BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9997
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/83 (97%), Positives = 81/83 (97%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGD AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/55 (98%), Positives = 54/55 (98%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGD AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 56 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 116 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 175
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 176 AALEPPEPKKSRRCVLL 192
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/84 (97%), Positives = 83/84 (98%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA
Sbjct: 1 SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFG 143
GQEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 GQEDYDRLRPLSYPQTDVFLVCFS 84
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 2 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 56
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 231 bits (589), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 118 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 177
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 178 AALEPPEPKKSRRCVLL 194
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 4 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 63
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFS 86
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 4 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 58
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 113/137 (82%), Positives = 119/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 175 AALEPPEPKKSRRCVLL 191
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/136 (82%), Positives = 118/136 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCVL 329
R+CVL
Sbjct: 175 AALEPPEPKKSRRCVL 190
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/82 (97%), Positives = 80/82 (97%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV IGGEPYTLGLFDTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 122 EDYDRLRPLSYPQTDVFLVCFG 143
EDYDRLRPLSYPQTDVFLVCF
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFS 83
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/54 (98%), Positives = 53/54 (98%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV IGGEPYTLGL
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGL 55
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/137 (81%), Positives = 118/137 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAG EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 59 LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 178
Query: 314 XXXXXXXXXXXRKCVLL 330
R+CVLL
Sbjct: 179 AALEPPEPKKSRRCVLL 195
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/86 (94%), Positives = 82/86 (95%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 117
A +QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD
Sbjct: 2 AMGIQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 61
Query: 118 TAGQEDYDRLRPLSYPQTDVFLVCFG 143
TAG EDYDRLRPLSYPQTDVFLVCF
Sbjct: 62 TAGLEDYDRLRPLSYPQTDVFLVCFS 87
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/135 (82%), Positives = 117/135 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 174
Query: 314 XXXXXXXXXXXRKCV 328
R+CV
Sbjct: 175 AALEPPEPKKSRRCV 189
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/134 (82%), Positives = 116/134 (86%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 176
Query: 314 XXXXXXXXXXXRKC 327
R+C
Sbjct: 177 AALEPPEPKKSRRC 190
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 62
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFS 85
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 57
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 83/90 (92%)
Query: 54 GLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 113
G MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL
Sbjct: 1 GSKIISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 60
Query: 114 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143
GLFDTAGQEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 90
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 8 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 62
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/89 (92%), Positives = 84/89 (94%)
Query: 54 GLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 113
G + + MQTIKCVVVGDGAVGK CLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL
Sbjct: 1 GSSGSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 60
Query: 114 GLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
GLFDTAGQEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 GLFDTAGQEDYDRLRPLSYPQTDVFLVCF 89
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/55 (98%), Positives = 54/55 (98%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGK CLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 8 MQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 62
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/83 (97%), Positives = 81/83 (97%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNK PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/55 (98%), Positives = 54/55 (98%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNK PSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 65 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 124
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 125 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 11 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 70
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 71 QEDYDRLRPLSYPQTDVFLVCFS 93
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 11 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 65
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/83 (97%), Positives = 81/83 (97%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP VFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/55 (98%), Positives = 54/55 (98%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP VFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGL 55
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/84 (97%), Positives = 83/84 (98%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA
Sbjct: 2 SMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 61
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFG 143
GQEDYDRLRPLSYPQTDVFLVCF
Sbjct: 62 GQEDYDRLRPLSYPQTDVFLVCFS 85
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 57
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 59 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/82 (98%), Positives = 81/82 (98%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 122 EDYDRLRPLSYPQTDVFLVCFG 143
EDYDRLRPLSYPQTDVFLVCF
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFS 87
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/54 (100%), Positives = 54/54 (100%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 59
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 108/119 (90%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 118 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 4 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 63
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFS 86
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 4 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 58
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 223 bits (569), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 107/119 (89%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQ+GLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/83 (98%), Positives = 82/83 (98%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/119 (89%), Positives = 113/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQ+GLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/82 (98%), Positives = 81/82 (98%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 122 EDYDRLRPLSYPQTDVFLVCFG 143
EDYDRLRPLSYPQTDVFLVCF
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFS 83
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/54 (100%), Positives = 54/54 (100%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/119 (89%), Positives = 112/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
LFDTAG EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/83 (97%), Positives = 81/83 (97%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
EDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 LEDYDRLRPLSYPQTDVFLVCFS 83
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 107/119 (89%), Positives = 112/119 (94%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC KTPFLLVG
Sbjct: 55 LRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQIDLR+D T+EKLAKNKQKPI+ E EKLA++LKAVKYVECSALTQKGLKNVFDEAI
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/83 (97%), Positives = 81/83 (97%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QEDYDRLRPLSYPQTDVFLVCF
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFS 83
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/56 (98%), Positives = 55/56 (98%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLN 56
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLR 56
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 89/138 (64%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 174
Query: 314 XXX-XXXXXXXXRKCVLL 330
RKC+LL
Sbjct: 175 AVLCPPPVKKRKRKCLLL 192
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 99/153 (64%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
QEDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVGT 115
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 116 KLDL-------RDDKDTIEKLKEKKLTPITYPQ 141
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 74 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 133
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 134 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 104/157 (66%), Gaps = 12/157 (7%)
Query: 57 FARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 116
F TMQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+
Sbjct: 16 FQGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 75
Query: 117 DTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLH 176
DTAGQEDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P +
Sbjct: 76 DTAGQEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPII 130
Query: 177 TLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
+G T ++ +RD DT + +L P++YPQ
Sbjct: 131 LVG--TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 160
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 20 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 74
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 62 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 101/160 (63%), Gaps = 12/160 (7%)
Query: 54 GLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 113
G + + MQ IKCVVVGDGAVGK CLLISYTTN FP EY+PTVFDNY+ VM+ G+P L
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 60
Query: 114 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
GL+DTAGQEDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P
Sbjct: 61 GLWDTAGQEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNT 115
Query: 174 KLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
+ +G ++ R DT + +L P++YPQ
Sbjct: 116 PIILVGTKLDL-------RDDKDTIEKLKEKKLTPITYPQ 148
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGK CLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 8 MQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 62
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 102/120 (85%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQ
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 89 EDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG-- 141
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 142 TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 168
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 65 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 124
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 125 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 100/152 (65%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN F EY+PTVFDNY+ VM+ G+P LGL+DTAGQ
Sbjct: 12 QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 72 EDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG-- 124
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 125 TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 151
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN F EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 12 QAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGL 65
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 102/153 (66%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
QEDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG- 114
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 115 -TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 141
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 102/120 (85%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 100/152 (65%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN P EY+PTVFDNY+ VM+ G+P LGL+DTAGQ
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 89 EDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG-- 141
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 142 TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 168
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 45/54 (83%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN P EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGL 82
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 102/153 (66%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
QEDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG- 114
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 115 -TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 141
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 102/153 (66%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
QEDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG- 114
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 115 -TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 141
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 98/152 (64%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 116
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 117 LDL-------RDDKDTIEKLKEKKLTPITYPQ 141
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 99/153 (64%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
QEDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVGT 115
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 116 KLDL-------RDDKDTIEKLKEKKLTPITYPQ 141
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHC TP +LVG
Sbjct: 62 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG LAKE+ +VKY+ECSALTQ+GLK VFDEAI
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 101/154 (65%), Gaps = 12/154 (7%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+MQ IKCVVVGD AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTA
Sbjct: 7 SMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 66
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
GQEDYDRLRPLSYPQTDVFL+CF ++ + WF + H P + +G
Sbjct: 67 GQEDYDRLRPLSYPQTDVFLICF----SLVSPASYENVRAKWFPEVR-HHCPSTPIILVG 121
Query: 180 FITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 122 --TKLD---LRDDK--DTIEKLKEKKLAPITYPQ 148
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 45/55 (81%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGD AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL
Sbjct: 8 MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGL 62
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHC TP +LVG
Sbjct: 61 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVG 120
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG LAKE+ +VKY+ECSALTQ+GLK VFDEAI
Sbjct: 121 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 96/152 (63%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGD AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAGQ
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ + WF + H P + +G
Sbjct: 68 EDYDRLRPLSYPQTDVFLICF----SLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTK 122
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 123 LDL-------RDDKDTIEKLKEKKLAPITYPQ 147
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 44/54 (81%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGD AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGL 61
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 102/119 (85%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+S+ENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG LAKE+ +VKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 98/153 (64%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
QEDYDRLRPLSYPQTDVFL+CF ++ + WF + H P + +G
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICF----SLVSPASYENVRAKWFPEVR-HHCPSTPIILVGT 115
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 116 KLDL-------RDDKDTIEKLKEKKLAPITYPQ 141
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ +P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGL 55
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 174
Query: 314 XXX-XXXXXXXXRKCVLL 330
RKC+LL
Sbjct: 175 AVLCPPPVKKRKRKCLLL 192
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 101/153 (66%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG- 114
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 115 -TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 141
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 174
Query: 314 XXX-XXXXXXXXRKCVLL 330
RKC+LL
Sbjct: 175 AVLCPPPVKKRKRKCLLL 192
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 100/152 (65%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG-- 114
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 115 TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 141
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDV L+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIX 313
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 174
Query: 314 XXX-XXXXXXXXRKCVLL 330
RKC+LL
Sbjct: 175 AVLCPPPVKKRKRKCLLL 192
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 97/152 (63%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDV L+CF ++ + W+ + H P + +G
Sbjct: 62 EDYDRLRPLSYPQTDVSLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 116
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 117 LDL-------RDDKDTIEKLKEKKLTPITYPQ 141
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 101/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP LLVG
Sbjct: 56 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+E+L K PI++ QG +A+E+ +VKY+ECSALTQ+GLK VFDEAI
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 99/159 (62%), Gaps = 22/159 (13%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTA
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF-----GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMK 174
GQEDYDRLRPLSYPQTDVFL+CF + N+R W+ H P
Sbjct: 61 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK-----------WYPEVRHHCP-- 107
Query: 175 LHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
HT + D+ DT + +L P++YPQ
Sbjct: 108 -HTPILLVGTKLDLRDDK---DTIERLRDKKLAPITYPQ 142
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 56
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 101/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP LLVG
Sbjct: 56 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+E+L K PI++ QG +A+E+ +VKY+ECSALTQ+GLK VFDEAI
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 99/159 (62%), Gaps = 22/159 (13%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTA
Sbjct: 1 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF-----GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMK 174
GQEDYDRLRPLSYPQTDVFL+CF + N+R W+ H P
Sbjct: 61 GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK-----------WYPEVRHHCP-- 107
Query: 175 LHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
HT + D+ DT + +L P++YPQ
Sbjct: 108 -HTPILLVGTKLDLRDDK---DTIERLRDKKLAPITYPQ 142
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 56
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 101/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP LLVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+E+L K PI++ QG +A+E+ +VKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 98/158 (62%), Gaps = 22/158 (13%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF-----GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKL 175
QEDYDRLRPLSYPQTDVFL+CF + N+R W+ H P
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK-----------WYPEVRHHCP--- 106
Query: 176 HTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
HT + D+ DT + +L P++YPQ
Sbjct: 107 HTPILLVGTKLDLRDDK---DTIERLRDKKLAPITYPQ 141
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 100/120 (83%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYP TDVFL+CFSVV+P+SF+NVKE+WVPE+ + PFLL+
Sbjct: 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 128
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GTQIDLR+D TL +L K+KPI EQG+KLAKE+ A YVECSALTQKGLK VFDEAI
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL+DTAGQED
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YDRLRPLSYP TDVFL+CF
Sbjct: 79 YDRLRPLSYPMTDVFLICF 97
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 45/52 (86%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 70
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 101/120 (84%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 81 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 100/152 (65%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 89 EDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG-- 141
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 142 TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 168
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 101/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 58 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 118 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 101/153 (66%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 4 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 63
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
EDYDRLRPLSYPQTDVFL+CF ++ + W+ + H P + +G
Sbjct: 64 LEDYDRLRPLSYPQTDVFLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVG- 117
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
T ++ +RD DT + +L P++YPQ
Sbjct: 118 -TKLD---LRDDK--DTIEKLKEKKLTPITYPQ 144
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 4 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 58
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 101/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDV L+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 114
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 98/153 (64%), Gaps = 12/153 (7%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGF 180
QEDYDRLRPLSYPQTDV L+CF ++ + W+ + H P + +G
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVGT 115
Query: 181 ITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 116 KLDL-------RDDKDTIEKLKEKKLTPITYPQ 141
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 55
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 101/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDV L+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 59 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 119 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 100/156 (64%), Gaps = 12/156 (7%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 117
++ MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+D
Sbjct: 2 SKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 61
Query: 118 TAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHT 177
TAGQEDYDRLRPLSYPQTDV L+CF ++ + W+ + H P +
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIIL 116
Query: 178 LGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
+G ++ R DT + +L P++YPQ
Sbjct: 117 VGTKLDL-------RDDKDTIEKLKEKKLTPITYPQ 145
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 5 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 59
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/119 (69%), Positives = 101/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDYDRLRPLSYPQTDV L+CFS+VSP+SFENV+ KW PE+ HHC TP +LVG
Sbjct: 57 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 97/152 (63%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDV L+CF ++ + W+ + H P + +G
Sbjct: 64 EDYDRLRPLSYPQTDVSLICF----SLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 118
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 119 LDL-------RDDKDTIEKLKEKKLTPITYPQ 143
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/54 (77%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 57
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 100/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SF +V+ KW PE+ HHC TP +LVG
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ ++ W+ + H P + +G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICF----SLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTK 268
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 269 LDL-------RDDKDTIEKLKEKKLTPITYPQ 293
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 100/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SF +V+ KW PE+ HHC TP +LVG
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ ++ W+ + H P + +G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICF----SLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTK 268
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 269 LDL-------RDDKDTIEKLKEKKLTPITYPQ 293
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 100/119 (84%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SF +V+ KW PE+ HHC TP +LVG
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 12/152 (7%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAG
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
EDYDRLRPLSYPQTDVFL+CF ++ ++ W+ + H P + +G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICF----SLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTK 268
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
++ R DT + +L P++YPQ
Sbjct: 269 LDL-------RDDKDTIEKLKEKKLTPITYPQ 293
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/54 (75%), Positives = 46/54 (85%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/138 (60%), Positives = 102/138 (73%), Gaps = 19/138 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQT-------------------DVFLVCFSVVSPSSFENVKE 234
L+DTAGQEDYDRLRPLSYPQT DVFL+CFS+VSP+SFENV+
Sbjct: 57 LWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRA 116
Query: 235 KWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294
KW PE+ HHC TP +LVGT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+
Sbjct: 117 KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 176
Query: 295 ECSALTQKGLKNVFDEAI 312
ECSALTQ+GLK VFDEAI
Sbjct: 177 ECSALTQRGLKTVFDEAI 194
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 100/173 (57%), Gaps = 31/173 (17%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTA
Sbjct: 2 SMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 120 GQEDYDRLRPLSYPQT-------------------DVFLVCFGNMMNIRRSVDWNRKLGG 160
GQEDYDRLRPLSYPQT DVFL+CF ++ +
Sbjct: 62 GQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICF----SLVSPASFENVRAK 117
Query: 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
W+ + H P + +G ++ R DT + +L P++YPQ
Sbjct: 118 WYPEVR-HHCPNTPIILVGTKLDL-------RDDKDTIEKLKEKKLTPITYPQ 162
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 47/55 (85%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
MQ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 3 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 57
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/141 (56%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 172 PMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN 231
P + +++ VR L DTAGQ+++D+LRPL Y TD+FL+CFSVVSPSSF+N
Sbjct: 51 PTAFDNFSAVVSVDGRPVR-LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQN 109
Query: 232 VKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291
V EKWVPEI HC K P +LVGTQ DLRED L +L K K+KP+ E + LA+E+KA
Sbjct: 110 VSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169
Query: 292 KYVECSALTQKGLKNVFDEAI 312
Y+ECSALTQK LK VFD AI
Sbjct: 170 SYIECSALTQKNLKEVFDAAI 190
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 64/80 (80%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+KCV+VGDGAVGKT L++SYTTN +P+EY+PT FDN++ V + G P L L DTAGQ++
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 124 YDRLRPLSYPQTDVFLVCFG 143
+D+LRPL Y TD+FL+CF
Sbjct: 81 FDKLRPLCYTNTDIFLLCFS 100
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+KCV+VGDGAVGKT L++SYTTN +P+EY+PT FDN++ V + G P L L
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQL 72
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 91/138 (65%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR+D T +LAK KQ+P+ E+G +A + A Y+ECSA T++G++ VF+ A
Sbjct: 116 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 175
Query: 313 XXXXXXXXXXXXRKCVLL 330
R C +L
Sbjct: 176 RAGLQVRKNKRRRGCPIL 193
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 60/79 (75%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 125 DRLRPLSYPQTDVFLVCFG 143
DRLRPLSYP TDV L+CF
Sbjct: 67 DRLRPLSYPDTDVILMCFS 85
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELAL 57
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 87/119 (73%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 135
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR+D T +LAK KQ+P+ E+G +A + A Y+ECSA T++G++ VF+ A
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 87 DRLRPLSYPDTDVILMCF 104
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELAL 77
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 89/138 (64%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 175
Query: 313 XXXXXXXXXXXXRKCVLL 330
C++L
Sbjct: 176 RAALQARRGKKKSGCLIL 193
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 67 DRLRPLSYPDTDVILMCF 84
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 57
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 89/138 (64%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 175
Query: 313 XXXXXXXXXXXXRKCVLL 330
C++L
Sbjct: 176 RAALQARRGKKKSGCLVL 193
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 60/78 (76%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 67 DRLRPLSYPDTDVILMCF 84
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 57
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 89/138 (64%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 58 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 117
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 177
Query: 313 XXXXXXXXXXXXRKCVLL 330
C++L
Sbjct: 178 RAALQARRGKKKSGCLVL 195
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 69 DRLRPLSYPDTDVILMCF 86
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 59
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 89/138 (64%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 59 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 118
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 119 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 178
Query: 313 XXXXXXXXXXXXRKCVLL 330
C++L
Sbjct: 179 RAALQARRGKKKSGCLVL 196
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 70 DRLRPLSYPDTDVILMCF 87
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 60
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 58 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 117
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 69 DRLRPLSYPDTDVILMCF 86
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 59
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 57 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 116
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 117 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 68 DRLRPLSYPDTDVILMCF 85
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 58
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 60/78 (76%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 67 DRLRPLSYPDTDVILMCF 84
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 57
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 60 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 120 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 178
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 71 DRLRPLSYPDTDVILMCF 88
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 61
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 58 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 117
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 69 DRLRPLSYPDTDVILMCF 86
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 59
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 54 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 113
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 114 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 60/79 (75%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 125 DRLRPLSYPQTDVFLVCFG 143
DRLRPLSYP TDV L+CF
Sbjct: 65 DRLRPLSYPDTDVILMCFS 83
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 55
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 54 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 113
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 114 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 60/79 (75%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 125 DRLRPLSYPQTDVFLVCFG 143
DRLRPLSYP TDV L+CF
Sbjct: 65 DRLRPLSYPDTDVILMCFS 83
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 55
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 60/79 (75%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 125 DRLRPLSYPQTDVFLVCFG 143
DRLRPLSYP TDV L+CF
Sbjct: 67 DRLRPLSYPDTDVILMCFS 85
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 57
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 57 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 116
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 117 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 60/79 (75%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGD A GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 125 DRLRPLSYPQTDVFLVCFG 143
DRLRPLSYP TDV L+CF
Sbjct: 68 DRLRPLSYPDTDVILMCFS 86
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGD A GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 58
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 86/119 (72%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H P +LV
Sbjct: 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILV 135
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR+D T +LAK KQ+P+ E+G +A + A Y+ECSA T++G++ VF+ A
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 61/78 (78%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 87 DRLRPLSYPDTDVILMCF 104
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELAL 77
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 88/119 (73%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP ++V L+CFS+ P S ENV+EKW+ E+ H CQ P +LV
Sbjct: 61 ALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILV 120
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G ++DLR D T+E+L + Q+P++ ++G+ +A ++ A Y ECSA T G++ VF+ A
Sbjct: 121 GCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAA 179
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 58/78 (74%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + +FP YVPTVF+NY V + G L L+DTAGQEDY
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP ++V L+CF
Sbjct: 72 DRLRPLSYPDSNVVLICF 89
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 33/51 (64%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + +FP YVPTVF+NY V + G L L
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELAL 62
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 84/119 (70%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAG EDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 59 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 118
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ E+G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 119 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 59/78 (75%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L+DTAG EDY
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 125 DRLRPLSYPQTDVFLVCF 142
DRLRPLSYP TDV L+CF
Sbjct: 70 DRLRPLSYPDTDVILMCF 87
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI + ++FP YVPTVF+NY + + G+ L L
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELAL 60
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 85/119 (71%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H C P +LV
Sbjct: 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILV 135
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
+ DLR D +LA+ KQ+P+ + G +A ++A Y+ECSA T++G++ VF+ A
Sbjct: 136 ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%)
Query: 57 FARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 116
+ ++M K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+
Sbjct: 19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALW 78
Query: 117 DTAGQEDYDRLRPLSYPQTDVFLVCFG 143
DTAGQEDYDRLRPLSYP TDV L+CF
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFS 105
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELAL 77
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 83/119 (69%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDR RPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 56 ALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
G + DLR D T +LAK KQ+P+ +G +A + A Y+ECSA T+ G++ VF+ A
Sbjct: 116 GNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 60/79 (75%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGD A GKTCLLI ++ ++FP+ YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 125 DRLRPLSYPQTDVFLVCFG 143
DR RPLSYP TDV L+CF
Sbjct: 67 DRARPLSYPDTDVILMCFS 85
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGD A GKTCLLI ++ ++FP+ YVPTVF+NY + + G+ L L
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELAL 57
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 83/118 (70%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQ+DYDRLRPL YP V L+CF V SP+SF+N+ +W PE+ H C+K P ++VG
Sbjct: 86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVG 145
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
+ DLR+D + KL +N +P+++ +G+++A+ + AV Y+ECSA + VF EA
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
++++K V+VGDG GKT LL+ + FP Y PTVF+ Y V + + G+P L ++DTAG
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAG 91
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
Q+DYDRLRPL YP V L+CF
Sbjct: 92 QDDYDRLRPLFYPDASVLLLCF 113
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
++++K V+VGDG GKT LL+ + FP Y PTVF+ Y V + + G+P L +
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHI 86
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 86/119 (72%), Gaps = 2/119 (1%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDY+RLRPLSY DVFL+ FS++S +S+EN+ +KW+PE+ H+ P +LVG
Sbjct: 58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D L+ I+ QGE+L K + AV+Y+ECS+ TQ+ +K VFD AI
Sbjct: 118 TKLDLRDDKQFLKD--HPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 67/83 (80%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
T + IKCV VGDGAVGKTC+LISYT N FP++YVPTVFDN++ V++ G LGL+DTA
Sbjct: 3 TARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDY+RLRPLSY DVFL+ F
Sbjct: 63 GQEDYNRLRPLSYRGADVFLLAF 85
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 42/52 (80%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
IKCV VGDGAVGKTC+LISYT N FP++YVPTVFDN++ V++ G LGL
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 86/126 (68%), Gaps = 2/126 (1%)
Query: 187 GWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK 246
G + L+DTAGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+
Sbjct: 53 GATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG 112
Query: 247 TPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKN 306
P +LVGT++DLR+D + PI+ QGE+L K + A Y+ECS+ +Q+ +K
Sbjct: 113 VPIVLVGTKLDLRDDKQFF--IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKG 170
Query: 307 VFDEAI 312
VFD AI
Sbjct: 171 VFDAAI 176
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 66/79 (83%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 124 YDRLRPLSYPQTDVFLVCF 142
Y+RLRPLSY DVF++ F
Sbjct: 69 YNRLRPLSYRGADVFILAF 87
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGL 60
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P +LVG
Sbjct: 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
T++DLR+D + PI+ QGE+L K + + Y+ECS+ TQ+ +K VFD AI
Sbjct: 118 TKLDLRDDKQFF--IDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 66/79 (83%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL+DTAGQED
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 124 YDRLRPLSYPQTDVFLVCF 142
Y+RLRPLSY DVF++ F
Sbjct: 67 YNRLRPLSYRGADVFILAF 85
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 43/52 (82%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++ V++ G LGL
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGL 58
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 85/126 (67%), Gaps = 4/126 (3%)
Query: 187 GWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK 246
G + + L+DTAGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+
Sbjct: 54 GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN 113
Query: 247 TPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKN 306
P +LVGT++DLR+D L + I+ QGE+L K++ A Y+ECS+ TQ+ +K
Sbjct: 114 VPIVLVGTKLDLRDDKGYLA----DHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKA 169
Query: 307 VFDEAI 312
VFD AI
Sbjct: 170 VFDTAI 175
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 65/79 (82%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G+ LGL+DTAGQED
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 124 YDRLRPLSYPQTDVFLVCF 142
Y RLRPLSY D+F++ F
Sbjct: 70 YSRLRPLSYRGADIFVLAF 88
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G+ LGL
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGL 61
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 138
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 62 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+
Sbjct: 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 84
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
G YD +RPLSYP +D L+CF +I R + L W I E P K+ +G
Sbjct: 85 GSPYYDNVRPLSYPDSDAVLICF----DISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 139
Query: 180 FITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
+++ R+ T + R P+SY Q
Sbjct: 140 CKSDL-------RTDVSTLVELSNHRQTPVSYDQ 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 2 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 58 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 117
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 62 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+
Sbjct: 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 63
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
G YD +RPLSYP +D L+CF +I R + L W I E P K+ +G
Sbjct: 64 GSPYYDNVRPLSYPDSDAVLICF----DISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 118
Query: 180 FITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
+++ R+ T + R P+SY Q
Sbjct: 119 CKSDL-------RTDVSTLVELSNHRQTPVSYDQ 145
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 2 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 59
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 74 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 133
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 134 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 62 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+
Sbjct: 20 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTS 79
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
G YD +RPLSYP +D L+CF +I R + L W I E P K+ +G
Sbjct: 80 GSPYYDNVRPLSYPDSDAVLICF----DISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVG 134
Query: 180 FITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
+++ R+ T + R P+SY Q
Sbjct: 135 CKSDL-------RTDVSTLVELSNHRQTPVSYDQ 161
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 2 QTIKC--VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q +KC VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 20 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 75/113 (66%), Gaps = 12/113 (10%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L+DTAGQ
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMK 174
E+YDRLRPLSY +DV L+CF +N R S D IST+ P +K
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFA--VNNRTSFD----------NISTKWEPEIK 121
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 78/119 (65%), Gaps = 10/119 (8%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQE+YDRLRPLSY +DV L+CF+V + +SF+N+ KW PEI H+ +LVG
Sbjct: 74 LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVG 133
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
++DLR+D ++ ++G+ L ++L V Y+E S++ + GL VF++++
Sbjct: 134 LKVDLRKDG----------SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 74
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L+DTAGQ
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVD 153
E+YDRLRPLSY +DV L+CF +N R S D
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFA--VNNRTSFD 111
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 78/119 (65%), Gaps = 10/119 (8%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQE+YDRLRPLSY +DV L+CF+V + +SF+N+ KW PEI H+ +LVG
Sbjct: 75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVG 134
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
++DLR+D ++ ++G+ L ++L V Y+E S++ + GL VF++++
Sbjct: 135 LKVDLRKDG----------SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 75
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPL Y +D L+CF + P + ++ +KW EI +C T LL+
Sbjct: 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEA 311
G + DLR D TL +L+ KQ PIS+EQG +AK+L A Y+E SA T +K + ++F A
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGD GKT +L + +P YVPTVF+NY + + L L+DT+G Y
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184
D +RPL Y +D L+CF +I R + L W I ++ P ++ +G T++
Sbjct: 89 DNVRPLCYSDSDAVLLCF----DISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDL 143
Query: 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
R+ T + + + P+SY Q
Sbjct: 144 -------RTDLSTLMELSHQKQAPISYEQ 165
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPL Y +D L+CF + P + ++ +KW EI +C T LL+
Sbjct: 61 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 120
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEA 311
G + DLR D TL +L+ KQ PIS+EQG +AK+L A Y+E SA T +K + ++F A
Sbjct: 121 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 180
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGD GKT +L + +P YVPTVF+NY + + L L+DT+G Y
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184
D +RPL Y +D L+CF +I R + L W I ++ P ++ +G T++
Sbjct: 72 DNVRPLCYSDSDAVLLCF----DISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDL 126
Query: 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
R+ T + + + P+SY Q
Sbjct: 127 -------RTDLSTLMELSHQKQAPISYEQ 148
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPL Y +D L+CF + P + ++ +KW EI +C T LL+
Sbjct: 62 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 121
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEA 311
G + DLR D TL +L+ KQ PIS+EQG +AK+L A Y+E SA T +K + ++F A
Sbjct: 122 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 181
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 12/149 (8%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V+VGD GKT +L + +P YVPTVF+NY + + L L+DT+G Y
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184
D +RPL Y +D L+CF +I R + L W I ++ P ++ +G T++
Sbjct: 73 DNVRPLCYSDSDAVLLCF----DISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTDL 127
Query: 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213
R+ T + + + P+SY Q
Sbjct: 128 -------RTDLSTLMELSHQKQAPISYEQ 149
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 43/83 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QE+Y +R + FL F
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFA 84
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ + +I + P +
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMV 113
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL P+ + + +Q + LA+ + ++E SA T++G+ + F
Sbjct: 114 LVGNKSDL----PS---------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAF 157
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 50
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAGQEDY
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 125 DRLRPLSYPQTDVFLVCFG 143
+R + + FL F
Sbjct: 80 AAIRDNYFRSGEGFLCVFS 98
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPFL 250
+ DTAGQEDY +R + + FL FS+ SF + +E+ + + PFL
Sbjct: 70 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR--VKEDENVPFL 127
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL + ++ +S E+ + A++ V YVE SA T+ + VF
Sbjct: 128 LVGNKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVF 172
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 70
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAGQEDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 125 DRLRPLSYPQTDVFLVCFG 143
+R + + FL F
Sbjct: 68 AAIRDNYFRSGEGFLCVFS 86
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPFL 250
+ DTAGQEDY +R + + FL FS+ SF + +E+ + + PFL
Sbjct: 58 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR--VKEDENVPFL 115
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL + ++ +S E+ + A++ V YVE SA T+ + VF
Sbjct: 116 LVGNKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVF 160
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 58
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 43/83 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QE+Y +R + FL F
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFA 83
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMV 112
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 113 LVGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAGQEDY
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 125 DRLRPLSYPQTDVFLVCFG 143
+R + + FL F
Sbjct: 76 AAIRDNYFRSGEGFLCVFS 94
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPFL 250
+ DTAGQEDY +R + + FL FS+ SF + +E+ + + PFL
Sbjct: 66 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR--VKEDENVPFL 123
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL + ++ +S E+ + A++ V YVE SA T+ + VF
Sbjct: 124 LVGNKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVF 168
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + +
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 66
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 43/83 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QE+Y +R + FL F
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFA 83
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAGQEDY
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + + FL F
Sbjct: 66 AAIRDNYFRSGEGFLCVF 83
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPFL 250
+ DTAGQEDY +R + + FL FS+ SF + +E+ + + PFL
Sbjct: 56 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR--VKEDENVPFL 113
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL + ++ +S E+ + A + V YVE SA T+ + VF
Sbjct: 114 LVGNKSDLED------------KRQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVF 158
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 56
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 42/79 (53%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 125 DRLRPLSYPQTDVFLVCFG 143
+R + FL F
Sbjct: 66 SAMRDQYMRTGEGFLCVFA 84
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ + +I + P +
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMV 113
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL P+ + + +Q + LA+ + ++E SA T++G+ + F
Sbjct: 114 LVGNKCDL----PS---------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAF 157
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 56
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 43/83 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QE+Y +R + FL F
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFA 83
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 49
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 43/83 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCFG 143
QE+Y +R + FL F
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFA 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMV 112
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL + + Q + LA+ + Y+E SA T++G+++ F
Sbjct: 113 LVGNKCDL-------------AGRTVESRQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
M K VVVG VGK+ L I N F EY PT+ D+Y V+I GE
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 49
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAG EDY
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + + FL+ F
Sbjct: 69 AAIRDNYFRSGEGFLLVF 86
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQKTPFLL 251
+ DTAG EDY +R + + FL+ FS+ SF E + + + K P L+
Sbjct: 59 ILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL E +Q P+ E+ A+E V+YVE SA T+ + VF
Sbjct: 119 VGNKSDLEE----------RRQVPV--EEARSKAEEW-GVQYVETSAKTRANVDKVF 162
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + +
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 59
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAG EDY
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + + FL+ F
Sbjct: 65 AAIRDNYFRSGEGFLLVF 82
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQKTPFLL 251
+ DTAG EDY +R + + FL+ FS+ SF E + + + K P L+
Sbjct: 55 ILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLV 114
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL E +Q P+ E+ A+E V+YVE SA T+ + VF
Sbjct: 115 VGNKSDLEE----------RRQVPV--EEARSKAEEW-GVQYVETSAKTRANVDKVF 158
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + +
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 55
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAGQE + L P Y LV + V P SF + WV E+ K + LV
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELHEQASKDIIIALV 114
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G +ID L + ++ ++ E+GEKLA+E K + + E SA T + + +VF
Sbjct: 115 GNKIDX---------LQEGGERKVAREEGEKLAEE-KGLLFFETSAKTGENVNDVF 160
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQ 121
+IK V++G+ AVGK+ +++ + +N F PT+ + V I ++DTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + L P Y LV +
Sbjct: 63 ERFASLAPXYYRNAQAALVVY 83
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+IK V++G+ AVGK+ +++ + +N F PT+
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI 36
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAG EDY
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 125 DRLRPLSYPQTDVFLVCFG 143
+R + + FL F
Sbjct: 68 AAIRDNYFRSGEGFLCVFS 86
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPFL 250
+ DTAG EDY +R + + FL FS+ SF + +E+ + + PFL
Sbjct: 58 ILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR--VKEDENVPFL 115
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL + ++ +S E+ + A++ V YVE SA T+ + VF
Sbjct: 116 LVGNKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVF 160
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDI 58
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 121
+ K V++G+G VGKT L++ Y NKF +++ T+ ++ + IGG+ L ++DTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + L P+ Y ++ ++ +
Sbjct: 66 ERFHALGPIYYRDSNGAILVY 86
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 180 FITN-INPGWVR-DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWV 237
F+T +N G R + +++DTAGQE + L P+ Y ++ ++ + + SF+ VK WV
Sbjct: 43 FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWV 101
Query: 238 PEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296
E+ + +VG +IDL K++ +S ++ E A+ + A K+
Sbjct: 102 KELRKMLGNEICLCIVGNKIDLE------------KERHVSIQEAESYAESVGA-KHYHT 148
Query: 297 SALTQKGLKNVF 308
SA KG++ +F
Sbjct: 149 SAKQNKGIEELF 160
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGL 55
+ K V++G+G VGKT L++ Y NKF +++ T+ ++ + IGG+ L +
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 59
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 121
+ K V++G+G VGKT L++ Y NKF +++ T+ ++ + IGG+ L ++DTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + L P+ Y ++ ++ +
Sbjct: 66 ERFHALGPIYYRDSNGAILVY 86
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 19/137 (13%)
Query: 177 TLG--FITN-INPGWVR-DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
TLG F+T +N G R + +++DTAGQE + L P+ Y ++ ++ + + SF+ V
Sbjct: 38 TLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV 97
Query: 233 KEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291
K WV E+ + +VG +IDL K++ +S ++ E A+ + A
Sbjct: 98 K-NWVKELRKMLGNEICLCIVGNKIDLE------------KERHVSIQEAESYAESVGA- 143
Query: 292 KYVECSALTQKGLKNVF 308
K+ SA KG++ +F
Sbjct: 144 KHYHTSAKQNKGIEELF 160
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGL 55
+ K V++G+G VGKT L++ Y NKF +++ T+ ++ + IGG+ L +
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAI 59
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 121
+ K V++G+G VGKT L++ Y NKF +++ T+ ++ + IGG+ L ++DTAGQ
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + L P+ Y ++ ++ +
Sbjct: 80 ERFHALGPIYYRDSNGAILVY 100
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 180 FITN-INPGWVR-DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWV 237
F+T +N G R + +++DTAGQE + L P+ Y ++ ++ + + SF+ VK WV
Sbjct: 57 FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWV 115
Query: 238 PEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296
E+ + +VG +IDL K++ +S ++ E A+ + A K+
Sbjct: 116 KELRKMLGNEICLCIVGNKIDLE------------KERHVSIQEAESYAESVGA-KHYHT 162
Query: 297 SALTQKGLKNVF 308
SA KG++ +F
Sbjct: 163 SAKQNKGIEELF 174
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGL 55
+ K V++G+G VGKT L++ Y NKF +++ T+ ++ + IGG+ L +
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAI 73
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
+K +++GDG VGK+ L+ Y TNKF S+ T+ F N + V G TL ++DTAG
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEV--DGRFVTLQIWDTAG 65
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161
QE + LR Y D L+ F ++ R+S + LG W
Sbjct: 66 QERFKSLRTPFYRGADCCLLTFS--VDDRQSFE---NLGNW 101
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKT 247
++DTAGQE + LR Y D L+ FSV SFEN+ W E ++ +
Sbjct: 59 QIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHF 117
Query: 248 PFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNV 307
PF+++G ++D +ED + ++ E+ + E Y+E SA +
Sbjct: 118 PFVVLGNKVD-KED------------RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVA 164
Query: 308 FDEAI 312
F+EA+
Sbjct: 165 FEEAV 169
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GDG VGK+ L+ Y TNKF S+ T+
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTI 40
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 19/126 (15%)
Query: 188 WVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-TH 242
++ DR+ L+DTAGQE + L P + V +V + + + +SF+ KW+ ++ T
Sbjct: 45 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTE 103
Query: 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302
+LVG + DL + ++ I+ E+GE+ AKEL +V ++E SA T
Sbjct: 104 RGSDVIIMLVGNKTDLAD------------KRQITIEEGEQRAKEL-SVMFIETSAKTGY 150
Query: 303 GLKNVF 308
+K +F
Sbjct: 151 NVKQLF 156
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L L+DTAGQE
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDW 154
+ L P + V +V + N+ + +++ W
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKW 96
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+ LL+ + N F Y+ T+ ++ + TV I GE L ++DTAGQE
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 124 YDRLRPLSYPQTDVFLVCFG-----NMMNIRR 150
+ + Y T +V + + +N++R
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKR 102
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE + + Y T +V + V S SF NVK +W+ EI +C +LVG
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVG 120
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
+ D P ++K + E K A ++ ++ E SA ++ +F+
Sbjct: 121 N----KNDDP--------ERKVVETEDAYKFAGQM-GIQLFETSAKENVNVEEMFN 163
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK+ LL+ + N F Y+ T+ ++ + TV I GE L +
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT--PFL 250
+ DTAGQE++ +R + FL+ FSV SFE + K+ +I + P +
Sbjct: 56 DILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIY-KFQRQILRVKDRDEFPMI 114
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
L+G + DL + Q+ ++ E+G++LA++LK V Y+E SA + + F E
Sbjct: 115 LIGNKADL------------DHQRQVTQEEGQQLARQLK-VTYMEASAKIRMNVDQAFHE 161
Query: 311 AI 312
+
Sbjct: 162 LV 163
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I + + F ++Y PT+ D+Y +I L + DTAGQE++ +R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 136 DVFLVCFG 143
+ FL+ F
Sbjct: 78 EGFLLVFS 85
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 19/126 (15%)
Query: 188 WVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-TH 242
++ DR+ L+DTAGQE + L P + V +V + + + +SF+ KW+ ++ T
Sbjct: 44 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTE 102
Query: 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302
+LVG + DL + ++ +S E+GE+ AKEL V ++E SA
Sbjct: 103 RGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAGY 149
Query: 303 GLKNVF 308
+K +F
Sbjct: 150 NVKQLF 155
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L L+DTAGQE
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNI 148
+ L P SY + V ++ N+
Sbjct: 63 FRSLIP-SYIRDSTVAVVVYDITNV 86
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 19/126 (15%)
Query: 188 WVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-TH 242
++ DR+ L+DTAGQE + L P + V +V + + + +SF KW+ ++ T
Sbjct: 57 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTE 115
Query: 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302
+LVG + DL + ++ +S E+GE+ AKEL V ++E SA
Sbjct: 116 RGSDVIIMLVGNKTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGY 162
Query: 303 GLKNVF 308
+K +F
Sbjct: 163 NVKQLF 168
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 56 NFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLG 114
+F ++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L
Sbjct: 7 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 66
Query: 115 LFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
L+DTAGQE + L P + V +V +
Sbjct: 67 LWDTAGQERFRSLIPSYIRDSTVAVVVY 94
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L+DTAGQE
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 123 DYDRLRPLSY 132
+ + Y
Sbjct: 68 RFRTITTAYY 77
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
L+DTAGQE + + Y ++ + V +F N+K+ W + H + LLV
Sbjct: 60 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLV 118
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + D+ + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 119 GNKSDM-------------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 160
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 60
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L+DTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE- 63
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 64 --RFRTIT 69
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
L+DTAGQE + + Y ++ + V +F N+K+ W + H + LLV
Sbjct: 56 LWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLV 114
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + D + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 115 GNKSDX-------------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 156
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 56
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L+DTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 123 DYDRLRPLS 131
R R ++
Sbjct: 81 ---RFRTIT 86
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
L+DTAGQE + + Y ++ + V +F N+K+ W + H + LLV
Sbjct: 73 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHANDEAQLLLV 131
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + D+ + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 132 GNKSDM-------------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 173
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + F EY PT+ D+Y V + + L + DTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 121 QEDYDRLRPL 130
E + +R L
Sbjct: 61 TEQFTAMRDL 70
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPF 249
+ DTAG E + +R L F + +S+ + S+F ++++E+ + + P
Sbjct: 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR--VKDTEDVPM 111
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DL + ++ + EQG+ LA++ ++E SA ++ + +F
Sbjct: 112 ILVGNKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI 46
M+ K VV+G G VGK+ L + + F EY PT+ D+Y V +
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEV 46
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 122
K +++GDG VGK+ L+ Y TNKF S+ T+ + + + G T+ ++DTAGQE
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ LR Y +D L+ F
Sbjct: 72 RFRSLRTPFYRGSDCCLLTF 91
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + LR Y +D L+ FSV SF+N+ W E ++ + P
Sbjct: 64 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFP 122
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
F+++G + D++E + +S E+ + K+ Y E SA + F
Sbjct: 123 FVILGNKTDIKE-------------RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
Query: 309 DEAI 312
+EA+
Sbjct: 170 EEAV 173
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GDG VGK+ L+ Y TNKF S+ T+
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTI 44
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R Y +T
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYMRT 92
Query: 136 DVFLVCFGNMMNIRRSVDWN 155
+C + N + D N
Sbjct: 93 GEGFLCVFAINNSKSFADIN 112
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE--NVKEKWVPEITHHCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SF N+ + + + P +L
Sbjct: 73 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRV-KDSDDVPMVL 131
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL PT + + +Q +LAK + ++E SA T++G+++ F
Sbjct: 132 VGNKCDL----PT---------RTVDTKQAHELAKSY-GIPFIETSAKTRQGVEDAF 174
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 67
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L ++DTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 123 DYDRLRPLS 131
R R ++
Sbjct: 64 ---RFRTIT 69
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
++DTAGQE + + Y ++ + + +F N+K+ W + H + LLV
Sbjct: 56 IWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLV 114
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + D+ + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 115 GNKSDM-------------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 156
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L +
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 56
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L + DTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 121 QEDYDRLRPL 130
E + +R L
Sbjct: 61 TEQFTAMRDL 70
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT---PF 249
+ DTAG E + +R L F + +S+ + S+F ++++ + E + T P
Sbjct: 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD--LREQILRVKDTDDVPM 111
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DL + ++ + EQG+ LA++ ++E SA ++ + +F
Sbjct: 112 ILVGNKCDLED------------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCML 53
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
L+DTAGQE + + + + D L+ + V SF N++E WV I +T P +LV
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAAHETVPIMLV 139
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
G + D+R+ A T QK + GEKLA A+ + E SA
Sbjct: 140 GNKADIRDTAAT------EGQKCVPGHFGEKLAMTYGAL-FCETSA 178
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDT 118
+ + K V+ GD AVGK+ L+ N+F T+ ++ + T+++ GE L L+DT
Sbjct: 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDT 84
Query: 119 AGQEDYDRLRPLSYPQTDVFLV-----CFGNMMNIRRSVD 153
AGQE + + + + D L+ C + +NIR VD
Sbjct: 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD 124
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K V+ GD AVGK+ L+ N+F T+ ++ + T+++ GE L L
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQL 81
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTA 119
+ T+K +++G+ VGK+ LL+ +T + F E T+ ++ V T+ + G L ++DTA
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 120 GQEDYDRLRPLSY 132
GQE + L P Y
Sbjct: 73 GQERFRTLTPSYY 85
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-- 250
+++DTAGQE + L P Y ++ + V +F + + W+ E+ +C + +
Sbjct: 67 AIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNX 125
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
LVG +ID + + + +G K A++ + ++E SA T G++ F+E
Sbjct: 126 LVGNKID-------------KENREVDRNEGLKFARKHSXL-FIEASAKTCDGVQCAFEE 171
Query: 311 AI 312
+
Sbjct: 172 LV 173
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
+ T+K +++G+ VGK+ LL+ +T + F E T+ ++ V T+ + G L +
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L ++DTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE- 63
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 64 --RFRTIT 69
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
++DTAGQE + + Y ++ + + +F N+K+ W + H + LLV
Sbjct: 56 IWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHANDEAQLLLV 114
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + D + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 115 GNKSDX-------------ETRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEIF 156
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L +
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 56
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNRCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKSDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 49
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 19/126 (15%)
Query: 188 WVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-TH 242
++ DR+ L+DTAGQE + L P + +V + + + +SF+ KW+ ++ T
Sbjct: 49 YLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTE 107
Query: 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302
+LVG + DL + ++ +S E+GE+ AKEL V ++E SA
Sbjct: 108 RGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAGY 154
Query: 303 GLKNVF 308
+K +F
Sbjct: 155 NVKQLF 160
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L L+DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNI 148
GQE + L P SY + V ++ N+
Sbjct: 64 GQERFRSLIP-SYIRDSAAAVVVYDITNV 91
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 77 EGFLCVFA 84
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ + +I + P +
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMV 113
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL P+ + + +Q + LA+ + ++E SA T++G+ + F
Sbjct: 114 LVGNKSDL----PS---------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAF 157
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 50
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 77 EGFLCVFA 84
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ + +I + P +
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMV 113
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL P+ + + +Q + LA+ + ++E SA T++G+ + F
Sbjct: 114 LVGNKSDL----PS---------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAF 157
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 50
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 83 EGFLCVFA 90
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 62 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 120
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 121 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 163
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 56
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + LR Y +D L+ FSV SF+N+ W E ++ + P
Sbjct: 62 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFP 120
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
F+++G +ID+ E + +S E+ + ++ Y E SA + F
Sbjct: 121 FVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
Query: 309 DEAI 312
+EA+
Sbjct: 168 EEAV 171
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
K +++GDG VGK+ L+ Y TNKF ++ T+ F N + V G T+ ++DTAG
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV--DGHFVTMQIWDTAG 67
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE + LR Y +D L+ F
Sbjct: 68 QERFRSLRTPFYRGSDCCLLTF 89
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GDG VGK+ L+ Y TNKF ++ T+
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI 42
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
K +++GDG VGK+ L+ Y TNKF ++ T+ F N + V G T+ ++DTAG
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV--DGHFVTMQIWDTAG 65
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE + LR Y +D L+ F
Sbjct: 66 QERFRSLRTPFYRGSDCCLLTF 87
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + LR Y +D L+ FSV SF+N+ W E ++ + P
Sbjct: 60 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFP 118
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
F+++G +ID+ E + +S E+ + ++ Y E SA + F
Sbjct: 119 FVILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
Query: 309 DEAI 312
+EA+
Sbjct: 166 EEAV 169
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GDG VGK+ L+ Y TNKF ++ T+
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI 40
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 81 EGFLCVFA 88
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 119 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 161
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 54
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 81 EGFLCVFA 88
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 60 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 119 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 161
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 54
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YVPT+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YVPT+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTL 43
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE Y LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 PN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y LR Y Q ++ F + + + +W+R L
Sbjct: 72 YGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 43
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
IK VVVG+GAVGK+ ++ Y F +Y T+ D + + E L L+DTAGQ
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E++D + Y ++ F
Sbjct: 65 EEFDAITKAYYRGAQACVLVF 85
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
L+DTAGQE++D + Y ++ FS SFE + W ++ P LV
Sbjct: 58 LWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQ 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289
+IDL +D+ I E+ E LAK LK
Sbjct: 117 NKIDLLDDS------------CIKNEEAEGLAKRLK 140
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFARTM 61
IK VVVG+GAVGK+ ++ Y F +Y T+ D + + E L L
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT 95
+ + + C+L+ TT++ E + +
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISS 98
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLF 116
+R +K +++GD VGKT L+ Y KF ++Y T+ ++ VM+ T+ ++
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 117 DTAGQEDYDRLRPLSYPQTDVFLVCF 142
DTAGQE + L Y D ++ F
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVF 88
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV----------FDNYAVTVMI----GGE 49
+K +++GD VGKT L+ Y KF ++Y T+ D+ VT+ I G E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 50 PY-TLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 105
+ +LG+ F R CV+V D T + ++F + P +N+ V+
Sbjct: 69 RFQSLGVAFYRGADC--CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + L Y D ++ F V +P++F+ + + W E + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119
Query: 249 FLLVGTQIDLREDAPTLEKLAK----NKQKPISFEQGEKLAKEL-KAVKYVECSALTQKG 303
F+++G +IDL E+ K A+ +K FE K A + +A + + +AL Q+
Sbjct: 120 FVVLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178
Query: 304 LKNVFDE 310
+++E
Sbjct: 179 EVELYNE 185
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 PN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 43
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YVPT+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YVPT+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTL 43
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMV 112
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 113 LVGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 49
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMV 112
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 113 LVGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLV 252
++DTAGQE + + Y L+ + V + +SF+N+ + W+ EI + Q +L+
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLL 122
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300
G ++D ++ + E GEKLAKE + ++E SA T
Sbjct: 123 GNKVD------------SAHERVVKREDGEKLAKEY-GLPFMETSAKT 157
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAG 120
K ++VGD VGKTCLL+ + F ++ TV ++ V+ + G L ++DTAG
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE + + Y L+ +
Sbjct: 70 QERFRSVTHAYYRDAHALLLLY 91
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 37/150 (24%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQ 62
K ++VGD VGKTCLL+ + F + G T+G++F +
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAF----------------LAGTFISTVGIDFRNKVL 53
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 122
+ DG K + + +F S D +A+ L L+D +
Sbjct: 54 DV------DGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL----------LLLYDVTNKA 97
Query: 123 DYDRLRPL-----SYPQTDVFLVCFGNMMN 147
+D ++ Y Q DV L+ GN ++
Sbjct: 98 SFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLF 116
+R +K +++GD VGKT L+ Y KF ++Y T+ ++ VM+ T+ ++
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 117 DTAGQEDYDRLRPLSYPQTDVFLVCF 142
DTAGQE + L Y D ++ F
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVF 88
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV----------FDNYAVTVMI----GGE 49
+K +++GD VGKT L+ Y KF ++Y T+ D+ VT+ I G E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 50 PY-TLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 105
+ +LG+ F R CV+V D T + ++F + P +N+ V+
Sbjct: 69 RFQSLGVAFYRGADC--CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + L Y D ++ F V +P++F+ + + W E + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119
Query: 249 FLLVGTQIDL 258
F+++G +IDL
Sbjct: 120 FVVLGNKIDL 129
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L + DTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 121 QEDYDRLRPL 130
E + +R L
Sbjct: 61 TEQFTAMRDL 70
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF---ENVKEKWVPEITHHCQKTPF 249
+ DTAG E + +R L F + +S+ + S+F ++++E+ + + P
Sbjct: 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILR--VKDTEDVPM 111
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DL + ++ + EQG+ LA++ ++E SA ++ + +F
Sbjct: 112 ILVGNKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI 46
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V +
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV 46
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLF 116
+R +K +++GD VGKT L+ Y KF ++Y T+ ++ VM+ T+ ++
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 117 DTAGQEDYDRLRPLSYPQTDVFLVCF 142
DTAGQE + L Y D ++ F
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVF 88
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV----------FDNYAVTVMI----GGE 49
+K +++GD VGKT L+ Y KF ++Y T+ D+ VT+ I G E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 50 PY-TLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 105
+ +LG+ F R CV+V D T + ++F + P +N+ V+
Sbjct: 69 RFQSLGVAFYRGADC--CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + L Y D ++ F V +P++F+ + + W E + P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119
Query: 249 FLLVGTQIDL 258
F+++G +ID
Sbjct: 120 FVVLGNKIDF 129
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY P++ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY P++ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDI 55
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 19/120 (15%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL--- 250
++DTAGQE Y L P+ Y ++ F V + +SFE K KWV E+ Q P +
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQEL--QAQGNPNMVMA 121
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
L G + DL + + ++ E + A+E + ++E SA T +K +F E
Sbjct: 122 LAGNKSDLLD------------ARKVTAEDAQTYAQE-NGLFFMETSAKTATNVKEIFYE 168
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 123
K V++GD GK+ L++ + ++F T+ + + T+ + ++DTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y ++ F N + R+ W ++L
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL 110
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY P++ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 82 EGFLCVFA 89
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 61 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 119
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 120 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 162
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY P++ D+Y V+I GE
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE 55
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 38 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 94
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 95 PN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 139
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 101
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 36
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F E+ PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F E+ PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L DTAGQ++Y
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 125 DRLRPLSYPQT 135
+PQT
Sbjct: 68 S-----IFPQT 73
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL 58
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE- 68
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 69 --RFRTIT 74
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
++DTAGQE + + Y ++ + + + SF+N++ W+ I H +++
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMIL 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + D+ N ++ +S E+GEKLA + +K++E SA ++N F
Sbjct: 120 GNKCDV------------NDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAF 162
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L +
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGKTCL+ +T FP T+ ++ + TV I GE L ++DTAGQE
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y + ++ +
Sbjct: 88 FRSITQSYYRSANALILTY 106
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y + ++ + + SF + E W+ EI + K +LV
Sbjct: 79 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNKVITVLV 137
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G +IDL E ++ +S ++ E+ + E + + Y+E SA ++ +F
Sbjct: 138 GNKIDLAE------------RREVSQQRAEEFS-EAQDMYYLETSAKESDNVEKLF 180
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K V++G+ VGKTCL+ +T FP T+ ++ + TV I GE L +
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE- 66
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 67 --RFRTIT 72
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLV 252
++DTAGQE + + Y ++ + + + SF+N++ W+ I H +++
Sbjct: 59 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHASADVEKMIL 117
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + D+ N ++ +S E+GEKLA + +K++E SA ++N F
Sbjct: 118 GNKCDV------------NDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAF 160
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 57
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F +Y PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F +Y PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG+E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG+E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 43
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F +Y PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F +Y PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFL 250
+ DT GQE+Y +R + FL F++ + SFE++ ++ +I P +
Sbjct: 54 DILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMV 112
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
LVG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 113 LVGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ ++Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ ++Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDI 55
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 19/126 (15%)
Query: 188 WVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-TH 242
++ DR+ L+DTAG E + L P + V +V + + + +SF+ KW+ ++ T
Sbjct: 49 YLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTE 107
Query: 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302
+LVG + DL + ++ +S E+GE+ AKEL V ++E SA
Sbjct: 108 RGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAGY 154
Query: 303 GLKNVF 308
+K +F
Sbjct: 155 NVKQLF 160
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L L+DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 120 GQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLG 179
G E + L P SY + V ++ N V+ ++ W + TE + + +G
Sbjct: 64 GLERFRSLIP-SYIRDSTVAVVVYDITN----VNSFQQTTKWIDDVRTERGSDVIIMLVG 118
Query: 180 FITNI 184
T++
Sbjct: 119 NKTDL 123
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 PN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 43
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DT GQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DT GQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L DTAGQ++Y
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 125 DRLRPLSYPQT 135
+PQT
Sbjct: 63 S-----IFPQT 68
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL 53
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 94 EGFLCVFA 101
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ + +I + P +L
Sbjct: 73 ILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVL 131
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL P+ + + +Q + LA+ + ++E SA T++G+ + F
Sbjct: 132 VGNKCDL----PS---------RTVDTKQAQDLARSY-GIPFIETSAKTRQGVDDAF 174
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 67
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 50 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 106
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 107 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 151
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 48
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTA QE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKXDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 49
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L DTAGQ++Y
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 125 DRLRPLSYPQT 135
+PQT
Sbjct: 68 S-----IFPQT 73
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL 58
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 19/126 (15%)
Query: 188 WVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-TH 242
++ DR+ L+DTAG E + L P + V +V + + + +SF+ KW+ ++ T
Sbjct: 59 YLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTE 117
Query: 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302
+LVG + DL + ++ +S E+GE+ AKEL V ++E SA
Sbjct: 118 RGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAGY 164
Query: 303 GLKNVF 308
+K +F
Sbjct: 165 NVKQLF 170
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 48 GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMI 106
G + G +F ++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ +
Sbjct: 1 GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 60
Query: 107 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFIS 166
L L+DTAG E + L P SY + V ++ N V+ ++ W +
Sbjct: 61 EDRTVRLQLWDTAGLERFRSLIP-SYIRDSTVAVVVYDITN----VNSFQQTTKWIDDVR 115
Query: 167 TEHSPPMKLHTLGFITNI 184
TE + + +G T++
Sbjct: 116 TERGSDVIIMLVGNKTDL 133
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 50 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 106
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 107 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 151
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T + +YV T+ + + + P ++DTAGQE
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T + +YV T+
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGESEKKYVATL 48
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTA QE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTA QE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKXDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 49
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL 108
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 43
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K V++G VGKT L + +F Y PTV + Y+ V +G + + L L DTAGQ++Y
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 125 DRLRPLSY 132
L P S+
Sbjct: 86 SIL-PYSF 92
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 194 LFDTAGQEDYDRLRPLSY-PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLL 251
L DTAGQ++Y L P S+ +++ +SV S SF+ ++ + H + + P +L
Sbjct: 76 LVDTAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
VG + DL + ++ + +G+KLA+ A ++E SA + + +F +
Sbjct: 135 VGNKADL------------SPEREVQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKV 181
Query: 312 I 312
I
Sbjct: 182 I 182
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V++G VGKT L + +F Y PTV + Y+ V +G + + L L
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHL 76
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDI 55
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+M+ K VV+G VGK+ L + + F +Y PT+ D+Y V + + L + DTA
Sbjct: 2 SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTA 61
Query: 120 GQEDYDRLRPL 130
G E + +R L
Sbjct: 62 GTEQFTAMRDL 72
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT---PF 249
+ DTAG E + +R L F + +S+ + S+F ++++ + E + T P
Sbjct: 56 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD--LREQILRVKDTDDVPM 113
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DL + ++ + EQG+ LA++ ++E SA ++ + +F
Sbjct: 114 ILVGNKCDLED------------ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M+ K VV+G VGK+ L + + F +Y PT+ D+Y V + + L
Sbjct: 3 MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCML 55
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 61 FRTITSSYYRGAHGIIVVY 79
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 52 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 110
Query: 253 GTQIDL 258
G + DL
Sbjct: 111 GNKCDL 116
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L +
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 52
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 71 FRTITSSYYRGAHGIIVVY 89
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V S+ NVK+ W+ EI + + LLV
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLV 120
Query: 253 GTQIDL 258
G + DL
Sbjct: 121 GNKSDL 126
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 71 FRTITSSYYRGAHGIIVVY 89
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V S+ NVK+ W+ EI + + LLV
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYASENVNKLLV 120
Query: 253 GTQIDL 258
G + DL
Sbjct: 121 GNKSDL 126
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE- 68
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 69 --RFRTIT 74
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLV 252
++DTAGQE + + Y + ++ + V SF VK W+ EI + T LLV
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL++ ++ + ++ ++ A + + ++E SAL +++ F
Sbjct: 120 GNKCDLKD------------KRVVEYDVAKEFA-DANKMPFLETSALDSTNVEDAF 162
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE- 68
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 69 --RFRTIT 74
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLV 252
++DTAGQE + + Y + ++ + V SF VK W+ EI + T LLV
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL++ ++ + ++ ++ A + + ++E SAL +++ F
Sbjct: 120 GNKCDLKD------------KRVVEYDVAKEFA-DANKMPFLETSALDSTNVEDAF 162
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTP 248
++DTAGQE + L Y D ++ + V + SSFEN+K W E H + P
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFP 120
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
F+++G +ID A+ +K +S + ++LAK L + SA + F
Sbjct: 121 FVILGNKID-----------AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169
Query: 309 DE 310
+E
Sbjct: 170 EE 171
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLG 114
+R +K +++GD VGKT L+ Y +K+ +Y T+ F VTV G + T+
Sbjct: 3 SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVD-GDKVATMQ 61
Query: 115 LFDTAGQEDYDRLRPLSYPQTD 136
++DTAGQE + L Y D
Sbjct: 62 VWDTAGQERFQSLGVAFYRGAD 83
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GD VGKT L+ Y +K+ +Y T+
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI 41
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE- 66
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 67 --RFRTIT 72
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 117
Query: 253 GTQIDL 258
G + DL
Sbjct: 118 GNKCDL 123
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L +
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 59
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+ +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+ +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE- 66
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 67 --RFRTIT 72
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 117
Query: 253 GTQIDL 258
G + DL
Sbjct: 118 GNKCDL 123
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L +
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 59
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE- 81
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 82 --RFRTIT 87
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLV 252
++DTAGQE + + Y + ++ + V SF VK W+ EI + T LLV
Sbjct: 74 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLV 132
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL++ ++ + ++ ++ A K + ++E SAL +++ F
Sbjct: 133 GNKCDLKD------------KRVVEYDVAKEFADANK-MPFLETSALDSTNVEDAF 175
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 72
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAG E + LR Y Q ++ F V S +++NV
Sbjct: 47 VEVHPLVFHTNRGP---IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 103
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 104 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 148
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 74 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 110
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 45
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAG E + LR Y Q ++ F V S +++NV
Sbjct: 41 VEVHPLVFHTNRGP---IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 97
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 98 PN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 142
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAG E
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 68 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 104
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 39
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 70 FRTITSSYYRGAHGIIVVY 88
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 119
Query: 253 GTQIDL 258
G + DL
Sbjct: 120 GIKCDL 125
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 87 FRTITSSYYRGAHGIIVVY 105
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 78 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 136
Query: 253 GTQIDL 258
G + DL
Sbjct: 137 GNKCDL 142
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 76
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 78 FRTITSSYYRGAHGIIVVY 96
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 127
Query: 253 GTQIDL 258
G + DL
Sbjct: 128 GNKCDL 133
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 67
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 81 EGFLCVFA 88
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 60 ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 119 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 161
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE 49
K+ L I N F EY PT+ D+Y V+I GE
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE 54
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAG E+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKCDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F EY PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ +A ++ + G+ ++DTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 124 YDRLRPLSY 132
Y R+ Y
Sbjct: 67 YRRITSAYY 75
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAGQE Y R+ Y L+ + + ++ENV E+W+ E+ H +LV
Sbjct: 58 IWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLV 116
Query: 253 GTQIDLRE--DAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL----TQKGLKN 306
G + DLR PT E A ++ +SF +E SAL ++ KN
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSF---------------IETSALDSTNVEEAFKN 161
Query: 307 VFDE 310
+ E
Sbjct: 162 ILTE 165
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 38
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+K + G VGK+ L++ + T +F EY PT+ Y I E ++ + DTAGQED
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCQKTPFLLV 252
+ DTAGQED + R + F++ + + SFE V K + + + +LV
Sbjct: 80 ILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303
G + DL + + +S E+GEKLA EL A + ECSA T +G
Sbjct: 139 GNKADL------------DHSRQVSTEEGEKLATEL-ACAFYECSACTGEG 176
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+K + G VGK+ L++ + T +F EY PT+ Y I E ++
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSM 78
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 95 FRTITSSYYRGAHGIIVVY 113
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 86 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 144
Query: 253 GTQIDL 258
G + DL
Sbjct: 145 GNKCDL 150
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 84
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I N F E PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 136 DVFLVCFG 143
+ FL F
Sbjct: 76 EGFLCVFA 83
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH--HCQKTPFLL 251
+ DTAGQE+Y +R + FL F++ + SFE++ ++ +I P +L
Sbjct: 55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG + DL A T+E Q + LA+ + Y+E SA T++G+++ F
Sbjct: 114 VGNKSDLA--ARTVES-----------RQAQDLARSY-GIPYIETSAKTRQGVEDAF 156
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I N F E PT+ D+Y V+I GE L +
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDI 55
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAG 120
+ K +V+GD VGKTCL + +FP T+ D V I GE + L+DTAG
Sbjct: 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 78
Query: 121 QEDYDRLRPLSYPQTDVFLVCFGNMMNI 148
QE + + Y + +V +M N+
Sbjct: 79 QERFRKSMVQHYYRNVHAVVFVYDMTNM 106
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGL 55
+ K +V+GD VGKTCL + +FP T+ D V I GE + L
Sbjct: 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 124 YDRLRPLSYPQTDVFLVCF 142
+ + Y +V +
Sbjct: 78 FRTITSSYYRGAHGIIVVY 96
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 127
Query: 253 GTQIDL 258
G + DL
Sbjct: 128 GNKCDL 133
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGL 55
K +++GD VGK CLL+ + + + Y+ T+ ++ + T+ + G+ L +
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 69
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 188 WVRDRS----LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-TH 242
++ DR+ L+DTAG E + L P + +V + + + +SF+ KW+ ++ T
Sbjct: 56 YLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTE 114
Query: 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302
+LVG + DL + ++ +S E+GE+ AKEL V ++E SA
Sbjct: 115 RGSDVIIMLVGNKTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAGY 161
Query: 303 GLKNVF 308
+K +F
Sbjct: 162 NVKQLF 167
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLF 116
+R +K +++GD VGKT L+ Y KF ++Y T+ ++ VM+ T+ ++
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 117 DTAGQEDYDRLRPLSYPQTDVFLVCF 142
DTAG E + L Y D ++ F
Sbjct: 63 DTAGLERFQSLGVAFYRGADCCVLVF 88
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV----------FDNYAVTVMI----GGE 49
+K +++GD VGKT L+ Y KF ++Y T+ D+ VT+ I G E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 50 PY-TLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 105
+ +LG+ F R CV+V D T + ++F + P +N+ V+
Sbjct: 69 RFQSLGVAFYRGADC--CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAG 120
+ K +V+GD VGKTCL + +FP T+ D V I GE + L+DTAG
Sbjct: 28 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 87
Query: 121 QEDYDR 126
QE + +
Sbjct: 88 QERFRK 93
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGL 55
+ K +V+GD VGKTCL + +FP T+ D V I GE + L
Sbjct: 28 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 82
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLL 251
++DTAGQE ++ + Y ++ + + +F+++ KW+ I + + LL
Sbjct: 78 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLL 136
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
VG ++D D + I+ +QGEK A+++ +++ E SA + +F
Sbjct: 137 VGNKLDCETD------------REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
++ +++G VGKT L+ +T + F TV ++ + TV + G+ L ++DTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 123 DYDRLRPLSY 132
++ + Y
Sbjct: 87 RFNSITSAYY 96
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAGQE + L Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 P-NWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQE
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ L Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 43
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I + + F S+Y PT+ D+Y + G P L + DTAGQE++ +R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 136 DVFLVCFGNMMNIRRSVDWNRKL 158
FL+ F +N R+S + KL
Sbjct: 82 HGFLLVFA--INDRQSFNEVGKL 102
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT--PFLL 251
+ DTAGQE++ +R FL+ F++ SF V K +I + P +L
Sbjct: 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVL 119
Query: 252 VGTQIDL 258
VG + DL
Sbjct: 120 VGNKADL 126
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K+ L I + + F S+Y PT+ D+Y + G P L +
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDI 61
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN G ++ ++DTAG E + LR Y ++ F V S +++NV
Sbjct: 40 VEVHPLSFYTNF--GEIK-FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV 96
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284
W ++ C+ P +L G ++D++E K K K I+F + + L
Sbjct: 97 -PNWHRDLVRVCENIPIVLCGNKVDVKE--------RKVKAKTITFHRKKNL 139
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
T K V+VGDG GKT + + T +F +Y+ T+ + + ++ ++DTAG
Sbjct: 5 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 122 EDYDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
E + LR Y ++ F + + + +W+R L
Sbjct: 65 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 103
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
T K V+VGDG GKT + + T +F +Y+ T+
Sbjct: 5 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATI 38
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN G ++ ++DTAG E + LR Y ++ F V S +++NV
Sbjct: 39 VEVHPLSFYTNF--GEIK-FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV 95
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284
W ++ C+ P +L G ++D++E K K K I+F + + L
Sbjct: 96 PN-WHRDLVRVCENIPIVLCGNKVDVKE--------RKVKAKTITFHRKKNL 138
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
T K V+VGDG GKT + + T +F +Y+ T+ + + ++ ++DTAG
Sbjct: 4 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 122 EDYDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
E + LR Y ++ F + + + +W+R L
Sbjct: 64 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 102
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
T K V+VGDG GKT + + T +F +Y+ T+
Sbjct: 4 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATI 37
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 67 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYD 125
+++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L ++DTAGQE +
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 126 RLRPLSYPQTDVFLVCF 142
+ Y +V +
Sbjct: 62 TITSSYYRGAHGIIVVY 78
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y +V + V SF NVK+ W+ EI + + LLV
Sbjct: 51 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYASENVNKLLV 109
Query: 253 GTQIDL 258
G + DL
Sbjct: 110 GNKCDL 115
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTL 53
+++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + G+ L
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 49
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN P +++DTAG E + LR Y Q ++ F V S +++NV
Sbjct: 45 VEVHPLVFHTNRGP---IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278
W ++ C+ P +L G ++D+++ + + +++K + +
Sbjct: 102 -PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY 146
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAG E
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
+ LR Y Q ++ F + + + +W+R L
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 108
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGDG GKT + + T +F +YV T+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 43
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K ++G +VGK+ L I + +F PT+ + + + + G+ Y L L DTAGQ++Y
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 125 DRLRPLSYPQT 135
+PQT
Sbjct: 66 S-----IFPQT 71
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K ++G +VGK+ L I + +F PT+ + + + + G+ Y L L
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQL 56
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 173 MKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
+++H L F TN G ++ ++DTAG E + LR Y ++ F V S +++NV
Sbjct: 47 VEVHPLSFYTNF--GEIK-FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV 103
Query: 233 KEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284
W ++ C+ P +L G ++D++E K K K I+F + + L
Sbjct: 104 P-NWHRDLVRVCENIPIVLCGNKVDVKE--------RKVKAKTITFHRKKNL 146
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
T K V+VGDG GKT + + T +F +Y+ T+ + + ++ ++DTAG
Sbjct: 12 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 71
Query: 122 EDYDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
E + LR Y ++ F + + + +W+R L
Sbjct: 72 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL 110
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
T K V+VGDG GKT + + T +F +Y+ T+
Sbjct: 12 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATI 45
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
+ V G G VGK+ L++ + F Y+PTV D Y + TL + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 125 DRLRPLSYPQTDVFLVCFG 143
++ LS + F++ +
Sbjct: 65 PAMQRLSISKGHAFILVYS 83
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 40
+ V G G VGK+ L++ + F Y+PTV D Y
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 24/189 (12%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ +T +F + T+ + A V I G+ L ++DTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITN 183
+ + Y L+ + +I R +N L W S M + +G
Sbjct: 83 FRSITRSYYRGAAGALLVY----DITRRETFNH-LTSWLEDARQHSSSNMVIMLIG---- 133
Query: 184 INPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWV---PEI 240
N + R E + R L + +T C NV+E ++ EI
Sbjct: 134 -NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTAC----------NVEEAFINTAKEI 182
Query: 241 THHCQKTPF 249
Q+ F
Sbjct: 183 YRKIQQGLF 191
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLV 252
++DTAGQE + + Y L+ + + +F ++ W+ + H +L+
Sbjct: 74 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLI 132
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + E+GE A+E + ++E SA T ++ F
Sbjct: 133 GNKSDL------------ESRRDVKREEGEAFARE-HGLIFMETSAKTACNVEEAF 175
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFP 29
K +++GD VGK+CLL+ +T +F
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQ 47
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T+ + + L ++DTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE- 69
Query: 124 YDRLRPLS 131
R R ++
Sbjct: 70 --RFRTIT 75
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + + Y ++ + V SF+NVK+ W+ EI + + LLV
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAMENVNKLLV 120
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ ++ ++G +LA + +K++E SA ++ F
Sbjct: 121 GNKCDLVS------------KRVVTSDEGRELA-DSHGIKFIETSAKNAYNVEQAF 163
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ + + + Y+ T+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTI 42
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 172 PMKLHTLGFITNINPGWVRDR----SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS 227
P + T+G + + D+ ++DTAGQE Y + Y FL+ + + +
Sbjct: 49 PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQE 108
Query: 228 SFENVKEKWVPEI-THHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
SF V++ W +I T+ +LVG + DL + ++ + E G +LA
Sbjct: 109 SFAAVQD-WATQIKTYSWDNAQVILVGNKCDLED------------ERVVPAEDGRRLAD 155
Query: 287 ELKAVKYVECSALTQKGLKNVFDEAI 312
+L ++ E SA +K VF+ +
Sbjct: 156 DL-GFEFFEASAKENINVKQVFERLV 180
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ +VGKT L Y + F +V TV ++ V TV + L ++DTAGQE
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 124 YDRLRPLSYPQTDVFLVCF--GNMMNIRRSVDWNRKLGGWFW 163
Y + Y FL+ + N + DW ++ + W
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW 125
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ +VGKT L Y + F +V TV ++ V T+ + L ++DTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKLGGWFW 163
Y + Y F++ + N + DW+ ++ + W
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLV 252
++DTAGQE Y + Y F++ + + + SF V++ W +I T+ LLV
Sbjct: 58 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLV 116
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + D+ + ++ +S E+G +LA L ++ E SA +K F+ +
Sbjct: 117 GNKCDMED------------ERVVSSERGRQLADHL-GFEFFEASAKDNINVKQTFERLV 163
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTV 38
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL+ +T +F + T+ + A + I G+ L ++DTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 124 Y 124
+
Sbjct: 72 F 72
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLV 252
++DTAGQE + + Y L+ + + +F ++ W+ + H +L+
Sbjct: 63 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLI 121
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + E+GE A+E + ++E SA T ++ F
Sbjct: 122 GNKSDL------------ESRREVKKEEGEAFARE-HGLIFMETSAKTASNVEEAF 164
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFP 29
K +++GD VGK+CLL+ +T +F
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQ 36
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAGQE Y + Y L+ + + ++ENV E+W+ E+ H +LV
Sbjct: 73 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLV 131
Query: 253 GTQIDLRE--DAPTLEKLAKNKQKPISF 278
G + DLR PT E A ++ +SF
Sbjct: 132 GNKSDLRHLRAVPTDEARAFAEKNGLSF 159
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ +A ++ + G+ ++DTAGQE
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 124 Y 124
Y
Sbjct: 82 Y 82
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 53
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAGQE Y + Y L+ + + +SFEN+ EKW+ E+ + LLV
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299
G + DL+ N + + EKLA ++E SAL
Sbjct: 120 GNKSDLKHLRVI------NDNDATQYAKKEKLA-------FIETSAL 153
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV--MIGGEPYTLGLFDTAGQE 122
K V++GD VGK+ LL +T ++F E T+ +A + + ++DTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 123 DY 124
Y
Sbjct: 69 RY 70
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T ++F E T+
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTI 40
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAGQE Y + Y L+ + + ++ENV E+W+ E+ H +LV
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLV 140
Query: 253 GTQIDLRE--DAPTLEKLAKNKQKPISF 278
G + DLR PT E A ++ +SF
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSF 168
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ +A ++ + G+ ++DTAGQE
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 124 Y 124
Y
Sbjct: 91 Y 91
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 62
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDT 118
++ +K ++GD VGK+ ++ + + F PT+ ++ TV G E + ++DT
Sbjct: 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCF 142
AGQE + L P+ Y + ++ +
Sbjct: 80 AGQERFHSLAPMYYRGSAAAVIVY 103
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLV 252
++DTAGQE + L P+ Y + ++ + + SF +K KWV E+ H + +
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIA 134
Query: 253 GTQIDLRE 260
G + DL +
Sbjct: 135 GNKCDLSD 142
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ AVGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N R+ +W ++L
Sbjct: 67 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL 103
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP---FL 250
++DTAGQE Y L P+ Y +V + + + +F K WV E+ Q +P
Sbjct: 58 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAK-NWVKELQR--QASPNIVIA 114
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
L G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 115 LAGNKADLA------------SKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 159
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ AVGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N R+ +W ++L
Sbjct: 65 YHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL 101
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP---FL 250
++DTAGQE Y L P+ Y +V + + + +F K WV E+ Q +P
Sbjct: 56 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAK-NWVKELQR--QASPNIVIA 112
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
L G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 113 LAGNKADLA------------SKRAVEFQEAQAYADD-NSLLFMETSAKTAMNVNEIF 157
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 123
K +V+G GK+CLL + NKF + T+ + V+ +GG+ L ++DTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 124 Y 124
+
Sbjct: 87 F 87
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTL 53
K +V+G GK+CLL + NKF + T+ + V+ +GG+ L
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKL 76
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ AVGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N + R+ +W ++L
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P+ Y +V + + + SF K WV E+ Q +P +++
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 115
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 116 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFL 250
L+DTAGQE + L + FL+ F + S SF NV+ W+ ++ +C+ +
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIV 145
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
L+G + DL + Q+ ++ Q +LA + + Y E SA T + ++ +
Sbjct: 146 LIGNKADLPD------------QREVNERQARELADKY-GIPYFETSAATGQNVEKAVE 191
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI---------GGEPYT-- 112
IK + +GD VGKT L YT NKF +++ TV ++ ++ G+ +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 113 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
L L+DTAGQE + L + FL+ F
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMF 115
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 58
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ AVGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N + R+ +W ++L
Sbjct: 69 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 105
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P+ Y +V + + + SF K WV E+ Q +P +++
Sbjct: 60 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 116
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 117 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 161
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ +VGKT L Y + F +V TV ++ V TV + L ++DTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 123 DYDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKLGGWFW 163
Y + Y F++ + N + DW ++ + W
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW 126
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLV 252
++DTAGQE Y + Y F++ + + + SF V++ W +I T+ +LV
Sbjct: 76 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQVILV 134
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + D+ E ++ + E+G+ LA++L + E SA ++ F+ +
Sbjct: 135 GNKCDMEE------------ERVVPTEKGQLLAEQL-GFDFFEASAKENISVRQAFERLV 181
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV 56
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V+VGD +VGKTC++ + T F T+ ++ + T+ I G+ L ++DTAGQE
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 124 Y 124
+
Sbjct: 91 F 91
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLV 252
++DTAGQE + + Y + ++ + + SSF +V W+ ++ + LL+
Sbjct: 82 IWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYAGSNIVQLLI 140
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL E + +S + + LA+ + +E SA ++ F
Sbjct: 141 GNKSDLSE------------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGD +VGKTC++ + T F T+
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL +T KF ++ T+ + ++ + G+ L ++DTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162
+ + Y L+ + +I R +N L W
Sbjct: 77 FRAVTRSYYRGAAGALMVY----DITRRSTYNH-LSSWL 110
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSE 31
K +++GD VGK+CLL +T KF ++
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMAD 43
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K +++G+ +VGKT L Y + F +V TV ++ V T+ + L ++DTAG E
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKLGGWFW 163
Y + Y F++ + N + DW+ ++ + W
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSW 111
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLV 252
++DTAG E Y + Y F++ + + + SF V++ W +I T+ LLV
Sbjct: 61 IWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQVLLV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + D + ++ +S E+G +LA L ++ E SA +K F+ +
Sbjct: 120 GNKCDXED------------ERVVSSERGRQLADHL-GFEFFEASAKDNINVKQTFERLV 166
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY-------TLGLNF 57
K +++G+ +VGKT L Y + F +V TV ++ V + + T GL
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 58 ARTMQT 63
RT+ T
Sbjct: 70 YRTITT 75
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V +G+ AVGKT ++ + + F + Y T+ D + T+ + P L L+DTAGQE
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 124 YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITN 183
+ L P SY + + ++ N R+S + K W I E + + +G T+
Sbjct: 63 FRSLIP-SYIRDSAAAIVVYDITN-RQSFENTTK---WIQDILNERGKDVIIALVGNKTD 117
Query: 184 I 184
+
Sbjct: 118 L 118
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
L+DTAGQE + L P + +V + + + SFEN KW+ +I + K + LV
Sbjct: 54 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALV 112
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL + + +++E+G + A+E + E SA +K +F
Sbjct: 113 GNKTDLGD------------LRKVTYEEGXQKAQEYNTX-FHETSAKAGHNIKVLF 155
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P+ Y +V + + + SF K WV E+ Q +P +++
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 115
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 116 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 8 KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N + R+ +W ++L
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P+ Y +V + + + SF K WV E+ Q +P +++
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 115
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 116 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 8 KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N + R+ +W ++L
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P+ Y +V + + + SF K WV E+ Q +P +++
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 115
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 116 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 8 KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N + R+ +W ++L
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P+ Y +V + + + SF K WV E+ Q +P +++
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 115
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 116 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 8 KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N + R+ +W ++L
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P+ Y +V + + + SF K WV E+ Q +P +++
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 115
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ ++E SA T + +F
Sbjct: 116 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFMETSAKTSMNVNEIF 160
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 8 KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N + R+ +W ++L
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGKT LL +T N+F + T+ ++ TVM+G ++DTAG E
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 124 YDRLRPLSYPQTDVFLVCF 142
Y + Y L+ F
Sbjct: 72 YRAITSAYYRGAVGALLVF 90
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPY------TLGLNF 57
K V++G+ VGKT LL +T N+F + T+ ++ TVM+G T GL
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 58 ARTMQTIKCVVVGDGAVGKTCL--LISYTTNKFPSEYVPTVFDNYAVTVMI 106
R + + GAVG + L + T ++ ++D+ T+++
Sbjct: 72 YRAITSAYY----RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ AVGK+ L++ + +F T+ + TV + ++DTAGQE
Sbjct: 9 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P Y +V + N + R+ +W ++L
Sbjct: 69 YHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKEL 105
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV- 252
++DTAGQE Y L P Y +V + + + SF K WV E+ Q +P +++
Sbjct: 60 IWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAK-NWVKELQR--QASPNIVIA 116
Query: 253 --GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + F++ + A + ++ + E SA T + +F
Sbjct: 117 LSGNKADLA------------NKRAVDFQEAQSYADD-NSLLFXETSAKTSXNVNEIF 161
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F + T+ +A T+ I G+ ++DTAGQE
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 124 YDRLRPLSY 132
Y + Y
Sbjct: 75 YRAITSAYY 83
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAGQE Y + Y L+ + + SS+EN W+ E+ + + L+
Sbjct: 66 IWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSELRENADDNVAVGLI 124
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DL + + E+ + A+E + + + E SAL + + F+E I
Sbjct: 125 GNKSDLAH------------LRAVPTEESKTFAQENQLL-FTETSALNSENVDKAFEELI 171
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM 45
K V++GD VGK+ LL +T N+F + T+ +A +
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTL 55
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ VGKT LL +T N+F + T+ ++ TVM+G ++DTAG E
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 124 YDRLRPLSYPQTDVFLVCF 142
Y + Y L+ F
Sbjct: 87 YRAITSAYYRGAVGALLVF 105
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPY------TLGLNF 57
K V++G+ VGKT LL +T N+F + T+ ++ TVM+G T GL
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 58 ARTMQTIKCVVVGDGAVGKTCL--LISYTTNKFPSEYVPTVFDNYAVTVMI 106
R + + GAVG + L + T ++ ++D+ T+++
Sbjct: 87 YRAITSAYY----RGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 133
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++G+ AVGK+ L++ + +F T+ + +V + ++DTAGQE
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 124 YDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKL 158
Y L P+ Y +V + N R+ W ++L
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL 106
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAGQE Y L P+ Y +V + + + +F K WV E+ + + L
Sbjct: 61 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAK-TWVKELQRQASPSIVIALA 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
G + DL ++ + +E+ + A + ++ ++E SA T + ++F
Sbjct: 120 GNKADLA------------NKRMVEYEEAQAYADD-NSLLFMETSAKTAMNVNDLF 162
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI-----------GGEPYT 112
IK + +GD VGKT +L YT KF S+++ TV ++ ++ G+
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 113 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
L L+DTAG E + L + FL+ F
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLF 101
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLL 251
L+DTAG E + L + FL+ F + + SF NV+ W+ ++ H + +L
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
G + DL + Q+ + E+ +LA E + Y E SA
Sbjct: 133 CGNKSDLED------------QRAVKEEEARELA-EKYGIPYFETSA 166
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDT 118
+++ +K ++GD VGK+ ++ + + F PT+ ++ TV E + ++DT
Sbjct: 2 SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSV--DWNRKLGGWFWFISTEHSPP 172
AGQE + L P+ Y + ++ + S +W R+L +H PP
Sbjct: 62 AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL--------RQHGPP 109
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAGQE + L P+ Y + ++ + + +F +K WV E+ H + + +
Sbjct: 58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIA 116
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + +E+ AK+ A + A+ +VE SA + +F E
Sbjct: 117 GNKCDLTDVREVMERDAKD------------YADSIHAI-FVETSAKNAININELFIE 161
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 206 LRPLSYPQTDVFLVCFSVVSPSSFENVKE---KWVPEITHHCQKTPFLLVGTQIDLREDA 262
LR D FL+ FSV SF V E + HH P +LVG + DL
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDL---- 142
Query: 263 PTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ + +S E+G LA L + K++E SA + +F+ A+
Sbjct: 143 --------ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAV 183
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAG E Y + Y L+ + + ++ENV E+W+ E+ H +LV
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLV 140
Query: 253 GTQIDLRE--DAPTLEKLAKNKQKPISF 278
G + DLR PT E A ++ +SF
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSF 168
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ +A ++ + G+ ++DTAG E
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 124 Y 124
Y
Sbjct: 91 Y 91
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 62
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 215 DVFLVCFSVVSPSSFENVKE---KWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271
D FL+ FSV SF V E + HH P +LVG + DL
Sbjct: 87 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDL------------A 132
Query: 272 KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ + +S E+G LA L + K++E SA + +F+ A+
Sbjct: 133 RSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAV 172
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI---------GGEPYT-- 112
IK + +GD VGKT L YT NKF +++ TV ++ ++ G+ +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 113 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG-----NMMNIRRSVDWNRKL 158
L L+DTAG E + L + FL+ F + +N+R +W +L
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVR---NWXSQL 119
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLL 251
L+DTAG E + L + FL+ F + S SF NV+ W ++ +C+ +L
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVR-NWXSQLQANAYCENPDIVL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305
+G + DL + Q+ ++ Q +LA E + Y E SA T + ++
Sbjct: 133 IGNKADLPD------------QREVNERQARELA-EKYGIPYFETSAATGQNVE 173
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 44
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-PFLLV 252
++DTAG E Y + Y L+ + + ++ENV E+W+ E+ H +LV
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLV 119
Query: 253 GTQIDLRE--DAPTLEKLAKNKQKPISF 278
G + DLR PT E A ++ +SF
Sbjct: 120 GNKSDLRHLRAVPTDEARAFAEKNGLSF 147
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ +A ++ + G+ ++DTAG E
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 124 Y 124
Y
Sbjct: 70 Y 70
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 41
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 123
K +V+G+ GK+CLL + KF + T+ + ++ +GG+ L ++DTAGQE
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 124 Y 124
+
Sbjct: 72 F 72
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
K +V+G+ GK+CLL + KF + T+ + ++ G Y
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY 58
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK--EKWVPE 239
T I+ W + DTAGQE++ +R D FL+ +SV +SFE+V + +
Sbjct: 59 TEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 117
Query: 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
+ + P +LV ++DL L K+ ++ QG+++A + + Y+E SA
Sbjct: 118 VKDR-ESFPMILVANKVDLMH----LRKVTRD--------QGKEMATKYN-IPYIETSA 162
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I + F +Y PT+ D+Y I + L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 136 DVFLVCFG 143
D FL+ +
Sbjct: 91 DGFLIVYS 98
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ +A ++ + G+ ++DTAG E
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 124 Y 124
Y
Sbjct: 67 Y 67
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAG E Y + Y L+ + + ++ENV E+W+ E+ H + LV
Sbjct: 58 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLV 116
Query: 253 GTQIDLRE--DAPTLEKLAKNKQKPISF 278
G + DLR PT E A ++ +SF
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNGLSF 144
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 38
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I + F EY PT+ D+Y I + L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 136 DVFLVCFG 143
D FL+ +
Sbjct: 91 DGFLIVYS 98
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK--EKWVPE 239
T I+ W + DTAGQE++ +R D FL+ +SV +SFE+V + +
Sbjct: 59 TEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 117
Query: 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
+ + P +LV ++DL L K+ ++ QG+++A + + Y+E SA
Sbjct: 118 VKDR-ESFPMILVANKVDLMH----LRKVTRD--------QGKEMATKYN-IPYIETSA 162
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ +A ++ + G+ ++DTAG E
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 124 Y 124
Y
Sbjct: 73 Y 73
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAG E Y + Y L+ + + ++ENV E+W+ E+ H + LV
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLV 122
Query: 253 GTQIDLRE--DAPTLEKLAKNKQKPISF 278
G + DLR PT E A ++ +SF
Sbjct: 123 GNKSDLRHLRAVPTDEARAFAEKNGLSF 150
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 44
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 215 DVFLVCFSVVSPSSFENVKE---KWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271
D FL+ FSV SF V E + HH P +LVG + DL
Sbjct: 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH--DLPVILVGNKSDL------------A 122
Query: 272 KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ + +S E+G LA L + K++E SA + +F+ A+
Sbjct: 123 RSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGAV 162
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 123
K +V+G+ GK+CLL + KF + T+ + ++ +GG+ L ++DTAGQE
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 124 Y 124
+
Sbjct: 73 F 73
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
K +V+G+ GK+CLL + KF + T+ + ++ G Y
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY 59
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 121
K +++GD VGK+CLL +T KF ++ T+ + ++ + G+ L ++DTAGQ
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSE 31
K +++GD VGK+CLL +T KF ++
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMAD 58
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLL 251
L+DTAG E + L + FL+ F + S SF NV+ W+ ++ +C+ +L
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305
+G + DL + Q+ ++ Q +LA E + Y E SA T + ++
Sbjct: 133 IGNKADLPD------------QREVNERQARELA-EKYGIPYFETSAATGQNVE 173
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI---------GGEPYT-- 112
IK + +GD VGKT L YT NKF +++ TV ++ ++ G+ +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 113 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG-----NMMNIRRSVDWNRKL 158
L L+DTAG E + L + FL+ F + +N+R +W +L
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR---NWMSQL 119
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 44
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI---------GGEPYT-- 112
IK + +GD VGKT L YT NKF +++ TV ++ ++ G+ +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 113 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG-----NMMNIRRSVDWNRKL 158
L L+DTAG E + L + FL+ F + +N+R +W +L
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVR---NWXSQL 119
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLL 251
L+DTAG E + L + FL+ F + S SF NV+ W ++ +C+ +L
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVR-NWXSQLQANAYCENPDIVL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305
+G + DL + Q+ ++ Q +LA E + Y E SA T + ++
Sbjct: 133 IGNKADLPD------------QREVNERQARELA-EKYGIPYFETSAATGQNVE 173
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 44
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK--EKWVPE 239
T I+ W + DTAGQE++ +R D FL+ +SV +SFE+V + +
Sbjct: 54 TEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 112
Query: 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
+ + P +LV ++DL L K+ ++ QG+++A + + Y+E SA
Sbjct: 113 VKDR-ESFPMILVANKVDLMH----LRKVTRD--------QGKEMATKYN-IPYIETSA 157
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I + F +Y PT+ D+Y I + L + DTAGQE++ +R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 136 DVFLVCFG 143
D FL+ +
Sbjct: 86 DGFLIVYS 93
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK--EKWVPE 239
T I+ W + DTAGQE++ +R D FL+ +SV +SFE+V + +
Sbjct: 59 TEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 117
Query: 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298
+ + P +LV ++DL L K+ ++ QG+++A + + Y+E SA
Sbjct: 118 VKDR-ESFPMILVANKVDLMH----LRKVTRD--------QGKEMATKYN-IPYIETSA 162
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L I + F EY PT+ D+Y I + L + DTAGQE++ +R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 136 DVFLVCFG 143
D FL+ +
Sbjct: 91 DGFLIVYS 98
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLL 251
L+DTAG E + L + FL+ F + S SF NV+ W+ ++ +C+ +L
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305
+G + DL + Q+ ++ Q +LA E + Y E SA T + ++
Sbjct: 133 IGNKADLPD------------QREVNERQARELA-EKYGIPYFETSAATGQNVE 173
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 19/111 (17%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI---------GGEPYT-- 112
IK + +GD VGKT L YT NKF +++ TV ++ ++ G+ +
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 113 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG-----NMMNIRRSVDWNRKL 158
L L+DTAG E + L + FL+ F + +N+R +W +L
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVR---NWMSQL 119
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 44
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L + + T F +Y PT+ D Y + + P L + DTAG E + +R L
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 136 DVFLVCFG 143
F++ +
Sbjct: 76 QGFILVYS 83
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK--EKWVPEITHHCQKTPFL 250
+ DTAG E + +R L F++ +S+V+ SF+++K + + + +K P +
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVI 112
Query: 251 LVGTQIDL 258
LVG ++DL
Sbjct: 113 LVGNKVDL 120
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ ++G GK+ L + + T +F SEY P + D Y+ + +P L + DTA
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTA 77
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ ++G GK+ L + + T +F SEY P + D Y+ + +P L
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL 71
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +TT++F E T+ +A T+ + + ++DTAG E
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 124 YDRLRPLSY 132
Y + Y
Sbjct: 72 YRAITSAYY 80
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LV 252
++DTAG E Y + Y L+ + + SS+EN W+ E+ + + L+
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLTELRENADDNVAVGLI 121
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DL L + ++ K + E + + E SAL + F E I
Sbjct: 122 GNKSDL----AHLRAVPTDEAKNFAMEN---------QMLFTETSALNSDNVDKAFRELI 168
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +TT++F E T+
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTI 43
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 16/119 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQKTPFLLVG 253
DT G + ++ LS + F++ FSV S S E + K + +I + P +LVG
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ D Q+ + + + +A+E K ++E SA +K +F E +
Sbjct: 122 NKCD-------------ETQREVDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELL 166
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 76 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135
K+ L++ + F Y+PT+ D Y + TL + DT G + ++ LS +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 136 DVFLVCFG 143
F++ F
Sbjct: 81 HAFILVFS 88
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDT 118
++ +K ++GD VGK+ ++ + + F PT+ ++ TV E + ++DT
Sbjct: 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCF 142
AG E + L P+ Y + ++ +
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVY 86
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 123
K +V+G+ GK+CLL + KF + T+ + ++ +GG+ L ++DTAG E
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 124 Y 124
+
Sbjct: 70 F 70
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51
K +V+G+ GK+CLL + KF + T+ + ++ G Y
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY 56
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVG 253
++DTAGQE Y + PL Y +V F + + ++ + K WV ++ +LV
Sbjct: 97 IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQL-KISSNYIIILVA 154
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+ID KNK + + + +K A++ + +++ SA T +KN+F
Sbjct: 155 NKID------------KNKFQ-VDILEVQKYAQD-NNLLFIQTSAKTGTNIKNIF 195
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 115 LFDTAGQEDYDRLRPLSYPQTDVFLVCF--GNMMNIRRSVDWNRKL 158
++DTAGQE Y + PL Y +V F N + R+ W +L
Sbjct: 97 IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL 142
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMI-GGEPYTLGLFDT 118
M+ +K VV+GDGA GKT L + F +Y T+ D + + + G TL ++D
Sbjct: 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 119 AGQ 121
GQ
Sbjct: 64 GGQ 66
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
M+ +K VV+GDGA GKT L + F +Y T+
Sbjct: 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI 39
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIG-GEPYTLGLF 116
R T K ++GDG VGKT + +F Y TV N+ VT + G ++
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66
Query: 117 DTAGQEDYDRLRPLSY 132
DTAGQE L+ + Y
Sbjct: 67 DTAGQEKKAVLKDVYY 82
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLL 251
+++DTAGQE L+ + Y ++ F V S + +N+ +WV E + P ++
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVV 122
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286
+ID++ +KL K ++E E AK
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 216 VFLVCFSVVSPSSFENVKEKWVP-EITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274
+++ +S+ SFE+ E + TH P +LVG + DL + +
Sbjct: 80 AYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL------------ARCR 127
Query: 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
+S E+G A K++E SA Q + +F+
Sbjct: 128 EVSVEEGRACAVVFDC-KFIETSATLQHNVAELFE 161
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+M + V++GD VGKT L + + + D Y T+ + GE TL + DT
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 120 GQEDYDR 126
E D+
Sbjct: 61 EAEKLDK 67
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 177 TLGFITNINPGWVRDR-------SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 229
T+G P +RD+ +++D AG+E++ P Q ++L + + +
Sbjct: 34 TVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAE 93
Query: 230 ENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261
+ + W+ I +P +LVGT +D+ ++
Sbjct: 94 VDAXKPWLFNIKARASSSPVILVGTHLDVSDE 125
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 177 TLGFITNINPGWVRDR-------SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 229
T+G P +RD+ +++D AG+E++ P Q ++L + + +
Sbjct: 36 TVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAE 95
Query: 230 ENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261
+ + W+ I +P +LVGT +D+ ++
Sbjct: 96 VDAXKPWLFNIKARASSSPVILVGTHLDVSDE 127
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 215 DVFLVCFSVVSPSSFENVKEKWVP-EITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273
D +++ +SV SFE E V P +LVG + DL +
Sbjct: 74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL------------VRS 121
Query: 274 KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
+ +S ++G A K++E SA ++ +F+
Sbjct: 122 REVSVDEGRACAVVFDC-KFIETSAALHHNVQALFE 156
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 215 DVFLVCFSVVSPSSFENVKEKWVP-EITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273
D +++ +SV SFE E V P +LVG + DL +
Sbjct: 79 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL------------VRS 126
Query: 274 KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
+ +S ++G A K++E SA ++ +F+
Sbjct: 127 REVSVDEGRACAVVFDC-KFIETSAALHHNVQALFE 161
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 215 DVFLVCFSVVSPSSFENVKEKWVP-EITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273
D +++ +SV SFE E V P +LVG + DL +
Sbjct: 79 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL------------VRS 126
Query: 274 KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
+ +S ++G A K++E SA ++ +F+
Sbjct: 127 REVSVDEGRACAVVFDC-KFIETSAALHHNVQALFE 161
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex
From Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex
From Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus
In Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus
In Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex
From Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex
From Sulfolobus Solfatarius
Length = 718
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 48 GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYV 93
G+PY LG N+ + + + A LL S T K+P E +
Sbjct: 15 GDPYPLGSNWIEDDDGVNFSLFSENAEKVELLLYSLTNQKYPKEII 60
>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 589
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 70 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP 129
GDGA+ + L+ + N+ YVP + D+ Y LF E D L P
Sbjct: 468 GDGALVGSVLINPFAKNRGWIRYVPVITDHTRDRERAELGSYLYDLFSRCLSESNDGL-P 526
Query: 130 LSYP----QTDVF----LVCFGNMMNIRRS 151
L P D+F L+C N I RS
Sbjct: 527 LRGPSGCDSADLFAIDQLICRSNPTKISRS 556
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 70 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP 129
GDGA+ + L+ + N+ YVP + D+ Y LF E D L P
Sbjct: 1162 GDGALVGSVLINPFAKNRGWIRYVPVITDHTRDRERAELGSYLYDLFSRCLSESNDGL-P 1220
Query: 130 LSYP----QTDVF----LVCFGNMMNIRRS 151
L P D+F L+C N I RS
Sbjct: 1221 LRGPSGCDSADLFAIDQLICRSNPTKISRS 1250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,072,513
Number of Sequences: 62578
Number of extensions: 431592
Number of successful extensions: 1858
Number of sequences better than 100.0: 289
Number of HSP's better than 100.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 805
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)