RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9995
(595 letters)
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 147 bits (372), Expect = 3e-40
Identities = 68/323 (21%), Positives = 110/323 (34%), Gaps = 68/323 (21%)
Query: 162 WRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC 221
R++ ++ D++ ++VDAR P+ R +E +K +K ++LLNKAD
Sbjct: 14 RREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQ 69
Query: 222 YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDG 281
W ++F + + ++ N G
Sbjct: 70 QWKEHFENQGIRSLSINSVN-------------------------------------GQG 92
Query: 282 QKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINA 341
+ K K + P + ++G PNVGKS+ IN
Sbjct: 93 LNQIVPASKEILQEKFDRMRA-------------KGVKPRAIRALIIGIPNVGKSTLINR 139
Query: 342 LLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMIL--NGILPIDQ 399
L PG T Q + V EL L D PG++ P F + L G +
Sbjct: 140 LAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSI 199
Query: 400 MRDHVPAVNMLCTL--VPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMT 457
+ AV L L L+ YG+ + ED EL +A G RG +
Sbjct: 200 INLQDVAVFGLRFLEEHYPERLKERYGL----DEIPEDI------AELFDAIGEKRGCLM 249
Query: 458 SNGQPDNPRSARYILKDFVNGHL 480
S G + ++ I++D
Sbjct: 250 SGGLINYDKTTEVIIRDIRTEKF 272
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 93.9 bits (234), Expect = 1e-21
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSF-- 382
+ +VG PN GKS+ IN L + SV A PG TK Q +++ + + D PG++ +
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFS 161
Query: 383 VFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFS 442
A ++L G LP++++ D + GI
Sbjct: 162 EDLAAKLLLVGSLPVERIEDQRIFERAF------EIFARSIGI-------------ESSF 202
Query: 443 EELCNAYGYNRGFMTSNGQPDNPRSARYILKDFVNGHL 480
E + RG + G PD R+ + G
Sbjct: 203 SEFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGKA 240
Score = 66.5 bits (163), Expect = 2e-12
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 162 WRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC 221
RQ+ ++ + +V++ DAR P ++ K +ILLNK D+ K
Sbjct: 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVDF------SRKETIILLNKVDIADEKTTK 65
Query: 222 YWTKYFNSVNVAVAFFSATN 241
W ++F V
Sbjct: 66 KWVEFFKKQGKRVITTHKGE 85
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 88.5 bits (219), Expect = 4e-19
Identities = 50/252 (19%), Positives = 86/252 (34%), Gaps = 67/252 (26%)
Query: 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ 219
DF R L + + ++V+IVD + L R+V + +++ NKADL+ +
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGN----NKVLLVGNKADLIPKSV 113
Query: 220 RCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEED 279
+ K+ W S ++
Sbjct: 114 KHDKVKH------------------------------------------WMRYSAKQLGL 131
Query: 280 DGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTI 339
+ V S+ K EL + + R DV +VG NVGKS+ I
Sbjct: 132 KPEDVFLI-----SAAKGQGIAELADAIEYY------RGGKDVY---VVGCTNVGKSTFI 177
Query: 340 NALLN------AKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMI-LN 392
N ++ ++ S PG T + +D+E L D PG++ + L
Sbjct: 178 NRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLK 237
Query: 393 GILPIDQMRDHV 404
I P +++ V
Sbjct: 238 LITPTKEIKPMV 249
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 86.5 bits (214), Expect = 2e-18
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 65/234 (27%)
Query: 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQ 219
DF L R+ E ++V IVD + L R+ +++ NKADLL R
Sbjct: 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA----DNPILLVGNKADLLPR-- 113
Query: 220 RCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEED 279
+ E+
Sbjct: 114 -------------------------------------------SVKYPKLLRWMRRMAEE 130
Query: 280 DGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTI 339
G + D+ + S+ K + +++ + R DV +VG NVGKS+ I
Sbjct: 131 LGLCPV--DVCLVSAAKGIGMAKVMEAINRY------REGGDVY---VVGCTNVGKSTFI 179
Query: 340 NALLNA-----KKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKAD 388
N ++ ++ S PG T + ++ L D PG++ + D
Sbjct: 180 NRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVD 233
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.4 bits (174), Expect = 4e-13
Identities = 69/544 (12%), Positives = 160/544 (29%), Gaps = 151/544 (27%)
Query: 54 ESSFQEFLSTAQLAGTEFTAEKLNITFVNPKSGVGLLSKEEKELALQAHKEKRELLKIPR 113
E Q+F+ +F + P + + + E+R+ L
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQP------------SMMTRMYIEQRDRL---- 119
Query: 114 RPKWDKNTTAEQLQAMERDEFLQWRRELNLLQEEDGLVI------------------TPY 155
++ N + +L+ R+ L L+ ++I
Sbjct: 120 ---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 156 EKNLD---FW-------------RQLWRVIERSD-VIVQIVDARNPLLFRCEDLERYVKE 198
+ +D FW L +++ + D D + + R ++ ++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 199 V---SPHKRNMILLNKADLLTRKQRCYWT----KYFN--------SVNVAVAFFSATNIY 243
+ P++ +++L ++ FN + V F +
Sbjct: 237 LLKSKPYENCLLVLL--NV--------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 244 DDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREEL 303
I + + +E +S ++ D ++ + N ++ + + +
Sbjct: 287 THISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESI--RDG 340
Query: 304 ISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-FQT 362
++ + ++ VN ++ I S++N L P + + F
Sbjct: 341 LATWDNWKHVNCDKLT---TII----------ESSLNVL----------EPAEYRKMFDR 377
Query: 363 L--FVDDELLLCDCPGLVMPSFVFSKADMIL-NGILPIDQMRDHVPAVNMLC--TLVPRH 417
L F + P+ + S ++ ++ D M VN L +LV +
Sbjct: 378 LSVFPPSAHI---------PTILLS----LIWFDVIKSDVMVV----VNKLHKYSLVEKQ 420
Query: 418 VLENIYGIMITQPDE-GEDPNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDFV 476
E+ I + + N + + Y + F + + P Y +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYS-HI 477
Query: 477 NGHLLYCQAPPGVPQEKYHIFKLK-------ERKPLPKQTPRAMRALEPNVVRATDIDSK 529
HL + E+ +F++ E+K T N + K
Sbjct: 478 GHHLKNIE-----HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL----QQLK 528
Query: 530 FFKK 533
F+K
Sbjct: 529 FYKP 532
Score = 63.3 bits (153), Expect = 1e-10
Identities = 71/530 (13%), Positives = 158/530 (29%), Gaps = 159/530 (30%)
Query: 37 LEDGYDWNKINLKSVTEESS-----FQEFLSTAQLAGTEFTAEKLNITFVNP----KSGV 87
L Y + +K+ + S + E F K N++ + P + +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQAL 144
Query: 88 GLLSKEE-----------KE-LALQAHKEKRELLKIPRRPKW----DKNTTAEQLQAMER 131
L + K +AL + K+ + W + N+ L+ +++
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 132 DEFLQWRRELNLLQEEDG------------------LVITPYEKNL----DFW-RQLWR- 167
L ++ + N D L PYE L + + W
Sbjct: 205 ---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 168 --------VIER----SDVI-------VQIVDARNPL-------LF------RCEDLERY 195
+ R +D + + + L L R +DL R
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 196 VKEVSPHKRNMILLNKADLLTRKQRCYWTKYF-----NSVNVAVAFFSATNI---YDDI- 246
V +P + ++I + D L W + ++ +D +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 247 --PEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNR---E 301
P + ++ W D+ + + + N L S L+ + E
Sbjct: 380 VFPP-SAHIPTILL-------SLIWFDVIKSDVMV-----VVNKLHKYS---LVEKQPKE 423
Query: 302 ELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKK-----------VSV 350
IS+ + ++ + N + +V + N+ K+ + L+ +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 351 SATPGKTKHFQTLFVDDELL---------LCDCPGLVMPSFVFSKADMILNGILPIDQMR 401
P + F+ +F+D L + G ++ + + +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL----QQLKFYK----PYIC 535
Query: 402 DHVPA----VNMLCTLVPR---HVLE----NIYGIMITQPDEG--EDPNR 438
D+ P VN + +P+ +++ ++ I + DE E+ ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 59.5 bits (143), Expect = 2e-09
Identities = 66/490 (13%), Positives = 135/490 (27%), Gaps = 150/490 (30%)
Query: 187 FRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYDDI 246
F C+D++ K + + ++ D ++ R +WT + F
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--------- 83
Query: 247 PEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISL 306
EE ++ + + + Q + + I+ +L N ++
Sbjct: 84 -------------EEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--- 125
Query: 307 FKSFHDVNIPRMNP------------DVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP 354
F N+ R+ P + + G GK+ + + KV
Sbjct: 126 ---FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMD 181
Query: 355 GKTK--HFQTLFVDDELL-----LCDCPGLVMPSFVFSKADMILNGILPIDQMR------ 401
K + + + +L L + P++ S++D N L I ++
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLY---QIDPNWT-SRSDHSSNIKLRIHSIQAELRRL 237
Query: 402 -------------DHV------PAVNMLC-TLV---PRHVLENIYGIMITQP--DEGEDP 436
+V A N+ C L+ + V + + T D
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 437 NRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYI-----------LKDFVN--GHLLYC 483
P + L Y D PR ++D + + +
Sbjct: 298 LTPDEVKSLLLKY-------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 484 QA--------------PPGVPQEKYH---IFKLKERKPLPKQT-PRAMRALEPNVVRATD 525
P ++ + +F +P + + V
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVM--V 406
Query: 526 IDSKFFKKATGTALVKGRASVVPQGLGKGSMNASTMSLNTISSEDPKPWKQHKEKRNKRE 585
+ +K K + LV+ + ST+S+ +I E K K
Sbjct: 407 VVNKLHKYS----LVEKQP------------KESTISIPSIYLE-------LKVKLENEY 443
Query: 586 KLRKKPVSYY 595
L + V +Y
Sbjct: 444 ALHRSIVDHY 453
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 60.6 bits (147), Expect = 2e-10
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 299 NREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK 358
+E+LI F + + MT+ ++G VGKSST+N+L+ + V VS +
Sbjct: 18 TQEKLIEFFGKLKQKD-----MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGL 72
Query: 359 HFQ--TLFVDD-ELLLCDCPGL 377
+ + + + D PGL
Sbjct: 73 RPVMVSRTMGGFTINIIDTPGL 94
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 59.5 bits (145), Expect = 2e-10
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTK---HFQTLFVDDELLLCDCPG 376
+ VG NVGKSS +NAL N K VS TPGKT+ + V+ + D PG
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPG 77
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 58.7 bits (143), Expect = 4e-10
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 325 IGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTK---HFQTLFVDDELLLCDCPG 376
I L G NVGKSS IN+L+N K S+ PGKT+ + ++DEL D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---INDELHFVDVPG 78
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 57.6 bits (140), Expect = 1e-09
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 325 IGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTK---HFQTLFVDDELLLCDCPG 376
+ G N GKSS +N L N K S TPG+T+ F+ V D L D PG
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VADGKRLVDLPG 81
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 55.8 bits (135), Expect = 4e-09
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL--FVDDELLLCDCPG 376
TI G NVGKS+ I L KKV PG T + + + D PG
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTG-KKVRRGKRPGVT---RKIIEIEWKNHKIIDMPG 53
Score = 32.3 bits (74), Expect = 0.30
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 22/119 (18%)
Query: 163 RQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEV--------SPHKRNMIL-LNKAD 213
+ + DV V +VD + +R + I+ +NK D
Sbjct: 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLD 133
Query: 214 LLTRKQRCY------WTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVS--EESES 264
+ Q + + ++ SA + E L++ + E +
Sbjct: 134 KIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKF-----GDNIERLKNRIFEVIRERQG 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 4e-09
Identities = 101/580 (17%), Positives = 178/580 (30%), Gaps = 190/580 (32%)
Query: 123 AEQLQAMERDEFLQWRRELNLLQEEDGLV-----ITPYE---KNLDFWRQLWRVIERSDV 174
A QL +++F + L + +G TP E K L + + ++E S V
Sbjct: 30 ASQL----QEQFNKI-----LPEPTEGFAADDEPTTPAELVGKFLGY---VSSLVEPSKV 77
Query: 175 IVQIVDARNPLLFRC-EDLER-YVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNV 232
+ +L C + E Y++ H LL + D K + Y + +
Sbjct: 78 -----GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 233 AV---------AFFSATNIYDDIPEGD-----------------EELEDEVVSEESESDE 266
A A F A EG+ EEL D + +
Sbjct: 133 AKRPFDKKSNSALFRAVG------EGNAQLVAIFGGQGNTDDYFEELRD--LYQTYHVLV 184
Query: 267 SEWEDISEE------EEEDDGQKVLENDLKIKSSPKLLNREE-------LISLFKSF--- 310
+ S E D +KV L I L L+S+ S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILE---WLENPSNTPDKDYLLSIPISCPLI 241
Query: 311 ------HDVNIPR---MNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ 361
H V + P + L G + L+ A ++ + + + F
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-----GLVTAVAIAETDSW---ESFF 293
Query: 362 TLFVDD-ELLL---CDC----PGLVMPSFVFSKAD---------MI-LNGILP------I 397
+L C P +P + + M+ ++ + +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 398 DQMRDHVPAVNMLC-TLV--PRH-VL----ENIYGIMIT----QPDEGEDPNRPPFSEEL 445
++ H+PA + +LV ++ V+ +++YG+ +T + G D +R PFSE
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER- 412
Query: 446 CNAYGYNRGFMTSNGQPDNPRSARY-----------ILKDFVNGHLLYCQAPPGVPQEKY 494
NR F+ P ++ + I KD V ++ + +P Y
Sbjct: 413 -KLKFSNR-FL--------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--Y 460
Query: 495 HIFKLKERKPLPKQTPRAMRALEPNVVRATDIDSKF----------FKKAT-----GTAL 539
F +R L ++ +D KAT G
Sbjct: 461 DTF-----------DGSDLRVLSGSISERI-VDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 540 VKGRASVVP---QGLGKGSMNASTMSLNTISSEDPKPWKQ 576
G + G G + A T+ +N +D +KQ
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDIN---PDDDYGFKQ 545
Score = 49.3 bits (117), Expect = 4e-06
Identities = 36/235 (15%), Positives = 72/235 (30%), Gaps = 70/235 (29%)
Query: 413 LVPR------HVLENIYGIMITQPDEGEDPNRPPFSE-ELCNAYGYNRGFMTSNGQPDNP 465
LVP L+ + ++ +P EG + P + EL + G+++S +P
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVEPSKV 77
Query: 466 RSARYILK--------DFVNG---HLLYCQAPPGVPQEKYHIFKLKERKPLPKQTPRAMR 514
+L ++ G H L + L + K L K A
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT------TLVKTKELIKNYITARI 131
Query: 515 ALEPNVVRATDIDSKFFKKATGTALVKGRASVVPQ-GLGKGSMN---------------- 557
+ + ++ S F+ +G A +V G G+G+ +
Sbjct: 132 MAKRPFDKKSN--SALFRAVG-----EGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVL 183
Query: 558 ------ASTMSLNTISSE------------DPKPWKQHKEKRNKREKLRKKPVSY 594
S +L+ + + W ++ ++ L P+S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Score = 39.3 bits (91), Expect = 0.005
Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 62/190 (32%)
Query: 383 VFSKADMILN---GILPIDQMRDHVPAVNMLCTLVP-RHVLENIYGIMITQ-PDEGEDPN 437
V+++AD G +D + ++ + + + + EN Y MI + +G+
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN-YSAMIFETIVDGKLKT 1703
Query: 438 RPPFSE--ELCNAYGYN--RGFM--TSNGQPDNPRSA----RY----ILK--------DF 475
F E E +Y + +G + T QP A LK
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQP-----ALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 476 VNGH-L-----LYCQAPPGV-PQEKYHIFK-----LKER-KPLPKQTPR--------AMR 514
GH L L A V + + R + PR M
Sbjct: 1759 FAGHSLGEYAALASLA--DVMS------IESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 515 ALEPNVVRAT 524
A+ P V A+
Sbjct: 1811 AINPGRVAAS 1820
Score = 28.5 bits (63), Expect = 8.6
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 34/114 (29%)
Query: 12 KALIKNRFG------HKP----------KRVSNDGL-LHTSEL-------EDGYDWNKIN 47
K NRF H K + + + + ++ DG D ++
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 48 LKSVTEESSFQEFLSTAQL---AGTEFTAEKLNITFVNP--KSGVGLLSKEEKE 96
S++E + + + T+F A + + F P SG+G+L+ K+
Sbjct: 473 -GSISE--RIVDCIIRLPVKWETTTQFKATHI-LDF-GPGGASGLGVLTHRNKD 521
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 55.5 bits (133), Expect = 2e-08
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 26/145 (17%)
Query: 273 SEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDV---------- 322
+E D K + K++++E L + NI N +
Sbjct: 9 KSDENNDLPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSS 68
Query: 323 -MTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFV-----DDELLLCDCP 375
+ + + G GKSS IN L +A G + ++ D P
Sbjct: 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLP 128
Query: 376 GLVMPSF---------VFSKADMIL 391
G+ +F F + D +
Sbjct: 129 GIGSTNFPPDTYLEKMKFYEYDFFI 153
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 53.0 bits (127), Expect = 7e-08
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 319 NPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ--TLFVDD-ELLLCDCP 375
+ + +TI ++G VGKSST+N+++ + VS+S + + L + D P
Sbjct: 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTP 95
Query: 376 GL 377
GL
Sbjct: 96 GL 97
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 52.3 bits (126), Expect = 7e-08
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 325 IGLVGYPNVGKSSTINALLNAKK-VSVSATPGKTK---HFQ-TLFVDDELLLCDCPG 376
I G N GKS+ IN L N K+ S TPG+T+ +F + L D PG
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPG 88
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 51.7 bits (124), Expect = 2e-07
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 307 FKS------FHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF 360
+ +P +NP TI L G PNVGKSS +N + A V V + TK+
Sbjct: 8 HHHSSGRENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRA-NVDVQSYSFTTKNL 66
Query: 361 Q---TLFVDDELLLCDCPGLV 378
++ + D PGL+
Sbjct: 67 YVGHFDHKLNKYQIIDTPGLL 87
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 49.1 bits (118), Expect = 3e-06
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 271 DISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGY 330
D +E E + G+ + L+ ++ +E+L K + + + +VG
Sbjct: 204 DYPDEIETNTGE--VVTRLE-----RI--KEKLTEELKKADAGILLN---RGLRMVIVGK 251
Query: 331 PNVGKSSTINALLNAKKVSVSATPGKT 357
PNVGKS+ +N LLN + V+ PG T
Sbjct: 252 PNVGKSTLLNRLLNEDRAIVTDIPGTT 278
Score = 45.2 bits (108), Expect = 4e-05
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 166 WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTK 225
+ IE++D+++ ++DA +PL ++ +R + E +KR ++++NK D++ +
Sbjct: 318 LQEIEKADIVLFVLDASSPL----DEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKN 373
Query: 226 YFNSVNVAVAFFSATNIYDDIPEGDEELED---EVVSEESESDESEW 269
+ V SA EG E+LE+ E E
Sbjct: 374 KLGTDRHMV-KISALK-----GEGLEKLEESIYRETQEIFERGSDSL 414
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 48.3 bits (116), Expect = 5e-06
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 271 DISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGY 330
D SEE+ E + L ++ L R E+ L S+ I + ++ + G
Sbjct: 192 DFSEEDVEFQSRDELTMQIE-----TL--RSEVNRLIDSYQHGRIVS---EGVSTVIAGK 241
Query: 331 PNVGKSSTINALLNAKKVSVSATPGKT 357
PN GKS+ +N LL ++ VS PG T
Sbjct: 242 PNAGKSTLLNTLLGQERAIVSHMPGTT 268
Score = 44.8 bits (107), Expect = 7e-05
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 166 WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTK 225
+ +D+I+ ++D L R +K P + + + NK D
Sbjct: 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADA-LIRA 365
Query: 226 YFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVS 259
+ V SA N +G + L+ +
Sbjct: 366 IADGTGTEVIGISALN-----GDGIDTLKQHMGD 394
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 47.7 bits (114), Expect = 6e-06
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH-----------FQTLFVD 366
I + G NVGKSS +NAL+ VS G T VD
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVD 89
Score = 32.7 bits (75), Expect = 0.31
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 21/130 (16%)
Query: 163 RQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMIL-LNKADLLTRKQRC 221
+ RV R+D + + D+ + + V + ++ +NK D+L K
Sbjct: 105 EKARRVFYRADCGILVTDSAPTP----YE-DDVVNLFKEMEIPFVVVVNKIDVLGEKAEE 159
Query: 222 YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDG 281
Y + V SA +G +++ + +EE G
Sbjct: 160 LKGLYESRYEAKVLLVSALQK-----KGFDDIGKTISEILPG----------DEEIPYLG 204
Query: 282 QKVLENDLKI 291
+ DL I
Sbjct: 205 DLIDGGDLVI 214
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 47.1 bits (113), Expect = 1e-05
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 271 DISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGY 330
D E+ D + ++ + I E+ L + + R + + +VG
Sbjct: 184 DFEEDLPPLDDEAIISDIENI--------AAEISQLLATKDKGELLR---TGLKVAIVGR 232
Query: 331 PNVGKSSTINALLNAKKVSVSATPGKT 357
PNVGKSS +NA + + V+ PG T
Sbjct: 233 PNVGKSSLLNAWSQSDRAIVTDLPGTT 259
Score = 43.6 bits (104), Expect = 1e-04
Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 166 WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTK 225
+ +D+++ +DA ++ + E H+ ++++NK DL+ ++
Sbjct: 298 RQAANTADLVLLTIDAATGW----TTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEY 353
Query: 226 YFNSVNVAVAFFSATNIYDDIPEGDEELEDE----VVSEESESDESEW 269
N + +A +G + LE V + + ++ + +
Sbjct: 354 PENITQ--IVHTAAAQ-----KQGIDSLETAILEIVQTGKVQAADMDL 394
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 46.7 bits (112), Expect = 2e-05
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 306 LFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
+ + F ++ + N +V+ L+G PNVGKSS +NA+L ++V VS G T
Sbjct: 159 VAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 210
Score = 35.9 bits (84), Expect = 0.033
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
+ +VG PNVGKS+ N + + V TPG T
Sbjct: 5 VVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVT 38
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 43.7 bits (104), Expect = 3e-05
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
M + + G PN GKSS +NAL + V+ G T
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 39
Score = 39.8 bits (94), Expect = 7e-04
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 17/98 (17%)
Query: 166 WRVIERSDVIVQIVDARNPLLFRCED---LERYVKEVSPHKRNMILLNKADLLTRKQRCY 222
W+ IE++D ++ +VD + ++ + ++ NKAD+
Sbjct: 78 WQEIEQADRVLFMVDGTTTD--AVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMS 135
Query: 223 WTKYFNSVNVAVAFFSA-TNIYDDIPEGDEELEDEVVS 259
+ + SA T EG + L + +
Sbjct: 136 EVNGHALIRL-----SARTG------EGVDVLRNHLKQ 162
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 45.2 bits (108), Expect = 4e-05
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
D + + +VG PNVGKS+ NA+LN ++ VS PG T
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT 215
Score = 35.6 bits (83), Expect = 0.045
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
T+ +VG PNVGKS+ N L+ KK V G T
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVT 36
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 42.6 bits (101), Expect = 2e-04
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAK 346
M IG+VG PNVGKS+ +A
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVD 24
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 42.1 bits (100), Expect = 4e-04
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAK 346
+ + IG+VG PNVGKS+ N L N++
Sbjct: 19 FGTS---LKIGIVGLPNVGKSTFFNVLTNSQ 46
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 42.2 bits (100), Expect = 4e-04
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 16/127 (12%)
Query: 169 IERSDVIVQIVD-ARNPLLFRCEDLERYVKEVSPH-----KRNMIL-LNKADLLTRKQRC 221
I R+ V++ ++D A PL + LE KEV + +R ++ LNK DLL +
Sbjct: 233 IARTRVLLYVLDAADEPL----KTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVK 288
Query: 222 YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDG 281
+AV SA G L++ + + + E +E G
Sbjct: 289 ALADALAREGLAVLPVSALT-----GAGLPALKEALHALVRSTPPPEMPKPVPRKEVQAG 343
Query: 282 QKVLEND 288
+V+
Sbjct: 344 VEVVPVA 350
Score = 40.6 bits (96), Expect = 0.001
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 321 DVMTIGLVGYPNVGKSSTINALLNAK 346
DV GLVGYPN GKSS + A+ A
Sbjct: 159 DV---GLVGYPNAGKSSLLAAMTRAH 181
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 41.7 bits (99), Expect = 5e-04
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKK 347
P N + G+VG PNVGKS+ A+ +
Sbjct: 17 PGNN---LKTGIVGMPNVGKSTFFRAITKSVL 45
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 41.8 bits (98), Expect = 5e-04
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELL--- 370
++P ++ ++ T+ + G+PNVGKS+ + AL A K +++ P T+ +D
Sbjct: 159 DLPVVDLEIPTVVIAGHPNVGKSTLLKALTTA-KPEIASYPFTTRGINVGQFEDGYFRYQ 217
Query: 371 LCDCPGL 377
+ D PGL
Sbjct: 218 IIDTPGL 224
Score = 36.7 bits (85), Expect = 0.015
Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 8/126 (6%)
Query: 156 EKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSP---HKRNMILLNKA 212
E+N + + + ++I+ I D F E+ +EV ++++NK
Sbjct: 231 ERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKI 290
Query: 213 DLLTRKQRCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDI 272
D+ + K+ + SA G + +++E++ E +
Sbjct: 291 DVADEENIKRLEKFVKEKGLNPIKISALK-----GTGIDLVKEEIIKTLRPLAEKVAREK 345
Query: 273 SEEEEE 278
E E
Sbjct: 346 IERELR 351
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 40.9 bits (97), Expect = 6e-04
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 12/53 (22%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKH----------FQTLFVD 366
I +VG PNVGKS+ +N LL +K+S S T+H +Q ++VD
Sbjct: 11 IAIVGRPNVGKSTLLNKLLG-QKISITSRKAQTTRHRIVGIHTEGAYQAIYVD 62
Score = 28.2 bits (64), Expect = 7.7
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 166 WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMIL-LNKADLLTRKQR 220
I ++++ +V+ D E + ++ K +IL +NK D + K
Sbjct: 83 SSSIGDVELVIFVVEGTRWT----PDDEMVLNKLREGKAPVILAVNKVDNVQEKAD 134
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 41.3 bits (98), Expect = 7e-04
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAK 346
+ +G+VG PNVGKS+ NAL A
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRAN 25
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 39.4 bits (93), Expect = 8e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPG 376
I L+G PNVGKS+ NAL V + PG T K + + ++ + D PG
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGE-NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
Score = 28.2 bits (64), Expect = 5.5
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 18/56 (32%)
Query: 170 ERSDVIVQIVDARNPLLFRCEDLER--Y----VKEVSPHKRNMIL-LNKADLLTRK 218
E+ D++V IVDA LER Y + E+ N++L LNK DL
Sbjct: 80 EKPDLVVNIVDATA--------LERNLYLTLQLMEM---GANLLLALNKMDLAKSL 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 39.8 bits (94), Expect = 8e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPG 376
I L+G PNVGKS+ NAL V + PG T K + + ++ + D PG
Sbjct: 8 YEIALIGNPNVGKSTIFNALTGE-NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
Score = 27.9 bits (63), Expect = 7.3
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 18/56 (32%)
Query: 170 ERSDVIVQIVDARNPLLFRCEDLER--Y----VKEVSPHKRNMIL-LNKADLLTRK 218
E+ D++V IVDA LER Y + E+ N++L LNK DL
Sbjct: 84 EKPDLVVNIVDATA--------LERNLYLTLQLMEM---GANLLLALNKMDLAKSL 128
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 40.1 bits (95), Expect = 0.001
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKH----------FQTLFVD 366
+ +VG PNVGKS+ +N LL KV+ +S P T+ Q +FVD
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVD 61
Score = 30.9 bits (71), Expect = 1.2
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 17/112 (15%)
Query: 166 WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC--YW 223
+ + + +V +VD R+P E + R +K + +++ NK D + +
Sbjct: 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAY 140
Query: 224 TKYFNSVNVAVAFFSATN----------IYDDIPEGDEEL--EDEVVSEESE 263
+ SA + + +PEG ED S+++
Sbjct: 141 HELLP--EAEPRMLSALDERQVAELKADLLALMPEG-PFFYPEDYAKSDQTF 189
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 40.0 bits (94), Expect = 0.001
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPG 376
++ + L G PNVGK+S NAL K V+ PG T K + + L D PG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGT-KQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 40.2 bits (95), Expect = 0.001
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVS-VSATPGKTKH-----------FQTLFVD 366
+ +VG PNVGKS+ +N LL KVS +S G T+ Q +F+D
Sbjct: 13 VAIVGKPNVGKSTLLNNLLG-TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLD 65
Score = 29.4 bits (67), Expect = 3.3
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 166 WRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMIL-LNKADLLTRKQR 220
+ +E +DVI+ ++DA +R D E Y + P + +I+ +NK D + +
Sbjct: 87 KQSLEEADVILFMIDATEG--WRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKN 140
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPG 376
T+ LVG PNVGK++ NAL + V PG T K + + E L+ D PG
Sbjct: 5 TVALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPG 59
Score = 28.1 bits (63), Expect = 7.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 17/56 (30%)
Query: 170 ERSDVIVQIVDARNPLLFRCEDLER--Y----VKEVSPHKRNMIL-LNKADLLTRK 218
+DVIV IVD+ L R + + E+ +N+IL LNK DLL +K
Sbjct: 80 GNADVIVDIVDSTC--------LMRNLFLTLELFEM--EVKNIILVLNKFDLLKKK 125
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 39.9 bits (94), Expect = 0.002
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 3/26 (11%)
Query: 321 DVMTIGLVGYPNVGKSSTINALLNAK 346
DV GLVG+P+VGKS+ ++ + +AK
Sbjct: 160 DV---GLVGFPSVGKSTLLSVVSSAK 182
Score = 31.0 bits (71), Expect = 1.1
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 26/122 (21%)
Query: 169 IERSDVIVQIVDA-----RNPLLFRCED-------LERYVKEVSPHKRNMILLNKADLLT 216
IER+ VIV ++D R+P +D L Y ++ + +I+ NK D+
Sbjct: 234 IERTRVIVHVIDMSGLEGRDPY----DDYLTINQELSEYNLRLT-ERPQIIVANKMDMPE 288
Query: 217 RKQRCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEE 276
+ K + + V SA EG EL EV ++ + E +E
Sbjct: 289 AAENLEAFKEKLTDDYPVFPISAVT-----REGLRELLFEVANQLENTPEFP----LYDE 339
Query: 277 EE 278
EE
Sbjct: 340 EE 341
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 38.8 bits (91), Expect = 0.004
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 317 RMNPDVMTIGLVGYPNVGKSSTINALLNA 345
++ +IG+VGY N GK+S N+L
Sbjct: 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGL 202
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 38.4 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 322 VMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT--KHFQTLFVDDELLLCDCPG 376
+ I L+G PN GK+S N + V PG T + + + +L + D PG
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGH-NQRVGNWPGVTVERKSGLVKKNKDLEIQDLPG 58
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 38.8 bits (89), Expect = 0.005
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 267 SEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIG 326
++ + + + +L SS L+ E I + V +
Sbjct: 18 AQVRSEMSVCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASK----NLQQGVFRLL 73
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSATP 354
++G GKS+ +NAL+ + P
Sbjct: 74 VLGDMKRGKSTFLNALIGENLLPSDVNP 101
Score = 30.7 bits (68), Expect = 1.8
Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 5/184 (2%)
Query: 100 QAHKEKRELLKIPRRPKWDKNTTAEQLQAMERDEFLQWRRELNLLQEEDGLVITPYEKNL 159
Q + K P K E+ QA ++ L LLQ+ +V +P +
Sbjct: 128 QQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDT 187
Query: 160 DFWRQLW-RVIERSDVIVQIVDARNPL-LFRCEDLERYVKEVSPHKRNMILLNKADLLTR 217
+ +L + I+ ++ A P L LE Y+K L+N D +
Sbjct: 188 EARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRE 245
Query: 218 KQRCY-WTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEE 276
+ + + N+ + + + DE V E S + +
Sbjct: 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305
Query: 277 EEDD 280
+ D
Sbjct: 306 DLDG 309
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 37.7 bits (87), Expect = 0.006
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 319 NPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPG---KTKHFQTLFVDD-ELLLCDC 374
+ I LVG GKS+T N++L K K ++ + EL++ D
Sbjct: 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDT 85
Query: 375 PGL 377
PG+
Sbjct: 86 PGI 88
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 37.7 bits (88), Expect = 0.007
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPG 376
+TIGL+G PN GK++ N L + + V G T K Q D ++ L D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 36.7 bits (86), Expect = 0.007
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
+ +VG PNVGKSS N LL + V+ PG T
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVT 36
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 37.8 bits (89), Expect = 0.008
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 324 TIGLVGYPNVGKSSTINALLNAK 346
G+VG PNVGKS+ NAL A
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAG 26
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 36.9 bits (86), Expect = 0.011
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT---KHFQTLFVDDELLLCDCPG 376
L+G PN GK++ NAL NA V PG T K + L + + + D PG
Sbjct: 3 HALLIGNPNCGKTTLFNALTNA-NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPG 57
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 35.0 bits (80), Expect = 0.051
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 319 NPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP-GKTKHFQTLFV---DDELLLCDC 374
+ LVG GKS+T N++L ++ T+ T + + D
Sbjct: 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDT 77
Query: 375 PGL 377
P +
Sbjct: 78 PDI 80
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 34.6 bits (79), Expect = 0.069
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGK-TKHFQ--TLFVDD-ELLL 371
+ + I LVG GKS+ N++L + TK + E+++
Sbjct: 16 QCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVI 75
Query: 372 CDCPGL 377
D P +
Sbjct: 76 IDTPDM 81
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 33.5 bits (76), Expect = 0.16
Identities = 10/64 (15%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVK---EVSPHKRNMILLNKADLLT 216
+ R+ + +V ++D+++ + +L ++ +V+P +L++K D L+
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 217 RKQR 220
+
Sbjct: 121 EDFK 124
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.17
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 248 EGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREE 302
E + L++ S+ E EW + ++++ E+ Q+ E K K + NR
Sbjct: 93 EQRKRLQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN----NRIA 141
Score = 29.7 bits (66), Expect = 2.1
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 14/55 (25%)
Query: 91 SKEEKELALQAHKEKRELLKIPRRPKWDK--NTTAEQLQAMERD---EFLQWRRE 140
E+E +A K+ E W++ + E+ + R F Q
Sbjct: 106 KVMEQEWREKAKKDLEE---------WNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 33.6 bits (76), Expect = 0.21
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNM-ILLNKADLLTRK 218
DF L ER D+I+ + DA + ++ + + H+ + ++LNKAD++ +
Sbjct: 177 DFPAVLRWFAERVDLIILLFDAHKLEI--SDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234
Query: 219 QR 220
Q
Sbjct: 235 QL 236
Score = 29.0 bits (64), Expect = 5.1
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 273 SEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRM-NPDVM---TIGLV 328
+ + + + + LK KLL EE F + P + + D + +
Sbjct: 16 GARGQRPEAIRTVTSSLKELYRTKLLPLEEHYR----FGSFHSPALEDADFDGKPMVLVA 71
Query: 329 GYPNVGKSSTINALL 343
G + GK+S I LL
Sbjct: 72 GQYSTGKTSFIQYLL 86
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 32.6 bits (74), Expect = 0.25
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 160 DFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVK---EVSPHKRNMILLNKADLLT 216
D + + ++ ++DA++ + L V +V+P + ++K D L+
Sbjct: 84 DPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143
Query: 217 RKQR 220
+
Sbjct: 144 DDHK 147
Score = 27.6 bits (61), Expect = 8.6
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKK----VSVSATPGKTKHFQTLFVDDELLL 371
I L+G GKSS + + + + +T K + +
Sbjct: 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQI 73
Query: 372 CDCPG 376
D PG
Sbjct: 74 WDFPG 78
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 32.9 bits (75), Expect = 0.25
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 323 MTIGLVGYPNVGKSSTINALLNA-----KKVSVSA 352
+G+ G P VGKS+ I AL +V+V A
Sbjct: 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 32.8 bits (75), Expect = 0.29
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 323 MTIGLVGYPNVGKSSTINALLNA-----KKVSVSA 352
+ +G+ G P VGKS+TI+AL + KV+V A
Sbjct: 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.9 bits (75), Expect = 0.29
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 323 MTIGLVGYPNVGKSSTINALLNA-----KKVSVSA 352
+ +G+ G P GKS+ + A KV+V A
Sbjct: 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 32.5 bits (75), Expect = 0.29
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 333 VGKSSTINALLNAK-KVS-VSATPGKTKH---FQTLF-VDDELLLCDCPG 376
VGKSS ++ L + + VS + +H L + D PG
Sbjct: 176 VGKSSILSRLTGEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 32.9 bits (75), Expect = 0.30
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 323 MTIGLVGYPNVGKSSTINALLNA-----KKVSVSA 352
+GL G P GKS+ I K+SV A
Sbjct: 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 32.9 bits (75), Expect = 0.31
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 241 NIYDDIPEGDEELEDEVVSEES--ESDESEWEDISEEEEEDDGQKVLEND-----LKIKS 293
+ P+ D E D + ++ +E E D+ EEEE+ K+ +D L
Sbjct: 30 EFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLDLEEEEEDLPIPKISTSDPVRQYLHEIG 89
Query: 294 SPKLLNREELISLFKSFHDVNIPRMNPDVMT 324
LL EE + L + + +T
Sbjct: 90 QVPLLTLEEEVELARKVEEGMEAIKKLSEIT 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.32
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 9/35 (25%)
Query: 492 EKYHIFKLKER-KPL-PKQTPRAMRALEPNVVRAT 524
EK + KL+ K P AL ++AT
Sbjct: 18 EKQALKKLQASLKLYADDSAP----AL---AIKAT 45
Score = 31.1 bits (69), Expect = 0.54
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 278 EDDGQKVLENDLKI---KSSPKL-LN 299
E K L+ LK+ S+P L +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus,
SSV, archaeal, crenarchaeal, helix-turn-helix, four
helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Length = 69
Score = 29.7 bits (66), Expect = 0.38
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 94 EKELALQAHKEKRELLKIPRRPKWDKNTTAEQLQAMERDEFLQWRRELNLLQ 145
EKEL ++ RELL + K D+ T Q + + F + E L Q
Sbjct: 7 EKELFEMLDEDVRELLSLIHEIKIDRITGNMDKQKLGKAYFQVQKIEAELYQ 58
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.2 bits (74), Expect = 0.43
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 333 VGKSSTINAL---LNAKKVSVSATPGKTKH---FQTLFVDDELLLCDCPG 376
VGKSS +NA+ L + +S G+ KH L L+ D PG
Sbjct: 184 VGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPG 233
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 31.7 bits (73), Expect = 0.51
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 333 VGKSSTINALLNAKKV---SVSATPGKTKH---FQTLF-VDDELLLCDCPG 376
VGKSS +NA+ K+ VS + +H L D + D PG
Sbjct: 180 VGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 31.9 bits (72), Expect = 0.62
Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 22/152 (14%)
Query: 267 SEW-----EDISEEEEEDDGQKVLENDLKIKSSPKLLNR------EELISLFKSFHDVNI 315
+ D+ + + G + + + L+ + K NI
Sbjct: 108 EQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVY-NI 166
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLN---AKKVSVSATPGKTKHFQTLFVDDELLLC 372
P+ G + GK++ ALL K ++V+ + + +D L++
Sbjct: 167 PKKR----YWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVF 222
Query: 373 DCPGLVMPSFVFSKADMILNGILPIDQMRDHV 404
+ V + S+ GI +D +RD++
Sbjct: 223 E---DVKGTGGESRDLPSGQGINNLDNLRDYL 251
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 31.4 bits (70), Expect = 0.84
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 233 AVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQK 283
AV +F+ + + E +EE DE EE + D +D E EE D
Sbjct: 356 AVDWFTGAALEFEFEEDEEE-ADEDEDEEEDDDHGLEDDDGESAEEQDDFA 405
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 29.9 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 244 DDIPEGDEELEDEVVSEESESDESEWEDISEEEEED 279
+ E +EE DE E+ + D+ + +D EEEEE+
Sbjct: 37 AEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 27.6 bits (60), Expect = 7.6
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 244 DDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKV 284
+ EG+E+ E+ +E E ++ + +D +E+EE++ +
Sbjct: 34 EKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVT 74
Score = 27.2 bits (59), Expect = 8.9
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 232 VAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDD 280
VA A +++ EE E+E E+ + DE E +D ++E+E++
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEE 69
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.5 bits (68), Expect = 1.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ 361
T+ +VG +GKS+ IN+L G + +
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIE 57
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 30.3 bits (69), Expect = 1.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 333 VGKSSTINALL---NAKKVS-VSATPGKTKH---FQTLF-VDDELLLCDCPG 376
VGKSS +NALL N + VS G +H L+ + D PG
Sbjct: 226 VGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPG 277
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.6 bits (66), Expect = 3.3
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVK------EVSPHKRNMILLNKADL 214
F +Q + + V++ + D + + +D+E + K + SP + +LL+K DL
Sbjct: 70 FTKQKDHIFQMVQVLIHVFDVESTEVL--KDIEIFAKALKQLRKYSPDAKIFVLLHKMDL 127
Query: 215 LTRKQR 220
+ +R
Sbjct: 128 VQLDKR 133
Score = 28.8 bits (64), Expect = 4.6
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD----ELLLCDCP 375
P + L+G GKSS + + + + G T + + L L DC
Sbjct: 1 PLGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCG 60
Query: 376 G 376
G
Sbjct: 61 G 61
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 28.5 bits (63), Expect = 3.4
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 244 DDIPEGDEELEDEVVSEESESD--ESEWEDISEEEEEDDGQKVLEND 288
+ +G+E ED V S+ + E + + E + +G+ ++
Sbjct: 6 EAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGG 52
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.4 bits (65), Expect = 3.4
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ 361
T+ +VG +GKS+ IN+L + PG + +
Sbjct: 10 TLMVVGESGLGKSTLINSLFL-TDLYSPEYPGPSHRIK 46
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 29.3 bits (66), Expect = 3.5
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 258 VSEESESDESEWEDISEEEEEDDGQKVLENDLK 290
+ E D E+ ++ E+E ++++
Sbjct: 352 QAYE---DSHEFIHLAGPEDEHKAERLVLEAKT 381
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 28.7 bits (64), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF 360
IP+ N + +G PN GKS N+L++ SV + HF
Sbjct: 122 GIPKKN----CLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHF 164
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 28.7 bits (64), Expect = 5.4
Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 240 TNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLN 299
+++ + + E + + S+ S+ + +E+E+++ D P+L
Sbjct: 50 SDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR 109
Query: 300 R--EELISLFKSFHDV 313
EL + + D
Sbjct: 110 EKFAELRAQYVVTRDT 125
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 28.8 bits (65), Expect = 5.6
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 509 TPRAMRALEPNVVRATD 525
+P M+ L A D
Sbjct: 119 SPATMKRLRDGFAAAAD 135
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 28.4 bits (63), Expect = 5.8
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSV-SATPGKTKHFQTLFVDDELLLCDCPGLV 378
MT+ ++G N+GK + L N +K+ L DE + V
Sbjct: 13 MTVLIIGMGNIGK--KLVELGNFEKIYAYDRISKDIPGVVRL---DEFQVPSDVSTV 64
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 28.4 bits (64), Expect = 7.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 509 TPRAMRALEPNVVRATD 525
TPR + LEP + T
Sbjct: 107 TPRTISDLEPRIRDVTR 123
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 28.4 bits (64), Expect = 7.6
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 509 TPRAMRALEPNVVRATD 525
+P A + ++T+
Sbjct: 104 SPEATDLFTEQLRQSTN 120
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 27.9 bits (62), Expect = 7.7
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 267 SEWEDISEEEEEDDGQ-KVLENDLKIKSSPKLLNREELISLFKSFHDV--NIPRMNPDVM 323
S+W + ++ G + + L+ + E I+ + P+ N
Sbjct: 11 SQWIRFRCSKIDEGGDWRPIVQFLR-------YQQIEFITFLGALKSFLKGTPKKN---- 59
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF 360
+ G N GKS + ++ + +V + T HF
Sbjct: 60 CLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHF 96
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.7 bits (61), Expect = 7.8
Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 6/124 (4%)
Query: 319 NPDVMTIGLVGYPNVGKSSTINAL---LNAKKVSVSA---TPGKTKHFQTLFVDDELLLC 372
+ + +VGY + GK++ + + V + + VD
Sbjct: 1 SNAMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHER 60
Query: 373 DCPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDE 432
+ + +D + + + LV + E +++ + +E
Sbjct: 61 AGAVATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEE 120
Query: 433 GEDP 436
Sbjct: 121 DWAS 124
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 28.4 bits (62), Expect = 7.8
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 244 DDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQK 283
D+ E+ ES+ S + D + + ++
Sbjct: 303 SDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDD 342
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 28.3 bits (62), Expect = 8.6
Identities = 12/84 (14%), Positives = 24/84 (28%)
Query: 228 NSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLEN 287
N + + D E E+ +E +++E + EDD N
Sbjct: 169 NKAAALLMLTKNVDFVKDAHEEMEQAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPSN 228
Query: 288 DLKIKSSPKLLNREELISLFKSFH 311
S ++L ++
Sbjct: 229 QDLYWSEDDQELIIPCLALVRASK 252
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.2 bits (62), Expect = 9.7
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATP-GKTKHFQTLFVDDE-------LLLCDCP 375
I VG +GKS+ ++ L N K AT Q+ D + L +
Sbjct: 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103
Query: 376 GL 377
G
Sbjct: 104 GF 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.391
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,119,660
Number of extensions: 562433
Number of successful extensions: 1588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1534
Number of HSP's successfully gapped: 164
Length of query: 595
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 496
Effective length of database: 3,937,614
Effective search space: 1953056544
Effective search space used: 1953056544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.8 bits)