RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9995
(595 letters)
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 147 bits (371), Expect = 8e-41
Identities = 65/318 (20%), Positives = 112/318 (35%), Gaps = 60/318 (18%)
Query: 163 RQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCY 222
R++ ++ D++ ++VDAR P+ R +E +K +K ++LLNKAD
Sbjct: 7 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQ 62
Query: 223 WTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQ 282
W ++F E+ G
Sbjct: 63 WKEHF--------------------------------------------------ENQGI 72
Query: 283 KVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINAL 342
+ L + + L + F + + P + ++G PNVGKS+ IN L
Sbjct: 73 RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRL 132
Query: 343 LNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRD 402
PG T Q + V EL L D PG++ P F + L ++D
Sbjct: 133 AKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRL---AVTGAIKD 189
Query: 403 HVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYGYNRGFMTSNGQP 462
+ + + R LE Y + + ++ P EL +A G RG + S G
Sbjct: 190 SIINLQDVAVFGLR-FLEEHYPERLKERYGLDEI--PEDIAELFDAIGEKRGCLMSGGLI 246
Query: 463 DNPRSARYILKDFVNGHL 480
+ ++ I++D
Sbjct: 247 NYDKTTEVIIRDIRTEKF 264
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 54.7 bits (130), Expect = 3e-09
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQ 361
TI G NVGKS+ I L KKV PG T+
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTG-KKVRRGKRPGVTRKII 38
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 52.8 bits (125), Expect = 1e-08
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH 359
T+ +VG PNVGKS+ N L+ KK V G T+
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRD 37
Score = 29.3 bits (64), Expect = 0.84
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 161 FWRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQR 220
+I +D+++ +VD + + E L ++++ + + NKA+ L +R
Sbjct: 70 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA--NKAENLREFER 127
Query: 221 CYWTKYFNSVNVAVAFFSATN----------IYDDIPEGDEELE 254
+ ++ SA + I + E +LE
Sbjct: 128 EVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 51.2 bits (121), Expect = 4e-08
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH---FQTLFVDDELLLCDCPGLV 378
+GLVGYPN GKSS + A+ A + ++ L D PG++
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60
Score = 30.4 bits (67), Expect = 0.44
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 151 VITPYEKNLDFWRQLWRVIERSDVIVQIVDARNPLLFRCEDLE---RYVKEVSPHKRNMI 207
+I + + R I R+ V++ ++DA + L E L + +++
Sbjct: 59 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118
Query: 208 LLNKADLLTRKQRCYWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSEESESDES 267
LNK DLL + +AV SA G L++ + + +
Sbjct: 119 ALNKVDLLEEEAVKALADALAREGLAVLPVSALT-----GAGLPALKEALHALVRSTPPP 173
Query: 268 EWE 270
E
Sbjct: 174 EMP 176
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 51.4 bits (122), Expect = 1e-07
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 315 IPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDE---LLL 371
+ + + + +TI ++G VGKSST+N+++ + VS+S + + L +
Sbjct: 25 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNI 84
Query: 372 CDCPGLVMPSFVFSKADMILNGILPIDQMRDHV 404
D PGL+ ++ A I+ L + +
Sbjct: 85 IDTPGLIEGGYINDMALNIIKSFLLDKTIDVLL 117
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 49.5 bits (117), Expect = 1e-07
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH----FQTLFVDDELLLCDCPGLV- 378
+GLVG+P+VGKS+ ++ + +A K ++ T ++ D PGL+
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSA-KPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 61
Query: 379 MPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPN 437
L I + + + L + E P
Sbjct: 62 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 120
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 49.3 bits (116), Expect = 2e-07
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF 360
I +VG PNVGKS+ +N LL K S T+H
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR 43
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 51.3 bits (122), Expect = 2e-07
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 13/125 (10%)
Query: 264 SDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVM 323
S + + + Q++L I+ + N + S + ++ V+
Sbjct: 5 SSFTGYFKKFNTGRKIISQEILN---LIELRMRAGNIQLTNSAISD----ALKEIDSSVL 57
Query: 324 TIGLVGYPNVGKSSTINALLN----AKKVSVSATPGKTK--HFQTLFVDDELLLCDCPGL 377
+ + G GKSS IN L + + + T H ++ D PG+
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117
Query: 378 VMPSF 382
+F
Sbjct: 118 GSTNF 122
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 48.8 bits (115), Expect = 2e-07
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFV---DDELLLCDCPGL 377
+ + +VG PNVGKS+ +N LLN + V+ PG T+ + + + D G+
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV 58
Score = 29.6 bits (65), Expect = 0.66
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 162 WRQLWRVIERSDVIVQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRC 221
+ + IE++D+++ ++DA +P ++ +R + E +KR ++++NK D++ +
Sbjct: 71 IERTLQEIEKADIVLFVLDASSP----LDEEDRKILERIKNKRYLVVINKVDVVEKINEE 126
Query: 222 YWTKYFNSVNVAVAFFSATNIYDDIPEGDEELEDEVVSE 260
+ + + SA EG E+LE+ + E
Sbjct: 127 EIKNKLGT-DRHMVKISALK-----GEGLEKLEESIYRE 159
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 48.5 bits (114), Expect = 4e-07
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH 359
P + D + + +VG PNVGKS+ NA+LN ++ VS PG T+
Sbjct: 3 PEIT-DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD 45
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 47.8 bits (112), Expect = 6e-07
Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 12/127 (9%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD------------ELLL 371
+ +VG PNVGKS+ +N LL K +S P T+ + +
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66
Query: 372 CDCPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPD 431
D G M V+ + + +D P ++ + V + ++ + D
Sbjct: 67 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126
Query: 432 EGEDPNR 438
+ P
Sbjct: 127 AAKYPEE 133
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 47.0 bits (110), Expect = 8e-07
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKH 359
M + + G PN GKSS +NAL + V+ G T+
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRD 38
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 46.7 bits (109), Expect = 2e-06
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 296 KLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVS-VSATP 354
K+ E +IS K P + I L G NVGKSS IN+L+N K ++ S+ P
Sbjct: 2 KVTKSEIVISAVKPEQ---YPE--GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKP 56
Query: 355 GKTKHFQTLFVDDELLLCDCPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLC 411
GKT+ ++DEL D PG S+ + I R+ + AV +
Sbjct: 57 GKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIV 113
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 47.1 bits (111), Expect = 2e-06
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKT 357
P N + G+VG PNVGKS+ A+ + + + P T
Sbjct: 7 PGNN---LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYAT 45
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 44.9 bits (105), Expect = 1e-05
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAK 346
M IG+VG PNVGKS+ +A
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVD 24
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 42.6 bits (100), Expect = 7e-05
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAK 346
G+VG PNVGKS+ NAL A
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAG 26
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 40.5 bits (93), Expect = 2e-04
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 320 PDVMTIGLVGYPNVGKSSTINALLNAKKVSVSA-TPGKTKHFQTLFVDDELLLCDCPGLV 378
+ + G N GKSS +N L N K ++ ++ TPG+T+ V D L D PG
Sbjct: 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73
Query: 379 MPSFVFSKADMILNGILPIDQMRDHVPAVNMLC 411
+ + R + + +L
Sbjct: 74 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLM 106
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 39.4 bits (91), Expect = 3e-04
Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 6/118 (5%)
Query: 325 IGLVGYPNVGKSSTINALLNA------KKVSVSATPGKTKHFQTLFVDDELLLCDCPGLV 378
+VGY + GK++ + + A + +V + + VD
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63
Query: 379 MPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDP 436
+ + +D + + + LV + E +++ + +E
Sbjct: 64 AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWAS 121
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 39.3 bits (91), Expect = 7e-04
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSAT-------PGKTKHFQTLFVDDELLLCDCPGLVM 379
+ G VGKSS +NA+ K+ VS T Q L D + D PG
Sbjct: 100 MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 159
Query: 380 PSFVFSKADMILNGILPI 397
+ + + +
Sbjct: 160 LEINDIEPEELKHYFKEF 177
Score = 28.1 bits (62), Expect = 2.9
Identities = 8/74 (10%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 173 DVIVQIVDARNPLLFRCEDLERY-VKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVN 231
D ++ +V + P ++++ V ++++NK DL + +
Sbjct: 12 DQVILVVTVKMPE-TSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 70
Query: 232 VAVAFFSATNIYDD 245
+
Sbjct: 71 GLYPIVKTSAKTGM 84
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 36.7 bits (84), Expect = 0.003
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 10/140 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDE---LLLCDCPGL--- 377
+ L+G VGK+ + + +T G +T+ +D + L + D G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
Query: 378 -VMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDP 436
+ + + A I+ ++ + + H ++ +++ + D
Sbjct: 69 RTITTAYYRGAMGIM--LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 437 NRPPFSEELCNAYGYNRGFM 456
+ A Y FM
Sbjct: 127 RQVSKERGEKLALDYGIKFM 146
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 36.6 bits (84), Expect = 0.004
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 12/139 (8%)
Query: 271 DISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGY 330
D+ E+++ +D + D + L S +I D T+ G
Sbjct: 52 DLIEDQDTEDTIQAYAEDYRNIGYDV-----YLTSSKDQDSLADIIPHFQDKTTV-FAGQ 105
Query: 331 PNVGKSSTINALL---NAKKVSVSATPGKTKH---FQTLFVDDELLLCDCPGLVMPSFVF 384
VGKSS +NA+ + +S G+ KH L L+ D PG F
Sbjct: 106 SGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTD 165
Query: 385 SKADMILNGILPIDQMRDH 403
+ + + I +
Sbjct: 166 IEEEELGYTFPDIREKSSS 184
Score = 29.3 bits (65), Expect = 1.1
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 173 DVIVQIVDARNPLLFRCEDLERY-VKEVSPHKRNMILLNKADLLTRKQRCYWTKYF 227
D V + A P F L+R+ V + + +I + K DL+ + + +
Sbjct: 12 DQAVLVFSAVQPS-FSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAY 66
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 36.5 bits (83), Expect = 0.005
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFV 383
+I + G N GK+S + L V T + D +
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDS---VRPTVVSQEPLSAADYDGSGVTLVDFP-GHVKLR 60
Query: 384 FSKADMILNGILPIDQMRDHVPAVNMLCTL 413
+ +D + + + V + L
Sbjct: 61 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 90
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 35.8 bits (81), Expect = 0.008
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPG 355
+ VG + GK+ LL + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT 33
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 34.7 bits (78), Expect = 0.012
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPG---KTKHFQTLFVDDELLLCDCPGLVMPS 381
+ +G N GK++ ++ L N + ++ T + + L +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62
Query: 382 FVFSKADMILNGILPIDQMRDH 403
F + + I+ + D R
Sbjct: 63 DYFPEVNGIVFLVDAADPERFD 84
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 34.6 bits (78), Expect = 0.015
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 8/143 (5%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMP-- 380
+ +VG N GK++ + + V S T G + + + + L+ D G
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-SNVEEIVINNTRFLMWDIGGQESLRS 74
Query: 381 --SFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNR 438
+ ++ + ++ + D+ R V + L + + I + D E
Sbjct: 75 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 134
Query: 439 PPFSEELCNAYGYNRG---FMTS 458
S+ L +
Sbjct: 135 AEISQFLKLTSIKDHQWHIQACC 157
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 33.9 bits (76), Expect = 0.026
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSAT 353
+ + ++G N GK++ + ++S T
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISPT 33
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 33.9 bits (76), Expect = 0.027
Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 4/129 (3%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTL----FVDDELLLCDCPGLV 378
M I ++G GK++ + L + V+ T G T F +L
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 65
Query: 379 MPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNR 438
+ + +I + + + Q E +
Sbjct: 66 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS 125
Query: 439 PPFSEELCN 447
+
Sbjct: 126 EMANSLGLP 134
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.6 bits (76), Expect = 0.029
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 325 IGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDE---LLLCDCPGL--- 377
I L+G VGK+ + AT G +T+ ++ E L + D G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
Query: 378 -VMPSFVFSKADMILNGILPIDQMRDHV 404
+ + A+ ++ +
Sbjct: 68 RSITQSYYRSANALILTYDITCEESFRC 95
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 33.1 bits (74), Expect = 0.044
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 318 MNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVS 351
M+ + +G+ G+ + GK++ L S
Sbjct: 1 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAH 34
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 33.0 bits (74), Expect = 0.053
Identities = 14/124 (11%), Positives = 31/124 (25%), Gaps = 8/124 (6%)
Query: 325 IGLVGYPNVGKSSTINALLNA-----KKVSVSATPGKTKHFQTLFVDDELLL---CDCPG 376
+ + GK++ + L+ A + + D L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTI 64
Query: 377 LVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDP 436
+ + L + + + + LV E I I++ + G P
Sbjct: 65 VASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRP 124
Query: 437 NRPP 440
Sbjct: 125 EELV 128
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 32.3 bits (72), Expect = 0.080
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 3/111 (2%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSF 382
M I +VG GK++ + L + V+ T + + + D G
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI-GFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 383 VFSKADMILNGILPI--DQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPD 431
++ G++ + R+ V + +++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.4 bits (73), Expect = 0.084
Identities = 27/138 (19%), Positives = 42/138 (30%), Gaps = 9/138 (6%)
Query: 322 VMTIGLVGYPNVGKSSTINALLNAK-KVSVSATPG---KTKHFQTLFVDDELLLCDCPGL 377
+M I L+G VGKS + + K S T G K K +L + D G
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 378 ----VMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEG 433
+ + + A I+ + I R T+ E ++ + D
Sbjct: 62 ERFRTITTAYYRGAMGIIL-VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 120
Query: 434 EDPNRPPFSEELCNAYGY 451
E L G
Sbjct: 121 TRVVTADQGEALAKELGI 138
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 32.2 bits (72), Expect = 0.092
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 10/140 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD----ELLLCDCPGL--- 377
++G GKS ++ + K S + + +L + D G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 378 -VMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDP 436
+ + A L ++ R+ A+ T +NI I+ + +
Sbjct: 68 RSVTRSYYRGAAGAL--LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125
Query: 437 NRPPFSEELCNAYGYNRGFM 456
F E A F+
Sbjct: 126 REVTFLEASRFAQENELMFL 145
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 32.1 bits (72), Expect = 0.099
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 321 DVMT---IGLVGYPNVGKSSTINALLNAKKVSVSATP----GKTKHFQTLFVDDELLLCD 373
DV+T I ++G VGKSS + + A K K +L + D
Sbjct: 3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 62
Query: 374 CPG 376
G
Sbjct: 63 TAG 65
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.5 bits (70), Expect = 0.14
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 3/122 (2%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLC-DCPGLVMPSFV 383
+G++G GKSS I+ L + T + + L L+ +
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKF 67
Query: 384 FSKADMIL--NGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRPPF 441
AD ++ + + + L +L ++ TQ R
Sbjct: 68 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG 127
Query: 442 SE 443
Sbjct: 128 DA 129
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.9 bits (71), Expect = 0.17
Identities = 10/169 (5%), Positives = 44/169 (26%), Gaps = 6/169 (3%)
Query: 176 VQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTKYFNSVNVAVA 235
+ + + + + + ++ + + + L +
Sbjct: 33 TREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFD 92
Query: 236 FFSATNIYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQKVLENDLKIKSSP 295
+ T + + + ++ E + E + +V +
Sbjct: 93 ATNTTRERRAM------IFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRD 146
Query: 296 KLLNREELISLFKSFHDVNIPRMNPDVMTIGLVGYPNVGKSSTINALLN 344
E+ + + + + + + +VG+S +N + +
Sbjct: 147 SDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVAD 195
Score = 28.4 bits (62), Expect = 2.2
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 325 IGLVGYPNVGKSSTINAL---LNAKKVSV 350
I +VG P GK+ L LN V
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPT 33
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.8 bits (68), Expect = 0.29
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAK 346
M + LVG GK++ +N + + +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQ 26
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.9 bits (70), Expect = 0.29
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 267 SEW-EDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDV--NIPRMNPDVM 323
S+W + +E + + L+ + E I+ + P+ N
Sbjct: 6 SQWIRFRCSKIDEGGDWRPIVQFLR-------YQQIEFITFLGALKSFLKGTPKKN---- 54
Query: 324 TIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHF 360
+ G N GKS + ++ + +V + T HF
Sbjct: 55 CLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHF 91
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 31.3 bits (70), Expect = 0.30
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 301 EELISLFKSFHDV--NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATP 354
++LI + DV + D+ I +VG + GKSS + ++ + +
Sbjct: 1 DQLIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI 56
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.8 bits (68), Expect = 0.34
Identities = 5/28 (17%), Positives = 16/28 (57%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSA 352
+ ++G+ + GK++ ++ + + S A
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREA 35
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.7 bits (68), Expect = 0.34
Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 6/142 (4%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPG---KTKHFQTLFVDDELLLCDCPGLVM 379
+ I L+G N GK++ + L + ++ T G K+ Q ++ +
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 76
Query: 380 PSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRP 439
F D+++ I D+ R + L + I + D
Sbjct: 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 136
Query: 440 PFSEELCNAYGYNRG---FMTS 458
+E L +R S
Sbjct: 137 EIAEGLNLHTIRDRVWQIQSCS 158
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId:
1422]}
Length = 57
Score = 28.1 bits (63), Expect = 0.39
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 414 VPRHVLENIYGIMITQPDEGEDPNRPPFSEELCNAYG 450
V R + E I + + + R P E+ + G
Sbjct: 6 VSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLG 42
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 30.2 bits (67), Expect = 0.40
Identities = 16/135 (11%), Positives = 36/135 (26%), Gaps = 8/135 (5%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVS----ATPGKTKHFQTLFVDDELLLCDCPGL--- 377
I ++G +VGK+S + + K K +L + D G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
Query: 378 -VMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDP 436
+ + + A + ++ + + + E E
Sbjct: 68 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV 127
Query: 437 NRPPFSEELCNAYGY 451
+L + G+
Sbjct: 128 VSSERGRQLADHLGF 142
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 30.7 bits (68), Expect = 0.43
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKK-----VSVSATPGKTKHFQTLFVDDELL 370
M + VG GK++ + V+ G + +D
Sbjct: 1 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREF 53
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 29.6 bits (66), Expect = 0.44
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSF 382
MT+ ++G N+GK + L N +K+ + +D+ + D +V +
Sbjct: 3 MTVLIIGMGNIGKK--LVELGNFEKIYAY-DRISKDIPGVVRLDEFQVPSDVSTVVECAS 59
Query: 383 VFSKADMILNGI 394
+ + L +
Sbjct: 60 PEAVKEYSLQIL 71
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 30.2 bits (67), Expect = 0.61
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 10/53 (18%)
Query: 303 LISLFKSFHDVN----------IPRMNPDVMTIGLVGYPNVGKSSTINALLNA 345
++L +S H + I + + +G+ G P GKS+ + A
Sbjct: 25 AMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 77
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.65
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDD-----ELLLCDCPG 376
+ LVG VGK+ + + ++ + F+ +D +L + D G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.7 bits (65), Expect = 0.69
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 321 DVMTIGLVGYPNVGKSSTINALLNAK 346
+++ + ++G VGK+S ++ +N K
Sbjct: 1 NILKVIILGDSGVGKTSLMHRYVNDK 26
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.8 bits (66), Expect = 0.70
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDDE---LLLCDCPGL--- 377
+ L+G VGKS + + +T G +T+ +D + L + D G
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 68
Query: 378 -VMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDP 436
+ S + + I+ I+ ++ V M + R+ + +++ + +D
Sbjct: 69 RTITSSYYRGSHGII--IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126
Query: 437 NRPPFSEELCNAYGYNRGFM 456
+ A F+
Sbjct: 127 RVVEYDVAKEFADANKMPFL 146
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.5 bits (65), Expect = 0.70
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDE---LLLCDCPG 376
+ L+G VGKS+ ++ + + +T G +++ VD + + D G
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 62
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 29.7 bits (65), Expect = 0.72
Identities = 19/151 (12%), Positives = 46/151 (30%), Gaps = 2/151 (1%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSF 382
+ +G N GK++ ++ L + + T T T+ +
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73
Query: 383 VFSKADMILNGILPIDQMRDHVPAVNM--LCTLVPRHVLENIYGIMITQPDEGEDPNRPP 440
+ I + +D + L +L+ + N+ +++ + +
Sbjct: 74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE 133
Query: 441 FSEELCNAYGYNRGFMTSNGQPDNPRSARYI 471
E+ YG G + + + N R
Sbjct: 134 RLREMFGLYGQTTGKGSVSLKELNARPLEVF 164
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 29.8 bits (66), Expect = 0.77
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 17/64 (26%)
Query: 301 EELISLFKSFHD----------VNIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSV 350
E+LI L D +++P+ I +VG + GKSS + + +
Sbjct: 2 EDLIPLVNRLQDAFSAIGQNADLDLPQ-------IAVVGGQSAGKSSVLENFVGRDFLPR 54
Query: 351 SATP 354
+
Sbjct: 55 GSGI 58
>d1skva_ a.30.5.1 (A:) Hypothetical protein D-63 {Sulfolobus
virus-like particle SSV1 [TaxId: 244589]}
Length = 64
Score = 27.6 bits (61), Expect = 0.78
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 94 EKELALQAHKEKRELLKIPRRPKWDKNTTAEQLQAMERDEFLQWRRELNLLQ 145
EKEL ++ RELL + K D+ T Q + + F + E L Q
Sbjct: 6 EKELFEMLDEDVRELLSLIHEIKIDRITGNMDKQKLGKAYFQVQKIEAELYQ 57
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.3 bits (64), Expect = 0.90
Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 6/140 (4%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKV----SVSATPGKTKHFQTLFVDDELLLCDCPGLVMP 380
+ +VG VGKSS I + Q D L+L D G
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 64
Query: 381 SFVFSKADMILNGILPIDQMRDHVPAVNMLCTL-VPRHVLENIYGIMITQPDEGEDPNRP 439
+ + + D + + +I ++ + D +
Sbjct: 65 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCI 124
Query: 440 PFSEELCNAYGYNRGFM-TS 458
E A F TS
Sbjct: 125 KNEEAEGLAKRLKLRFYRTS 144
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.3 bits (64), Expect = 0.95
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 6/140 (4%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSFVF 384
+ L+G P VGKS+ + + G T + +E L +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW 63
Query: 385 SKADMILNG-----ILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRP 439
+ G + + A + L +++ I++ +
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123
Query: 440 PFSEELCNAYGYNRGFM-TS 458
E A ++ F+ TS
Sbjct: 124 SVDEGRACAVVFDCKFIETS 143
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase
{Leishmania major [TaxId: 5664]}
Length = 139
Score = 28.6 bits (63), Expect = 1.0
Identities = 8/50 (16%), Positives = 13/50 (26%)
Query: 176 VQIVDARNPLLFRCEDLERYVKEVSPHKRNMILLNKADLLTRKQRCYWTK 225
I DAR+ F ++ H L L + +
Sbjct: 13 AIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLR 62
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 28.9 bits (63), Expect = 1.2
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 10/142 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKV-SVSATPGKTKHFQTLFVDDELLLCDCPGL------ 377
+ ++G VGK+S +N +N K AT G + + VDD L+
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64
Query: 378 -VMPSFVFSKADMILNG--ILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGE 434
+ + AD + + + + + EN +++ + E
Sbjct: 65 QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 124
Query: 435 DPNRPPFSEELCNAYGYNRGFM 456
+ + N +
Sbjct: 125 NRQVATKRAQAWCYSKNNIPYF 146
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.8 bits (63), Expect = 1.4
Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 4/108 (3%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSF 382
+ I ++G GK++ + L + V+ T G + + +L + D G
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIG-FNVETLSYKNLKLNVWDLGGQTSIRP 76
Query: 383 VFS---KADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMI 427
+ + ++ A L ++ L++ ++
Sbjct: 77 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 124
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 28.8 bits (64), Expect = 1.5
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 8/87 (9%)
Query: 118 DKNTTAEQLQAMERDEFLQWRRELN------LLQEEDGLVITPYEKNLDFWRQLWRVIER 171
D T + M+ ++ L L E + + + + + R
Sbjct: 78 DVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTR 137
Query: 172 SDVIVQIVDARNPLLFRCEDLERYVKE 198
V+IV + +D+ +
Sbjct: 138 LGSGVKIVA--DEWCNTYQDIVDFTDA 162
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 28.7 bits (63), Expect = 2.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 315 IPRMNPDVMTIGLVGYPNVGKSSTINAL 342
+ + +G+ G P VGKS+TI+AL
Sbjct: 44 VLPQTGRAIRVGITGVPGVGKSTTIDAL 71
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.9 bits (61), Expect = 2.6
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 325 IGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDE 368
+ +G VGK++ + + K T G + + + +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 52
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.7 bits (60), Expect = 3.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 319 NPDVMTIGLVGYPNVGKSSTINALLN 344
+P + +VG VGK+ + +
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTT 27
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 3.3
Identities = 12/106 (11%), Positives = 27/106 (25%), Gaps = 5/106 (4%)
Query: 314 NIPRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCD 373
+ ++P+ + VG+P GKS+ I L + + + L
Sbjct: 6 SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQG 65
Query: 374 CPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVL 419
++ + + I +D
Sbjct: 66 KRVVIDNTNPDVPSRARY-----IQCAKDAGVPCRCFNFCATIEQA 106
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 27.9 bits (61), Expect = 3.7
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 242 IYDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDDGQ 282
+ + E + EV+ E+DE E E EE
Sbjct: 186 VPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEA 226
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.3 bits (59), Expect = 3.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 323 MTIGLVGYPNVGKSSTINALLN 344
M I + G P VGK++ + ++
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVE 22
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 26.7 bits (59), Expect = 3.8
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 91 SKEEKELALQA----HKEKRELLKIPRRPK-WDKNTTAE---------QLQAMERDEFLQ 136
SKE AL+A ++++ L IP+ P+ W + + L+ ++ +F
Sbjct: 13 SKEMMSQALKATFSGFTKEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCM 72
Query: 137 WRRELNLLQEEDGLVITPYEKNLDFWRQL 165
L L +E L + P W L
Sbjct: 73 SGAALCALGKECFLELAPDFVGDILWEHL 101
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 4.1
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDC 374
+ +VG VGKS+ + + VS + + + VD D
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDI 58
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.2 bits (59), Expect = 4.5
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 11/141 (7%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVS-ATPGKTKHFQTLFVDDELLLCDCPGLV------- 378
++G VGKS + + + V T G + + +D + +
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 379 MPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNR 438
+ + A L ++ R+ + +H N+ ++I + E
Sbjct: 68 ITRSYYRGAAGAL--LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRD 125
Query: 439 PPFSEELCNAYGYNRGFM-TS 458
E A + FM TS
Sbjct: 126 VKREEGEAFAREHGLIFMETS 146
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.2 bits (59), Expect = 4.7
Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 7/141 (4%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELL---LCDCPGLVMPS 381
+ ++G VGKS+ + + + + + + VD + D G +
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 382 FVFSKADMILNGILPIDQMRDHVPAVNMLCT---LVPRHVLENIYGIMITQPDEGEDPNR 438
+ G + + + + ++ ++ E + I++ + E
Sbjct: 66 SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE 125
Query: 439 PPFSEELCNAYGYNRGFM-TS 458
SE A + FM TS
Sbjct: 126 VSSSEGRALAEEWGCPFMETS 146
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.4 bits (60), Expect = 4.7
Identities = 22/173 (12%), Positives = 46/173 (26%), Gaps = 24/173 (13%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSATPG--------KTKHFQTLFVDDELLLCD----- 373
L+G GKS+ + + + + V T G +F V +
Sbjct: 11 LLGAGESGKSTIVKQM---RILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 67
Query: 374 CPGLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLEN----IYGIMITQ 429
+ FV + + + R A+N+ ++ L ++
Sbjct: 68 FNDVTAIIFVVASSSYNMVIREDNQTNRLQ-EALNLFKSIWNNRWLRTISVILFLNKQDL 126
Query: 430 PDEGEDPNRPPFSE---ELCNAYGYNRGFMTSNGQPDNPRSARYILKDFVNGH 479
E + + E P R+ +I +F+
Sbjct: 127 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIS 179
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.0 bits (58), Expect = 5.3
Identities = 10/51 (19%), Positives = 20/51 (39%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCP 375
I ++GY +VGKSS + + V + + + V+ +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLV 57
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.9 bits (58), Expect = 5.7
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 6/140 (4%)
Query: 325 IGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDE---LLLCDCPGLVMPS 381
+ + G VGKS+ + L + + ++ + +DDE + + D G
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI 64
Query: 382 FVFSKADMILNGILPIDQMR--DHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPNRP 439
+L D + + L +N+ I++ + + +
Sbjct: 65 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV 124
Query: 440 PFSEELCNAYGYNRGFM-TS 458
E A F S
Sbjct: 125 STEEGEKLATELACAFYECS 144
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.8 bits (58), Expect = 6.2
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 11/145 (7%)
Query: 325 IGLVGYPNVGKSSTINALLNAK-KVSVSATPGKTKHFQTLFVDDE---LLLCDCPGLVMP 380
+ L+G VGKSS +N + K + T G + L VD + + D G
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 381 SFVFSKADMILNGIL---PIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDPN 437
+ + + L +D + N + ++ D +
Sbjct: 69 RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 128
Query: 438 RPPFS----EELCNAYGYNRGFMTS 458
S + C G F TS
Sbjct: 129 ERQVSTEEAQAWCRDNGDYPYFETS 153
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 26.8 bits (58), Expect = 6.5
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 316 PRMNPDVMTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCD 373
P++ P+V IG+VG+ + GK++ + A+ S + + + + + +C+
Sbjct: 3 PKVQPEV-NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCE 59
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (57), Expect = 6.6
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 327 LVGYPNVGKSSTINALLNAKKVSVSAT-PGKTKHFQTLFVDDELLLCDC 374
++G VGKS ++ K ++ G + + V + +
Sbjct: 9 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 57
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.5 bits (57), Expect = 7.2
Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 10/162 (6%)
Query: 323 MTIGLVGYPNVGKSSTINALLNAKKVSVSATPGKTKHFQTLFVDDELLLCDCPGLVMPSF 382
+ + L+G GKS+ + + K + + T HF + + + D G
Sbjct: 3 VKLLLLGAGESGKSTIVKQM---KIIHEAGTGIVETHFTFKDLHFK--MFDVGGQRSERK 57
Query: 383 VFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGEDP-----N 437
+ + I+ + D+ + + H ++ + + N
Sbjct: 58 KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN 117
Query: 438 RPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDFVNGH 479
+ EE + G +A YI F + +
Sbjct: 118 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLN 159
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.9 bits (59), Expect = 7.7
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 8/90 (8%)
Query: 261 ESESDESEWEDISEEEEEDDGQKVLENDLKIKSSPKLLNREELISLFKSFHDVNIPRMNP 320
D + S + + L L + ++ F NIP+
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCL----LPKMDSVVYDFLKCMVYNIPKKR- 155
Query: 321 DVMTIGLVGYPNVGKSSTINALLNAKKVSV 350
G + GK++ ALL
Sbjct: 156 ---YWLFKGPIDSGKTTLAAALLELCGGKA 182
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.0 bits (57), Expect = 8.7
Identities = 9/38 (23%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 243 YDDIPEGDEELEDEVVSEESESDESEWEDISEEEEEDD 280
Y ++PE ++ + + DE +++DI +++E+ D
Sbjct: 105 YGELPE-HAKINETDTFGPGDDDEIQFDDIGDDDEDID 141
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.5 bits (57), Expect = 8.7
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 325 IGLVGYPNVGKSSTINAL---LNAKKVSVSATPGKTKHF 360
+ + G P VG +++ L + V+ + F
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF 42
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.1 bits (56), Expect = 9.4
Identities = 25/165 (15%), Positives = 45/165 (27%), Gaps = 16/165 (9%)
Query: 325 IGLVGYPNVGKSSTINALL----NAKKVSVSAT-----PGKTKHFQTLFVDDELLLCDCP 375
+ L G GKS+ + L + SVS T PG+ FV E++ D
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIA 62
Query: 376 GLVMPSFVFSKADMILNGILPIDQMRDHVPAVNMLCTLVPRHVLENIYGIMITQPDEGED 435
++ + ++ + L ++ I
Sbjct: 63 AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPI-------Y 115
Query: 436 PNRPPFSEELCNAYGYNRGFMTSNGQPDNPRSARYILKDFVNGHL 480
P S ++ R T +AR ++ L
Sbjct: 116 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGL 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.391
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,240,323
Number of extensions: 109629
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 106
Length of query: 595
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 505
Effective length of database: 1,171,896
Effective search space: 591807480
Effective search space used: 591807480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.3 bits)