-346 127-150 (305)
492 1cke_A CK, MSSA, protein (cyti 91.1 0.069 2.4E-06 51.1 1.6 24 323-346 6-29 (227)
493 2if2_A Dephospho-COA kinase; a 91.0 0.071 2.4E-06 50.2 1.6 21 324-344 3-23 (204)
494 2olj_A Amino acid ABC transpor 91.0 0.08 2.7E-06 53.2 2.1 23 324-346 52-74 (263)
495 1jjv_A Dephospho-COA kinase; P 90.9 0.086 2.9E-06 49.8 2.1 22 323-344 3-24 (206)
496 2i3b_A HCR-ntpase, human cance 90.9 0.061 2.1E-06 51.3 1.0 23 324-346 3-25 (189)
497 2d2e_A SUFC protein; ABC-ATPas 90.9 0.08 2.7E-06 52.5 1.9 22 324-345 31-52 (250)
498 1knq_A Gluconate kinase; ALFA/ 90.9 0.074 2.5E-06 48.8 1.5 23 323-345 9-31 (175)
499 2f1r_A Molybdopterin-guanine d 90.8 0.039 1.3E-06 51.9 -0.4 23 324-346 4-26 (171)
500 3kb2_A SPBC2 prophage-derived 90.8 0.083 2.8E-06 47.8 1.8 22 324-345 3-24 (173)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-41 Score=350.30 Aligned_cols=257 Identities=23% Similarity=0.311 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEe
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFS 238 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~S 238 (595)
...++|+++.++++|+|++|+|||+|.+++++.+++++ .++|.++|+||+||++++..+.|.+||++.|++++++|
T Consensus 11 ~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iS 86 (282)
T 1puj_A 11 AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN 86 (282)
T ss_dssp THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 35689999999999999999999999999999998886 47999999999999998888999999987889999999
Q ss_pred cccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhh---cccCC
Q psy9995 239 ATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSF---HDVNI 315 (595)
Q Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~---~~~~~ 315 (595)
|.++.+..+. .+.+.+++... ...
T Consensus 87 A~~~~gi~~L---------------------------------------------------~~~i~~~l~~~~~~~~~-- 113 (282)
T 1puj_A 87 SVNGQGLNQI---------------------------------------------------VPASKEILQEKFDRMRA-- 113 (282)
T ss_dssp TTTCTTGGGH---------------------------------------------------HHHHHHHHHHHHHHHHH--
T ss_pred CCCcccHHHH---------------------------------------------------HHHHHHHHHHHHHHHHh--
Confidence 9877652100 01111111110 000
Q ss_pred CCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchh--HHHHhc
Q psy9995 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKA--DMILNG 393 (595)
Q Consensus 316 ~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~--eli~~g 393 (595)
.......++|++||+||||||||||+|++.+.+.|+++||+|++.|++.++..+.|+||||+.+|++..... .+++.|
T Consensus 114 ~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 193 (282)
T 1puj_A 114 KGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTG 193 (282)
T ss_dssp TTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCCCCSCCCCHHHHHHHHHHT
T ss_pred cCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCCCCCHHHHHHHHHhC
Confidence 112345689999999999999999999999989999999999999999999999999999999998765543 355666
Q ss_pred CCc-----hhhhhhhhhhHHHHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcCccccCCCCCHHHHH
Q psy9995 394 ILP-----IDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSA 468 (595)
Q Consensus 394 il~-----id~lrd~~~~v~~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~gG~pD~~rAA 468 (595)
.+. .+.+..+ .+..+..+.| ..|+.+|++..+. .+..|||+++|++||++.+||+||+.+||
T Consensus 194 ~i~~~~~~~~~~~~~--~~~~l~~~~~-~~l~~~y~~~~~~----------~~~~~~l~~~a~~~g~~~kgg~~d~~~aa 260 (282)
T 1puj_A 194 AIKDSIINLQDVAVF--GLRFLEEHYP-ERLKERYGLDEIP----------EDIAELFDAIGEKRGCLMSGGLINYDKTT 260 (282)
T ss_dssp SSCTTSSCHHHHHHH--HHHHHHHHCH-HHHHHHTTCSSCC----------SSHHHHHHHHHHHHTCBCSTTCBCHHHHH
T ss_pred CcchhhCCHHHHHHH--HHHHHHHhCh-HHHHHHcCCCCCC----------CCHHHHHHHHHHHhCCcccCCcccHHHHH
Confidence 553 3333222 2333444544 3577789984211 14789999999999999999999999999
Q ss_pred HHHHHHHHhCCceeecC
Q psy9995 469 RYILKDFVNGHLLYCQA 485 (595)
Q Consensus 469 r~iLkD~~~GKL~~~~~ 485 (595)
+.||+||++|||+++..
T Consensus 261 ~~~l~d~~~Gklg~~~l 277 (282)
T 1puj_A 261 EVIIRDIRTEKFGRLSF 277 (282)
T ss_dssp HHHHHHHHTTTTCSCCS
T ss_pred HHHHHHHHcCCCCceEC
Confidence 99999999999996643
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=3e-38 Score=321.88 Aligned_cols=231 Identities=23% Similarity=0.339 Sum_probs=176.9
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecc
Q psy9995 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSAT 240 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~ 240 (595)
.++++++.++++|+|++|+|||+|.+++++.++ ++ ++|.|+|+||+||++++..+.|.++|++.|+++ ++||.
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~ 83 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHK 83 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCT
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECC
Confidence 478999999999999999999999999988776 54 799999999999999888899999998888888 99997
Q ss_pred cCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCC
Q psy9995 241 NIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNP 320 (595)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~ 320 (595)
++.+ .++|.+.+...
T Consensus 84 ~~~g-------------------------------------------------------i~~L~~~l~~~---------- 98 (262)
T 3cnl_A 84 GEPR-------------------------------------------------------KVLLKKLSFDR---------- 98 (262)
T ss_dssp TSCH-------------------------------------------------------HHHHHHHCCCT----------
T ss_pred CCcC-------------------------------------------------------HHHHHHHHHHh----------
Confidence 7654 34555544311
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCc-ccchhHHHHhcCCchhh
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSF-VFSKADMILNGILPIDQ 399 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f-~~tk~eli~~gil~id~ 399 (595)
.+++++||.||||||||||+|++...+.++++||+|++.|++.++.++.|+||||+..|.+ .+.... .+.
T Consensus 99 -~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~--------~~~ 169 (262)
T 3cnl_A 99 -LARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAA--------KLL 169 (262)
T ss_dssp -TCEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECCCCCCSHHHHH--------HHH
T ss_pred -hhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcccCcCCCChhhc--------ccc
Confidence 0689999999999999999999998889999999999999999999999999999999987 332221 223
Q ss_pred hhhhhhhHH----HHhhhcChhHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHhhhhcCccccCCCCCHHHHHHHHHHHH
Q psy9995 400 MRDHVPAVN----MLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDF 475 (595)
Q Consensus 400 lrd~~~~v~----~l~~~i~~~~le~~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~rG~~~~gG~pD~~rAAr~iLkD~ 475 (595)
+.+....+. ++..+++ ..|...|+++. . ..|||+++|+++|++.+||.||+.+||+.||+||
T Consensus 170 ~~d~~~~~~~~~~~l~~~~~-~~l~~~y~i~~------~-------d~~~l~~ia~~~g~~~kgg~~d~~~aa~~~l~d~ 235 (262)
T 3cnl_A 170 LVGSLPVERIEDQRIFERAF-EIFARSIGIES------S-------FSEFFEDFARKRGLLKKGGVPDIERALMLFFTEV 235 (262)
T ss_dssp HTTSSCGGGCCCHHHHHHHH-HHHHHHHTCCC------C-------HHHHHHHHHHHTTCBCGGGCBCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCH-HHHHHHcCcCC------C-------cHHHHHHHHHHhCCccCCCcccHHHHHHHHHHHH
Confidence 333322322 2333333 34667899841 1 1689999999999999999999999999999999
Q ss_pred HhCCceeecCC
Q psy9995 476 VNGHLLYCQAP 486 (595)
Q Consensus 476 ~~GKL~~~~~P 486 (595)
++|||+++..|
T Consensus 236 ~~g~l~~~~l~ 246 (262)
T 3cnl_A 236 AQGKAGRVSFE 246 (262)
T ss_dssp HTTTTCSCCSC
T ss_pred HcCCCCceECC
Confidence 99999976544
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.5e-24 Score=235.59 Aligned_cols=217 Identities=22% Similarity=0.311 Sum_probs=147.6
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccCh-hhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITP-YEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~-~ern~e~~rql~~vie~s 172 (595)
.+.|-.|||+||||++|.|.+...+ ...+|.+..+.|+||+|+.... ......+.++....++.+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 4567789999999999999876543 2356889999999999986432 222345677888899999
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCCcc
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEGDE 251 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~~~ 251 (595)
|+||+|+|++++++..+..+..+++. .++|+|||+||+|+........+.+++ +.|. +++.+||+++.+..+
T Consensus 83 d~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~---- 155 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDT---- 155 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHH----
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHH----
Confidence 99999999999988777778787764 478999999999986431222223443 5566 788999998876100
Q ss_pred chhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhccc-CCCCCCCCceEEEEeec
Q psy9995 252 ELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDV-NIPRMNPDVMTIGLVGY 330 (595)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~-~~~~~~~~~i~i~lvG~ 330 (595)
+ .+.+.+.+...... .........++|++||.
T Consensus 156 ---------------------------------------------L--~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~ 188 (439)
T 1mky_A 156 ---------------------------------------------M--LETIIKKLEEKGLDLESKPEITDAIKVAIVGR 188 (439)
T ss_dssp ---------------------------------------------H--HHHHHHHHHHTTCCSSSCCCCCSCEEEEEECS
T ss_pred ---------------------------------------------H--HHHHHHhcccccccchhccccccCceEEEECC
Confidence 0 11222222211000 00001234689999999
Q ss_pred CCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 331 PNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 331 pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
||||||||+|+|++...+.|++.||+|++... +.+ +..+.++||||+.
T Consensus 189 ~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 189 PNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239 (439)
T ss_dssp TTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred CCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCc
Confidence 99999999999999988899999999998643 333 4468899999985
No 4
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.1e-24 Score=236.46 Aligned_cols=213 Identities=22% Similarity=0.286 Sum_probs=139.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+.|-.+||+||||++|.|.+...+ ...+|.+..+.|+||+|+..........+.++....++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 35678899999999999999754321 3457889999999999986443333446677788899999
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCCcc
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEGDE 251 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~~~ 251 (595)
|+||+|+|++++++..+..+.++++ ..++|+|||+||+|+.+... .+.+++ +.|. +++++||+++.+
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~--~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~g------- 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILY--RTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLG------- 151 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHT--TCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBT-------
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCC-------
Confidence 9999999999998877777777765 46799999999999975421 122222 4455 788999988766
Q ss_pred chhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhccc-CCCCCCCCceEEEEeec
Q psy9995 252 ELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDV-NIPRMNPDVMTIGLVGY 330 (595)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~-~~~~~~~~~i~i~lvG~ 330 (595)
.++|++.+....+. .........++|++||.
T Consensus 152 ------------------------------------------------v~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~ 183 (436)
T 2hjg_A 152 ------------------------------------------------LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGR 183 (436)
T ss_dssp ------------------------------------------------HHHHHHHHHHTGGGCCSSCCCTTCEEEEEECS
T ss_pred ------------------------------------------------hHHHHHHHHHhcCccccccccccCcEEEEEcC
Confidence 23333333222111 00011235689999999
Q ss_pred CCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCcc
Q psy9995 331 PNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVM 379 (595)
Q Consensus 331 pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~ 379 (595)
||||||||+|+|++...+.++..||+|++... +.. +..+.|+||||+..
T Consensus 184 ~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 184 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 99999999999999988889999999998643 333 45799999999864
No 5
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=5.2e-23 Score=224.60 Aligned_cols=216 Identities=21% Similarity=0.287 Sum_probs=146.2
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
....+.|-.+||+||||++|.|.+...+ ...+|.+..+.|+||+|+.........++.+++...++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 4567889999999999999999754321 35678899999999999875444445667778888999
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCCCCCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYDDIPEG 249 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~~~~~~ 249 (595)
.+|+||+|+|++++++..+..+.++++ ..++|+|||+||+|+.... ..+.+++ ..|. .++++||+++.+
T Consensus 102 ~ad~il~VvD~~~~~~~~d~~l~~~l~--~~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iSA~~g~g----- 171 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAADEEVAKILY--RTKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPISGTHGLG----- 171 (456)
T ss_dssp HCSEEEEEEESSSCSCHHHHHHHHHHT--TCCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTT-----
T ss_pred hCCEEEEEEeCCCCCChHHHHHHHHHH--HcCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEeecccccc-----
Confidence 999999999999988877777777776 4689999999999997542 2233333 3343 567899988765
Q ss_pred ccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhccc-CCCCCCCCceEEEEe
Q psy9995 250 DEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDV-NIPRMNPDVMTIGLV 328 (595)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~-~~~~~~~~~i~i~lv 328 (595)
.++|++.+....+. .........++|+++
T Consensus 172 --------------------------------------------------v~~L~~~i~~~l~~~~~~~~~~~~~ki~iv 201 (456)
T 4dcu_A 172 --------------------------------------------------LGDLLDAVAEHFKNIPETKYNEEVIQFCLI 201 (456)
T ss_dssp --------------------------------------------------HHHHHHHHHTTGGGSCSSCCCTTCEEEEEE
T ss_pred --------------------------------------------------hHHHHHHHHhhcccccccccccccceeEEe
Confidence 23343333222111 001122446899999
Q ss_pred ecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEc-CCceEEEeCCCCccC
Q psy9995 329 GYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFV-DDELLLCDCPGLVMP 380 (595)
Q Consensus 329 G~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~-~~~~~liDtPGl~~p 380 (595)
|.||||||||+|+|++...+.++..||+|+++. .+.. +..+.|+||||+...
T Consensus 202 G~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 202 GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp CSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred cCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 999999999999999988899999999999963 3333 457899999998643
No 6
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.86 E-value=2e-21 Score=206.84 Aligned_cols=153 Identities=25% Similarity=0.361 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH----HHHHHHHHH-HhhCCC---
Q psy9995 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR----KQRCYWTKY-FNSVNV--- 232 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~----~~~~~w~~~-~~~~gi--- 232 (595)
+.+.+..+.+.+|+||+|+|+++|.....+.+.+++. ++|+|+|+||+||++. +....|... ++..|+
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~----~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA----DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPV 136 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT----TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhC----CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcc
Confidence 3444555668999999999999999888888887753 7899999999999875 345677653 566676
Q ss_pred eEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcc
Q psy9995 233 AVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHD 312 (595)
Q Consensus 233 ~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~ 312 (595)
+++++||+++.+ .++|.+.+.....
T Consensus 137 ~v~~iSA~~g~g-------------------------------------------------------i~~L~~~I~~~~~ 161 (369)
T 3ec1_A 137 DVCLVSAAKGIG-------------------------------------------------------MAKVMEAINRYRE 161 (369)
T ss_dssp EEEECBTTTTBT-------------------------------------------------------HHHHHHHHHHHHT
T ss_pred cEEEEECCCCCC-------------------------------------------------------HHHHHHHHHhhcc
Confidence 788999988765 4456665554332
Q ss_pred cCCCCCCCCceEEEEeecCCCCcchHhhhhcCc-----ceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCC
Q psy9995 313 VNIPRMNPDVMTIGLVGYPNVGKSSTINALLNA-----KKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 313 ~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~-----~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~ 381 (595)
+ .+|++||.||||||||||+|++. ..+.+++.||+|++.+.+.++.++.++||||+..+.
T Consensus 162 ~---------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 162 G---------GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp T---------SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred c---------CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 2 46999999999999999999987 678999999999999999998899999999998664
No 7
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.84 E-value=3.5e-21 Score=205.02 Aligned_cols=153 Identities=27% Similarity=0.382 Sum_probs=115.7
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH----HHHHHHHH-HhhCCC---
Q psy9995 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK----QRCYWTKY-FNSVNV--- 232 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~----~~~~w~~~-~~~~gi--- 232 (595)
+.+.+..+.+.+|+||+|+|+++|.....+.+.+++ .++|+|+|+||+||++.. ....|... ++..|+
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPE 134 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcc
Confidence 334444455567799999999998766667777664 378999999999998753 45677654 456677
Q ss_pred eEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcc
Q psy9995 233 AVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHD 312 (595)
Q Consensus 233 ~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~ 312 (595)
+++++||+++.+ .++|.+.+.....
T Consensus 135 ~v~~iSA~~g~g-------------------------------------------------------i~~L~~~l~~~~~ 159 (368)
T 3h2y_A 135 DVFLISAAKGQG-------------------------------------------------------IAELADAIEYYRG 159 (368)
T ss_dssp EEEECCTTTCTT-------------------------------------------------------HHHHHHHHHHHHT
T ss_pred cEEEEeCCCCcC-------------------------------------------------------HHHHHhhhhhhcc
Confidence 789999988765 4556666654332
Q ss_pred cCCCCCCCCceEEEEeecCCCCcchHhhhhcCcc------eeEecCCCCCceeeEEEEcCCceEEEeCCCCccCC
Q psy9995 313 VNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAK------KVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 313 ~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~------kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~ 381 (595)
+ .+|++||.||||||||||+|++.. ...+|..||+|++.+.+.++.++.++||||+..+.
T Consensus 160 ~---------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 160 G---------KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp T---------SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTT
T ss_pred c---------ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHH
Confidence 2 469999999999999999999863 56799999999999999998889999999998664
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.80 E-value=6.2e-21 Score=198.28 Aligned_cols=162 Identities=20% Similarity=0.287 Sum_probs=120.3
Q ss_pred CCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHH----HH
Q psy9995 147 EDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQ----RC 221 (595)
Q Consensus 147 T~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~----~~ 221 (595)
+.|++....+|...++|+ +++++|+|++|+|+++|.+..+ .|++++..+ ..+++.+||+||+||+++.. .+
T Consensus 65 ~~~~i~~i~~R~~~l~R~---~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~ 140 (307)
T 1t9h_A 65 KEGYLMEIKERTNELIRP---PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQ 140 (307)
T ss_dssp SCEEEEEECCCSCEETTT---TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHH
T ss_pred CceEEEEEcchhhhhhHH---HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHH
Confidence 357788888888888886 6999999999999999998776 789998643 46899999999999998754 68
Q ss_pred HHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHH
Q psy9995 222 YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNRE 301 (595)
Q Consensus 222 ~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 301 (595)
.|.++|...|++++++||.++.+. +
T Consensus 141 ~~~~~y~~~g~~v~~~sa~~~~g~-------------------------------------------------------~ 165 (307)
T 1t9h_A 141 AYAEDYRNIGYDVYLTSSKDQDSL-------------------------------------------------------A 165 (307)
T ss_dssp HHHHHHHHHTCCEEECCHHHHTTC-------------------------------------------------------T
T ss_pred HHHHHHHhCCCeEEEEecCCCCCH-------------------------------------------------------H
Confidence 899999888999999999776541 1
Q ss_pred HHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCC-------CCceeeEEEEcCCceEEEeC
Q psy9995 302 ELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP-------GKTKHFQTLFVDDELLLCDC 374 (595)
Q Consensus 302 eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP-------G~TKh~Qti~~~~~~~liDt 374 (595)
+|.++ .++ -.++++|.||||||||||+|++.....++..+ ++|++.+.+..+ ..+++||
T Consensus 166 ~L~~~----~~G---------~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dt 231 (307)
T 1t9h_A 166 DIIPH----FQD---------KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADT 231 (307)
T ss_dssp TTGGG----GTT---------SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEESS
T ss_pred HHHhh----cCC---------CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcC-CEEEecC
Confidence 12111 122 36899999999999999999998777776665 577777776665 5789999
Q ss_pred CCCccCC
Q psy9995 375 PGLVMPS 381 (595)
Q Consensus 375 PGl~~p~ 381 (595)
||+....
T Consensus 232 pg~~~~~ 238 (307)
T 1t9h_A 232 PGFSSLE 238 (307)
T ss_dssp CSCSSCC
T ss_pred CCccccc
Confidence 9997544
No 9
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.74 E-value=3.9e-19 Score=188.25 Aligned_cols=161 Identities=24% Similarity=0.234 Sum_probs=118.8
Q ss_pred CcccChhhhhHHHHH-----HHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHH---
Q psy9995 149 GLVITPYEKNLDFWR-----QLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQ--- 219 (595)
Q Consensus 149 Gi~~t~~ern~e~~r-----ql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~--- 219 (595)
|++....+|...++| +++.+++++|+|++ |||++|....+ .|++|+... ..+++.|||+||+||++++.
T Consensus 103 ~~I~~i~~R~~~l~R~~~~~~~~~i~anvD~v~i-v~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~ 180 (358)
T 2rcn_A 103 GIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVI-VSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDF 180 (358)
T ss_dssp EEEEEECCCSCEEEEC-----CEEEEECCCEEEE-EEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHH
T ss_pred ceEeEEeCCcCcccCcchhhHHHHHHhcCCEEEE-EEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHH
Confidence 667777777666655 55557899999995 58889986555 788887432 34788999999999998765
Q ss_pred HHHHHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccC
Q psy9995 220 RCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLN 299 (595)
Q Consensus 220 ~~~w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 299 (595)
...|..+|...|++++++||.++.+
T Consensus 181 ~~~~~~~y~~~G~~v~~~Sa~~~~g------------------------------------------------------- 205 (358)
T 2rcn_A 181 VNEQMDIYRNIGYRVLMVSSHTQDG------------------------------------------------------- 205 (358)
T ss_dssp HHHHHHHHHTTTCCEEECBTTTTBT-------------------------------------------------------
T ss_pred HHHHHHHHHhCCCcEEEEecCCCcC-------------------------------------------------------
Confidence 6789999999999999999987654
Q ss_pred HHHHHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcce-eEecCCC---C----CceeeEEEEcCCceEE
Q psy9995 300 REELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKK-VSVSATP---G----KTKHFQTLFVDDELLL 371 (595)
Q Consensus 300 ~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tP---G----~TKh~Qti~~~~~~~l 371 (595)
.++|...+ ++ -.++|+|.||||||||||+|++... ..++... | +|++.+...+..+..+
T Consensus 206 l~~L~~~~----~G---------~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 206 LKPLEEAL----TG---------RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDV 272 (358)
T ss_dssp HHHHHHHH----TT---------SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEE
T ss_pred HHHHHHhc----CC---------CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEe
Confidence 23343322 22 3589999999999999999999776 5555443 5 5666777778777789
Q ss_pred EeCCCCcc
Q psy9995 372 CDCPGLVM 379 (595)
Q Consensus 372 iDtPGl~~ 379 (595)
+||||+..
T Consensus 273 ~dtpgv~e 280 (358)
T 2rcn_A 273 IDSPGVRE 280 (358)
T ss_dssp EECHHHHT
T ss_pred cCcccHHH
Confidence 99999874
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.72 E-value=6.4e-18 Score=175.10 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=119.8
Q ss_pred CCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHH---HHH
Q psy9995 147 EDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQ---RCY 222 (595)
Q Consensus 147 T~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~---~~~ 222 (595)
+.|++....++...+.|. .+.++|++|+|+|+++|..+. ..+++|+..+ ..++|+|||+||+||+++.+ ...
T Consensus 58 ~~g~I~~i~er~~~l~r~---~~~naD~vliV~d~~~p~~s~-~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~ 133 (302)
T 2yv5_A 58 NTFAIEEVEERKNLLIRP---KVANVDRVIIVETLKMPEFNN-YLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELER 133 (302)
T ss_dssp TEEEEEEECCCSCEEETT---EEESCCEEEEEECSTTTTCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHH
T ss_pred CeEEEEeeCChHHHHhHH---HHHhcCEEEEEEECCCCCCCH-HHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHH
Confidence 567777666665544453 689999999999999986432 3566776543 35789999999999998752 677
Q ss_pred HHHHHhhCCCeEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHH
Q psy9995 223 WTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREE 302 (595)
Q Consensus 223 w~~~~~~~gi~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~e 302 (595)
|.++++..|++++++||+++.+ .++
T Consensus 134 ~~~~~~~~g~~~~~~SA~~g~g-------------------------------------------------------i~~ 158 (302)
T 2yv5_A 134 WISIYRDAGYDVLKVSAKTGEG-------------------------------------------------------IDE 158 (302)
T ss_dssp HHHHHHHTTCEEEECCTTTCTT-------------------------------------------------------HHH
T ss_pred HHHHHHHCCCeEEEEECCCCCC-------------------------------------------------------HHH
Confidence 8888888899999999988765 455
Q ss_pred HHHHhhhhcccCCCCCCCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCC-------CceeeEEEEcCCceEEEeCC
Q psy9995 303 LISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG-------KTKHFQTLFVDDELLLCDCP 375 (595)
Q Consensus 303 L~e~~~~~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG-------~TKh~Qti~~~~~~~liDtP 375 (595)
|.+.+. + ..++++|.+|||||||||+|+ .....++.... +|++.+.+......+++|||
T Consensus 159 L~~~l~----G---------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p 224 (302)
T 2yv5_A 159 LVDYLE----G---------FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP 224 (302)
T ss_dssp HHHHTT----T---------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred HHhhcc----C---------cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence 655432 2 357999999999999999999 76666666654 56666666665567899999
Q ss_pred CCcc
Q psy9995 376 GLVM 379 (595)
Q Consensus 376 Gl~~ 379 (595)
|+..
T Consensus 225 g~~~ 228 (302)
T 2yv5_A 225 GFSK 228 (302)
T ss_dssp CCSS
T ss_pred CcCc
Confidence 9863
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.61 E-value=1.7e-15 Score=156.67 Aligned_cols=144 Identities=22% Similarity=0.244 Sum_probs=104.4
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHH---HHHHHHHHhhCCCeEEEEecccCC
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQ---RCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~---~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
.+.++|++|+|+|+++|.++. ..+.+|+..+ ..+.|+|||+||+||.+..+ ...|.+.+... ..++.+||+++.
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~ 158 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGM 158 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCc
Confidence 578999999999999987432 3566666543 24789999999999987654 56777776544 788999998876
Q ss_pred CCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCCCce
Q psy9995 244 DDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVM 323 (595)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~~~i 323 (595)
+ .++|.+.+. + -
T Consensus 159 g-------------------------------------------------------v~~lf~~l~----g---------e 170 (301)
T 1u0l_A 159 G-------------------------------------------------------IEELKEYLK----G---------K 170 (301)
T ss_dssp T-------------------------------------------------------HHHHHHHHS----S---------S
T ss_pred C-------------------------------------------------------HHHHHHHhc----C---------C
Confidence 5 455554432 1 2
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCC-------CceeeEEEEcCCceEEEeCCCCccCC
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPG-------KTKHFQTLFVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG-------~TKh~Qti~~~~~~~liDtPGl~~p~ 381 (595)
.++++|.+|||||||||+|++.....++..+. +|++.+.+.+....+++|+||+..+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLE 235 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccC
Confidence 57999999999999999999977666555443 56666666665567899999987554
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.30 E-value=2.4e-14 Score=151.19 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=104.4
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhC--CCeEEEEecccCCCCCCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSV--NVAVAFFSATNIYDDIPEG 249 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~--gi~vi~~SA~~~~~~~~~~ 249 (595)
+|.+..|+|++.|+...++.+++++..+...++.++++||+|++++.....|.+|++.. +......++.....
T Consensus 58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 132 (357)
T 2e87_A 58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQF----- 132 (357)
T ss_dssp HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-----
Confidence 46666778888888888888888875444567888999999999999999999998651 22111111000000
Q ss_pred ccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcccCCCCCCCCceEEEEee
Q psy9995 250 DEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVG 329 (595)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~~~~~~~~~~~i~i~lvG 329 (595)
.. ....+.+ .... . ...+.......... ........+|++||
T Consensus 133 ------------~~----~l~~~~~---------------~~~~--~---l~~l~~~~~~~~~~--~~~~~~~~~v~lvG 174 (357)
T 2e87_A 133 ------------YG----RVASVLR---------------DIDD--R---LRYLNKAREVLKDL--PVVDLEIPTVVIAG 174 (357)
T ss_dssp ------------HH----HHHHHHH---------------HTHH--H---HHHHHHHHHHGGGS--CCCCSSSCEEEEEC
T ss_pred ------------HH----HHHHHHH---------------HHHH--H---HHHHHHHHHHHhcC--CccCCCCCEEEEEC
Confidence 00 0000000 0000 0 00111111111111 12224568999999
Q ss_pred cCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccCC
Q psy9995 330 YPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMPS 381 (595)
Q Consensus 330 ~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p~ 381 (595)
+||||||||||+|++.. +.++..|++|++.++..+ +..+.++||||+....
T Consensus 175 ~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 175 HPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp STTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 99999999999999877 778899999999887654 2458999999997544
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.19 E-value=1.6e-11 Score=126.99 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=99.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+.|-.+||+||||+.|.|.+...+ ....|.+..+.|+||||+.......+..+....+..+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 45677889999999999999976542 1234667788899999988654444555677788899999
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH-HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ-RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.+++...+..+.+.++....+.|+|+|+||+|+.+... ...+.+.+ ....+++++||+++.+
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~g 159 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQ 159 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHH
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCC
Confidence 99999999998876544444444543223689999999999987655 44444443 1234788999987654
No 14
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.19 E-value=1.4e-11 Score=127.56 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=103.5
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH--------------Hhhhhc-CeeeEEEeCCCcccCh--hhhhHHHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWR-RELNLLQEEDGLVITP--YEKNLDFWRQLWR 167 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wr-g~~~~L~DT~Gi~~t~--~ern~e~~rql~~ 167 (595)
..+.+.|-.+||+||||+.|.|.+..-+ ....+. +..+.|+||||+.... ...+..+....+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 3456788899999999999999976432 223455 7788999999987644 4555667778888
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHH-HHHHHHhCCCCcEEEEEeCCCCC-CHHHHHHHHHHHhhC-C--CeEEEEecccC
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDL-ERYVKEVSPHKRNMILLNKADLL-TRKQRCYWTKYFNSV-N--VAVAFFSATNI 242 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~L-e~~lk~v~~~K~~ILVlNK~DLl-~~~~~~~w~~~~~~~-g--i~vi~~SA~~~ 242 (595)
.+..+|+||+|+|+.++.+..+..+ ...++ ..+.|+|+|+||+|+. +......+.+.+.+. + .+++.+||+++
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~--~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g 166 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIK--PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKG 166 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTG--GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTT
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHH--hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCC
Confidence 9999999999999998876555444 34443 2468999999999998 665555555554433 3 67899999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 167 ~g 168 (308)
T 3iev_A 167 AN 168 (308)
T ss_dssp BS
T ss_pred CC
Confidence 76
No 15
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.12 E-value=2.9e-11 Score=132.94 Aligned_cols=133 Identities=19% Similarity=0.175 Sum_probs=98.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcc-cChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLV-ITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~-~t~~ern~e~~rql~~vie~ 171 (595)
-.+.|-.+||+||||+.|.|...++. ....+.+..+.|+||+|+. .+....+....+..+..++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 46889999999999999999998754 2345678899999999987 65433333335666778999
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+||+|+|+.++.++.+..+.+++ .++|+|+|+||+|+.+......+.+++ ..+.+++++||+++.+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 9999999999988765444443333 378999999999997542223333333 2346789999998876
No 16
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.99 E-value=2e-10 Score=126.04 Aligned_cols=135 Identities=18% Similarity=0.111 Sum_probs=82.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+.|-..||+||||+.|.|.+.++. ....+.+..+.|+||||+..........+++..+..+..+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 313 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA 313 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccC
Confidence 45789999999999999999988754 2245678889999999987654444444456667778899
Q ss_pred CeEEEEEeCCCCCCCCch-HHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhC-CCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCE-DLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSV-NVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~-~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~-gi~vi~~SA~~~~~ 244 (595)
|+||+|+|+.++.++... ....++..+. ++|+|+|+||+|+.+...... +.+.+. ..+++.+||+++.+
T Consensus 314 D~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 314 DLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp SEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBS
T ss_pred CEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCC
Confidence 999999999998765221 2334444444 789999999999987654322 222222 35789999998866
No 17
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.98 E-value=3.3e-10 Score=109.71 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=90.8
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH---------------Hhh-hhcCeeeEEEeCCCcccChhhhh-----HHHHHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD---------------EFL-QWRRELNLLQEEDGLVITPYEKN-----LDFWRQ 164 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~-~wrg~~~~L~DT~Gi~~t~~ern-----~e~~rq 164 (595)
...+-|-..++.||||+.|.|...++. ... .|.+..+.|+||||+..+..... ..+++.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 345666677888888888888876521 111 25567889999999765422111 223333
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHH----HHHHHhh-------CCCe
Q psy9995 165 LWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY----WTKYFNS-------VNVA 233 (595)
Q Consensus 165 l~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~----w~~~~~~-------~gi~ 233 (595)
..+....+|+||+|+|+++++......+..++. ..+.|+|+|+||+|+.+..+... +.+.+.. .+.+
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFA--PTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLT 186 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHG--GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCe
Confidence 333344589999999999887655555555555 34689999999999998765433 2333333 3557
Q ss_pred EEEEecccCCC
Q psy9995 234 VAFFSATNIYD 244 (595)
Q Consensus 234 vi~~SA~~~~~ 244 (595)
++++||+++.+
T Consensus 187 ~~~~SA~~g~g 197 (223)
T 4dhe_A 187 VQLFSALKRTG 197 (223)
T ss_dssp EEEEBTTTTBS
T ss_pred EEEeecCCCcC
Confidence 89999998765
No 18
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=1.3e-10 Score=109.46 Aligned_cols=128 Identities=14% Similarity=0.070 Sum_probs=83.7
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------H--hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------E--FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~--f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.||+++.+.|...+-. . .....+..+.|.||+|... +.. .....+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~------~~~~~~~~ 87 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER--FRT------LTPSYYRG 87 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG--GCC------SHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh--hhh------hhHHHhcc
Confidence 35667788999999999999865421 0 1122345577889999532 111 12245789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhC-----CCCcEEEEEeCCCCCCHHH-HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVS-----PHKRNMILLNKADLLTRKQ-RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~-----~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++. .+..++..+. .+.|++||+||+|+..... ......+....++.++.+||+++.+
T Consensus 88 ~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDG 164 (195)
T ss_dssp CCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred CCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 99999999998875432 3444544442 3678999999999954321 2223344455678899999988765
No 19
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.95 E-value=1.2e-10 Score=127.43 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=84.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+.|-..||+||||+.|.|.+.+++ ....+.+..+.|+||+|+..+....+....+..+..+..+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 304 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA 304 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcC
Confidence 35778899999999999999998753 2346788999999999987654444444456677778899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|+||+|+|+.+|.......+.+.+. .+|+|+|+||+|+.+........+ + ..+.+++.+||+++.|
T Consensus 305 D~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~Dl~~~~~~~~~~~-~-~~~~~~i~iSAktg~G 370 (462)
T 3geh_A 305 DLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKIDLVEKQLITSLEY-P-ENITQIVHTAAAQKQG 370 (462)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTTSSCGGGSTTCCC-C-TTCCCEEEEBTTTTBS
T ss_pred CEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCCCCcchhhHHHHH-h-ccCCcEEEEECCCCCC
Confidence 9999999999987654444444432 479999999999987654321000 1 0245789999998766
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.93 E-value=2.6e-09 Score=120.28 Aligned_cols=172 Identities=13% Similarity=0.058 Sum_probs=104.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHH-------------------HHH---------Hhhhhc-----CeeeEEEeCCCcccChh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAM-------------------ERD---------EFLQWR-----RELNLLQEEDGLVITPY 155 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~-------------------Er~---------~f~~wr-----g~~~~L~DT~Gi~~t~~ 155 (595)
+.|-..++.||||+.+.|... |++ ..+.|. ...+.|+||||...
T Consensus 7 I~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d--- 83 (599)
T 3cb4_D 7 FSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD--- 83 (599)
T ss_dssp EEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG---
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH---
Confidence 344556777888888887652 111 123454 36778999999642
Q ss_pred hhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH---HHHHHHHHHHhhCCC
Q psy9995 156 EKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR---KQRCYWTKYFNSVNV 232 (595)
Q Consensus 156 ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~---~~~~~w~~~~~~~gi 232 (595)
+.....+.+..+|.+|+|+|+.++....... .+......+.|+|+|+||+|+... +....|.+.+.-...
T Consensus 84 -----F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~--~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 84 -----FSYEVSRSLAACEGALLVVDAGQGVEAQTLA--NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDAT 156 (599)
T ss_dssp -----GHHHHHHHHHHCSEEEEEEETTTCCCTHHHH--HHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCT
T ss_pred -----HHHHHHHHHHHCCEEEEEEECCCCCCHHHHH--HHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcc
Confidence 2334556788999999999999877643332 222222457899999999999752 233455555421122
Q ss_pred eEEEEecccCCCCCCCCccchhhhhhhccccccchhhhhhhhhhhccccchhhhhhccccCCccccCHHHHHHHhhhhcc
Q psy9995 233 AVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHD 312 (595)
Q Consensus 233 ~vi~~SA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~eL~e~~~~~~~ 312 (595)
+++++||+++.+ .++|++.+....+
T Consensus 157 ~vi~vSAktg~G-------------------------------------------------------I~~Ll~~I~~~lp 181 (599)
T 3cb4_D 157 DAVRCSAKTGVG-------------------------------------------------------VQDVLERLVRDIP 181 (599)
T ss_dssp TCEEECTTTCTT-------------------------------------------------------HHHHHHHHHHHSC
T ss_pred eEEEeecccCCC-------------------------------------------------------chhHHHHHhhcCC
Confidence 489999988765 3455555544333
Q ss_pred cCCCCCCCCceEEEEeec---CCCCcchHhhhhcCcc
Q psy9995 313 VNIPRMNPDVMTIGLVGY---PNVGKSSTINALLNAK 346 (595)
Q Consensus 313 ~~~~~~~~~~i~i~lvG~---pnvGKSSliN~L~~~~ 346 (595)
.. ......++...++.. |++|+.++++.+.|.-
T Consensus 182 ~p-~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 182 PP-EGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp CC-CCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred Cc-cccccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 20 111234555555555 8999999999888753
No 21
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.93 E-value=3.6e-10 Score=116.60 Aligned_cols=135 Identities=14% Similarity=0.128 Sum_probs=94.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh-hhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY-EKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e~~rql~~vie~ 171 (595)
..+.|-.+||.||||+.|.|.+...+ ....|.+..+.++||||+...+. ..+..+.+..+..++.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 45778899999999999999976432 12345667788999999862222 2222344445677889
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC-HHHHHHHHHHHhh-CCC-eEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT-RKQRCYWTKYFNS-VNV-AVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~-~~~~~~w~~~~~~-~gi-~vi~~SA~~~~~ 244 (595)
+|++++|+|+.+ +......+.+.+. ..++|.|+|+||+|+.. ......+.+.+.+ .+. .++++||+++.+
T Consensus 89 ~D~vl~Vvd~~~-~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 89 VELVIFVVEGTR-WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp EEEEEEEEETTC-CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred CCEEEEEEeCCC-CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 999999999987 5433444444444 45789999999999987 5555455554543 454 688999988765
No 22
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.91 E-value=2.6e-10 Score=106.95 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=89.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+-|-.+|+.||||+++.|.+.+.. ....+.+..+.+.||+|+............+..+..+..+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~a 84 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 84 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhC
Confidence 34567789999999999999875421 2334667778899999986532222222345567778999
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++....+...+... ..+.|+|+|+||+||..... .+....+..++.+||+++.+
T Consensus 85 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 85 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCC
Confidence 999999999988876544333333322 23689999999999853210 11112355788899988765
No 23
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.89 E-value=4.4e-10 Score=119.73 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=51.2
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCccC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVMP 380 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~p 380 (595)
.+..+|||||+||||||||+|+|++.+ +.|++.||+|++... +.+ +..++++||||++..
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 455789999999999999999999875 889999999999654 333 668999999999854
No 24
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.88 E-value=1.7e-09 Score=101.52 Aligned_cols=137 Identities=12% Similarity=0.021 Sum_probs=90.9
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHHH-----------hhhhcCeeeEEEeCCCcccChh-----hhhHHHHHHHHHHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERDE-----------FLQWRRELNLLQEEDGLVITPY-----EKNLDFWRQLWRVI 169 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~~-----------f~~wrg~~~~L~DT~Gi~~t~~-----ern~e~~rql~~vi 169 (595)
...+-|-..++.||||+.+.|...+... ...+.+..+.++||||+..... +.-..+++...+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNR 102 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcC
Confidence 3456777889999999999998765221 0111234567999999765432 11223333444444
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHH----HHHHhhC-CCeEEEEecccCCC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYW----TKYFNSV-NVAVAFFSATNIYD 244 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w----~~~~~~~-gi~vi~~SA~~~~~ 244 (595)
..+|+|++|+|+..+.......+..++.. .+.|+++|+||+|+.+...+... .+++... +.+++.+||+++.+
T Consensus 103 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (195)
T 3pqc_A 103 WSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEG 180 (195)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTT
T ss_pred cCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence 55699999999988776555566667764 36899999999999876544333 3334332 36889999988765
No 25
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.85 E-value=4.4e-09 Score=99.24 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=88.8
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHH-HH------------HhhhhcCeeeEEEeCCCcccChh-----hhhHHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAME-RD------------EFLQWRRELNLLQEEDGLVITPY-----EKNLDFWRQLW 166 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~E-r~------------~f~~wrg~~~~L~DT~Gi~~t~~-----ern~e~~rql~ 166 (595)
....+-|-..|+.||||+.+.|...+ .. .+..+ +..+.++||||+..... +.-..++....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 34567778889999999999998654 11 11112 23578999999765321 11112223322
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH----HHHHHHhh-CCCeEEEEeccc
Q psy9995 167 RVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC----YWTKYFNS-VNVAVAFFSATN 241 (595)
Q Consensus 167 ~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~----~w~~~~~~-~gi~vi~~SA~~ 241 (595)
+....+|++++|+|+.++.++....+.+++.. .+.|+++|+||+|+.+..... .+.+.+.. .+..++.+||++
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET 178 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccC
Confidence 22334499999999998877665556666653 578999999999998865433 33333432 256889999988
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 179 ~~g 181 (195)
T 1svi_A 179 KKG 181 (195)
T ss_dssp CTT
T ss_pred CCC
Confidence 765
No 26
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.85 E-value=1.1e-09 Score=119.22 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=95.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh--h-hhHHHHHHHHHHHh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY--E-KNLDFWRQLWRVIE 170 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~--e-rn~e~~rql~~vie 170 (595)
.+.|-.+|+.|||++.|.|...++. ....+.+..+.|+||||+..... + .+..........++
T Consensus 197 ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~ 276 (456)
T 4dcu_A 197 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAID 276 (456)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHH
T ss_pred eeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHh
Confidence 4566789999999999999977643 23457788899999999865321 1 11111223345789
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhC-----CCeEEEEecccCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK--QRCYWTKYFNSV-----NVAVAFFSATNIY 243 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~-----gi~vi~~SA~~~~ 243 (595)
.+|++|+|+|+..++...+..+..++.+ .++|+|||+||+|+.+.. ..+...+++.+. +.+++++||+++.
T Consensus 277 ~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 354 (456)
T 4dcu_A 277 RSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 354 (456)
T ss_dssp HCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred hCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence 9999999999999887666666666653 579999999999998532 223333333222 4689999999987
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 355 g 355 (456)
T 4dcu_A 355 R 355 (456)
T ss_dssp T
T ss_pred C
Confidence 6
No 27
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.85 E-value=7e-10 Score=120.12 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=95.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh-hhhHHHHH--HHHHHHh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY-EKNLDFWR--QLWRVIE 170 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e~~r--ql~~vie 170 (595)
.+.|-.+||+||||+.|.|.+.++. ....|.+..+.|+||||+..... ....+.+. .....++
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~ 256 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAID 256 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHH
Confidence 5678899999999999999987753 13456788899999999854321 00111122 2335788
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH--HHHHH----HHHhh-CCCeEEEEecccCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ--RCYWT----KYFNS-VNVAVAFFSATNIY 243 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~--~~~w~----~~~~~-~gi~vi~~SA~~~~ 243 (595)
.+|++|+|+|+.++.++.+..+..++. ..++++|+|+||+|+.+..+ ...+. +.+.. .+.+++++||+++.
T Consensus 257 ~ad~~llv~D~~~~~s~~~~~~~~~~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~ 334 (436)
T 2hjg_A 257 RSEVVAVVLDGEEGIIEQDKRIAGYAH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 334 (436)
T ss_dssp HCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred hCCEEEEEEcCCcCCcHHHHHHHHHHH--HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCC
Confidence 999999999999988766655555554 35799999999999986422 22222 22322 25689999999987
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 335 ~ 335 (436)
T 2hjg_A 335 R 335 (436)
T ss_dssp T
T ss_pred C
Confidence 6
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.83 E-value=8.8e-10 Score=119.44 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=92.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChh-h-hhHHH--HHHHHHHH
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPY-E-KNLDF--WRQLWRVI 169 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~-e-rn~e~--~rql~~vi 169 (595)
.+.|-.+||.||||+.|.|.+.++. ....|.|..+.++||+|+..... . ...+. .......+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 5668899999999999999987652 23567888889999999743110 0 00000 12234678
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH--HHHHHHH----Hhh-CCCeEEEEecccC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ--RCYWTKY----FNS-VNVAVAFFSATNI 242 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~--~~~w~~~----~~~-~gi~vi~~SA~~~ 242 (595)
+.+|++++|+|+..+.+..+..+..++. ..++++++|+||+|+..... ...+.+. +.. .+.+++++||+++
T Consensus 262 ~~ad~vllv~d~~~~~~~~~~~i~~~l~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 339 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQDQRMAGLME--RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKG 339 (439)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTT
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCC
Confidence 8999999999999887665555555555 35789999999999986432 2333322 222 2468899999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 340 ~g 341 (439)
T 1mky_A 340 WN 341 (439)
T ss_dssp BS
T ss_pred CC
Confidence 66
No 29
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.82 E-value=7.9e-09 Score=101.07 Aligned_cols=139 Identities=13% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChh-hhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPY-EKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~-ern~e~~rql~~vie~ 171 (595)
...+.|-..|+.|||++.+.|...+-. ....+.+..+.|+||||...... ++.......+......
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 345677788999999999998764321 11123456788999999865332 2322222333345678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhC---CCCcEEEEEeCCCCCCHHHH-----HHHHHHHhhCC--CeEEEEeccc
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVS---PHKRNMILLNKADLLTRKQR-----CYWTKYFNSVN--VAVAFFSATN 241 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~---~~K~~ILVlNK~DLl~~~~~-----~~w~~~~~~~g--i~vi~~SA~~ 241 (595)
+|++|+|+|+.++.++.......++..+. .+.|+|+|+||+|+.+..+. .....+....+ ..++.+||++
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 188 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLT 188 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTT
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 89999999999987765333333443332 37899999999999764321 22333344445 6889999998
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 189 g~g 191 (228)
T 2qu8_A 189 GVG 191 (228)
T ss_dssp CTT
T ss_pred CCC
Confidence 876
No 30
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.79 E-value=1.4e-09 Score=115.31 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=37.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC-CceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD-DELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~-~~~~liDtPGl~~ 379 (595)
...|++||+||||||||+|+|++.. +.++..||+|+++. .+.++ ..+.++||||++.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR 238 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchh
Confidence 3349999999999999999999876 57889999998864 45553 5688999999864
No 31
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.78 E-value=6.9e-09 Score=109.31 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=92.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHH-hhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVI-ERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vi-e~sD 173 (595)
.+-|-..|++||||+.|.|.+.... ....+.+..+.++||+|+...+......+.++....+ ..+|
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad 248 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGN 248 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCC
Confidence 4567788999999999999875421 1111234557899999987654332222233333333 3699
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+|+|+.++..........++..+ ..++|+|+|+||+|+..........+++...+.+++++||+++.|
T Consensus 249 ~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 249 LIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp EEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred EEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 99999999876533223333333332 237999999999999987766556666666678899999998876
No 32
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.77 E-value=3.2e-09 Score=96.51 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=88.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|+.|||++.+.|...... ....+.+..+.+.||+|..... .....+.......+..+|+
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD-KWEKKIQEKVDRALEDAEV 82 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSS-SCCHHHHHHHHHHTTTCSE
T ss_pred EEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCcc-chHHHHHHHHHHHHHhCCE
Confidence 345567899999999998764311 1233456778899999975422 1223334445567889999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-eEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV-AVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi-~vi~~SA~~~~~ 244 (595)
+|+|+|+.+++......+..++.. .+.|+++|+||+|+.+... ...+ +.+.+. .++.+||+++.+
T Consensus 83 ~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--~~~~-~~~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 83 VLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL--YLGP-LYGLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG--GCGG-GGGGSSCSCEECBTTTTBS
T ss_pred EEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH--hHHH-HHhCCCCCeEEEecccCCC
Confidence 999999998876555556666653 4689999999999976521 1122 224566 788999988765
No 33
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.77 E-value=5.4e-09 Score=98.58 Aligned_cols=61 Identities=41% Similarity=0.621 Sum_probs=43.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcCCceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~ 381 (595)
..++|+++|.+|||||||+|+|++.. ...++++||+|.+...+.++..+.++||||+..+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 46899999999999999999999876 56788999999999888888899999999976443
No 34
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.76 E-value=5.7e-08 Score=105.42 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=84.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHH-----------------------------------HHH---------HhhhhcCeeeE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAM-----------------------------------ERD---------EFLQWRRELNL 143 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~-----------------------------------Er~---------~f~~wrg~~~~ 143 (595)
.+.|-.+|+.||||+.+.|+.. ||+ ...+|.+..+.
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~ 98 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFT 98 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEE
Confidence 4567778889999998888443 222 12456677889
Q ss_pred EEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------CchHHHHHHHHhCCCCc-EEEEEeCCCCC
Q psy9995 144 LQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLF-------RCEDLERYVKEVSPHKR-NMILLNKADLL 215 (595)
Q Consensus 144 L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~-------~~~~Le~~lk~v~~~K~-~ILVlNK~DLl 215 (595)
|+||||.. .+.+.+...+..+|++|+|+||+++... ........+. ..+.| +|+|+||+|+.
T Consensus 99 iiDTPGh~--------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~--~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 99 ILDAPGHK--------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK--TAGVKHLIVLINKMDDP 168 (439)
T ss_pred EEECCChH--------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH--HcCCCeEEEEeecCCCc
Confidence 99999952 3456666778899999999999987531 1222222232 23455 89999999996
Q ss_pred CH----HH----HHHHHHHHhhCC------CeEEEEecccCCCC
Q psy9995 216 TR----KQ----RCYWTKYFNSVN------VAVAFFSATNIYDD 245 (595)
Q Consensus 216 ~~----~~----~~~w~~~~~~~g------i~vi~~SA~~~~~~ 245 (595)
+. .. .....+++...| ++++++||+++.+.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni 212 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANL 212 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccc
Confidence 42 11 123334444444 36899999998773
No 35
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.72 E-value=1.1e-08 Score=96.01 Aligned_cols=60 Identities=40% Similarity=0.538 Sum_probs=54.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p 380 (595)
...+|+++|.+|||||||+|+|++.....+++++|+|++......+..+.++||||+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYA 81 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccc
Confidence 457999999999999999999999887788999999999988888889999999997643
No 36
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.72 E-value=1.2e-09 Score=110.17 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=85.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHH-------------HHhhhhcCeeeEEEeCCCcccC-hh----hhhHHHHHHHHHHHh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMER-------------DEFLQWRRELNLLQEEDGLVIT-PY----EKNLDFWRQLWRVIE 170 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er-------------~~f~~wrg~~~~L~DT~Gi~~t-~~----ern~e~~rql~~vie 170 (595)
+.+-..||.||||++|.|.+..- .....+.+..+.|+||||+... ++ .....+++.. ....
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~-~~~~ 82 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS-VIDL 82 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH-HHHS
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH-HhhC
Confidence 44567899999999999987631 1344567788899999997542 22 2222233332 2237
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+||+|+|+.++. ++..+..++. ..+.|+|+|+||+|+..... ...+.+ ..|++++++||+++.|
T Consensus 83 ~~d~vi~VvDas~~~--~~~~l~~~l~--~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~vi~~SA~~g~g 153 (256)
T 3iby_A 83 EYDCIINVIDACHLE--RHLYLTSQLF--ELGKPVVVALNMMDIAEHRGISIDTEKLES---LLGCSVIPIQAHKNIG 153 (256)
T ss_dssp CCSEEEEEEEGGGHH--HHHHHHHHHT--TSCSCEEEEEECHHHHHHTTCEECHHHHHH---HHCSCEEECBGGGTBS
T ss_pred CCCEEEEEeeCCCch--hHHHHHHHHH--HcCCCEEEEEEChhcCCcCCcHHHHHHHHH---HcCCCEEEEECCCCCC
Confidence 899999999998732 2333444443 45789999999999865432 223333 3378999999998765
No 37
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.70 E-value=7.6e-09 Score=103.46 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=43.5
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCC-CCceeeEEEEc---CCceEEEeCCCCccC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP-GKTKHFQTLFV---DDELLLCDCPGLVMP 380 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP-G~TKh~Qti~~---~~~~~liDtPGl~~p 380 (595)
...++|++||.||||||||+|+|++.....++..+ |+|++.+.... +..+.++||||+..+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 34699999999999999999999998866655444 78988765432 457899999999643
No 38
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=1.6e-08 Score=95.19 Aligned_cols=131 Identities=12% Similarity=0.058 Sum_probs=85.4
Q ss_pred hcCCcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 104 EKRELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 104 ~~~~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
...-.+.|-..|+.|||++.+.|...+.. ....+.+..+.+.||+|...- . .++ ...+..+|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~--~---~~~---~~~~~~~d 85 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESL--R---SSW---NTYYTNTE 85 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC------C---GGG---HHHHTTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhH--H---HHH---HHHhcCCC
Confidence 34556777888999999999998854321 123456778899999996321 1 112 23578999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHH-----hhCCCeEEEEecccCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYF-----NSVNVAVAFFSATNIY 243 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~-----~~~gi~vi~~SA~~~~ 243 (595)
++|+|+|+.++.++. .+..++..+ ..+.|+++|+||+|+........+.+++ ...++.++.+||+++.
T Consensus 86 ~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 86 FVIVVVDSTDRERIS--VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EEEEEEETTCTTTHH--HHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEeCCCHHHHH--HHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 999999999886432 233343333 1468999999999997642233333333 2335678899998876
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 164 g 164 (187)
T 1zj6_A 164 G 164 (187)
T ss_dssp T
T ss_pred C
Confidence 5
No 39
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.69 E-value=1.7e-08 Score=95.39 Aligned_cols=128 Identities=15% Similarity=0.033 Sum_probs=84.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
-.+-|-..|+.|||++.+.|...+-. ....+.+..+.|.||+|... +.......+..+|++
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR--------FRSMWERYCRGVSAI 94 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHH--------HHTTHHHHHTTCSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHh--------HHHHHHHHHccCCEE
Confidence 34667778899999999998764422 11345577788999999531 112223457899999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
|+|+|+.++.++. .+..++..+ . .+.|+|||+||+|+........+.+.+. ..++.++.+||+++.+
T Consensus 95 i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 95 VYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence 9999998875432 233333332 1 4689999999999976433334444432 2245788899988765
No 40
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.69 E-value=7.2e-09 Score=100.17 Aligned_cols=61 Identities=36% Similarity=0.448 Sum_probs=52.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcC----CceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVD----DELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~----~~~~liDtPGl~~p~ 381 (595)
..++|+++|.+|||||||+|+|++.. ...++.+||+|++.....+. ..+.|+||||+..+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCccc
Confidence 45899999999999999999999987 45789999999998877665 689999999986553
No 41
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.69 E-value=8.9e-09 Score=106.31 Aligned_cols=59 Identities=34% Similarity=0.518 Sum_probs=49.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEE---cCCceEEEeCCCCccCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLF---VDDELLLCDCPGLVMPS 381 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~---~~~~~~liDtPGl~~p~ 381 (595)
..|++||.||||||||+|+|++.+...++..|++|++..... -+..+.++||||+..+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh
Confidence 469999999999999999999988777899999999854321 24578999999998653
No 42
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.69 E-value=1.6e-08 Score=95.55 Aligned_cols=130 Identities=11% Similarity=0.082 Sum_probs=86.1
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHHH------------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERDE------------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~~------------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
....+-|-..|+.|||++.+.|...+-.. ...+.+..+.|.||+|...-. .++ ...+..+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----~~~---~~~~~~~ 87 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFR-----GLW---ETYYDNI 87 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGG-----GGG---GGGCTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHH-----HHH---HHHHhcC
Confidence 44567788899999999999988654332 134667788999999964211 111 1346789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-C-----------CCCcEEEEEeCCCCCCHHHHHHHHHHH------hhCCCeE
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-S-----------PHKRNMILLNKADLLTRKQRCYWTKYF------NSVNVAV 234 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-~-----------~~K~~ILVlNK~DLl~~~~~~~w~~~~------~~~gi~v 234 (595)
|++|+|+|+.++.++. .+..++..+ . .+.|+|||+||+|+........+.+.+ ...+..+
T Consensus 88 d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLC--VVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHH--HHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHH--HHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEE
Confidence 9999999999876542 233333322 1 278999999999998763333333322 3456788
Q ss_pred EEEecccCCC
Q psy9995 235 AFFSATNIYD 244 (595)
Q Consensus 235 i~~SA~~~~~ 244 (595)
+.+||+++.+
T Consensus 166 ~~~Sa~~g~g 175 (199)
T 4bas_A 166 FASNGLKGTG 175 (199)
T ss_dssp EECBTTTTBT
T ss_pred EEeeCCCccC
Confidence 9999988765
No 43
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.69 E-value=1.7e-08 Score=102.64 Aligned_cols=57 Identities=33% Similarity=0.472 Sum_probs=48.9
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec-CCceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV-DDELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~-~~~~~liDtPGl~~ 379 (595)
.++|+++|.||||||||+|+|++.. ..|+..||+|.+.... .. +..+.++||||+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~ 62 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCc
Confidence 4789999999999999999999987 7999999999886543 32 56789999999864
No 44
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.68 E-value=3.9e-08 Score=105.34 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=84.8
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH----------------------------hhhhc-----CeeeEEEeCCCcccC
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE----------------------------FLQWR-----RELNLLQEEDGLVIT 153 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~----------------------------f~~wr-----g~~~~L~DT~Gi~~t 153 (595)
-.+.+-..|+.||||+.+.|.+.+... ...|. ...+.|+||||..
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~-- 86 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE-- 86 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG--
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH--
Confidence 345567889999999999998632110 01122 1577899999942
Q ss_pred hhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-CchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHH----Hh
Q psy9995 154 PYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLF-RCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKY----FN 228 (595)
Q Consensus 154 ~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~-~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~----~~ 228 (595)
.+.+.....+..+|++|+|+|++++... ........+... ..+|+|+|+||+|+++.+....+.+. +.
T Consensus 87 ------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 87 ------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp ------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 2345566678899999999999987632 122222233322 34689999999999987655444333 32
Q ss_pred hC---CCeEEEEecccCCC
Q psy9995 229 SV---NVAVAFFSATNIYD 244 (595)
Q Consensus 229 ~~---gi~vi~~SA~~~~~ 244 (595)
.. +.+++++||+++.+
T Consensus 160 ~~~~~~~~ii~vSA~~g~g 178 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKIN 178 (403)
T ss_dssp TSTTTTCCEEECBTTTTBS
T ss_pred hhCCCCCEEEEEECCCCcC
Confidence 22 45799999988765
No 45
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.66 E-value=1.2e-08 Score=95.70 Aligned_cols=130 Identities=15% Similarity=-0.002 Sum_probs=86.2
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH--------------------------hhhhcCeeeEEEeCCCcccChhhhhHH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE--------------------------FLQWRRELNLLQEEDGLVITPYEKNLD 160 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~--------------------------f~~wrg~~~~L~DT~Gi~~t~~ern~e 160 (595)
-.+-|-..|++||+++.+.|.+..... ...+....+.+.||+|... + ..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~---~~ 89 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF--Y---NA 89 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS--C---SH
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH--H---HH
Confidence 345667788999999987776543322 1112234577899999532 1 11
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCc----hHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCC-
Q psy9995 161 FWRQLWRVIERSDVIVQIVDARNPLLFRC----EDLERYVKEV---SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV- 232 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR~Pl~~~~----~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi- 232 (595)
+++ ..+..+|++|+|+|+.++....+ ..+..++.++ ..+.|+|||+||+||.+........+++...+.
T Consensus 90 ~~~---~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 90 SRK---LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKF 166 (198)
T ss_dssp HHH---HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCS
T ss_pred HHH---HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCc
Confidence 222 36789999999999986543322 2244555543 146899999999999765444445556666787
Q ss_pred eEEEEecccCCC
Q psy9995 233 AVAFFSATNIYD 244 (595)
Q Consensus 233 ~vi~~SA~~~~~ 244 (595)
.++.+||+++.+
T Consensus 167 ~~~~~Sa~~~~g 178 (198)
T 3t1o_A 167 PVLEAVATEGKG 178 (198)
T ss_dssp CEEECBGGGTBT
T ss_pred eEEEEecCCCcC
Confidence 899999998876
No 46
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.65 E-value=1.4e-08 Score=104.95 Aligned_cols=61 Identities=33% Similarity=0.543 Sum_probs=50.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEE--c--CCceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLF--V--DDELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~--~--~~~~~liDtPGl~~p~ 381 (595)
..-.|+++|.||||||||+|+|++.+...++..||+|++..... . +..++++||||+..+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 34689999999999999999999988777899999999865422 2 4578999999997654
No 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.64 E-value=9.7e-09 Score=95.66 Aligned_cols=127 Identities=13% Similarity=-0.076 Sum_probs=78.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-|-..|+.|||++.+.|...+-. ....+.+ ..+.+.||+|...-... + ...+..+|
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----~---~~~~~~~~ 79 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF-----P---QTYSIDIN 79 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC-----C---GGGTTTCS
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH-----H---HHHHhcCC
Confidence 4556678999999999999854321 1122334 34579999996432110 1 12456899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++.++. .+..++..+ ..+.|++||+||+|+..... .....++....+..++.+||+++.+
T Consensus 80 ~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 80 GYILVYSVTSIKSFE--VIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT 155 (181)
T ss_dssp EEEEEEETTCHHHHH--HHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 999999998765442 233333222 23689999999999954311 1222333445578899999987654
No 48
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.64 E-value=2.3e-08 Score=91.29 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=82.5
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQI 178 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~V 178 (595)
+-|-..|+.|||++.+.|...+-. ....+.+..+.+.||+|... -..++ ...+..+|++++|
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~-----~~~~~---~~~~~~~d~~i~v 74 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK-----IRPLW---RHYFQNTQGLIFV 74 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGG-----GHHHH---HHHTTTCSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChh-----hHHHH---HHHhccCCEEEEE
Confidence 345567899999999998764321 12345667788999999631 11122 2357899999999
Q ss_pred EeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 179 VDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 179 vDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
+|+.++.++. .+..++..+ . .+.|+++|+||+|+.+......+.+.+. ..+++++.+||+++.+
T Consensus 75 ~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 75 VDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp EETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999875432 233343332 1 3689999999999976533334444332 1245688899998766
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.63 E-value=1.2e-08 Score=94.23 Aligned_cols=128 Identities=11% Similarity=0.044 Sum_probs=84.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhh--cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQW--RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~w--rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|...+-. ....+ ....+.|.||+|... + . ......+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~---~---~~~~~~~~~ 87 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER--F---R---AVTRSYYRG 87 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG--T---C---HHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH--h---h---hhHHHHhcc
Confidence 45667788999999999998865421 01112 234567899999431 1 1 123346789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+..+ .....++....++.++.+||+++.+
T Consensus 88 ~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 88 AAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164 (179)
T ss_dssp CSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred CCEEEEEEeCcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998875542 233333322 35789999999999964321 2333445556688999999998866
No 50
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.63 E-value=1.3e-08 Score=96.12 Aligned_cols=131 Identities=12% Similarity=0.086 Sum_probs=86.1
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.-.+.|-..|+.|||++.+.|...+.. ....+.+..+.|.||+|...-. .++ ...+..+|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~---~~~~~~~d 92 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-----NLW---EHYYKEGQ 92 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTG-----GGG---GGGGGGCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHH-----HHH---HHHHhcCC
Confidence 456778888999999999998866521 2235667788999999953211 111 23578999
Q ss_pred eEEEEEeCCCCCCCCc--hHHHHHHHHhC---CCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCC
Q psy9995 174 VIVQIVDARNPLLFRC--EDLERYVKEVS---PHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIY 243 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~--~~Le~~lk~v~---~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~ 243 (595)
++|+|+|+.++.++.. ..+..++.... .+.|+|||+||+|+........+.+++. ..++.++.+||+++.
T Consensus 93 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 93 AIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 9999999988744322 12222332111 4789999999999976433334444442 235678899998876
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 173 g 173 (190)
T 2h57_A 173 G 173 (190)
T ss_dssp T
T ss_pred C
Confidence 5
No 51
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.63 E-value=2.1e-08 Score=93.89 Aligned_cols=58 Identities=33% Similarity=0.463 Sum_probs=48.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC-CceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD-DELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~-~~~~liDtPGl~~ 379 (595)
..+|++||.||||||||+|+|++.....++..||+|.++. .+.++ ..+.++||||+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 4789999999999999999999877666889999998864 34444 3688999999863
No 52
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.63 E-value=2e-08 Score=92.20 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=83.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+-|-..|+.|||++.+.|...+-. ....|.+..+.+.||+|... +. .+| ...+..+|++|+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~--~~---~~~---~~~~~~~d~ii~ 80 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS--IR---PYW---RCYYSNTDAVIY 80 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGG--GG---GGG---GGGCTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChh--hh---HHH---HHHhccCCEEEE
Confidence 4556678889999998888654321 12346677888999999632 11 111 235678999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHH-----hhCCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYF-----NSVNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~-----~~~gi~vi~~SA~~~~~ 244 (595)
|+|+.++.++. .+..++..+ . .+.|+++|+||+|+.+......+.+.+ ...++.++.+||+++.+
T Consensus 81 v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 81 VVDSCDRDRIG--ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp EEETTCCTTHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred EEECCCHHHHH--HHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 99999886542 223333222 1 478999999999998753333444433 22355788999988765
No 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.63 E-value=2.3e-08 Score=92.75 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=84.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|...+-.. ...+. ...+.|.||+|... +. ......+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~------~~~~~~~~~ 84 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER--YH------SLAPMYYRG 84 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG--GG------GGTHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh--hh------hhhHHHhcc
Confidence 456677889999999999988653221 11122 34677899999432 11 112235788
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++ ..+..++..+ ..+.|+++|+||+|+.+..+ ...+.++....++.++.+||+++.+
T Consensus 85 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 85 AAAAIIVFDVTNQASF--ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161 (181)
T ss_dssp CSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred CCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 9999999999887653 2233443332 24678999999999975321 2334445556688999999988765
No 54
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.63 E-value=1e-08 Score=96.03 Aligned_cols=130 Identities=17% Similarity=0.099 Sum_probs=85.6
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
..-.+-|-..|+.|||++.+.|...+.. ....+.+..+.+.||+|... +.......+..+|+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~~d~ 88 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS--------LRSYWRNYFESTDG 88 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHH--------HHTTGGGGCTTCSE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHh--------HHHHHHHHhcCCCE
Confidence 3445667788888888888888765411 12335577788999999631 11112235778999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
+|+|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+......+.+.+. ..++.++.+||+++.+
T Consensus 89 ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (186)
T 1ksh_A 89 LIWVVDSADRQRMQ--DCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED 166 (186)
T ss_dssp EEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEEECcCHHHHH--HHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCC
Confidence 99999999886542 233333322 14689999999999976544444444442 2355788899988765
No 55
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.62 E-value=2.8e-08 Score=95.70 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=86.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc------------CeeeEEEeCCCcccChhhhhHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR------------RELNLLQEEDGLVITPYEKNLD 160 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr------------g~~~~L~DT~Gi~~t~~ern~e 160 (595)
.-.+-|-..|+.|||++.+.|....-. ....+. ...+.|.||+|.. .
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--------~ 96 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------R 96 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------H
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH--------h
Confidence 345777889999999999998854321 011222 3457789999931 2
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhC-----CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCe
Q psy9995 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVS-----PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVA 233 (595)
Q Consensus 161 ~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~-----~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~ 233 (595)
+.......+..+|++|+|+|+.++.++ ..+..++..+. .+.|+|||+||+|+.+... .....++....++.
T Consensus 97 ~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 97 FRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174 (217)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred HHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence 222334578899999999999876543 34556666553 4689999999999965311 12223334455788
Q ss_pred EEEEecccCCC
Q psy9995 234 VAFFSATNIYD 244 (595)
Q Consensus 234 vi~~SA~~~~~ 244 (595)
++.+||+++.+
T Consensus 175 ~~~~Sa~~g~g 185 (217)
T 2f7s_A 175 YFETSAATGQN 185 (217)
T ss_dssp EEEEBTTTTBT
T ss_pred EEEEECCCCCC
Confidence 99999998765
No 56
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.62 E-value=3.7e-08 Score=104.43 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=88.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
+.|-..||.||||++|.|.+.+.. ..+.+.+..+.+.||+|++........+-++.++..+..+|+|
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~i 261 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDAL 261 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEE
Confidence 557889999999999999976542 2345667888999999975531111223356666778899999
Q ss_pred EEEEeCCCCCCCCchH---HHHHHHHhC-CCCcEEEEEeCCCCCCHH--HHHHHH----HHHhhCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCED---LERYVKEVS-PHKRNMILLNKADLLTRK--QRCYWT----KYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~---Le~~lk~v~-~~K~~ILVlNK~DLl~~~--~~~~w~----~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+.+|....... +...+..+. .++|+|+|+||+|+++.. ++.... ..+...+.+++++||+++.+
T Consensus 262 l~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~g 340 (364)
T 2qtf_A 262 ILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTN 340 (364)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBS
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcC
Confidence 9999998774111111 233444442 468999999999998743 211222 22211123678899988765
No 57
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.62 E-value=2.7e-08 Score=100.25 Aligned_cols=55 Identities=35% Similarity=0.517 Sum_probs=46.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
.+|+++|.||||||||+|+|++.. ..++..||+|.+... +.. +..+.++||||+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~ 59 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVY 59 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcc
Confidence 369999999999999999999876 789999999987654 333 4578999999986
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.61 E-value=2.4e-08 Score=93.65 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=63.3
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh--CCCCcEEEEEeCCCCCC-
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV--SPHKRNMILLNKADLLT- 216 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v--~~~K~~ILVlNK~DLl~- 216 (595)
..+.|.||||... +. ......+..+|++|+|+|+.+|.++ ..+..++..+ ..+.|+++|+||+|+..
T Consensus 93 ~~~~i~Dt~G~~~--~~------~~~~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~piilv~NK~D~~~~ 162 (208)
T 3clv_A 93 IKFDIWDTAGQER--YA------SIVPLYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISSNYIIILVANKIDKNKF 162 (208)
T ss_dssp EEEEEEECTTGGG--CT------TTHHHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCCEEEEEEECTTCC-C
T ss_pred eEEEEEECCCcHH--HH------HHHHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhCCCcEEEEEECCCcccc
Confidence 5678999999432 11 1123467899999999999987654 2333444333 13489999999999421
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 217 RKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 217 ~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
........+++...++.++.+||+++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 190 (208)
T 3clv_A 163 QVDILEVQKYAQDNNLLFIQTSAKTGTN 190 (208)
T ss_dssp CSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred cCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 1123444555666788999999998765
No 59
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.60 E-value=2.8e-08 Score=93.15 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=85.8
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
.-.+-|-..|+.|||++.+.|...+-. ....+.+..+.+.||+|... +. .++ ...+..+|++
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~---~~~~~~~d~i 92 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES--LR---SSW---NTYYTNTEFV 92 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGG--GT---CGG---GGGGTTCCEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHh--HH---HHH---HHHhccCCEE
Confidence 345778888999999999999865422 12345677889999999632 11 111 2356889999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHH-----hhCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYF-----NSVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~-----~~~gi~vi~~SA~~~~~ 244 (595)
|+|+|+.++.++. .+..++..+ ..+.|+|||+||+|+........+.+++ ...++.++.+||+++.+
T Consensus 93 i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 93 IVVVDSTDRERIS--VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEETTCTTTHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHH--HHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 9999999886542 233333322 2578999999999997642233334433 22345788999988765
No 60
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.60 E-value=3.9e-08 Score=98.87 Aligned_cols=60 Identities=32% Similarity=0.372 Sum_probs=49.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p 380 (595)
..++|+++|.+|||||||+|+|++.....++..+|+|.+.....+ +..+.|+||||+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 468999999999999999999999887788999999988765432 457899999998743
No 61
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.60 E-value=3.9e-08 Score=99.28 Aligned_cols=60 Identities=30% Similarity=0.381 Sum_probs=50.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCccC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVMP 380 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~p 380 (595)
..++|+++|.+|||||||+|+|++.....+++++|+|.....+.+ +..+.++||||+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 468999999999999999999999887788999999988765543 346899999998643
No 62
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.60 E-value=2.8e-08 Score=95.09 Aligned_cols=58 Identities=36% Similarity=0.493 Sum_probs=40.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcCCceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~ 379 (595)
..+|+++|.+|||||||+|+|++.. ...+++++|+|.....+.++.++.++||||+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 4789999999999999999999876 566789999999877776666899999999864
No 63
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.59 E-value=3.9e-09 Score=107.29 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=85.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccCh-----hhhhHHHHHHHHHHH
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITP-----YEKNLDFWRQLWRVI 169 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~-----~ern~e~~rql~~vi 169 (595)
.+.+-..||.||||++|.|.+..-. ....+.+..+.|+||||+.... ......+++. ....
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~-~~~~ 83 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH-YILS 83 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-HHhh
Confidence 3456678999999999999875411 2344567788999999975422 1222223332 3345
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+.+|++|+|+|+.++. +...+...+.+ .+.|+|+|+||+|+..... ...+.+ ..|.+++++||+++.|
T Consensus 84 ~~~d~ii~VvD~~~~~--~~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~i~~SA~~g~g 155 (274)
T 3i8s_A 84 GDADLLINVVDASNLE--RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSA---RLGCPVIPLVSTRGRG 155 (274)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHH---HHTSCEEECCCGGGHH
T ss_pred cCCCEEEEEecCCChH--HHHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHH---hcCCCEEEEEcCCCCC
Confidence 7999999999998632 23333344443 3789999999999865421 233333 3378999999988755
No 64
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.59 E-value=1.3e-08 Score=101.69 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=88.4
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHH----
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLW---- 166 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~---- 166 (595)
.-++.+-.+|+.||||+.|.|.+.... ....|.+..+.|+||||+..+......++.+.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 346778899999999999999865421 2345778889999999987654322122333443
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhC----CCCcEEEEEeCCCCCCHHHH--------HHHHHHHhhCCCeE
Q psy9995 167 RVIERSDVIVQIVDARNPLLFRCEDLERYVKEVS----PHKRNMILLNKADLLTRKQR--------CYWTKYFNSVNVAV 234 (595)
Q Consensus 167 ~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~----~~K~~ILVlNK~DLl~~~~~--------~~w~~~~~~~gi~v 234 (595)
.....+|+||+|+|+.. +...+..+.+++.++. .+.|+|||.||+||...... ..........|..+
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp HHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred hcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 44489999999999974 3333334445555431 15789999999999653111 12233344557778
Q ss_pred EEEeccc
Q psy9995 235 AFFSATN 241 (595)
Q Consensus 235 i~~SA~~ 241 (595)
++|++..
T Consensus 180 ~~~~~~~ 186 (247)
T 3lxw_A 180 CAFDNRA 186 (247)
T ss_dssp EECCTTC
T ss_pred EEEeCCC
Confidence 8887754
No 65
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.58 E-value=4.9e-08 Score=107.05 Aligned_cols=102 Identities=14% Similarity=0.032 Sum_probs=64.9
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC----chHH---HHHHHHhCCCCcEEEE
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFR----CEDL---ERYVKEVSPHKRNMIL 208 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~----~~~L---e~~lk~v~~~K~~ILV 208 (595)
.+.+..+.|+||||... +.+.....+..+|++|+|+|++++.++. .... ..++.. ...+++|+|
T Consensus 107 ~~~~~~~~iiDTPG~~~--------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvv 177 (483)
T 3p26_A 107 STHRANFTIVDAPGHRD--------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIA 177 (483)
T ss_dssp ECSSCEEEEECCCCCGG--------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEE
T ss_pred ecCCceEEEEECCCcHH--------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEE
Confidence 45677889999999732 3456667789999999999999874321 1222 222332 223679999
Q ss_pred EeCCCCCC--HHHHH----HHHHHHhhC-----CCeEEEEecccCCCCC
Q psy9995 209 LNKADLLT--RKQRC----YWTKYFNSV-----NVAVAFFSATNIYDDI 246 (595)
Q Consensus 209 lNK~DLl~--~~~~~----~w~~~~~~~-----gi~vi~~SA~~~~~~~ 246 (595)
+||+|+.+ ....+ .+.+++... +.+++++||+++.+..
T Consensus 178 iNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~ 226 (483)
T 3p26_A 178 MNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 226 (483)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred EECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence 99999986 22222 223334333 3478999999988743
No 66
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.58 E-value=3.3e-08 Score=92.42 Aligned_cols=55 Identities=33% Similarity=0.413 Sum_probs=48.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~ 379 (595)
++|+++|.+|||||||+|+|++.. +.++..||+|.+...+... .+.++||||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccc
Confidence 579999999999999999999875 7788899999998887776 899999999753
No 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=9e-08 Score=90.41 Aligned_cols=125 Identities=10% Similarity=0.031 Sum_probs=83.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|...+-. ......+..+.|.||+|.. .+.......+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~ 95 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE--------RYRTITTAYYRG 95 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH--------HCHHHHHHHHTT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH--------HHHHHHHHHHcc
Confidence 35667788999999999999876521 1112345667888999831 112223346789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
+|++|+|+|+.++.++. .+..++..+ ..+.|+|||+||+|+... +....+. ...++.++.+||+++
T Consensus 96 ~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~ 170 (191)
T 3dz8_A 96 AMGFILMYDITNEESFN--AVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLA---EQLGFDFFEASAKEN 170 (191)
T ss_dssp CCEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH---HHHTCEEEECBTTTT
T ss_pred CCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHH---HHcCCeEEEEECCCC
Confidence 99999999998775542 233344333 247899999999998543 2333333 344788999999887
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 171 ~g 172 (191)
T 3dz8_A 171 IS 172 (191)
T ss_dssp BS
T ss_pred CC
Confidence 65
No 68
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.57 E-value=2.8e-08 Score=92.84 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=83.2
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH---------H-----hhhhc-----------CeeeEEEeCCCcccChhhhhHHH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD---------E-----FLQWR-----------RELNLLQEEDGLVITPYEKNLDF 161 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~---------~-----f~~wr-----------g~~~~L~DT~Gi~~t~~ern~e~ 161 (595)
-.+-|-..|+.|||++.+.|....-. . ...+. ...+.|.||+|.. +-.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~-- 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE-----RFR-- 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG-----GGH--
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH-----HHH--
Confidence 34567778999999999998864321 0 11122 2467899999962 111
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh---C--CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeE
Q psy9995 162 WRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV---S--PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAV 234 (595)
Q Consensus 162 ~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~--~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~v 234 (595)
......+..+|++|+|+|+.++.++.. +..++..+ . .+.|++||+||+|+.+... .....++....++++
T Consensus 85 -~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 85 -SLTTAFFRDAMGFLLLFDLTNEQSFLN--VRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161 (195)
T ss_dssp -HHHHHTTTTCSEEEEEEETTCHHHHHT--HHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCE
T ss_pred -HHHHHHHcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCE
Confidence 223346789999999999988765432 33343332 1 5789999999999965311 122233344457889
Q ss_pred EEEecccCCC
Q psy9995 235 AFFSATNIYD 244 (595)
Q Consensus 235 i~~SA~~~~~ 244 (595)
+.+||+++.+
T Consensus 162 ~~~Sa~~~~~ 171 (195)
T 3bc1_A 162 FETSAANGTN 171 (195)
T ss_dssp EECCTTTCTT
T ss_pred EEEECCCCCC
Confidence 9999988765
No 69
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.56 E-value=4e-08 Score=101.30 Aligned_cols=56 Identities=36% Similarity=0.425 Sum_probs=47.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
..|++||.||||||||+|+|++.+...++..||+|++... +.. +..+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4799999999999999999999887778999999997543 222 4468899999986
No 70
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.55 E-value=2.1e-08 Score=94.49 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=83.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|... +. ......+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~------~~~~~~~~~ 88 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER--FR------TITSSYYRG 88 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG--GC------TTHHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh--hh------hhHHHHHhh
Confidence 35667788999999999999864321 1223444 4567889999432 11 112346788
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++. .+..++..+ ..+.|+|||+||+|+.+... ......+....+++++.+||+++.+
T Consensus 89 ~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165 (196)
T ss_dssp CSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred CCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 99999999998875432 233333322 34679999999999975421 1222333445578999999998876
No 71
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.55 E-value=1.6e-07 Score=104.20 Aligned_cols=103 Identities=23% Similarity=0.249 Sum_probs=76.0
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHH--------------------------HHH---------HhhhhcCeeeEEEeCCC
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAM--------------------------ERD---------EFLQWRRELNLLQEEDG 149 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~--------------------------Er~---------~f~~wrg~~~~L~DT~G 149 (595)
....+.|-..|+.||||+.|.|... |+. ....|.+..+.|+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 3456778889999999999999511 111 23567888999999999
Q ss_pred cccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH
Q psy9995 150 LVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR 217 (595)
Q Consensus 150 i~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~ 217 (595)
...- .....+.+..+|.+|+|+|+.++.......+...+. ..+.|+|+|+||+|+...
T Consensus 92 ~~df--------~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~--~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADF--------TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCR--LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTC--------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHH--TTTCCEEEEEECTTSCCS
T ss_pred chhH--------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCEEEEEeCCCCccc
Confidence 6431 223556788999999999999887655555555554 457899999999999753
No 72
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.54 E-value=2.4e-08 Score=91.17 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=81.9
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+.|-..|+.|||++.+.|...+-. ....+.+..+.+.||+|... +. ......+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~------~~~~~~~~~~ 79 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER--YH------SLAPMYYRGA 79 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG--GG------GGHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH--hh------hhhHHhccCC
Confidence 4556678999999999999864321 01122345678999999532 11 1123457889
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++ ..+..++..+ ..+.|+++|+||+|+.+... .....++....++.++.+||+++.+
T Consensus 80 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 80 QAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155 (170)
T ss_dssp SEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred CEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999887543 2233343332 34678899999999964311 1233344455678899999988765
No 73
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.54 E-value=5.8e-08 Score=97.86 Aligned_cols=56 Identities=36% Similarity=0.465 Sum_probs=47.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
.++|+++|.||||||||+|+|++.. ..++..||+|.+.....+ +..+.++||||+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~ 63 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY 63 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcC
Confidence 4789999999999999999999876 668999999988665433 4478999999986
No 74
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.54 E-value=3.7e-08 Score=91.85 Aligned_cols=128 Identities=14% Similarity=0.081 Sum_probs=63.8
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|... + .......+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~------~~~~~~~~~~ 80 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER--F------RTITTAYYRG 80 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------CCTTTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh--h------hhhHHHHHhc
Confidence 34667789999999999998754311 1122444 4577899999531 1 1112235678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++ ..+..++..+ ..+.|++||+||+|+.+... ......+....+++++.+||+++.+
T Consensus 81 ~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157 (183)
T ss_dssp CSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CC
T ss_pred CCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999999887543 2334444333 24679999999999965211 1222233344578899999998766
No 75
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.54 E-value=4.2e-08 Score=90.62 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=82.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|...+.. ....+.+ ..+.+.||+|...-.. .....+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~ 81 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT--------ITSTYYRG 81 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS--------CCGGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh--------hHHHHhcc
Confidence 45667789999999999999765432 1223455 4567889999432111 11224678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++ ..+..++..+ ..+.|+|||+||+|+.+... ......+....+.+++.+||+++.+
T Consensus 82 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 82 THGVIVVYDVTSAESF--VNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157 (181)
T ss_dssp CSEEEEEEETTCHHHH--HHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred CCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 9999999999887543 2233344333 34689999999999865321 1222333344478899999998765
No 76
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.54 E-value=3.8e-08 Score=97.10 Aligned_cols=61 Identities=33% Similarity=0.379 Sum_probs=43.1
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCC--CCceeeEEEE--c-CCceEEEeCCCCccCC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP--GKTKHFQTLF--V-DDELLLCDCPGLVMPS 381 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP--G~TKh~Qti~--~-~~~~~liDtPGl~~p~ 381 (595)
...++|++||.+|||||||+|+|++... ..+..| ++|.+++... + +..+.|+||||+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~ 92 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTE 92 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCC
Confidence 3468999999999999999999998764 445555 7888876543 3 4578999999997543
No 77
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.54 E-value=4.3e-08 Score=93.02 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=61.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH---------------Hhhhhc----CeeeEEEeCCCcccChhhhhHHHHHHHHH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWR----RELNLLQEEDGLVITPYEKNLDFWRQLWR 167 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wr----g~~~~L~DT~Gi~~t~~ern~e~~rql~~ 167 (595)
-.+.|-..|+.|||++.+.|...++. ....+. ...+.|.||+|... +......
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~ 92 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL--------YKEQISQ 92 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHH--------HHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH--------HHHHHHH
Confidence 35667778899999999998876221 012233 34678999999631 1122234
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh---C----CCCcEEEEEeCCCCCC-HHH--HHHHHHHHhhCCCeEEEE
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKEV---S----PHKRNMILLNKADLLT-RKQ--RCYWTKYFNSVNVAVAFF 237 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~----~~K~~ILVlNK~DLl~-~~~--~~~w~~~~~~~gi~vi~~ 237 (595)
.+..+|++|+|+|+.++.++ ..+..++..+ . .+.|+|||+||+|+.+ ... .....++....+..++.+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 170 (208)
T 2yc2_C 93 YWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDV 170 (208)
T ss_dssp TCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEEC
T ss_pred HHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEe
Confidence 57789999999999887643 2334444433 1 4789999999999976 321 233344455667899999
Q ss_pred eccc-CCC
Q psy9995 238 SATN-IYD 244 (595)
Q Consensus 238 SA~~-~~~ 244 (595)
||++ +.+
T Consensus 171 Sa~~~~~g 178 (208)
T 2yc2_C 171 SANPPGKD 178 (208)
T ss_dssp CC------
T ss_pred ccCCCCcC
Confidence 9998 766
No 78
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=3.6e-08 Score=93.36 Aligned_cols=129 Identities=18% Similarity=0.056 Sum_probs=86.0
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
.-.+.|-..|+.|||++.+.|...+-. ......+..+.|.||+|... +. ......+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~------~~~~~~~~ 94 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER--FH------SLAPMYYR 94 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG--GG------GGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh--hH------hhhHHhhc
Confidence 346778889999999999999865411 00112345678899999432 11 11223578
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|++|+|+|+.++.++ ..+..++..+ ..+.|++||+||+|+.+.. ......++....+.+++.+||+++.+
T Consensus 95 ~~d~iilV~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSF--YTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp TCSEEEEEEETTCTHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred cCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 89999999999887643 2334444333 2468999999999996421 12344455556688999999988765
No 79
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.53 E-value=6.3e-08 Score=108.63 Aligned_cols=61 Identities=30% Similarity=0.289 Sum_probs=45.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCC-CCceeeEEE------EcCCceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATP-GKTKHFQTL------FVDDELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tP-G~TKh~Qti------~~~~~~~liDtPGl~~p~ 381 (595)
..++|+|||.||||||||||+|+|.... .++.++ ++|+..... ..+..++|+||||+..+.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 4588999999999999999999998642 444333 556655322 135679999999998654
No 80
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=2.6e-08 Score=92.32 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=79.8
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.+.|-..|+.|||++.+.|...+.. ....+.+. .+.+.||+|... +.......+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ 83 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER--------FRSVTHAYYRD 83 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------CCGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHH--------HHHHHHHHccC
Confidence 4556678899999999998765431 01133343 567889999421 11223346789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++.. +..++..+ ..+.|++||+||+|+.+.. .......+....++.++.+||+++.+
T Consensus 84 ~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDN--IQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp CSEEEEEEETTCHHHHHT--HHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred CCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999988765422 33333322 2578999999999997532 11222333344578899999998766
No 81
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.53 E-value=3.9e-08 Score=89.90 Aligned_cols=127 Identities=18% Similarity=0.157 Sum_probs=81.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|....-. ....+. ...+.+.||+|... +. ......+..+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~------~~~~~~~~~~ 79 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER--FR------ALAPMYYRGS 79 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG--GG------GGTHHHHTTC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchh--hh------cccHhhCcCC
Confidence 3556678999999999999865411 111222 24567999999631 11 1223467899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++++|+|+.++.++. .+..++..+ ....|+++|+||+|+.+..+ ......+....+..++.+||+++.+
T Consensus 80 ~~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 80 AAAIIVYDITKEETFS--TLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155 (170)
T ss_dssp SEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred CEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 9999999998876532 233333322 34678899999999975321 1122233345578899999988765
No 82
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.53 E-value=5e-08 Score=97.37 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=49.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCC-CceeeEEE--Ec-CCceEEEeCCCCccCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG-KTKHFQTL--FV-DDELLLCDCPGLVMPS 381 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG-~TKh~Qti--~~-~~~~~liDtPGl~~p~ 381 (595)
..++|+|||.||||||||+|+|++.....++..|+ +|++++.. .. +..+.|+||||+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 45899999999999999999999987677777776 88886642 22 4579999999987543
No 83
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.52 E-value=1.4e-08 Score=93.90 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=80.8
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----H---------hhhhcC---eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----E---------FLQWRR---ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----~---------f~~wrg---~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.+.|-..|+.|||++.+.|...+-. . ...+.+ ..+.+.||+|... +. .++ ...+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~---~~~---~~~~~~ 79 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI--GG---KML---DKYIYG 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT--TC---TTH---HHHHTT
T ss_pred EEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc--cc---chh---hHHHhh
Confidence 4556788999999999999865321 1 112333 5678999999532 11 112 235789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhC------CCCc-EEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVS------PHKR-NMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~------~~K~-~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
+|++|+|+|+.++.++.. +..++..+. ...| ++||+||+|+.+... ......+....+++++.+||+++
T Consensus 80 ~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 80 AQGVLLVYDITNYQSFEN--LEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTG 157 (178)
T ss_dssp CSEEEEEEETTCHHHHHT--HHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred CCEEEEEEECCCHHHHHH--HHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 999999999988765422 333333221 2455 789999999964211 12222333445788999999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 158 ~g 159 (178)
T 2hxs_A 158 DS 159 (178)
T ss_dssp TT
T ss_pred CC
Confidence 66
No 84
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.52 E-value=3.3e-08 Score=94.08 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=78.6
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+.|-..|+.|||++.+.|...+-. ....+.+..+.+.||+|... +. .++ ...+..+|++|+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~---~~~~~~~d~iil 102 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDK--IR---PLW---RHYFQNTQGLIF 102 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-------C---TTH---HHHHHTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHh--HH---HHH---HHHhccCCEEEE
Confidence 4555567778888888777532211 12456677888999999632 11 112 235789999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
|+|+.++.++ ..+..++..+ . .+.|+|||+||+|+.+......+.+.+. ..+..++.+||+++.+
T Consensus 103 v~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 103 VVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 9999987543 2233444332 1 3689999999999976533344444432 1245688899988765
No 85
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.52 E-value=3e-08 Score=91.48 Aligned_cols=128 Identities=19% Similarity=0.133 Sum_probs=82.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+.|-..|+.|||++.+.|....-. ....+.+ ..+.+.||+|... +. ......+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~------~~~~~~~~~ 86 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FR------SLIPSYIRD 86 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG--GG------GGSHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH--HH------HHHHHHhcC
Confidence 34667788999999999998754311 0111333 3577899999532 11 112235788
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+..+ ......+....++.++.+||+++.+
T Consensus 87 ~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 87 STVAVVVYDITNTNSFH--QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163 (179)
T ss_dssp CSEEEEEEETTCHHHHH--THHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred CCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999998775432 233333322 34688999999999965322 2233344445578999999988765
No 86
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.52 E-value=6.5e-08 Score=98.45 Aligned_cols=56 Identities=32% Similarity=0.505 Sum_probs=48.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc--CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV--DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~--~~~~~liDtPGl~ 378 (595)
.++|+++|.||||||||+|+|++.. ..++..||+|.+.....+ +..+.++||||..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~ 60 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIY 60 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcC
Confidence 4789999999999999999999875 678999999988665444 4579999999986
No 87
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.52 E-value=8.7e-08 Score=88.17 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=42.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCC---ceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD---ELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~~ 379 (595)
.++|+++|.+|||||||+|+|++.....++.++|.|.....+.++. .+.++||||...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 5899999999999999999999987777788899987766666654 578999999763
No 88
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.52 E-value=8.1e-08 Score=91.05 Aligned_cols=129 Identities=14% Similarity=0.077 Sum_probs=81.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
.-.+-|-..++.|||++.+.|...... ....+.+ ..+.|.||+|... -..+ ....+.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----~~~~---~~~~~~ 97 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER-----FNSI---TSAYYR 97 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGG-----GHHH---HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHH-----HHHH---HHHHhc
Confidence 345677889999999999999865432 1122334 3567899999431 1122 334678
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHH---HHh-CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhh-CCCeEEEEecccCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYV---KEV-SPHKRNMILLNKADLLTRKQ--RCYWTKYFNS-VNVAVAFFSATNIY 243 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~l---k~v-~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~-~gi~vi~~SA~~~~ 243 (595)
.+|++|+|+|+.++.++.. +..++ ... ..+.|++||+||+|+.+..+ .....++... .+..++.+||+++.
T Consensus 98 ~~d~iilV~D~~~~~s~~~--~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDD--LPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp HCSEEEEEEETTCHHHHHT--HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred CCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 9999999999998765433 22333 222 34689999999999965321 1122233333 26788999998876
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 176 g 176 (192)
T 2il1_A 176 N 176 (192)
T ss_dssp S
T ss_pred C
Confidence 5
No 89
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.51 E-value=8.5e-08 Score=96.81 Aligned_cols=56 Identities=38% Similarity=0.579 Sum_probs=47.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEE--c-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLF--V-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~--~-~~~~~liDtPGl~ 378 (595)
.++|+++|.||||||||+|+|++.. ..++..||+|.++.... . +..+.++||||+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 61 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIY 61 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCcc
Confidence 3789999999999999999999876 48999999998875433 2 4568999999986
No 90
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.51 E-value=2.1e-07 Score=100.65 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=67.6
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
.+.+..+.|+||||... +.+.....+..+|++|+|+|++++...........+.. ...+++|+|+||+|+.
T Consensus 100 ~~~~~~~~iiDtpGh~~--------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 100 STAKRKFIIADTPGHEQ--------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIKHIVVAINKMDLN 170 (434)
T ss_dssp ECSSEEEEEEECCCSGG--------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEEECTTTT
T ss_pred ecCCceEEEEECCChHH--------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEEcCcCC
Confidence 44567788999999531 22334456789999999999998764332222233332 2235689999999998
Q ss_pred C--HHH----HHHHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 216 T--RKQ----RCYWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 216 ~--~~~----~~~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
+ ++. ...+.+++...+ .+++++||+++.+.
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi 211 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNV 211 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTT
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCc
Confidence 6 222 234555666666 57889999998774
No 91
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.51 E-value=4.3e-08 Score=96.77 Aligned_cols=135 Identities=7% Similarity=0.061 Sum_probs=81.8
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChh---hhhHHHHHHHHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPY---EKNLDFWRQLWR 167 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~---ern~e~~rql~~ 167 (595)
...+-|-.+|+.||||+.|.|.+.... ....|.+..+.|+||||+..+.. +...++.+.+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 346778889999999999999865431 23567888999999999876432 222344444444
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHH-h--CCCCcEEEEEeCCCCCCHHHHHH--------HHHHHhhCCCeEEE
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKE-V--SPHKRNMILLNKADLLTRKQRCY--------WTKYFNSVNVAVAF 236 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~-v--~~~K~~ILVlNK~DLl~~~~~~~--------w~~~~~~~gi~vi~ 236 (595)
....+|++|+|+|+.. +..........+.+ . ...+|+|||+||+|++....... ..+.....+..+++
T Consensus 109 ~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~ 187 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCA 187 (239)
T ss_dssp TTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEE
T ss_pred cCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEE
Confidence 5556799999999864 33322222222221 1 12468999999999987654432 22233444667888
Q ss_pred Eeccc
Q psy9995 237 FSATN 241 (595)
Q Consensus 237 ~SA~~ 241 (595)
|++..
T Consensus 188 ~~~~~ 192 (239)
T 3lxx_A 188 LNNKA 192 (239)
T ss_dssp CCTTC
T ss_pred EECCC
Confidence 87754
No 92
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.51 E-value=2.3e-08 Score=100.78 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=84.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vie~sD 173 (595)
.+.+-..||.||||++|.|.+.... ....+.+..+.|+||||... .+......+.+... ....+|
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~d 85 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL-LKGDAD 85 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH-HHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH-hhcCCC
Confidence 4567789999999999999874421 22334567889999999753 22222222223322 126899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+.++. +...+...+. ..+.|+|+|+||+|+..... ...+.+ ..|++++++||+++.|
T Consensus 86 ~ii~V~D~t~~~--~~~~~~~~l~--~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~---~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 86 LVILVADSVNPE--QSLYLLLEIL--EMEKKVILAMTAIDEAKKTGMKIDRYELQK---HLGIPVVFTSSVTGEG 153 (258)
T ss_dssp EEEEEEETTSCH--HHHHHHHHHH--TTTCCEEEEEECHHHHHHTTCCBCHHHHHH---HHCSCEEECCTTTCTT
T ss_pred EEEEEeCCCchh--hHHHHHHHHH--hcCCCEEEEEECcCCCCccchHHHHHHHHH---HcCCCEEEEEeeCCcC
Confidence 999999998743 1222223333 45789999999999864322 233333 3478999999998766
No 93
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.51 E-value=6.4e-08 Score=87.86 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=78.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|... ...++. ..+..+|.
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-----~~~~~~---~~~~~~~~ 77 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ-----FASMRD---LYIKNGQG 77 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-----CHHHHH---HHHHHCSE
T ss_pred EEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchh-----hHHHHH---HHhccCCE
Confidence 456678999999999998864321 0111222 3377999999532 112222 35788999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+..+ ......+....+.+++.+||+++.+
T Consensus 78 ~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 78 FILVYSLVNQQSFQ--DIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152 (167)
T ss_dssp EEEEEETTCHHHHH--HHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH
T ss_pred EEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcC
Confidence 99999998765432 222222211 24789999999999865321 1122233334478899999988654
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.51 E-value=1e-07 Score=88.54 Aligned_cols=128 Identities=10% Similarity=-0.037 Sum_probs=83.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.||+++.+.|...+-. ....+.+ ..+.|.||+|... ...++ ...+..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~~~~---~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-----YAAIR---DNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-----CHHHH---HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc-----cHHHH---HHHhccC
Confidence 35667788999999999998864411 0112333 3567999999532 11222 2357789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++++|+|+.++.++. .+..++..+ ..+.|++||+||+|+.+.. ......+++...+++++++||+++.+
T Consensus 91 d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 91 EGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167 (187)
T ss_dssp SEEEEEEETTCHHHHH--HHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 9999999998775432 223332222 2368999999999996532 22344455556688999999988765
No 95
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.50 E-value=4.5e-08 Score=92.17 Aligned_cols=128 Identities=10% Similarity=-0.001 Sum_probs=83.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|...+-. ......+..+.|.||+|...- .. . ....+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~---~---~~~~~~~ 94 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY--RT---I---TTAYYRG 94 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS--CC---S---GGGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH--hh---h---HHHhccC
Confidence 45667788999999999998865421 011223456789999995321 11 1 1235678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++. .+..++..+ ..+.|++||+||+|+.+... .....++....++.++.+||+++.+
T Consensus 95 ~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFA--AVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp CSEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999998775442 233343333 24689999999999975321 1222333344578999999988765
No 96
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.50 E-value=3e-08 Score=108.78 Aligned_cols=58 Identities=31% Similarity=0.493 Sum_probs=29.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~~ 379 (595)
.++|++||.||||||||+|+|++.....|+..||+|+++.. +.+ +..+.++||||+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 48899999999999999999999887889999999999753 444 44689999999864
No 97
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.50 E-value=8.7e-08 Score=88.60 Aligned_cols=128 Identities=19% Similarity=0.136 Sum_probs=79.8
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH-------------HHhhhhcCeeeEEEeCCCcccC-hhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER-------------DEFLQWRRELNLLQEEDGLVIT-PYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er-------------~~f~~wrg~~~~L~DT~Gi~~t-~~ern~e~~rql~~vie~sD 173 (595)
.+.|-..|+.||||+.+.|.+... .....|.+..+.+.||+|...- +......+.+.. .....+|
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDY-IINEKPD 83 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHH-HHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHH-HhcCCCC
Confidence 355667899999999999976321 0123456778899999997542 111111222221 1224799
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHH----HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRK----QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~----~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++. .+..++..+ ..+.|+|+|.||+|+.... +...|.+. .+.+++.+||+++.+
T Consensus 84 ~~i~v~D~~~~~-----~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 84 LVVNIVDATALE-----RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKI---LGVKVVPLSAAKKMG 151 (165)
T ss_dssp EEEEEEETTCHH-----HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHH---HTSCEEECBGGGTBS
T ss_pred EEEEEecCCchh-----HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHH---hCCCEEEEEcCCCCC
Confidence 999999997531 122232222 2478999999999985321 22344433 367899999998765
No 98
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.50 E-value=1.7e-07 Score=102.82 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=87.4
Q ss_pred cccCCCCCCCCcCCCHHHHHHHH-----------HH---------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHH
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAME-----------RD---------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWR 167 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~E-----------r~---------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~ 167 (595)
.+.|-..++.||||+.+.|.+.+ ++ ....+.+..+.|+||||. ..+.+.+..
T Consensus 21 ~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh--------~~~~~~~~~ 92 (482)
T 1wb1_A 21 NLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH--------ADLIRAVVS 92 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH--------HHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh--------HHHHHHHHH
Confidence 45566778888888888886533 21 223456778999999995 235566777
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH----HHHHHHhhC----CCeEEEEec
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC----YWTKYFNSV----NVAVAFFSA 239 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~----~w~~~~~~~----gi~vi~~SA 239 (595)
.+..+|++|+|+|+.++......+....+.. .+.|.|+|+||+|+.+.+... .+.+++... +.+++++||
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 8899999999999998654333332333332 367889999999999864432 334445444 468899999
Q ss_pred ccCCC
Q psy9995 240 TNIYD 244 (595)
Q Consensus 240 ~~~~~ 244 (595)
+++.+
T Consensus 171 ~~g~g 175 (482)
T 1wb1_A 171 KTGFG 175 (482)
T ss_dssp TTCTT
T ss_pred cCCCC
Confidence 98765
No 99
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.49 E-value=5.6e-08 Score=88.34 Aligned_cols=126 Identities=10% Similarity=-0.030 Sum_probs=79.3
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|+.|||++.+.|...+-. ....+.+ ..+.|.||+|... -..++ ...+..+|.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~-----~~~~~---~~~~~~~d~ 78 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED-----YAAIR---DNYFRSGEG 78 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------CHHHH---HHHHHHCSE
T ss_pred EEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcch-----hHHHH---HHHhhcCCE
Confidence 445677889999999998865311 0112333 3567999999432 11222 235778999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+.. .......+....+.+++.+||+++.+
T Consensus 79 ~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T 1u8z_A 79 FLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153 (168)
T ss_dssp EEEEEETTCHHHHH--HHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 99999998775432 223332222 2378999999999996531 12233344445578899999998866
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.49 E-value=3.9e-08 Score=91.57 Aligned_cols=128 Identities=15% Similarity=0.050 Sum_probs=79.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
-.+.|-..|+.|||++.+.|...+.. ....+.+..+.+.||+|...-.. .+ ...+..+|+++
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~---~~~~~~~d~ii 90 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-----YW---RCYYADTAAVI 90 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCT-----TG---GGTTTTEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHH-----HH---HHHhccCCEEE
Confidence 34556667778888888777633211 12345567788999999643110 11 23567899999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHhh-----CCCeEEEEecccCCC
Q psy9995 177 QIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFNS-----VNVAVAFFSATNIYD 244 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-----~gi~vi~~SA~~~~~ 244 (595)
+|+|+.++.++ ..+..++..+ ..+.|+++|+||+|+.+......+.+++.. .+.+++.+||+++.+
T Consensus 91 ~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (183)
T 1moz_A 91 FVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG 166 (183)
T ss_dssp EEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred EEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 99999888543 3334444433 256899999999999764333444444422 234688999988765
No 101
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.49 E-value=3.7e-08 Score=94.18 Aligned_cols=129 Identities=10% Similarity=0.011 Sum_probs=84.1
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
.-.+-|-..|+.|||++.+.|....-.. ...+.+ ..+.|.||+|... + .......+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--~------~~~~~~~~~ 96 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER--F------RSVTRSYYR 96 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHH--H------SCCCHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHh--H------HHHHHHHhc
Confidence 3467788899999999999998544320 111233 4678899999421 1 111234678
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|++|+|+|+.++.++. .+..++..+ ..+.|++||+||+|+.+... ......+....++.++.+||+++.+
T Consensus 97 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 174 (200)
T 2o52_A 97 GAAGALLVYDITSRETYN--SLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174 (200)
T ss_dssp TCSEEEEEEETTCHHHHH--THHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred cCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 899999999998876542 233443332 35789999999999964321 1233444556688999999998876
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.48 E-value=3.7e-08 Score=107.92 Aligned_cols=128 Identities=13% Similarity=0.021 Sum_probs=86.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
-.+.|-.+||+|||++++.|...+.. ....+.+..+.|.||+|... +.. + ....++.+|+||
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~---~---~~~~~~~ad~~i 394 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK--IRP---L---WRHYYTGTQGLI 394 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGG--GSG---G---GGGGGTTCCEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHH--HHH---H---HHHHhccCCEEE
Confidence 45678899999999999999876532 22346778899999999432 111 1 223678999999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHHhh-----CCCeEEEEecccCCC
Q psy9995 177 QIVDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYFNS-----VNVAVAFFSATNIYD 244 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-----~gi~vi~~SA~~~~~ 244 (595)
+|+|+.++..+ ..+..++..+ . .++|+|||+||+||..........+.+.. .+..++++||+++.|
T Consensus 395 ~V~D~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 395 FVVDCADRDRI--DEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp EEEETTCGGGH--HHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEECcchhHH--HHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 99999987543 2233333332 1 47899999999999754333333333321 234688999998866
No 103
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.48 E-value=2.1e-08 Score=110.09 Aligned_cols=57 Identities=32% Similarity=0.530 Sum_probs=49.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~-~~~~~liDtPGl~ 378 (595)
.++|++||+||||||||+|+|++.....|+..||+|+++. .+.+ +..+.++||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 3799999999999999999999988788999999999864 3444 4578999999997
No 104
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.48 E-value=6.2e-08 Score=103.92 Aligned_cols=43 Identities=23% Similarity=0.049 Sum_probs=33.2
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 202 HKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 202 ~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|+|+|+||+|+...+....+.+++...+..++++||+.+.+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~ 256 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhh
Confidence 4899999999999865555666666655567899999987654
No 105
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.48 E-value=1.2e-08 Score=102.96 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=83.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
+.+-..|+.||||++|.|.+.... ....|.+..+.++||||+..-......+...........+|+|
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 85 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVI 85 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEE
Confidence 445678999999999999875321 3456778888999999976422222222222222334789999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHhCCC-CcEEEEEeCCCCCCHHH----HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEVSPH-KRNMILLNKADLLTRKQ----RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v~~~-K~~ILVlNK~DLl~~~~----~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|+|+|+.++. ++..+...+. ..+ .|+++|+||+|+.+... ...+.+ ..|++++++||+.+.+
T Consensus 86 i~v~D~~~~~--~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 86 VDIVDSTCLM--RNLFLTLELF--EMEVKNIILVLNKFDLLKKKGAKIDIKKMRK---ELGVPVIPTNAKKGEG 152 (271)
T ss_dssp EEEEEGGGHH--HHHHHHHHHH--HTTCCSEEEEEECHHHHHHHTCCCCHHHHHH---HHSSCEEECBGGGTBT
T ss_pred EEEecCCcch--hhHHHHHHHH--hcCCCCEEEEEEChhcCcccccHHHHHHHHH---HcCCcEEEEEeCCCCC
Confidence 9999998642 2222222222 234 89999999999865432 223333 3378999999998876
No 106
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.48 E-value=1.3e-08 Score=107.09 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=86.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC-eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR-ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg-~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.+-..||+||||+.+.|....-. ....+.+ ..+.|.||||++.... ....+..+..+.++++|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~-~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH-QGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT-CTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCccccc-ccchhHHHHHHHHHhcc
Confidence 3557889999999999999864311 1223443 6688999999764211 11123445566788999
Q ss_pred eEEEEEeCCCCCCC-CchHHHHH---HHHhC---CCCcEEEEEeCCCCCCHHH-HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLF-RCEDLERY---VKEVS---PHKRNMILLNKADLLTRKQ-RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~-~~~~Le~~---lk~v~---~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++... ....+..+ +.... ..+|+|||+||+|+....+ ...+.+.+.. ..+++.+||+++.+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~~v~~iSA~tg~g 316 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DYPVFPISAVTREG 316 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CCCBCCCSSCCSST
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CCCEEEEECCCCcC
Confidence 99999999652110 11223333 33222 3789999999999987543 3444444421 25788899988766
No 107
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.47 E-value=1.4e-07 Score=100.87 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=85.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHH---------------------HHHH---------hhhhcCeeeEEEeCCCcccChhhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAM---------------------ERDE---------FLQWRRELNLLQEEDGLVITPYEK 157 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~---------------------Er~~---------f~~wrg~~~~L~DT~Gi~~t~~er 157 (595)
.+.|-..|+.||||+.+.|... |++. ...|.+..+.|+||||...
T Consensus 13 ~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~----- 87 (405)
T 2c78_A 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD----- 87 (405)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG-----
T ss_pred EEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH-----
Confidence 4556678888888888888764 1110 1345667889999999642
Q ss_pred hHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCCC-HHHH----HHHHHHHhhCC
Q psy9995 158 NLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLLT-RKQR----CYWTKYFNSVN 231 (595)
Q Consensus 158 n~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl~-~~~~----~~w~~~~~~~g 231 (595)
+.+.+...+..+|++|+|+|+.++...........+.. .+.| +|+|+||+|+.+ .+.. ....+++...+
T Consensus 88 ---f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 ---YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp ---GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 34556667889999999999998765433333333432 3567 789999999984 3221 23334454444
Q ss_pred -----CeEEEEecccCCC
Q psy9995 232 -----VAVAFFSATNIYD 244 (595)
Q Consensus 232 -----i~vi~~SA~~~~~ 244 (595)
.+++++||+++.+
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 5789999988754
No 108
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.47 E-value=2.8e-08 Score=90.71 Aligned_cols=126 Identities=14% Similarity=0.067 Sum_probs=80.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|+.|||++.+.|...+-. ....+. ...+.+.||+|... +. ......+..+|
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~--~~------~~~~~~~~~~d 77 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER--FA------SLAPXYYRNAQ 77 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG--GG------GGHHHHHTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChh--hh------hhhhhhhccCc
Confidence 445678899999999998865421 011222 23677899999431 11 11234678999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCH---HH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTR---KQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~---~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++.++ ..+..++..+ ..+.|+++|+||+|+.+. .+ .....++....+..++.+||+++.+
T Consensus 78 ~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 78 AALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999987543 2333343332 356889999999999653 11 1111223334578899999998766
No 109
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.47 E-value=4.8e-08 Score=104.77 Aligned_cols=56 Identities=34% Similarity=0.411 Sum_probs=30.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE----E-------------------cC----CceEEEeCC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL----F-------------------VD----DELLLCDCP 375 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti----~-------------------~~----~~~~liDtP 375 (595)
++|++||.||||||||+|+|++.+ +.+++.||+|++...- . ++ ..+.++|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999987 8899999999874321 1 01 258899999
Q ss_pred CCcc
Q psy9995 376 GLVM 379 (595)
Q Consensus 376 Gl~~ 379 (595)
|+..
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9963
No 110
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.47 E-value=7.5e-08 Score=90.82 Aligned_cols=128 Identities=15% Similarity=0.090 Sum_probs=84.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH---------h------hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE---------F------LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~---------f------~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+.|-..|+.|||++.+.|...+... + ....+..+.|.||+|... +. .+ ....+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~---~~~~~~~ 97 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER--YR---AI---TSAYYRG 97 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT--TC---TT---HHHHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh--hh---hh---hHHHhcc
Confidence 457788999999999999998754320 0 111234567899999642 11 11 2235789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++. .+..++..+ ..+.|++||+||+|+.+... ......+....++.++.+||+++.+
T Consensus 98 ~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 98 AVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174 (193)
T ss_dssp CCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred CCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998876532 233444333 24678999999999965311 1222334445688999999998766
No 111
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.47 E-value=1.2e-07 Score=95.93 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=39.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecC-------CCCCceeeEEEEcC--C---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSA-------TPGKTKHFQTLFVD--D---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~-------tPG~TKh~Qti~~~--~---~~~liDtPGl~ 378 (595)
.++|++||.||||||||+|+|++......+. .|+++..+....+. . .+.++||||+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 5899999999999999999999877555443 45555555544442 2 68999999985
No 112
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.47 E-value=3.5e-08 Score=93.89 Aligned_cols=127 Identities=11% Similarity=0.038 Sum_probs=81.9
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------Hh------hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------EF------LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~f------~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+.|-..|+.|||++.+.|...+-. .+ ....+..+.|.||+|... -..+ ....+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~~~---~~~~~~~~ 81 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER-----YRTI---TTAYYRGA 81 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----GHHH---HHTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchh-----hcch---HHHhhcCC
Confidence 4566678899999999988764411 00 112244678999999631 1112 23467899
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++ ..+..++..+ ..+.|++||+||+|+.+... ......+....+++++.+||+++.+
T Consensus 82 d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 82 MGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157 (203)
T ss_dssp SEEEEEEETTCHHHH--HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 999999999887543 2233444333 24789999999999975311 1222223334478899999998876
No 113
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.46 E-value=1e-07 Score=89.77 Aligned_cols=126 Identities=16% Similarity=0.090 Sum_probs=81.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHH-HHHHHHHh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFW-RQLWRVIE 170 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~-rql~~vie 170 (595)
-.+-|-..|+.|||++.+.|...+-. ....+.+ ..+.|.||+|... +. ......+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~ 92 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER--------FRKSMVQHYYR 92 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH--------HHTTTHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh--------hhhhhhHHHhc
Confidence 45677789999999999998764321 1122333 4678899999421 11 12234578
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
.+|++|+|+|+.++.++.. +..++.++ ..+.|+|||+||+|+.+..+ ......+....++.++.+||+++
T Consensus 93 ~~d~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHS--LPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp TCCEEEEEEETTCHHHHHT--HHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred CCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 9999999999988755422 22232222 35689999999999964311 12222333445788999999987
No 114
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.46 E-value=2.9e-07 Score=96.93 Aligned_cols=93 Identities=19% Similarity=0.104 Sum_probs=61.0
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCC
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADL 214 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DL 214 (595)
+.+.+..+.|+||+|+..+. ..+++.+|+||+|+|+...... ..+...+ ..+|.++|+||+|+
T Consensus 167 ~~~~~~~~iiiDTpGi~~~~-----------~~~~~~aD~vl~V~d~~~~~~~--~~l~~~~----~~~p~ivVlNK~Dl 229 (355)
T 3p32_A 167 LEAAGFDVILIETVGVGQSE-----------VAVANMVDTFVLLTLARTGDQL--QGIKKGV----LELADIVVVNKADG 229 (355)
T ss_dssp HHHTTCCEEEEEECSCSSHH-----------HHHHTTCSEEEEEEESSTTCTT--TTCCTTS----GGGCSEEEEECCCG
T ss_pred HhhCCCCEEEEeCCCCCcHH-----------HHHHHhCCEEEEEECCCCCccH--HHHHHhH----hhcCCEEEEECCCC
Confidence 46678899999999975421 1246899999999997543221 1111111 13688999999999
Q ss_pred CCHHHHHHHHHHHhh-----------CCCeEEEEecccCCC
Q psy9995 215 LTRKQRCYWTKYFNS-----------VNVAVAFFSATNIYD 244 (595)
Q Consensus 215 l~~~~~~~w~~~~~~-----------~gi~vi~~SA~~~~~ 244 (595)
.+..........+.. .+.+++++||+++.|
T Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 230 EHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred cChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 876544333333222 146799999998766
No 115
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.46 E-value=1.2e-07 Score=89.98 Aligned_cols=128 Identities=18% Similarity=0.068 Sum_probs=83.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
..+.|-..|+.|||++.+.+...+-. ....+.+..+.+.||+|..... .++ ...+..+|+++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----~~~---~~~~~~~d~~i 95 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR-----RLW---KDYFPEVNGIV 95 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGT-----TSG---GGGCTTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHH-----HHH---HHHHhcCCEEE
Confidence 45677788899999998888763311 2334567778899999964311 111 12457899999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHhh------------CCCeEEEEec
Q psy9995 177 QIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFNS------------VNVAVAFFSA 239 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~------------~gi~vi~~SA 239 (595)
+|+|+.++.++. .+..++..+ ..+.|+++|+||+|+......+.+.+++.. .+.+++.+||
T Consensus 96 ~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFD--EARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHH--HHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999876432 233333322 246899999999999753223334444332 2346788999
Q ss_pred ccCCC
Q psy9995 240 TNIYD 244 (595)
Q Consensus 240 ~~~~~ 244 (595)
+++.+
T Consensus 174 ~~g~g 178 (190)
T 1m2o_B 174 VMRNG 178 (190)
T ss_dssp TTTBS
T ss_pred CcCCC
Confidence 88765
No 116
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.46 E-value=2e-07 Score=84.84 Aligned_cols=126 Identities=12% Similarity=0.019 Sum_probs=78.5
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH------------hhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE------------FLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~------------f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|+.|||++.+.|...+-.. ...+. ...+.+.||+|...- . .+++ ..+..+|+
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~---~~~~---~~~~~~d~ 77 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF--T---AMRD---LYMKNGQG 77 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS--T---THHH---HHHHHCSE
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHH--H---HHHH---HHhccCCE
Confidence 4566789999999999998642110 01122 345678999995421 1 1122 35678999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhC-CCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSV-NVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~-gi~vi~~SA~~~~~ 244 (595)
+++|+|+.++.++.. +..++..+ ..+.|+++|+||+|+.+... ......+.... +.+++.+||+++.+
T Consensus 78 ~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 78 FALVYSITAQSTFND--LQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153 (167)
T ss_dssp EEEEEETTCHHHHHT--HHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHH--HHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCC
Confidence 999999988754322 22222211 34789999999999965321 12222333333 67899999988765
No 117
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.46 E-value=6.8e-08 Score=89.30 Aligned_cols=128 Identities=12% Similarity=0.046 Sum_probs=79.7
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
..+.|-..|+.|||++.+.|...+-. ....+.+..+.+.||||...-... + ...+..+|
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----~---~~~~~~~d 80 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM-----R---ARGAQVTD 80 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS-----C---CSSCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH-----H---HHHHhhCC
Confidence 45566778888999998888753211 113456778889999995321111 1 13467899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--HHHHHHHHHHhh----CC--CeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR--KQRCYWTKYFNS----VN--VAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~--~~~~~w~~~~~~----~g--i~vi~~SA~~~~~ 244 (595)
++|+|+|+.++......+....+. ..+.|+++|+||+|+.+. +....+...+.. .+ ..++.+||+++.+
T Consensus 81 ~~i~v~d~~~~~~~~~~~~l~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTVEAINHAK--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHG--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEEEEECCCCCcHHHHHHHHHHH--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 999999998875433222222222 346899999999999863 222222221110 11 4688899988754
No 118
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.45 E-value=8.4e-08 Score=91.89 Aligned_cols=129 Identities=11% Similarity=0.070 Sum_probs=84.3
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH---------Hh----hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD---------EF----LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~---------~f----~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
.-.+.|-..|+.||+++.+.|....-. .+ ..+.+ ..+.|.||+|... -..+ ....+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~---~~~~~~ 100 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER-----FRTI---TQSYYR 100 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGG-----GHHH---HHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHh-----HHHH---HHHHHh
Confidence 345778889999999999998754211 11 22344 3677899999531 1122 234678
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCC-eEEEEecccCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNV-AVAFFSATNIY 243 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi-~vi~~SA~~~~ 243 (595)
.+|++|+|+|+.++.++. .+..++..+ ..+.|+|||+||+|+.... ......++....++ .++.+||+++.
T Consensus 101 ~~d~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 101 SANGAILAYDITKRSSFL--SVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp TCSEEEEEEETTBHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred hCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 999999999998775532 233343333 2568999999999996521 11223334445577 88999999876
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 179 g 179 (201)
T 2hup_A 179 N 179 (201)
T ss_dssp S
T ss_pred C
Confidence 6
No 119
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.3e-07 Score=104.71 Aligned_cols=131 Identities=14% Similarity=0.057 Sum_probs=85.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHH-----------------------------------HHH---------HhhhhcCeee
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAM-----------------------------------ERD---------EFLQWRRELN 142 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~-----------------------------------Er~---------~f~~wrg~~~ 142 (595)
-.+.|-..|+.||||+.+.|... |+. ....+.+..+
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~ 247 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 247 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceE
Confidence 35667899999999999998632 111 1234566688
Q ss_pred EEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 143 LLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPL-------LFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 143 ~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl-------~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
.|+||||... +.+.+...+..+|++|+|+|+.++. ..........+.. ...+++|||+||+|+.
T Consensus 248 ~iiDTPG~e~--------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 248 TIVDAPGHRD--------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNV 318 (611)
T ss_dssp EEEECCSSSC--------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTT
T ss_pred EEEECCCCcc--------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEeccccc
Confidence 9999999632 4556666788999999999998641 1111122222221 1235689999999998
Q ss_pred C--HHH----HHHHHHHHhhCC-----CeEEEEecccCCCCC
Q psy9995 216 T--RKQ----RCYWTKYFNSVN-----VAVAFFSATNIYDDI 246 (595)
Q Consensus 216 ~--~~~----~~~w~~~~~~~g-----i~vi~~SA~~~~~~~ 246 (595)
+ ... ...+..++...| ++++++||+++.+..
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~ 360 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY 360 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTS
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcc
Confidence 7 221 222333444333 578999999998743
No 120
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=1.1e-07 Score=86.96 Aligned_cols=129 Identities=9% Similarity=-0.061 Sum_probs=78.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-|-..|+.|||++.+.|....-. .........+.+.||+|...- ..+++ ..+..+|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-----~~~~~---~~~~~~~ 76 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF-----PAMQR---LSISKGH 76 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC-----HHHHH---HHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhh-----HHHHH---HhcccCC
Confidence 3455678899999999998763211 011122345789999995421 12222 3567899
Q ss_pred eEEEEEeCCCCCCCCc-hHHHHHHHHhC---CCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRC-EDLERYVKEVS---PHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~-~~Le~~lk~v~---~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++.++.. ..+...+.+.. .+.|+++|+||+|+.+..+. .....+....+++++.+||+++.+
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 77 AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153 (172)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcC
Confidence 9999999988754422 12222233221 36899999999999653211 111222334477899999988765
No 121
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.45 E-value=8.4e-08 Score=90.21 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
...+.|-..|+.|||++.+.|...+-. ....+.+..+.+.||+|... -...| ...+..+|++
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~---~~~~~~~~~~ 87 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK-----IRPYW---RSYFENTDIL 87 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGG-----GHHHH---HHHHTTCSEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHH-----HHHHH---HHHhCCCCEE
Confidence 345667788999999999998765321 12345567788999999532 11122 3467899999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHh-----hCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFN-----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~-----~~gi~vi~~SA~~~~~ 244 (595)
++|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+......+.+.+. ..+..++.+||+++.+
T Consensus 88 i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 88 IYVIDSADRKRFE--ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp EEEEETTCGGGHH--HHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEECcCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 9999998875432 233343332 14689999999999976433334444332 2245688899998876
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=1.7e-07 Score=87.69 Aligned_cols=56 Identities=34% Similarity=0.525 Sum_probs=46.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.. ..++..||+|.+... +.. +..+.++||||..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 65 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcC
Confidence 5799999999999999999999865 678889999987654 333 4568899999986
No 123
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.44 E-value=6.6e-08 Score=90.12 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=78.9
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-|-..|+.|||++.+.|....-. ....+.+.. +.|.||+|...- . .+++ ..+..+|
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--~---~~~~---~~~~~~~ 77 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--S---AMRD---QYMRTGE 77 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----C---TTHH---HHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH--H---HHHH---HHHhcCC
Confidence 3556678999999999999864421 111233333 567999994321 1 1122 3567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH----HHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR----KQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~----~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+. +....+. ...+.+++.+||+++.+
T Consensus 78 ~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 78 GFLCVFAINNTKSFE--DIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA---RSYGIPFIETSAKTRQG 152 (189)
T ss_dssp EEEEEEETTCHHHHH--HHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH---HHHTCCEEECCTTTCTT
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH---HHcCCeEEEEeCCCCCC
Confidence 999999998775432 233333222 246899999999999753 2333333 33478899999998876
No 124
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.44 E-value=2e-07 Score=91.09 Aligned_cols=60 Identities=38% Similarity=0.440 Sum_probs=44.6
Q ss_pred CCCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCcc
Q psy9995 319 NPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVM 379 (595)
Q Consensus 319 ~~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~ 379 (595)
....++|+++|.+|||||||+|+|++.. +.++..|++|+++..... +..+.++||||...
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 3456899999999999999999999876 558889999998765432 34789999999953
No 125
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.44 E-value=1.3e-07 Score=90.34 Aligned_cols=127 Identities=15% Similarity=0.066 Sum_probs=77.8
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+.|-..|+.|||++.+.|...+-. ....+.+..+.+.||+|...-. .+|+ ..+..+|++++
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~---~~~~~~d~~i~ 98 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQAR-----RVWK---NYLPAINGIVF 98 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----C-----CGGG---GGGGGCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhH-----HHHH---HHHhcCCEEEE
Confidence 4566677888888888887643221 2344667788899999953211 0111 25678999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCC---HHHHHHHHHHHh--------------hCCCeEE
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLT---RKQRCYWTKYFN--------------SVNVAVA 235 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~---~~~~~~w~~~~~--------------~~gi~vi 235 (595)
|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.. .++...+..... ..+..++
T Consensus 99 v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLL--ESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHH--HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 99998875432 233333322 14689999999999964 333333332111 1234678
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 177 ~~SA~~g~g 185 (198)
T 1f6b_A 177 MCSVLKRQG 185 (198)
T ss_dssp ECBTTTTBS
T ss_pred EEECCCCCC
Confidence 889988765
No 126
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.44 E-value=3.5e-08 Score=92.06 Aligned_cols=127 Identities=9% Similarity=-0.010 Sum_probs=83.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|... -. ......+..+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~---~~~~~~~~~~ 83 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-----FR---SVTRSYYRGA 83 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-----GH---HHHHTTSTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH-----HH---HHHHHHHhcC
Confidence 4556678899999999998764321 1122333 4677899999431 11 1223467889
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++.. +..++..+ ..+.|++||+||+|+.+... ......+....++.++.+||+++.+
T Consensus 84 d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 84 AGALLVYDITSRETYNA--LTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159 (186)
T ss_dssp SEEEEEEETTCHHHHHT--HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 99999999988765422 33333222 35789999999999964311 1233344555688999999998866
No 127
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.44 E-value=9.6e-08 Score=101.22 Aligned_cols=56 Identities=34% Similarity=0.457 Sum_probs=41.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC------------------CceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD------------------DELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~------------------~~~~liDtPGl~~ 379 (595)
++|++||.||||||||+|+|++.. +.+++.||+|.+.. .+.++ ..+.++||||+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 689999999999999999999876 78999999998753 23333 3689999999974
No 128
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.44 E-value=1.1e-07 Score=97.45 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=61.9
Q ss_pred eeeEEEeCCCcccCh-----hhhhHHHHHHHHHHHhhcCeEEEEEeC-CCCCCCCch-HHHHHHHHhCCCCcEEEEEeCC
Q psy9995 140 ELNLLQEEDGLVITP-----YEKNLDFWRQLWRVIERSDVIVQIVDA-RNPLLFRCE-DLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~-----~ern~e~~rql~~vie~sDvVl~VvDA-R~Pl~~~~~-~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
..+.|+||||+...+ ......+.......+..+|++++|+|+ ..++..... .+.+++. ..++|+|+|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~--~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD--PEGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC--SSCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC--CCCCcEEEEEcCc
Confidence 468899999987533 223345566777889999999999997 444443332 4555553 3578999999999
Q ss_pred CCCCHHHHHHHHHHHhh----CCCeEEEEecccC
Q psy9995 213 DLLTRKQRCYWTKYFNS----VNVAVAFFSATNI 242 (595)
Q Consensus 213 DLl~~~~~~~w~~~~~~----~gi~vi~~SA~~~ 242 (595)
|+++... .+.+++.. .+..++.+|+..+
T Consensus 209 Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa 240 (315)
T 1jwy_B 209 DLMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQ 240 (315)
T ss_dssp TSSCSSC--CCHHHHTTSSSCCTTCEEECCCCCH
T ss_pred ccCCcch--HHHHHHhCCCccCCCCeEEEecCCh
Confidence 9986543 12233322 1244555665544
No 129
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.43 E-value=9.4e-08 Score=88.37 Aligned_cols=56 Identities=34% Similarity=0.525 Sum_probs=40.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
..+|+++|.+|||||||+|+|++.. ..++..||+|.++.. +.+ +..+.++||||..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcc
Confidence 3689999999999999999999864 456788998877543 333 4568999999986
No 130
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.42 E-value=1.9e-07 Score=90.30 Aligned_cols=129 Identities=16% Similarity=-0.001 Sum_probs=73.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHHH------------hhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERDE------------FLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~~------------f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.|-..|+.|||++.+.|....-.. ...+.+. .+.|.||+|... + .......+..+|
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~--~------~~~~~~~~~~~d 107 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD--Y------DRLRPLFYPDAS 107 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------CEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchh--h------hHHHHHHhccCC
Confidence 45566788899999999987543210 1122333 567899999421 1 111223577999
Q ss_pred eEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH--------------HHHHHHhhCCC-eEEE
Q psy9995 174 VIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQRC--------------YWTKYFNSVNV-AVAF 236 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~--------------~w~~~~~~~gi-~vi~ 236 (595)
++|+|+|+.++.++... .+...+.....+.|+|||+||+|+.+..... ...++....+. .++.
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 108 VLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 99999999887654321 1222233234578999999999997654221 11233344566 8899
Q ss_pred EecccCCC
Q psy9995 237 FSATNIYD 244 (595)
Q Consensus 237 ~SA~~~~~ 244 (595)
+||+++.+
T Consensus 188 ~SA~~g~g 195 (214)
T 2j1l_A 188 CSARLHDN 195 (214)
T ss_dssp CBTTTTBS
T ss_pred ecCCCCCC
Confidence 99988765
No 131
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.41 E-value=9.9e-08 Score=86.55 Aligned_cols=57 Identities=39% Similarity=0.562 Sum_probs=38.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~~ 379 (595)
.+|+++|.+|||||||+|+|++.....++..|++|.++....+ +..+.++||||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 4799999999999999999998775667889999988765432 45789999999864
No 132
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.41 E-value=1.5e-07 Score=89.26 Aligned_cols=128 Identities=10% Similarity=-0.038 Sum_probs=82.8
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+-|-..|+.|||++.+.|...+-. ....+.+ ..+.|.||+|...- ..++ ...+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~---~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-----AAIR---DNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-----HHHH---HHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh-----HHHH---HHHHhhC
Confidence 35667788999999999998865411 1112333 35678999995321 1222 2357789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|.+++|+|+.++.++. .+..++..+ ..+.|+|||+||+|+.+.. .......+....+++++.+||+++.+
T Consensus 87 ~~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 87 EGFLCVFSITEMESFA--ATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163 (206)
T ss_dssp SEEEEEEETTCHHHHH--HHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 9999999998775432 223332222 2378999999999996532 12233344445578899999998876
No 133
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.41 E-value=9.5e-08 Score=88.79 Aligned_cols=129 Identities=12% Similarity=-0.023 Sum_probs=79.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+.|-..|+.|||++.+.|....-. ....+.+ ..+.+.||+|... +. .+++ ..+..+|
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~~---~~~~~~d 78 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED--YD---RLRP---LSYPQTD 78 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG--GT---TTGG---GGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHh--HH---HHHH---HhccCCc
Confidence 3456677888999988888753211 0112233 3445889999632 11 1111 2467899
Q ss_pred eEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHHH--------------HHHHHHHhhCCC-eEEE
Q psy9995 174 VIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQR--------------CYWTKYFNSVNV-AVAF 236 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~--------------~~w~~~~~~~gi-~vi~ 236 (595)
++++|+|+.++.++... .+...+.....+.|++||+||+|+.+.... .....+....+. .++.
T Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1mh1_A 79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (186)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999887654322 122333333347899999999999764321 122233344565 8899
Q ss_pred EecccCCC
Q psy9995 237 FSATNIYD 244 (595)
Q Consensus 237 ~SA~~~~~ 244 (595)
+||+++.+
T Consensus 159 ~Sa~~g~g 166 (186)
T 1mh1_A 159 CSALTQRG 166 (186)
T ss_dssp CCTTTCTT
T ss_pred ecCCCccC
Confidence 99988765
No 134
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.40 E-value=4.6e-08 Score=93.44 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=82.7
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
.-.+.|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|... +.. .....+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~------~~~~~~~ 91 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER--FRT------ITTAYYR 91 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG--GTC------CCHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH--HHH------HHHHHhc
Confidence 345677788999999999998854321 1223444 4578899999532 111 1234578
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCH----HHHHHHHHHHhhCCCeEEEEecccC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTR----KQRCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~----~~~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
.+|++|+|+|+.++.++.. +..++..+ ..+.|+|||+||+|+... ++...|. ...+++++.+||+++
T Consensus 92 ~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~ 166 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTN--IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA---KELGIPFIESSAKND 166 (213)
T ss_dssp TCSEEEEEEETTCHHHHHT--HHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHH---HHHTCCEEECBTTTT
T ss_pred cCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHH---HHcCCEEEEEeCCCC
Confidence 9999999999987754322 33333322 236899999999999532 2333333 344778999999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 167 ~g 168 (213)
T 3cph_A 167 DN 168 (213)
T ss_dssp BS
T ss_pred CC
Confidence 76
No 135
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.40 E-value=8.3e-08 Score=88.64 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=81.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-|-..++.|||++.+.|....-. ....+.+ ..+.|.||+|... +. .+++ ..+..+|
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~---~~~~---~~~~~~d 82 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE--FG---AMRE---QYMRAGH 82 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT--TS---CCHH---HHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchh--hH---HHHH---HHHhhCC
Confidence 4556678999999999998865211 1123444 3567899999532 11 1122 3567899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++.++. .+..++..+ ..+.|++||+||+|+.+..+ ......+....+..++.+||+++.+
T Consensus 83 ~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 83 GFLLVFAINDRQSFN--EVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158 (181)
T ss_dssp EEEEEEETTCHHHHH--HHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred EEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 999999998765432 233333222 34689999999999975321 1222233345578899999988765
No 136
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.39 E-value=1.1e-07 Score=87.44 Aligned_cols=125 Identities=13% Similarity=0.012 Sum_probs=76.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHH-HHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQL-WRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql-~~vie~s 172 (595)
.+.|-..|+.|||++.+.|...+.. ....+.+. .+.+.||+|.....+ +.+ ...+..+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~~ 78 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK-------SWSQESCLQGG 78 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC--------------CHHHHHTTTSC
T ss_pred EEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccch-------hhhHHhhcccC
Confidence 4567788999999999999865533 11233443 456899999643111 111 2345679
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
|++++|+|+.++.++. .+..++..+ ..+.|+|+|+||+|+.+. ++...|. ...+.+++.+||+++
T Consensus 79 ~~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~g 153 (175)
T 2nzj_A 79 SAYVIVYSIADRGSFE--SASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA---VVFDCKFIETSATLQ 153 (175)
T ss_dssp SEEEEEEETTCHHHHH--HHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH---HHHTSEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH---HHcCCeEEEEecCCC
Confidence 9999999998775532 233333222 236899999999999753 2223333 344778999999998
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 154 ~g 155 (175)
T 2nzj_A 154 HN 155 (175)
T ss_dssp BS
T ss_pred CC
Confidence 76
No 137
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.76 E-value=3.7e-08 Score=94.11 Aligned_cols=130 Identities=12% Similarity=-0.070 Sum_probs=78.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.|||++.+.|....-. ....+.+. .+.+.||+|... -..++ ...+..+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~---~~~~~~~ 102 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----YDRLR---PLSYPQT 102 (204)
Confidence 45667778888999888777643211 11123333 344889999531 11112 2356789
Q ss_pred CeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHH--------------HHHHHHHHhhCCC-eEE
Q psy9995 173 DVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQ--------------RCYWTKYFNSVNV-AVA 235 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~--------------~~~w~~~~~~~gi-~vi 235 (595)
|++|+|+|+.++.++... .+...+.....+.|++||+||+|+.+... ...+..+....+. +++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 999999999988765432 12222221123688999999999976421 1122223333454 778
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 183 ~vSA~~g~g 191 (204)
T 3th5_A 183 ECSALTQRG 191 (204)
Confidence 899998876
No 138
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.39 E-value=1.3e-07 Score=95.72 Aligned_cols=135 Identities=13% Similarity=0.021 Sum_probs=78.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH---------------------HhhhhcCe--eeEEEeCCCcccChhhh------
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD---------------------EFLQWRRE--LNLLQEEDGLVITPYEK------ 157 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~---------------------~f~~wrg~--~~~L~DT~Gi~~t~~er------ 157 (595)
-.+-|-..|+.||||+.|.|...... ..+.|.+. .+.|+||||+.......
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 34667789999999999997633211 12334443 67899999985432111
Q ss_pred hHHHHHHHHHHHhh-------------cCeEEEEEeCCC-CCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHH-
Q psy9995 158 NLDFWRQLWRVIER-------------SDVIVQIVDARN-PLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY- 222 (595)
Q Consensus 158 n~e~~rql~~vie~-------------sDvVl~VvDAR~-Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~- 222 (595)
-..+..|....+.. +|++++++|... ++...+..+ ++.+..++|+|+|+||+|+++..+...
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~---l~~l~~~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF---MKRLHEKVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHH---HHHHTTTSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHH---HHHHhccCCEEEEEeccCCCCHHHHHHH
Confidence 11112222333333 788888886543 444333333 333444789999999999998766543
Q ss_pred ---HHHHHhhCCCeEEEEecccCCC
Q psy9995 223 ---WTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 223 ---w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+.+.+...+++++.+||.++.+
T Consensus 166 ~~~i~~~l~~~~i~v~~~sa~~~~~ 190 (274)
T 3t5d_A 166 KKQIMKEIQEHKIKIYEFPETDDEE 190 (274)
T ss_dssp HHHHHHHHHHTTCCCCCC-------
T ss_pred HHHHHHHHHHcCCeEEcCCCCCChh
Confidence 3344556688888899877655
No 139
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=90.00 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=81.4
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHH-H------------Hhhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMER-D------------EFLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVI 169 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er-~------------~f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vi 169 (595)
..-.+-|-..|+.|||++.+.|...+- . ....+. ...+.|.||+|... + . ......+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~---~---~~~~~~~ 98 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER--F---R---SIAKSYF 98 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTT--C---H---HHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcc--h---h---hhHHHHH
Confidence 445677889999999999999975431 1 011222 24577999999532 1 1 1233467
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--------HHHHHHHHhhCCCeEEEE
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--------RCYWTKYFNSVNVAVAFF 237 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--------~~~w~~~~~~~gi~vi~~ 237 (595)
..+|++|+|+|+.++.++.. +..++..+ ..+.|+|||+||+|+.+... ...-..+....+..++.+
T Consensus 99 ~~~d~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 176 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLN--IREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCET 176 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHT--HHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEEC
T ss_pred hhCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEe
Confidence 88999999999988765432 33333322 24689999999999963210 111122233447889999
Q ss_pred ecccCCC
Q psy9995 238 SATNIYD 244 (595)
Q Consensus 238 SA~~~~~ 244 (595)
||+++.+
T Consensus 177 SA~~g~g 183 (199)
T 2p5s_A 177 SAKDGSN 183 (199)
T ss_dssp CTTTCTT
T ss_pred eCCCCCC
Confidence 9998866
No 140
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.39 E-value=1.3e-07 Score=88.12 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=78.8
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-|-..|+.|||++.+.|....-. ....+.+. .+.+.||+|... +.. ++ ...+..+|
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~---~~---~~~~~~~d 91 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE--FSA---MR---EQYMRTGD 91 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG--GCS---SH---HHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh--hHH---HH---HHHHhcCC
Confidence 4567788999999999998854211 11123333 345699999532 111 12 23577899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCC-----HHHHHHHHHHHhhCCCeEEEEecc-cC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLT-----RKQRCYWTKYFNSVNVAVAFFSAT-NI 242 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~-----~~~~~~w~~~~~~~gi~vi~~SA~-~~ 242 (595)
++++|+|+.++.++.. +..++..+ ..+.|+|+|+||+|+.. .++...|.+ ..+.+++.+||+ ++
T Consensus 92 ~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEH--VDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT---KYNIPYIETSAKDPP 166 (183)
T ss_dssp EEEEEEETTCHHHHHT--HHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH---HHTCCEEEEBCSSSC
T ss_pred EEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH---HhCCeEEEeccCCCC
Confidence 9999999988754422 22332222 35679999999999865 233334433 346889999998 66
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 167 ~~ 168 (183)
T 3kkq_A 167 LN 168 (183)
T ss_dssp BS
T ss_pred CC
Confidence 54
No 141
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.38 E-value=2.5e-07 Score=87.20 Aligned_cols=130 Identities=10% Similarity=-0.006 Sum_probs=80.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH------------hh--hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE------------FL--QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~------------f~--~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.|||++.+.|....-.. .. ......+.|.||+|.... ..+++ ..+..+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~---~~~~~~ 80 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF-----PAMQR---LSISKG 80 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC-----HHHHH---HHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh-----HHHHH---HhhccC
Confidence 356677889999999999998632110 00 112335678999995321 12222 356789
Q ss_pred CeEEEEEeCCCCCCCCch-HHHHHHHHhC---CCCcEEEEEeCCCCCCHHH-HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCE-DLERYVKEVS---PHKRNMILLNKADLLTRKQ-RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~-~Le~~lk~v~---~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++... .+...+..+. .+.|+|||+||+|+.+... ......+....++.++.+||+++.+
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYN 157 (199)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 999999999877554321 1222233221 3579999999999975321 1122223334477899999988765
No 142
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.38 E-value=9.7e-08 Score=89.67 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=78.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..++.||||+.+.|....-. ....+.+. .+.|+||+|... +.......+..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--------YSAMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHhhCcC
Confidence 45667788999999999999865311 11223333 367899999431 111223467889
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHH-HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRK-QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~-~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++++|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+.. ......++....+++++.+||+++.+
T Consensus 94 d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 94 EGFLCVFAINNSKSFA--DINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQG 169 (190)
T ss_dssp SEEEEEEETTCHHHHH--HHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999999998775432 233333322 2368999999999997521 11222233344477899999998866
No 143
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.38 E-value=6.9e-08 Score=90.78 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=78.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
.+.|-..|+.|||++.+.|...+-. ....+.+..+.+.||+|...-... ++ ..+..+|++|+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-----~~---~~~~~~d~ii~ 95 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY-----WR---CYFSDTDAVIY 95 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC-----CS---SSSTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH-----HH---HHhhcCCEEEE
Confidence 4455556667777776666432211 123456778899999996421110 11 24578999999
Q ss_pred EEeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHH-----hhCCCeEEEEecccCCC
Q psy9995 178 IVDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYF-----NSVNVAVAFFSATNIYD 244 (595)
Q Consensus 178 VvDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~-----~~~gi~vi~~SA~~~~~ 244 (595)
|+|+.+|.++. .+..++..+ . .+.|+++|+||+|+.+......+.+.+ ...++.++.+||+++.+
T Consensus 96 v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (189)
T 2x77_A 96 VVDSTDRDRMG--VAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDG 170 (189)
T ss_dssp EEETTCCTTHH--HHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEeCCCHHHHH--HHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccC
Confidence 99999886542 223333322 1 368999999999997653333333332 22345788899988765
No 144
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.38 E-value=7.3e-08 Score=91.03 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=81.8
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|...+-. ....+.+ ..+.|.||+|... +.. .....+..+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~------~~~~~~~~~ 94 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES--FRS------ITRSYYRGA 94 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG--TSC------CCHHHHTTC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh--hhh------hHHHHhccC
Confidence 4667788999999999998864321 1122233 3667899999432 111 122357789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++. .+..++..+ ..+.|++||+||+|+.+..+ ......+....++.++.+||+++.+
T Consensus 95 d~ii~v~d~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 95 AGALLVYDITRRETFN--HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170 (191)
T ss_dssp SEEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred CEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999998775442 233343332 34789999999999964211 1222333344578899999998766
No 145
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.38 E-value=5.3e-08 Score=89.01 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=80.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+.|-..|+.|||++.+.|...+-. ....+.+ ..+.|.||+|... +. ......+..+|
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--~~------~~~~~~~~~~d 77 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER--FR------TITTAYYRGAM 77 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGG--TS------CCCHHHHTTEE
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh--hh------hhHHHHhccCC
Confidence 455678999999999999854311 1123444 3466789999532 11 11233578999
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH-HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK-QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~-~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.... ......++....+++++.+||+++.+
T Consensus 78 ~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (170)
T 1g16_A 78 GIILVYDITDERTFT--NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDN 151 (170)
T ss_dssp EEEEEEETTCHHHHH--THHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999998876532 233333322 2478999999999994321 11222333344578899999998866
No 146
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.38 E-value=6.4e-08 Score=93.73 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=82.6
Q ss_pred cccCCCCCCCCcCCCHHHHH-HHHHHH--------------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQ-AMERDE--------------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~-~~Er~~--------------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.+. +..... ...+.+..+.+.||+|... +. .++ ...+..+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~---~~~~~~~ 88 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK--FG---GLR---DGYYIQA 88 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG--TS---CCC---HHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH--Hh---HHH---HHHHhcC
Confidence 45667789999999999944 333321 1123345678899999532 11 111 2256789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYDD 245 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~~ 245 (595)
|++|+|+|+.++.++.. +..++..+ ..+.|+|||+||+|+.+.........+....++.++.+||+++.+.
T Consensus 89 ~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKN--VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp CEEEEEEETTCHHHHHT--HHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTT
T ss_pred CEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999998765432 23333322 3478999999999997643222222334445788999999998763
No 147
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.37 E-value=5.5e-08 Score=99.02 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=82.6
Q ss_pred cccCCCCCCCCcCCCHHHHHHHH-------------HHHhhhhcCeeeEEEeCCCccc-ChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAME-------------RDEFLQWRRELNLLQEEDGLVI-TPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~E-------------r~~f~~wrg~~~~L~DT~Gi~~-t~~ern~e~~rql~~vie~sD 173 (595)
.+.+-..||.||||++|.|.+.. ......+ +..+.++||||... .+......+++.... .+.+|
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~~d 82 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQRAD 82 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cCCCC
Confidence 35567899999999999998643 1122334 66788999999753 222222233333221 14799
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH----HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK----QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~----~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+||.|+|+.+.. +...+...+. ..+.|+|+|+||+|+.... ....|.+.+ |++++.+||+++.|
T Consensus 83 ~vi~V~D~t~~e--~~~~~~~~l~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g~~vi~~SA~~g~g 150 (272)
T 3b1v_A 83 SILNVVDATNLE--RNLYLTTQLI--ETGIPVTIALNMIDVLDGQGKKINVDKLSYHL---GVPVVATSALKQTG 150 (272)
T ss_dssp EEEEEEEGGGHH--HHHHHHHHHH--HTCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---TSCEEECBTTTTBS
T ss_pred EEEEEecCCchH--hHHHHHHHHH--hcCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---CCCEEEEEccCCCC
Confidence 999999997632 1222222333 2478999999999985432 233444433 78899999999876
No 148
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.37 E-value=1.7e-07 Score=89.44 Aligned_cols=127 Identities=11% Similarity=0.090 Sum_probs=81.9
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|...+-. ....+.+. .+.|.||+|... +.. .....+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~------~~~~~~~~~ 81 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER--FRT------ITSSYYRGS 81 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT--TTC------CCGGGGTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH--HHH------HHHHhccCC
Confidence 4556678899999999998764321 11223343 577899999532 110 112356789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++ ..+..++..+ ..+.|++||+||+|+.+... ......+....+++++.+||+++.+
T Consensus 82 d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 82 HGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157 (206)
T ss_dssp SEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999887643 2333344333 34688999999999976321 1222233345678899999998866
No 149
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.36 E-value=1.2e-07 Score=98.82 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=83.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH----------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIV 176 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl 176 (595)
-.+.|-..|+.|||++.+.|...+-. ....+.+..+.|.||+|.. .+. ......+..+|+||
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~--~~~------~~~~~~~~~ad~vi 237 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD--KIR------PLWRHYFQNTQGLI 237 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-------C------CSHHHHHTTEEEEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCH--hHH------HHHHHHhccCCEEE
Confidence 35788899999999999998754311 2244667788999999932 111 11234578899999
Q ss_pred EEEeCCCCCCCCchHHHHHHHHh-C----CCCcEEEEEeCCCCCCHHHHHHHHHHHhh-----CCCeEEEEecccCCC
Q psy9995 177 QIVDARNPLLFRCEDLERYVKEV-S----PHKRNMILLNKADLLTRKQRCYWTKYFNS-----VNVAVAFFSATNIYD 244 (595)
Q Consensus 177 ~VvDAR~Pl~~~~~~Le~~lk~v-~----~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-----~gi~vi~~SA~~~~~ 244 (595)
+|+|+.++.++. .+..++..+ . .+.|+|||+||+|+.+......+...+.. .+..++.+||+++.+
T Consensus 238 lV~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 238 FVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEETTCSSSHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEECCchHHHH--HHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 999998876542 222222222 1 36889999999999865444445444422 244688899988765
No 150
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.36 E-value=8e-08 Score=97.39 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=62.3
Q ss_pred eeeEEEeCCCcccCh-----hhhhHHHHHHHHHHHhhcCeEE-EEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCC
Q psy9995 140 ELNLLQEEDGLVITP-----YEKNLDFWRQLWRVIERSDVIV-QIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKA 212 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~-----~ern~e~~rql~~vie~sDvVl-~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~ 212 (595)
..+.|+||||+.... ......+...+...+..+|.+| +|+|+..++.... ...++..+ ..++|+|+|+||+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~~~~~~~~~~~~~i~V~NK~ 202 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--ALKIAKEVDPQGQRTIGVITKL 202 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HHHHHHHHCTTCSSEEEEEECG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH--HHHHHHHhCCCCCeEEEEEEcc
Confidence 578899999987532 1111233344456777777555 7999988765433 22333333 3468999999999
Q ss_pred CCCCHHH-HHHHHHH-HhhC--C-CeEEEEecccCCCC
Q psy9995 213 DLLTRKQ-RCYWTKY-FNSV--N-VAVAFFSATNIYDD 245 (595)
Q Consensus 213 DLl~~~~-~~~w~~~-~~~~--g-i~vi~~SA~~~~~~ 245 (595)
|+.+... ...+.+. +... + ..++.+||+++.+.
T Consensus 203 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 203 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp GGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred ccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence 9986543 2222211 1111 2 25677999988763
No 151
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.36 E-value=2.2e-07 Score=84.87 Aligned_cols=126 Identities=11% Similarity=-0.037 Sum_probs=71.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHh-----------hhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDEF-----------LQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~f-----------~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
+-|-..|+.|||++.+.|...+.... ..+. ...+.+.||+|... + ..++ ...+..+|++
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~---~~~~---~~~~~~~~~~ 76 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG--G---RWLP---GHCMAMGDAY 76 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC-----------------------CCEE
T ss_pred EEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc--c---hhhh---hhhhhhCCEE
Confidence 44567899999999999975443311 1122 23456789999432 1 1112 2356789999
Q ss_pred EEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 176 VQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 176 l~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++|+|+.++.++ ..+..++..+ ..+.|+++|+||+|+.+... ...-..+....+.+++.+||+++.+
T Consensus 77 i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (166)
T 3q72_A 77 VIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN 150 (166)
T ss_dssp EEEEETTCHHHH--HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBS
T ss_pred EEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCC
Confidence 999999887643 2233333322 24689999999999975321 1111223334578899999998876
No 152
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.36 E-value=2e-07 Score=101.62 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=82.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHH-----------------------------------HH---------HhhhhcCeeeE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAME-----------------------------------RD---------EFLQWRRELNL 143 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~E-----------------------------------r~---------~f~~wrg~~~~ 143 (595)
.+.|-..|+.||||+.+.|.... |+ ...++.+..+.
T Consensus 9 ~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~ 88 (458)
T 1f60_A 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVT 88 (458)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEE
Confidence 35566788888999888887541 11 01245667789
Q ss_pred EEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------CchHHHHHHHHhCCCC-cEEEEEeCCCCC
Q psy9995 144 LQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLF-------RCEDLERYVKEVSPHK-RNMILLNKADLL 215 (595)
Q Consensus 144 L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~-------~~~~Le~~lk~v~~~K-~~ILVlNK~DLl 215 (595)
|+||||.. .+.+.....+..+|++|+|+|+.++... ........+.. .+. ++|+|+||+|+.
T Consensus 89 iiDtPGh~--------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 89 VIDAPGHR--------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp EEECCCCT--------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred EEECCCcH--------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccc
Confidence 99999943 3445566678899999999999865321 11112222222 244 489999999998
Q ss_pred C--HHHH----HHHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 216 T--RKQR----CYWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 216 ~--~~~~----~~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
+ ++.. ..+.+++...+ ++++++||+++.+.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv 199 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 199 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCc
Confidence 3 3322 23334444444 57999999998774
No 153
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.36 E-value=3.2e-08 Score=93.59 Aligned_cols=131 Identities=13% Similarity=0.048 Sum_probs=82.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.-.+-|-..|+.|||++.+.|...+-. ....+.+ ..+.+.||+|... +. ......+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~------~~~~~~~~~ 94 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEE--YD------RLRPLSYAD 94 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG--GT------TTGGGGCTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHH--HH------HHhHhhccC
Confidence 345677888999999999998865421 0112223 3357899999432 11 111225678
Q ss_pred cCeEEEEEeCCCCCCCCc--hHHHHHHHHhCCCCcEEEEEeCCCCCCHH----HHHHHHHHHhhCCCe-EEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRC--EDLERYVKEVSPHKRNMILLNKADLLTRK----QRCYWTKYFNSVNVA-VAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~--~~Le~~lk~v~~~K~~ILVlNK~DLl~~~----~~~~w~~~~~~~gi~-vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++.. ..+...+.....+.|+|||+||+|+.+.. ......++....+.. ++.+||+++.+
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 999999999988765433 22333333334568999999999996421 112222333344666 89999998876
No 154
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.36 E-value=6.9e-08 Score=96.38 Aligned_cols=111 Identities=10% Similarity=0.067 Sum_probs=76.2
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH---------------HhhhhcCeeeEEEeCCCcccChhhhh---HHHHHHHHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD---------------EFLQWRRELNLLQEEDGLVITPYEKN---LDFWRQLWR 167 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~---------------~f~~wrg~~~~L~DT~Gi~~t~~ern---~e~~rql~~ 167 (595)
...+-|-..|+.||||+.|.|...... ....|.+..+.|+||||+........ ..+.+.++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 346778889999999999999865411 13467888899999999876433222 234556666
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCC---CCcEEEEEe-CCCCCCH
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKEVSP---HKRNMILLN-KADLLTR 217 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~---~K~~ILVlN-K~DLl~~ 217 (595)
.+..+|++|+|+|+.. +......+.+++..+.. .+|.|+|+| |+|+...
T Consensus 102 ~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred cCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 7888999999999975 33222334344443311 468888888 9999753
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.36 E-value=1.7e-06 Score=92.78 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=83.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHH-------HHHH-------hh--hh------------------c-----CeeeEEEeCC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAM-------ERDE-------FL--QW------------------R-----RELNLLQEED 148 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~-------Er~~-------f~--~w------------------r-----g~~~~L~DT~ 148 (595)
.+.|-..++.||||+.+.|.+. |++. |. .| . ...+.|+|||
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP 91 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 91 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECC
Confidence 3456778889999999998732 2221 10 01 0 1567899999
Q ss_pred CcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH----HHHH
Q psy9995 149 GLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPL-LFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ----RCYW 223 (595)
Q Consensus 149 Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl-~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----~~~w 223 (595)
|. ..+.+...+.+..+|++|+|+||.++. .....+....+..+ ..+++|+|+||+|+.+... .+.+
T Consensus 92 Gh--------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 92 GH--------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp SH--------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred Ch--------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 94 234556666778899999999999764 21111212223322 2467899999999998643 3345
Q ss_pred HHHHhh---CCCeEEEEecccCCC
Q psy9995 224 TKYFNS---VNVAVAFFSATNIYD 244 (595)
Q Consensus 224 ~~~~~~---~gi~vi~~SA~~~~~ 244 (595)
.+++.. .+++++++||+++.+
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~g 186 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGAN 186 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBS
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCC
Confidence 555554 356899999988765
No 156
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=1.6e-07 Score=89.07 Aligned_cols=124 Identities=13% Similarity=-0.062 Sum_probs=81.3
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH------------Hhhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.-.+-|-..|+.|||++.+.|...+-. ....+. ...+.|.||+|... ..++ ...+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------~~~~---~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED------TIQR---EGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC------CHHH---HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc------ccch---hhhhcc
Confidence 345667788899999999988765321 001222 34577899999754 1122 235778
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEeccc
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATN 241 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~ 241 (595)
+|++|+|+|+.++.++.. +..++..+ ..+.|+|||+||+|+.+. ++...+. ...++.++.+||++
T Consensus 99 ~d~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 99 GEGFVLVYDITDRGSFEE--VLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA---TELACAFYECSACT 173 (196)
T ss_dssp CSEEEEEEETTCHHHHHT--HHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH---HHHTSEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHH--HHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH---HHhCCeEEEECCCc
Confidence 999999999988765422 22222211 247899999999999653 3333333 34478899999998
Q ss_pred CC
Q psy9995 242 IY 243 (595)
Q Consensus 242 ~~ 243 (595)
+.
T Consensus 174 g~ 175 (196)
T 2atv_A 174 GE 175 (196)
T ss_dssp CT
T ss_pred CC
Confidence 86
No 157
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.35 E-value=1.6e-07 Score=90.47 Aligned_cols=128 Identities=14% Similarity=0.053 Sum_probs=81.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
-.+.|-..|+.|||++.+.|...+-. .+....+ ..+.|.||+|...-.. ++. ..+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~---~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV-----LKD---VYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC-----CCH---HHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch-----HHH---HHhh
Confidence 45667789999999999988743311 1111122 4578999999543111 111 2467
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
.+|++|+|+|+.++.++.. +..++..+ ..+.|+|||+||+|+.+..+. .....+....+..++.+||+++.+
T Consensus 84 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 84 GASGAILFFDVTSRITCQN--LARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp TCSEEEEEEETTCHHHHHT--HHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred cCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 8999999999998765432 33333322 345899999999999765321 222334455678999999999876
No 158
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.35 E-value=9.9e-07 Score=92.82 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=76.6
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH------------------------------------H----------------
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD------------------------------------E---------------- 133 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~------------------------------------~---------------- 133 (595)
...+.|-.+||.||||++|.|.+..+. .
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 356789999999999999999975321 0
Q ss_pred -------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEE
Q psy9995 134 -------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNM 206 (595)
Q Consensus 134 -------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~I 206 (595)
.+.+.+..+.|+||+|+.... ..+.+.+|++++|+|+..+... ..+...+ ...+.+
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-----------~~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~i 216 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-----------FAVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMADL 216 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-----------HHHHTTCSEEEEEECCC------------------CCSCSE
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-----------hhHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCCE
Confidence 123567778999999976331 1246799999999999765321 1121111 246789
Q ss_pred EEEeCCCCCCHHH----HHHHHHHHhh-------CCCeEEEEecccCCC
Q psy9995 207 ILLNKADLLTRKQ----RCYWTKYFNS-------VNVAVAFFSATNIYD 244 (595)
Q Consensus 207 LVlNK~DLl~~~~----~~~w~~~~~~-------~gi~vi~~SA~~~~~ 244 (595)
+|+||+|+.+... ...+...+.. .+.+++++||+++.+
T Consensus 217 vVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~G 265 (349)
T 2www_A 217 VAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEG 265 (349)
T ss_dssp EEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTT
T ss_pred EEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCC
Confidence 9999999986532 2223322221 135788999988765
No 159
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.35 E-value=4.6e-08 Score=106.90 Aligned_cols=58 Identities=33% Similarity=0.500 Sum_probs=44.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEc-CCceEEEeCCCCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFV-DDELLLCDCPGLVM 379 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~-~~~~~liDtPGl~~ 379 (595)
.++|++||.||||||||+|+|++.....++..||+|+++. .+.+ +..+.++||||+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 4789999999999999999999988777999999999974 3444 45689999999853
No 160
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.35 E-value=1.4e-07 Score=95.62 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=29.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-----EecCCCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-----SVSATPG 355 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-----sVs~tPG 355 (595)
...+|++||.||||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4579999999999999999999987754 4566676
No 161
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.35 E-value=9e-08 Score=101.89 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=75.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
.+.|-.+||+||||++|.|.+..-. ....+.+..+.|+||||++....+- ....+++...++++|+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~-~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDG-RGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC------CHHHHHHHHHHHCSE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhh-hHHHHHHHHHHHhcCc
Confidence 4678899999999999999975421 2345678889999999998764432 2235778889999999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHhC---CCCcEEEEEeCCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEVS---PHKRNMILLNKADL 214 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v~---~~K~~ILVlNK~DL 214 (595)
|++|+|+.+|+.. ...++..+..+. ..+|.++++||+|.
T Consensus 153 il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 9999999988642 122333333221 35788999999995
No 162
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.35 E-value=5.5e-08 Score=88.71 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=81.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.||||+.+.|....-. ....+.+ ..+.+.||+|...- . ......+..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~------~~~~~~~~~~ 78 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF--D------AITKAYYRGA 78 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT--T------CCCHHHHTTC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH--H------HHHHHHhcCC
Confidence 4556678999999999998864321 0111222 35678899994321 1 1122357789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++++|+|+.++.++. .+..++..+ ..+.|+++|+||+|+.+..+ .....++....+++++.+||+++.+
T Consensus 79 d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (168)
T 1z2a_A 79 QACVLVFSTTDRESFE--AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153 (168)
T ss_dssp CEEEEEEETTCHHHHH--THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 9999999998875432 233333322 24789999999999975321 2223334445578999999998866
No 163
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.35 E-value=1.8e-07 Score=100.14 Aligned_cols=58 Identities=38% Similarity=0.443 Sum_probs=33.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc------------------CCceEEEeCCCCccC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV------------------DDELLLCDCPGLVMP 380 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~------------------~~~~~liDtPGl~~p 380 (595)
.++|++||.||||||||+|+|++.. +.+++.|++|.+... +.+ +..+.++||||+...
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4789999999999999999999876 589999999987543 332 234899999999853
No 164
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.34 E-value=7.1e-08 Score=88.34 Aligned_cols=127 Identities=15% Similarity=0.027 Sum_probs=79.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|....-. ....+.+. .+.+.||+|... + .......+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~------~~~~~~~~~~~ 79 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER--F------HALGPIYYRDS 79 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------------CCSSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHh--h------hhhHHHHhccC
Confidence 4556678999999999998865311 11223333 455779999421 1 11112246789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++++|+|+.++.++ ..+..++..+ ..+.|+++|+||+|+.+.. ......++....+.+++.+||+++.+
T Consensus 80 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 80 NGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 155 (170)
T ss_dssp SEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred CEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 999999999876543 2333443332 2467899999999996531 11223334445578899999998866
No 165
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.34 E-value=3.3e-07 Score=85.67 Aligned_cols=128 Identities=20% Similarity=0.140 Sum_probs=81.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH-------------HHhhhhcCeeeEEEeCCCcccCh-hhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER-------------DEFLQWRRELNLLQEEDGLVITP-YEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er-------------~~f~~wrg~~~~L~DT~Gi~~t~-~ern~e~~rql~~vie~sD 173 (595)
.+.+-..++.||||+.+.|..... .....+.+..+.+.||+|...-. ......+++...+ ...+|
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NEKPD 87 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-HHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-ccCCC
Confidence 456778899999999999986421 12345667788999999975421 1111222333221 14699
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCHH----HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTRK----QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~~----~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.+. ..+..++..+ ..+.|+|+|+||+|+.... ....|.+. .+..++.+||+++.+
T Consensus 88 ~~i~v~d~~~~-----~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 88 LVVNIVDATAL-----ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKI---LGVKVVPLSAAKKMG 155 (188)
T ss_dssp EEEEEEEGGGH-----HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHH---HTSCEEECBGGGTBS
T ss_pred EEEEEecchhH-----HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHH---hCCCeEEEEecCCCC
Confidence 99999998642 2223333322 3578999999999985432 23334333 367899999988765
No 166
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=2.2e-07 Score=89.07 Aligned_cols=130 Identities=14% Similarity=-0.019 Sum_probs=79.9
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.|||++.+.|...+.. ....+.+ ..+.|.||+|...-.. ++ ...+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~---~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-----LR---PLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-----TG---GGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-----HH---HhhcCCC
Confidence 34566778899999999998864321 0112333 3567889999542111 11 1246789
Q ss_pred CeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHH--------------HHHhhCCC-eEE
Q psy9995 173 DVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQRCYWT--------------KYFNSVNV-AVA 235 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~--------------~~~~~~gi-~vi 235 (595)
|++|+|+|+.++.++... .+...+.....+.|+++|+||+|+.+......+. .+....+. .++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL 177 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence 999999999876543221 2233333333578999999999997653322211 12223344 788
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 178 ~~SA~~g~g 186 (207)
T 2fv8_A 178 ECSAKTKEG 186 (207)
T ss_dssp ECCTTTCTT
T ss_pred EeeCCCCCC
Confidence 899988765
No 167
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.34 E-value=2.2e-07 Score=85.06 Aligned_cols=127 Identities=9% Similarity=-0.005 Sum_probs=76.7
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
+-|-..|+.|||++.+.|...... ....+.+ ..+.+.||+|...... .++. ..+..+|
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~---~~~~~~d 77 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG----WLQD---HCLQTGD 77 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC------------C---HHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch----hhhh---hhhccCC
Confidence 446678999999999999632221 1112333 3456789999642110 0111 2466799
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---C--CCCcEEEEEeCCCCCCHH--HHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---S--PHKRNMILLNKADLLTRK--QRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~--~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
++++|+|+.++.++.. +..++..+ . .+.|+++|+||+|+.+.. .......+....+.+++.+||+++.+
T Consensus 78 ~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T 3q85_A 78 AFLIVFSVTDRRSFSK--VPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 153 (169)
T ss_dssp EEEEEEETTCHHHHHT--HHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred EEEEEEECCChHHHHH--HHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCC
Confidence 9999999988754422 33333322 1 368999999999996321 11222333445578999999998866
No 168
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.33 E-value=3.1e-07 Score=83.83 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=35.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.....+++++|+|..... .++ -.+.++||||..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~ 60 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQD 60 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCc
Confidence 37899999999999999999998887788899999886433 332 256899999975
No 169
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.33 E-value=3.6e-07 Score=86.27 Aligned_cols=120 Identities=10% Similarity=0.060 Sum_probs=80.2
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-----------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-----------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-----------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
-.+.|-..|+.|||++.+.+....-. ....+.+. .+.+.||+|... +. .+..+|
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~-----------~~~~~~ 87 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPE--LQ-----------FAAWVD 87 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCC--HH-----------HHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChh--hh-----------eecCCC
Confidence 45667788999999999988765311 12334453 345689999532 11 567799
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHh---C--CCCcEEEEEeCCCCC-------CHHHHHHHHHHHhhCC-CeEEEEecc
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEV---S--PHKRNMILLNKADLL-------TRKQRCYWTKYFNSVN-VAVAFFSAT 240 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v---~--~~K~~ILVlNK~DLl-------~~~~~~~w~~~~~~~g-i~vi~~SA~ 240 (595)
++++|+|+.++.++.. +..++..+ . .+.|+|||.||+|+. +.++...|. ...+ ..++.+||+
T Consensus 88 ~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~---~~~~~~~~~e~Sa~ 162 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQT--VYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS---TDLKRCTYYETCAT 162 (184)
T ss_dssp EEEEEEETTCHHHHHH--HHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH---HHTTTCEEEEEBTT
T ss_pred EEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH---HHcCCCeEEEecCC
Confidence 9999999998765432 33444433 1 357899999999993 334444444 3444 788999999
Q ss_pred cCCC
Q psy9995 241 NIYD 244 (595)
Q Consensus 241 ~~~~ 244 (595)
++.+
T Consensus 163 ~~~g 166 (184)
T 3ihw_A 163 YGLN 166 (184)
T ss_dssp TTBT
T ss_pred CCCC
Confidence 8876
No 170
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.33 E-value=2.4e-07 Score=85.92 Aligned_cols=130 Identities=13% Similarity=-0.026 Sum_probs=76.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHH---------HHh---hhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMER---------DEF---LQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er---------~~f---~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+.|-..|+.|||++.+.+....- ..+ ..+.+ ..+.+.||+|... +. .++ ...+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~---~~~~~~~ 80 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED--YN---RLR---PLSYRGA 80 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CT--TT---TTG---GGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh--hh---hhH---HhhccCC
Confidence 4456667888888888888764320 001 11222 3345999999532 11 111 2356789
Q ss_pred CeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHHH------------HHHHHHHhhCCC-eEEEE
Q psy9995 173 DVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQR------------CYWTKYFNSVNV-AVAFF 237 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~------------~~w~~~~~~~gi-~vi~~ 237 (595)
|++++|+|+.++.++... .+...+.....+.|+++|+||+|+.+.... ....++....+. .++.+
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999887654321 122333332347899999999999654321 122223333465 88999
Q ss_pred ecccCCC
Q psy9995 238 SATNIYD 244 (595)
Q Consensus 238 SA~~~~~ 244 (595)
||+++.+
T Consensus 161 Sa~~~~g 167 (182)
T 3bwd_D 161 SSKSQEN 167 (182)
T ss_dssp CTTTCTT
T ss_pred ECCCCCC
Confidence 9988765
No 171
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.33 E-value=2.1e-07 Score=88.80 Aligned_cols=130 Identities=15% Similarity=0.043 Sum_probs=79.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|... +. .+++ ..+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~---~~~~---~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED--YD---RLRP---LSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGG--GT---TTGG---GGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchh--HH---HHHH---HhcCCC
Confidence 34556667888888888887754311 1112333 3567889999532 11 1111 256789
Q ss_pred CeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH--------------HHHHHHhhCCC-eEE
Q psy9995 173 DVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQRC--------------YWTKYFNSVNV-AVA 235 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~--------------~w~~~~~~~gi-~vi 235 (595)
|++|+|+|+.++.++... .+...+.....+.|++||+||+|+.+..... ...++....+. .++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 999999999877544321 2333333333478999999999998653221 12233334455 788
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 178 ~~SA~~g~g 186 (201)
T 2gco_A 178 ECSAKTKEG 186 (201)
T ss_dssp ECCTTTCTT
T ss_pred EeeCCCCCC
Confidence 899988765
No 172
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.33 E-value=4.2e-08 Score=106.08 Aligned_cols=133 Identities=17% Similarity=0.095 Sum_probs=83.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCe-eeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRE-LNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~-~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+.|-..++.||||+.|.|...+.. ...++.+. .+.|+||||+....... ....+.....+..
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-RLRVEKARRVFYR 113 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-CCCHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh-HHHHHHHHHHHhc
Confidence 34556667888888888887755432 11233333 78899999986532111 1123446678889
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHH-hhCCCeEEEEecccCCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYF-NSVNVAVAFFSATNIYDD 245 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~-~~~gi~vi~~SA~~~~~~ 245 (595)
+|++|+|+|+ ........+..++.+ .+.|+|+|+||+|+.+.... ...+.+ ...+.+++.+||+++.+.
T Consensus 114 aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 114 ADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp CSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred CCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCH
Confidence 9999999998 222222333444443 47899999999999865433 223333 234778899999998763
No 173
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.7e-07 Score=91.09 Aligned_cols=128 Identities=11% Similarity=0.035 Sum_probs=80.7
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.||+++.+.|...+-. ....+.+ ..+.|.||+|... +. .++ ...+..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~---~~~~~~ 85 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER--YR---AIT---SAYYRG 85 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTT--TT---CCC---GGGTTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccc--hh---hhH---HHHhcc
Confidence 45677789999999999999864321 1122344 4678999999532 11 011 234678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++. .+..++..+ ..+.|+|||+||+|+....+ ......+....++.++.+||+++.+
T Consensus 86 ~d~vilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 162 (223)
T 3cpj_B 86 AVGALIVYDISKSSSYE--NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162 (223)
T ss_dssp CCEEEEEEC-CCHHHHH--HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCC
T ss_pred CCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998876542 233444333 34678999999999965311 1222334445678899999988765
No 174
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.32 E-value=2.2e-07 Score=90.07 Aligned_cols=129 Identities=18% Similarity=0.110 Sum_probs=83.0
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
..-.+.|-..|++|||++.+.|...+-. .........+.|.||+|... +. .+++ ..+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~---~~~~---~~~~ 97 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY--YD---NVRP---LCYS 97 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGG--GT---TTGG---GGCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHh--HH---HHHH---HHcC
Confidence 3456778889999999999998765321 01122334567889999532 11 1111 2467
Q ss_pred hcCeEEEEEeCCCCCCCCc--hHHHHHHHHhCCCCcEEEEEeCCCCCC-----------------HHHHHHHHHHHhhCC
Q psy9995 171 RSDVIVQIVDARNPLLFRC--EDLERYVKEVSPHKRNMILLNKADLLT-----------------RKQRCYWTKYFNSVN 231 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~--~~Le~~lk~v~~~K~~ILVlNK~DLl~-----------------~~~~~~w~~~~~~~g 231 (595)
.+|++|+|+|+.++.++.. ..+...+.....+.|+|||.||+||.+ .++...|.. ..+
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~ 174 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK---QLG 174 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH---HHT
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHH---HcC
Confidence 8999999999998765433 222333333345789999999999954 233344443 346
Q ss_pred C-eEEEEecccCCC
Q psy9995 232 V-AVAFFSATNIYD 244 (595)
Q Consensus 232 i-~vi~~SA~~~~~ 244 (595)
. .++.+||+++.+
T Consensus 175 ~~~~~e~SA~~g~g 188 (214)
T 3q3j_B 175 AEIYLEGSAFTSEK 188 (214)
T ss_dssp CSEEEECCTTTCHH
T ss_pred CCEEEEeccCCCcc
Confidence 7 889999988753
No 175
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.32 E-value=1.6e-07 Score=90.13 Aligned_cols=131 Identities=13% Similarity=-0.006 Sum_probs=80.5
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.-.+-|-..|+.|||++.+.+....-. ....+.+.. +.+.||+|... +. .++ ...+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~---~~~---~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED--YD---RLR---PLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG--GT---TTG---GGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchh--hH---HHH---HHHhcc
Confidence 345667778888999988888753211 111233434 44899999632 11 111 125678
Q ss_pred cCeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH--------------HHHHHHhhCCC-eE
Q psy9995 172 SDVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQRC--------------YWTKYFNSVNV-AV 234 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~--------------~w~~~~~~~gi-~v 234 (595)
+|++|+|+|+.++.++... .+...+.....+.|+|||+||+|+.+..... ....+....+. ++
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 9999999999987654332 2233333334578999999999997643311 22223334454 58
Q ss_pred EEEecccCCC
Q psy9995 235 AFFSATNIYD 244 (595)
Q Consensus 235 i~~SA~~~~~ 244 (595)
+.+||+++.+
T Consensus 182 ~~~SA~~g~g 191 (204)
T 4gzl_A 182 LECSALTQRG 191 (204)
T ss_dssp EECCTTTCTT
T ss_pred EEeeCCCCCC
Confidence 8899988765
No 176
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.32 E-value=1.8e-07 Score=86.39 Aligned_cols=127 Identities=16% Similarity=0.043 Sum_probs=78.1
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhhc---CeeeEEEeCCCcccChhhhhHHHHHHHHHHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWR---RELNLLQEEDGLVITPYEKNLDFWRQLWRVI 169 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wr---g~~~~L~DT~Gi~~t~~ern~e~~rql~~vi 169 (595)
.-.+-|-..|+.|||++.+.|...+-. ....+. ...+.|.||+|... +.......+
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 79 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER--------FQSLGVAFY 79 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------CCS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChH--------hhhhhHHHh
Confidence 345667788999999999998865421 112233 23567899999321 111122356
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHh----C----CCCcEEEEEeCCCCCCH------HHHHHHHHHHhhCCCeEE
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEV----S----PHKRNMILLNKADLLTR------KQRCYWTKYFNSVNVAVA 235 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~----~~K~~ILVlNK~DLl~~------~~~~~w~~~~~~~gi~vi 235 (595)
..+|++|+|+|+.++.++.. +..++..+ . .+.|++||+||+|+... ++...|... ..+..++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~--~~~~~~~ 155 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFEN--IKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS--LGDIPLF 155 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHT--HHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH--TTSCCEE
T ss_pred hcCCEEEEEEECCChHHHHH--HHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh--cCCCeEE
Confidence 78999999999988764322 23333222 1 56799999999999543 233333321 2367899
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 156 ~~Sa~~~~g 164 (182)
T 1ky3_A 156 LTSAKNAIN 164 (182)
T ss_dssp EEBTTTTBS
T ss_pred EEecCCCCC
Confidence 999998866
No 177
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.32 E-value=2.3e-07 Score=88.16 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=81.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+-|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|... +.. + ....+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~---~---~~~~~~~ 80 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER--FQS---L---GVAFYRG 80 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG--GSC---S---CCGGGTT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH--HHH---h---HHHHHhC
Confidence 45667788999999999999865421 0112222 4678999999532 111 0 1234678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----C----CCCcEEEEEeCCCCCCHH-HHHHHHHHHh-hCCCeEEEEeccc
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----S----PHKRNMILLNKADLLTRK-QRCYWTKYFN-SVNVAVAFFSATN 241 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~----~~K~~ILVlNK~DLl~~~-~~~~w~~~~~-~~gi~vi~~SA~~ 241 (595)
+|++|+|+|+.++.++.. +..++..+ . .+.|++||+||+|+.... .......+.. ..++.++.+||++
T Consensus 81 ~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKT--LDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp CSEEEEEEETTCHHHHHT--HHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred CcEEEEEEECCCHHHHHH--HHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 999999999988765422 23333222 1 367999999999997432 1122233333 4467899999998
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 159 g~g 161 (207)
T 1vg8_A 159 AIN 161 (207)
T ss_dssp TBS
T ss_pred CCC
Confidence 876
No 178
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.32 E-value=1.9e-07 Score=86.11 Aligned_cols=127 Identities=14% Similarity=0.024 Sum_probs=80.3
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|....-. ....+.+ ..+.+.||+|... -.. .....+..+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----~~~---~~~~~~~~~ 80 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER-----FRS---LRTPFYRGS 80 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGG-----GHH---HHGGGGTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchh-----hhh---hHHHHHhcC
Confidence 4566778999999999999754311 1112334 3677899999421 111 122457789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----C----CCCcEEEEEeCCCCCCHH-HHHHHHHHHh-hCCCeEEEEecccC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----S----PHKRNMILLNKADLLTRK-QRCYWTKYFN-SVNVAVAFFSATNI 242 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~----~~K~~ILVlNK~DLl~~~-~~~~w~~~~~-~~gi~vi~~SA~~~ 242 (595)
|++++|+|+.++.++.. +..++..+ . .+.|+++|+||+|+.... ......++.. ..+..++.+||+++
T Consensus 81 ~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (177)
T 1wms_A 81 DCCLLTFSVDDSQSFQN--LSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDA 158 (177)
T ss_dssp SEEEEEEETTCHHHHHT--HHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHH--HHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 99999999988764322 22333222 1 567999999999996321 1122223333 34678999999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 159 ~g 160 (177)
T 1wms_A 159 TN 160 (177)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 179
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=1e-07 Score=91.76 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=82.5
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+.|-..|+.|||++.+.|....-. ....+.+ ..+.|.||+|.. +-. ......+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----~~~---~~~~~~~~~ 98 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE-----RFR---SITQSYYRS 98 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-----GGH---HHHGGGSTT
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH-----HHH---HHHHHHHhc
Confidence 45677888999999999998764321 1222444 356788999942 111 122345788
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|++|+|+|+.++.++.. +..++..+ ..+.|+|||+||+|+....+ ......+....++.++.+||+++.+
T Consensus 99 ~d~~i~v~D~~~~~s~~~--~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g 175 (201)
T 2ew1_A 99 ANALILTYDITCEESFRC--LPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175 (201)
T ss_dssp CSEEEEEEETTCHHHHHT--HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred CCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999988765422 33333322 34678999999999964311 1122223334478899999998876
No 180
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.31 E-value=9.4e-07 Score=95.56 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=66.1
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CchHHHHH---HHHhCCCCcEEE
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLF----RCEDLERY---VKEVSPHKRNMI 207 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~----~~~~Le~~---lk~v~~~K~~IL 207 (595)
.+|.+..+.|+||||... +.+.....+..+|++|+|+|+.+.... ......+. +.. ...+++|+
T Consensus 79 ~~~~~~~~~iiDtpG~~~--------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~~iiv 149 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRD--------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLDQLIV 149 (435)
T ss_dssp EECSSCEEEECCCSSSTT--------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCTTCEE
T ss_pred EecCCeEEEEEECCCcHH--------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEE
Confidence 456778899999999542 234455677899999999999885110 11122222 222 12346899
Q ss_pred EEeCCCCCC----HHH----HHHHHHHHhhCC-----CeEEEEecccCCCC
Q psy9995 208 LLNKADLLT----RKQ----RCYWTKYFNSVN-----VAVAFFSATNIYDD 245 (595)
Q Consensus 208 VlNK~DLl~----~~~----~~~w~~~~~~~g-----i~vi~~SA~~~~~~ 245 (595)
|+||+|+.+ ++. .....+++...+ ++++++||+++.+.
T Consensus 150 viNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v 200 (435)
T 1jny_A 150 AVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNI 200 (435)
T ss_dssp EEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTT
T ss_pred EEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccc
Confidence 999999987 221 233445555555 57899999988763
No 181
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.31 E-value=4.1e-07 Score=84.25 Aligned_cols=120 Identities=10% Similarity=0.027 Sum_probs=78.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-----------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-----------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-----------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
.+.|-..|++||+++.+.|...+-. ....+.+ ..+.+.||+|... ...+..+|+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------------~~~~~~~d~ 75 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-------------AKFSGWADA 75 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-------------HHHHHHCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-------------hHHHHhCCE
Confidence 3556677888888888888764321 1112333 3456789999543 235678999
Q ss_pred EEEEEeCCCCCCCCchHHHH---HHHHh----CCCCcEEEEEeCCCCC-------CHHHHHHHHHHHhhCCCeEEEEecc
Q psy9995 175 IVQIVDARNPLLFRCEDLER---YVKEV----SPHKRNMILLNKADLL-------TRKQRCYWTKYFNSVNVAVAFFSAT 240 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~---~lk~v----~~~K~~ILVlNK~DLl-------~~~~~~~w~~~~~~~gi~vi~~SA~ 240 (595)
+|+|+|+.+|.++. .+.. ++..+ ..+.|++||.||+|+. +.++...|...+ .+..++.+||+
T Consensus 76 ~ilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~--~~~~~~~~Sa~ 151 (178)
T 2iwr_A 76 VIFVFSLEDENSFQ--AVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM--KRCSYYETXAT 151 (178)
T ss_dssp EEEEEETTCHHHHH--HHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH--SSEEEEEEBTT
T ss_pred EEEEEECcCHHHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh--cCCeEEEEecc
Confidence 99999999876543 2333 33333 1467999999999993 334444444322 25688999999
Q ss_pred cCCC
Q psy9995 241 NIYD 244 (595)
Q Consensus 241 ~~~~ 244 (595)
++.+
T Consensus 152 ~~~~ 155 (178)
T 2iwr_A 152 YGLN 155 (178)
T ss_dssp TTBT
T ss_pred ccCC
Confidence 8766
No 182
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.31 E-value=1.4e-07 Score=90.05 Aligned_cols=126 Identities=16% Similarity=-0.020 Sum_probs=82.1
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.-.+-|-..|++|||++.+.|...+.. .........+.|.||+|....... ....+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--------PYSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC--------CGGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH--------HHHHHhc
Confidence 445777889999999999999875422 111234456689999995432111 1225678
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEeccc
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATN 241 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~ 241 (595)
+|++|+|+|+.++.++ ..+..++..+ ..+.|+|||+||+|+.+. .....|. ...+..++.+||++
T Consensus 96 ~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~~~Sa~~ 170 (201)
T 3oes_A 96 VHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA---ESWGATFMESSARE 170 (201)
T ss_dssp CCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH---HHHTCEEEECCTTC
T ss_pred CCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH---HHhCCeEEEEeCCC
Confidence 9999999999877543 2344444433 236799999999998643 2233333 34477899999988
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 171 ~~~ 173 (201)
T 3oes_A 171 NQL 173 (201)
T ss_dssp HHH
T ss_pred CCC
Confidence 755
No 183
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.31 E-value=2e-06 Score=96.79 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=61.8
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ 219 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~ 219 (595)
..+.|+||||... +.....+.+..+|.+|+|+|+.++...........+ ...+.|+|+|+||+|+.....
T Consensus 73 ~~inliDTPGh~d--------F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a--~~~~ipiIvviNKiDl~~a~~ 142 (600)
T 2ywe_A 73 YKLHLIDTPGHVD--------FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA--VEQDLVIIPVINKIDLPSADV 142 (600)
T ss_dssp EEEEEECCCCSGG--------GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH--HHTTCEEEEEEECTTSTTCCH
T ss_pred EEEEEEECCCcHh--------HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHH--HHCCCCEEEEEeccCccccCH
Confidence 5677999999653 223445568899999999999988654332222222 245789999999999975321
Q ss_pred HHHHHHHHh-hCCC---eEEEEecccCCC
Q psy9995 220 RCYWTKYFN-SVNV---AVAFFSATNIYD 244 (595)
Q Consensus 220 ~~~w~~~~~-~~gi---~vi~~SA~~~~~ 244 (595)
....+.+. ..+. +++++||+++.+
T Consensus 143 -~~v~~el~~~lg~~~~~vi~vSAktg~G 170 (600)
T 2ywe_A 143 -DRVKKQIEEVLGLDPEEAILASAKEGIG 170 (600)
T ss_dssp -HHHHHHHHHTSCCCGGGCEECBTTTTBS
T ss_pred -HHHHHHHHHhhCCCcccEEEEEeecCCC
Confidence 11122222 2244 489999998766
No 184
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.30 E-value=3.5e-07 Score=83.45 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=45.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++..- ..+.+++|.|.....+..+ ..+.++||||..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 48999999999999999999997652 3456778887776666654 357899999974
No 185
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.30 E-value=3e-06 Score=90.74 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=57.7
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPL-LFRCEDLERYVKEVSPHKRNMILLNKADLLTRK 218 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl-~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~ 218 (595)
..+.|+||||. ..+.+...+.+..+|++|+|+|+.++. .....+....+.. ...+++|+|+||+|+.+..
T Consensus 81 ~~i~iiDtPGh--------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 81 RRVSFVDSPGH--------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEEEEEECSSH--------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTSSCTT
T ss_pred cEEEEEECCCH--------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCCCCHH
Confidence 56789999994 233445555667789999999999875 2111111122232 2346899999999998653
Q ss_pred ----HHHHHHHHHhh---CCCeEEEEecccCCC
Q psy9995 219 ----QRCYWTKYFNS---VNVAVAFFSATNIYD 244 (595)
Q Consensus 219 ----~~~~w~~~~~~---~gi~vi~~SA~~~~~ 244 (595)
..+.+.+++.. .+.+++++||+++.+
T Consensus 152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g 184 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEAN 184 (408)
T ss_dssp TTTTHHHHHHHHHTTSTTTTCCEEEC------C
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCC
Confidence 23444555543 356899999988765
No 186
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.29 E-value=7.2e-07 Score=95.30 Aligned_cols=126 Identities=10% Similarity=0.051 Sum_probs=84.4
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHHH-----------------------------hhhhcCeeeEEEeCCCcccChhhhhH
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERDE-----------------------------FLQWRRELNLLQEEDGLVITPYEKNL 159 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~~-----------------------------f~~wrg~~~~L~DT~Gi~~t~~ern~ 159 (595)
+.|-..++.||||+.+.|.....+. ...+.+..+.|+||||..
T Consensus 6 I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~-------- 77 (397)
T 1d2e_A 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-------- 77 (397)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH--------
T ss_pred EEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH--------
Confidence 4556788999999999998753210 023455678899999953
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCCC-HHHH----HHHHHHHhhCC--
Q psy9995 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLLT-RKQR----CYWTKYFNSVN-- 231 (595)
Q Consensus 160 e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl~-~~~~----~~w~~~~~~~g-- 231 (595)
++.+.+...+..+|++|+|+|+.++...........+.. .+.| +|+|+||+|+.+ .+.. ....+++...+
T Consensus 78 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 78 DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 244556667889999999999998764333332333332 3567 689999999985 3221 23344555544
Q ss_pred ---CeEEEEecccCCC
Q psy9995 232 ---VAVAFFSATNIYD 244 (595)
Q Consensus 232 ---i~vi~~SA~~~~~ 244 (595)
++++++||+++.+
T Consensus 156 ~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 156 GEETPIIVGSALCALE 171 (397)
T ss_dssp TTTSCEEECCHHHHHT
T ss_pred cccCcEEEeehhhccc
Confidence 5789999988654
No 187
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.28 E-value=3.3e-07 Score=82.85 Aligned_cols=126 Identities=16% Similarity=0.077 Sum_probs=78.0
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-+-..|+.||||+.+.|....-. ....+.+ ..+.+.||+|.... ..+++ ..+..+|.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~-----~~~~~---~~~~~~~~ 77 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----SAMRD---QYMRTGEG 77 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC-----CHHHH---HHHHHCSE
T ss_pred EEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhh-----hHHHH---HhhccCCE
Confidence 345567889999999988754311 0111223 33578999995321 11222 35778999
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHH-HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 175 IVQIVDARNPLLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQ-RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~-~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+++|+|+.++.++ ..+..++..+ ..+.|+++|+||+|+.+... .....++....+++++.+||+++.+
T Consensus 78 ~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (166)
T 2ce2_X 78 FLCVFAINNTKSF--EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQG 151 (166)
T ss_dssp EEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTT
T ss_pred EEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 9999999876543 2233333322 23689999999999976321 1222233344578899999998766
No 188
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.27 E-value=8.6e-07 Score=90.64 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=25.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce-----eEecCCCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK-----VSVSATPG 355 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k-----vsVs~tPG 355 (595)
...+|+|||.||||||||||+|++... ..++..|+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~ 62 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPL 62 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CE
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeE
Confidence 457899999999999999999999775 44556663
No 189
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.26 E-value=4e-07 Score=97.45 Aligned_cols=59 Identities=29% Similarity=0.331 Sum_probs=48.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC------------------CceEEEeCCCCccC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD------------------DELLLCDCPGLVMP 380 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~------------------~~~~liDtPGl~~p 380 (595)
..+|++||.||||||||+|+|++...+.+++.|++|.+... +.++ ..+.++|+||+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 47899999999999999999999775589999999988543 4433 25799999999743
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.25 E-value=8.3e-07 Score=93.21 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=28.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-----EecCCCC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-----SVSATPG 355 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-----sVs~tPG 355 (595)
...+|++||.||||||||||+|++.... .++..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 3468999999999999999999997654 4556677
No 191
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.25 E-value=5.1e-07 Score=82.25 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=43.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.... ...+++|.+.....+.++. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 478999999999999999999976522 3445666666666666554 68899999964
No 192
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.25 E-value=3.5e-08 Score=120.40 Aligned_cols=134 Identities=23% Similarity=0.261 Sum_probs=95.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-+|||||.+|+|||||++.|++-. ....+-+++| |+.... ++++.+|.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~-----------------~p~~G~I~iD--G~di~~-------------i~~~~lR~ 1153 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY-----------------DTLGGEIFID--GSEIKT-------------LNPEHTRS 1153 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS-----------------CCSSSEEEET--TEETTT-------------BCHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhcCc-----------------cCCCCEEEEC--CEEhhh-------------CCHHHHHh
Confidence 479999999999999999999866 4456788999 887655 67889999
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCC--CCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDE--GEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYIL 472 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~--~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iL 472 (595)
++..|.+-..+++.++.+| .||.......+ ...+.+....++|+..+..+ +|...+|||.++...||++|
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence 9999888888999999998 58863211000 00011112234555544433 67788999999999999998
Q ss_pred HHHHhCCceeecCC-CCCCh
Q psy9995 473 KDFVNGHLLYCQAP-PGVPQ 491 (595)
Q Consensus 473 kD~~~GKL~~~~~P-P~~~~ 491 (595)
+ +-+++-.--| -..|+
T Consensus 1234 r---~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1234 R---NPKILLLDEATSALDT 1250 (1321)
T ss_dssp S---CCSEEEEESCCCSTTS
T ss_pred h---CCCEEEEeCccccCCH
Confidence 7 4677655433 33444
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.24 E-value=3e-06 Score=88.67 Aligned_cols=93 Identities=13% Similarity=0.043 Sum_probs=57.7
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCC
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADL 214 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DL 214 (595)
+.|.+..+.|+||+|+..... .++..+|++|+|+|+..+..... +..... +.|.++|+||+|+
T Consensus 144 ~~~~~~~i~liDTpG~~~~~~-----------~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~----~~p~ivv~NK~Dl 206 (341)
T 2p67_A 144 CEAAGYDVVIVETVGVGQSET-----------EVARMVDCFISLQIAGGGDDLQG--IKKGLM----EVADLIVINKDDG 206 (341)
T ss_dssp HHHTTCSEEEEEEECCTTHHH-----------HHHTTCSEEEEEECC------CC--CCHHHH----HHCSEEEECCCCT
T ss_pred hhccCCCEEEEeCCCccchHH-----------HHHHhCCEEEEEEeCCccHHHHH--HHHhhh----cccCEEEEECCCC
Confidence 348899999999999864221 13589999999999965432111 111111 3578999999999
Q ss_pred CCHHHHHHHHHHH----hhC-------CCeEEEEecccCCC
Q psy9995 215 LTRKQRCYWTKYF----NSV-------NVAVAFFSATNIYD 244 (595)
Q Consensus 215 l~~~~~~~w~~~~----~~~-------gi~vi~~SA~~~~~ 244 (595)
.+......+.+.+ ... ...++++||+++.+
T Consensus 207 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g 247 (341)
T 2p67_A 207 DNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRG 247 (341)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred CChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence 8764443332222 211 34678899988765
No 194
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.24 E-value=7.4e-08 Score=108.39 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHH-----------------------------------HH---------HhhhhcCeeeE
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAME-----------------------------------RD---------EFLQWRRELNL 143 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~E-----------------------------------r~---------~f~~wrg~~~~ 143 (595)
.+.|-..|+.||||+.+.|+... ++ ....|.+..+.
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~ 258 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYE 258 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEE
Confidence 46678999999999999996432 11 23445667888
Q ss_pred EEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCchHHHHHHHHhCCCCc-EEEEEeCCCCC
Q psy9995 144 LQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPL-------LFRCEDLERYVKEVSPHKR-NMILLNKADLL 215 (595)
Q Consensus 144 L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl-------~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl 215 (595)
|+||||... |..+ +...+..+|++|+|+|+..+. ..........+.. .+.| +|+|+||+|+.
T Consensus 259 iiDTPGh~~--f~~~------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 259 IGDAPGHRD--FISG------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLM 328 (592)
T ss_dssp CCEEESSSE--EEEE------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGG
T ss_pred EEECCChHH--HHHH------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccc
Confidence 999999653 2111 223467799999999998754 2222223333332 3454 88999999997
Q ss_pred C--HHHH----HHHHHHH-hhCCC-----eEEEEecccCCCC
Q psy9995 216 T--RKQR----CYWTKYF-NSVNV-----AVAFFSATNIYDD 245 (595)
Q Consensus 216 ~--~~~~----~~w~~~~-~~~gi-----~vi~~SA~~~~~~ 245 (595)
+ .+.. ..+..++ ...|+ +++++||+++.+.
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI 370 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNL 370 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSS
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccc
Confidence 6 3332 3344445 44454 6899999999874
No 195
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.24 E-value=5.4e-07 Score=85.41 Aligned_cols=129 Identities=9% Similarity=0.006 Sum_probs=81.0
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
..-.+-|-..|+.|||++.+.|...+-. ....+.+. .+.|.||+|...-.. +++ ..+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----~~~---~~~~ 90 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK-----LRP---LCYT 90 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS-----SGG---GGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH-----HhH---hhcC
Confidence 3456778889999999999999855421 01223343 455899999642111 122 2567
Q ss_pred hcCeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCH-----------------HHHHHHHHHHhhCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTR-----------------KQRCYWTKYFNSVN 231 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~-----------------~~~~~w~~~~~~~g 231 (595)
.+|++|+|+|+.++.++... .+...+.....+.|+|||+||+|+.+. ++...|. ...+
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~ 167 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA---EEIK 167 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH---HHHT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH---HhcC
Confidence 89999999999887654321 122223322357899999999999752 1222333 3335
Q ss_pred C-eEEEEecccCCC
Q psy9995 232 V-AVAFFSATNIYD 244 (595)
Q Consensus 232 i-~vi~~SA~~~~~ 244 (595)
. .++.+||+++.+
T Consensus 168 ~~~~~~~Sa~~g~g 181 (201)
T 2q3h_A 168 AASYIECSALTQKN 181 (201)
T ss_dssp CSEEEECCTTTCTT
T ss_pred CcEEEEEecCCCCC
Confidence 5 889999998876
No 196
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.24 E-value=9.1e-07 Score=93.93 Aligned_cols=123 Identities=9% Similarity=-0.021 Sum_probs=84.7
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEe
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVD 180 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvD 180 (595)
.+.|-..|+.||||+.+.|. ++. ...+|.+..+.|+||||... +++.+...+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--~~giTi~~~~~~~~~~~~~i~iiDtPGh~~--------f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--KKGTSSDITMYNNDKEGRNMVFVDAHSYPK--------TLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--EEEEESSSEEEEECSSSSEEEEEECTTTTT--------CHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--hCCEEEEeeEEEEecCCeEEEEEECCChHH--------HHHHHHHHHHHCCEEEEEEc
Confidence 67788899999999999998 322 24567788899999999642 34556667899999999999
Q ss_pred CCCCCCCCchHHHHHHHHhCCCCcE-EEEEe-CCCCCCHHHH----HHHHHHHhhC---CCeEEE--Eeccc---CCC
Q psy9995 181 ARNPLLFRCEDLERYVKEVSPHKRN-MILLN-KADLLTRKQR----CYWTKYFNSV---NVAVAF--FSATN---IYD 244 (595)
Q Consensus 181 AR~Pl~~~~~~Le~~lk~v~~~K~~-ILVlN-K~DLl~~~~~----~~w~~~~~~~---gi~vi~--~SA~~---~~~ 244 (595)
..............+.. .+.|. |+|+| |+|+ +.+.. .+..+++... .+++++ +||++ +.+
T Consensus 93 -~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 65443222222223332 35666 99999 9999 65432 2334444433 358899 99988 654
No 197
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.23 E-value=3.7e-07 Score=86.05 Aligned_cols=129 Identities=13% Similarity=-0.025 Sum_probs=78.4
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
.+-|-..++.||+++.+.|....-. ....+.+ ..+.+.||+|...-. .++ ...+..+|
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~---~~~~~~~d 91 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-----RLR---PLSYPMTD 91 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST-----TTG---GGGCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh-----HHH---HHhcCCCC
Confidence 4555667778888888777754210 0122333 456789999964211 111 12467899
Q ss_pred eEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHH--------------HHHHHHHHhhCCC-eEEE
Q psy9995 174 VIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQ--------------RCYWTKYFNSVNV-AVAF 236 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~--------------~~~w~~~~~~~gi-~vi~ 236 (595)
++|+|+|+.++.++... .+...+.....+.|++||+||+|+.+... .....++....+. .++.
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999887654321 12223333234789999999999976321 1112222333465 7899
Q ss_pred EecccCCC
Q psy9995 237 FSATNIYD 244 (595)
Q Consensus 237 ~SA~~~~~ 244 (595)
+||+++.+
T Consensus 172 ~Sa~~g~g 179 (194)
T 2atx_A 172 CSALTQKG 179 (194)
T ss_dssp CCTTTCTT
T ss_pred eeCCCCCC
Confidence 99998866
No 198
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.23 E-value=6.8e-07 Score=92.13 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=83.2
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------Hhhhh-cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQW-RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~w-rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+.+-..|+.|||++.+.|...... ....+ ++..+.+.||||... + ....+.......+..+
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~--~-~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV--F-MENYFTKQKDHIFQMV 81 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHH--H-HHHHHTTTHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHH--H-hhhhhhhHHHHHhccC
Confidence 3556688999999999998765221 11111 356678999999531 1 1111112233466899
Q ss_pred CeEEEEEeCCCCCCCCch-HHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHH--------HHHHHHhhCC---CeEEEE
Q psy9995 173 DVIVQIVDARNPLLFRCE-DLERYVKEV---SPHKRNMILLNKADLLTRKQRC--------YWTKYFNSVN---VAVAFF 237 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~-~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~--------~w~~~~~~~g---i~vi~~ 237 (595)
|++|+|+|+.++.++.+. .+..++..+ ..+.|++||+||+|+...+.+. ...++....| ..++.+
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 999999999988765432 122223322 4578999999999999844332 2233444455 688889
Q ss_pred eccc
Q psy9995 238 SATN 241 (595)
Q Consensus 238 SA~~ 241 (595)
||++
T Consensus 162 Sa~~ 165 (307)
T 3r7w_A 162 SIWD 165 (307)
T ss_dssp CTTS
T ss_pred eecC
Confidence 9987
No 199
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.23 E-value=2.5e-07 Score=87.46 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=81.2
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH---------H---hh--hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD---------E---FL--QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE 170 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~---------~---f~--~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie 170 (595)
..-.+.|-..|+.||+++.+.|....-. . .. ......+.|.||+|... +.. +...+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~-------~~~~~~ 90 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT--PRN-------CERYLN 90 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCC-------THHHHT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCc--chh-------HHHHHh
Confidence 3456778899999999999999865411 0 01 12234567899999532 111 123677
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHh-------CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEe
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEV-------SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFS 238 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-------~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~S 238 (595)
.+|++|+|+|+.++.++. .+..++..+ ..+.|+|||+||+|+... ++...|. ...++.++.+|
T Consensus 91 ~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~S 165 (187)
T 3c5c_A 91 WAHAFLVVYSVDSRQSFD--SSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA---GRFGCLFFEVS 165 (187)
T ss_dssp TCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH---HHHTCEEEECC
T ss_pred hCCEEEEEEECCCHHHHH--HHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH---HHcCCcEEEEe
Confidence 899999999998775542 233333332 157899999999999542 3333443 34478899999
Q ss_pred c-ccCCC
Q psy9995 239 A-TNIYD 244 (595)
Q Consensus 239 A-~~~~~ 244 (595)
| +++.+
T Consensus 166 a~~~g~g 172 (187)
T 3c5c_A 166 ACLDFEH 172 (187)
T ss_dssp SSSCSHH
T ss_pred ecCcccc
Confidence 9 77654
No 200
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.22 E-value=2.4e-07 Score=103.00 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=83.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------Hhhhh-cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQW-RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~w-rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+.|-..|+.||||+.+.|...... ....| .+..+.|+||||... |.. ...+.+..+
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~--f~~------~~~~~~~~a 76 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA--FSA------MRARGTQVT 76 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC--TTT------SBBSSSBSB
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH--HHH------HHHHHHccC
Confidence 45667778999999999999877654 12234 466788999999532 111 112346779
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH--HH-HHHHHH---HhhC--CCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK--QR-CYWTKY---FNSV--NVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~--~~-~~w~~~---~~~~--gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++...........+. ..+.|+|+|+||+|+.+.. .. .....+ .... .++++++||+++.+
T Consensus 77 D~vILVVDa~dg~~~qt~e~l~~~~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 77 DIVILVVAADDGVMKQTVESIQHAK--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGEN 154 (537)
T ss_dssp SSCEEECBSSSCCCHHHHHHHHHHH--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred CEEEEEEECCCCccHHHHHHHHHHH--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999999999877654433334444 4578999999999996421 11 111111 1111 23678899999876
No 201
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.22 E-value=8.1e-07 Score=85.19 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=65.5
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH----------Hhhhhc---CeeeEEEeCCCcccChhhhhHHHHHHHH-HHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQWR---RELNLLQEEDGLVITPYEKNLDFWRQLW-RVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~wr---g~~~~L~DT~Gi~~t~~ern~e~~rql~-~vie~ 171 (595)
...+-|-..|+.|||++.+.|...+-. ....+. +..+.+.||||.. .+...++ ..+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------~~~~~~~~~~~~~ 78 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE--------SLRFQLLDRFKSS 78 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH--------HHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCCh--------hHHHHHHHHHHhh
Confidence 345667788999999999998865421 113344 4568899999963 1122122 34789
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh-------CCCCcEEEEEeCCCCCCH
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV-------SPHKRNMILLNKADLLTR 217 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-------~~~K~~ILVlNK~DLl~~ 217 (595)
+|++|+|+|+.++... ...+..++..+ ..+.|++||+||+||.+.
T Consensus 79 ~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 79 ARAVVFVVDSAAFQRE-VKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCcCHH-HHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 9999999999763211 11222222211 346899999999999764
No 202
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.21 E-value=6e-07 Score=84.41 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=37.2
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcce--eEecCCCCCceeeEEEEcCCceEEEeCCCCcc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKK--VSVSATPGKTKHFQTLFVDDELLLCDCPGLVM 379 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~k--vsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~ 379 (595)
...++|+++|.+|||||||+|+|++... ..++..|++|.++ ....+.++||||...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~ 103 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVK 103 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCch
Confidence 4568999999999999999999998652 2234556666554 345788999999863
No 203
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.21 E-value=4.8e-07 Score=103.59 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=49.1
Q ss_pred eeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCCCCCCH
Q psy9995 141 LNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKADLLTR 217 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~DLl~~ 217 (595)
.+.|+||||+..+.. ....+...+..+|+||+|+|+..+.+..+. ..+...+ ..++|+++|+||+|+...
T Consensus 175 ~l~LiDTPGl~~~~~-----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~--~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 175 GIEIVDSPGLNDTEA-----RNELSLGYVNNCHAILFVMRASQPCTLGER--RYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TEEEEECCCHHHHHT-----CHHHHTHHHHSSSEEEEEEETTSTTCHHHH--HHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CeEEEECCCCCchhh-----HHHHHHHHHHhCCEEEEEEeCCCccchhHH--HHHHHHHHhhCCCEEEEEECcccccc
Confidence 578999999865321 234455678999999999999988764332 2222222 246789999999999754
No 204
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.21 E-value=1.1e-06 Score=81.50 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=42.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.......++.|.+. ..+.+ +..+.++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKNLKLNVWDLGGQT 73 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETTEEEEEEEEC---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECCEEEEEEECCCCH
Confidence 45899999999999999999999877677788888543 23333 4578899999985
No 205
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.20 E-value=4.6e-07 Score=83.63 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=44.9
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEc-CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFV-DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~-~~~~~liDtPGl~ 378 (595)
....+|+++|.+|||||||+|+|++.. +..+..|++|.++.. +.+ +..+.++||||..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 346899999999999999999999765 555667777766543 333 4568899999974
No 206
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.20 E-value=1.3e-06 Score=81.83 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=43.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.....+.+|.|.+...-.+ -+..+.++||||..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~ 71 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQE 71 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-TTEEEEEEECCC--
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-CCEEEEEEECCCCH
Confidence 589999999999999999999977666778888865432222 24578999999985
No 207
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.20 E-value=9.4e-07 Score=82.95 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=44.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.....+++|+|.+... +.+ +-.+.++||||..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEE--EEECCEEEEEEECCCCH
Confidence 4589999999999999999999988766778888865432 222 4568899999974
No 208
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.20 E-value=1.3e-06 Score=81.98 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=43.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.......+|.|.+.. .+.. +..+.++||||..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEETTEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEECCEEEEEEECCCCH
Confidence 358999999999999999999998776666667674433 2222 4578999999975
No 209
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.20 E-value=7.1e-07 Score=81.65 Aligned_cols=56 Identities=23% Similarity=0.279 Sum_probs=41.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.......++.|.+. ..+.. +..+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence 35899999999999999999998766544444555332 22333 4578899999975
No 210
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=7.1e-07 Score=84.37 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=47.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... ..+.+++|.|.....+.++. .+.++||||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 458999999999999999999997652 25678889888777666543 58899999964
No 211
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.19 E-value=1.3e-06 Score=81.52 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=45.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.....+.+++|.+.. .+.+ +..+.++||||..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECCEEEEEEECCCCH
Confidence 468999999999999999999998876778888986643 2332 4578999999974
No 212
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.19 E-value=1.1e-06 Score=80.85 Aligned_cols=58 Identities=28% Similarity=0.289 Sum_probs=39.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... ....++.|.+.....+.++. .+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 358999999999999999999997542 22233444443344455554 68999999964
No 213
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.19 E-value=1.3e-06 Score=79.19 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=37.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee--eEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH--FQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh--~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++..... ..+.++.. ...+.++. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 4789999999999999999999765322 22222222 23344443 37899999964
No 214
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.18 E-value=1e-06 Score=96.20 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=59.7
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCC---C----CchHHHHHHHHhCCCCc-EE
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLL---F----RCEDLERYVKEVSPHKR-NM 206 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~---~----~~~~Le~~lk~v~~~K~-~I 206 (595)
.+|.+..+.|+||||.. .+.+.....+..+|++|+|+|++++.. + ........+. ..+.| +|
T Consensus 116 ~~~~~~~~~iiDtPGh~--------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~--~~~vp~ii 185 (467)
T 1r5b_A 116 FETEHRRFSLLDAPGHK--------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR--TQGINHLV 185 (467)
T ss_dssp EECSSEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH--HTTCSSEE
T ss_pred EecCCeEEEEEECCCcH--------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH--HcCCCEEE
Confidence 45667888999999953 234455567789999999999998631 1 1111122222 23555 89
Q ss_pred EEEeCCCCCC----HHH----HHHHHHHHhhC-C------CeEEEEecccCCCC
Q psy9995 207 ILLNKADLLT----RKQ----RCYWTKYFNSV-N------VAVAFFSATNIYDD 245 (595)
Q Consensus 207 LVlNK~DLl~----~~~----~~~w~~~~~~~-g------i~vi~~SA~~~~~~ 245 (595)
+|+||+|+.+ .+. .....+++... | +.++++||+++.+.
T Consensus 186 vviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i 239 (467)
T 1r5b_A 186 VVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNV 239 (467)
T ss_dssp EEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTT
T ss_pred EEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccc
Confidence 9999999964 221 12334445444 3 45889999998774
No 215
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.17 E-value=1.1e-06 Score=100.68 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGK 356 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~ 356 (595)
.++|+|||.||||||||||+|+|.....++..|++
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 58999999999999999999999988888999988
No 216
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.17 E-value=1.3e-06 Score=79.73 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=37.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.. ......|+.|.++ ..+.++. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCCh
Confidence 4789999999999999999999755 3334445544443 4455543 57899999965
No 217
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.17 E-value=1.2e-06 Score=84.76 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCceEEEEeecCCCCcchHhhhhc-CcceeEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALL-NAKKVSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~-~~~kvsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+++ +.....+++++|+|.....+.++. .+.++||||..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence 446899999999999999999954 444567789999998877766543 57899999964
No 218
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.17 E-value=6.2e-07 Score=103.16 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=64.5
Q ss_pred eeEEEeCCCcccCh-----hhhhHHHHHHHHHHH-hhcCeEEEEEeCCCCCCCCch-HHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 141 LNLLQEEDGLVITP-----YEKNLDFWRQLWRVI-ERSDVIVQIVDARNPLLFRCE-DLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~-----~ern~e~~rql~~vi-e~sDvVl~VvDAR~Pl~~~~~-~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
.+.|+||||+...+ ......+.+.+...+ +.+|+||+|+|++.++...+. .+...+. ..++|+|+|+||+|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~--~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD--PQGQRTIGVITKLD 228 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC--TTCSSEEEEEECTT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH--hcCCCEEEEEeCcc
Confidence 36799999998733 111112222333344 579999999999988765544 3444443 34689999999999
Q ss_pred CCCHHHH-HHHHHH-Hh--hCC-CeEEEEecccCCCC
Q psy9995 214 LLTRKQR-CYWTKY-FN--SVN-VAVAFFSATNIYDD 245 (595)
Q Consensus 214 Ll~~~~~-~~w~~~-~~--~~g-i~vi~~SA~~~~~~ 245 (595)
++++... ..+... +. ..+ ..++++||+++.+.
T Consensus 229 lv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gv 265 (772)
T 3zvr_A 229 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 265 (772)
T ss_dssp SSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSS
T ss_pred cCCcchhhHHHHHHHhhhhhccCCceEEecccccccc
Confidence 9876432 111110 00 113 36778999998774
No 219
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.15 E-value=1.5e-06 Score=79.86 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=43.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++..... ...+.|.+.....+.++. .+.++||||..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 45899999999999999999999765322 334556666666666543 67899999964
No 220
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.15 E-value=1.2e-06 Score=97.68 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=33.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee--EecCCCCCcee
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV--SVSATPGKTKH 359 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv--sVs~tPG~TKh 359 (595)
...+|+|||.+|||||||||+|++.... .++..|++|+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 4679999999999999999999998754 58889988764
No 221
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.15 E-value=1.3e-06 Score=82.94 Aligned_cols=58 Identities=36% Similarity=0.409 Sum_probs=38.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ...+.+++|.+.....+.++. .+.++||||..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 45899999999999999999999765 234567778777666666543 47899999964
No 222
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.15 E-value=3.8e-07 Score=87.40 Aligned_cols=128 Identities=10% Similarity=-0.032 Sum_probs=77.1
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCe
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDV 174 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDv 174 (595)
+-|-..|+.||+++.+.|...+-. ....+.+ ..+.|.||+|... +. .+++ ..+..+|+
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~~---~~~~~~d~ 83 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED--YS---RLRP---LSYRGADI 83 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC--CC---C--C---GGGTTCSE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHH--HH---HHHH---hhccCCCE
Confidence 445566777777777777643211 0112333 4677899999632 11 1111 25778999
Q ss_pred EEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHH----------HHHHHHHHhhCCC-eEEEEeccc
Q psy9995 175 IVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQ----------RCYWTKYFNSVNV-AVAFFSATN 241 (595)
Q Consensus 175 Vl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~----------~~~w~~~~~~~gi-~vi~~SA~~ 241 (595)
+|+|+|+.++.++... .+...+.....+.|+|||+||+|+..... .....++....+. .++.+||++
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999887654321 12223332234789999999999965432 1222233334464 889999998
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 164 g~g 166 (212)
T 2j0v_A 164 QQN 166 (212)
T ss_dssp CTT
T ss_pred CCC
Confidence 866
No 223
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.15 E-value=1.5e-06 Score=82.91 Aligned_cols=58 Identities=28% Similarity=0.351 Sum_probs=42.0
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++.. +.....|+.|.++ ..+.++. .+.++||||..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 346899999999999999999999754 3344455555544 3455543 58999999965
No 224
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.15 E-value=1.1e-06 Score=81.99 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=41.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.......+|.|.+.. .+.. +..+.++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEECCEEEEEEECCCCH
Confidence 458999999999999999999998774444555564332 2333 4568899999974
No 225
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.14 E-value=5.6e-08 Score=92.60 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=72.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH----H---------HhhhhcC--eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER----D---------EFLQWRR--ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er----~---------~f~~wrg--~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..|+.|||++.+.|....- . ....+.+ ..+.|.||+|...-... ....+..+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~~~ 106 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI--------TSSYYRGA 106 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC--------SCC--CCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH--------HHHHhhcC
Confidence 455667888999999888764221 1 1223444 45778899994321110 11256789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHHH--HHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQR--CYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~~--~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|++|+|+|+.++.++ ..+..++..+ ..+.|+|||+||+|+.+.... .....+....+++++.+||+++.+
T Consensus 107 d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 182 (199)
T 3l0i_B 107 HGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182 (199)
T ss_dssp SEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HH
T ss_pred CEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999887643 3344454443 236799999999999754211 111223334467888899987654
No 226
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.14 E-value=8e-07 Score=84.81 Aligned_cols=131 Identities=10% Similarity=-0.018 Sum_probs=82.1
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeee--EEEeCCCcccChhhhhHHHHHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELN--LLQEEDGLVITPYEKNLDFWRQLWRVI 169 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~--~L~DT~Gi~~t~~ern~e~~rql~~vi 169 (595)
..-.+.|-..|++|||++.+.|.+.... ....+.+..+ .+.||+|... +. ..+++ ..+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~--~~~~~---~~~ 94 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD--AG--GWLRD---HCL 94 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG--GG--HHHHH---HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc--ch--hhhHH---Hhh
Confidence 3456778899999999999998532110 1122444444 4569999632 11 11222 246
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHh---C--CCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccC
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEV---S--PHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~--~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
..+|++|+|+|+.++.++.. +..++.++ . .+.|+|||.||+|+.+... ......+....+..++.+||+++
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~ 172 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSK--VPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALH 172 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHT--HHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred ccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCC
Confidence 78999999999988765432 33444333 1 3689999999999964311 12222333445778999999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 173 ~~ 174 (195)
T 3cbq_A 173 HN 174 (195)
T ss_dssp BS
T ss_pred CC
Confidence 66
No 227
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.14 E-value=1.6e-06 Score=80.06 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=43.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~~---~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++.........|.++.++.. +.++. .+.++||||..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3468999999999999999999998765444455665555543 34443 68899999964
No 228
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.14 E-value=9.8e-08 Score=116.51 Aligned_cols=134 Identities=24% Similarity=0.260 Sum_probs=95.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++++||.+|+|||||++.|+|.. ....+-+.+| |..... ++.+.+|.
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~-----------------~~~~G~I~id--G~~i~~-------------~~~~~lr~ 492 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY-----------------DVLKGKITID--GVDVRD-------------INLEFLRK 492 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS-----------------CCSEEEEEET--TEETTT-------------SCHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHhcccc-----------------ccccCcccCC--Cccchh-------------ccHHHHhh
Confidence 468999999999999999999976 4455677888 766554 67788999
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhhh-------cCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGYN-------RGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~~-------rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.|.+-...++.++.+| .||.+.....+.....+....++|++.++.+ +|..++|||.++...||++++
T Consensus 493 ~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~- 571 (1321)
T 4f4c_A 493 NVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR- 571 (1321)
T ss_dssp HEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT-
T ss_pred cccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc-
Confidence 9999998888999999999 5875322111111111112345666666554 888899999999999999975
Q ss_pred HHhCCceeec-CCCCCCh
Q psy9995 475 FVNGHLLYCQ-APPGVPQ 491 (595)
Q Consensus 475 ~~~GKL~~~~-~PP~~~~ 491 (595)
+-+++..- |--..|+
T Consensus 572 --~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 572 --NPKILLLDEATSALDA 587 (1321)
T ss_dssp --CCSEEEEESTTTTSCT
T ss_pred --CCCEEEEecccccCCH
Confidence 56665443 3333443
No 229
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.14 E-value=1.3e-06 Score=79.56 Aligned_cols=57 Identities=26% Similarity=0.312 Sum_probs=43.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++..... ..+++|.+.....+.++. .+.++||||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5899999999999999999999754322 345667666666665543 57899999964
No 230
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.14 E-value=2.4e-06 Score=81.13 Aligned_cols=134 Identities=8% Similarity=0.075 Sum_probs=82.9
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHH----------Hhhh-----hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHH
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERD----------EFLQ-----WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVI 169 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~----------~f~~-----wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vi 169 (595)
..-.+-|-..+++||+++.+.+...... .... .....+.+.||+|... +.... |. ....+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~--~~-~~~~~ 93 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD--FFDPT--FD-YEMIF 93 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC--TTCTT--CC-HHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH--HHhhh--hh-ccccc
Confidence 4556778889999999999877653221 0111 2235678899999532 11110 10 02456
Q ss_pred hhcCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHH----HHH----HHHHh-----hCCCe
Q psy9995 170 ERSDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQR----CYW----TKYFN-----SVNVA 233 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~----~~w----~~~~~-----~~gi~ 233 (595)
..+|++|+|+|+.++.......+..++..+ ..+.|++||.||+||++.+.. ..+ .+.+. ..+..
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 789999999999987322233444555543 457899999999999874321 111 12222 34668
Q ss_pred EEEEecccCCC
Q psy9995 234 VAFFSATNIYD 244 (595)
Q Consensus 234 vi~~SA~~~~~ 244 (595)
++.+||++ .+
T Consensus 174 ~~e~Sa~~-~~ 183 (196)
T 3llu_A 174 FYLTSIYD-HS 183 (196)
T ss_dssp EEEECTTS-TH
T ss_pred eEEEEech-hh
Confidence 88999988 65
No 231
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.14 E-value=1.8e-06 Score=78.49 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=39.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. +.....|..+.++ ..+.++. .+.++||||..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcH
Confidence 35899999999999999999999754 2222233333333 3344443 68899999965
No 232
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.14 E-value=8.2e-07 Score=93.42 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.5
Q ss_pred CCceEEEEeecCCCCcchHhhhhcC
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~ 344 (595)
.....|+|+|+||||||||+|+|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999996
No 233
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.13 E-value=1.6e-06 Score=79.82 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=42.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ......|+.|.++. .+.++. .+.++||||..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 45899999999999999999999865 34556677666554 444443 57899999964
No 234
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.12 E-value=1e-06 Score=82.50 Aligned_cols=123 Identities=16% Similarity=0.124 Sum_probs=76.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH------------hhhh--cCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE------------FLQW--RRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~------------f~~w--rg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.||+++.+.|....-.. ...+ ....+.+.||+|... +.. ++ ...+..+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~~---~~---~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY--YDN---VR---PLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGG--GTT---TG---GGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChh--hhh---hH---HhhcCCC
Confidence 345667789999999999988643210 0112 234567899999532 111 11 1246789
Q ss_pred CeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCH-----------------HHHHHHHHHHhhCC-C
Q psy9995 173 DVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTR-----------------KQRCYWTKYFNSVN-V 232 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~-----------------~~~~~w~~~~~~~g-i 232 (595)
|++|+|+|+.++.++... .+...+.....+.|+|||.||+|+.+. ++...|.+ ..+ .
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~ 156 (184)
T 1m7b_A 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK---QIGAA 156 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH---HHTCS
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH---HcCCc
Confidence 999999999887654321 122233333457899999999999642 22233332 334 5
Q ss_pred eEEEEecc
Q psy9995 233 AVAFFSAT 240 (595)
Q Consensus 233 ~vi~~SA~ 240 (595)
.++.+||+
T Consensus 157 ~~~e~Sa~ 164 (184)
T 1m7b_A 157 TYIECSAL 164 (184)
T ss_dssp EEEECBTT
T ss_pred EEEEeeec
Confidence 78889997
No 235
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.12 E-value=7e-07 Score=98.97 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=79.9
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH---------Hh----------h----hhcCeeeEEEeCCCcccChhhhhHHHHHH
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD---------EF----------L----QWRRELNLLQEEDGLVITPYEKNLDFWRQ 164 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~---------~f----------~----~wrg~~~~L~DT~Gi~~t~~ern~e~~rq 164 (595)
.+.+-..|++||||+.+.|....-. .+ . ...+..+.+.||+|... +.. ++
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~--~~~---~~-- 115 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI--MHA---SH-- 115 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT--TTT---TC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH--HHH---HH--
Confidence 4556678999999999999876521 11 1 12257789999999421 111 11
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccC
Q psy9995 165 LWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 165 l~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~ 242 (595)
...+..+|++|+|+|+.++ .....+...+.....+.|+|||+||+|+.+... .....+.+...+.+++.+||+++
T Consensus 116 -~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 116 -QFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp -HHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred -HHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 1246779999999999754 122223333443345689999999999975422 34455566666888999999998
Q ss_pred CCCC
Q psy9995 243 YDDI 246 (595)
Q Consensus 243 ~~~~ 246 (595)
.|..
T Consensus 193 ~gi~ 196 (535)
T 3dpu_A 193 DGVE 196 (535)
T ss_dssp --CT
T ss_pred cCHH
Confidence 8743
No 236
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.12 E-value=5.9e-07 Score=95.40 Aligned_cols=57 Identities=35% Similarity=0.472 Sum_probs=44.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEE----------------------cCCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLF----------------------VDDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~----------------------~~~~~~liDtPGl~ 378 (595)
++|++||.||||||||+|+|++.. +.+++.|++|.... ... .+..+.++||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 569999999999999999999875 67788899887532 222 23468999999998
Q ss_pred cC
Q psy9995 379 MP 380 (595)
Q Consensus 379 ~p 380 (595)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 237
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.11 E-value=1.6e-06 Score=88.64 Aligned_cols=130 Identities=13% Similarity=-0.037 Sum_probs=81.8
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH------------HhhhhcCeeeE--EEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD------------EFLQWRRELNL--LQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~------------~f~~wrg~~~~--L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
-.+-|-..|+.|||++.+.+....-. ......+..+. |.||+|...-. ......+..+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD--------RLRPLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT--------TTGGGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh--------HHHHHhccCC
Confidence 45677889999999999998754311 11123344444 89999964211 1112246789
Q ss_pred CeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCHHH--------------HHHHHHHHhhCCC-eEE
Q psy9995 173 DVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTRKQ--------------RCYWTKYFNSVNV-AVA 235 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~~~--------------~~~w~~~~~~~gi-~vi 235 (595)
|++++|+|+.++.++... .+...+.....+.|+|||+||+|+.+... .....++....+. .++
T Consensus 228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 307 (332)
T 2wkq_A 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 307 (332)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEE
Confidence 999999999887654331 12233333344789999999999965321 1122233344465 889
Q ss_pred EEecccCCC
Q psy9995 236 FFSATNIYD 244 (595)
Q Consensus 236 ~~SA~~~~~ 244 (595)
.+||+++.+
T Consensus 308 ~~Sa~~~~g 316 (332)
T 2wkq_A 308 ECSALTQRG 316 (332)
T ss_dssp ECCTTTCTT
T ss_pred EecCCCCcC
Confidence 999988765
No 238
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.11 E-value=9.1e-07 Score=98.69 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=55.4
Q ss_pred eeEEEeCCCcccChh---hhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhC-CCCcEEEEEeCCCCCC
Q psy9995 141 LNLLQEEDGLVITPY---EKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVS-PHKRNMILLNKADLLT 216 (595)
Q Consensus 141 ~~~L~DT~Gi~~t~~---ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~-~~K~~ILVlNK~DLl~ 216 (595)
.+.|+||||+..... .+...+...++..+..+|+||+|+|+..+-.. .....++..+. .+.++++|+||+|+++
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~--~~~~~~l~~l~~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS--DEFSEAIGALRGHEDKIRVVLNKADMVE 232 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC--HHHHHHHHHTTTCGGGEEEEEECGGGSC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC--HHHHHHHHHHHhcCCCEEEEEECCCccC
Confidence 478999999875221 11111345556678999999999999875222 22334444432 3578999999999998
Q ss_pred HHHHHHHHHHH
Q psy9995 217 RKQRCYWTKYF 227 (595)
Q Consensus 217 ~~~~~~w~~~~ 227 (595)
.+++......+
T Consensus 233 ~~el~~~~~~l 243 (550)
T 2qpt_A 233 TQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87766554443
No 239
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.11 E-value=1.2e-06 Score=90.42 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=46.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--Ec--CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FV--DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~--~~~~~liDtPGl~ 378 (595)
.++|+++|.||||||||+|+|++.....++..||.|.+.... .+ +-.+.++||||..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 478999999999999999999987666677889999886543 32 2367899999975
No 240
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.11 E-value=8.3e-07 Score=93.33 Aligned_cols=55 Identities=31% Similarity=0.504 Sum_probs=45.9
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC--CceEEEeCCCCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD--DELLLCDCPGLVM 379 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~--~~~~liDtPGl~~ 379 (595)
.|+|||+||||||||||+|++.+ ..++..|++|.+... +.++ ..+.|+||||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 68999999999999999999765 678999999987553 4444 5799999999863
No 241
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.10 E-value=2e-06 Score=79.57 Aligned_cols=58 Identities=28% Similarity=0.281 Sum_probs=42.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++...... ..+.|.+.....+.++. .+.++||||..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 358999999999999999999997653222 23445555555555543 68999999964
No 242
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.10 E-value=1.5e-06 Score=94.01 Aligned_cols=60 Identities=33% Similarity=0.247 Sum_probs=38.6
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEE--EcC-C-ceEEEeCCCCcc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FVD-D-ELLLCDCPGLVM 379 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti--~~~-~-~~~liDtPGl~~ 379 (595)
...++|+++|.+|||||||+|+|++.....++.+||+|.+.... .+. . .+.++||||+..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 34689999999999999999999998866789999999886543 332 2 789999999873
No 243
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.10 E-value=2e-06 Score=80.20 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=74.1
Q ss_pred cCCCCCCCCcCCCHHHHHHHHHH----Hh-----hhhcCeeeEEEeCCCcccCh------hhhhHHHHHHHHHH-HhhcC
Q psy9995 110 KIPRRPKWDKNTTAEQLQAMERD----EF-----LQWRRELNLLQEEDGLVITP------YEKNLDFWRQLWRV-IERSD 173 (595)
Q Consensus 110 ~iprRPnw~kst~~n~L~~~Er~----~f-----~~wrg~~~~L~DT~Gi~~t~------~ern~e~~rql~~v-ie~sD 173 (595)
-|-..|+.|||++.+.|....-. .. ..+.-..+.+.||||+.... .++-..++....+. +..++
T Consensus 5 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (190)
T 2cxx_A 5 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNID 84 (190)
T ss_dssp EEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred EEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCC
Confidence 34567888999998888754211 00 00111146789999964321 12222223333333 56678
Q ss_pred eEEEEEeCCCCCC-----------CCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhC----CCeEEE
Q psy9995 174 VIVQIVDARNPLL-----------FRCEDLERYVKEVSPHKRNMILLNKADLLTRK--QRCYWTKYFNSV----NVAVAF 236 (595)
Q Consensus 174 vVl~VvDAR~Pl~-----------~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~----gi~vi~ 236 (595)
+++.|+|+..... .....+...+. ..+.|+++|+||+|+.... ....|.+.+... +..++.
T Consensus 85 ~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 2cxx_A 85 VAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR--ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIP 162 (190)
T ss_dssp EEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH--HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEE
T ss_pred EEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHH--hcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEE
Confidence 9999999753210 00011222332 2468999999999998753 344454443211 124789
Q ss_pred EecccCCC
Q psy9995 237 FSATNIYD 244 (595)
Q Consensus 237 ~SA~~~~~ 244 (595)
+||+++.+
T Consensus 163 ~Sa~~~~~ 170 (190)
T 2cxx_A 163 ISAKFGDN 170 (190)
T ss_dssp CCTTTCTT
T ss_pred EecCCCCC
Confidence 99998876
No 244
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.10 E-value=2.2e-06 Score=81.09 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++.... ...++.|.+.....+.++. .+.++||||..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 44689999999999999999999976532 2233444444444555544 57899999964
No 245
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.10 E-value=2.2e-06 Score=79.69 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=39.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++... +...+++|.... .+.++. .+.++||||..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcH
Confidence 58999999999999999999997652 344455554433 233333 36689999965
No 246
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.10 E-value=1.2e-06 Score=84.50 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=77.8
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHHH------------hhhhc--CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERDE------------FLQWR--RELNLLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~~------------f~~wr--g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.-.+-|-..|+.||+++.+.|....-.. ...+. ...+.|.||+|... +.. ++ ...+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~---~~---~~~~~~ 99 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY--YDN---VR---PLSYPD 99 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGG--GTT---TG---GGGCTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHh--hhH---HH---HhhccC
Confidence 3467788889999999999988653210 01122 34577899999532 111 11 124678
Q ss_pred cCeEEEEEeCCCCCCCCch--HHHHHHHHhCCCCcEEEEEeCCCCCCH-----------------HHHHHHHHHHhhCC-
Q psy9995 172 SDVIVQIVDARNPLLFRCE--DLERYVKEVSPHKRNMILLNKADLLTR-----------------KQRCYWTKYFNSVN- 231 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~--~Le~~lk~v~~~K~~ILVlNK~DLl~~-----------------~~~~~w~~~~~~~g- 231 (595)
+|++|+|+|+.++.++... .+...+.....+.|+|||.||+|+.+. ++...|. ...+
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~ 176 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA---KQIGA 176 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH---HHHTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH---HHcCC
Confidence 9999999999887654321 122233333457899999999999642 2222333 2334
Q ss_pred CeEEEEecc
Q psy9995 232 VAVAFFSAT 240 (595)
Q Consensus 232 i~vi~~SA~ 240 (595)
..++.+||+
T Consensus 177 ~~~~e~SAk 185 (205)
T 1gwn_A 177 ATYIECSAL 185 (205)
T ss_dssp SEEEECCTT
T ss_pred CEEEEeeec
Confidence 578889997
No 247
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.09 E-value=2.5e-06 Score=80.05 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=43.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ...++.|.+.....+..+. .+.++||||..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 3589999999999999999999976532 2345566666555555433 67899999964
No 248
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.08 E-value=2.5e-06 Score=80.90 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=43.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.... ...++.|.|.....+.++. .+.++||||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 589999999999999999999986532 2345556666555555543 67899999974
No 249
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.08 E-value=2.7e-06 Score=76.99 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=37.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++... ....++++... ..+.++. .+.++||||..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 47999999999999999999997652 22333333222 2234443 57899999965
No 250
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.08 E-value=9.3e-07 Score=92.97 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=65.1
Q ss_pred eeeEEEeCCCcccC-----hhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhC-CCCcEEEEEeCCC
Q psy9995 140 ELNLLQEEDGLVIT-----PYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVS-PHKRNMILLNKAD 213 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t-----~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~-~~K~~ILVlNK~D 213 (595)
..+.|+||||+... +......+...+...+..+|+||+|+|+.+..... .+...+++.+. .++++|+|+||+|
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 35789999998764 22333344556677899999999999875433222 33344555443 4679999999999
Q ss_pred CCCHHHHHHHHHHHh----hCCCeEEEEecccCCC
Q psy9995 214 LLTRKQRCYWTKYFN----SVNVAVAFFSATNIYD 244 (595)
Q Consensus 214 Ll~~~~~~~w~~~~~----~~gi~vi~~SA~~~~~ 244 (595)
++++... +.+.+. ..+..++.+|+..+.+
T Consensus 215 l~~~~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~ 247 (360)
T 3t34_A 215 LMDKGTD--AVEILEGRSFKLKYPWVGVVNRSQAD 247 (360)
T ss_dssp GCCTTCC--SHHHHTTSSSCCSSCCEEECCCCHHH
T ss_pred cCCCccc--HHHHHcCccccccCCeEEEEECChHH
Confidence 9875421 222222 2355677888876543
No 251
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.07 E-value=2.5e-06 Score=82.01 Aligned_cols=58 Identities=29% Similarity=0.371 Sum_probs=44.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc-eeEecCCCCCceeeEEEEcC----CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVD----DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~-kvsVs~tPG~TKh~Qti~~~----~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ......+.|.+.....+... -.+.++||||..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 72 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCch
Confidence 45899999999999999999999644 34456777776665554443 248899999975
No 252
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.07 E-value=2.8e-06 Score=79.39 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..++|+++|.+|||||||||+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45899999999999999999999865
No 253
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.07 E-value=2.6e-06 Score=77.72 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=40.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ......|..+.++. .+.++. .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35899999999999999999999754 33333444444443 445443 57888999964
No 254
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.07 E-value=3.3e-06 Score=78.33 Aligned_cols=56 Identities=29% Similarity=0.316 Sum_probs=39.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++... ....++.|.+. ...+.++. .+.++||||..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~ 65 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQD 65 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCch
Confidence 58999999999999999999995442 22334444443 23344443 46799999975
No 255
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.07 E-value=1.1e-06 Score=84.56 Aligned_cols=136 Identities=13% Similarity=0.024 Sum_probs=74.5
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHHHHH---------hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeE
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAMERDE---------FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVI 175 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~Er~~---------f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvV 175 (595)
....+-|-..|+.||+++.+.|....-.. ...+....+.+.||||...-. .....-+...+..+|++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~~~~~~~~~~~ 86 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR----YKLSDYLKTRAKFVKGL 86 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGT----HHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHHH----HHHHHHHHhccccCCEE
Confidence 45567788899999999999998754210 111234567899999973211 11112222234458999
Q ss_pred EEEEeCC-CCCCCCc--hHHHHHHHH----hCCCCcEEEEEeCCCCCCHHHHHHHHH--------HHhhCCCeEEEEecc
Q psy9995 176 VQIVDAR-NPLLFRC--EDLERYVKE----VSPHKRNMILLNKADLLTRKQRCYWTK--------YFNSVNVAVAFFSAT 240 (595)
Q Consensus 176 l~VvDAR-~Pl~~~~--~~Le~~lk~----v~~~K~~ILVlNK~DLl~~~~~~~w~~--------~~~~~gi~vi~~SA~ 240 (595)
|+|+|+. ++..+.. ..+...+.. ...+.|++||+||+|+.+......+.+ +....+..++.+||+
T Consensus 87 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~ 166 (218)
T 1nrj_B 87 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERK 166 (218)
T ss_dssp EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred EEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999998 5544321 122222221 124789999999999986533222211 111223456778888
Q ss_pred cCCC
Q psy9995 241 NIYD 244 (595)
Q Consensus 241 ~~~~ 244 (595)
++.+
T Consensus 167 ~~~~ 170 (218)
T 1nrj_B 167 INEE 170 (218)
T ss_dssp ----
T ss_pred cccc
Confidence 7654
No 256
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.06 E-value=5.9e-06 Score=98.35 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=86.6
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH----H-------------------------hhhhcCeeeEEEeCCCcccChhhhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD----E-------------------------FLQWRRELNLLQEEDGLVITPYEKN 158 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~----~-------------------------f~~wrg~~~~L~DT~Gi~~t~~ern 158 (595)
.+.|-..++.||||+.+.|.....+ . ..++.+..+.|+||||..
T Consensus 298 nIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe------- 370 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA------- 370 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH-------
T ss_pred EEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH-------
Confidence 3567889999999999999875211 0 123456678899999953
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCc-EEEEEeCCCCCCHHHH-----HHHHHHHhhCC-
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKR-NMILLNKADLLTRKQR-----CYWTKYFNSVN- 231 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~-~ILVlNK~DLl~~~~~-----~~w~~~~~~~g- 231 (595)
++.+.+...+..+|++|+|+|+.++...........+.. .+.| +|||+||+|+.+...+ ....+++...+
T Consensus 371 -dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 371 -DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp -HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 345666677889999999999998765544333333432 2566 7899999999863221 23344555544
Q ss_pred ----CeEEEEecccC
Q psy9995 232 ----VAVAFFSATNI 242 (595)
Q Consensus 232 ----i~vi~~SA~~~ 242 (595)
++++++||+++
T Consensus 448 ~~~~vp~IpvSAktG 462 (1289)
T 3avx_A 448 PGDDTPIVRGSALKA 462 (1289)
T ss_dssp CTTTCCEEECCSTTT
T ss_pred cccceeEEEEEeccC
Confidence 57899999987
No 257
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.06 E-value=2.1e-06 Score=80.38 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=43.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||||+|++.... ...++.|.+.....+.++. .+.++||||..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCch
Confidence 489999999999999999999976522 3345556666656665543 57899999975
No 258
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.06 E-value=3.7e-06 Score=78.95 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=41.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ...++.|.+.....+.++. .+.++||||..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 4589999999999999999999865422 1233444444444555554 68999999964
No 259
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.06 E-value=2.8e-06 Score=79.86 Aligned_cols=57 Identities=25% Similarity=0.258 Sum_probs=40.7
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEe--cCCCCCceeeEEEE-cCCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSV--SATPGKTKHFQTLF-VDDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsV--s~tPG~TKh~Qti~-~~~~~~liDtPGl~ 378 (595)
....+|+++|.+|||||||+|+|++.....+ .+|.|.+.. .+. ....+.++||||..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCH
Confidence 3468999999999999999999998776555 666664332 222 24578999999985
No 260
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.06 E-value=2.1e-06 Score=80.67 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=39.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce--eEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK--VSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k--vsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... .....|.|.+ ...+.+ +..+.++||||..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECCEEEEEEECCCCH
Confidence 458999999999999999999998762 2333344422 223333 4578999999965
No 261
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.05 E-value=3.3e-06 Score=77.61 Aligned_cols=56 Identities=23% Similarity=0.364 Sum_probs=41.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.. ......|..|.++. .+.++. .+.++||||..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 4899999999999999999999654 33344566665554 344443 68899999964
No 262
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.04 E-value=2.8e-06 Score=79.74 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=42.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ......|+.|.++ ..+.++. .+.++||||..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 45899999999999999999999754 3444456665554 4455543 57899999964
No 263
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.04 E-value=2.4e-06 Score=80.89 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=42.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.....+.+|.|.+. ..+.+ +..+.++||||..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~ 78 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGNIKFTTFDLGGHI 78 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETTEEEEEEECCCSG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECCEEEEEEECCCCH
Confidence 34789999999999999999999876555666777653 23333 3478899999985
No 264
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.04 E-value=2.9e-06 Score=81.01 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=38.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..+|+++|.+|||||||+|+|.+.....+.+|.|.+.. .+.+ +..+.++||||..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcH
Confidence 47899999999999999999998765566677777643 3333 3478899999965
No 265
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.04 E-value=3.6e-06 Score=80.65 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=42.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcC----CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVD----DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~----~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. .+...+.++.++..+.++ ..+.++||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 35899999999999999999999765 234445666666666664 358999999975
No 266
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.04 E-value=1.9e-06 Score=79.39 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=37.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcC----CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVD----DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~----~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ...++.|.+.....+.++ ..+.++||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 4689999999999999999999975421 222334444444444443 257899999964
No 267
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.03 E-value=4.1e-06 Score=75.47 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=37.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee--eEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH--FQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh--~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.... ...++++.. ...+..+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCch
Confidence 378999999999999999999976422 222233222 22333333 36889999975
No 268
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.03 E-value=2.9e-06 Score=80.47 Aligned_cols=57 Identities=26% Similarity=0.387 Sum_probs=41.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ......|..|.++. .+.++. .+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 45899999999999999999999765 23333455544443 344443 57999999975
No 269
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.03 E-value=3e-06 Score=79.67 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=41.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||||+|++...... ..+.|.+.....+.++ ..+.++||||..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch
Confidence 458999999999999999999997653322 2334554444444443 357899999985
No 270
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.02 E-value=2.9e-06 Score=77.10 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=38.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
++|+++|.+|||||||+|+|++..-....+|.|.+ ...+.. +..+.++||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEECCEEEEEEEcCCCh
Confidence 47999999999999999999876543333333422 222333 4578999999974
No 271
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.01 E-value=9.6e-06 Score=77.26 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=80.7
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHH-----HH--Hh------hhhcCeeeEEEeCCCcccChhhh-hHHHHH-HHHHHH--
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAME-----RD--EF------LQWRRELNLLQEEDGLVITPYEK-NLDFWR-QLWRVI-- 169 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~E-----r~--~f------~~wrg~~~~L~DT~Gi~~t~~er-n~e~~r-ql~~vi-- 169 (595)
..+.|-.+|+.||||+.+.|.+.. .. .. ..+.+ .+.+.||+|+....... ..+-|+ .+...+
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 105 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEK 105 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHh
Confidence 456777889999999999887654 11 11 11112 46789999975421111 111122 233333
Q ss_pred -hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHH----HHHHHHhhCC--CeEEEEecccC
Q psy9995 170 -ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC----YWTKYFNSVN--VAVAFFSATNI 242 (595)
Q Consensus 170 -e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~----~w~~~~~~~g--i~vi~~SA~~~ 242 (595)
..+|.+++|+|+..+.......+..++.. .+.|.++|.||+|+++..++. .....+.+.+ +.++++||+.+
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~ 183 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK 183 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCC
Confidence 57899999999998876544445555542 467889999999999865432 2233343333 45678898876
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 184 ~~ 185 (210)
T 1pui_A 184 QG 185 (210)
T ss_dssp BS
T ss_pred CC
Confidence 54
No 272
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.01 E-value=3.5e-06 Score=76.48 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=36.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee-e-EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-F-QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh-~-Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.... ...+.++.. + ..+.++. .+.++||||..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChH
Confidence 478999999999999999999975421 222222222 2 2233332 47899999975
No 273
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.00 E-value=3e-06 Score=91.32 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=88.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcC-eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRR-ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg-~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
..+.|-..|+.||||+++.|...... ....+.+ ..+.+.||+|++....+- ..+.....+.++++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~-~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG-KGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS-CCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhh-hhhhHHHHHHHHHH
Confidence 34567788999999999999865211 1233443 567889999986532211 01112233457899
Q ss_pred CeEEEEEeCC-CCCCCCchHHHHHHHHhC---CCCcEEEEEeCCCCCCHHHHHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 173 DVIVQIVDAR-NPLLFRCEDLERYVKEVS---PHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 173 DvVl~VvDAR-~Pl~~~~~~Le~~lk~v~---~~K~~ILVlNK~DLl~~~~~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
|.+|+|+|+. .|.... ....+.+..+. ..+|.|||+||+|+........+.+.+...+..++++||+++.+
T Consensus 237 ~~lL~vvDls~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 237 RVLLYVLDAADEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG 311 (416)
T ss_dssp SEEEEEEETTSCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HhhhEEeCCccCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccC
Confidence 9999999995 332111 11111111111 25899999999999887555666677766788899999988765
No 274
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.99 E-value=4.3e-06 Score=78.70 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEe-cCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsV-s~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++...... ..+.|.+.....+.++. .+.++||||..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCch
Confidence 3468999999999999999999997653322 33445555555566654 68899999965
No 275
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.99 E-value=4.1e-06 Score=77.85 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=41.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ......|..+..+ ..+.++. .+.++||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35899999999999999999999755 3333445555444 3344444 67899999964
No 276
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.99 E-value=1.1e-05 Score=90.90 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=66.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH-------------hhhhc-----------C-------eeeEEEeCCCcccChh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE-------------FLQWR-----------R-------ELNLLQEEDGLVITPY 155 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~-------------f~~wr-----------g-------~~~~L~DT~Gi~~t~~ 155 (595)
..+.|-..++.||||+.+.|....-.. +..|. + ..+.|+||||...-..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~ 85 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH
Confidence 345677788999999999998654311 11121 1 1378999999643211
Q ss_pred hhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC
Q psy9995 156 EKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT 216 (595)
Q Consensus 156 ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~ 216 (595)
.+. +.+..+|++|+|+|+.++..........+++ ..+.|+|+|+||+|+.+
T Consensus 86 ~~~--------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~--~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 86 LRK--------RGGALADLAILIVDINEGFKPQTQEALNILR--MYRTPFVVAANKIDRIH 136 (594)
T ss_dssp SBC--------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHH--HTTCCEEEEEECGGGST
T ss_pred HHH--------HHHhhCCEEEEEEECCCCccHhHHHHHHHHH--HcCCeEEEEeccccccc
Confidence 111 2457799999999999866433333334444 35789999999999974
No 277
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.98 E-value=4.7e-06 Score=95.41 Aligned_cols=100 Identities=20% Similarity=0.163 Sum_probs=71.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH----------------------H---------HhhhhcCeeeEEEeCCCcccChhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER----------------------D---------EFLQWRRELNLLQEEDGLVITPYE 156 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er----------------------~---------~f~~wrg~~~~L~DT~Gi~~t~~e 156 (595)
.+.|-..|+.||||+.|.|..... + ....|.+..+.|+||||...-
T Consensus 12 ~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df--- 88 (693)
T 2xex_A 12 NIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF--- 88 (693)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC---
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch---
Confidence 344556777888888888774321 1 125677888999999997541
Q ss_pred hhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH
Q psy9995 157 KNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR 217 (595)
Q Consensus 157 rn~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~ 217 (595)
.....+.+..+|.+|+|+|+.++.......+...+. ..+.|+|+|+||+|+...
T Consensus 89 -----~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~--~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 89 -----TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQAT--TYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp -----CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHH--HTTCCEEEEEECTTSTTC
T ss_pred -----HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHH--HcCCCEEEEEECCCcccc
Confidence 223456778899999999999877655544444444 347899999999999764
No 278
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.98 E-value=2.8e-06 Score=77.34 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=36.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.... ...++.+.+.. ..+..+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCch
Confidence 478999999999999999999975421 11122222211 1222222 57899999975
No 279
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.98 E-value=5.6e-06 Score=76.59 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=39.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... +...+++|... ..+.++. .+.++||||..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 358999999999999999999997652 23333333322 2234443 57899999965
No 280
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.96 E-value=4.5e-06 Score=76.90 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=40.4
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcC----CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVD----DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~----~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ...++.|..-....+.++ ..+.++||||..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCc
Confidence 4589999999999999999999975521 122334433333344443 368999999975
No 281
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.96 E-value=5.5e-06 Score=78.91 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee--eEEEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH--FQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh--~Qti~~~~---~~~liDtPGl~ 378 (595)
+..++|+++|.+|||||||+|+|++.. ......|..+.. ...+.++. .+.++||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 346899999999999999999999765 333334444433 33444543 68999999964
No 282
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.95 E-value=5e-06 Score=76.83 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=41.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCC---ceEEEeCCCCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD---ELLLCDCPGLVM 379 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~~ 379 (595)
..++|+++|.+|||||||+|.|++..-....+|.|.+. ...+.++. .+.++||||...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence 35899999999999999999999765444455555332 23344433 468899999764
No 283
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.94 E-value=6.7e-06 Score=76.93 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=37.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++... ....+++|... ..+.++. .+.++||||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 58999999999999999999997652 23334444332 2333433 37899999975
No 284
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.94 E-value=3e-06 Score=80.50 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=41.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCC--CCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP--GKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP--G~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. ......| |.+.....+.++. .+.++||||..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 46899999999999999999999754 3333334 4444444555544 58899999964
No 285
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.94 E-value=5.8e-06 Score=78.68 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee--eEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH--FQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh--~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. +.....|..+.+ ...+.++. .+.++||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 35899999999999999999999755 333334444444 34455554 68999999975
No 286
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.94 E-value=7.1e-06 Score=77.73 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=38.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++..-....+|.|.+ ...+.. +..+.++||||..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETTEEEEEEECC---
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECCEEEEEEECCCCH
Confidence 4589999999999999999999987655544444522 222333 3468899999975
No 287
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.94 E-value=4.2e-06 Score=79.12 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=19.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCce---eeEEEEcCC-----ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK---HFQTLFVDD-----ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TK---h~Qti~~~~-----~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.....++..+.++. ....+.++. .+.++||||..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 5899999999999999999999873222333333332 233455543 48999999985
No 288
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.94 E-value=6.2e-06 Score=91.56 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=71.2
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHH--------------------------HHH---------HhhhhcCeeeEEEeCCCc
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAM--------------------------ERD---------EFLQWRRELNLLQEEDGL 150 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~--------------------------Er~---------~f~~wrg~~~~L~DT~Gi 150 (595)
.-.+.|-..|+.||||+.+.|... |+. ....|.+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 345667778888888888888742 011 124578889999999996
Q ss_pred ccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH
Q psy9995 151 VITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR 217 (595)
Q Consensus 151 ~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~ 217 (595)
.. | ....++.+..+|.+|+|+|+.++.......+...+. ..+.|+|+|+||+|+...
T Consensus 93 ~d--f------~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~--~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 ED--F------SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TT--C------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT--TTTCCEEEEEECTTSCCS
T ss_pred hh--H------HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH--HcCCCEEEEEcCcCCccc
Confidence 42 1 234556788999999999999876433333333332 347899999999999754
No 289
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.93 E-value=3.8e-06 Score=78.89 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=77.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-----------Hhhhh---------cCeeeEEEeCCCcccChhhhhHHHHHHHHH
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-----------EFLQW---------RRELNLLQEEDGLVITPYEKNLDFWRQLWR 167 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-----------~f~~w---------rg~~~~L~DT~Gi~~t~~ern~e~~rql~~ 167 (595)
.+.|-.+|++||||+.+.+...++. .+..| ....+.+.||+|... +. .++ ..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~---~~~---~~ 75 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE--FY---STH---PH 75 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHH--HH---TTS---HH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH--HH---Hhh---HH
Confidence 4567788999999999998764221 11111 244567889999531 11 111 23
Q ss_pred HHhhcCeEEEEEeCCCCCCCCchHHHHHHHHh---CCCCcEEEEEeCCCCCCHHHHH----HHHHHHh-hCCCe----EE
Q psy9995 168 VIERSDVIVQIVDARNPLLFRCEDLERYVKEV---SPHKRNMILLNKADLLTRKQRC----YWTKYFN-SVNVA----VA 235 (595)
Q Consensus 168 vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v---~~~K~~ILVlNK~DLl~~~~~~----~w~~~~~-~~gi~----vi 235 (595)
.+..+|++++|+|..++..+. ..+..++.++ ..+.|+|||.||+|+.+..... ...+.+. ..+.. ++
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYH 154 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred HccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheE
Confidence 466799999999998764211 2344444432 3468899999999998765432 2223332 33554 78
Q ss_pred EEecccCC
Q psy9995 236 FFSATNIY 243 (595)
Q Consensus 236 ~~SA~~~~ 243 (595)
.+||+++.
T Consensus 155 ~~Sa~~~~ 162 (184)
T 2zej_A 155 FVNATEES 162 (184)
T ss_dssp ECCTTSCC
T ss_pred EEecccCc
Confidence 89998764
No 290
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.93 E-value=7.8e-06 Score=75.98 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=39.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCcee-eEEEEcC------------CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKH-FQTLFVD------------DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh-~Qti~~~------------~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ...++.|.+-. ...+..+ ..+.++||||..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 3589999999999999999999975421 11233333222 2233333 268899999974
No 291
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.93 E-value=7.9e-06 Score=74.54 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=34.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCC-CCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSAT-PGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~t-PG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++......... ++.......+.++. .+.++||||..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 62 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCcc
Confidence 47899999999999999999987553333222 22222223334443 56799999985
No 292
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.92 E-value=2.9e-06 Score=78.83 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=25.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++.. ......|+.+.++. .+.++. .+.++||||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 5899999999999999999999654 33444455555544 344443 58899999974
No 293
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.92 E-value=2.5e-06 Score=80.35 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=44.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcC---CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~---~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... ....+++|.+.....+.++ -.+.++||||..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 358999999999999999999997542 2334566777776666553 258899999953
No 294
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.92 E-value=7.8e-06 Score=77.25 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=40.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... +...+++|... ..+.++. .+.++||||..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 468999999999999999999997652 33344444332 2234443 58899999964
No 295
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.91 E-value=7.1e-06 Score=82.55 Aligned_cols=111 Identities=9% Similarity=-0.000 Sum_probs=71.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHH--h
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVI--E 170 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vi--e 170 (595)
..+-+-..++.||||+.|.|...+.. ....+.+..+.|+||||+..... ....+++.+++.+ .
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~-~~~~~~~~i~~~~~~~ 118 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY-INDMALNIIKSFLLDK 118 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE-ECHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc-chHHHHHHHHHHhhcC
Confidence 35667788999999999999865531 12345677889999999865432 1223445554433 3
Q ss_pred hcCeEEEEEeCCCCCCC-CchHHHHHHHHhCCC---CcEEEEEeCCCCCCHH
Q psy9995 171 RSDVIVQIVDARNPLLF-RCEDLERYVKEVSPH---KRNMILLNKADLLTRK 218 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~-~~~~Le~~lk~v~~~---K~~ILVlNK~DLl~~~ 218 (595)
.+|++|+|+|+...-.. ....+.+.+...... +|+|+|+||+|+.+++
T Consensus 119 ~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 119 TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 79999999887543211 122233334322111 5899999999998754
No 296
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.91 E-value=9.9e-06 Score=75.19 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=38.0
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee-EEEEcCCc---eEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF-QTLFVDDE---LLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~-Qti~~~~~---~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++... .....|.++..+ ..+.++.. +.++||||..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCCcEEEEEEEECCCch
Confidence 3468999999999999999999996532 222223222222 23344432 5569999965
No 297
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.90 E-value=9.9e-06 Score=74.49 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=40.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. .++..+++|... ..+.++. .+.++||||..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 68 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCch
Confidence 45899999999999999999999764 234444444432 2233442 57889999975
No 298
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.90 E-value=7.7e-06 Score=79.26 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=39.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ...++.|.+.....+.++. .+.++||||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 3589999999999999999999976532 2223444444444455554 68999999964
No 299
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.90 E-value=2.6e-07 Score=95.72 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=80.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.++|||.+|+|||||++.|+|.. ....+-+.+| |..... ++...+|.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~-----------------~p~~G~I~i~--G~~i~~-------------~~~~~~r~ 128 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY-----------------DISSGCIRID--GQDISQ-------------VTQASLRS 128 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS-----------------CCSEEEEEET--TEETTS-------------BCHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHcCC-----------------CCCCcEEEEC--CEEccc-------------CCHHHHhc
Confidence 358999999999999999999865 2234556666 554333 23344555
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhh-------hhcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYG-------YNRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a-------~~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.+.+-...++.++.++ .|+...................+++..+. ..+|...+||+.++...||++++
T Consensus 129 ~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~- 207 (306)
T 3nh6_A 129 HIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK- 207 (306)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH-
T ss_pred ceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh-
Confidence 5555554445566666666 35432110000000000001233444433 23667789999999999999997
Q ss_pred HHhCCceeec-CCCCCChhhhh
Q psy9995 475 FVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
+-+|+..- |--+.|+..-.
T Consensus 208 --~p~iLlLDEPts~LD~~~~~ 227 (306)
T 3nh6_A 208 --APGIILLDEATSALDTSNER 227 (306)
T ss_dssp --CCSEEEEECCSSCCCHHHHH
T ss_pred --CCCEEEEECCcccCCHHHHH
Confidence 46777654 44456665433
No 300
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.89 E-value=6e-06 Score=78.69 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=41.4
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
...++|++||.+|||||||+|+|++.. ......|++|.++. .+.++. .+.++||||..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 456899999999999999999998643 23345666665543 334443 45778999974
No 301
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=1.2e-05 Score=76.05 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=38.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee-EEEEcC---CceEEEeCCCCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF-QTLFVD---DELLLCDCPGLVM 379 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~-Qti~~~---~~~~liDtPGl~~ 379 (595)
..++|+++|.+|||||||+|+|++...... ..|-.+..+ ..+.++ ..+.++||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 358999999999999999999997653221 112122222 223443 2478999999864
No 302
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.86 E-value=7.3e-06 Score=88.79 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=44.0
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEec------------------------------CCCCCceeeEEEEc---C
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVS------------------------------ATPGKTKHFQTLFV---D 366 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs------------------------------~tPG~TKh~Qti~~---~ 366 (595)
...++|+++|.+|+|||||+|+|+........ ..+|+|.++....+ +
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 34689999999999999999999654322221 23788988765433 4
Q ss_pred CceEEEeCCCCc
Q psy9995 367 DELLLCDCPGLV 378 (595)
Q Consensus 367 ~~~~liDtPGl~ 378 (595)
..+.++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 578999999975
No 303
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.86 E-value=3.3e-05 Score=75.68 Aligned_cols=124 Identities=19% Similarity=0.181 Sum_probs=79.9
Q ss_pred cccCCCCCCCCcCCCHHHHHHHH--H--H-----Hh----hhhcCe--eeEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAME--R--D-----EF----LQWRRE--LNLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~E--r--~-----~f----~~wrg~--~~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+-|-..+++||+++.+.+...+ . . .| ..+.+. .+.|.||+|... |. .+++ ..+..+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~--~~---~l~~---~~~~~a 86 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLER--FR---SLIP---SYIRDS 86 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTT--CG---GGHH---HHHTTC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchh--hh---hHHH---HHhccc
Confidence 45566788889999988876432 0 0 11 123333 345789999432 11 1122 256789
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCC-----HHHHHHHHHHHhhCCCeEEEEecccCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLT-----RKQRCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~-----~~~~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
|.+++|.|..++.++.+ +..++..+ ..+.|+|||.||+||.. .++...|++ +.+..++.+||+++.
T Consensus 87 ~~~ilv~di~~~~Sf~~--i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~---~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 87 AAAVVVYDITNVNSFQQ--TTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK---ELNVMFIETSAKAGY 161 (216)
T ss_dssp SEEEEEEETTCHHHHHT--HHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHH---HHTCEEEEEBTTTTB
T ss_pred cEEEEEeecchhHHHHH--HHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHH---HhCCeeEEEeCCCCc
Confidence 99999999988876643 33444332 45678999999999954 344444444 447888999999887
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 162 n 162 (216)
T 4dkx_A 162 N 162 (216)
T ss_dssp S
T ss_pred C
Confidence 6
No 304
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.86 E-value=9e-06 Score=76.42 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=40.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++.... ...+|.|.+ +..+.. +..+.++||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFN--MRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEE--EEEEEETTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCcee--EEEEEeCCEEEEEEECCCCH
Confidence 34689999999999999999999975532 233444443 223332 4568899999974
No 305
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.85 E-value=1e-05 Score=77.04 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=40.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee-EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF-QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~-Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... .....|.++..+ ..+.++. .+.++||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 458999999999999999999997653 222334444443 2344443 57899999974
No 306
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.85 E-value=9.4e-06 Score=77.95 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=40.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.. +.....|..+.++. .+.++. .+.++||||..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 35899999999999999999998754 33333444444443 444543 57899999964
No 307
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.84 E-value=3e-05 Score=81.06 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=55.4
Q ss_pred hhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCC
Q psy9995 135 LQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADL 214 (595)
Q Consensus 135 ~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DL 214 (595)
+++.+..+.|+||+|+..+.. .+.+.+|++++|+|+..+.. ...+...+. ..+.++|+||+|+
T Consensus 143 ~~~~~~~~iliDT~Gi~~~~~-----------~v~~~~d~vl~v~d~~~~~~--~~~i~~~i~----~~~~ivvlNK~Dl 205 (337)
T 2qm8_A 143 CEAAGFDVILVETVGVGQSET-----------AVADLTDFFLVLMLPGAGDE--LQGIKKGIF----ELADMIAVNKADD 205 (337)
T ss_dssp HHHTTCCEEEEEECSSSSCHH-----------HHHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEECCST
T ss_pred HhcCCCCEEEEECCCCCcchh-----------hHHhhCCEEEEEEcCCCccc--HHHHHHHHh----ccccEEEEEchhc
Confidence 455788899999999875422 24579999999999854321 000111111 1356888899998
Q ss_pred CCHHH-----HHHHHHHHhh-------CCCeEEEEecccCCC
Q psy9995 215 LTRKQ-----RCYWTKYFNS-------VNVAVAFFSATNIYD 244 (595)
Q Consensus 215 l~~~~-----~~~w~~~~~~-------~gi~vi~~SA~~~~~ 244 (595)
.+... ...+...+.- ...+++++||+++.+
T Consensus 206 ~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~g 247 (337)
T 2qm8_A 206 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKG 247 (337)
T ss_dssp TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBS
T ss_pred cCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCC
Confidence 65322 2222222211 135788999988765
No 308
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.84 E-value=1.5e-05 Score=75.35 Aligned_cols=57 Identities=25% Similarity=0.193 Sum_probs=36.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~---~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++.. .++..+++|.... .+.++. .+.++||||..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 346899999999999999999999765 2344455554422 233443 46699999985
No 309
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.84 E-value=1.2e-05 Score=76.82 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=37.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ...++.|.+.....+.++. .+.++||||..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3589999999999999999999875521 1122223222233445544 68999999974
No 310
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.84 E-value=1.6e-05 Score=76.62 Aligned_cols=57 Identities=25% Similarity=0.274 Sum_probs=32.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee-EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF-QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~-Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ....|-++..+ ..+.++. .+.++||||..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 4689999999999999999999976522 11122221122 2334443 57899999964
No 311
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.83 E-value=1.5e-05 Score=74.77 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=37.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++..... ..++.+.+.. ..+..+. .+.++||||..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~ 67 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSH 67 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGG
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChH
Confidence 45899999999999999999999754211 1122222211 1223332 57899999965
No 312
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.83 E-value=1.3e-05 Score=76.63 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=36.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee-EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF-QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~-Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++..... ...|.++..+ ..+.++. .+.++||||..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcH
Confidence 4799999999999999999999765322 2223333333 2234443 57899999975
No 313
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.83 E-value=6e-06 Score=79.28 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=40.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCccee--EecCCCCCceeeEEEEcCCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKV--SVSATPGKTKHFQTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kv--sVs~tPG~TKh~Qti~~~~~~~liDtPGl~ 378 (595)
...++|+++|.+|||||||+|+|++.... .++..|+++..+ ....+.++||||..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~ 66 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHV 66 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcH
Confidence 34689999999999999999999976521 113445444433 34578999999985
No 314
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.82 E-value=6e-06 Score=93.18 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=44.1
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecC------------------------------CCCCceeeEEEEc---C
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSA------------------------------TPGKTKHFQTLFV---D 366 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~------------------------------tPG~TKh~Qti~~---~ 366 (595)
...++|++||.+|||||||+|+|++........ .+|+|.+.....+ +
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999999764322221 3788887544332 4
Q ss_pred CceEEEeCCCCc
Q psy9995 367 DELLLCDCPGLV 378 (595)
Q Consensus 367 ~~~~liDtPGl~ 378 (595)
..+.++||||+.
T Consensus 245 ~~~~iiDTPG~e 256 (611)
T 3izq_1 245 ANFTIVDAPGHR 256 (611)
T ss_dssp CEEEEEECCSSS
T ss_pred ceEEEEECCCCc
Confidence 578999999984
No 315
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.81 E-value=4.4e-06 Score=78.41 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=71.4
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH---------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEE
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD---------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQ 177 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~---------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~ 177 (595)
..+-|-..++.|||++.+.|...+-. ....+.+..+.+.||||....... ....+...+..+|++|+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYK----LSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------CCCCTTCSEEEETTCCBSSCC----HHHHHHHHGGGEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeeecCCeEEEEECCCCchHHHH----HHHHHHhhcccCCEEEE
Confidence 45667788899999999998865311 112334566789999997532211 12223344567999999
Q ss_pred EEeCC-CCCCCCchHHHHHHHHh--------CCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q psy9995 178 IVDAR-NPLLFRCEDLERYVKEV--------SPHKRNMILLNKADLLTRKQRCYWTKYF 227 (595)
Q Consensus 178 VvDAR-~Pl~~~~~~Le~~lk~v--------~~~K~~ILVlNK~DLl~~~~~~~w~~~~ 227 (595)
|+|+. ++..+ ..+..++..+ ..+.|+++|+||+|+.+......+.+.+
T Consensus 125 v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 125 MVDSTVDPKKL--TTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEETTCCHHHH--HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCCchhH--HHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 99997 44322 1222222221 2478999999999998765444444444
No 316
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.81 E-value=8.6e-06 Score=77.38 Aligned_cols=57 Identities=26% Similarity=0.254 Sum_probs=37.1
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCC--CCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATP--GKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP--G~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|++||.||||||||+|.+++....-++..| |.+....++.++. .+.++||+|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 589999999999999999999975432233333 4333233445543 34688999964
No 317
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.80 E-value=2.6e-05 Score=89.24 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=70.5
Q ss_pred cccCCCCCCCCcCCCHHHHHHH------------------------HHH-------HhhhhcCeeeEEEeCCCcccChhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAM------------------------ERD-------EFLQWRRELNLLQEEDGLVITPYE 156 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~------------------------Er~-------~f~~wrg~~~~L~DT~Gi~~t~~e 156 (595)
.+.|-..++.||||+.+.|... ++. ....|.+..+.|+||||...
T Consensus 14 ~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d---- 89 (691)
T 1dar_A 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD---- 89 (691)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT----
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc----
Confidence 4556667777888887777632 111 23467788899999999743
Q ss_pred hhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH
Q psy9995 157 KNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR 217 (595)
Q Consensus 157 rn~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~ 217 (595)
+.....+.+..+|.+|+|+|+.++.......+...+. ..+.|+++|+||+|+...
T Consensus 90 ----f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~--~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 ----FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE--KYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ----CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH--HTTCCEEEEEECTTSTTC
T ss_pred ----hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH--HcCCCEEEEEECCCcccC
Confidence 2334556788999999999999877654444444444 347899999999999754
No 318
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.78 E-value=1.1e-05 Score=76.55 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=37.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee-EEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF-QTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~-Qti~~---~~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++.... ....|.++..+ ..+.+ .-.+.++||||..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD 83 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence 4689999999999999999999976533 22122222222 12222 2346899999975
No 319
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=2.1e-05 Score=76.64 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=76.3
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeee--EEEeCCCcccChhhhhHHHHHHHHH-HH
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELN--LLQEEDGLVITPYEKNLDFWRQLWR-VI 169 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~--~L~DT~Gi~~t~~ern~e~~rql~~-vi 169 (595)
-.+.|-..|++||+++.+.+...+.. ....+.+..+ .+.||+|... . . +.+.. ..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~--~---~---~~l~~~~~ 109 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG--E---N---EWLHDHCM 109 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH--H---H---HHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc--h---h---hhHHHHHH
Confidence 34667789999999999998743221 1123444443 4678887421 0 1 11222 23
Q ss_pred hhcCeEEEEEeCCCCCCCCch-HHHHHHHHh--CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEeccc
Q psy9995 170 ERSDVIVQIVDARNPLLFRCE-DLERYVKEV--SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATN 241 (595)
Q Consensus 170 e~sDvVl~VvDAR~Pl~~~~~-~Le~~lk~v--~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~ 241 (595)
..+|.+|+|+|..++.++... .+...+... ..+.|+|||.||+||... ++...|.. ..+..++.+||++
T Consensus 110 ~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~---~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV---VFDCKFIETSAAV 186 (211)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH---HHTCEEEECBTTT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH---HcCCEEEEEeCCC
Confidence 568999999999876554321 122223221 136899999999999642 22233333 3367889999998
Q ss_pred CCC
Q psy9995 242 IYD 244 (595)
Q Consensus 242 ~~~ 244 (595)
+.+
T Consensus 187 g~~ 189 (211)
T 2g3y_A 187 QHN 189 (211)
T ss_dssp TBS
T ss_pred CCC
Confidence 765
No 320
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.77 E-value=1.8e-05 Score=74.22 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=35.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEec-CCCCCceeeEEEEc--------CCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVS-ATPGKTKHFQTLFV--------DDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs-~tPG~TKh~Qti~~--------~~~~~liDtPGl~ 378 (595)
++|++||.+|||||||+|.|++.....++ ..|..+.++....+ .-.+.++||||..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 68999999999999999999986322222 23333444443322 3367899999964
No 321
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.77 E-value=2.3e-06 Score=96.26 Aligned_cols=136 Identities=23% Similarity=0.265 Sum_probs=85.1
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|.. ..+.+-+.+| |..... ++.+.+|.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~-----------------~p~~G~i~~~--g~~i~~-------------~~~~~~r~ 429 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY-----------------DVDRGQILVD--GIDIRK-------------IKRSSLRS 429 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS-----------------CCSEEEEEET--TEEGGG-------------SCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc-----------------CCCCeEEEEC--CEEhhh-------------CCHHHHHh
Confidence 468999999999999999999865 2234556667 654332 34455666
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.+.+-...++.++.++ .|+.......+..........++++..+.. .+|...+|||.++...||.+++
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~- 508 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA- 508 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT-
T ss_pred ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc-
Confidence 6666666556677777777 455321111111111122234555555543 2556789999999999999996
Q ss_pred HHhCCceeecCC-CCCChhh
Q psy9995 475 FVNGHLLYCQAP-PGVPQEK 493 (595)
Q Consensus 475 ~~~GKL~~~~~P-P~~~~~~ 493 (595)
+-+++..-.| -+.|+..
T Consensus 509 --~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 509 --NPKILILDEATSNVDTKT 526 (598)
T ss_dssp --CCSEEEECCCCTTCCHHH
T ss_pred --CCCEEEEECCccCCCHHH
Confidence 4677655444 4566543
No 322
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.76 E-value=4.2e-06 Score=92.27 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=83.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcC
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSD 173 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sD 173 (595)
..+.|-..++.||||+.+.|....-. ....|.+..+.|+||||... |..+ ..+.+..+|
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~--f~~~------~~~~~~~aD 76 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAA--FTSM------RARGAQATD 76 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC--CTTS------BCSSSBSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH--HHHH------HHHHHhhCC
Confidence 34555667888999999999865432 23457778889999999532 2111 123467899
Q ss_pred eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH--HHHHHHH-H--HH-hhC--CCeEEEEecccCCCC
Q psy9995 174 VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR--KQRCYWT-K--YF-NSV--NVAVAFFSATNIYDD 245 (595)
Q Consensus 174 vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~--~~~~~w~-~--~~-~~~--gi~vi~~SA~~~~~~ 245 (595)
++|+|+|+.++..........++. ..+.|+|+++||+|+... +...... + .+ ... ..+++++||+++.+.
T Consensus 77 ~aILVVda~~g~~~qT~e~l~~~~--~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 77 IVVLVVAADDGVMPQTIEAIQHAK--AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp SEEEEEETTTBSCTTTHHHHHHHH--HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred EEEEEeecccCccHHHHHHHHHHH--hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 999999999866544444334444 246899999999999642 1111000 0 00 111 257899999998874
No 323
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.76 E-value=4.1e-06 Score=94.24 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEec------------------------------CCCCCceeeEEEEc---C
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVS------------------------------ATPGKTKHFQTLFV---D 366 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs------------------------------~tPG~TKh~Qti~~---~ 366 (595)
...++|++||.+|+|||||+|+|++.....++ ..+|+|.++....+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45689999999999999999999753222211 15788888765443 3
Q ss_pred CceEEEeCCCCc
Q psy9995 367 DELLLCDCPGLV 378 (595)
Q Consensus 367 ~~~~liDtPGl~ 378 (595)
..+.|+||||..
T Consensus 255 ~~i~iiDTPGh~ 266 (592)
T 3mca_A 255 KIYEIGDAPGHR 266 (592)
T ss_dssp ----CCEEESSS
T ss_pred eEEEEEECCChH
Confidence 578999999975
No 324
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.75 E-value=1.4e-05 Score=80.19 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=73.0
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHh--
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIE-- 170 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie-- 170 (595)
-.+-|-..++.||||+.|.|...+.. ....|.+..+.|+||||+..... ......+.+++.+.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~-~~~~~~~~i~~~l~~~ 115 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY-VNHQALELIKGFLVNR 115 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE-ECHHHHHHHHHHTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc-chHHHHHHHHHHHhcC
Confidence 34566778889999999999875531 23457788899999999865432 23345566666553
Q ss_pred hcCeEEEEEeCCCCCCC-CchHHHHHHHHhCC---CCcEEEEEeCCCCCCH
Q psy9995 171 RSDVIVQIVDARNPLLF-RCEDLERYVKEVSP---HKRNMILLNKADLLTR 217 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~-~~~~Le~~lk~v~~---~K~~ILVlNK~DLl~~ 217 (595)
.+|+||+|+|+..+-.. ....+.+.+..... .+|+++|+||+|+.++
T Consensus 116 ~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 116 TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 68999999887554322 12234444443211 2589999999999643
No 325
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.75 E-value=2.4e-05 Score=87.16 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=59.3
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
..+.|++..+.|+||||-.+ |.-++.+++.-+|-+|+||||.......-..+.+++. ..+.|+|+++||+
T Consensus 93 ~~~~~~~~~iNlIDTPGHvD--------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~--~~~lp~i~fINK~ 162 (548)
T 3vqt_A 93 MQFPYRDRVVNLLDTPGHQD--------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR--MRATPVMTFVNKM 162 (548)
T ss_dssp EEEEETTEEEEEECCCCGGG--------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH--HTTCCEEEEEECT
T ss_pred EEEEECCEEEEEEeCCCcHH--------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH--HhCCceEEEEecc
Confidence 46689999999999999653 3445667889999999999998877655555555555 4578999999999
Q ss_pred CCCCH
Q psy9995 213 DLLTR 217 (595)
Q Consensus 213 DLl~~ 217 (595)
|....
T Consensus 163 Dr~~a 167 (548)
T 3vqt_A 163 DREAL 167 (548)
T ss_dssp TSCCC
T ss_pred cchhc
Confidence 98643
No 326
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.74 E-value=2.4e-05 Score=74.77 Aligned_cols=56 Identities=21% Similarity=0.188 Sum_probs=38.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC-C--ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD-D--ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~-~--~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... ++..+++|..... +.++ . .+.++||||..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 468999999999999999999986542 3344455544332 2332 2 34599999985
No 327
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.74 E-value=2.6e-05 Score=73.39 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=37.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLVM 379 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~~ 379 (595)
..++|+++|.+|||||||+|+|++... .+..+.++... ..+.++. .+.++||||...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 458999999999999999999997652 23333333321 2233332 467899999753
No 328
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.73 E-value=2.1e-05 Score=74.55 Aligned_cols=57 Identities=21% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCC--CceeeEEEEc----CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG--KTKHFQTLFV----DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG--~TKh~Qti~~----~~~~~liDtPGl~ 378 (595)
...++|++||.+|||||||+|.|.+.... ..++| .|.......+ .-.+.++||||..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSP--NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQM 80 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCG--GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCC--cceeeeccccceeeeeccCCCeeEEEEEECCCCH
Confidence 34689999999999999999999885322 23333 2333222222 2468999999964
No 329
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.73 E-value=2.5e-05 Score=72.22 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=36.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++... ......++... ..+.++. .+.++||||..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 58999999999999999999986542 12222222221 1233332 45699999985
No 330
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.71 E-value=1.6e-05 Score=86.95 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=43.1
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
...++|++||.||||||||+|+|++...+...+|.|.+. ..+.. +-.+.++||||..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~--~~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEESSSCEEEEEEECCCG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeE--EEEEeCCEEEEEEECCCcH
Confidence 346899999999999999999999887555555555433 23333 4578999999964
No 331
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.71 E-value=1.2e-05 Score=84.47 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=58.1
Q ss_pred eeeEEEeCCCcccCh-----hhhhHHHHHHHHHHH-hhcCeEEEEEeCCCCCCCCchHHHHHHHHh-CCCCcEEEEEeCC
Q psy9995 140 ELNLLQEEDGLVITP-----YEKNLDFWRQLWRVI-ERSDVIVQIVDARNPLLFRCEDLERYVKEV-SPHKRNMILLNKA 212 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~-----~ern~e~~rql~~vi-e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v-~~~K~~ILVlNK~ 212 (595)
..+.|+||||+.... ......+...+...+ ...|+|++|+|+..++... +...+++.+ ..++|+|+|+||+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~--~~~~i~~~~~~~~~~~i~V~NK~ 207 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS--DALKVAKEVDPQGQRTIGVITKL 207 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC--HHHHHHHHHCTTCTTEEEEEECG
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh--HHHHHHHHhCcCCCceEEEeccc
Confidence 467899999987532 111112222333344 3567888899987655432 222344444 3468999999999
Q ss_pred CCCCHHH-HHHHHHH-Hh--hCCC-eEEEEecccCCC
Q psy9995 213 DLLTRKQ-RCYWTKY-FN--SVNV-AVAFFSATNIYD 244 (595)
Q Consensus 213 DLl~~~~-~~~w~~~-~~--~~gi-~vi~~SA~~~~~ 244 (595)
|+++... ...+.+. .. ..|+ .++.+||+++.+
T Consensus 208 Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~ 244 (353)
T 2x2e_A 208 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG 244 (353)
T ss_dssp GGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHT
T ss_pred cccCcchhHHHHHhCCcccccCCceEEEeCCcccccc
Confidence 9986533 1222210 00 0122 456688877655
No 332
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.70 E-value=1.4e-05 Score=87.40 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=41.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc------------------------------eeEecCCCCCceeeEEEEc---CC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK------------------------------KVSVSATPGKTKHFQTLFV---DD 367 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~------------------------------kvsVs~tPG~TKh~Qti~~---~~ 367 (595)
..++|+++|.+|+|||||+|+|++.. .......+|+|.+.....+ +.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 35899999999999999999997541 1122344788887655443 45
Q ss_pred ceEEEeCCCCc
Q psy9995 368 ELLLCDCPGLV 378 (595)
Q Consensus 368 ~~~liDtPGl~ 378 (595)
.+.++||||..
T Consensus 112 ~~~iiDTPG~~ 122 (483)
T 3p26_A 112 NFTIVDAPGHR 122 (483)
T ss_dssp EEEEECCCCCG
T ss_pred eEEEEECCCcH
Confidence 78999999984
No 333
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.70 E-value=4.7e-05 Score=72.19 Aligned_cols=127 Identities=12% Similarity=0.047 Sum_probs=77.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH--------------HhhhhcCeee--EEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD--------------EFLQWRRELN--LLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~--------------~f~~wrg~~~--~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
.+.|-..|++|||++.+.+.+.+.. ....+.+..+ .+.||+|.... ++. +++ .....
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~--~~~--~~~---~~~~~ 80 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE--NEW--LHD---HCMQV 80 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC------CT--TGG---GHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch--hhh--HHH---hhccc
Confidence 4667789999999999999864321 1123444443 45788884321 111 111 13456
Q ss_pred cCeEEEEEeCCCCCCCCch-HHHHHHHHh--CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCC
Q psy9995 172 SDVIVQIVDARNPLLFRCE-DLERYVKEV--SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~-~Le~~lk~v--~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
+|.+++|+|..++.++... .+...+... ..+.|+|+|.||+||... ++...|. ...+..++.+||+++.
T Consensus 81 ~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a---~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXA---VVFDXKFIETSAAVQH 157 (192)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH---HHTTCEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHH---HHhCCceEEeccccCC
Confidence 8999999999877654321 122223322 236899999999999642 2222232 2346788899999987
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 158 ~ 158 (192)
T 2cjw_A 158 N 158 (192)
T ss_dssp S
T ss_pred C
Confidence 6
No 334
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.69 E-value=2.9e-05 Score=73.64 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=38.9
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|.|++..... ..++.|.+.....+.++. .+.++||||..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCch
Confidence 4789999999999999999999865321 223334433334455543 45679999965
No 335
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.69 E-value=1.4e-05 Score=76.65 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=37.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-EecCCCCCceeeEEEEcC-------------CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVD-------------DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-sVs~tPG~TKh~Qti~~~-------------~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||||+|++.... ...++.|.+-....+.++ ..+.|+||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH
Confidence 4589999999999999999999975421 111222221111122222 358999999954
No 336
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.68 E-value=1.9e-05 Score=74.33 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=37.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCce-eeE-EEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK-HFQ-TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TK-h~Q-ti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... ....+.++. .+. .+.++. .+.++||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 458999999999999999999997652 222222222 222 223332 35899999964
No 337
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.66 E-value=5.7e-05 Score=80.10 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=50.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH----Hhhh------------------------------hcCeeeEEEeCCCcccCh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD----EFLQ------------------------------WRRELNLLQEEDGLVITP 154 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~----~f~~------------------------------wrg~~~~L~DT~Gi~~t~ 154 (595)
+-|-..||.||||++|.|.+..-. .|.. |.+..+.|+||||+....
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a 83 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGA 83 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccc
Confidence 346678999999999999886410 0111 234568899999987532
Q ss_pred hhhhHHHHHHHHHHHhhcCeEEEEEeCCC
Q psy9995 155 YEKNLDFWRQLWRVIERSDVIVQIVDARN 183 (595)
Q Consensus 155 ~ern~e~~rql~~vie~sDvVl~VvDAR~ 183 (595)
.. ...+.++.+..+..+|+|++|+|+.+
T Consensus 84 ~~-~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 84 HK-GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CS-SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cc-cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 11 11123556677899999999999974
No 338
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.65 E-value=9.3e-05 Score=84.83 Aligned_cols=74 Identities=18% Similarity=0.110 Sum_probs=53.8
Q ss_pred hhhhcC-------eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEE
Q psy9995 134 FLQWRR-------ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNM 206 (595)
Q Consensus 134 f~~wrg-------~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~I 206 (595)
.+.|.+ ..+.|+||||... +.....+.+..+|.+|+|+|+.+........+...+. ..+.|++
T Consensus 69 ~~~~~~~~~~~~~~~i~liDTPG~~d--------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~--~~~ip~i 138 (704)
T 2rdo_7 69 TAFWSGMAKQYEPHRINIIDTPGHVD--------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN--KYKVPRI 138 (704)
T ss_pred EEEECCccccCCceeEEEEeCCCccc--------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHH--HcCCCEE
Confidence 356776 7889999999642 2344556788999999999999876544333333333 3478999
Q ss_pred EEEeCCCCCCH
Q psy9995 207 ILLNKADLLTR 217 (595)
Q Consensus 207 LVlNK~DLl~~ 217 (595)
+|+||+|+...
T Consensus 139 lviNKiD~~~~ 149 (704)
T 2rdo_7 139 AFVNKMDRMGA 149 (704)
T ss_pred EEEeCCCcccc
Confidence 99999999754
No 339
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.64 E-value=3.6e-05 Score=82.90 Aligned_cols=55 Identities=36% Similarity=0.602 Sum_probs=45.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC--CceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD--DELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~--~~~~liDtPGl~ 378 (595)
-.|+|||+||||||||||+|++.. ..++..|++|.+.. .+..+ ..+.++||||+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccc
Confidence 358999999999999999999875 47888999887654 34443 568999999986
No 340
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.64 E-value=3.4e-05 Score=72.03 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=37.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee-EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF-QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~-Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... .....|.....+ ..+.++. .+.++||||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 458999999999999999999997542 111122221112 1233332 57899999974
No 341
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.63 E-value=4.4e-05 Score=74.35 Aligned_cols=58 Identities=26% Similarity=0.267 Sum_probs=38.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCC--CCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP--GKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP--G~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
..++|++||.||||||||+|.+++.....++..| |.+....++.++. .+.++||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 3589999999999999999999975432233333 4333233455543 35789999964
No 342
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.61 E-value=3.6e-05 Score=89.89 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred cCCcccCCCCCCCCcCCCHHHHHHHH--------------------HH---------Hhhhhc----------------C
Q psy9995 105 KRELLKIPRRPKWDKNTTAEQLQAME--------------------RD---------EFLQWR----------------R 139 (595)
Q Consensus 105 ~~~~l~iprRPnw~kst~~n~L~~~E--------------------r~---------~f~~wr----------------g 139 (595)
+.-.+.|-..++.||+|+.+.|.... ++ ..+.|. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 33457788889999999999988652 11 112354 6
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCC
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLL 215 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl 215 (595)
..+.|+||||... | .....+.+..+|.+|+|+|+.++..+....+...+. ..+.|+|+|+||+|+.
T Consensus 98 ~~i~liDTPG~~d--f------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~--~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD--F------SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL--GERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS--S------CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH--HTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh--h------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--HcCCCeEEEEECCCcc
Confidence 7788999999754 2 223445778999999999999887655444333332 3578999999999986
No 343
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=5.7e-05 Score=71.01 Aligned_cols=57 Identities=28% Similarity=0.382 Sum_probs=37.5
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
...++|++||.+|||||||+|.+++..-.. ..++.+ .....+.++. .+.++||||..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCCh
Confidence 456999999999999999999998754221 122211 1112344433 45679999975
No 344
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.60 E-value=2.2e-06 Score=96.24 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=82.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|.. ....+-+.+| |..... ++.+.++.
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~-----------------~~~~G~i~i~--g~~i~~-------------~~~~~~r~ 417 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI-----------------DPERGRVEVD--ELDVRT-------------VKLKDLRG 417 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS-----------------CCSEEEEEES--SSBGGG-------------BCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc-----------------cCCCcEEEEC--CEEccc-------------CCHHHHHh
Confidence 368999999999999999999865 2234566777 654333 34455666
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCCCCCCCCCHHHHHHHhh-------hhcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGEDPNRPPFSEELCNAYG-------YNRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~~~~~~~~~~e~L~~~a-------~~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.+.+-...++.++.++. |+.......+.....+.....+++..+. ..+|...+|||.++...||++++
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~- 496 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK- 496 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT-
T ss_pred heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc-
Confidence 66666655566677777773 4432110000000000011233443332 23677789999999999999986
Q ss_pred HHhCCceeecCC-CCCChhhhh
Q psy9995 475 FVNGHLLYCQAP-PGVPQEKYH 495 (595)
Q Consensus 475 ~~~GKL~~~~~P-P~~~~~~f~ 495 (595)
+-+++..-.| -+.|+..-.
T Consensus 497 --~p~illlDEpts~LD~~~~~ 516 (587)
T 3qf4_A 497 --KPKVLILDDCTSSVDPITEK 516 (587)
T ss_dssp --CCSEEEEESCCTTSCHHHHH
T ss_pred --CCCEEEEECCcccCCHHHHH
Confidence 4677655444 456654333
No 345
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=4.6e-05 Score=71.51 Aligned_cols=56 Identities=20% Similarity=0.111 Sum_probs=38.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++..- ....+.++... ..+.++. .+.++||||..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~ 77 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCc
Confidence 358999999999999999999997642 22333333222 2334432 57899999975
No 346
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.59 E-value=7.7e-06 Score=91.62 Aligned_cols=136 Identities=23% Similarity=0.261 Sum_probs=74.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|.. ..+.+-+.+| |..... ++...++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~-----------------~p~~G~i~~~--g~~~~~-------------~~~~~~~~ 417 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY-----------------DVDSGSICLD--GHDVRD-------------YKLTNLRR 417 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-----------------CCCCCEEEEC--CEEhhh-------------CCHHHHhc
Confidence 358999999999999999999865 2234455556 533221 22333444
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCC-CCCCCCCCCCCCCCCCHHHHHHHhh-------hhcCccccCCCCCHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGI-MITQPDEGEDPNRPPFSEELCNAYG-------YNRGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i-~~~~p~~~~~~~~~~~~~e~L~~~a-------~~rG~~~~gG~pD~~rAAr~iLk 473 (595)
.++.+.+-...++.++.++ .|+. ......+.+...+....++++..++ ..+|...+|||.++...||.+++
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 4444444444455555555 3432 1000000000000111233433332 23567789999999999999987
Q ss_pred HHHhCCceeec-CCCCCChhh
Q psy9995 474 DFVNGHLLYCQ-APPGVPQEK 493 (595)
Q Consensus 474 D~~~GKL~~~~-~PP~~~~~~ 493 (595)
+-+++..- |--+.|+..
T Consensus 498 ---~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 498 ---DAPVLILDEATSALDTES 515 (582)
T ss_pred ---CCCEEEEECccccCCHHH
Confidence 45676554 434566543
No 347
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.59 E-value=4.6e-05 Score=72.14 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=38.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|++||.+|||||||+|.|++..... ..++.|.+-....+.++. .+.++||||..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~ 89 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCc
Confidence 5899999999999999999999865321 223333322233455543 34569999975
No 348
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.59 E-value=1.9e-05 Score=72.83 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=31.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCcee-eE-EEEc---CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-FQ-TLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh-~Q-ti~~---~~~~~liDtPGl~ 378 (595)
.++|+++|.+|||||||+|+|++... ....++++.. +. .+.+ .-.+.++||||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-C
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence 58999999999999999999997542 1222222221 11 1112 2245699999975
No 349
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.58 E-value=5e-05 Score=72.47 Aligned_cols=56 Identities=21% Similarity=0.140 Sum_probs=38.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceee--EEEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF--QTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~--Qti~~~~---~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|.|++..- ....+.++... ..+.++. .+.++||||..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcH
Confidence 358999999999999999999997542 22223333221 2233443 67899999985
No 350
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.57 E-value=2.6e-06 Score=95.45 Aligned_cols=136 Identities=24% Similarity=0.268 Sum_probs=78.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|.. ....+-+.+| |..... ++.+.++.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~-----------------~p~~G~i~~~--g~~~~~-------------~~~~~~r~ 415 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY-----------------DVTSGQILID--GHNIKD-------------FLTGSLRN 415 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS-----------------CCSEEEEEET--TEEGGG-------------SCHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHhcCC-----------------CCCCcEEEEC--CEEhhh-------------CCHHHHhh
Confidence 368999999999999999999865 2233455666 543322 23444555
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.+.+....++.++.++ .|+.+.....+...........+++..+.. .+|...+|||.++...||.+++
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~- 494 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN- 494 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH-
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc-
Confidence 5555555455566666666 344321100000000000012233333322 3566789999999999999986
Q ss_pred HHhCCceeec-CCCCCChhh
Q psy9995 475 FVNGHLLYCQ-APPGVPQEK 493 (595)
Q Consensus 475 ~~~GKL~~~~-~PP~~~~~~ 493 (595)
+-+++..- |--+.|+..
T Consensus 495 --~p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 495 --NPPILILDEATSALDLES 512 (578)
T ss_dssp --CCSEEEEESTTTTCCHHH
T ss_pred --CCCEEEEECccccCCHHH
Confidence 46776554 444567653
No 351
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.57 E-value=8e-06 Score=90.73 Aligned_cols=56 Identities=21% Similarity=0.441 Sum_probs=45.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc----CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV----DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~----~~~~~liDtPGl~ 378 (595)
..+|+++|.+|+|||||+|+|++.. +.....||+|.|+....+ +..+.++||||..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 4679999999999999999999765 445578999999754332 3468999999974
No 352
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.56 E-value=5.2e-05 Score=78.85 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=38.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc-CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV-DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~-~~~~~liDtPGl~ 378 (595)
..++|+|+|.+|||||||+|+|++...+... |....++..+.. +..+.++||||..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--EETTEEEEEEEETTEEEEEEECC---
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc--cccceEEEEEecCcEEEEEEECCCCH
Confidence 4589999999999999999999987754443 322222333333 3468999999953
No 353
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.56 E-value=0.00015 Score=82.63 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=52.9
Q ss_pred hhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCC
Q psy9995 134 FLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKAD 213 (595)
Q Consensus 134 f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~D 213 (595)
.+.|....+.|+||||... +.....+.+..+|.+++|+|+.+.+......+.+.+. ..+.|+|+|+||+|
T Consensus 68 ~~~~~~~~~nliDTpG~~~--------f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~--~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 68 PLLFRGHRVFLLDAPGYGD--------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAE--RLGLPRMVVVTKLD 137 (665)
T ss_dssp EEEETTEEEEEEECCCSGG--------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH--HTTCCEEEEEECGG
T ss_pred EEeeCCEEEEEEeCCCccc--------hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHH--HccCCEEEEecCCc
Confidence 3457788889999999642 2244566788999999999998776544444444444 24789999999999
Q ss_pred CC
Q psy9995 214 LL 215 (595)
Q Consensus 214 Ll 215 (595)
+.
T Consensus 138 ~~ 139 (665)
T 2dy1_A 138 KG 139 (665)
T ss_dssp GC
T ss_pred hh
Confidence 87
No 354
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.55 E-value=4e-05 Score=71.41 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=23.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..++|++||.+|||||||+|.|.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 35899999999999999999998754
No 355
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.54 E-value=6.2e-05 Score=72.30 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=38.3
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcCC---ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~~---~~~liDtPGl~ 378 (595)
..++|++||.+|||||||+|.|++... .....|.....+. .+.++. .+.++||||..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 458999999999999999999997542 2222232222221 233332 57899999974
No 356
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.54 E-value=3.9e-06 Score=102.24 Aligned_cols=135 Identities=23% Similarity=0.268 Sum_probs=86.0
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|.. ..+.+-+.+| |..... ++...+|.
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~-----------------~~~~G~i~i~--g~~i~~-------------~~~~~~r~ 464 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY-----------------DPLDGMVSID--GQDIRT-------------INVRYLRE 464 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS-----------------CCSEEEEEET--TEEGGG-------------SCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------------CCCCeEEEEC--CEEHHh-------------CCHHHHHh
Confidence 468999999999999999999866 2344566777 654333 34566777
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILKD 474 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLkD 474 (595)
.++.|.+-...++.++.++ .||.......+.....+....++++..+.. .+|...+|||.++...||++++
T Consensus 465 ~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~- 543 (1284)
T 3g5u_A 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR- 543 (1284)
T ss_dssp HEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH-
T ss_pred heEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc-
Confidence 7777766666777777777 455421110000000001123455555543 2677789999999999999986
Q ss_pred HHhCCceeecCC-CCCChh
Q psy9995 475 FVNGHLLYCQAP-PGVPQE 492 (595)
Q Consensus 475 ~~~GKL~~~~~P-P~~~~~ 492 (595)
+-+++..--| -+.|+.
T Consensus 544 --~p~iliLDEpts~LD~~ 560 (1284)
T 3g5u_A 544 --NPKILLLDEATSALDTE 560 (1284)
T ss_dssp --CCSEEEEESTTCSSCHH
T ss_pred --CCCEEEEECCCCCCCHH
Confidence 5677655444 446654
No 357
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.53 E-value=9.4e-05 Score=85.17 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.7
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeE
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVS 349 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvs 349 (595)
...+|++||.+|+|||||||+|+|.....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP 78 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLP 78 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccC
Confidence 34689999999999999999999976433
No 358
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.53 E-value=3.7e-05 Score=81.15 Aligned_cols=58 Identities=28% Similarity=0.325 Sum_probs=31.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCC------CCce--eeEEEEc--C---CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP------GKTK--HFQTLFV--D---DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP------G~TK--h~Qti~~--~---~~~~liDtPGl~ 378 (595)
..++|++||.+|||||||+|+|++......+..| +.|. .+..+.+ + ..+.++||||+.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 3588999999999999999999886554433322 2333 2322222 1 257899999984
No 359
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.51 E-value=0.00015 Score=76.70 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=49.9
Q ss_pred ccCCCCCCCCcCCCHHHHHHHHHH--H-----------hhhhcC-----------------eeeEEEeCCCcccChhhhh
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAMERD--E-----------FLQWRR-----------------ELNLLQEEDGLVITPYEKN 158 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~Er~--~-----------f~~wrg-----------------~~~~L~DT~Gi~~t~~ern 158 (595)
+-|-..||+||||++|.|.+..-. . ...|.+ ..+.|+||||+.....+ .
T Consensus 5 I~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~-~ 83 (363)
T 1jal_A 5 CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK-G 83 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH-H
T ss_pred EEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc-c
Confidence 456689999999999999974411 0 112222 45889999998753211 1
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCC
Q psy9995 159 LDFWRQLWRVIERSDVIVQIVDARN 183 (595)
Q Consensus 159 ~e~~rql~~vie~sDvVl~VvDAR~ 183 (595)
..+..+.+..+.++|+|++|+|+.+
T Consensus 84 ~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 84 EGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp GGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred chHHHHHHHHHHhcCeEEEEEecCC
Confidence 1123455667899999999999975
No 360
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.49 E-value=7.5e-05 Score=78.35 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=22.2
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.+|++||.+|||||||+|+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999854
No 361
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.49 E-value=0.00011 Score=81.36 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeE------EEEc-----CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQ------TLFV-----DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Q------ti~~-----~~~~~liDtPGl~ 378 (595)
...++|++||.||||||||+|+|++... ....+|.|.+-... .+.+ ...+.++||||..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e 109 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE 109 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHH
Confidence 4569999999999999999999997652 12233444332211 1111 3468999999953
No 362
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.48 E-value=5.5e-05 Score=79.82 Aligned_cols=134 Identities=15% Similarity=0.081 Sum_probs=66.0
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHH---------------H-------HhhhhcCe--eeEEEeCCCcccChh-----hhh
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMER---------------D-------EFLQWRRE--LNLLQEEDGLVITPY-----EKN 158 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er---------------~-------~f~~wrg~--~~~L~DT~Gi~~t~~-----ern 158 (595)
.+.|-..++.||||+.+.|..... . ...++.+. .+.++||+|+-.... ...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i 118 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 118 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCT
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHH
Confidence 456778888888888888643210 0 11233443 467899999843221 111
Q ss_pred -HHHHHHHHHHHh-------------hcCeEEEEEeC-CCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHH-
Q psy9995 159 -LDFWRQLWRVIE-------------RSDVIVQIVDA-RNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY- 222 (595)
Q Consensus 159 -~e~~rql~~vie-------------~sDvVl~VvDA-R~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~- 222 (595)
..+..+....+. ++|++|+++|. +.++. ..++ .+++.+..+.|+|+|+||+|+.+..++..
T Consensus 119 ~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~--~~d~-~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~ 195 (361)
T 2qag_A 119 ISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK--PLDV-AFMKAIHNKVNIVPVIAKADTLTLKERERL 195 (361)
T ss_dssp HHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCC--HHHH-HHHHHTCS-SCEEEEEECCSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcc--hhHH-HHHHHhccCCCEEEEEECCCCCCHHHHHHH
Confidence 111111112222 23578888875 44443 2222 44555566789999999999998766543
Q ss_pred ---HHHHHhhCCCeEEEEecccCCC
Q psy9995 223 ---WTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 223 ---w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
..+++...+++++.+||+++.+
T Consensus 196 k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 196 KKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp HHHHHHHTTCC-CCSCCCC------
T ss_pred HHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 3334455578888999987654
No 363
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.48 E-value=7.3e-06 Score=91.83 Aligned_cols=136 Identities=23% Similarity=0.337 Sum_probs=75.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|... .+.+-+.+| |..... ++...++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~~-----------------p~~G~i~~~--g~~~~~-------------~~~~~~~~ 417 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFYD-----------------IDEGHILMD--GHDLRE-------------YTLASLRN 417 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTC-----------------CSEEEEEET--TEETTT-------------BCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhhccC-----------------CCCCeEEEC--CEEccc-------------cCHHHHHh
Confidence 3689999999999999999998652 223445556 543222 22334444
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCC-CCCCCCCCCCCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGI-MITQPDEGEDPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYILK 473 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i-~~~~p~~~~~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iLk 473 (595)
.++.+.+-...++.++.++ .|+. ......+.+...+....++++..++. .+|...+|||.++...||.+++
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 4444444334455556665 3432 10000000000001112344444321 2567789999999999999987
Q ss_pred HHHhCCceeec-CCCCCChhh
Q psy9995 474 DFVNGHLLYCQ-APPGVPQEK 493 (595)
Q Consensus 474 D~~~GKL~~~~-~PP~~~~~~ 493 (595)
+-+++..- |--+.|+..
T Consensus 498 ---~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 498 ---DSPILILDEATSALDTES 515 (582)
T ss_dssp ---CCSEEEEETTTSSCCHHH
T ss_pred ---CCCEEEEECccccCCHHH
Confidence 45676554 444566544
No 364
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.47 E-value=2.2e-05 Score=86.43 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=45.1
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
+..+|+++|.+|+|||||+|+|++.. +..+..+|+|.++....+ +..+.++||||..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe 62 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcH
Confidence 34679999999999999999998754 555667899988654333 4578999999975
No 365
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.47 E-value=3.9e-05 Score=83.33 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=39.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCc---------------c--eeEecCCC-CCceeeEEEE------c----CCceEEEe
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNA---------------K--KVSVSATP-GKTKHFQTLF------V----DDELLLCD 373 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~---------------~--kvsVs~tP-G~TKh~Qti~------~----~~~~~liD 373 (595)
...|+|+|.+|+|||||+|.|++. + .++++++. .+|+.+.... . +..++++|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 467899999999999999999964 1 23333221 1344433211 1 13589999
Q ss_pred CCCCccCC
Q psy9995 374 CPGLVMPS 381 (595)
Q Consensus 374 tPGl~~p~ 381 (595)
|||+..+.
T Consensus 147 TeG~~~~~ 154 (447)
T 3q5d_A 147 TQGTFDSQ 154 (447)
T ss_dssp EECCCSSH
T ss_pred CCcccccc
Confidence 99997664
No 366
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.46 E-value=5.7e-05 Score=72.88 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=37.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE-EEEcC---CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ-TLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q-ti~~~---~~~~liDtPGl~ 378 (595)
..++|++||.+|||||||+|+|++..-. ....|.++-.+. .+.++ -.+.++||||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 4589999999999999999999976522 111222222222 22333 257899999965
No 367
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.43 E-value=0.00021 Score=70.56 Aligned_cols=75 Identities=20% Similarity=0.107 Sum_probs=46.0
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHH----HH-hCCCCcEEEEEeCCCC
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYV----KE-VSPHKRNMILLNKADL 214 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~l----k~-v~~~K~~ILVlNK~DL 214 (595)
..+.|+||+|..... ..+ .+.+.+...+.. ++||.|+|+...... .++...+ .. ...+.|.++|+||+|+
T Consensus 109 ~d~iiiDtpG~~~~~-~~~-~l~~~~~~~~~~-~~iv~vvD~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 109 NDYVLIDTPGQMETF-LFH-EFGVRLMENLPY-PLVVYISDPEILKKP--NDYCFVRFFALLIDLRLGATTIPALNKVDL 183 (262)
T ss_dssp CSEEEEECCSSHHHH-HHS-HHHHHHHHTSSS-CEEEEEECGGGCCSH--HHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred CCEEEEeCCCccchh-hhh-hhHHHHHHHHhh-ceEEeccchhhhcCH--HHHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence 468899999975422 111 124455556666 999999998654332 1221110 00 0235799999999999
Q ss_pred CCHHH
Q psy9995 215 LTRKQ 219 (595)
Q Consensus 215 l~~~~ 219 (595)
.+..+
T Consensus 184 ~~~~~ 188 (262)
T 1yrb_A 184 LSEEE 188 (262)
T ss_dssp CCHHH
T ss_pred ccccc
Confidence 87654
No 368
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.42 E-value=9.6e-05 Score=77.58 Aligned_cols=38 Identities=32% Similarity=0.590 Sum_probs=25.3
Q ss_pred CceEEEEeecCCCCcchHhhhhc------CcceeEecCCCCCce
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALL------NAKKVSVSATPGKTK 358 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~------~~~kvsVs~tPG~TK 358 (595)
....|+++|.||||||||+|.|. +.+.+.+..-|+.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 45789999999999999999996 334444444455443
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.39 E-value=8.2e-06 Score=91.65 Aligned_cols=136 Identities=23% Similarity=0.257 Sum_probs=74.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-.+++||.+|+|||||++.|+|-.. .+.+-+.+| |..... ++...++.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~~-----------------p~~G~i~~~--g~~i~~-------------~~~~~~~~ 418 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLYD-----------------PASGTISLD--GHDIRQ-------------LNPVWLRS 418 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSSC-----------------CSEEEEEET--TEETTT-------------BCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCcC-----------------CCCcEEEEC--CEEhhh-------------CCHHHHHh
Confidence 3589999999999999999998652 233455566 543222 12233444
Q ss_pred hhhhHHHHhhhcChhHHHH-HhCCCCCCCCCCCC---CCCCCCHHHHHHHhh-------hhcCccccCCCCCHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLEN-IYGIMITQPDEGED---PNRPPFSEELCNAYG-------YNRGFMTSNGQPDNPRSARYI 471 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~-~Y~i~~~~p~~~~~---~~~~~~~~e~L~~~a-------~~rG~~~~gG~pD~~rAAr~i 471 (595)
.++.+.+-...++.++.++ .|+.........+. ..+....++++..+. ..+|...+|||.++...||.+
T Consensus 419 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral 498 (595)
T 2yl4_A 419 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 498 (595)
T ss_dssp SEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHH
T ss_pred ceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 4444444334455566666 34432100000000 000001122222221 124567899999999999999
Q ss_pred HHHHHhCCceeec-CCCCCChhh
Q psy9995 472 LKDFVNGHLLYCQ-APPGVPQEK 493 (595)
Q Consensus 472 LkD~~~GKL~~~~-~PP~~~~~~ 493 (595)
++ +-+++..- |--+.|+..
T Consensus 499 ~~---~p~illlDEpts~LD~~~ 518 (595)
T 2yl4_A 499 LK---NPKILLLDEATSALDAEN 518 (595)
T ss_dssp HH---CCSEEEEECCCSSCCHHH
T ss_pred Hc---CCCEEEEECcccCCCHHH
Confidence 87 46776554 444566653
No 370
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.38 E-value=0.00013 Score=76.22 Aligned_cols=23 Identities=48% Similarity=0.824 Sum_probs=20.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~ 344 (595)
...++++|.||+|||||+|.|++
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999984
No 371
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.36 E-value=9.8e-05 Score=70.95 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=29.0
Q ss_pred ceEEEEeecCCCCcchHhhhhcCc-----ceeEecCCCCCce
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNA-----KKVSVSATPGKTK 358 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~-----~kvsVs~tPG~TK 358 (595)
...|+++|++|||||||+|.|++. +...++..||+|.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~ 71 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKA 71 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCch
Confidence 368999999999999999999864 3445666777653
No 372
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.36 E-value=0.0001 Score=76.99 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=26.9
Q ss_pred ceEEEEeecCCCCcchHhhhhcC------cceeEecCCCCCce
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLN------AKKVSVSATPGKTK 358 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~------~~kvsVs~tPG~TK 358 (595)
...|+++|+||+|||||+|.|++ .+...++.-|++|.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 46799999999999999999973 44455566666554
No 373
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.36 E-value=3e-05 Score=84.38 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=40.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce-e-----------------------EecC------CCCCceeeEEEEc---CCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK-V-----------------------SVSA------TPGKTKHFQTLFV---DDE 368 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k-v-----------------------sVs~------tPG~TKh~Qti~~---~~~ 368 (595)
.++|+++|.+|+|||||+|+|++... + .+.+ .+|.|.+.....+ +..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 58999999999999999999986410 0 0111 3788876543322 346
Q ss_pred eEEEeCCCCc
Q psy9995 369 LLLCDCPGLV 378 (595)
Q Consensus 369 ~~liDtPGl~ 378 (595)
+.++||||..
T Consensus 87 ~~iiDtPGh~ 96 (458)
T 1f60_A 87 VTVIDAPGHR 96 (458)
T ss_dssp EEEEECCCCT
T ss_pred EEEEECCCcH
Confidence 8999999974
No 374
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.34 E-value=5.7e-05 Score=82.80 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=35.5
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcc------eeEecCCCCCceeeE--EEEcC-CceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAK------KVSVSATPGKTKHFQ--TLFVD-DELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~------kvsVs~tPG~TKh~Q--ti~~~-~~~~liDtPGl~ 378 (595)
.++|+++|.+|+|||||+|+|++.. ....+..+|+|.+.. .+..+ ..+.++||||..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 5899999999999999999999865 134456788887753 23333 478999999974
No 375
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.45 E-value=2.9e-05 Score=73.73 Aligned_cols=56 Identities=20% Similarity=0.128 Sum_probs=36.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcC---CceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVD---DELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~---~~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|+|++... ....+.+|.... .+.++ -.+.++||||..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 358999999999999999999986542 122222222211 12222 245599999974
No 376
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.33 E-value=5.6e-05 Score=80.68 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=42.6
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc--e-----e-E--ec------CCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK--K-----V-S--VS------ATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~--k-----v-s--Vs------~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
..++|+++|.+|+|||||+|+|++.. . . . +. .++|.|.+...+.+ ...+.++||||..
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 45899999999999999999998731 0 0 0 11 15788877654443 3679999999986
No 377
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.33 E-value=0.0001 Score=78.88 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=42.2
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcce--eEecCCCCCceeeEE--EEc------------------------CCceEE
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKK--VSVSATPGKTKHFQT--LFV------------------------DDELLL 371 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~k--vsVs~tPG~TKh~Qt--i~~------------------------~~~~~l 371 (595)
...++|+++|.+|+|||||+|+|++... ......+|.|.+... ..+ ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 3458999999999999999999997542 223345888876432 111 146899
Q ss_pred EeCCCCc
Q psy9995 372 CDCPGLV 378 (595)
Q Consensus 372 iDtPGl~ 378 (595)
+||||..
T Consensus 88 iDtPGh~ 94 (410)
T 1kk1_A 88 IDAPGHE 94 (410)
T ss_dssp EECSSHH
T ss_pred EECCChH
Confidence 9999974
No 378
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.33 E-value=0.00021 Score=67.74 Aligned_cols=124 Identities=15% Similarity=0.133 Sum_probs=78.1
Q ss_pred cccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCee--eEEEeCCCcccChhhhhHHHHHHHHHHHhhc
Q psy9995 108 LLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRREL--NLLQEEDGLVITPYEKNLDFWRQLWRVIERS 172 (595)
Q Consensus 108 ~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~--~~L~DT~Gi~~t~~ern~e~~rql~~vie~s 172 (595)
.+.|-..++.||||+.+.|.+.+.. ....+.|.. +.+.||+|... +.. + .......+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~--~~~---~---~~~~~~~~ 78 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER--YRR---I---TSAYYRGA 78 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG--TTC---C---CHHHHTTC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh--hhh---h---hHHHHhcC
Confidence 4556778999999999999876421 123455543 45689999532 111 1 12245679
Q ss_pred CeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCH-----HHHHHHHHHHhhCCCeEEEEecccCC
Q psy9995 173 DVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTR-----KQRCYWTKYFNSVNVAVAFFSATNIY 243 (595)
Q Consensus 173 DvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~-----~~~~~w~~~~~~~gi~vi~~SA~~~~ 243 (595)
|.+++|+|+.++.++.. +..++..+ ....|+++|+||+||... ..... +....++.++.+||+.+.
T Consensus 79 ~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~---l~~~~~~~~~d~Sal~~~ 153 (199)
T 2f9l_A 79 VGALLVYDIAKHLTYEN--VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARA---FAEKNNLSFIETSALDST 153 (199)
T ss_dssp SEEEEEEETTCHHHHHT--HHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH---HHHHTTCEEEECCTTTCT
T ss_pred CEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHH---HHHHcCCeEEEEeCCCCC
Confidence 99999999987655432 22333222 246789999999999642 22223 333456777888988765
Q ss_pred C
Q psy9995 244 D 244 (595)
Q Consensus 244 ~ 244 (595)
+
T Consensus 154 ~ 154 (199)
T 2f9l_A 154 N 154 (199)
T ss_dssp T
T ss_pred C
Confidence 5
No 379
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.33 E-value=8.3e-05 Score=78.79 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=36.3
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
+|+++|.+|+|||||+|+|+ ..|.|.+.....+ +..+.++||||..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~ 71 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYP 71 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChH
Confidence 89999999999999999998 3455655443332 4578999999985
No 380
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.31 E-value=0.00036 Score=69.51 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=49.9
Q ss_pred hcCeEEEEEeCCCC--CCCCchHHHHHHHHh-----CCCCcEEEEEeCCCCCCHHHHHHHHHHHhh-CCCeEEEEecccC
Q psy9995 171 RSDVIVQIVDARNP--LLFRCEDLERYVKEV-----SPHKRNMILLNKADLLTRKQRCYWTKYFNS-VNVAVAFFSATNI 242 (595)
Q Consensus 171 ~sDvVl~VvDAR~P--l~~~~~~Le~~lk~v-----~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-~gi~vi~~SA~~~ 242 (595)
.+|++|+|+|+.++ .++. .+..++.++ ..+.|+|||.||+||.+........++... .++.++.+||+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~--~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFD--DQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHH--HHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHH--HHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 58999999999987 5432 333343322 246899999999999876555544444444 3778999999988
Q ss_pred CC
Q psy9995 243 YD 244 (595)
Q Consensus 243 ~~ 244 (595)
.+
T Consensus 240 ~g 241 (255)
T 3c5h_A 240 VN 241 (255)
T ss_dssp BS
T ss_pred CC
Confidence 76
No 381
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.31 E-value=9.6e-05 Score=78.78 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=41.6
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce----e-----------EecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK----V-----------SVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k----v-----------sVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
.++|+++|.+|+|||||+|+|++... . ......|.|.+...+.+ +..+.++||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 48999999999999999999987410 0 01124677777554433 3679999999975
No 382
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.30 E-value=9.8e-05 Score=79.64 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.9
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..++|+++|.+|+|||||+|+|++..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 35899999999999999999998653
No 383
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.27 E-value=0.00022 Score=72.58 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=39.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEE--EEcC-C--ceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQT--LFVD-D--ELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qt--i~~~-~--~~~liDtPGl~ 378 (595)
..++|+++|.+|||||||+|.+++... ....+++|..... +.++ . .+.++||||..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 358999999999999999999986542 3445556554332 3333 2 34599999975
No 384
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.27 E-value=0.00016 Score=77.18 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=39.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce--eEecCCCCCceeeEE--EEc---------------C---------CceEEE
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK--VSVSATPGKTKHFQT--LFV---------------D---------DELLLC 372 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k--vsVs~tPG~TKh~Qt--i~~---------------~---------~~~~li 372 (595)
..++|+++|.+|+|||||+|+|++... ......+|.|.+... ..+ + ..+.++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 458999999999999999999997542 233345788876432 111 1 468999
Q ss_pred eCCCCc
Q psy9995 373 DCPGLV 378 (595)
Q Consensus 373 DtPGl~ 378 (595)
||||..
T Consensus 87 DtPGh~ 92 (408)
T 1s0u_A 87 DSPGHE 92 (408)
T ss_dssp ECSSHH
T ss_pred ECCCHH
Confidence 999964
No 385
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.26 E-value=0.00011 Score=74.35 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=34.9
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEec-------CCCCCcee------eEEEEcCCceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVS-------ATPGKTKH------FQTLFVDDELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs-------~tPG~TKh------~Qti~~~~~~~liDtPGl~~ 379 (595)
+++++||.+|+|||||||+|+|......+ ..+..+.. +|...+...+.++|+||+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 67999999999999999999986544333 22222221 23223345789999999864
No 386
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.22 E-value=0.00026 Score=69.21 Aligned_cols=57 Identities=28% Similarity=0.379 Sum_probs=35.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceeeEEEEcCC---ceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHFQTLFVDD---ELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~Qti~~~~---~~~liDtPGl~ 378 (595)
.++|++||-+||||||||+.++...- ....+|.|..-....+.++. .+.|+||+|..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 48999999999999999999985431 22234444433333444433 46799999964
No 387
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.19 E-value=5.3e-05 Score=84.04 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=39.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce---------------eEecC------CCCCceeeEEEEc---CCceEEEeCCCC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK---------------VSVSA------TPGKTKHFQTLFV---DDELLLCDCPGL 377 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k---------------vsVs~------tPG~TKh~Qti~~---~~~~~liDtPGl 377 (595)
..+|+|+|.+|||||||+|+|+.... ..++. .+|+|.......+ +..+.|+||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 36899999999999999999972111 11111 3677765443332 457899999998
Q ss_pred c
Q psy9995 378 V 378 (595)
Q Consensus 378 ~ 378 (595)
.
T Consensus 93 ~ 93 (528)
T 3tr5_A 93 A 93 (528)
T ss_dssp T
T ss_pred h
Confidence 6
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.17 E-value=0.00019 Score=68.95 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=42.5
Q ss_pred hcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHH--HHHHHHHHHhhC--CCeEEEEecccCCC
Q psy9995 171 RSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRK--QRCYWTKYFNSV--NVAVAFFSATNIYD 244 (595)
Q Consensus 171 ~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~--~~~~w~~~~~~~--gi~vi~~SA~~~~~ 244 (595)
..+.++.|+|+..+.. .+..+... .+.|.++|+||+|+.+.. ......+++... +.+++.+||+++.+
T Consensus 129 ~~~~~i~vvd~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 200 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD----VVEKHPEI--FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKG 200 (221)
T ss_dssp SCSEEEEEEEGGGCTT----HHHHCHHH--HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBT
T ss_pred ccCcEEEEEeCCCcch----hhhhhhhh--hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCC
Confidence 3577888999976531 22222221 147899999999996432 233333444332 46889999998876
No 389
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.15 E-value=0.00011 Score=79.39 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=35.0
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcce-eE-----------------------ec------CCCCCceeeEEEEc---CC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKK-VS-----------------------VS------ATPGKTKHFQTLFV---DD 367 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~k-vs-----------------------Vs------~tPG~TKh~Qti~~---~~ 367 (595)
..++|+++|.+|+|||||+|+|+.... +. +. ..+|+|.+.....+ +.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 358999999999999999999986411 10 01 14788877553322 45
Q ss_pred ceEEEeCCCCc
Q psy9995 368 ELLLCDCPGLV 378 (595)
Q Consensus 368 ~~~liDtPGl~ 378 (595)
.+.++||||..
T Consensus 85 ~~~iiDtpG~~ 95 (435)
T 1jny_A 85 FFTIIDAPGHR 95 (435)
T ss_dssp EEEECCCSSST
T ss_pred EEEEEECCCcH
Confidence 79999999975
No 390
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.14 E-value=0.00016 Score=80.15 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=35.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce---------------eEec------CCCCCceeeEEEE---cCCceEEEeCCCC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK---------------VSVS------ATPGKTKHFQTLF---VDDELLLCDCPGL 377 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k---------------vsVs------~tPG~TKh~Qti~---~~~~~~liDtPGl 377 (595)
..+|+++|.+|+|||||+|+|+.... ..++ .+.|.|....... -+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 47899999999999999999985321 1122 2556665533222 2457899999998
Q ss_pred c
Q psy9995 378 V 378 (595)
Q Consensus 378 ~ 378 (595)
.
T Consensus 93 ~ 93 (529)
T 2h5e_A 93 E 93 (529)
T ss_dssp T
T ss_pred h
Confidence 5
No 391
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.14 E-value=0.00011 Score=78.30 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
...++|+++|.+|+|||||+|+|++.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 34689999999999999999999974
No 392
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.12 E-value=0.00031 Score=75.78 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=38.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCccee---EecCCCCCceeeEEEEc-----CCceEEEeCCCCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKV---SVSATPGKTKHFQTLFV-----DDELLLCDCPGLVM 379 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kv---sVs~tPG~TKh~Qti~~-----~~~~~liDtPGl~~ 379 (595)
++++|||.+|+|||||||+|+|.... .....|+.|+....+.. ...+.++|+||+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 45999999999999999999997421 12235676655222211 23678999999863
No 393
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.11 E-value=9.8e-05 Score=83.69 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=60.1
Q ss_pred HhhhhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCC
Q psy9995 133 EFLQWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKA 212 (595)
Q Consensus 133 ~f~~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~ 212 (595)
..+.|.+..+.|+||||-.+ |..++.+++.-+|..|.||||..........+.+.+.+ .+.|.|+++||+
T Consensus 60 ~~~~~~~~~iNlIDTPGH~D--------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKm 129 (638)
T 3j25_A 60 TSFQWENTKVNIIDTPGHMD--------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKI 129 (638)
T ss_dssp CCCBCSSCBCCCEECCCSSS--------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEEC
T ss_pred EEEEECCEEEEEEECCCcHH--------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEecc
Confidence 56799999999999999653 34556778899999999999998877666666666553 467899999999
Q ss_pred CCCCH
Q psy9995 213 DLLTR 217 (595)
Q Consensus 213 DLl~~ 217 (595)
|....
T Consensus 130 Dr~~a 134 (638)
T 3j25_A 130 DQNGI 134 (638)
T ss_dssp CSSSC
T ss_pred ccccC
Confidence 98653
No 394
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.05 E-value=0.0007 Score=74.60 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=26.0
Q ss_pred CceEEEEeecCCCCcchHhhhhc------CcceeEecC
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALL------NAKKVSVSA 352 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~------~~~kvsVs~ 352 (595)
....|++||.|||||||++|.|+ |.+.+.|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45689999999999999999999 776666655
No 395
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.04 E-value=0.00015 Score=82.88 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=36.2
Q ss_pred CceEEEEeecCCCCcchHhhhhcCccee-----------EecC------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKV-----------SVSA------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kv-----------sVs~------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
...+|+++|.+|+|||||+|+|+..... .+++ .+|+|.......+ +..+.|+||||+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 3578999999999999999999842111 1222 4677766443222 4578999999986
No 396
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.03 E-value=2e-05 Score=80.07 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=29.2
Q ss_pred hcCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhhh
Q psy9995 452 NRGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 452 ~rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
+++.-.+||+.+....||+++. +-+|+..- |--+.|+..-.
T Consensus 152 ~~~~~LSgGq~QRv~lAraL~~---~p~lllLDEPts~LD~~~~~ 193 (271)
T 2ixe_A 152 ETGNQLSGGQRQAVALARALIR---KPRLLILDNATSALDAGNQL 193 (271)
T ss_dssp GGGTTSCHHHHHHHHHHHHHTT---CCSEEEEESTTTTCCHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHHhc---CCCEEEEECCccCCCHHHHH
Confidence 4555689999999999999986 45776654 44456665433
No 397
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.02 E-value=0.00071 Score=77.55 Aligned_cols=69 Identities=16% Similarity=0.048 Sum_probs=53.3
Q ss_pred CeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCH
Q psy9995 139 RELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTR 217 (595)
Q Consensus 139 g~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~ 217 (595)
..++.|+||||-.+ |.-++.+++.-+|-+|.||||.......-+.+.+.+. ..+.|.|+++||+|....
T Consensus 84 ~~~iNlIDTPGHvD--------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~--~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 84 NYRVNVIDTPGHVD--------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN--KYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CEEEEEECCCSCTT--------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH--HHTCCEEEEEECSSSTTC
T ss_pred CEEEEEEeCCCCcc--------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH--HcCCCeEEEEccccccCc
Confidence 57899999999653 3455667889999999999999887655555555544 347899999999998643
No 398
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.01 E-value=0.00033 Score=71.93 Aligned_cols=57 Identities=30% Similarity=0.397 Sum_probs=30.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCCC------CceeeE--EEE-----cCCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG------KTKHFQ--TLF-----VDDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG------~TKh~Q--ti~-----~~~~~~liDtPGl~ 378 (595)
.++|++||.+|||||||||+|++......+..++ .|..+. .+. ....+.++||||+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 4889999999999999999998863222221110 121111 111 23467899999984
No 399
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.94 E-value=0.00062 Score=65.52 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=26.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcCc-----ceeEecCCCCC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNA-----KKVSVSATPGK 356 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~-----~kvsVs~tPG~ 356 (595)
..+|+++|.+|||||||+|.|+.. +...+...+++
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~ 77 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA 77 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC
Confidence 478999999999999999999864 33445555553
No 400
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.93 E-value=0.00019 Score=80.70 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=37.3
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeEecCCC-CCceeeE--EEEc-------------------CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATP-GKTKHFQ--TLFV-------------------DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tP-G~TKh~Q--ti~~-------------------~~~~~liDtPGl~ 378 (595)
..+|+++|.+|+|||||+|+|++... +...| |.|.+.. .+.. ...+.++||||..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 46899999999999999999997542 22334 6776632 2211 0148999999985
No 401
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.91 E-value=0.00055 Score=64.61 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=78.7
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHH-------------HhhhhcCeee--EEEeCCCcccChhhhhHHHHHHHHHHHhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERD-------------EFLQWRRELN--LLQEEDGLVITPYEKNLDFWRQLWRVIER 171 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~-------------~f~~wrg~~~--~L~DT~Gi~~t~~ern~e~~rql~~vie~ 171 (595)
-.+.|-..++.||||+.+.|...... ....+.+..+ .+.||+|...-. .++. .....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~-----~~~~---~~~~~ 101 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR-----AITS---AYYRG 101 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS-----CCCH---HHHTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh-----hhhH---HHhhc
Confidence 35677888999999999999876532 2234555544 458999964311 1122 24567
Q ss_pred cCeEEEEEeCCCCCCCCchHHHHHHHHh----CCCCcEEEEEeCCCCCCHHH--HHHHHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDARNPLLFRCEDLERYVKEV----SPHKRNMILLNKADLLTRKQ--RCYWTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR~Pl~~~~~~Le~~lk~v----~~~K~~ILVlNK~DLl~~~~--~~~w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|.++.|+|..++.++.+ +..++..+ ....++++|+||+||..... ......+....++.++.+||+++.+
T Consensus 102 ~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~ 178 (191)
T 1oix_A 102 AVGALLVYDIAKHLTYEN--VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178 (191)
T ss_dssp CCEEEEEEETTCHHHHHT--HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred CCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 899999999876654322 22333221 24678999999999854211 1111222334467777788877654
No 402
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.86 E-value=0.00031 Score=75.64 Aligned_cols=58 Identities=33% Similarity=0.348 Sum_probs=34.5
Q ss_pred CceEEEEeecCCCCcchHhhhhcCcceeEecCCCC------CceeeEEE-------EcCCceEEEeCCCCcc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG------KTKHFQTL-------FVDDELLLCDCPGLVM 379 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG------~TKh~Qti-------~~~~~~~liDtPGl~~ 379 (595)
-.++|+|||.+|||||||||+|++......+ .+| .|.....+ .+...+.++||||+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 3578999999999999999999987642222 111 12211111 1123578999999853
No 403
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.86 E-value=0.00032 Score=85.47 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=78.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeEEEEcCCceEEEeCCCCccCCcccchhHHHHhcCCchhhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Qti~~~~~~~liDtPGl~~p~f~~tk~eli~~gil~id~lrd 402 (595)
-++|+||.+|+|||||++.|+|.. ....+-+.+| |..... ++.+.+|.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g~~-----------------~p~~G~I~i~--g~~i~~-------------~~~~~~r~ 1107 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFY-----------------DPMAGSVFLD--GKEIKQ-------------LNVQWLRA 1107 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTTSS-----------------CCSEEEEESS--SSCTTS-------------SCHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc-----------------CCCCCEEEEC--CEEccc-------------CCHHHHHh
Confidence 368999999999999999999865 2234556666 654433 33455555
Q ss_pred hhhhHHHHhhhcChhHHHHH-hCCCCCCCCCCC--CCCCCCCHHHHHHHhhh-------hcCccccCCCCCHHHHHHHHH
Q psy9995 403 HVPAVNMLCTLVPRHVLENI-YGIMITQPDEGE--DPNRPPFSEELCNAYGY-------NRGFMTSNGQPDNPRSARYIL 472 (595)
Q Consensus 403 ~~~~v~~l~~~i~~~~le~~-Y~i~~~~p~~~~--~~~~~~~~~e~L~~~a~-------~rG~~~~gG~pD~~rAAr~iL 472 (595)
.++.+.+-...++.++.++. |+.......+.+ ........++++..+.. .+|...+|||.+....||+++
T Consensus 1108 ~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A 1108 QLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp SCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence 55555554445566666663 443210000000 00000011222222221 156678999999999999999
Q ss_pred HHHHhCCceeecCC-CCCChh
Q psy9995 473 KDFVNGHLLYCQAP-PGVPQE 492 (595)
Q Consensus 473 kD~~~GKL~~~~~P-P~~~~~ 492 (595)
++ -+++.+-.| -+.|..
T Consensus 1188 ~~---p~iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A 1188 RQ---PHILLLDEATSALDTE 1205 (1284)
T ss_dssp HC---CSSEEEESCSSSCCHH
T ss_pred cC---CCEEEEeCCcccCCHH
Confidence 74 677766544 456654
No 404
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.84 E-value=0.00025 Score=77.30 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=32.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee------------------------Eec------CCCCCceeeEE--EEc-CCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV------------------------SVS------ATPGKTKHFQT--LFV-DDE 368 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv------------------------sVs------~tPG~TKh~Qt--i~~-~~~ 368 (595)
.++|+++|.+|+|||||+|+|+..... .+. ...|.|.+... +.. +..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 589999999999999999999742110 011 13577776542 222 356
Q ss_pred eEEEeCCCCc
Q psy9995 369 LLLCDCPGLV 378 (595)
Q Consensus 369 ~~liDtPGl~ 378 (595)
+.++||||..
T Consensus 123 ~~iiDtPGh~ 132 (467)
T 1r5b_A 123 FSLLDAPGHK 132 (467)
T ss_dssp EEECCCCC--
T ss_pred EEEEECCCcH
Confidence 8999999985
No 405
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.80 E-value=2.8e-05 Score=77.80 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=28.1
Q ss_pred cCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhhh
Q psy9995 453 RGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 453 rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
++...+||+.+....||.++. +-+++..- |--+.|+..-.
T Consensus 142 ~~~~LSgGq~qRv~iAraL~~---~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 142 QGAGLSGGQRQRIAIARALVN---NPKILIFDEATSALDYESEH 182 (247)
T ss_dssp TTTCCCHHHHHHHHHHHHHTT---CCSEEEECCCCSCCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHH
Confidence 345688999999999999985 45676654 44456665433
No 406
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.77 E-value=0.0013 Score=70.60 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=37.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcceeE-ecCCCC---CceeeEEEE--cCCceEEEeCCCCccC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKVS-VSATPG---KTKHFQTLF--VDDELLLCDCPGLVMP 380 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kvs-Vs~tPG---~TKh~Qti~--~~~~~~liDtPGl~~p 380 (595)
...++|+|.+|+|||||||+|+|..... .+.+.| +|++.-... ....+.++|+||+..+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch
Confidence 3579999999999999999999943211 111222 233311111 1247899999998654
No 407
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.77 E-value=0.00065 Score=79.36 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.2
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV 348 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv 348 (595)
..+|+|||.+|+|||||+|+|+....+
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~ 45 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGI 45 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 468999999999999999999975433
No 408
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.74 E-value=0.00039 Score=68.65 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=28.6
Q ss_pred ceEEEEeecCCCCcchHhhhhc-----CcceeEecCCCC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALL-----NAKKVSVSATPG 355 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~-----~~~kvsVs~tPG 355 (595)
...+.++|.+||||||+++.|. +.+.+.|..-|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4678999999999999999998 777667776665
No 409
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.69 E-value=0.00056 Score=76.92 Aligned_cols=57 Identities=23% Similarity=0.291 Sum_probs=29.9
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee--------Eec------CCCCCceeeEEEEc-----C---CceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV--------SVS------ATPGKTKHFQTLFV-----D---DELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv--------sVs------~tPG~TKh~Qti~~-----~---~~~~liDtPGl~ 378 (595)
..+|+++|.+|+|||||+++|+..... .+. ...|.|-..+.+.+ + ..+.|+||||..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 368999999999999999999863211 111 13677776544332 1 357899999986
No 410
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.68 E-value=0.00025 Score=70.59 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
-.++++|.+|+|||||++.|+|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999865
No 411
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.65 E-value=0.00074 Score=80.70 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=37.3
Q ss_pred CCceEEEEeecCCCCcchHhhhhcCcce---------e------EecCCCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 320 PDVMTIGLVGYPNVGKSSTINALLNAKK---------V------SVSATPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 320 ~~~i~i~lvG~pnvGKSSliN~L~~~~k---------v------sVs~tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
...++|+++|.+|+|||||+|+|++... . ....++|+|.+...+.+ ...+.++||||..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 3468999999999999999999987410 0 11235788876543333 4578999999975
No 412
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.65 E-value=7.6e-05 Score=79.72 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47999999999999999999865
No 413
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.58 E-value=0.00079 Score=76.95 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=34.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce-----eE------ecC------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK-----VS------VSA------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k-----vs------Vs~------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
..+|+|+|.+|+|||||+|+|+.... .. +.+ ..|.|.......+ +..+.|+||||..
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 47899999999999999999983211 01 111 4566665443222 4578999999985
No 414
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.57 E-value=0.00051 Score=69.45 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=28.1
Q ss_pred ccccCCCCCHHHHHHHHHHHHH---hCCceeecCC-CCCChhhhh
Q psy9995 455 FMTSNGQPDNPRSARYILKDFV---NGHLLYCQAP-PGVPQEKYH 495 (595)
Q Consensus 455 ~~~~gG~pD~~rAAr~iLkD~~---~GKL~~~~~P-P~~~~~~f~ 495 (595)
.-.+||+.+....||+++..|- +-+|+.+--| -+.|+..-.
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 4478999999999999998663 4556555433 456665433
No 415
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.56 E-value=4.8e-05 Score=80.56 Aligned_cols=132 Identities=10% Similarity=0.019 Sum_probs=74.7
Q ss_pred CCcccCCCCCCCCcCCCHHHHHHHHHH-----Hhhhhc-----------CeeeEEEeCCCcccCh-hhhhHHHHHHHHHH
Q psy9995 106 RELLKIPRRPKWDKNTTAEQLQAMERD-----EFLQWR-----------RELNLLQEEDGLVITP-YEKNLDFWRQLWRV 168 (595)
Q Consensus 106 ~~~l~iprRPnw~kst~~n~L~~~Er~-----~f~~wr-----------g~~~~L~DT~Gi~~t~-~ern~e~~rql~~v 168 (595)
...+-+-.+||.||||+.|.|.+.... ....|. +..+.++||||+.... ..... ..+.+...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l-~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFV-DARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGS-CTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHH-hHHHHHHH
Confidence 345778899999999999999987321 011111 1236799999997542 11100 01122222
Q ss_pred H--hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhh-CCCeEEEEecc
Q psy9995 169 I--ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNS-VNVAVAFFSAT 240 (595)
Q Consensus 169 i--e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~-~gi~vi~~SA~ 240 (595)
+ ++.|.+++++|+...+.........++. ..+.++++++||+|.+....+....+.|++ .|..+.+.++.
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLARLDYIK--GGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEEEEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGG
T ss_pred hcccccCceEEEEcCCceEEECCEEEEEEcc--CCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCch
Confidence 2 6789999999984332221111112222 235689999999999865444433444433 25444444443
No 416
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.49 E-value=0.00047 Score=69.38 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=28.2
Q ss_pred cCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhh
Q psy9995 453 RGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKY 494 (595)
Q Consensus 453 rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f 494 (595)
++...+||+.+....||+++. +-+|+..- |--+.|+..-
T Consensus 152 ~~~~LSgGqkqRv~lAraL~~---~p~lllLDEPts~LD~~~~ 191 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIARCLLK---DPKIVIFDEATSSLDSKTE 191 (260)
T ss_dssp SSBCCCHHHHHHHHHHHHHHH---CCSEEEEECCCCTTCHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHHc---CCCEEEEECccccCCHHHH
Confidence 455688999999999999986 45776554 4445666543
No 417
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.44 E-value=0.0007 Score=76.12 Aligned_cols=57 Identities=28% Similarity=0.353 Sum_probs=32.7
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee--------EecC------CCCCceeeEEEEc-----C---CceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV--------SVSA------TPGKTKHFQTLFV-----D---DELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv--------sVs~------tPG~TKh~Qti~~-----~---~~~~liDtPGl~ 378 (595)
..+|+++|.+|+|||||+++|+....+ .+.+ ..|.|-..+...+ + ..+.|+||||..
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 368999999999999999999863211 1111 2566665332221 1 257799999986
No 418
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.38 E-value=0.0017 Score=74.28 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=39.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcce-----------eEecC------CCCCceeeEEEEc---C-------CceEEEeC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKK-----------VSVSA------TPGKTKHFQTLFV---D-------DELLLCDC 374 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~k-----------vsVs~------tPG~TKh~Qti~~---~-------~~~~liDt 374 (595)
..+|+|+|.+|+|||||++.|+.... ..+.+ ..|.|.......+ + ..+.|+||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 46899999999999999999974211 01121 3566765443222 2 57899999
Q ss_pred CCCc
Q psy9995 375 PGLV 378 (595)
Q Consensus 375 PGl~ 378 (595)
||..
T Consensus 90 PG~~ 93 (704)
T 2rdo_7 90 PGHV 93 (704)
T ss_pred CCcc
Confidence 9986
No 419
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.37 E-value=0.0009 Score=66.60 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCceEEEEeecC---------CCCcchHhhhhcCc
Q psy9995 320 PDVMTIGLVGYP---------NVGKSSTINALLNA 345 (595)
Q Consensus 320 ~~~i~i~lvG~p---------nvGKSSliN~L~~~ 345 (595)
...++|++||.| |||||||+|+|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 456999999999 99999999999974
No 420
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.30 E-value=0.0022 Score=69.22 Aligned_cols=128 Identities=12% Similarity=-0.012 Sum_probs=73.8
Q ss_pred ccCCCCCCCCcCCCHHHHHHHH---HH-Hh---h----------hhcC--eeeEEEeCCCcccChhh------hhHHHHH
Q psy9995 109 LKIPRRPKWDKNTTAEQLQAME---RD-EF---L----------QWRR--ELNLLQEEDGLVITPYE------KNLDFWR 163 (595)
Q Consensus 109 l~iprRPnw~kst~~n~L~~~E---r~-~f---~----------~wrg--~~~~L~DT~Gi~~t~~e------rn~e~~r 163 (595)
+.|-.+++.||||+++.|.+.. +. .. . +..+ ....+.||+|+...... ....+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~ 124 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDA 124 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHH
Confidence 7788899999999999988652 11 00 0 0001 12456777776543210 0011122
Q ss_pred HHHHHHhh---------------cC-eEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHH-
Q psy9995 164 QLWRVIER---------------SD-VIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKY- 226 (595)
Q Consensus 164 ql~~vie~---------------sD-vVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~- 226 (595)
++...+.. +| +|++|+|++.++...+.. .++.+..+.++|+|+||+|.+++.+...+...
T Consensus 125 q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die---ilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I 201 (427)
T 2qag_B 125 QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV---TMKKLDSKVNIIPIIAKADAISKSELTKFKIKI 201 (427)
T ss_dssp HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH---HHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH---HHHHHhhCCCEEEEEcchhccchHHHHHHHHHH
Confidence 22222221 12 588899998877654433 34444567899999999999998777655544
Q ss_pred ---HhhCCCeEEEEec
Q psy9995 227 ---FNSVNVAVAFFSA 239 (595)
Q Consensus 227 ---~~~~gi~vi~~SA 239 (595)
+...|+.+++||.
T Consensus 202 ~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 202 TSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHBTTBCCCCCCC-
T ss_pred HHHHHHcCCcEEecCC
Confidence 4456888998885
No 421
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.24 E-value=0.00025 Score=70.31 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=28.0
Q ss_pred CccccCCCCCHHHHHHHHHHHHHhCCceeecCC-CCCChhhhh
Q psy9995 454 GFMTSNGQPDNPRSARYILKDFVNGHLLYCQAP-PGVPQEKYH 495 (595)
Q Consensus 454 G~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~~P-P~~~~~~f~ 495 (595)
..-.+||+.+....||+++. +-+++.+--| -+.|+..-.
T Consensus 143 ~~~LSgGq~QRv~iAral~~---~p~llllDEPts~LD~~~~~ 182 (235)
T 3tif_A 143 PNQLSGGQQQRVAIARALAN---NPPIILADQPTWALDSKTGE 182 (235)
T ss_dssp GGGSCHHHHHHHHHHHHHTT---CCSEEEEESTTTTSCHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHH
Confidence 44578999999999999986 5677766544 456655433
No 422
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.24 E-value=0.0015 Score=65.35 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=30.0
Q ss_pred cCccccCCCCCHHHHHHHHHHHHHh----CCceeec-CCCCCChhhhh
Q psy9995 453 RGFMTSNGQPDNPRSARYILKDFVN----GHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 453 rG~~~~gG~pD~~rAAr~iLkD~~~----GKL~~~~-~PP~~~~~~f~ 495 (595)
+..-.+||+.+....||.++.+-.. ++++..- |=-+.|+..-.
T Consensus 123 ~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~ 170 (249)
T 2qi9_C 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170 (249)
T ss_dssp BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHH
Confidence 4456789999999999999998762 2266554 44456665433
No 423
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.23 E-value=0.00018 Score=76.10 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=71.1
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH------hhhhc-----------CeeeEEEeCCCcccChhhhhHHHHHHHHHH-
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE------FLQWR-----------RELNLLQEEDGLVITPYEKNLDFWRQLWRV- 168 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~------f~~wr-----------g~~~~L~DT~Gi~~t~~ern~e~~rql~~v- 168 (595)
..+-+-.+||.||||+.|.|.+..... ...+. +..+.|+||||+..............+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 456688999999999999999874110 00111 112679999999764311100001222222
Q ss_pred -HhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHHHHhh
Q psy9995 169 -IERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNS 229 (595)
Q Consensus 169 -ie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~~~~~ 229 (595)
....+.+++++|+...+.........++. ..+.|+++|+||+|.+.........+.|++
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~--~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~ 300 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLARFDYVS--GGRRAFTCHFSNRLTIHRTKLEKADELYKN 300 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEE--SSSEEEEEEECTTSCEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEcCCCEEEEcceEEEEEec--CCCceEEEEecCccccccccHHHHHHHHHH
Confidence 36789999999984332222111112222 345789999999999876555555555543
No 424
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.19 E-value=0.0087 Score=65.88 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=54.5
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHHH--hhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcE-EEEEeCC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRVI--ERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRN-MILLNKA 212 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vi--e~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~-ILVlNK~ 212 (595)
.|.+.-+.|+||||....... ++..+..+. -.+|.+++|+|+..... ...+.+.+.+ ..++ ++|+||+
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~----l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~---~~~i~gvVlNK~ 250 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDS----LFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD---KVDVASVIVTKL 250 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHH----HHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH---HHCCCCEEEECT
T ss_pred HHCCCcEEEEeCCCCcccchh----HHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh---hcCceEEEEeCC
Confidence 457788899999998653222 233332222 27999999999986542 2222222221 2453 8999999
Q ss_pred CCCCHHH-HHHHHHHHhhCCCeEEEEec
Q psy9995 213 DLLTRKQ-RCYWTKYFNSVNVAVAFFSA 239 (595)
Q Consensus 213 DLl~~~~-~~~w~~~~~~~gi~vi~~SA 239 (595)
|...... ...+.. ..|.++.|+..
T Consensus 251 D~~~~~g~~l~~~~---~~g~PI~fig~ 275 (504)
T 2j37_W 251 DGHAKGGGALSAVA---ATKSPIIFIGT 275 (504)
T ss_dssp TSCCCCTHHHHHHH---HHCCCEEEEEC
T ss_pred ccccchHHHHHHHH---HhCCCeEEecc
Confidence 9975422 222322 34777777654
No 425
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.95 E-value=0.027 Score=60.70 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=54.5
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHHH--HhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCC-c-EEEEEeC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWRV--IERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHK-R-NMILLNK 211 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~v--ie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K-~-~ILVlNK 211 (595)
.|.+.-+.++||+|..... ..+...+..+ +..+|.+++|+|+..+. +....++.+.... + ..+|+||
T Consensus 177 ~~~~~D~vIIDT~G~~~~~----~~l~~~l~~i~~~~~~d~vllVvda~~g~-----~~~~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKEE----KGLLEEMKQIKEITNPDEIILVIDGTIGQ-----QAGIQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp TTSSCSEEEEECCCSCSSH----HHHHHHHHHTTSSSCCSEEEEEEEGGGGG-----GHHHHHHHHHTTSCSCEEEEEEC
T ss_pred HhhCCCEEEEcCCCCcccc----HHHHHHHHHHHHHhcCcceeEEeeccccH-----HHHHHHHHHhhcccCCeEEEEeC
Confidence 3566778899999976432 2223333222 22689999999996542 1222233232334 5 8899999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCeEEEEe
Q psy9995 212 ADLLTRKQRCYWTKYFNSVNVAVAFFS 238 (595)
Q Consensus 212 ~DLl~~~~~~~w~~~~~~~gi~vi~~S 238 (595)
+|...... .........+.++.|++
T Consensus 248 ~D~~~~~g--~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 248 LDGSAKGG--GALSAVAETKAPIKFIG 272 (432)
T ss_dssp SSSCSTTH--HHHHHHHHSSCCEEEEC
T ss_pred CCCccchH--HHHHHHHHHCCCEEEee
Confidence 99865322 12233344577877765
No 426
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.95 E-value=0.00077 Score=66.90 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.6
Q ss_pred hhcCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhhh
Q psy9995 451 YNRGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 451 ~~rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
.++..-.++|+.+....||+++. +-+++..- |=-+.|+..-.
T Consensus 134 ~~~~~~LSgGq~qrv~lAraL~~---~p~lllLDEPts~LD~~~~~ 176 (240)
T 1ji0_A 134 KQLGGTLSGGEQQMLAIGRALMS---RPKLLMMDEPSLGLAPILVS 176 (240)
T ss_dssp TSBSSSSCHHHHHHHHHHHHHTT---CCSEEEEECTTTTCCHHHHH
T ss_pred cCChhhCCHHHHHHHHHHHHHHc---CCCEEEEcCCcccCCHHHHH
Confidence 34555678999999999999975 45676554 44456665433
No 427
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.91 E-value=0.00036 Score=73.87 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=27.8
Q ss_pred CccccCCCCCHHHHHHHHHHHHHhCCceeecCCC-CCChhhhh
Q psy9995 454 GFMTSNGQPDNPRSARYILKDFVNGHLLYCQAPP-GVPQEKYH 495 (595)
Q Consensus 454 G~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~~PP-~~~~~~f~ 495 (595)
-.-++||+.++...||+++. +-+++.+--|- +.|+..-.
T Consensus 161 ~~~LSGGqkQRVaIArAL~~---~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 161 PSNLSGGQKQRVAIARALAS---NPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp TTTSCHHHHHHHHHHHHTTT---CCSEEEEESTTTTSCHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHhc---CCCEEEEECCCccCCHHHHH
Confidence 34478999999999999975 56788775554 46654433
No 428
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.88 E-value=0.0007 Score=71.50 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47999999999999999999865
No 429
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.87 E-value=0.0038 Score=67.45 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcC
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~ 344 (595)
...|+++|.|||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 430
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.84 E-value=0.0014 Score=69.60 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47999999999999999999865
No 431
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.80 E-value=0.005 Score=64.20 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=35.3
Q ss_pred EEEEeecCCCCcchHhhhhcCcceeEecCCCCCceeeE--EEEcCCceEEEeCCCCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDDELLLCDCPGLV 378 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~kvsVs~tPG~TKh~Q--ti~~~~~~~liDtPGl~ 378 (595)
+|.++|-+|||||||++.+.+........+.+.|-.+. .+...-.+.++||||-.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQE 57 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQL 57 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCch
Confidence 47899999999999999887543211112233333322 22223468999999975
No 432
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.73 E-value=0.0037 Score=65.70 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=44.6
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCC--------CCchHHHHHHHHh-C----CCC
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLL--------FRCEDLERYVKEV-S----PHK 203 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~--------~~~~~Le~~lk~v-~----~~K 203 (595)
+.+..+.+.||+|-.. .+ ..|.. ..+.+|.||+|+|..+.-. .+-.+...++..+ . .+.
T Consensus 190 ~~~~~l~iwDt~GQe~---~r--~~w~~---yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~ 261 (353)
T 1cip_A 190 FKDLHFKMFDVGGQRS---ER--KKWIH---CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDT 261 (353)
T ss_dssp ETTEEEEEEEECCSGG---GG--GGGGG---GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred eCCeeEEEEeCCCchh---hh--HHHHH---HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCC
Confidence 3466788999999431 11 12333 5678999999999986421 1112222333332 1 367
Q ss_pred cEEEEEeCCCCC
Q psy9995 204 RNMILLNKADLL 215 (595)
Q Consensus 204 ~~ILVlNK~DLl 215 (595)
|+|||+||+||.
T Consensus 262 piiLv~NK~DL~ 273 (353)
T 1cip_A 262 SIILFLNKKDLF 273 (353)
T ss_dssp EEEEEEECHHHH
T ss_pred cEEEEEECcCch
Confidence 999999999985
No 433
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.68 E-value=0.0047 Score=70.26 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=39.8
Q ss_pred ceEEEEeecCCCCcchHhhhhcCccee-----E------ecC------CCCCceeeEEEEc---CCceEEEeCCCCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAKKV-----S------VSA------TPGKTKHFQTLFV---DDELLLCDCPGLV 378 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~kv-----s------Vs~------tPG~TKh~Qti~~---~~~~~liDtPGl~ 378 (595)
..+|+++|.+|+|||||+++|++.... . +.+ ..|.|-..|...+ +..+.|+||||..
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 468999999999999999999843211 0 111 2366666665433 4468899999985
No 434
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.55 E-value=0.0011 Score=69.87 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47999999999999999999865
No 435
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.40 E-value=0.00086 Score=71.34 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47999999999999999999865
No 436
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.37 E-value=0.03 Score=60.62 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.0
Q ss_pred CceEEEEeecCCCCcchHhhhhc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALL 343 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~ 343 (595)
.+..|+++|.+||||||+++.|+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 437
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.29 E-value=0.01 Score=62.54 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=42.2
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHH-HHhhcCeEEEEEeCCCCC--------CCCchHHHHHHHHh-----CCC
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWR-VIERSDVIVQIVDARNPL--------LFRCEDLERYVKEV-----SPH 202 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~-vie~sDvVl~VvDAR~Pl--------~~~~~~Le~~lk~v-----~~~ 202 (595)
+.+..+.+.||+|-. -.|.+|. ..+.++.||+|+|..+.- ..+-.+...++..+ ..+
T Consensus 198 ~~~~~l~i~Dt~Gq~---------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 198 IKNVPFKMVDVGGQR---------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp ETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eCCeEEEEEeccchh---------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 456778899999952 1233332 467899999999998631 11112222333322 135
Q ss_pred CcEEEEEeCCCCC
Q psy9995 203 KRNMILLNKADLL 215 (595)
Q Consensus 203 K~~ILVlNK~DLl 215 (595)
.|+|||+||+||.
T Consensus 269 ~piILv~NK~DL~ 281 (362)
T 1zcb_A 269 VSIILFLNKTDLL 281 (362)
T ss_dssp SEEEEEEECHHHH
T ss_pred CCEEEEEEChhhh
Confidence 7999999999985
No 438
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.22 E-value=0.0045 Score=59.87 Aligned_cols=38 Identities=34% Similarity=0.364 Sum_probs=28.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcce-eEecCCCCCceee
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTKHF 360 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~k-vsVs~tPG~TKh~ 360 (595)
..|+|+|.+|||||||+|.|++... .-+.+.+.+|+..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 3589999999999999999997653 3445556666654
No 439
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.22 E-value=0.031 Score=60.05 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=40.8
Q ss_pred cCeEEEEEeCC-CCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHH----HHHHHhhCCCeEEEEecccCCC
Q psy9995 172 SDVIVQIVDAR-NPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY----WTKYFNSVNVAVAFFSATNIYD 244 (595)
Q Consensus 172 sDvVl~VvDAR-~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~----w~~~~~~~gi~vi~~SA~~~~~ 244 (595)
+|+||++++.. ..+. ..+ ..+++.+..+.++|+|+||+|++++.++.. +.+++...++.++.+|+.++.+
T Consensus 139 ~~vlL~ldePt~~~L~--~~d-~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~ 213 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLK--PLD-IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE 213 (418)
T ss_dssp CCEEEEECCC-CCSCC--HHH-HHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC------
T ss_pred eeEEEEEecCcccCCC--HHH-HHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcC
Confidence 45566665543 2332 222 245555556789999999999998766543 3344555688888899866543
No 440
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.11 E-value=0.033 Score=58.00 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=46.0
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-hHHHHHHHH---hCCCCcEEEEEeCCCCC
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRC-EDLERYVKE---VSPHKRNMILLNKADLL 215 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~-~~Le~~lk~---v~~~K~~ILVlNK~DLl 215 (595)
..+.+-||+|-.. |.... | ........++.+|+|+|+.++ .+.. ..+..++.. ..++.|++||.||+||.
T Consensus 46 v~LqIWDTAGQEr--f~~~~--l-~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 46 IDLAVMELPGQLN--YFEPS--Y-DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp SCEEEEECCSCSS--SCCCS--H-HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEEEEECCCchh--ccchh--h-hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 4578899999532 21100 1 112356789999999999887 2211 223233332 24578999999999998
Q ss_pred CHH
Q psy9995 216 TRK 218 (595)
Q Consensus 216 ~~~ 218 (595)
+++
T Consensus 120 ~~~ 122 (331)
T 3r7w_B 120 SED 122 (331)
T ss_dssp CSH
T ss_pred chh
Confidence 754
No 441
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.04 E-value=0.048 Score=52.02 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=52.3
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT 216 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~ 216 (595)
..+..+.++|++|.+..+.... ...+.++.|+|+..+....... ...+ .++.++|+||+|+.+
T Consensus 116 ~~~~d~~~id~~g~i~~~~s~~-----------~~~~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPADFD-----------LGTHKRIVVISTTEGDDTIEKH-PGIM-----KTADLIVINKIDLAD 178 (226)
T ss_dssp GGGCSEEEEECCSCSSGGGGCC-----------CSCSEEEEEEEGGGCTTTTTTC-HHHH-----TTCSEEEEECGGGHH
T ss_pred cCCCCEEEEeCCCCccCcchhh-----------hccCcEEEEEecCcchhhHhhh-hhHh-----hcCCEEEEeccccCc
Confidence 3445677889999644322110 2346778889864332111111 1111 478999999999965
Q ss_pred HH--HHHHHHHHHhhC--CCeEEEEecccCCC
Q psy9995 217 RK--QRCYWTKYFNSV--NVAVAFFSATNIYD 244 (595)
Q Consensus 217 ~~--~~~~w~~~~~~~--gi~vi~~SA~~~~~ 244 (595)
.. ......+++... +.+++.+||+++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 210 (226)
T 2hf9_A 179 AVGADIKKMENDAKRINPDAEVVLLSLKTMEG 210 (226)
T ss_dssp HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTT
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCC
Confidence 32 223333333332 56889999988765
No 442
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.97 E-value=0.016 Score=62.76 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=41.8
Q ss_pred CceEEEEeecCCCCcchHhhhhcC-----------------cceeEecCCC-CCceeeEEEE----c--C----CceEEE
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALLN-----------------AKKVSVSATP-GKTKHFQTLF----V--D----DELLLC 372 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~~-----------------~~kvsVs~tP-G~TKh~Qti~----~--~----~~~~li 372 (595)
....|+|+|.+++|||+|+|.|++ ...++|+++. .+|+.+.... + + ..++|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 356789999999999999997752 2345565443 2677754321 1 1 248999
Q ss_pred eCCCCccCC
Q psy9995 373 DCPGLVMPS 381 (595)
Q Consensus 373 DtPGl~~p~ 381 (595)
||.|+.-+.
T Consensus 146 DTEG~~d~~ 154 (457)
T 4ido_A 146 DTQGTFDSQ 154 (457)
T ss_dssp EECCBTCTT
T ss_pred eccCCCCcc
Confidence 999987554
No 443
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.40 E-value=0.031 Score=62.88 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|||.+|+|||||+|+|+|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999864
No 444
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.03 E-value=0.029 Score=60.03 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=44.8
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCC----------CCCCCchHHHHHHHHh-----CC
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARN----------PLLFRCEDLERYVKEV-----SP 201 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~----------Pl~~~~~~Le~~lk~v-----~~ 201 (595)
+.+..+.+.||+|-.. ...+|.. ..+.++.||+|+|..+ .-. -.....++..+ ..
T Consensus 214 ~~~v~l~iwDtaGQe~-----~r~~w~~---yf~~a~~iIfV~dis~ydq~l~ed~~~ns--~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 214 VDKVNFHMFDVGGQRD-----ERRKWIQ---CFNDVTAIIFVVASSSYNMVIREDNQTNR--LQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp ETTEEEEEEEECCSGG-----GGGGGGG---GTTTCCEEEEEEETTGGGCBCTTTSCSBH--HHHHHHHHHHHHTCTTCS
T ss_pred cCCccceecccchhhh-----hhhhhHh---hccCCCEEEEEEECcccccccccccccch--HHHHHHHHHHHHhcccCC
Confidence 4566788999999521 1112333 5678999999999976 221 12233344433 13
Q ss_pred CCcEEEEEeCCCCCC
Q psy9995 202 HKRNMILLNKADLLT 216 (595)
Q Consensus 202 ~K~~ILVlNK~DLl~ 216 (595)
+.|+|||+||+||..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 578999999999843
No 445
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.02 E-value=0.019 Score=59.70 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=43.9
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHH-HHhhcCeEEEEEeCC-------CCCCC-CchHHHHHHHHh-----CC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWR-VIERSDVIVQIVDAR-------NPLLF-RCEDLERYVKEV-----SP 201 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~-vie~sDvVl~VvDAR-------~Pl~~-~~~~Le~~lk~v-----~~ 201 (595)
.+.+..+.+.||+|-. -.|.+|. ..+.++.||+|+|.. +.-.. +-.+...++..+ ..
T Consensus 163 ~~~~v~l~iwDtgGQe---------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 163 DLQSVIFRMVDVGGQR---------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp EETTEEEEEEEECCSH---------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred EeeceeeEEEEcCCch---------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 3456678899999942 1334443 567899999999764 11111 111222233332 14
Q ss_pred CCcEEEEEeCCCCCC
Q psy9995 202 HKRNMILLNKADLLT 216 (595)
Q Consensus 202 ~K~~ILVlNK~DLl~ 216 (595)
+.|+|||+||+||..
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 678999999999854
No 446
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.95 E-value=0.016 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred EEEEeecCCCCcchHhhhhcCcce
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAKK 347 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~k 347 (595)
+++++|.+|+|||||++.|++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 447
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.95 E-value=0.042 Score=52.44 Aligned_cols=25 Identities=36% Similarity=0.415 Sum_probs=22.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCcc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
...|+|+|.+|+|||||++.|.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999754
No 448
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.81 E-value=0.14 Score=52.08 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHhCCCCcEEEEEeCCCCCCHHHHH----HHHHHHhhCCCeEEEEecccC
Q psy9995 194 RYVKEVSPHKRNMILLNKADLLTRKQRC----YWTKYFNSVNVAVAFFSATNI 242 (595)
Q Consensus 194 ~~lk~v~~~K~~ILVlNK~DLl~~~~~~----~w~~~~~~~gi~vi~~SA~~~ 242 (595)
.+++.+....++++|+||+|+.+..++. ...+++...++.++.+||+++
T Consensus 147 ~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 147 AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES 199 (301)
T ss_dssp HHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----
T ss_pred HHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc
Confidence 4555555556899999999999865432 334455666888889999887
No 449
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.78 E-value=0.03 Score=57.34 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=0.0
Q ss_pred ceEEEEeecCCCCcchHhhhhc------CcceeEecCCCCCc-------------------------------eeeEEEE
Q psy9995 322 VMTIGLVGYPNVGKSSTINALL------NAKKVSVSATPGKT-------------------------------KHFQTLF 364 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~------~~~kvsVs~tPG~T-------------------------------Kh~Qti~ 364 (595)
...++++|.+|+||||+++.|. +.+..-+..-+... ...+.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Q ss_pred -cCCceEEEeCCCCc
Q psy9995 365 -VDDELLLCDCPGLV 378 (595)
Q Consensus 365 -~~~~~~liDtPGl~ 378 (595)
-+..+++|||||..
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
No 450
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.68 E-value=0.02 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|+|.+|+|||||++.|++..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998753
No 451
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.66 E-value=0.018 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|||.+|+|||||++.|++..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999753
No 452
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.63 E-value=0.03 Score=52.16 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEEEEeecCCCCcchHhhhhcCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
-.++++|.||+||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999874
No 453
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=93.61 E-value=0.059 Score=56.33 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=44.6
Q ss_pred hhcCeeeEEEeCCCcccChhhhhHHHHHHHHH-HHhhcCeEEEEEeCCC--------CCCCCchHHHHHHHHh-----CC
Q psy9995 136 QWRRELNLLQEEDGLVITPYEKNLDFWRQLWR-VIERSDVIVQIVDARN--------PLLFRCEDLERYVKEV-----SP 201 (595)
Q Consensus 136 ~wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~-vie~sDvVl~VvDAR~--------Pl~~~~~~Le~~lk~v-----~~ 201 (595)
.+.+..+.+.||+|- +-.|.+|. ..+.++.||+|+|..+ +-..+-.+...++..+ ..
T Consensus 157 ~~~~v~l~iwDtaGQ---------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 157 VVKDIPFHLIDVGGQ---------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp ESSSCEEEEEECCSC---------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred EeeeeeeccccCCCc---------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 345677889999993 12344443 5678999999999862 0111111122222222 14
Q ss_pred CCcEEEEEeCCCCCC
Q psy9995 202 HKRNMILLNKADLLT 216 (595)
Q Consensus 202 ~K~~ILVlNK~DLl~ 216 (595)
+.|+|||+||+||..
T Consensus 228 ~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 228 GAVKLIFLNKMDLFE 242 (340)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCeEEEEEECchhhh
Confidence 679999999999864
No 454
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.52 E-value=0.024 Score=59.59 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=40.5
Q ss_pred eeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCC--------CCCCCCchHHHHHHHHh-----CCCCcEE
Q psy9995 140 ELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDAR--------NPLLFRCEDLERYVKEV-----SPHKRNM 206 (595)
Q Consensus 140 ~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR--------~Pl~~~~~~Le~~lk~v-----~~~K~~I 206 (595)
..+.+.||+|-.. + ..+|.. ..+.+|.||+|+|.. ++-..+-.....++..+ ..+.|+|
T Consensus 183 v~l~iwDtaGQe~--~---r~~~~~---y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii 254 (354)
T 2xtz_A 183 EVYRLFDVGGQRN--E---RRKWIH---LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 254 (354)
T ss_dssp -EEEEEEECCSTT--G---GGGTGG---GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE
T ss_pred eeeEEEECCCchh--h---hHHHHH---HhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEE
Confidence 4577889999421 1 112322 567899999999986 11111112233333333 1457899
Q ss_pred EEEeCCCCC
Q psy9995 207 ILLNKADLL 215 (595)
Q Consensus 207 LVlNK~DLl 215 (595)
||+||+||.
T Consensus 255 LvgNK~DL~ 263 (354)
T 2xtz_A 255 LFLNKFDIF 263 (354)
T ss_dssp EEEECHHHH
T ss_pred EEEECcchh
Confidence 999999984
No 455
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.44 E-value=0.08 Score=54.71 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..|+++|.+|+||||+.+.|++..
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcC
Confidence 579999999999999999998643
No 456
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=93.43 E-value=0.036 Score=59.15 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=44.6
Q ss_pred CcccCCCCCCCCcCCCHHHHHHHHHHH----hh---------hhc-----------------CeeeEEEeCCCcccChhh
Q psy9995 107 ELLKIPRRPKWDKNTTAEQLQAMERDE----FL---------QWR-----------------RELNLLQEEDGLVITPYE 156 (595)
Q Consensus 107 ~~l~iprRPnw~kst~~n~L~~~Er~~----f~---------~wr-----------------g~~~~L~DT~Gi~~t~~e 156 (595)
..+-|-.+||+||||++|.|.+..-.. |. .+. ...+.|+||||+.....+
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~ 102 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN 102 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch
Confidence 456678899999999999999763210 11 111 224789999998753221
Q ss_pred hhHHHHHHHHHHHhhcCeEEEEEeCCC
Q psy9995 157 KNLDFWRQLWRVIERSDVIVQIVDARN 183 (595)
Q Consensus 157 rn~e~~rql~~vie~sDvVl~VvDAR~ 183 (595)
...+..+....+..+|+|++|+|+.+
T Consensus 103 -~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 103 -GQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC--
T ss_pred -hhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 11222355677899999999999964
No 457
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.41 E-value=0.089 Score=56.76 Aligned_cols=75 Identities=24% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHhhh-hcccCCCCCCCCceEEEEeecCCCCcchHhhhhc------CcceeEecCCCCCce------------ee
Q psy9995 300 REELISLFKS-FHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALL------NAKKVSVSATPGKTK------------HF 360 (595)
Q Consensus 300 ~~eL~e~~~~-~~~~~~~~~~~~~i~i~lvG~pnvGKSSliN~L~------~~~kvsVs~tPG~TK------------h~ 360 (595)
.++|.+++.. .... ......+..|+++|.+||||||+++.|. +.+..-++.-+...- .+
T Consensus 76 ~~eL~~~L~~~~~~~--~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv 153 (433)
T 3kl4_A 76 YDELSKLFGGDKEPN--VNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGV 153 (433)
T ss_dssp HHHHHHHHCSSSCCC--CSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCcccccc--ccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCC
Q ss_pred EEEEc--------------------CCceEEEeCCC
Q psy9995 361 QTLFV--------------------DDELLLCDCPG 376 (595)
Q Consensus 361 Qti~~--------------------~~~~~liDtPG 376 (595)
..+.. +..+++|||||
T Consensus 154 ~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 154 QVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp CEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECC
T ss_pred ceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCC
No 458
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.37 E-value=0.21 Score=50.13 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=40.7
Q ss_pred hhcCeEEEEEeCC-CCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCCHHHHHHHHH----HHhhCCCeE
Q psy9995 170 ERSDVIVQIVDAR-NPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTK----YFNSVNVAV 234 (595)
Q Consensus 170 e~sDvVl~VvDAR-~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~~~~~~~w~~----~~~~~gi~v 234 (595)
.++++.++++|.. .|+...+..+.+.+. ...++|+|+||+|.+++.+...... .+...++.+
T Consensus 110 aRal~~lllldep~~gL~~lD~~~l~~L~---~~~~vI~Vi~K~D~lt~~e~~~~k~~i~~~l~~~~i~i 176 (270)
T 3sop_A 110 TRVHCCLYFISPTGHSLRPLDLEFMKHLS---KVVNIIPVIAKADTMTLEEKSEFKQRVRKELEVNGIEF 176 (270)
T ss_dssp CSCCEEEEEECCCSSSCCHHHHHHHHHHH---TTSEEEEEETTGGGSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred heeeeeeEEEecCCCcCCHHHHHHHHHHH---hcCcEEEEEeccccCCHHHHHHHHHHHHHHHHHcCccc
Confidence 3468999999953 566544444444444 3389999999999999877655443 344445543
No 459
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.34 E-value=0.39 Score=51.86 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=57.2
Q ss_pred hcCeeeEEEeCCCcccChhhhhHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCchHHHHHHHHhCCCCcEEEEEeCCCCCC
Q psy9995 137 WRRELNLLQEEDGLVITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLT 216 (595)
Q Consensus 137 wrg~~~~L~DT~Gi~~t~~ern~e~~rql~~vie~sDvVl~VvDAR~Pl~~~~~~Le~~lk~v~~~K~~ILVlNK~DLl~ 216 (595)
..+.-+.|+||+|......+...++ +.+..+ ..+|.+++|+||.... ......+.+. .......+|+||.|...
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el-~~i~~~-~~pd~vlLVvDA~~gq--~a~~~a~~f~--~~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEM-KQISNV-IHPHEVILVIDGTIGQ--QAYNQALAFK--EATPIGSIIVTKLDGSA 253 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHH-HHHHHH-HCCSEEEEEEEGGGGG--GHHHHHHHHH--HSCTTEEEEEECCSSCS
T ss_pred hCCCCEEEEECCCcccchHHHHHHH-HHHHHh-hcCceEEEEEeCCCch--hHHHHHHHHH--hhCCCeEEEEECCCCcc
Confidence 3457788999999765443333332 333333 3589999999997532 1122222222 13356779999999976
Q ss_pred HHHHHHHHHHHhhCCCeEEEEec
Q psy9995 217 RKQRCYWTKYFNSVNVAVAFFSA 239 (595)
Q Consensus 217 ~~~~~~w~~~~~~~gi~vi~~SA 239 (595)
.... ........+.++.|++.
T Consensus 254 ~gG~--~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 KGGG--ALSAVAATGAPIKFIGT 274 (443)
T ss_dssp SHHH--HHHHHHTTCCCEEEEEC
T ss_pred cccH--HHHHHHHHCCCEEEEEc
Confidence 5421 12223345889999886
No 460
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.25 E-value=0.097 Score=51.35 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=46.1
Q ss_pred HHHH-HHHhhcCeEEEEEeCCCCCCCCc-hHHHH---HHHHhC--CCCcEEEEEeCC-CCCCHHHHHHHHHHH--hh--C
Q psy9995 163 RQLW-RVIERSDVIVQIVDARNPLLFRC-EDLER---YVKEVS--PHKRNMILLNKA-DLLTRKQRCYWTKYF--NS--V 230 (595)
Q Consensus 163 rql~-~vie~sDvVl~VvDAR~Pl~~~~-~~Le~---~lk~v~--~~K~~ILVlNK~-DLl~~~~~~~w~~~~--~~--~ 230 (595)
|.+| ...+++|.||+|||+.+...... .+|.+ ++.+-. .+.|++|+.||. |+...-...+..+.+ .. .
T Consensus 116 RplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R 195 (227)
T 3l82_B 116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNH 195 (227)
T ss_dssp -CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCS
T ss_pred HHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCC
Confidence 4444 26789999999999977643222 22321 221111 345888888996 663221222333332 11 2
Q ss_pred CCeEEEEecccCCC
Q psy9995 231 NVAVAFFSATNIYD 244 (595)
Q Consensus 231 gi~vi~~SA~~~~~ 244 (595)
...+..+||.++.|
T Consensus 196 ~W~Iq~csA~TGeG 209 (227)
T 3l82_B 196 PWLVQDTEAETLTG 209 (227)
T ss_dssp CEEEEEEETTTCTT
T ss_pred CEEEEEeECCCCcC
Confidence 33577899999877
No 461
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.20 E-value=0.025 Score=53.41 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
..++++|.+|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35899999999999999999864
No 462
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.09 E-value=0.026 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|++..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999998753
No 463
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.07 E-value=0.11 Score=56.05 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.4
Q ss_pred CceEEEEeecCCCCcchHhhhhc
Q psy9995 321 DVMTIGLVGYPNVGKSSTINALL 343 (595)
Q Consensus 321 ~~i~i~lvG~pnvGKSSliN~L~ 343 (595)
....|+++|.+||||||+...|+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999988
No 464
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.99 E-value=0.027 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.8
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|+|.+|+|||||++.|+|..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999854
No 465
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.91 E-value=0.033 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..|+|+|.+|+|||||++.|++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458999999999999999998754
No 466
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.66 E-value=0.032 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|+|.+|+|||||++.|++..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999854
No 467
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.53 E-value=0.033 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|+|.+|+|||||++.|++..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37999999999999999999754
No 468
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.31 E-value=0.051 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 469
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=92.30 E-value=0.037 Score=61.45 Aligned_cols=57 Identities=25% Similarity=0.257 Sum_probs=34.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcce---------------eEecCC------CCCceee---EEEEcCCceEEEeCCCCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAKK---------------VSVSAT------PGKTKHF---QTLFVDDELLLCDCPGLV 378 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~k---------------vsVs~t------PG~TKh~---Qti~~~~~~~liDtPGl~ 378 (595)
-+|+|||....|||||.-+|+-... -.+++. -|.|-.. +..+-+..+-||||||.+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 5799999999999999999862110 012221 2444332 222335678999999998
Q ss_pred c
Q psy9995 379 M 379 (595)
Q Consensus 379 ~ 379 (595)
.
T Consensus 112 D 112 (548)
T 3vqt_A 112 D 112 (548)
T ss_dssp G
T ss_pred H
Confidence 3
No 470
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.27 E-value=0.049 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.7
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..|+|+|.+|+|||||++.|.+..
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999853
No 471
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.19 E-value=0.05 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..|+|+|.+|+||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 472
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.09 E-value=0.054 Score=48.83 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.6
Q ss_pred eEEEEeecCCCCcchHhhhh
Q psy9995 323 MTIGLVGYPNVGKSSTINAL 342 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L 342 (595)
+.|+++|.||+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 473
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.01 E-value=0.053 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.2
Q ss_pred eEEEEeecCCCCcchHhhhhcC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~ 344 (595)
-.++++|.+|+|||||++.+.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 3579999999999999998764
No 474
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.91 E-value=0.046 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.268 Sum_probs=20.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
..|+++|.||+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 475
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.82 E-value=0.065 Score=52.42 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.9
Q ss_pred eEEEEeecCCCCcchHhhhhc
Q psy9995 323 MTIGLVGYPNVGKSSTINALL 343 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~ 343 (595)
..|+|+|.||+||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999
No 476
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.76 E-value=0.048 Score=50.87 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEeecCCCCcchHhhhhcC
Q psy9995 324 TIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~ 344 (595)
.++++|.+|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999999985
No 477
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.72 E-value=0.082 Score=52.09 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=29.3
Q ss_pred hcCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhhh
Q psy9995 452 NRGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 452 ~rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
+++...++|+.+....||+++. +-+++..- |--+.|+..-.
T Consensus 123 ~~~~~LSgGqkqRv~lAraL~~---~p~lllLDEPts~LD~~~~~ 164 (237)
T 2cbz_A 123 EKGVNLSGGQKQRVSLARAVYS---NADIYLFDDPLSAVDAHVGK 164 (237)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHH---CCSEEEEESTTTTSCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCcccccCHHHHH
Confidence 3456689999999999999986 45776654 44456765433
No 478
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.57 E-value=0.063 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
..|+|+|.|||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999854
No 479
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.39 E-value=0.064 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=15.5
Q ss_pred eEEEEeecCCCCcchHhhhhc-Ccc
Q psy9995 323 MTIGLVGYPNVGKSSTINALL-NAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~-~~~ 346 (595)
-.++|+|.+|+|||||++.|+ +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 358999999999999999999 754
No 480
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.38 E-value=0.069 Score=53.22 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHHHHhh-----hhcCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhhh
Q psy9995 443 EELCNAYG-----YNRGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 443 ~e~L~~~a-----~~rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
.++|+.+. .++..-.++|+.+....||+++. +-+++..- |=-+.|+..-.
T Consensus 135 ~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~---~p~lllLDEPts~LD~~~~~ 190 (257)
T 1g6h_A 135 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT---NPKMIVMDEPIAGVAPGLAH 190 (257)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT---CCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHc---CCCEEEEeCCccCCCHHHHH
Confidence 45555543 22344578999999999999985 46776654 44456665433
No 481
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.37 E-value=0.065 Score=52.22 Aligned_cols=24 Identities=33% Similarity=0.319 Sum_probs=21.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
-.++|+|.+|+|||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 358999999999999999999864
No 482
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.37 E-value=0.069 Score=53.45 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=28.3
Q ss_pred hcCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhhh
Q psy9995 452 NRGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 452 ~rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
++..-.+||+.+....||+++. +-+++..- |--+.|+..-.
T Consensus 149 ~~~~~LSgGq~qRv~lAraL~~---~p~lllLDEPts~LD~~~~~ 190 (262)
T 1b0u_A 149 KYPVHLSGGQQQRVSIARALAM---EPDVLLFDEPTSALDPELVG 190 (262)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHT---CCSEEEEESTTTTSCHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHH
Confidence 3444578999999999999986 45777664 44456664433
No 483
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.31 E-value=0.068 Score=50.59 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.6
Q ss_pred eEEEEeecCCCCcchHhhhhcCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
..|+|+|.+|+||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 484
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.31 E-value=0.076 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEEeecCCCCcchHhhhhcC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~ 344 (595)
..|.++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999985
No 485
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.31 E-value=0.07 Score=51.64 Aligned_cols=22 Identities=18% Similarity=-0.002 Sum_probs=20.5
Q ss_pred EEEEeecCCCCcchHhhhhcCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~ 345 (595)
.++++|.+|+|||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999986
No 486
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.25 E-value=0.071 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=21.1
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 487
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.20 E-value=0.074 Score=53.81 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.0
Q ss_pred cCccccCCCCCHHHHHHHHHHHHHhCCceeec-CCCCCChhhhh
Q psy9995 453 RGFMTSNGQPDNPRSARYILKDFVNGHLLYCQ-APPGVPQEKYH 495 (595)
Q Consensus 453 rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~~-~PP~~~~~~f~ 495 (595)
...-.+||+.+....||+++. +-+++.+- |--+.|+..-.
T Consensus 140 ~~~~LSgGqkQRv~iAraL~~---~P~lLlLDEPts~LD~~~~~ 180 (275)
T 3gfo_A 140 PTHCLSFGQKKRVAIAGVLVM---EPKVLILDEPTAGLDPMGVS 180 (275)
T ss_dssp BGGGSCHHHHHHHHHHHHHTT---CCSEEEEECTTTTCCHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHc---CCCEEEEECccccCCHHHHH
Confidence 444578999999999999985 56777664 44456765443
No 488
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.20 E-value=0.075 Score=52.03 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=28.3
Q ss_pred cCccccCCCCCHHHHHHHHHHHHHhCCceee-cCCCCCChhhhhh
Q psy9995 453 RGFMTSNGQPDNPRSARYILKDFVNGHLLYC-QAPPGVPQEKYHI 496 (595)
Q Consensus 453 rG~~~~gG~pD~~rAAr~iLkD~~~GKL~~~-~~PP~~~~~~f~~ 496 (595)
++...++|+.+....||.++. +-+++.. +|=-+.|+..-..
T Consensus 127 ~~~~LSgGqkqrv~lAral~~---~p~lllLDEPts~LD~~~~~~ 168 (229)
T 2pze_A 127 GGITLSGGQRARISLARAVYK---DADLYLLDSPFGYLDVLTEKE 168 (229)
T ss_dssp TCTTSCHHHHHHHHHHHHHHS---CCSEEEEESTTTTSCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhc---CCCEEEEECcccCCCHHHHHH
Confidence 345688999999999999985 4566655 4444566654443
No 489
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.19 E-value=0.07 Score=51.91 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 490
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.13 E-value=0.13 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCCcchHhhhhcCc
Q psy9995 322 VMTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 322 ~i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
...|+++|.+|+||||+++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999863
No 491
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.07 E-value=0.064 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.4
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
-.++|||.+|+|||||++.|+|..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 358999999999999999999854
No 492
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.06 E-value=0.069 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEeecCCCCcchHhhhhcCcc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
..|+|+|.+|+||||+.+.|.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998643
No 493
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.01 E-value=0.071 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEeecCCCCcchHhhhhcC
Q psy9995 324 TIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~ 344 (595)
.|+|+|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 494
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.99 E-value=0.08 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|+|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47999999999999999999864
No 495
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.94 E-value=0.086 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred eEEEEeecCCCCcchHhhhhcC
Q psy9995 323 MTIGLVGYPNVGKSSTINALLN 344 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~ 344 (595)
+.|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 496
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.91 E-value=0.061 Score=51.27 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++++|.+|+|||||++.|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47999999999999999999865
No 497
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.90 E-value=0.08 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEeecCCCCcchHhhhhcCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~ 345 (595)
.++++|.+|+|||||++.|+|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
No 498
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.86 E-value=0.074 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEEeecCCCCcchHhhhhcCc
Q psy9995 323 MTIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 323 i~i~lvG~pnvGKSSliN~L~~~ 345 (595)
..|+++|.||+||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 499
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.81 E-value=0.039 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEeecCCCCcchHhhhhcCcc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNAK 346 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~~ 346 (595)
.++|||.+|+|||||++.|++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999854
No 500
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.81 E-value=0.083 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.066 Sum_probs=19.9
Q ss_pred EEEEeecCCCCcchHhhhhcCc
Q psy9995 324 TIGLVGYPNVGKSSTINALLNA 345 (595)
Q Consensus 324 ~i~lvG~pnvGKSSliN~L~~~ 345 (595)
.|+|+|.||+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
Done!