Query psy9997
Match_columns 330
No_of_seqs 205 out of 2133
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 00:59:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 2.4E-40 5.2E-45 269.6 14.6 165 3-320 9-176 (205)
2 cd01875 RhoG RhoG subfamily. 100.0 2.5E-38 5.4E-43 269.7 20.5 191 1-330 1-191 (191)
3 KOG0092|consensus 100.0 7.2E-38 1.6E-42 254.1 16.7 164 2-318 4-169 (200)
4 KOG0078|consensus 100.0 7.4E-38 1.6E-42 258.8 14.8 163 3-318 12-176 (207)
5 KOG0098|consensus 100.0 1E-37 2.2E-42 251.1 12.6 163 3-318 6-170 (216)
6 KOG0393|consensus 100.0 3.3E-36 7.1E-41 250.2 18.8 181 61-320 2-183 (198)
7 KOG0080|consensus 100.0 5.7E-37 1.2E-41 240.6 13.4 166 3-321 11-179 (209)
8 KOG0094|consensus 100.0 3.3E-37 7.3E-42 250.1 11.5 169 57-318 16-187 (221)
9 KOG0394|consensus 100.0 1.9E-36 4E-41 243.4 14.3 167 4-320 10-182 (210)
10 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.3E-35 2.8E-40 250.6 19.3 177 2-317 4-181 (182)
11 cd04131 Rnd Rnd subfamily. Th 100.0 6.7E-36 1.4E-40 251.7 14.5 176 63-317 1-177 (178)
12 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.4E-35 9.5E-40 255.2 18.7 178 2-318 12-190 (232)
13 cd04133 Rop_like Rop subfamily 100.0 9.7E-35 2.1E-39 243.8 19.1 175 4-319 2-176 (176)
14 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.3E-34 5.1E-39 249.4 19.8 177 3-318 1-178 (222)
15 cd04134 Rho3 Rho3 subfamily. 100.0 6.4E-35 1.4E-39 248.3 15.7 188 64-330 1-189 (189)
16 KOG0079|consensus 100.0 7.2E-36 1.6E-40 231.3 8.9 161 4-317 9-170 (198)
17 KOG0087|consensus 100.0 4.1E-35 8.9E-40 241.3 13.6 162 3-317 14-177 (222)
18 cd01874 Cdc42 Cdc42 subfamily. 100.0 1E-33 2.2E-38 238.0 19.6 175 3-316 1-175 (175)
19 KOG0093|consensus 100.0 4.1E-35 9E-40 226.8 9.5 167 62-321 20-188 (193)
20 cd04121 Rab40 Rab40 subfamily. 100.0 1.6E-33 3.4E-38 239.0 18.4 104 201-318 66-169 (189)
21 cd04132 Rho4_like Rho4-like su 100.0 8.8E-34 1.9E-38 240.7 13.3 180 64-330 1-187 (187)
22 cd04120 Rab12 Rab12 subfamily. 100.0 8.6E-33 1.9E-37 236.7 18.1 105 201-318 60-165 (202)
23 cd04144 Ras2 Ras2 subfamily. 100.0 1E-33 2.2E-38 241.1 10.9 173 65-330 1-190 (190)
24 cd01871 Rac1_like Rac1-like su 100.0 2.8E-32 6.1E-37 228.9 19.5 173 3-314 1-173 (174)
25 KOG0088|consensus 100.0 1.2E-33 2.6E-38 221.3 8.9 166 3-321 13-180 (218)
26 cd01873 RhoBTB RhoBTB subfamil 100.0 6.1E-32 1.3E-36 230.6 18.3 107 207-314 81-194 (195)
27 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.1E-32 1.5E-36 226.1 17.9 167 2-321 1-169 (172)
28 smart00174 RHO Rho (Ras homolo 100.0 2.5E-32 5.4E-37 228.9 14.2 174 66-318 1-174 (174)
29 KOG0091|consensus 100.0 1.3E-32 2.8E-37 216.7 10.4 103 201-317 69-174 (213)
30 KOG0095|consensus 100.0 7E-33 1.5E-37 215.0 8.6 162 63-317 7-170 (213)
31 KOG0083|consensus 100.0 5.3E-33 1.2E-37 211.8 7.7 159 67-318 1-162 (192)
32 KOG0086|consensus 100.0 2.3E-32 4.9E-37 213.0 10.8 162 4-318 10-173 (214)
33 KOG0081|consensus 100.0 1.6E-32 3.4E-37 215.3 7.5 172 63-318 9-183 (219)
34 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.1E-31 4.6E-36 223.4 14.6 172 64-314 1-172 (173)
35 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.3E-31 2.9E-36 230.1 13.2 163 64-318 1-170 (201)
36 cd04122 Rab14 Rab14 subfamily. 100.0 1.5E-31 3.2E-36 222.7 12.7 162 63-317 2-165 (166)
37 cd04135 Tc10 TC10 subfamily. 100.0 4.9E-31 1.1E-35 221.1 14.9 174 64-316 1-174 (174)
38 cd04109 Rab28 Rab28 subfamily. 100.0 4.2E-31 9E-36 229.4 13.5 161 64-317 1-167 (215)
39 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.4E-30 7.3E-35 217.8 18.3 169 4-321 1-171 (182)
40 PTZ00369 Ras-like protein; Pro 100.0 3.2E-30 7E-35 219.4 17.9 165 1-318 3-169 (189)
41 cd04136 Rap_like Rap-like subf 100.0 4.3E-31 9.3E-36 218.7 11.8 160 63-315 1-162 (163)
42 PF00071 Ras: Ras family; Int 100.0 3E-31 6.6E-36 219.6 10.9 159 65-316 1-161 (162)
43 cd04117 Rab15 Rab15 subfamily. 100.0 5.5E-31 1.2E-35 218.3 12.4 158 64-314 1-160 (161)
44 cd04110 Rab35 Rab35 subfamily. 100.0 8.2E-31 1.8E-35 224.8 13.2 163 62-317 5-168 (199)
45 KOG0395|consensus 100.0 2E-30 4.3E-35 220.3 15.4 163 62-317 2-166 (196)
46 cd04103 Centaurin_gamma Centau 100.0 7.1E-30 1.5E-34 210.9 17.4 94 210-314 62-157 (158)
47 cd01870 RhoA_like RhoA-like su 100.0 2.5E-30 5.5E-35 216.9 14.7 174 63-315 1-174 (175)
48 cd04126 Rab20 Rab20 subfamily. 100.0 1.3E-30 2.8E-35 225.8 13.2 169 64-316 1-190 (220)
49 cd04175 Rap1 Rap1 subgroup. T 100.0 8.3E-31 1.8E-35 217.6 11.4 160 63-315 1-162 (164)
50 cd04127 Rab27A Rab27a subfamil 100.0 1E-30 2.2E-35 220.4 12.0 163 62-317 3-178 (180)
51 cd01867 Rab8_Rab10_Rab13_like 100.0 1.4E-30 3E-35 217.1 12.4 163 62-317 2-166 (167)
52 PLN03071 GTP-binding nuclear p 100.0 9.3E-30 2E-34 221.3 18.0 163 1-318 11-174 (219)
53 cd04125 RabA_like RabA-like su 100.0 2.1E-30 4.5E-35 220.3 13.7 162 64-318 1-164 (188)
54 cd04142 RRP22 RRP22 subfamily. 100.0 3.5E-30 7.6E-35 220.4 13.4 174 64-321 1-179 (198)
55 cd01865 Rab3 Rab3 subfamily. 100.0 4.7E-30 1E-34 213.4 13.0 161 64-317 2-164 (165)
56 cd04129 Rho2 Rho2 subfamily. 100.0 7.9E-30 1.7E-34 216.6 14.4 187 63-330 1-187 (187)
57 cd04119 RJL RJL (RabJ-Like) su 100.0 4E-30 8.7E-35 213.6 12.0 161 64-317 1-168 (168)
58 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.2E-30 1.1E-34 214.4 12.3 163 65-318 2-167 (170)
59 cd04112 Rab26 Rab26 subfamily. 100.0 5.5E-30 1.2E-34 218.3 12.7 162 64-318 1-165 (191)
60 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 6.8E-30 1.5E-34 212.5 12.4 162 63-317 2-165 (166)
61 cd04176 Rap2 Rap2 subgroup. T 100.0 4.7E-29 1E-33 206.8 17.4 160 3-315 1-162 (163)
62 cd04138 H_N_K_Ras_like H-Ras/N 100.0 8.2E-30 1.8E-34 210.5 11.7 159 63-315 1-161 (162)
63 cd00877 Ran Ran (Ras-related n 100.0 1.3E-29 2.7E-34 211.2 12.8 161 64-319 1-162 (166)
64 smart00176 RAN Ran (Ras-relate 100.0 8.8E-30 1.9E-34 217.8 11.9 155 69-318 1-156 (200)
65 cd04140 ARHI_like ARHI subfami 100.0 9.8E-30 2.1E-34 211.5 11.7 158 64-314 2-163 (165)
66 cd04106 Rab23_lke Rab23-like s 100.0 1.2E-29 2.5E-34 210.0 12.0 158 64-314 1-161 (162)
67 cd04116 Rab9 Rab9 subfamily. 100.0 2E-29 4.4E-34 210.5 13.3 162 61-315 3-170 (170)
68 smart00173 RAS Ras subfamily o 100.0 1.1E-29 2.4E-34 210.7 11.3 161 64-317 1-163 (164)
69 KOG0097|consensus 100.0 2.4E-29 5.1E-34 193.8 11.6 104 201-318 71-175 (215)
70 cd04111 Rab39 Rab39 subfamily. 100.0 1.6E-29 3.6E-34 218.5 12.0 163 63-318 2-168 (211)
71 cd01864 Rab19 Rab19 subfamily. 100.0 3.2E-29 7E-34 208.3 12.6 162 62-315 2-165 (165)
72 cd01868 Rab11_like Rab11-like. 100.0 3.4E-29 7.3E-34 208.0 12.5 160 63-315 3-164 (165)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.9E-29 6.3E-34 207.9 11.6 160 63-315 2-163 (164)
74 cd04124 RabL2 RabL2 subfamily. 100.0 4.7E-29 1E-33 206.7 12.6 159 64-318 1-160 (161)
75 cd04143 Rhes_like Rhes_like su 100.0 3.4E-28 7.3E-33 214.6 18.6 163 4-318 1-173 (247)
76 cd01866 Rab2 Rab2 subfamily. 100.0 6.3E-29 1.4E-33 207.3 12.7 162 63-317 4-167 (168)
77 cd04118 Rab24 Rab24 subfamily. 100.0 9.8E-29 2.1E-33 210.8 13.6 166 64-318 1-168 (193)
78 PLN03110 Rab GTPase; Provision 100.0 5.1E-29 1.1E-33 216.3 12.0 163 62-317 11-175 (216)
79 cd01892 Miro2 Miro2 subfamily. 100.0 5.8E-28 1.3E-32 201.8 17.1 103 201-317 65-167 (169)
80 cd04113 Rab4 Rab4 subfamily. 100.0 7.8E-29 1.7E-33 205.0 11.8 159 64-315 1-161 (161)
81 cd04177 RSR1 RSR1 subgroup. R 100.0 1E-28 2.3E-33 206.0 12.4 161 64-316 2-164 (168)
82 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.1E-28 2.3E-33 206.4 12.4 160 63-315 2-168 (170)
83 cd04146 RERG_RasL11_like RERG/ 100.0 7.1E-29 1.5E-33 206.3 10.2 160 65-316 1-164 (165)
84 PLN03108 Rab family protein; P 100.0 1.5E-28 3.3E-33 212.4 11.8 164 62-318 5-170 (210)
85 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.6E-28 5.7E-33 202.4 12.1 160 64-316 1-164 (164)
86 smart00175 RAB Rab subfamily o 100.0 4.6E-28 9.9E-33 200.7 12.2 161 64-317 1-163 (164)
87 cd04148 RGK RGK subfamily. Th 100.0 4.6E-28 9.9E-33 210.9 12.3 160 64-318 1-165 (221)
88 cd00157 Rho Rho (Ras homology) 100.0 9.9E-28 2.1E-32 200.1 13.4 170 64-313 1-170 (171)
89 cd01860 Rab5_related Rab5-rela 99.9 1.1E-27 2.3E-32 198.5 12.3 160 63-315 1-162 (163)
90 PLN03118 Rab family protein; P 99.9 1.3E-27 2.8E-32 206.8 12.1 165 62-319 13-180 (211)
91 cd01862 Rab7 Rab7 subfamily. 99.9 2.3E-27 5E-32 198.1 12.4 164 64-319 1-170 (172)
92 cd01861 Rab6 Rab6 subfamily. 99.9 2.6E-27 5.5E-32 195.8 12.1 158 64-314 1-160 (161)
93 cd04139 RalA_RalB RalA/RalB su 99.9 3.9E-27 8.5E-32 194.9 11.9 161 64-317 1-163 (164)
94 cd01863 Rab18 Rab18 subfamily. 99.9 6.4E-27 1.4E-31 193.4 12.7 158 64-315 1-161 (161)
95 cd01893 Miro1 Miro1 subfamily. 99.9 4.9E-27 1.1E-31 195.5 11.5 164 64-317 1-165 (166)
96 cd04137 RheB Rheb (Ras Homolog 99.9 5.3E-27 1.2E-31 197.7 11.6 174 64-330 2-180 (180)
97 cd04123 Rab21 Rab21 subfamily. 99.9 1.6E-26 3.5E-31 190.7 12.4 160 64-316 1-162 (162)
98 cd04149 Arf6 Arf6 subfamily. 99.9 1.1E-26 2.3E-31 193.9 8.9 155 61-313 7-167 (168)
99 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.6E-27 9.9E-32 195.4 6.2 152 66-313 2-163 (164)
100 cd00876 Ras Ras family. The R 99.9 2.5E-26 5.3E-31 189.2 10.1 158 65-315 1-160 (160)
101 cd04114 Rab30 Rab30 subfamily. 99.9 7.3E-26 1.6E-30 188.6 13.0 162 62-316 6-169 (169)
102 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.8E-25 3.9E-30 191.2 15.5 100 201-314 65-198 (202)
103 PTZ00132 GTP-binding nuclear p 99.9 9.8E-25 2.1E-29 189.4 18.6 165 1-320 7-172 (215)
104 PLN00223 ADP-ribosylation fact 99.9 5.2E-26 1.1E-30 192.0 9.4 159 61-317 15-179 (181)
105 cd04147 Ras_dva Ras-dva subfam 99.9 1.2E-25 2.6E-30 192.6 11.7 160 65-316 1-163 (198)
106 cd04158 ARD1 ARD1 subfamily. 99.9 7.6E-26 1.7E-30 188.9 9.6 157 65-319 1-164 (169)
107 smart00177 ARF ARF-like small 99.9 4.5E-26 9.7E-31 191.5 6.7 156 61-315 11-173 (175)
108 cd00154 Rab Rab family. Rab G 99.9 2.5E-25 5.4E-30 182.3 10.7 156 64-312 1-158 (159)
109 cd04150 Arf1_5_like Arf1-Arf5- 99.9 9.6E-26 2.1E-30 186.5 8.2 152 64-313 1-158 (159)
110 PTZ00133 ADP-ribosylation fact 99.9 2.4E-25 5.2E-30 188.2 9.4 159 61-318 15-180 (182)
111 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.5E-25 5.3E-30 188.3 9.2 165 62-321 2-175 (183)
112 PLN00023 GTP-binding protein; 99.9 2.1E-24 4.6E-29 193.5 14.7 155 1-292 19-191 (334)
113 PTZ00099 rab6; Provisional 99.9 4.1E-24 8.9E-29 179.4 15.2 143 86-321 3-147 (176)
114 KOG4252|consensus 99.9 3.1E-26 6.7E-31 183.4 0.3 112 192-317 71-182 (246)
115 cd04154 Arl2 Arl2 subfamily. 99.9 1.5E-24 3.4E-29 181.7 10.1 156 60-313 11-172 (173)
116 PRK03003 GTP-binding protein D 99.9 1.2E-23 2.7E-28 202.5 15.6 169 63-316 211-382 (472)
117 cd04157 Arl6 Arl6 subfamily. 99.9 4.1E-24 8.9E-29 176.6 8.3 152 65-313 1-161 (162)
118 TIGR03594 GTPase_EngA ribosome 99.9 2.7E-23 6E-28 198.5 14.9 170 63-316 172-344 (429)
119 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.1E-24 8.9E-29 178.1 5.4 157 65-313 1-166 (167)
120 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.2E-23 4.8E-28 174.9 9.0 153 62-313 14-173 (174)
121 cd04151 Arl1 Arl1 subfamily. 99.9 5.2E-24 1.1E-28 175.7 5.1 151 65-313 1-157 (158)
122 COG1100 GTPase SAR1 and relate 99.9 6E-23 1.3E-27 178.4 10.6 180 61-319 3-188 (219)
123 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.9E-23 8.4E-28 170.6 8.7 151 65-313 1-159 (160)
124 cd00879 Sar1 Sar1 subfamily. 99.9 7.8E-23 1.7E-27 173.8 10.4 156 61-314 17-189 (190)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.2E-22 2.7E-27 168.8 9.3 152 65-313 1-166 (167)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.6E-22 3.4E-27 166.6 9.5 151 65-313 1-157 (158)
127 TIGR02528 EutP ethanolamine ut 99.9 2.1E-22 4.6E-27 163.0 6.6 140 65-312 2-141 (142)
128 KOG0094|consensus 99.9 2E-22 4.4E-27 164.2 6.3 126 1-191 20-147 (221)
129 smart00178 SAR Sar1p-like memb 99.9 5.4E-22 1.2E-26 168.0 8.5 156 61-314 15-183 (184)
130 PRK00093 GTP-binding protein D 99.9 3.2E-21 7E-26 184.6 14.7 168 63-315 173-343 (435)
131 KOG1673|consensus 99.9 4.1E-21 8.9E-26 150.6 12.3 172 60-319 17-189 (205)
132 cd04159 Arl10_like Arl10-like 99.9 5.2E-22 1.1E-26 162.7 6.5 150 66-313 2-158 (159)
133 cd01890 LepA LepA subfamily. 99.9 6.2E-21 1.3E-25 160.4 12.8 97 201-315 78-176 (179)
134 PRK09518 bifunctional cytidyla 99.9 6.4E-21 1.4E-25 191.9 15.0 170 63-317 450-622 (712)
135 cd01897 NOG NOG1 is a nucleola 99.8 7.3E-21 1.6E-25 158.2 10.3 87 214-316 80-168 (168)
136 KOG3883|consensus 99.8 9.2E-20 2E-24 142.7 14.8 104 204-321 75-180 (198)
137 cd01898 Obg Obg subfamily. Th 99.8 1.5E-20 3.2E-25 156.6 9.3 90 211-314 76-169 (170)
138 PF00025 Arf: ADP-ribosylation 99.8 1.7E-20 3.7E-25 157.5 9.6 157 61-315 12-175 (175)
139 cd04155 Arl3 Arl3 subfamily. 99.8 1.6E-20 3.5E-25 157.0 9.4 152 61-313 12-172 (173)
140 TIGR00231 small_GTP small GTP- 99.8 2.3E-20 4.9E-25 152.3 9.6 156 63-311 1-159 (161)
141 KOG0095|consensus 99.8 1.8E-21 3.9E-26 151.6 2.6 122 4-190 8-130 (213)
142 KOG0073|consensus 99.8 6.3E-20 1.4E-24 145.4 10.2 164 61-317 14-179 (185)
143 cd04171 SelB SelB subfamily. 99.8 3E-20 6.5E-25 153.5 8.5 97 201-313 62-163 (164)
144 KOG4423|consensus 99.8 2E-21 4.4E-26 156.9 -0.0 119 189-319 74-197 (229)
145 KOG0096|consensus 99.8 5.7E-20 1.2E-24 149.0 7.5 162 63-319 10-172 (216)
146 KOG0070|consensus 99.8 7.3E-19 1.6E-23 143.0 12.8 161 60-317 14-179 (181)
147 PRK04213 GTP-binding protein; 99.8 7.5E-20 1.6E-24 156.9 6.9 165 61-317 7-193 (201)
148 PF08477 Miro: Miro-like prote 99.8 4.8E-20 1E-24 144.6 4.3 114 65-257 1-119 (119)
149 PRK12299 obgE GTPase CgtA; Rev 99.8 5.4E-19 1.2E-23 162.1 10.0 96 210-319 233-331 (335)
150 cd01878 HflX HflX subfamily. 99.8 7.8E-19 1.7E-23 151.0 9.1 161 63-315 41-204 (204)
151 KOG0393|consensus 99.8 2.7E-19 5.9E-24 149.1 4.8 120 1-185 2-122 (198)
152 cd00882 Ras_like_GTPase Ras-li 99.8 1.7E-18 3.7E-23 139.7 9.0 152 68-312 1-156 (157)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.8E-18 3.8E-23 143.7 9.0 155 65-316 2-166 (168)
154 COG1160 Predicted GTPases [Gen 99.8 2.2E-17 4.8E-22 152.2 16.7 172 62-316 177-351 (444)
155 PRK15494 era GTPase Era; Provi 99.8 2.5E-18 5.5E-23 158.6 10.5 165 61-318 50-218 (339)
156 cd01879 FeoB Ferrous iron tran 99.8 2.4E-18 5.2E-23 141.3 9.2 153 68-315 1-156 (158)
157 TIGR00436 era GTP-binding prot 99.7 3E-18 6.6E-23 153.7 8.8 162 65-317 2-165 (270)
158 cd01891 TypA_BipA TypA (tyrosi 99.7 3.1E-18 6.7E-23 146.2 7.6 98 193-305 68-171 (194)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.7 5.2E-18 1.1E-22 161.2 10.0 158 62-318 202-362 (442)
160 cd01894 EngA1 EngA1 subfamily. 99.7 5.1E-18 1.1E-22 139.0 8.5 155 67-315 1-157 (157)
161 TIGR02729 Obg_CgtA Obg family 99.7 5.6E-18 1.2E-22 155.3 9.5 161 64-315 158-328 (329)
162 PRK15467 ethanolamine utilizat 99.7 4.6E-18 1E-22 140.3 8.1 87 211-318 62-149 (158)
163 cd01881 Obg_like The Obg-like 99.7 3.7E-18 8.1E-23 142.7 7.6 91 210-314 71-175 (176)
164 cd00881 GTP_translation_factor 99.7 3.8E-18 8.3E-23 144.2 7.3 111 191-315 63-186 (189)
165 KOG1707|consensus 99.7 1.1E-18 2.4E-23 163.5 4.0 172 58-321 4-180 (625)
166 cd04131 Rnd Rnd subfamily. Th 99.7 6.1E-18 1.3E-22 142.3 7.5 117 3-185 1-118 (178)
167 PRK03003 GTP-binding protein D 99.7 7.9E-18 1.7E-22 162.3 9.1 161 63-317 38-200 (472)
168 cd04163 Era Era subfamily. Er 99.7 6.5E-18 1.4E-22 139.3 7.2 167 61-314 1-167 (168)
169 TIGR03156 GTP_HflX GTP-binding 99.7 1.2E-17 2.6E-22 154.4 9.1 160 63-314 189-350 (351)
170 KOG0075|consensus 99.7 1.9E-17 4.1E-22 128.9 8.3 156 61-315 18-181 (186)
171 PRK05291 trmE tRNA modificatio 99.7 1.1E-17 2.4E-22 159.7 8.7 155 62-317 214-371 (449)
172 TIGR01393 lepA GTP-binding pro 99.7 6.1E-17 1.3E-21 159.2 13.9 102 201-320 81-184 (595)
173 cd01895 EngA2 EngA2 subfamily. 99.7 4.7E-17 1E-21 135.3 10.1 165 63-314 2-173 (174)
174 KOG0093|consensus 99.7 9.3E-18 2E-22 130.6 4.7 135 4-203 22-161 (193)
175 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4.6E-17 9.9E-22 133.2 9.1 153 64-315 2-156 (157)
176 cd01889 SelB_euk SelB subfamil 99.7 1.9E-17 4E-22 141.1 6.7 112 193-318 71-188 (192)
177 PRK00454 engB GTP-binding prot 99.7 3.7E-17 8E-22 139.5 7.4 171 60-316 21-194 (196)
178 TIGR00487 IF-2 translation ini 99.7 1.1E-16 2.3E-21 156.7 11.4 151 62-314 86-248 (587)
179 TIGR03598 GTPase_YsxC ribosome 99.7 2.5E-17 5.5E-22 138.7 5.0 161 59-305 14-179 (179)
180 PF02421 FeoB_N: Ferrous iron 99.7 1.8E-17 3.8E-22 134.8 3.8 155 64-311 1-156 (156)
181 KOG0071|consensus 99.7 3.3E-16 7.2E-21 121.1 10.3 159 61-316 15-178 (180)
182 PRK12297 obgE GTPase CgtA; Rev 99.7 2.3E-16 4.9E-21 148.5 11.1 91 211-319 234-330 (424)
183 PRK11058 GTPase HflX; Provisio 99.7 1.8E-16 3.9E-21 149.9 9.8 164 64-317 198-363 (426)
184 PRK00093 GTP-binding protein D 99.7 1.5E-16 3.2E-21 152.4 9.2 158 64-315 2-161 (435)
185 PRK00089 era GTPase Era; Revie 99.7 1.5E-16 3.3E-21 144.4 8.6 169 61-318 3-173 (292)
186 cd04105 SR_beta Signal recogni 99.7 2.2E-16 4.8E-21 135.6 8.0 116 65-261 2-124 (203)
187 TIGR03594 GTPase_EngA ribosome 99.6 3.2E-16 6.9E-21 149.9 9.1 160 65-318 1-162 (429)
188 TIGR00475 selB selenocysteine- 99.6 3.6E-16 7.9E-21 153.6 8.8 156 64-317 1-167 (581)
189 CHL00189 infB translation init 99.6 5.3E-16 1.1E-20 154.1 9.6 153 62-315 243-409 (742)
190 cd01888 eIF2_gamma eIF2-gamma 99.6 4.2E-16 9.1E-21 134.0 6.8 113 191-319 84-202 (203)
191 PRK05306 infB translation init 99.6 1.3E-15 2.9E-20 152.6 11.0 157 60-314 287-450 (787)
192 TIGR00437 feoB ferrous iron tr 99.6 7.8E-16 1.7E-20 151.4 8.4 151 70-315 1-154 (591)
193 cd01896 DRG The developmentall 99.6 1.9E-15 4.2E-20 132.4 9.8 214 65-315 2-225 (233)
194 PRK12296 obgE GTPase CgtA; Rev 99.6 1.4E-15 3E-20 145.0 9.0 166 64-318 160-342 (500)
195 TIGR00491 aIF-2 translation in 99.6 1.4E-15 2.9E-20 148.8 9.1 116 192-314 71-214 (590)
196 PRK05433 GTP-binding protein L 99.6 7.7E-15 1.7E-19 144.5 14.3 101 201-319 85-187 (600)
197 cd04122 Rab14 Rab14 subfamily. 99.6 1.1E-15 2.4E-20 126.9 6.4 119 3-186 2-121 (166)
198 cd00880 Era_like Era (E. coli 99.6 2.6E-15 5.7E-20 122.3 8.4 92 209-314 71-162 (163)
199 KOG0072|consensus 99.6 4.2E-15 9.1E-20 115.5 8.7 158 62-317 17-180 (182)
200 PRK09518 bifunctional cytidyla 99.6 3.5E-15 7.6E-20 150.5 10.0 160 64-317 276-437 (712)
201 cd04136 Rap_like Rap-like subf 99.6 2.4E-15 5.3E-20 124.1 7.3 118 3-185 1-119 (163)
202 KOG0395|consensus 99.6 1.6E-15 3.4E-20 129.0 5.6 126 1-191 1-127 (196)
203 cd04134 Rho3 Rho3 subfamily. 99.6 4.1E-15 8.9E-20 126.4 7.8 117 4-186 1-118 (189)
204 TIGR00483 EF-1_alpha translati 99.6 4.3E-15 9.2E-20 141.7 8.6 100 201-308 96-199 (426)
205 KOG1532|consensus 99.6 2.1E-16 4.6E-21 135.7 -0.3 226 3-317 19-265 (366)
206 cd04175 Rap1 Rap1 subgroup. T 99.6 2.9E-15 6.2E-20 124.0 6.1 118 3-185 1-119 (164)
207 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.4E-15 5.3E-20 125.5 5.7 116 5-185 2-119 (170)
208 PRK12298 obgE GTPase CgtA; Rev 99.6 6.2E-15 1.3E-19 138.0 9.0 95 210-318 234-335 (390)
209 cd04117 Rab15 Rab15 subfamily. 99.6 3.8E-15 8.3E-20 123.2 6.6 118 4-186 1-119 (161)
210 PRK09554 feoB ferrous iron tra 99.6 1.1E-14 2.3E-19 146.7 10.3 166 61-315 1-167 (772)
211 cd04144 Ras2 Ras2 subfamily. 99.6 3.1E-15 6.7E-20 127.2 5.2 117 5-186 1-120 (190)
212 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 6E-15 1.3E-19 126.6 6.1 117 4-185 1-123 (201)
213 cd01876 YihA_EngB The YihA (En 99.5 9.2E-15 2E-19 120.7 6.5 162 65-314 1-169 (170)
214 cd04167 Snu114p Snu114p subfam 99.5 2.5E-14 5.4E-19 123.9 9.4 98 201-305 82-192 (213)
215 PF10662 PduV-EutP: Ethanolami 99.5 1.6E-14 3.4E-19 115.0 7.4 82 210-311 60-141 (143)
216 cd01865 Rab3 Rab3 subfamily. 99.5 1.1E-14 2.3E-19 120.9 6.7 118 4-186 2-120 (165)
217 PF00071 Ras: Ras family; Int 99.5 4.2E-15 9.2E-20 122.7 3.8 117 5-186 1-118 (162)
218 cd01867 Rab8_Rab10_Rab13_like 99.5 1.3E-14 2.8E-19 120.7 6.5 120 2-186 2-122 (167)
219 cd04138 H_N_K_Ras_like H-Ras/N 99.5 1.5E-14 3.2E-19 119.0 6.2 118 3-185 1-119 (162)
220 cd04130 Wrch_1 Wrch-1 subfamil 99.5 3.4E-14 7.4E-19 118.8 8.0 117 4-185 1-117 (173)
221 cd00877 Ran Ran (Ras-related n 99.5 3.1E-14 6.7E-19 118.4 7.4 116 4-185 1-117 (166)
222 smart00173 RAS Ras subfamily o 99.5 1.8E-14 3.9E-19 119.1 5.9 119 4-187 1-120 (164)
223 COG1160 Predicted GTPases [Gen 99.5 2.4E-14 5.1E-19 132.3 7.2 159 64-315 4-164 (444)
224 cd04125 RabA_like RabA-like su 99.5 2.2E-14 4.8E-19 121.6 6.5 117 4-185 1-118 (188)
225 PRK04004 translation initiatio 99.5 3.1E-14 6.6E-19 139.8 8.3 115 192-313 73-215 (586)
226 KOG0083|consensus 99.5 7.6E-16 1.7E-20 118.0 -2.5 114 8-186 2-117 (192)
227 cd04140 ARHI_like ARHI subfami 99.5 4.4E-14 9.4E-19 117.2 7.7 118 4-186 2-122 (165)
228 COG1159 Era GTPase [General fu 99.5 7.2E-14 1.6E-18 122.6 9.2 170 60-318 3-174 (298)
229 PLN03110 Rab GTPase; Provision 99.5 2.5E-14 5.5E-19 124.1 6.2 118 3-185 12-130 (216)
230 cd04119 RJL RJL (RabJ-Like) su 99.5 2.2E-14 4.7E-19 118.7 5.5 117 4-185 1-123 (168)
231 cd04104 p47_IIGP_like p47 (47- 99.5 1.6E-14 3.5E-19 123.5 4.8 102 210-318 77-186 (197)
232 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 3.4E-14 7.3E-19 117.9 6.5 118 3-185 2-120 (166)
233 COG2229 Predicted GTPase [Gene 99.5 2E-13 4.4E-18 111.2 10.8 107 194-317 72-180 (187)
234 PF00009 GTP_EFTU: Elongation 99.5 2.2E-14 4.8E-19 121.7 5.3 109 193-315 73-186 (188)
235 cd04124 RabL2 RabL2 subfamily. 99.5 4.5E-14 9.7E-19 116.7 7.0 115 4-184 1-116 (161)
236 PRK12317 elongation factor 1-a 99.5 5.6E-14 1.2E-18 134.1 8.6 109 191-308 85-197 (425)
237 cd04109 Rab28 Rab28 subfamily. 99.5 2.8E-14 6.1E-19 123.7 5.9 117 4-185 1-122 (215)
238 TIGR03680 eif2g_arch translati 99.5 3.7E-14 8E-19 134.3 7.0 112 191-318 81-198 (406)
239 cd04132 Rho4_like Rho4-like su 99.5 3.4E-14 7.4E-19 120.3 6.0 117 4-186 1-119 (187)
240 smart00176 RAN Ran (Ras-relate 99.5 2.4E-14 5.3E-19 122.5 5.1 111 9-185 1-112 (200)
241 cd04115 Rab33B_Rab33A Rab33B/R 99.5 4E-14 8.7E-19 118.0 6.3 121 2-186 1-123 (170)
242 cd04145 M_R_Ras_like M-Ras/R-R 99.5 5E-14 1.1E-18 116.3 6.7 119 2-185 1-120 (164)
243 smart00174 RHO Rho (Ras homolo 99.5 6.2E-14 1.3E-18 117.1 7.2 116 6-186 1-116 (174)
244 cd04110 Rab35 Rab35 subfamily. 99.5 6.2E-14 1.3E-18 120.1 7.3 118 3-186 6-124 (199)
245 cd01864 Rab19 Rab19 subfamily. 99.5 4.7E-14 1E-18 116.9 6.3 119 2-185 2-121 (165)
246 cd04116 Rab9 Rab9 subfamily. 99.5 5.6E-14 1.2E-18 117.0 6.4 120 1-185 3-127 (170)
247 KOG0076|consensus 99.5 1.4E-14 3.1E-19 116.2 2.5 113 192-318 71-189 (197)
248 cd04118 Rab24 Rab24 subfamily. 99.5 1E-13 2.2E-18 118.0 7.7 116 4-185 1-118 (193)
249 cd04111 Rab39 Rab39 subfamily. 99.5 4.7E-14 1E-18 122.0 5.7 119 3-186 2-123 (211)
250 cd04127 Rab27A Rab27a subfamil 99.5 5E-14 1.1E-18 118.4 5.5 119 3-186 4-134 (180)
251 KOG1423|consensus 99.5 2.3E-13 5E-18 118.9 9.5 188 60-317 69-272 (379)
252 cd04135 Tc10 TC10 subfamily. 99.5 1.7E-13 3.8E-18 114.4 8.5 118 4-186 1-118 (174)
253 PRK04000 translation initiatio 99.5 1.3E-13 2.8E-18 130.6 8.5 112 191-318 86-203 (411)
254 PRK10512 selenocysteinyl-tRNA- 99.5 1.5E-13 3.1E-18 135.8 9.1 106 194-316 55-166 (614)
255 cd04142 RRP22 RRP22 subfamily. 99.5 1.1E-13 2.4E-18 118.4 6.9 126 4-186 1-130 (198)
256 cd04177 RSR1 RSR1 subgroup. R 99.4 1.8E-13 3.9E-18 113.8 7.6 118 3-185 1-119 (168)
257 KOG0074|consensus 99.4 7E-14 1.5E-18 108.4 4.6 159 59-313 13-176 (185)
258 cd01868 Rab11_like Rab11-like. 99.4 1.1E-13 2.3E-18 114.6 6.1 118 3-185 3-121 (165)
259 cd04165 GTPBP1_like GTPBP1-lik 99.4 6.3E-13 1.4E-17 115.7 11.1 96 213-312 109-219 (224)
260 KOG0081|consensus 99.4 1.4E-15 3E-20 120.0 -5.0 131 4-191 10-143 (219)
261 cd01866 Rab2 Rab2 subfamily. 99.4 1.5E-13 3.2E-18 114.4 6.3 118 3-185 4-122 (168)
262 PLN03108 Rab family protein; P 99.4 1.8E-13 3.9E-18 118.2 6.6 119 3-186 6-125 (210)
263 cd04112 Rab26 Rab26 subfamily. 99.4 1.7E-13 3.6E-18 116.6 6.2 117 4-185 1-119 (191)
264 cd04106 Rab23_lke Rab23-like s 99.4 1.3E-13 2.8E-18 113.7 5.1 117 4-186 1-120 (162)
265 cd04113 Rab4 Rab4 subfamily. 99.4 1.8E-13 3.9E-18 112.8 5.8 117 4-185 1-118 (161)
266 cd04146 RERG_RasL11_like RERG/ 99.4 1.2E-13 2.5E-18 114.6 4.7 117 5-185 1-119 (165)
267 cd01870 RhoA_like RhoA-like su 99.4 4.9E-13 1.1E-17 111.7 8.1 118 3-185 1-118 (175)
268 COG1100 GTPase SAR1 and relate 99.4 1.7E-13 3.7E-18 118.9 5.2 122 1-186 3-125 (219)
269 PRK10218 GTP-binding protein; 99.4 6E-13 1.3E-17 130.7 9.5 112 192-318 70-197 (607)
270 COG0486 ThdF Predicted GTPase 99.4 4.2E-13 9.2E-18 124.4 7.6 160 63-318 217-378 (454)
271 cd04126 Rab20 Rab20 subfamily. 99.4 3.2E-13 7E-18 117.1 6.3 112 4-185 1-113 (220)
272 TIGR01394 TypA_BipA GTP-bindin 99.4 3.8E-13 8.1E-18 132.2 7.1 113 192-319 66-194 (594)
273 cd01850 CDC_Septin CDC/Septin. 99.4 5E-13 1.1E-17 119.9 7.2 59 63-121 4-73 (276)
274 cd04168 TetM_like Tet(M)-like 99.4 5.8E-13 1.3E-17 117.0 7.2 120 192-315 66-234 (237)
275 cd04166 CysN_ATPS CysN_ATPS su 99.4 3.5E-13 7.6E-18 116.3 5.6 106 191-307 78-185 (208)
276 cd01860 Rab5_related Rab5-rela 99.4 6.9E-13 1.5E-17 109.4 6.3 119 3-186 1-120 (163)
277 smart00175 RAB Rab subfamily o 99.4 5.4E-13 1.2E-17 110.0 5.4 118 4-186 1-119 (164)
278 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 3.8E-13 8.3E-18 111.6 4.0 113 6-187 2-114 (164)
279 smart00010 small_GTPase Small 99.4 5.6E-12 1.2E-16 99.0 10.2 72 210-305 43-115 (124)
280 cd01861 Rab6 Rab6 subfamily. 99.4 8.6E-13 1.9E-17 108.6 5.7 117 4-185 1-118 (161)
281 TIGR00157 ribosome small subun 99.4 2.4E-12 5.2E-17 113.6 8.4 96 201-313 24-120 (245)
282 cd04101 RabL4 RabL4 (Rab-like4 99.3 7.7E-13 1.7E-17 109.3 5.0 117 4-186 1-121 (164)
283 cd04148 RGK RGK subfamily. Th 99.3 1.8E-12 3.9E-17 112.8 7.0 116 4-186 1-120 (221)
284 COG0370 FeoB Fe2+ transport sy 99.3 2.5E-12 5.4E-17 124.2 8.2 165 61-319 1-167 (653)
285 cd00157 Rho Rho (Ras homology) 99.3 3.8E-12 8.2E-17 105.8 8.0 118 4-186 1-118 (171)
286 cd04149 Arf6 Arf6 subfamily. 99.3 6.9E-13 1.5E-17 110.5 3.0 115 2-185 8-123 (168)
287 cd04147 Ras_dva Ras-dva subfam 99.3 2.2E-12 4.9E-17 110.3 6.0 117 5-186 1-118 (198)
288 PLN00223 ADP-ribosylation fact 99.3 8.9E-13 1.9E-17 111.2 3.3 116 2-186 16-132 (181)
289 smart00177 ARF ARF-like small 99.3 2.9E-12 6.3E-17 107.4 6.1 116 2-186 12-128 (175)
290 cd01884 EF_Tu EF-Tu subfamily. 99.3 3.6E-12 7.8E-17 108.6 6.5 100 192-304 67-171 (195)
291 cd04123 Rab21 Rab21 subfamily. 99.3 3.7E-12 8E-17 104.6 6.1 118 4-186 1-119 (162)
292 PRK12735 elongation factor Tu; 99.3 6.6E-12 1.4E-16 118.6 8.3 111 192-315 77-202 (396)
293 TIGR00485 EF-Tu translation el 99.3 6.7E-12 1.4E-16 118.6 8.4 95 192-302 77-179 (394)
294 cd04129 Rho2 Rho2 subfamily. 99.3 7.7E-12 1.7E-16 106.0 7.6 116 4-185 2-118 (187)
295 cd01862 Rab7 Rab7 subfamily. 99.3 4.5E-12 9.8E-17 105.4 5.8 117 4-185 1-122 (172)
296 cd04150 Arf1_5_like Arf1-Arf5- 99.3 1.6E-12 3.5E-17 107.2 2.9 113 4-185 1-114 (159)
297 COG0532 InfB Translation initi 99.3 3.2E-11 6.9E-16 113.5 11.6 108 193-315 58-169 (509)
298 cd01899 Ygr210 Ygr210 subfamil 99.3 1.2E-11 2.7E-16 112.7 8.5 78 66-143 1-108 (318)
299 PRK12736 elongation factor Tu; 99.3 1.4E-11 3E-16 116.3 8.8 112 192-316 77-201 (394)
300 PLN03118 Rab family protein; P 99.3 8.9E-12 1.9E-16 107.7 6.8 118 3-186 14-134 (211)
301 cd01863 Rab18 Rab18 subfamily. 99.3 1.1E-11 2.5E-16 101.9 7.2 117 4-185 1-119 (161)
302 cd01883 EF1_alpha Eukaryotic e 99.3 4.2E-12 9.2E-17 110.4 4.4 107 191-305 78-194 (219)
303 cd01893 Miro1 Miro1 subfamily. 99.3 1E-11 2.2E-16 103.1 6.4 116 4-186 1-117 (166)
304 cd04114 Rab30 Rab30 subfamily. 99.2 1.2E-11 2.7E-16 102.6 6.8 119 3-186 7-126 (169)
305 cd04139 RalA_RalB RalA/RalB su 99.2 1.1E-11 2.4E-16 102.0 6.2 117 4-185 1-118 (164)
306 cd01885 EF2 EF2 (for archaea a 99.2 6.4E-11 1.4E-15 102.8 10.8 63 193-259 76-138 (222)
307 PTZ00133 ADP-ribosylation fact 99.2 4.4E-12 9.5E-17 107.1 3.0 114 3-185 17-131 (182)
308 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 2E-11 4.4E-16 105.9 7.1 176 65-322 1-182 (232)
309 COG2262 HflX GTPases [General 99.2 6.1E-11 1.3E-15 108.3 9.4 164 63-317 192-357 (411)
310 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 1.3E-11 2.9E-16 104.2 4.7 118 2-185 2-122 (183)
311 PRK13351 elongation factor G; 99.2 2.8E-11 6.1E-16 122.1 7.7 67 191-261 74-140 (687)
312 cd04170 EF-G_bact Elongation f 99.2 4.8E-11 1E-15 107.0 8.3 66 192-261 66-131 (268)
313 COG3596 Predicted GTPase [Gene 99.2 5.7E-12 1.2E-16 109.3 2.0 183 60-316 36-222 (296)
314 cd04161 Arl2l1_Arl13_like Arl2 99.2 2.2E-11 4.8E-16 101.2 4.9 113 5-186 1-114 (167)
315 PLN00043 elongation factor 1-a 99.2 1.8E-10 3.8E-15 110.1 11.5 105 194-306 89-203 (447)
316 KOG1489|consensus 99.2 1E-10 2.2E-15 103.1 8.4 87 211-313 272-364 (366)
317 cd04158 ARD1 ARD1 subfamily. 99.2 2.1E-11 4.5E-16 101.6 4.0 112 5-185 1-113 (169)
318 PF08477 Miro: Miro-like prote 99.2 2.5E-11 5.4E-16 94.8 4.0 116 5-183 1-119 (119)
319 COG0218 Predicted GTPase [Gene 99.2 6.1E-11 1.3E-15 98.9 6.2 169 62-317 23-198 (200)
320 cd00154 Rab Rab family. Rab G 99.1 4.1E-11 8.9E-16 97.6 5.1 117 4-185 1-118 (159)
321 cd04169 RF3 RF3 subfamily. Pe 99.1 9.4E-11 2E-15 104.7 7.8 67 191-261 72-138 (267)
322 KOG0705|consensus 99.1 1.3E-10 2.9E-15 108.6 8.8 165 58-318 25-191 (749)
323 cd00876 Ras Ras family. The R 99.1 3.7E-11 8E-16 98.4 4.5 116 5-185 1-117 (160)
324 cd04137 RheB Rheb (Ras Homolog 99.1 5.2E-11 1.1E-15 100.0 5.1 117 4-185 2-119 (180)
325 PRK00741 prfC peptide chain re 99.1 1.4E-10 3E-15 112.8 8.6 67 192-262 81-147 (526)
326 CHL00071 tufA elongation facto 99.1 9.3E-11 2E-15 111.2 7.2 99 192-303 77-180 (409)
327 PRK09866 hypothetical protein; 99.1 1.6E-10 3.4E-15 111.6 8.5 110 190-313 230-350 (741)
328 COG1084 Predicted GTPase [Gene 99.1 8.1E-11 1.8E-15 104.5 6.0 166 64-318 169-338 (346)
329 cd04154 Arl2 Arl2 subfamily. 99.1 5.2E-11 1.1E-15 99.5 4.6 116 1-185 12-128 (173)
330 PRK05124 cysN sulfate adenylyl 99.1 7.3E-10 1.6E-14 106.8 12.3 104 193-307 110-216 (474)
331 PF09439 SRPRB: Signal recogni 99.1 2.1E-11 4.5E-16 101.5 1.2 52 210-261 72-127 (181)
332 TIGR02034 CysN sulfate adenyly 99.1 7.8E-10 1.7E-14 104.8 12.0 102 194-306 84-187 (406)
333 COG1163 DRG Predicted GTPase [ 99.1 3.5E-10 7.5E-15 100.2 8.7 215 63-315 63-288 (365)
334 TIGR00503 prfC peptide chain r 99.1 3E-10 6.4E-15 110.5 8.7 66 192-261 82-147 (527)
335 PRK00049 elongation factor Tu; 99.1 3.2E-10 7E-15 107.1 8.7 110 193-315 78-202 (396)
336 cd04157 Arl6 Arl6 subfamily. 99.1 7E-11 1.5E-15 97.2 2.8 114 5-186 1-118 (162)
337 COG4917 EutP Ethanolamine util 99.1 2.7E-10 5.9E-15 86.9 5.5 83 210-313 61-143 (148)
338 PRK14845 translation initiatio 99.0 1.1E-09 2.4E-14 112.8 11.1 116 192-314 528-671 (1049)
339 KOG1145|consensus 99.0 7.3E-10 1.6E-14 104.1 8.5 109 192-315 203-315 (683)
340 KOG0090|consensus 99.0 2.4E-09 5.2E-14 89.4 10.3 101 213-314 108-237 (238)
341 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 2.7E-10 5.7E-15 95.4 4.8 115 2-185 14-129 (174)
342 KOG1707|consensus 99.0 9.6E-10 2.1E-14 104.0 8.8 162 62-319 424-586 (625)
343 PLN03126 Elongation factor Tu; 99.0 5.4E-10 1.2E-14 107.4 7.2 100 191-303 145-249 (478)
344 KOG0462|consensus 99.0 2.9E-09 6.3E-14 100.1 11.5 105 201-321 136-240 (650)
345 KOG1191|consensus 99.0 3.2E-10 6.9E-15 105.4 4.3 173 62-318 267-452 (531)
346 PRK09602 translation-associate 99.0 7.9E-10 1.7E-14 103.9 7.1 80 64-143 2-111 (396)
347 PLN03127 Elongation factor Tu; 99.0 1.2E-09 2.6E-14 104.3 8.3 111 193-316 127-252 (447)
348 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 2.9E-09 6.2E-14 90.9 9.7 98 211-318 81-186 (196)
349 PF01926 MMR_HSR1: 50S ribosom 99.0 4.3E-10 9.3E-15 87.6 4.2 55 65-121 1-57 (116)
350 PRK05506 bifunctional sulfate 99.0 1.1E-09 2.5E-14 109.5 8.2 104 192-306 106-211 (632)
351 KOG0096|consensus 99.0 1E-09 2.3E-14 89.7 5.9 118 2-185 9-127 (216)
352 PRK13768 GTPase; Provisional 98.9 5.2E-10 1.1E-14 99.2 4.0 125 191-315 98-246 (253)
353 cd04156 ARLTS1 ARLTS1 subfamil 98.9 6.2E-10 1.3E-14 91.4 3.9 113 5-185 1-114 (160)
354 TIGR00484 EF-G translation elo 98.9 2.8E-09 6.1E-14 107.6 9.4 66 192-261 77-142 (689)
355 cd04151 Arl1 Arl1 subfamily. 98.9 4.6E-10 9.9E-15 92.2 2.9 112 5-185 1-113 (158)
356 COG0536 Obg Predicted GTPase [ 98.9 2.7E-09 5.8E-14 95.4 7.8 95 211-318 235-335 (369)
357 cd01886 EF-G Elongation factor 98.9 7.2E-09 1.6E-13 92.7 9.8 57 201-261 75-131 (270)
358 TIGR00101 ureG urease accessor 98.9 1.9E-08 4.2E-13 85.9 11.8 83 214-316 113-196 (199)
359 PTZ00327 eukaryotic translatio 98.9 4.1E-09 8.8E-14 100.7 8.0 115 191-318 118-235 (460)
360 cd04159 Arl10_like Arl10-like 98.9 3.4E-09 7.3E-14 86.3 6.2 53 5-60 1-53 (159)
361 cd00879 Sar1 Sar1 subfamily. 98.9 2E-09 4.3E-14 91.2 5.0 115 2-185 18-133 (190)
362 PTZ00141 elongation factor 1- 98.9 1.5E-08 3.3E-13 96.9 11.5 103 195-306 90-203 (446)
363 KOG0077|consensus 98.9 1.6E-09 3.6E-14 86.7 3.7 107 192-313 66-190 (193)
364 KOG3905|consensus 98.9 1E-08 2.2E-13 90.8 8.7 66 247-317 223-291 (473)
365 cd04160 Arfrp1 Arfrp1 subfamil 98.8 5.4E-09 1.2E-13 86.4 6.4 113 5-185 1-120 (167)
366 KOG0082|consensus 98.8 2.4E-08 5.3E-13 90.9 10.9 129 190-318 195-346 (354)
367 TIGR00073 hypB hydrogenase acc 98.8 4.2E-09 9E-14 90.8 5.6 81 214-314 124-205 (207)
368 PRK12740 elongation factor G; 98.8 5.2E-09 1.1E-13 105.6 6.7 67 191-261 61-127 (668)
369 TIGR00231 small_GTP small GTP- 98.8 5.6E-09 1.2E-13 84.6 5.7 58 3-60 1-59 (161)
370 cd00878 Arf_Arl Arf (ADP-ribos 98.8 4.9E-09 1.1E-13 85.9 4.7 112 5-185 1-113 (158)
371 smart00178 SAR Sar1p-like memb 98.8 4.9E-09 1.1E-13 88.5 4.6 114 3-185 17-131 (184)
372 COG0481 LepA Membrane GTPase L 98.8 4.4E-08 9.5E-13 90.9 10.9 96 208-321 94-191 (603)
373 cd01855 YqeH YqeH. YqeH is an 98.8 2.8E-08 6.1E-13 84.3 8.9 94 203-315 24-124 (190)
374 PF05783 DLIC: Dynein light in 98.8 2.2E-08 4.7E-13 95.6 8.8 71 247-321 197-269 (472)
375 KOG1673|consensus 98.7 5.7E-09 1.2E-13 82.6 2.4 58 3-60 20-78 (205)
376 PRK12739 elongation factor G; 98.7 1.6E-07 3.4E-12 95.0 13.4 57 201-261 84-140 (691)
377 TIGR00490 aEF-2 translation el 98.7 6.4E-09 1.4E-13 105.3 3.1 65 192-260 88-152 (720)
378 cd04105 SR_beta Signal recogni 98.7 1E-08 2.2E-13 88.1 3.3 117 5-185 2-122 (203)
379 TIGR00991 3a0901s02IAP34 GTP-b 98.7 2.8E-08 6E-13 89.4 5.2 60 60-121 35-96 (313)
380 PRK00098 GTPase RsgA; Reviewed 98.7 6.5E-08 1.4E-12 88.0 7.7 87 210-312 77-163 (298)
381 KOG1144|consensus 98.6 3.8E-08 8.3E-13 95.4 6.2 132 192-330 542-705 (1064)
382 TIGR03597 GTPase_YqeH ribosome 98.6 8.7E-08 1.9E-12 89.4 8.4 95 201-314 51-151 (360)
383 KOG0084|consensus 98.6 1.9E-08 4E-13 83.1 3.3 45 63-107 9-54 (205)
384 KOG1490|consensus 98.6 3.5E-08 7.6E-13 92.1 5.5 90 215-318 249-343 (620)
385 PF00025 Arf: ADP-ribosylation 98.6 5.2E-08 1.1E-12 81.6 5.5 160 2-239 13-173 (175)
386 cd01853 Toc34_like Toc34-like 98.6 6.1E-08 1.3E-12 85.6 6.0 59 61-121 29-89 (249)
387 PF03029 ATP_bind_1: Conserved 98.6 4.5E-10 9.7E-15 98.5 -7.6 122 191-315 92-236 (238)
388 cd00066 G-alpha G protein alph 98.6 1.5E-07 3.3E-12 86.3 8.4 127 191-318 162-313 (317)
389 COG5256 TEF1 Translation elong 98.6 1.4E-07 2.9E-12 86.7 7.8 98 201-306 96-201 (428)
390 KOG3886|consensus 98.6 7.3E-08 1.6E-12 81.6 5.5 104 204-320 72-182 (295)
391 PRK12289 GTPase RsgA; Reviewed 98.6 1.4E-07 3E-12 87.3 7.7 96 201-314 77-173 (352)
392 cd04155 Arl3 Arl3 subfamily. 98.6 1.5E-07 3.3E-12 78.2 7.1 55 2-60 13-67 (173)
393 cd01891 TypA_BipA TypA (tyrosi 98.6 2.3E-08 5.1E-13 85.1 2.0 122 4-184 3-129 (194)
394 cd01854 YjeQ_engC YjeQ/EngC. 98.5 2.3E-07 4.9E-12 83.9 7.9 88 208-313 73-161 (287)
395 PTZ00258 GTP-binding protein; 98.5 1.3E-07 2.8E-12 88.2 6.4 61 61-121 19-95 (390)
396 TIGR02528 EutP ethanolamine ut 98.5 2.5E-08 5.5E-13 80.2 1.3 31 4-36 1-31 (142)
397 COG5257 GCD11 Translation init 98.5 3.9E-07 8.5E-12 80.9 8.6 117 189-321 85-207 (415)
398 cd01859 MJ1464 MJ1464. This f 98.5 1.7E-07 3.8E-12 76.8 6.0 93 205-316 4-96 (156)
399 PTZ00099 rab6; Provisional 98.5 1.1E-07 2.4E-12 79.7 4.6 97 25-186 2-99 (176)
400 TIGR00450 mnmE_trmE_thdF tRNA 98.5 3.1E-07 6.7E-12 87.8 7.7 57 2-60 202-260 (442)
401 cd01875 RhoG RhoG subfamily. 98.5 7.1E-08 1.5E-12 82.0 2.4 41 61-101 1-41 (191)
402 PRK00007 elongation factor G; 98.5 2.1E-07 4.6E-12 94.1 6.0 66 192-261 77-142 (693)
403 PF04548 AIG1: AIG1 family; I 98.5 1.9E-07 4.1E-12 80.7 4.9 100 211-319 81-189 (212)
404 PRK12288 GTPase RsgA; Reviewed 98.5 5.1E-07 1.1E-11 83.5 8.0 90 210-314 117-206 (347)
405 KOG0070|consensus 98.5 1.8E-07 3.8E-12 76.8 4.2 116 2-185 16-131 (181)
406 PF05049 IIGP: Interferon-indu 98.4 4.2E-07 9.1E-12 84.0 6.7 61 61-121 33-96 (376)
407 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 1.4E-07 3E-12 79.6 2.6 42 61-102 3-44 (182)
408 cd01882 BMS1 Bms1. Bms1 is an 98.4 4.4E-07 9.5E-12 79.2 5.7 81 211-304 101-184 (225)
409 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.4 1.4E-07 3.1E-12 82.0 1.9 41 63-103 1-41 (222)
410 cd01897 NOG NOG1 is a nucleola 98.4 7E-07 1.5E-11 73.8 6.0 24 5-28 2-25 (168)
411 TIGR02836 spore_IV_A stage IV 98.4 2.6E-06 5.6E-11 79.0 9.7 82 213-311 144-232 (492)
412 cd04133 Rop_like Rop subfamily 98.4 1.9E-07 4.1E-12 78.3 2.2 38 64-101 2-39 (176)
413 cd01878 HflX HflX subfamily. 98.3 3.4E-07 7.4E-12 78.5 3.8 56 3-60 41-98 (204)
414 smart00275 G_alpha G protein a 98.3 9.9E-07 2.2E-11 81.6 7.0 128 189-317 183-335 (342)
415 PRK09435 membrane ATPase/prote 98.3 9.9E-07 2.1E-11 80.8 6.9 106 189-315 148-259 (332)
416 KOG0092|consensus 98.3 4.8E-07 1E-11 74.6 4.1 55 125-184 68-122 (200)
417 cd01874 Cdc42 Cdc42 subfamily. 98.3 2.4E-07 5.1E-12 77.6 2.3 38 64-101 2-39 (175)
418 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.3 3E-07 6.4E-12 80.4 2.5 40 62-101 12-51 (232)
419 KOG0073|consensus 98.3 7.4E-07 1.6E-11 71.5 4.3 116 2-185 15-130 (185)
420 KOG0098|consensus 98.3 3.1E-07 6.8E-12 75.2 2.0 59 125-188 69-127 (216)
421 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.3 2.8E-07 6.1E-12 76.9 1.8 39 63-101 2-40 (172)
422 cd01898 Obg Obg subfamily. Th 98.3 9E-07 1.9E-11 73.2 4.3 71 111-185 48-127 (170)
423 cd04171 SelB SelB subfamily. 98.3 1.2E-06 2.6E-11 71.8 4.8 35 111-145 51-85 (164)
424 KOG0080|consensus 98.2 4.6E-07 9.9E-12 72.4 2.0 59 125-188 74-133 (209)
425 TIGR03156 GTP_HflX GTP-binding 98.2 6E-07 1.3E-11 83.4 3.1 56 4-60 190-246 (351)
426 PTZ00369 Ras-like protein; Pro 98.2 3.7E-07 8.1E-12 77.3 1.6 40 61-100 3-42 (189)
427 PRK09601 GTP-binding protein Y 98.2 1.9E-06 4.2E-11 79.5 6.2 24 64-87 3-26 (364)
428 cd04164 trmE TrmE (MnmE, ThdF, 98.2 5.1E-06 1.1E-10 67.4 8.0 55 4-60 2-58 (157)
429 cd01858 NGP_1 NGP-1. Autoanti 98.2 4.1E-06 8.8E-11 68.8 7.3 90 210-315 5-94 (157)
430 KOG0075|consensus 98.2 6E-07 1.3E-11 70.7 2.1 117 2-185 19-135 (186)
431 KOG0394|consensus 98.2 2E-07 4.2E-12 76.2 -0.8 45 63-107 9-54 (210)
432 cd04128 Spg1 Spg1p. Spg1p (se 98.2 5.1E-07 1.1E-11 76.1 1.7 38 64-101 1-38 (182)
433 PLN00116 translation elongatio 98.2 2.7E-06 5.9E-11 87.8 7.1 63 193-259 101-163 (843)
434 cd00882 Ras_like_GTPase Ras-li 98.2 1.3E-06 2.8E-11 69.7 3.7 53 8-60 1-54 (157)
435 cd01892 Miro2 Miro2 subfamily. 98.2 7E-07 1.5E-11 74.2 2.2 117 62-185 3-121 (169)
436 KOG0078|consensus 98.2 1.3E-06 2.9E-11 73.2 3.6 48 61-108 10-58 (207)
437 KOG0461|consensus 98.2 7.9E-06 1.7E-10 73.3 8.5 124 185-322 65-199 (522)
438 cd01871 Rac1_like Rac1-like su 98.2 7.9E-07 1.7E-11 74.3 2.1 37 64-100 2-38 (174)
439 cd01879 FeoB Ferrous iron tran 98.2 2.2E-06 4.9E-11 69.8 4.7 51 8-60 1-52 (158)
440 PRK07560 elongation factor EF- 98.2 1.5E-06 3.3E-11 88.4 4.4 65 192-260 89-153 (731)
441 PRK05291 trmE tRNA modificatio 98.1 5.1E-06 1.1E-10 79.9 6.6 56 3-60 215-272 (449)
442 COG0378 HypB Ni2+-binding GTPa 98.1 7.2E-06 1.6E-10 68.3 6.4 80 216-315 120-200 (202)
443 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 7.2E-06 1.6E-10 66.0 6.2 77 210-303 8-84 (141)
444 cd04176 Rap2 Rap2 subgroup. T 98.1 1.1E-06 2.4E-11 72.2 1.5 37 63-99 1-37 (163)
445 PF00350 Dynamin_N: Dynamin fa 98.1 1.2E-06 2.6E-11 72.5 1.7 65 189-256 100-168 (168)
446 KOG1486|consensus 98.1 2.5E-05 5.3E-10 67.4 9.5 217 63-316 62-288 (364)
447 cd01850 CDC_Septin CDC/Septin. 98.1 1.2E-05 2.6E-10 72.3 8.0 58 3-60 4-72 (276)
448 cd01849 YlqF_related_GTPase Yl 98.1 1.3E-05 2.8E-10 65.7 7.4 83 215-314 1-83 (155)
449 PTZ00416 elongation factor 2; 98.1 2.1E-06 4.6E-11 88.4 3.3 65 191-259 93-157 (836)
450 KOG0071|consensus 98.1 4.1E-06 8.8E-11 65.5 4.0 96 2-162 16-111 (180)
451 cd01887 IF2_eIF5B IF2/eIF5B (i 98.1 5.1E-06 1.1E-10 68.4 5.0 56 5-60 2-59 (168)
452 TIGR00750 lao LAO/AO transport 98.1 1.3E-05 2.8E-10 73.1 7.9 90 211-315 145-237 (300)
453 KOG0458|consensus 98.1 4.2E-05 9.2E-10 73.2 11.2 96 201-307 266-373 (603)
454 COG2895 CysN GTPases - Sulfate 98.0 1.4E-05 3.1E-10 72.0 7.5 107 189-306 85-193 (431)
455 cd04163 Era Era subfamily. Er 98.0 1E-05 2.2E-10 66.0 6.2 28 1-28 1-28 (168)
456 cd04120 Rab12 Rab12 subfamily. 98.0 2E-06 4.4E-11 73.7 1.8 118 64-186 1-119 (202)
457 KOG0079|consensus 98.0 6.6E-07 1.4E-11 70.5 -1.1 47 64-121 9-55 (198)
458 cd04143 Rhes_like Rhes_like su 98.0 1.8E-06 4E-11 76.3 1.3 37 64-100 1-37 (247)
459 cd01856 YlqF YlqF. Proteins o 98.0 1.1E-05 2.4E-10 67.2 5.9 87 208-315 14-100 (171)
460 cd04121 Rab40 Rab40 subfamily. 98.0 2.8E-06 6E-11 72.1 2.3 119 62-186 5-124 (189)
461 PLN03071 GTP-binding nuclear p 98.0 2.7E-06 5.9E-11 73.9 2.0 41 60-100 10-50 (219)
462 PRK13796 GTPase YqeH; Provisio 98.0 2.2E-05 4.8E-10 73.4 8.1 81 215-314 71-157 (365)
463 PRK10463 hydrogenase nickel in 98.0 1.7E-05 3.8E-10 71.0 6.6 57 246-314 230-287 (290)
464 smart00053 DYNc Dynamin, GTPas 98.0 2.1E-05 4.5E-10 69.0 7.0 25 5-29 28-52 (240)
465 cd04103 Centaurin_gamma Centau 98.0 2.9E-06 6.4E-11 69.7 1.5 110 64-184 1-111 (158)
466 PF00735 Septin: Septin; Inte 97.9 7.3E-06 1.6E-10 73.7 4.0 59 63-121 4-73 (281)
467 cd01900 YchF YchF subfamily. 97.9 8.1E-06 1.7E-10 73.0 4.1 56 66-121 1-72 (274)
468 cd01873 RhoBTB RhoBTB subfamil 97.9 1.1E-05 2.4E-10 68.8 4.7 123 3-185 2-133 (195)
469 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 3.9E-06 8.4E-11 67.6 1.7 53 65-121 85-138 (141)
470 KOG0087|consensus 97.9 7E-06 1.5E-10 68.8 2.8 57 125-186 77-133 (222)
471 TIGR00993 3a0901s04IAP86 chlor 97.9 1.2E-05 2.5E-10 78.8 4.6 56 63-121 118-176 (763)
472 PRK04213 GTP-binding protein; 97.9 2.5E-05 5.5E-10 66.6 6.3 53 3-60 9-61 (201)
473 PTZ00132 GTP-binding nuclear p 97.9 5.2E-06 1.1E-10 71.8 2.0 43 58-100 4-46 (215)
474 TIGR00436 era GTP-binding prot 97.9 1.7E-05 3.8E-10 71.1 5.1 54 5-60 2-57 (270)
475 cd01881 Obg_like The Obg-like 97.9 6.7E-06 1.5E-10 68.2 2.2 21 8-28 1-21 (176)
476 TIGR00487 IF-2 translation ini 97.8 3E-05 6.6E-10 76.6 6.6 58 2-60 86-144 (587)
477 PRK00454 engB GTP-binding prot 97.8 3.9E-05 8.4E-10 65.0 6.5 56 3-60 24-79 (196)
478 smart00010 small_GTPase Small 97.8 4.1E-07 8.8E-12 71.1 -5.7 27 64-90 1-27 (124)
479 COG1217 TypA Predicted membran 97.8 0.00015 3.3E-09 67.7 10.2 107 195-319 73-198 (603)
480 TIGR03596 GTPase_YlqF ribosome 97.8 7.3E-05 1.6E-09 67.3 8.0 88 208-316 16-103 (276)
481 cd04102 RabL3 RabL3 (Rab-like3 97.8 8.5E-06 1.8E-10 69.8 1.9 118 64-186 1-143 (202)
482 TIGR03598 GTPase_YsxC ribosome 97.8 5E-05 1.1E-09 63.6 6.5 55 3-60 18-73 (179)
483 KOG0468|consensus 97.8 2.1E-05 4.5E-10 76.1 4.2 64 192-259 199-262 (971)
484 PRK11058 GTPase HflX; Provisio 97.7 3.4E-05 7.3E-10 73.5 4.9 56 4-60 198-254 (426)
485 KOG0091|consensus 97.7 3.9E-06 8.5E-11 67.3 -1.4 82 62-143 7-90 (213)
486 PRK15494 era GTPase Era; Provi 97.7 9E-05 2E-09 68.7 7.4 55 3-60 52-109 (339)
487 cd01895 EngA2 EngA2 subfamily. 97.7 0.0001 2.3E-09 60.5 7.1 57 2-60 1-59 (174)
488 PLN00023 GTP-binding protein; 97.7 1.4E-05 3.1E-10 72.5 1.8 49 59-107 17-66 (334)
489 cd04169 RF3 RF3 subfamily. Pe 97.7 0.00012 2.5E-09 65.6 7.4 73 105-186 65-137 (267)
490 KOG2486|consensus 97.7 6.5E-06 1.4E-10 71.9 -0.7 63 57-121 130-193 (320)
491 KOG1143|consensus 97.7 0.00061 1.3E-08 62.1 11.4 112 192-307 251-379 (591)
492 CHL00189 infB translation init 97.7 3.7E-05 8.1E-10 77.4 4.1 58 3-60 244-304 (742)
493 KOG0086|consensus 97.6 1.6E-05 3.4E-10 63.1 0.9 63 125-192 72-134 (214)
494 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.0002 4.3E-09 64.8 8.0 88 208-316 19-106 (287)
495 KOG0410|consensus 97.6 5.2E-06 1.1E-10 74.0 -2.3 82 211-316 255-341 (410)
496 COG3276 SelB Selenocysteine-sp 97.6 0.0002 4.4E-09 66.6 7.9 107 192-315 52-161 (447)
497 PRK05306 infB translation init 97.6 0.00012 2.5E-09 74.6 6.8 57 2-60 289-346 (787)
498 cd01899 Ygr210 Ygr210 subfamil 97.6 5.6E-05 1.2E-09 69.2 4.2 57 245-317 213-270 (318)
499 KOG3887|consensus 97.6 0.00035 7.7E-09 60.0 8.5 103 210-320 98-206 (347)
500 cd01859 MJ1464 MJ1464. This f 97.6 2.9E-05 6.3E-10 63.5 1.7 56 62-121 100-156 (156)
No 1
>KOG0084|consensus
Probab=100.00 E-value=2.4e-40 Score=269.57 Aligned_cols=165 Identities=30% Similarity=0.564 Sum_probs=144.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.|||+|+||+|||||||+.||..+.|+++|.+|++..| .+++.++++.+
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~i------------------------------ 58 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTI------------------------------ 58 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEE------------------------------
Confidence 58999999999999999999999999999999987555 45555555554
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++||||+||
T Consensus 59 ------------------------------KlQIWDTAGQ---------------------------------------- 68 (205)
T KOG0084|consen 59 ------------------------------KLQIWDTAGQ---------------------------------------- 68 (205)
T ss_pred ------------------------------EEEeeecccc----------------------------------------
Confidence 5556677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|||+++...+|++|+|+|+|||+|+.+||+++. .|+.++.
T Consensus 69 ---------------------------------------ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~-~Wi~Ei~ 108 (205)
T KOG0084|consen 69 ---------------------------------------ERFRTITSSYYRGAHGIIFVYDITKQESFNNVK-RWIQEID 108 (205)
T ss_pred ---------------------------------------HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHH-HHHHHhh
Confidence 777777888888999999999999999999999 8999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee-EEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK-YVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++. +++|.+|||||+|+.+. +.++.++++.|+.+++ ++ |+|+|||++.||+++|..+...+.++.
T Consensus 109 ~~~~~~v~~lLVGNK~Dl~~~------------~~v~~~~a~~fa~~~~-~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 109 RYASENVPKLLVGNKCDLTEK------------RVVSTEEAQEFADELG-IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred hhccCCCCeEEEeeccccHhh------------eecCHHHHHHHHHhcC-CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 987 57899999999999887 9999999999999998 56 999999999999999999999887553
Q ss_pred C
Q psy9997 320 E 320 (330)
Q Consensus 320 ~ 320 (330)
.
T Consensus 176 ~ 176 (205)
T KOG0084|consen 176 G 176 (205)
T ss_pred c
Confidence 3
No 2
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.5e-38 Score=269.68 Aligned_cols=191 Identities=63% Similarity=1.086 Sum_probs=158.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.||..+.|+++|.||+++.+.+.+.+++
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------------------------- 48 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDG-------------------------------- 48 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECC--------------------------------
Confidence 889999999999999999999999999999999998766654444443
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+.+++|||+|+
T Consensus 49 ----------------------------~~~~l~i~Dt~G~--------------------------------------- 61 (191)
T cd01875 49 ----------------------------RTVSLNLWDTAGQ--------------------------------------- 61 (191)
T ss_pred ----------------------------EEEEEEEEECCCc---------------------------------------
Confidence 3445566677777
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
++|..+++.+++++|++++|||++++.||+++...|+..+
T Consensus 62 ----------------------------------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i 101 (191)
T cd01875 62 ----------------------------------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEV 101 (191)
T ss_pred ----------------------------------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 7777778888899999999999999999999975699888
Q ss_pred hhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 241 THHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 241 ~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+..+++|++|||||+|+.......+.......+.++.++++++++.++.++|+|+||++|.||+++|+.+++.++.+..
T Consensus 102 ~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~~ 181 (191)
T cd01875 102 CHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181 (191)
T ss_pred HhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcccc
Confidence 87778899999999999976533333333334467889999999999986789999999999999999999999998766
Q ss_pred CCCCCCcccC
Q psy9997 321 PPKKRKCVLL 330 (330)
Q Consensus 321 ~~~~~~~~~~ 330 (330)
.+++.+|.||
T Consensus 182 ~~~~~~c~~~ 191 (191)
T cd01875 182 IKDTKSCVLL 191 (191)
T ss_pred ccCCCCceeC
Confidence 6666679986
No 3
>KOG0092|consensus
Probab=100.00 E-value=7.2e-38 Score=254.14 Aligned_cols=164 Identities=27% Similarity=0.524 Sum_probs=143.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
.++||+||||++||||||+.||..+.|.+...|||+..| ++++.+++..
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~------------------------------ 53 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNT------------------------------ 53 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcE------------------------------
Confidence 589999999999999999999999999988889987555 5566555444
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+++.||||+||
T Consensus 54 ------------------------------ikfeIWDTAGQ--------------------------------------- 64 (200)
T KOG0092|consen 54 ------------------------------IKFEIWDTAGQ--------------------------------------- 64 (200)
T ss_pred ------------------------------EEEEEEEcCCc---------------------------------------
Confidence 44556677777
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
|+|.++.++||++|+++|+|||+++.+||..+. .|+.++
T Consensus 65 ----------------------------------------ERy~slapMYyRgA~AAivvYDit~~~SF~~aK-~WvkeL 103 (200)
T KOG0092|consen 65 ----------------------------------------ERYHSLAPMYYRGANAAIVVYDITDEESFEKAK-NWVKEL 103 (200)
T ss_pred ----------------------------------------ccccccccceecCCcEEEEEEecccHHHHHHHH-HHHHHH
Confidence 777777888888899999999999999999999 999999
Q ss_pred hhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 241 THHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 241 ~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+.. +++.+.|||||+||... |++..+++..||+..+ ..|||+|||+|.||+++|..|.+.+.+.
T Consensus 104 ~~~~~~~~vialvGNK~DL~~~------------R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 104 QRQASPNIVIALVGNKADLLER------------REVEFEEAQAYAESQG-LLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred HhhCCCCeEEEEecchhhhhhc------------ccccHHHHHHHHHhcC-CEEEEEecccccCHHHHHHHHHHhccCc
Confidence 9887 46778889999999876 9999999999999998 6999999999999999999999999754
No 4
>KOG0078|consensus
Probab=100.00 E-value=7.4e-38 Score=258.82 Aligned_cols=163 Identities=31% Similarity=0.582 Sum_probs=145.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++||+||||||++.||.++.|...+.+|++-.| .+++.++++.+
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i------------------------------ 61 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKI------------------------------ 61 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEE------------------------------
Confidence 58999999999999999999999999999999997444 66666665444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+++|||+||
T Consensus 62 ------------------------------~lQiWDtaGQ---------------------------------------- 71 (207)
T KOG0078|consen 62 ------------------------------KLQIWDTAGQ---------------------------------------- 71 (207)
T ss_pred ------------------------------EEEEEEcccc----------------------------------------
Confidence 4555677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+.+...||+.|++++||||+++..||+++. .|+..|.
T Consensus 72 ---------------------------------------erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~-~W~~~I~ 111 (207)
T KOG0078|consen 72 ---------------------------------------ERFRTITTAYYRGAMGILLVYDITNEKSFENIR-NWIKNID 111 (207)
T ss_pred ---------------------------------------hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHH-HHHHHHH
Confidence 778888888999999999999999999999999 7999999
Q ss_pred hcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 242 HHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 242 ~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++.+ ++|+||||||+|+... |+|+.+.++++|.++| ++|+|+|||+|.||+++|..+.+.++++
T Consensus 112 e~a~~~v~~~LvGNK~D~~~~------------R~V~~e~ge~lA~e~G-~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 112 EHASDDVVKILVGNKCDLEEK------------RQVSKERGEALAREYG-IKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred hhCCCCCcEEEeecccccccc------------ccccHHHHHHHHHHhC-CeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 9985 8999999999999875 9999999999999998 7999999999999999999999999853
No 5
>KOG0098|consensus
Probab=100.00 E-value=1e-37 Score=251.11 Aligned_cols=163 Identities=27% Similarity=0.503 Sum_probs=143.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-+|++++||.|||||||+.||+.+.|.+.+..|++..| .+.+.++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id---------------------------------- 51 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID---------------------------------- 51 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc----------------------------------
Confidence 58999999999999999999999999888888876555 4444444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++++|+||||+||
T Consensus 52 --------------------------~k~IKlqiwDtaGq---------------------------------------- 65 (216)
T KOG0098|consen 52 --------------------------GKQIKLQIWDTAGQ---------------------------------------- 65 (216)
T ss_pred --------------------------CceEEEEEEecCCc----------------------------------------
Confidence 45555666688887
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+++++.||+.|.+++||||+++++||+.+. .|+.+++
T Consensus 66 ---------------------------------------e~frsv~~syYr~a~GalLVydit~r~sF~hL~-~wL~D~r 105 (216)
T KOG0098|consen 66 ---------------------------------------ESFRSVTRSYYRGAAGALLVYDITRRESFNHLT-SWLEDAR 105 (216)
T ss_pred ---------------------------------------HHHHHHHHHHhccCcceEEEEEccchhhHHHHH-HHHHHHH
Confidence 777788888889999999999999999999999 9999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++. ++..++|+|||+||... |.|+.||+++||++++ +.|+|+||+++.||+++|......|++.
T Consensus 106 q~~~~NmvImLiGNKsDL~~r------------R~Vs~EEGeaFA~ehg-LifmETSakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 106 QHSNENMVIMLIGNKSDLEAR------------REVSKEEGEAFAREHG-LIFMETSAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred HhcCCCcEEEEEcchhhhhcc------------ccccHHHHHHHHHHcC-ceeehhhhhhhhhHHHHHHHHHHHHHHH
Confidence 995 89999999999999876 9999999999999998 7899999999999999999998888754
No 6
>KOG0393|consensus
Probab=100.00 E-value=3.3e-36 Score=250.22 Aligned_cols=181 Identities=73% Similarity=1.227 Sum_probs=169.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+..+|+++||+.++|||+|+..|..+.|.+.|.||+.++|...+.++ ++.+.+.+|||+||
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGq------------------ 63 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQ------------------ 63 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCC------------------
Confidence 46799999999999999999999999999999999999999999995 99999999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
|.|..+++..|.++|++++
T Consensus 64 -------------------------------------------------------------edYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 64 -------------------------------------------------------------EDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred -------------------------------------------------------------cccccccccCCCCCCEEEE
Confidence 6676778888999999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++.+++||+++.+.|+.+++++++++|+||||+|.||..+....+++....+..++.++++.++++.|+..|+|+||+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~ 162 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL 162 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence 99999999999999999999999999999999999999997766666777778889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+..|+.++|+..++.++.+++
T Consensus 163 tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 163 TQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998875
No 7
>KOG0080|consensus
Probab=100.00 E-value=5.7e-37 Score=240.64 Aligned_cols=166 Identities=27% Similarity=0.528 Sum_probs=142.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++||+++|++|||||||+.||..+.|.+....||+..| .+...++
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd---------------------------------- 56 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD---------------------------------- 56 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc----------------------------------
Confidence 69999999999999999999999999888888887555 4444444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+++.||||+||
T Consensus 57 --------------------------g~~~KlaiWDTAGq---------------------------------------- 70 (209)
T KOG0080|consen 57 --------------------------GKRLKLAIWDTAGQ---------------------------------------- 70 (209)
T ss_pred --------------------------CceEEEEEEeccch----------------------------------------
Confidence 44455556688888
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+.+.+.||+.|.++|+|||+|.+++|..+. .|+.++.
T Consensus 71 ---------------------------------------ErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd-~W~~Eld 110 (209)
T KOG0080|consen 71 ---------------------------------------ERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLD-IWLKELD 110 (209)
T ss_pred ---------------------------------------HhhhccCHhHhccCceeEEEEEccchhhHHhHH-HHHHHHH
Confidence 666677777778888999999999999999997 9999998
Q ss_pred hcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
-+. +++..|+||||+|...+ |.|+.+|+.+||++++ +.|+|+||++.+||+.+|++++.+|++.+
T Consensus 111 ~Ystn~diikmlVgNKiDkes~------------R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 111 LYSTNPDIIKMLVGNKIDKESE------------RVVDREEGLKFARKHR-CLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhcCCccHhHhhhcccccchhc------------ccccHHHHHHHHHhhC-cEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 876 57788999999998655 9999999999999998 79999999999999999999999999876
Q ss_pred CC
Q psy9997 320 EP 321 (330)
Q Consensus 320 ~~ 321 (330)
.-
T Consensus 178 ~l 179 (209)
T KOG0080|consen 178 SL 179 (209)
T ss_pred ch
Confidence 54
No 8
>KOG0094|consensus
Probab=100.00 E-value=3.3e-37 Score=250.14 Aligned_cols=169 Identities=31% Similarity=0.542 Sum_probs=154.8
Q ss_pred ecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCC
Q psy9997 57 FARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135 (330)
Q Consensus 57 ~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~ 135 (330)
.+.+++..|++++|+.+||||||++||+.+.|...|.+|+|.+| .+++++.++++.|++|||+||
T Consensus 16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ-------------- 81 (221)
T KOG0094|consen 16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------------- 81 (221)
T ss_pred cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccH--------------
Confidence 34567779999999999999999999999999999999999888 669999999999999999999
Q ss_pred ceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCC
Q psy9997 136 DVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTD 215 (330)
Q Consensus 136 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d 215 (330)
|+|+++.+.|+++++
T Consensus 82 -----------------------------------------------------------------ERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 82 -----------------------------------------------------------------ERFRSLIPSYIRDSS 96 (221)
T ss_pred -----------------------------------------------------------------HHHhhhhhhhccCCe
Confidence 778888888899999
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcC-C-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHC-Q-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
++|+|||++|..||++.. +|++.++... + ++-++|||||.||.+. |+++.+|+...|+++++ .|
T Consensus 97 vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~dk------------rqvs~eEg~~kAkel~a-~f 162 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSDK------------RQVSIEEGERKAKELNA-EF 162 (221)
T ss_pred EEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccch------------hhhhHHHHHHHHHHhCc-EE
Confidence 999999999999999999 9999988765 3 5888999999999887 99999999999999995 99
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+|+||+.|+||.++|..+..++...
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999999988777654
No 9
>KOG0394|consensus
Probab=100.00 E-value=1.9e-36 Score=243.42 Aligned_cols=167 Identities=29% Similarity=0.541 Sum_probs=145.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++||+|||||||+.||.++.|...|..||+..| .+.+.++++.+
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~v------------------------------- 58 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSV------------------------------- 58 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEE-------------------------------
Confidence 8999999999999999999999999999999997555 65666554444
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.++||||+||
T Consensus 59 -----------------------------tlQiWDTAGQ----------------------------------------- 68 (210)
T KOG0394|consen 59 -----------------------------TLQIWDTAGQ----------------------------------------- 68 (210)
T ss_pred -----------------------------EEEEEecccH-----------------------------------------
Confidence 4555677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
|+|.++.-.+|+.||.++||||++++.||+++. .|..++..
T Consensus 69 --------------------------------------ERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~-~Wr~EFl~ 109 (210)
T KOG0394|consen 69 --------------------------------------ERFQSLGVAFYRGADCCVLVYDVNNPKSFENLE-NWRKEFLI 109 (210)
T ss_pred --------------------------------------HHhhhcccceecCCceEEEEeecCChhhhccHH-HHHHHHHH
Confidence 777788888899999999999999999999999 99999877
Q ss_pred cC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 243 HC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 243 ~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.. ...|+|++|||+|+....+ |+++.+.|++||...|.++|||+|||...||+++|+.+.+.+++
T Consensus 110 qa~~~~Pe~FPFVilGNKiD~~~~~~----------r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 110 QASPQDPETFPFVILGNKIDVDGGKS----------RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred hcCCCCCCcccEEEEcccccCCCCcc----------ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 65 2579999999999976422 89999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy9997 318 PPE 320 (330)
Q Consensus 318 ~~~ 320 (330)
.+.
T Consensus 180 ~E~ 182 (210)
T KOG0394|consen 180 NED 182 (210)
T ss_pred ccc
Confidence 764
No 10
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.3e-35 Score=250.59 Aligned_cols=177 Identities=43% Similarity=0.814 Sum_probs=146.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
..+||+++||+|||||||+.||..+.|.++|.||+++.+.+.+.+++.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~-------------------------------- 51 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQ-------------------------------- 51 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCE--------------------------------
Confidence 368999999999999999999999999999999987666544444433
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+.+++|||+|+
T Consensus 52 ----------------------------~~~l~iwDtaG~---------------------------------------- 63 (182)
T cd04172 52 ----------------------------RIELSLWDTSGS---------------------------------------- 63 (182)
T ss_pred ----------------------------EEEEEEEECCCc----------------------------------------
Confidence 345566677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
++|..+++.+++++|++++|||+++++||+++...|+.++.
T Consensus 64 ---------------------------------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~ 104 (182)
T cd04172 64 ---------------------------------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 104 (182)
T ss_pred ---------------------------------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 77777788889999999999999999999998448999999
Q ss_pred hcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC-HHHHHHHHHHHhcC
Q psy9997 242 HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG-LKNVFDEAILAALE 317 (330)
Q Consensus 242 ~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~i~~ 317 (330)
+..+++|++|||||+|+........++....++.++.++++++|+++++++|+|+||++|.| |+++|+.+++.++.
T Consensus 105 ~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 105 EFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred HHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 88889999999999999653222222223345679999999999999866899999999998 99999999997664
No 11
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.7e-36 Score=251.69 Aligned_cols=176 Identities=43% Similarity=0.788 Sum_probs=153.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||+++|.++.|...|.||++..+...+.+++..+.+++|||+|+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~--------------------- 59 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGS--------------------- 59 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 57999999999999999999999999999999999998888889999999999999999
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++|..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 60 ----------------------------------------------------------PYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred ----------------------------------------------------------hhhhhcchhhcCCCCEEEEEEE
Confidence 6666777788999999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++...|+.++.+..+++|++|||||+|+..+.....++....++.++.++++++++++++.+|+|+||++|.
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~ 161 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE 161 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence 99999999974489999998888999999999999965322222222233467999999999999986689999999999
Q ss_pred C-HHHHHHHHHHHhcC
Q psy9997 303 G-LKNVFDEAILAALE 317 (330)
Q Consensus 303 ~-v~~~f~~l~~~i~~ 317 (330)
| |+++|..+++..++
T Consensus 162 ~~v~~~F~~~~~~~~~ 177 (178)
T cd04131 162 KSVRDIFHVATMACLN 177 (178)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 5 99999999997663
No 12
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.4e-35 Score=255.18 Aligned_cols=178 Identities=41% Similarity=0.721 Sum_probs=146.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
..+||++|||+|||||||+.||..+.|.++|.||++..|...+.+++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~--------------------------------- 58 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEE--------------------------------- 58 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECC---------------------------------
Confidence 46899999999999999999999999999999998766654444433
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+.++||||+|+
T Consensus 59 ---------------------------~~v~l~iwDTaG~---------------------------------------- 71 (232)
T cd04174 59 ---------------------------QRVELSLWDTSGS---------------------------------------- 71 (232)
T ss_pred ---------------------------EEEEEEEEeCCCc----------------------------------------
Confidence 3445666677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
++|..+++.++++||++++|||+++++||+++...|+.++.
T Consensus 72 ---------------------------------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~ 112 (232)
T cd04174 72 ---------------------------------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIM 112 (232)
T ss_pred ---------------------------------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 77777778889999999999999999999986338999998
Q ss_pred hcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC-CHHHHHHHHHHHhcCC
Q psy9997 242 HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK-GLKNVFDEAILAALEP 318 (330)
Q Consensus 242 ~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~i~~~ 318 (330)
+..++.|++|||||+|+........++....++.++.+++++||+++++..|+|+||++|. ||+++|..++..+++.
T Consensus 113 ~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 113 DYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred HhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 8778899999999999965433233333334578999999999999985479999999997 8999999999988765
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.7e-35 Score=243.81 Aligned_cols=175 Identities=56% Similarity=1.007 Sum_probs=143.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.||..+.|..+|.||+++.+.+.+.+++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~----------------------------------- 46 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDG----------------------------------- 46 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECC-----------------------------------
Confidence 699999999999999999999999999999998766654444443
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..+.++||||+|+
T Consensus 47 -------------------------~~v~l~i~Dt~G~------------------------------------------ 59 (176)
T cd04133 47 -------------------------NTVNLGLWDTAGQ------------------------------------------ 59 (176)
T ss_pred -------------------------EEEEEEEEECCCC------------------------------------------
Confidence 3445666788777
Q ss_pred eeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc
Q psy9997 164 FISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~ 243 (330)
++|+.+++.++++++++++|||+++++||+++...|+.++.+.
T Consensus 60 -------------------------------------~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~ 102 (176)
T cd04133 60 -------------------------------------EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHY 102 (176)
T ss_pred -------------------------------------ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 6777777888999999999999999999999843899999887
Q ss_pred CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 244 CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 244 ~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+++|++|||||+|+.+..... ......+.++.++++++++.++...|+|+||++|.||+++|+.+++.+++++
T Consensus 103 ~~~~piilvgnK~Dl~~~~~~~--~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~~~ 176 (176)
T cd04133 103 APNVPIVLVGTKLDLRDDKQYL--ADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQPP 176 (176)
T ss_pred CCCCCEEEEEeChhhccChhhh--hhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhcCC
Confidence 7899999999999996531100 0112235689999999999998547999999999999999999999987754
No 14
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.3e-34 Score=249.36 Aligned_cols=177 Identities=40% Similarity=0.772 Sum_probs=146.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||++|||+|||||||+.+|..+.|+.+|.||++++|...+.+++..
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~-------------------------------- 48 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRR-------------------------------- 48 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEE--------------------------------
Confidence 479999999999999999999999999999999987776555554444
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.+.+|||+|+
T Consensus 49 ----------------------------v~L~iwDt~G~----------------------------------------- 59 (222)
T cd04173 49 ----------------------------IELNMWDTSGS----------------------------------------- 59 (222)
T ss_pred ----------------------------EEEEEEeCCCc-----------------------------------------
Confidence 44556677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
+.|..+++.+++++|++++|||+++++||+++...|..++..
T Consensus 60 --------------------------------------e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~ 101 (222)
T cd04173 60 --------------------------------------SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQE 101 (222)
T ss_pred --------------------------------------HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 777777888899999999999999999999996689988888
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC-HHHHHHHHHHHhcCC
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG-LKNVFDEAILAALEP 318 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-v~~~f~~l~~~i~~~ 318 (330)
..+++|++|||||+|+..+......+.......++.++++.++++.++.+|+|+||+++.| |+++|+.++++.+..
T Consensus 102 ~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 102 FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 7789999999999999764322222222334568999999999999977999999999985 999999999988864
No 15
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.4e-35 Score=248.29 Aligned_cols=188 Identities=45% Similarity=0.779 Sum_probs=161.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
.||+++|++|||||||+++|..+.|...+.||++..+...+.+++..+.+++|||+|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~---------------------- 58 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQ---------------------- 58 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCC----------------------
Confidence 3899999999999999999999999999999999888877888888899999999999
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.|..+++.+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 59 ---------------------------------------------------------EEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred ---------------------------------------------------------hhccccccccccCCCEEEEEEEC
Confidence 56666677788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
++++||+++...|+..+....++.|+++||||+|+...............+.+..+++..+++..+.++|+|+||++|.|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 161 (189)
T cd04134 82 DSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG 161 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence 99999999975699999887789999999999999765332222223334567889999999988867899999999999
Q ss_pred HHHHHHHHHHHhcCCC-CCCCCCCcccC
Q psy9997 304 LKNVFDEAILAALEPP-EPPKKRKCVLL 330 (330)
Q Consensus 304 v~~~f~~l~~~i~~~~-~~~~~~~~~~~ 330 (330)
++++|+++++.++.+. ..+.+.+|++|
T Consensus 162 v~e~f~~l~~~~~~~~~~~~~~~~~~~~ 189 (189)
T cd04134 162 VNEAFTEAARVALNVRPPHPHSSACTIA 189 (189)
T ss_pred HHHHHHHHHHHHhcccccCcCCCcceeC
Confidence 9999999999999876 44677899987
No 16
>KOG0079|consensus
Probab=100.00 E-value=7.2e-36 Score=231.27 Aligned_cols=161 Identities=30% Similarity=0.555 Sum_probs=142.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+|.++|||+|||||||++||..+.|..+|..|++-.+ .+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkir---------------------------------------- 48 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIR---------------------------------------- 48 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEE----------------------------------------
Confidence 6889999999999999999999999998888886444 33
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+++++|..+.|+||||+|+
T Consensus 49 --------------------Tv~i~G~~VkLqIwDtAGq----------------------------------------- 67 (198)
T KOG0079|consen 49 --------------------TVDINGDRVKLQIWDTAGQ----------------------------------------- 67 (198)
T ss_pred --------------------EeecCCcEEEEEEeecccH-----------------------------------------
Confidence 3445555666777788888
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
|+|+.+...+++..+++++|||+++.+||.++. .|+++++.
T Consensus 68 --------------------------------------ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~-rWLeei~~ 108 (198)
T KOG0079|consen 68 --------------------------------------ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVK-RWLEEIRN 108 (198)
T ss_pred --------------------------------------HHHHHHHHHHccCCceEEEEEECcchhhhHhHH-HHHHHHHh
Confidence 888888888999999999999999999999999 99999999
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++.+|-+|||||.|+.+- +.+..+++++||...+ +.+||+|||..+|++..|..+.+..++
T Consensus 109 ncdsv~~vLVGNK~d~~~R------------rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 109 NCDSVPKVLVGNKNDDPER------------RVVDTEDARAFALQMG-IELFETSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred cCccccceecccCCCCccc------------eeeehHHHHHHHHhcC-chheehhhhhcccchHHHHHHHHHHHH
Confidence 9999999999999999875 8899999999999998 899999999999999999998877764
No 17
>KOG0087|consensus
Probab=100.00 E-value=4.1e-35 Score=241.29 Aligned_cols=162 Identities=29% Similarity=0.511 Sum_probs=141.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
-|||+++||+|||||-|+.||..++|..+..+|++-.| .+++.++++.
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~------------------------------- 62 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKT------------------------------- 62 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcE-------------------------------
Confidence 48999999999999999999999999988888887444 4455555444
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+||||+||
T Consensus 63 -----------------------------vkaqIWDTAGQ---------------------------------------- 73 (222)
T KOG0087|consen 63 -----------------------------VKAQIWDTAGQ---------------------------------------- 73 (222)
T ss_pred -----------------------------EEEeeecccch----------------------------------------
Confidence 45555677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|+++.+.||+.|.+++||||++.+.+|+++. .|+.+++
T Consensus 74 ---------------------------------------ERyrAitSaYYrgAvGAllVYDITr~~Tfenv~-rWL~ELR 113 (222)
T KOG0087|consen 74 ---------------------------------------ERYRAITSAYYRGAVGALLVYDITRRQTFENVE-RWLKELR 113 (222)
T ss_pred ---------------------------------------hhhccccchhhcccceeEEEEechhHHHHHHHH-HHHHHHH
Confidence 777777888888889999999999999999998 9999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.|. ++++++|||||+||.+- |.|..+++..+|+..+ ..|+|+||.++.||+++|..++..|++
T Consensus 114 dhad~nivimLvGNK~DL~~l------------raV~te~~k~~Ae~~~-l~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 114 DHADSNIVIMLVGNKSDLNHL------------RAVPTEDGKAFAEKEG-LFFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred hcCCCCeEEEEeecchhhhhc------------cccchhhhHhHHHhcC-ceEEEecccccccHHHHHHHHHHHHHH
Confidence 998 79999999999999875 9999999999999988 799999999999999999999988874
No 18
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1e-33 Score=237.96 Aligned_cols=175 Identities=94% Similarity=1.431 Sum_probs=145.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||++||++|||||||+.||.++.|+++|.||+++.+...+.+++
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~---------------------------------- 46 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG---------------------------------- 46 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECC----------------------------------
Confidence 5899999999999999999999999998899998765544443333
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+.+++|||+|+
T Consensus 47 --------------------------~~~~l~i~Dt~G~----------------------------------------- 59 (175)
T cd01874 47 --------------------------EPYTLGLFDTAGQ----------------------------------------- 59 (175)
T ss_pred --------------------------EEEEEEEEECCCc-----------------------------------------
Confidence 3445666788777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
++|..++..+++++|++++|||+++++||+++.+.|+..+..
T Consensus 60 --------------------------------------~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~ 101 (175)
T cd01874 60 --------------------------------------EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 101 (175)
T ss_pred --------------------------------------cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 666677777889999999999999999999997569999988
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
..+++|+++||||+|+.......+.+.....+.++.++++++++..+.+.|+|+||++|.|++++|+.++++++
T Consensus 102 ~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~~ 175 (175)
T cd01874 102 HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175 (175)
T ss_pred hCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 77789999999999997654433444444558899999999999987678999999999999999999998653
No 19
>KOG0093|consensus
Probab=100.00 E-value=4.1e-35 Score=226.83 Aligned_cols=167 Identities=28% Similarity=0.516 Sum_probs=152.4
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|++++|++.||||||+.||....|...+..|+|..+. +++.-..+.+.++||||+|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagq------------------- 80 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQ------------------- 80 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccc-------------------
Confidence 3569999999999999999999999999999999999884 47777778888898888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
|+|+.+...++++|+++|||
T Consensus 81 ------------------------------------------------------------EryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 81 ------------------------------------------------------------ERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred ------------------------------------------------------------hhhhHHHHHHhhccceEEEE
Confidence 77777888889999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++|.+||..++ .|.-.++... .+.|+|+||||||+.++ |.++.|.++.++.++| ..|||+|||
T Consensus 101 yDitNeeSf~svq-dw~tqIktysw~naqvilvgnKCDmd~e------------Rvis~e~g~~l~~~LG-fefFEtSaK 166 (193)
T KOG0093|consen 101 YDITNEESFNSVQ-DWITQIKTYSWDNAQVILVGNKCDMDSE------------RVISHERGRQLADQLG-FEFFETSAK 166 (193)
T ss_pred EecCCHHHHHHHH-HHHHHheeeeccCceEEEEecccCCccc------------eeeeHHHHHHHHHHhC-hHHhhhccc
Confidence 9999999999998 8999998876 79999999999999887 9999999999999999 799999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.+.||+++|+.++..|-+..+.
T Consensus 167 ~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred ccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998776554
No 20
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.6e-33 Score=239.04 Aligned_cols=104 Identities=19% Similarity=0.360 Sum_probs=95.1
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
++|..+++.+++++|++++|||++++.||+++. .|++++..+.+++|++|||||+|+... +.++.++
T Consensus 66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~------------~~v~~~~ 132 (189)
T cd04121 66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFK------------RQVATEQ 132 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhc------------cCCCHHH
Confidence 667777778889999999999999999999998 899999888789999999999999764 7899999
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++++.++ ++|+|+||++|.||+++|+++++.++..
T Consensus 133 ~~~~a~~~~-~~~~e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 133 AQAYAERNG-MTFFEVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999987 7999999999999999999999988743
No 21
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.8e-34 Score=240.73 Aligned_cols=180 Identities=53% Similarity=0.940 Sum_probs=156.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|..+.|...+.||++..+...+... +..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~--------------------- 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ--------------------- 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc---------------------
Confidence 58999999999999999999999999999999998887777765 77888999999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~ad~ii~v~d 81 (187)
T cd04132 60 ----------------------------------------------------------EEYDRLRPLSYPDVDVLLICYA 81 (187)
T ss_pred ----------------------------------------------------------hhHHHHHHHhCCCCCEEEEEEE
Confidence 6666667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++...|+..+....+++|+++||||+|+.... ...+.+..+++++++..++..+++++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 82 VDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK--------NLDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc--------cccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 9999999999757998887777789999999999996531 12256888999999999985589999999999
Q ss_pred CHHHHHHHHHHHhcCCC------CCCCCCCcccC
Q psy9997 303 GLKNVFDEAILAALEPP------EPPKKRKCVLL 330 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~------~~~~~~~~~~~ 330 (330)
|++++|..+++.+++.. ..+++++|+||
T Consensus 154 ~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 154 NVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 99999999999998765 56788999997
No 22
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=8.6e-33 Score=236.74 Aligned_cols=105 Identities=23% Similarity=0.503 Sum_probs=93.3
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
++|..+++.++++||++++|||+++++||+++. .|+..+.+.. .++|+++||||+|+... +++..+
T Consensus 60 e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~------------~~v~~~ 126 (202)
T cd04120 60 ERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REISRQ 126 (202)
T ss_pred hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHH
Confidence 777777788899999999999999999999998 8999887764 57999999999999754 889999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++++++...+.|+|+||++|.||+++|++++..+.+.
T Consensus 127 ~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 127 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999886447899999999999999999999988754
No 23
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1e-33 Score=241.14 Aligned_cols=173 Identities=36% Similarity=0.602 Sum_probs=151.2
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|..+.|...+.||+++.+...+.+++..+.+++|||+|+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------------- 57 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ----------------------- 57 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCc-----------------------
Confidence 689999999999999999999999999999999888777888888899999999998
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
++|..++..+++.+|++++|||++
T Consensus 58 --------------------------------------------------------~~~~~~~~~~~~~ad~~ilv~d~~ 81 (190)
T cd04144 58 --------------------------------------------------------EEYTALRDQWIREGEGFILVYSIT 81 (190)
T ss_pred --------------------------------------------------------hhhHHHHHHHHHhCCEEEEEEECC
Confidence 566666777888999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 225 SPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+++||+++. .|+..+.... .++|+++||||+|+... +.+..+++..+++.++ ++|+++||++
T Consensus 82 ~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~SAk~ 147 (190)
T cd04144 82 SRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVYE------------REVSTEEGAALARRLG-CEFIEASAKT 147 (190)
T ss_pred CHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEecCCC
Confidence 999999998 8988876643 47899999999999764 7788888999999888 6899999999
Q ss_pred CCCHHHHHHHHHHHhcCCCC-------------CCCCCCcccC
Q psy9997 301 QKGLKNVFDEAILAALEPPE-------------PPKKRKCVLL 330 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~-------------~~~~~~~~~~ 330 (330)
|.|++++|+.+++++.++.. .+++++||||
T Consensus 148 ~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 148 NVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99999999999998874322 2467899987
No 24
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.8e-32 Score=228.94 Aligned_cols=173 Identities=73% Similarity=1.240 Sum_probs=142.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|++|||||||+.||.++.|..+|.||+++.+...+.++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~----------------------------------- 45 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD----------------------------------- 45 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEEC-----------------------------------
Confidence 379999999999999999999999999999999865554443333
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+..+.+++|||+|+
T Consensus 46 -------------------------~~~~~l~i~Dt~G~----------------------------------------- 59 (174)
T cd01871 46 -------------------------GKPVNLGLWDTAGQ----------------------------------------- 59 (174)
T ss_pred -------------------------CEEEEEEEEECCCc-----------------------------------------
Confidence 33445667788777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
+.|..+++.+++++|++|+|||+++++||+++...|+..+..
T Consensus 60 --------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~ 101 (174)
T cd01871 60 --------------------------------------EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 101 (174)
T ss_pred --------------------------------------hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 666667777889999999999999999999996579988887
Q ss_pred cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 243 HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 243 ~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..+++|+++||||+|+.......+.......+.++.++++++++.++.+.|+|+||++|.|++++|+.+++.
T Consensus 102 ~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 102 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 777899999999999965433333333344578999999999999986699999999999999999999864
No 25
>KOG0088|consensus
Probab=100.00 E-value=1.2e-33 Score=221.34 Aligned_cols=166 Identities=30% Similarity=0.546 Sum_probs=141.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.||++++|++.||||||+.||+.+.|.....+|+...| .+.+.+.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e---------------------------------- 58 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE---------------------------------- 58 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc----------------------------------
Confidence 58999999999999999999999999999999985444 3333333
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+....+.||||+||
T Consensus 59 --------------------------d~ra~L~IWDTAGQ---------------------------------------- 72 (218)
T KOG0088|consen 59 --------------------------DCRADLHIWDTAGQ---------------------------------------- 72 (218)
T ss_pred --------------------------cceeeeeeeeccch----------------------------------------
Confidence 34445666677777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
|+|.++-+.||+.+++++||||++|++||+.+. .|..+++
T Consensus 73 ---------------------------------------ErfHALGPIYYRgSnGalLVyDITDrdSFqKVK-nWV~Elr 112 (218)
T KOG0088|consen 73 ---------------------------------------ERFHALGPIYYRGSNGALLVYDITDRDSFQKVK-NWVLELR 112 (218)
T ss_pred ---------------------------------------HhhhccCceEEeCCCceEEEEeccchHHHHHHH-HHHHHHH
Confidence 666677777788888889999999999999999 9999999
Q ss_pred hcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 242 HHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 242 ~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
... ..+.+++||||+|+.++ |+|+.++++++++.-| ..|+|+||+.+.|+.++|+.+...++++-+
T Consensus 113 ~mlGnei~l~IVGNKiDLEee------------R~Vt~qeAe~YAesvG-A~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 113 TMLGNEIELLIVGNKIDLEEE------------RQVTRQEAEAYAESVG-ALYMETSAKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred HHhCCeeEEEEecCcccHHHh------------hhhhHHHHHHHHHhhc-hhheecccccccCHHHHHHHHHHHHHHHhh
Confidence 976 56889999999999876 9999999999999999 489999999999999999999999997654
Q ss_pred C
Q psy9997 321 P 321 (330)
Q Consensus 321 ~ 321 (330)
.
T Consensus 180 ~ 180 (218)
T KOG0088|consen 180 Q 180 (218)
T ss_pred h
Confidence 3
No 26
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.1e-32 Score=230.58 Aligned_cols=107 Identities=43% Similarity=0.718 Sum_probs=87.3
Q ss_pred cCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH-----H--hhhCCCCCcCHH
Q psy9997 207 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE-----K--LAKNKQKPISFE 279 (330)
Q Consensus 207 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~-----~--~~~~~~~~v~~~ 279 (330)
++.+++++|++++|||++++.||+++...|+.++....+++|+++||||+|+........ . .....++.++.+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 455788999999999999999999997469999988777899999999999964210000 0 000124889999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+++++++.++ ++|+|+||++|.||+++|+.++++
T Consensus 161 e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 161 TGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9999999998 599999999999999999999875
No 27
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.1e-32 Score=226.08 Aligned_cols=167 Identities=28% Similarity=0.516 Sum_probs=140.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.||..+.|+..+.||+++.+...+.++
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~---------------------------------- 46 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARID---------------------------------- 46 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEEC----------------------------------
Confidence 4689999999999999999999999998888888865554444433
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+..+.+++|||+|+
T Consensus 47 --------------------------~~~~~l~i~Dt~G~---------------------------------------- 60 (172)
T cd04141 47 --------------------------NEPALLDILDTAGQ---------------------------------------- 60 (172)
T ss_pred --------------------------CEEEEEEEEeCCCc----------------------------------------
Confidence 33445566777777
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~ 241 (330)
+++..++..+++.+|++++|||++++.||+++. .|...+.
T Consensus 61 ---------------------------------------~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~-~~~~~i~ 100 (172)
T cd04141 61 ---------------------------------------AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEAS-EFKKLIT 100 (172)
T ss_pred ---------------------------------------hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHH-HHHHHHH
Confidence 666677777888999999999999999999998 7888777
Q ss_pred hcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 242 HHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 242 ~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+.. .++|+++||||+|+... +.++.++++++++.++ ++|+|+||++|.||+++|+++++.+.+..
T Consensus 101 ~~~~~~~~piilvgNK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 101 RVRLTEDIPLVLVGNKVDLESQ------------RQVTTEEGRNLAREFN-CPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred HhcCCCCCCEEEEEEChhhhhc------------CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 642 57999999999999754 7889999999999887 69999999999999999999999988755
Q ss_pred CC
Q psy9997 320 EP 321 (330)
Q Consensus 320 ~~ 321 (330)
.+
T Consensus 168 ~~ 169 (172)
T cd04141 168 SM 169 (172)
T ss_pred cC
Confidence 44
No 28
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=2.5e-32 Score=228.90 Aligned_cols=174 Identities=71% Similarity=1.202 Sum_probs=153.4
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
|+++|++|||||||+++|..+.|...+.|+.+..+...+.+++..+.+.+|||+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------------ 56 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQ------------------------ 56 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCC------------------------
Confidence 58999999999999999999999999999999888888888898899999999998
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~ 225 (330)
+.|..+++.+++++|++++|||+++
T Consensus 57 -------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 57 -------------------------------------------------------EDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred -------------------------------------------------------cccchhchhhcCCCCEEEEEEECCC
Confidence 5566677778889999999999999
Q ss_pred hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHH
Q psy9997 226 PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305 (330)
Q Consensus 226 ~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 305 (330)
++||+++...|+..+....+++|+++||||+|+..+............+.++.+++.++++.++...|+|+||++|.|++
T Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 161 (174)
T smart00174 82 PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVR 161 (174)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHH
Confidence 99999997579999988878999999999999976544444444555677999999999999986689999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy9997 306 NVFDEAILAALEP 318 (330)
Q Consensus 306 ~~f~~l~~~i~~~ 318 (330)
++|+.+++.++++
T Consensus 162 ~lf~~l~~~~~~~ 174 (174)
T smart00174 162 EVFEEAIRAALNP 174 (174)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988753
No 29
>KOG0091|consensus
Probab=99.98 E-value=1.3e-32 Score=216.70 Aligned_cols=103 Identities=28% Similarity=0.466 Sum_probs=91.7
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--C-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--Q-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~ 277 (330)
|+|+++...||+++-++++|||++|++||+.+. .|+.+...+. + ++.+.|||+|+|+... |+|+
T Consensus 69 erfrsitksyyrnsvgvllvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq------------RqVt 135 (213)
T KOG0091|consen 69 ERFRSITKSYYRNSVGVLLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQSQ------------RQVT 135 (213)
T ss_pred HHHHHHHHHHhhcccceEEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchhhh------------cccc
Confidence 777788888888899999999999999999999 9999876654 2 4567899999999876 9999
Q ss_pred HHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 278 FEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 278 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.||++.|+..+| ..|+|+||++|.||+++|.-+.+.+..
T Consensus 136 ~EEaEklAa~hg-M~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 136 AEEAEKLAASHG-MAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHhcC-ceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 999999999999 699999999999999999988887763
No 30
>KOG0095|consensus
Probab=99.98 E-value=7e-33 Score=215.04 Aligned_cols=162 Identities=27% Similarity=0.510 Sum_probs=148.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-+||+++|+.|||||||++||.++-|++-...|+|..+. +++++++..++++||||+||
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagq-------------------- 66 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ-------------------- 66 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccch--------------------
Confidence 479999999999999999999999999999999998884 69999999999999999999
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
|+|+++...||+.|+++||+|
T Consensus 67 -----------------------------------------------------------erfrsitqsyyrsahalilvy 87 (213)
T KOG0095|consen 67 -----------------------------------------------------------ERFRSITQSYYRSAHALILVY 87 (213)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhhhcceEEEEE
Confidence 777778888888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++...||+-+. .|+.++.++. .++-.|+||||+|+.+. |+++...++.|++... ..|+|+||+.
T Consensus 88 discqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~dr------------revp~qigeefs~~qd-myfletsake 153 (213)
T KOG0095|consen 88 DISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADR------------REVPQQIGEEFSEAQD-MYFLETSAKE 153 (213)
T ss_pred ecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhh------------hhhhHHHHHHHHHhhh-hhhhhhcccc
Confidence 999999999999 8999999987 46778999999999876 8999999999999976 6899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
..||+++|..+.-.++.
T Consensus 154 a~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 154 ADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999999887763
No 31
>KOG0083|consensus
Probab=99.98 E-value=5.3e-33 Score=211.78 Aligned_cols=159 Identities=26% Similarity=0.515 Sum_probs=144.0
Q ss_pred EEeecCCCceeEEEEeeccCCC-CCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 67 VVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 67 ~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
+++|++++|||||+-||..+.| ...+.+|+|..|. +.+++++..+.+++|||+||
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq----------------------- 57 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ----------------------- 57 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccch-----------------------
Confidence 4789999999999999998887 5677889999885 48889999999999999999
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
|+|++....||++||+.+++||++
T Consensus 58 --------------------------------------------------------erfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 58 --------------------------------------------------------ERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred --------------------------------------------------------HHHhhhhHhhhcccceeeeeeecc
Confidence 667777777888899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 225 SPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
|..||++++ .|+.+|.++. ..+.++++|||+|+.++ |.+..++++.+++.++ +||+|+||++|.|
T Consensus 82 nkasfdn~~-~wlsei~ey~k~~v~l~llgnk~d~a~e------------r~v~~ddg~kla~~y~-ipfmetsaktg~n 147 (192)
T KOG0083|consen 82 NKASFDNCQ-AWLSEIHEYAKEAVALMLLGNKCDLAHE------------RAVKRDDGEKLAEAYG-IPFMETSAKTGFN 147 (192)
T ss_pred cchhHHHHH-HHHHHHHHHHHhhHhHhhhccccccchh------------hccccchHHHHHHHHC-CCceecccccccc
Confidence 999999998 9999999887 57899999999999887 9999999999999998 8999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q psy9997 304 LKNVFDEAILAALEP 318 (330)
Q Consensus 304 v~~~f~~l~~~i~~~ 318 (330)
|+.+|..+...+.+.
T Consensus 148 vd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKL 162 (192)
T ss_pred HhHHHHHHHHHHHHh
Confidence 999999999888754
No 32
>KOG0086|consensus
Probab=99.98 E-value=2.3e-32 Score=212.98 Aligned_cols=162 Identities=26% Similarity=0.498 Sum_probs=140.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
||++++|.+|.|||||+.+|..+.|.+...-|++..| ++.+.++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVG----------------------------------- 54 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVG----------------------------------- 54 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeec-----------------------------------
Confidence 7999999999999999999999999887777776544 4444444
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
++.++++||||+||
T Consensus 55 -------------------------gK~vKLQIWDTAGQ----------------------------------------- 68 (214)
T KOG0086|consen 55 -------------------------GKTVKLQIWDTAGQ----------------------------------------- 68 (214)
T ss_pred -------------------------CcEEEEEEeecccH-----------------------------------------
Confidence 44455666688888
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
|+|++..+.||+.|.+.+||||+++++||+.+. .|+..++-
T Consensus 69 --------------------------------------ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLt-nWL~DaR~ 109 (214)
T KOG0086|consen 69 --------------------------------------ERFRSVTRSYYRGAAGALLVYDITSRDSFNALT-NWLTDART 109 (214)
T ss_pred --------------------------------------HHHHHHHHHHhccccceEEEEeccchhhHHHHH-HHHHHHHh
Confidence 777777777888888999999999999999999 99999988
Q ss_pred cC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 243 HC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 243 ~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.. +++.++++|||.|+..+ |+++..|+..|+++.. +.+.|+||++|+||+++|....+.|+.+
T Consensus 110 lAs~nIvviL~GnKkDL~~~------------R~VtflEAs~FaqEne-l~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 110 LASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred hCCCcEEEEEeCChhhcChh------------hhhhHHHHHhhhcccc-eeeeeecccccccHHHHHHHHHHHHHHH
Confidence 76 68899999999999876 9999999999999987 7999999999999999999999998854
No 33
>KOG0081|consensus
Probab=99.97 E-value=1.6e-32 Score=215.27 Aligned_cols=172 Identities=28% Similarity=0.476 Sum_probs=142.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-+|.+.+|++||||||++.+|..++|...+..|+|.++.. .+..+.. |-..
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~----------gp~g------------------ 60 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSS----------GPGG------------------ 60 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEecc----------CCCC------------------
Confidence 3678899999999999999999999999999999888854 3332210 0000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
-..+.++-+++|||+|||+|+++...++++|-+++|+|
T Consensus 61 ------------------------------------------~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiF 98 (219)
T KOG0081|consen 61 ------------------------------------------GGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIF 98 (219)
T ss_pred ------------------------------------------CCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEE
Confidence 00122344556666666999999999999999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+++.+||-++. .|++++.-+. +++-++++|||+|+... |.|+.+++.+++.+++ +||||+||.
T Consensus 99 DlT~eqSFLnvr-nWlSQL~~hAYcE~PDivlcGNK~DL~~~------------R~Vs~~qa~~La~kyg-lPYfETSA~ 164 (219)
T KOG0081|consen 99 DLTSEQSFLNVR-NWLSQLQTHAYCENPDIVLCGNKADLEDQ------------RVVSEDQAAALADKYG-LPYFETSAC 164 (219)
T ss_pred eccchHHHHHHH-HHHHHHHHhhccCCCCEEEEcCccchhhh------------hhhhHHHHHHHHHHhC-CCeeeeccc
Confidence 999999999999 9999998775 78999999999999765 9999999999999999 899999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.||++..+.++..+++.
T Consensus 165 tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999998888777643
No 34
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=2.1e-31 Score=223.37 Aligned_cols=172 Identities=61% Similarity=1.069 Sum_probs=149.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|++++|++|+|||||+++|..+.|..++.||..+.+...+.+++..+.+++|||+|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 58 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ---------------------- 58 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCC----------------------
Confidence 5899999999999999999999999999999998888778888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..+++.+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~a~~~i~v~d~ 81 (173)
T cd04130 59 ---------------------------------------------------------DEFDKLRPLCYPDTDVFLLCFSV 81 (173)
T ss_pred ---------------------------------------------------------hhhccccccccCCCcEEEEEEEC
Confidence 56666777788999999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
+++++|+++.+.|+..+....++.|+++||||+|+..............++.+..++++.+++..+...|+|+||++|.|
T Consensus 82 ~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~ 161 (173)
T cd04130 82 VNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKN 161 (173)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 99999999865799888876678999999999999764333333444456889999999999999866899999999999
Q ss_pred HHHHHHHHHHH
Q psy9997 304 LKNVFDEAILA 314 (330)
Q Consensus 304 v~~~f~~l~~~ 314 (330)
++++|+.++.+
T Consensus 162 v~~lf~~~~~~ 172 (173)
T cd04130 162 LKEVFDTAILA 172 (173)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.3e-31 Score=230.10 Aligned_cols=163 Identities=26% Similarity=0.413 Sum_probs=143.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|.++.|...+.||++..+. ..+.++ +..+.+.+|||+|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~-------------------- 60 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ-------------------- 60 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--------------------
Confidence 58999999999999999999999999999999987764 467777 78888999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..+++.++++++++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~a~~~ilv~ 81 (201)
T cd04107 61 -----------------------------------------------------------ERFGGMTRVYYRGAVGAIIVF 81 (201)
T ss_pred -----------------------------------------------------------hhhhhhHHHHhCCCCEEEEEE
Confidence 666677777889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc-----CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH-----CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~-----~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
|+++++||+.+. .|+..+... ..++|+++||||+|+... +.+..+++.++++.++...|+|+
T Consensus 82 D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~ 148 (201)
T cd04107 82 DVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKCDLKKR------------LAKDGEQMDQFCKENGFIGWFET 148 (201)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcCCceEEEE
Confidence 999999999998 898887653 257899999999999754 67888999999999886689999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+++++.+++.
T Consensus 149 Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 149 SAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
No 36
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.5e-31 Score=222.66 Aligned_cols=162 Identities=25% Similarity=0.514 Sum_probs=144.4
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||+++|..++|...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------------------- 61 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ-------------------- 61 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 479999999999999999999999999999999988775 46788888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++...+..+++++|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 62 -----------------------------------------------------------ERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhcCCCEEEEEE
Confidence 666666677888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++++||+.+. .|+..+.... ++.|+++||||+|+..+ +.++.+++..+++..+ ++|+|+||++
T Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 148 (166)
T cd04122 83 DITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ------------RDVTYEEAKQFADENG-LLFLECSAKT 148 (166)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999998 8998886654 57899999999999765 7788899999999887 7999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|..+++.+++
T Consensus 149 ~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 149 GENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988865
No 37
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=4.9e-31 Score=221.05 Aligned_cols=174 Identities=72% Similarity=1.207 Sum_probs=152.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||+++|..+.|...+.||.++.+...+.+++..+.+.+|||+|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 58 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ---------------------- 58 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 5899999999999999999999999999999998888778888888888999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.|...+..+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~~~ 81 (174)
T cd04135 59 ---------------------------------------------------------EDYDRLRPLSYPMTDVFLICFSV 81 (174)
T ss_pred ---------------------------------------------------------ccccccccccCCCCCEEEEEEEC
Confidence 55556667778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
+++++|+++.+.|+..+....++.|+++||||+|+...............+.++.++++.+++..+...|+|+||++|.|
T Consensus 82 ~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 161 (174)
T cd04135 82 VNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKG 161 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCC
Confidence 99999999976799888877788999999999999765444444555556789999999999999866899999999999
Q ss_pred HHHHHHHHHHHhc
Q psy9997 304 LKNVFDEAILAAL 316 (330)
Q Consensus 304 v~~~f~~l~~~i~ 316 (330)
++++|+.++.+++
T Consensus 162 i~~~f~~~~~~~~ 174 (174)
T cd04135 162 LKTVFDEAILAIL 174 (174)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998864
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=4.2e-31 Score=229.35 Aligned_cols=161 Identities=24% Similarity=0.375 Sum_probs=141.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECC-ceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGG-EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|.++.|...|.||++.++ ...+.+++ ..+.+++|||+|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~-------------------- 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ-------------------- 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc--------------------
Confidence 5899999999999999999999999999999998655 45677754 5788899999888
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+..++..+++++|++++||
T Consensus 61 -----------------------------------------------------------~~~~~l~~~~~~~ad~iilV~ 81 (215)
T cd04109 61 -----------------------------------------------------------SIGGKMLDKYIYGAHAVFLVY 81 (215)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhhcCCEEEEEE
Confidence 556666677788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
|+++++||+++. .|+..+.+.. .++|+++||||+|+... +.++.+++.++++.++ .+++++|
T Consensus 82 D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~------------~~v~~~~~~~~~~~~~-~~~~~iS 147 (215)
T cd04109 82 DVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHN------------RTVKDDKHARFAQANG-MESCLVS 147 (215)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEE
Confidence 999999999998 8999988764 35789999999999754 7889999999999988 6899999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.++..+..
T Consensus 148 Aktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 148 AKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 39
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=3.4e-30 Score=217.77 Aligned_cols=169 Identities=27% Similarity=0.504 Sum_probs=134.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||..+.|.++|.||++.++ .+.+.+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~---------------------------------- 46 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRG---------------------------------- 46 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC----------------------------------
Confidence 6999999999999999999999999998999986444 33444443
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+.+++|||+|+
T Consensus 47 --------------------------~~~~l~iwDt~G~----------------------------------------- 59 (182)
T cd04128 47 --------------------------TEITFSIWDLGGQ----------------------------------------- 59 (182)
T ss_pred --------------------------EEEEEEEEeCCCc-----------------------------------------
Confidence 3445666677777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
++|..+++.++++||++++|||+++++||+++. .|+..+.+
T Consensus 60 --------------------------------------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~-~~~~~~~~ 100 (182)
T cd04128 60 --------------------------------------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIK-EWYRQARG 100 (182)
T ss_pred --------------------------------------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHH-HHHHHHHH
Confidence 666667777889999999999999999999998 89999887
Q ss_pred cCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 243 HCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 243 ~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
..+ ..| ++||||+|+..+.. ...+....++++.+++.++ .+++++||++|.|++++|+++++.+++.+..
T Consensus 101 ~~~~~~p-ilVgnK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~~ 171 (182)
T cd04128 101 FNKTAIP-ILVGTKYDLFADLP-------PEEQEEITKQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFDLPLT 171 (182)
T ss_pred hCCCCCE-EEEEEchhcccccc-------chhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 654 456 78999999964210 0012223478889999988 6999999999999999999999999875543
No 40
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=219.36 Aligned_cols=165 Identities=33% Similarity=0.542 Sum_probs=138.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.||..+.|...+.||++..+.+.+.++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~--------------------------------- 49 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVID--------------------------------- 49 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEEC---------------------------------
Confidence 67899999999999999999999999998888888765554444333
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+..+.+++|||+|+
T Consensus 50 ---------------------------~~~~~l~i~Dt~G~--------------------------------------- 63 (189)
T PTZ00369 50 ---------------------------EETCLLDILDTAGQ--------------------------------------- 63 (189)
T ss_pred ---------------------------CEEEEEEEEeCCCC---------------------------------------
Confidence 33445666788887
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.|..++..+++.+|++++|||++++++|+++. .|+..+
T Consensus 64 ----------------------------------------~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~-~~~~~i 102 (189)
T PTZ00369 64 ----------------------------------------EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIA-SFREQI 102 (189)
T ss_pred ----------------------------------------ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHH-HHHHHH
Confidence 566666777888999999999999999999998 898888
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+.. .++|+++|+||+|+... +.+..+++..+++.++ .+|+++||++|.|++++|.++++.+.+.
T Consensus 103 ~~~~~~~~~piiiv~nK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 103 LRVKDKDRVPMILVGNKCDLDSE------------RQVSTGEGQELAKSFG-IPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred HHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 7653 48899999999999654 6778888999999887 6999999999999999999999888754
No 41
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=4.3e-31 Score=218.74 Aligned_cols=160 Identities=29% Similarity=0.547 Sum_probs=142.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||++++..+.|...+.||+++.+...+.+++..+.+++|||+|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--------------------- 59 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 37999999999999999999999999999999998888888888998999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++|..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 60 ----------------------------------------------------------EQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred ----------------------------------------------------------cccchHHHHHhhcCCEEEEEEE
Confidence 5666667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+++. .|+..+.... .+.|+++|+||+|+... +.+..+++..+++.++ .+|+++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (163)
T cd04136 82 ITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDE------------RVVSREEGQALARQWG-CPFYETSAKS 147 (163)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceecHHHHHHHHHHcC-CeEEEecCCC
Confidence 99999999998 7888887653 57999999999999754 6678888889999887 7999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|++++..+
T Consensus 148 ~~~v~~l~~~l~~~~ 162 (163)
T cd04136 148 KINVDEVFADLVRQI 162 (163)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998765
No 42
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=3e-31 Score=219.62 Aligned_cols=159 Identities=40% Similarity=0.691 Sum_probs=146.7
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
||+++|+.+||||||+++|.++.|.+.+.+|.+..+ ...+.+++..+.+++||++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~---------------------- 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ---------------------- 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------------------
Confidence 899999999999999999999999999999995444 668899999999999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..++..+++++|++|+|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~ii~fd~ 81 (162)
T PF00071_consen 59 ---------------------------------------------------------ERFDSLRDIFYRNSDAIIIVFDV 81 (162)
T ss_dssp ---------------------------------------------------------GGGHHHHHHHHTTESEEEEEEET
T ss_pred ---------------------------------------------------------ccccccccccccccccccccccc
Confidence 66666777789999999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++||+++. .|++.+....+ ++|+++||||+|+... +.++.++++.++++++ .+|+|+||+++.
T Consensus 82 ~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~ 147 (162)
T PF00071_consen 82 TDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDE------------REVSVEEAQEFAKELG-VPYFEVSAKNGE 147 (162)
T ss_dssp TBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGG------------SSSCHHHHHHHHHHTT-SEEEEEBTTTTT
T ss_pred cccccccccc-cccccccccccccccceeeecccccccc------------ccchhhHHHHHHHHhC-CEEEEEECCCCC
Confidence 9999999999 99999998887 7999999999999864 8899999999999999 899999999999
Q ss_pred CHHHHHHHHHHHhc
Q psy9997 303 GLKNVFDEAILAAL 316 (330)
Q Consensus 303 ~v~~~f~~l~~~i~ 316 (330)
|+.++|..+++.++
T Consensus 148 ~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 148 NVKEIFQELIRKIL 161 (162)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999875
No 43
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=5.5e-31 Score=218.29 Aligned_cols=158 Identities=29% Similarity=0.546 Sum_probs=141.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||+++|..+.|...+.||++..+ ...+.+++..+.+++||++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--------------------- 59 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 4899999999999999999999999999999998766 457888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 60 ----------------------------------------------------------ERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred ----------------------------------------------------------HhHHhhHHHHhcCCcEEEEEEE
Confidence 5566666777889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++||+++. .|+..+.... .+.|+++||||.|+... +.+..+++..+++.++ .+|+|+||++|
T Consensus 82 ~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 147 (161)
T cd04117 82 ISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQK------------RQVGDEQGNKLAKEYG-MDFFETSACTN 147 (161)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 99999999998 8999987765 47999999999999765 7888999999999987 79999999999
Q ss_pred CCHHHHHHHHHHH
Q psy9997 302 KGLKNVFDEAILA 314 (330)
Q Consensus 302 ~~v~~~f~~l~~~ 314 (330)
.|++++|++++++
T Consensus 148 ~~v~~~f~~l~~~ 160 (161)
T cd04117 148 SNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999865
No 44
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=8.2e-31 Score=224.83 Aligned_cols=163 Identities=31% Similarity=0.524 Sum_probs=145.4
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|.++.|...+.||++..+. ..+.+++..+.+.+||++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~------------------- 65 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ------------------- 65 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 4689999999999999999999999999899999987664 57777888888999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..++++++++++|
T Consensus 66 ------------------------------------------------------------~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 66 ------------------------------------------------------------ERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred ------------------------------------------------------------hhHHHHHHHHhCCCcEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+++. .|+..+.......|+++||||+|+... +.+..+++..+++.++ .+|+++||++
T Consensus 86 ~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 151 (199)
T cd04110 86 YDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPER------------KVVETEDAYKFAGQMG-ISLFETSAKE 151 (199)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 9999999999998 899999887788999999999999764 6678889999999887 7899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|++++..+++
T Consensus 152 ~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 152 NINVEEMFNCITELVLR 168 (199)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999999874
No 45
>KOG0395|consensus
Probab=99.97 E-value=2e-30 Score=220.28 Aligned_cols=163 Identities=34% Similarity=0.560 Sum_probs=150.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
...|++++|.+|||||+|+.+|.+..|.+.|.||+++.|.+.+.+++..+.+.|+||+|+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~-------------------- 61 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQ-------------------- 61 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCc--------------------
Confidence 468999999999999999999999999999999999999999999999999999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+..++..++++++++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~gF~lVy 82 (196)
T KOG0395|consen 62 -----------------------------------------------------------EEFSAMRDLYIRNGDGFLLVY 82 (196)
T ss_pred -----------------------------------------------------------ccChHHHHHhhccCcEEEEEE
Confidence 677777888889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
+++++.||+.+. .++..|.+. ...+|+++||||+|+... |+|+.+++++++..++ ++|+|+||+
T Consensus 83 sitd~~SF~~~~-~l~~~I~r~~~~~~~PivlVGNK~Dl~~~------------R~V~~eeg~~la~~~~-~~f~E~Sak 148 (196)
T KOG0395|consen 83 SITDRSSFEEAK-QLREQILRVKGRDDVPIILVGNKCDLERE------------RQVSEEEGKALARSWG-CAFIETSAK 148 (196)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhhCcCCCCEEEEEEcccchhc------------cccCHHHHHHHHHhcC-CcEEEeecc
Confidence 999999999999 788888443 257899999999999876 9999999999999998 679999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
.+.+++++|..+++.+-.
T Consensus 149 ~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 149 LNYNVDEVFYELVREIRL 166 (196)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 999999999999998865
No 46
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=7.1e-30 Score=210.93 Aligned_cols=94 Identities=24% Similarity=0.356 Sum_probs=82.0
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+++.+|++++|||+++++||+++. .|+.++..+. .++|+++||||.|+... .++.++.+++++++++
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~----------~~~~v~~~~~~~~~~~ 130 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISES----------NPRVIDDARARQLCAD 130 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhc----------CCcccCHHHHHHHHHH
Confidence 456789999999999999999998 7999988765 57899999999998532 1278999999999988
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+.+.|+||||++|.||+++|+.+++.
T Consensus 131 ~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 131 MKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred hCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 765799999999999999999999865
No 47
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.5e-30 Score=216.91 Aligned_cols=174 Identities=54% Similarity=0.967 Sum_probs=149.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+.||+++|++|||||||+++|.++.|...+.||.+..+...+.+++..+.+.+|||+|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ--------------------- 59 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 36899999999999999999999999999999999888777888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.|...+..++.++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 60 ----------------------------------------------------------EDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred ----------------------------------------------------------hhhhhccccccCCCCEEEEEEE
Confidence 5555566667889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++++|+++.+.|+..+.+...+.|+++|+||+|+.......+.........+..++++++++..+...|+++||++|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE 161 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence 99999999997679998887777899999999999976544333443444567788999999999886789999999999
Q ss_pred CHHHHHHHHHHHh
Q psy9997 303 GLKNVFDEAILAA 315 (330)
Q Consensus 303 ~v~~~f~~l~~~i 315 (330)
|++++|+.+++++
T Consensus 162 ~v~~lf~~l~~~~ 174 (175)
T cd01870 162 GVREVFEMATRAA 174 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 48
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=1.3e-30 Score=225.79 Aligned_cols=169 Identities=25% Similarity=0.427 Sum_probs=132.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|..+.|.. +.||++..+... ....+.+.+|||+|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~---------------------- 54 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGR---------------------- 54 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCc----------------------
Confidence 589999999999999999999999875 578886554321 113566778888877
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..++..+++++|++|+|||+
T Consensus 55 ---------------------------------------------------------e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 55 ---------------------------------------------------------EQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred ---------------------------------------------------------ccchhhHHHHhccCCEEEEEEEC
Confidence 66666677788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchh-------hHHhhhCCCCCcCHHHHHHHHHHhCC-----
Q psy9997 224 VSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPT-------LEKLAKNKQKPISFEQGEKLAKELKA----- 290 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~----- 290 (330)
++++||+++. .|...+.+. ..++|+||||||+|+...... .........++++.+++++++++.+.
T Consensus 78 t~~~Sf~~l~-~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 78 SNVQSLEELE-DRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 9999999998 565555544 367999999999999752110 11112233589999999999998763
Q ss_pred --------eeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 291 --------VKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 291 --------~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
++|+|+||++|.||+++|..+++.++
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999998776
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=8.3e-31 Score=217.61 Aligned_cols=160 Identities=28% Similarity=0.548 Sum_probs=142.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||++++..+.|.+.+.||++..+...+.+++..+.+++|||+|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--------------------- 59 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 47999999999999999999999999999999999888888888888999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 60 ----------------------------------------------------------EQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred ----------------------------------------------------------ccchhHHHHHHhhCCEEEEEEE
Confidence 6666777778899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+++. .|+..+... ..+.|+++||||+|+... +.+..+++..+++.++ ++|+++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (164)
T cd04175 82 ITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWG-CAFLETSAKA 147 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhc------------cEEcHHHHHHHHHHhC-CEEEEeeCCC
Confidence 99999999998 788887654 368999999999999764 6677788889998887 7999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|.+++..+
T Consensus 148 ~~~v~~~~~~l~~~l 162 (164)
T cd04175 148 KINVNEIFYDLVRQI 162 (164)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 50
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=1e-30 Score=220.45 Aligned_cols=163 Identities=31% Similarity=0.539 Sum_probs=138.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEEC----------CceeeeeeeecCCCccccccCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG----------GEPYTLGLFDTAGQEDYDRLRPL 130 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~----------~~~~~l~i~Dt~g~~~~~~l~~~ 130 (330)
..+||+++|++|||||||+++|....|...+.+|++..+.. .+... +..+.+.+|||+|+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------- 73 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ--------- 73 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh---------
Confidence 45899999999999999999999999999999999876643 34332 23344555555554
Q ss_pred CCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc
Q psy9997 131 SYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS 210 (330)
Q Consensus 131 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~ 210 (330)
+++...+..+
T Consensus 74 ----------------------------------------------------------------------~~~~~~~~~~ 83 (180)
T cd04127 74 ----------------------------------------------------------------------ERFRSLTTAF 83 (180)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 7777788888
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL 288 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 288 (330)
++++|++++|||+++++||.++. .|+..+.... +++|+++||||+|+..+ +.++.+++..+++.+
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~------------~~v~~~~~~~~~~~~ 150 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIVLCGNKADLEDQ------------RQVSEEQAKALADKY 150 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEeCccchhc------------CccCHHHHHHHHHHc
Confidence 99999999999999999999998 8999987754 57899999999999765 778889999999999
Q ss_pred CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 289 KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 289 ~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+ ++|+++||++|.|++++|+.+++.+++
T Consensus 151 ~-~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 151 G-IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred C-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 8 699999999999999999999988865
No 51
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=1.4e-30 Score=217.12 Aligned_cols=163 Identities=28% Similarity=0.550 Sum_probs=144.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|.+..|.+.+.||.+..+. ..+.+++..+.+++||++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~------------------- 62 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ------------------- 62 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch-------------------
Confidence 3589999999999999999999999999999999987764 47788888889999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 63 ------------------------------------------------------------ERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 55555566678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++++|+++. .|+..+.+.. .++|+++||||+|+.+. +.+..+++.++++.++ .+|+|+||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 148 (167)
T cd01867 83 YDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEK------------RVVSKEEGEALADEYG-IKFLETSAK 148 (167)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999998 7999988765 57999999999999764 6778889999999887 699999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+++++++++
T Consensus 149 ~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 149 ANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998865
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=9.3e-30 Score=221.27 Aligned_cols=163 Identities=24% Similarity=0.423 Sum_probs=134.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee-EEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+++||+++|++|||||||+.||..+.|...+.||++..+. ..+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~---------------------------------- 56 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF---------------------------------- 56 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEE----------------------------------
Confidence 56899999999999999999999999999999999863332 1221
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.++..+.+.+|||+|+
T Consensus 57 --------------------------~~~~~~~l~i~Dt~G~-------------------------------------- 72 (219)
T PLN03071 57 --------------------------TNCGKIRFYCWDTAGQ-------------------------------------- 72 (219)
T ss_pred --------------------------ECCeEEEEEEEECCCc--------------------------------------
Confidence 2223455667777777
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
++|..++..+++++|++++|||+++++||+++. .|+.+
T Consensus 73 -----------------------------------------~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~-~w~~~ 110 (219)
T PLN03071 73 -----------------------------------------EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRD 110 (219)
T ss_pred -----------------------------------------hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHH-HHHHH
Confidence 666667777888999999999999999999998 89999
Q ss_pred hhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 240 i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+.+...+.|+++||||+|+.. +.+..+++ .+++..+ +.|+|+||++|.|++++|++++..+++.
T Consensus 111 i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 111 LCRVCENIPIVLCGNKVDVKN-------------RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHHhCCCCcEEEEEEchhhhh-------------ccCCHHHH-HHHHhcC-CEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 988778899999999999953 34455555 6777766 7899999999999999999999999765
No 53
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.1e-30 Score=220.28 Aligned_cols=162 Identities=26% Similarity=0.431 Sum_probs=143.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|.++.|...+.+|.+..+ ...+.+++..+.+++||++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--------------------- 59 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--------------------- 59 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 5899999999999999999999999888999998766 457788888888999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~iilv~d 81 (188)
T cd04125 60 ----------------------------------------------------------ERFRSLNNSYYRGAHGYLLVYD 81 (188)
T ss_pred ----------------------------------------------------------HHHHhhHHHHccCCCEEEEEEE
Confidence 5566667778899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|+++. .|+.++.... .++|+++||||+|+... +.+..+++..+++..+ ++|+|+||++|
T Consensus 82 ~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~evSa~~~ 147 (188)
T cd04125 82 VTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNN------------KVVDSNIAKSFCDSLN-IPFFETSAKQS 147 (188)
T ss_pred CcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCccc------------ccCCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 99999999998 7999988764 46899999999999765 6788899999999887 59999999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy9997 302 KGLKNVFDEAILAALEP 318 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~ 318 (330)
.|++++|+.+++.++++
T Consensus 148 ~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 148 INVEEAFILLVKLIIKR 164 (188)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998754
No 54
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=3.5e-30 Score=220.43 Aligned_cols=174 Identities=26% Similarity=0.446 Sum_probs=141.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|..+.|...+.||.+..+ ...+.+++..+.+++|||+|.+.+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~---------------- 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG---------------- 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc----------------
Confidence 5899999999999999999999999999999997554 45777889999999999999843221
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++++ +.......++++|++++|||
T Consensus 65 ------------------------------------------------------~~~~e-~~~~~~~~~~~ad~iilv~D 89 (198)
T cd04142 65 ------------------------------------------------------TAGQE-WMDPRFRGLRNSRAFILVYD 89 (198)
T ss_pred ------------------------------------------------------cchhH-HHHHHHhhhccCCEEEEEEE
Confidence 11112 12223445789999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+++++||+.+. .|+..+.+.. .++|+++||||+|+... +.+..++++.++.+...++|+|+||
T Consensus 90 ~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa 156 (198)
T cd04142 90 ICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQQRH------------RFAPRHVLSVLVRKSWKCGYLECSA 156 (198)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECcccccc------------ccccHHHHHHHHHHhcCCcEEEecC
Confidence 99999999998 8888876653 57999999999999654 6677788888866443379999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++|.|++++|+.++..++.+.+.
T Consensus 157 k~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 157 KYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCCHHHHHHHHHHHhhccCCC
Confidence 99999999999999999876554
No 55
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=4.7e-30 Score=213.44 Aligned_cols=161 Identities=29% Similarity=0.540 Sum_probs=141.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|.+++|...+.||.+..+. .++..++..+.+++|||+|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--------------------- 60 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--------------------- 60 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence 79999999999999999999999999999999987664 46777788889999999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~~~~l~v~d 82 (165)
T cd01865 61 ----------------------------------------------------------ERYRTITTAYYRGAMGFILMYD 82 (165)
T ss_pred ----------------------------------------------------------HHHHHHHHHHccCCcEEEEEEE
Confidence 5566666778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|+.+. .|+..+.+.. .++|+++||||+|+... +.+..+++.++++.++ .+++++||++|
T Consensus 83 ~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (165)
T cd01865 83 ITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDE------------RVVSSERGRQLADQLG-FEFFEASAKEN 148 (165)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CEEEEEECCCC
Confidence 99999999998 8999987765 57999999999999765 6677888999999887 68999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.++..+.+
T Consensus 149 ~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 149 INVKQVFERLVDIICD 164 (165)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999887643
No 56
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=7.9e-30 Score=216.57 Aligned_cols=187 Identities=47% Similarity=0.815 Sum_probs=154.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+.|++++|++|+|||||++++..+.|...+.+|....+...+.+++..+.+.+||++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--------------------- 59 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQ--------------------- 59 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 46999999999999999999998888888888888888777788888888899999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...++.+++.+++++++||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 60 ----------------------------------------------------------EEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred ----------------------------------------------------------hhccccchhhcCCCCEEEEEEE
Confidence 4444444556788999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++++|+++...|+..+.++.+++|+++||||+|+..+....+. ....+.+..+++..+++.++...|+|+||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999976799999888788999999999999643221111 122367788899999999986789999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCcccC
Q psy9997 303 GLKNVFDEAILAALEPPEPPKKRKCVLL 330 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~~~~~~~~~~~~ 330 (330)
|++++|+.+.+.++..+...---+|+++
T Consensus 160 ~v~~~f~~l~~~~~~~~~~~~~~~~~~~ 187 (187)
T cd04129 160 GVDDVFEAATRAALLVRKSEPGAGCCII 187 (187)
T ss_pred CHHHHHHHHHHHHhcccCcccccCcccC
Confidence 9999999999888776555555677764
No 57
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=4e-30 Score=213.62 Aligned_cols=161 Identities=27% Similarity=0.539 Sum_probs=143.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||+++|++.+|...+.||++..+ ...+.+++..+.+++|||+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--------------------- 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCcc---------------------
Confidence 5899999999999999999999999999999998877 457888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~D 81 (168)
T cd04119 60 ----------------------------------------------------------PEYLEVRNEFYKDTQGVLLVYD 81 (168)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhccCCEEEEEEE
Confidence 5566667778899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++++++|+.+. .|+.++.+.. .+.|+++|+||+|+... +.+..++++.+++..+ .+++++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 147 (168)
T cd04119 82 VTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH------------RAVSEDEGRLWAESKG-FKYFET 147 (168)
T ss_pred CCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEchhcccc------------cccCHHHHHHHHHHcC-CeEEEE
Confidence 99999999998 8999987764 36899999999999753 6678889999999887 789999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+++.+++
T Consensus 148 Sa~~~~gi~~l~~~l~~~l~~ 168 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred ECCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999998864
No 58
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=5.2e-30 Score=214.36 Aligned_cols=163 Identities=29% Similarity=0.509 Sum_probs=140.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
||+++|++|||||||+++|.++.|.++|.||++..+. ..+.+++..+.+++|||+|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ---------------------- 59 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------------------
Confidence 7999999999999999999999999999999987775 57788888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..++..+++++|++++|||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~ad~~ilv~d~ 82 (170)
T cd04108 60 ---------------------------------------------------------ERFKCIASTYYRGAQAIIIVFDL 82 (170)
T ss_pred ---------------------------------------------------------HHHHhhHHHHhcCCCEEEEEEEC
Confidence 66666777788999999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++|+.+. .|+.++.+.. .++|+++||||+|+.... +..+..+++.++++.++ .+|+++||++|
T Consensus 83 ~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g 150 (170)
T cd04108 83 TDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSSPA----------QYALMEQDAIKLAAEMQ-AEYWSVSALSG 150 (170)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCccc----------cccccHHHHHHHHHHcC-CeEEEEECCCC
Confidence 9999999998 8999876543 357899999999996431 12345678888988887 58999999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy9997 302 KGLKNVFDEAILAALEP 318 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~ 318 (330)
.|++++|+.+...+.+.
T Consensus 151 ~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 151 ENVREFFFRVAALTFEL 167 (170)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 99999999999988664
No 59
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.5e-30 Score=218.27 Aligned_cols=162 Identities=28% Similarity=0.547 Sum_probs=141.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|..+.|. ..+.+|++..+. ..+.+++..+.+++|||+|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 60 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ-------------------- 60 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc--------------------
Confidence 58999999999999999999999885 478888887764 46788888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++...+..+++.+|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~ad~~i~v~ 81 (191)
T cd04112 61 -----------------------------------------------------------ERFRSVTHAYYRDAHALLLLY 81 (191)
T ss_pred -----------------------------------------------------------HHHHHhhHHHccCCCEEEEEE
Confidence 555556666788899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++++|+++. .|+..+.... .++|+++||||+|+..+ +.+..+++..+++.++ .+|+|+||++
T Consensus 82 D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~Sa~~ 147 (191)
T cd04112 82 DITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSGE------------RVVKREDGERLAKEYG-VPFMETSAKT 147 (191)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchhc------------cccCHHHHHHHHHHcC-CeEEEEeCCC
Confidence 999999999998 7999988876 47899999999999754 6778889999999987 6999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++++|+++++.+.+.
T Consensus 148 ~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 148 GLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988755
No 60
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=6.8e-30 Score=212.53 Aligned_cols=162 Identities=27% Similarity=0.557 Sum_probs=143.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++..+.|...+.+|.+..+ ...+.+++..+.+++||++|+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~-------------------- 61 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ-------------------- 61 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 47999999999999999999999999888999998766 457778888889999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..++..+++++|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 62 -----------------------------------------------------------ERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred -----------------------------------------------------------HhHHHHHHHHhCcCCEEEEEE
Confidence 556666667788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++++||.++. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++.++ ++|+++||++
T Consensus 83 d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 148 (166)
T cd01869 83 DVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDK------------RVVDYSEAQEFADELG-IPFLETSAKN 148 (166)
T ss_pred ECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECCC
Confidence 999999999998 7999988765 57999999999999765 6788899999999887 6999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|..+++.+.+
T Consensus 149 ~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 149 ATNVEQAFMTMAREIKK 165 (166)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998753
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=4.7e-29 Score=206.77 Aligned_cols=160 Identities=30% Similarity=0.558 Sum_probs=133.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.+|.++.|.+.+.||+.+.+...+.+++.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------------------------------- 47 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSS--------------------------------- 47 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCE---------------------------------
Confidence 48999999999999999999999999998888876555444444433
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+.+.+|||+|+
T Consensus 48 ---------------------------~~~l~i~Dt~G~----------------------------------------- 59 (163)
T cd04176 48 ---------------------------PSVLEILDTAGT----------------------------------------- 59 (163)
T ss_pred ---------------------------EEEEEEEECCCc-----------------------------------------
Confidence 344566777777
Q ss_pred eeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhh
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH 242 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 242 (330)
++|..++..+++++|++++|||+++++||+++. .|+..+.+
T Consensus 60 --------------------------------------~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~~~~ 100 (163)
T cd04176 60 --------------------------------------EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIK-PMRDQIVR 100 (163)
T ss_pred --------------------------------------ccccchHHHHHhhCCEEEEEEECCCHHHHHHHH-HHHHHHHH
Confidence 666667777888999999999999999999998 79888876
Q ss_pred cC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 243 HC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 243 ~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.. .++|+++||||+|+... +.+..+++..+++.++ .+++++||++|.|++++|..+++.+
T Consensus 101 ~~~~~~~piviv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 101 VKGYEKVPIILVGNKVDLESE------------REVSSAEGRALAEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred hcCCCCCCEEEEEECccchhc------------CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 53 58999999999999654 5677788889988887 6999999999999999999998754
No 62
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=8.2e-30 Score=210.47 Aligned_cols=159 Identities=37% Similarity=0.604 Sum_probs=140.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++||+++|++|||||||+++|.++.|...+.||.++.+...+.+++..+.+++|||+|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 59 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--------------------- 59 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 37999999999999999999999999999999999888778888888888999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..++++++++++|||
T Consensus 60 ----------------------------------------------------------~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 60 ----------------------------------------------------------EEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred ----------------------------------------------------------cchHHHHHHHHhcCCEEEEEEE
Confidence 6666667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++.+|+++. .|+..+.+.. .+.|+++|+||+|+.. +.+..+++..+++.++ .+++++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (162)
T cd04138 82 INSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAA-------------RTVSSRQGQDLAKSYG-IPYIETSAKT 146 (162)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc-------------ceecHHHHHHHHHHhC-CeEEEecCCC
Confidence 99999999998 7888887653 5789999999999964 4567788888988887 6999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+++++.+
T Consensus 147 ~~gi~~l~~~l~~~~ 161 (162)
T cd04138 147 RQGVEEAFYTLVREI 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 63
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=1.3e-29 Score=211.22 Aligned_cols=161 Identities=25% Similarity=0.439 Sum_probs=136.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++..+.+...+.||.+..+.. .+..++..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------------------- 59 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--------------------- 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 589999999999999999999999999999999876643 5666778888999999988
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..++..++..+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (166)
T cd00877 60 ----------------------------------------------------------EKFGGLRDGYYIGGQCAIIMFD 81 (166)
T ss_pred ----------------------------------------------------------hhhccccHHHhcCCCEEEEEEE
Confidence 5555566667889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++||+++. .|+.++.....++|+++||||+|+.. +.+.. ++.++++..+ +.|+|+||++|.
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~-------------~~~~~-~~~~~~~~~~-~~~~e~Sa~~~~ 145 (166)
T cd00877 82 VTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKD-------------RKVKA-KQITFHRKKN-LQYYEISAKSNY 145 (166)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhccc-------------ccCCH-HHHHHHHHcC-CEEEEEeCCCCC
Confidence 99999999998 89999988877999999999999963 33333 3456666654 789999999999
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy9997 303 GLKNVFDEAILAALEPP 319 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~ 319 (330)
|++++|+.+++.+++.+
T Consensus 146 ~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 146 NFEKPFLWLARKLLGNP 162 (166)
T ss_pred ChHHHHHHHHHHHHhcc
Confidence 99999999999998754
No 64
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=8.8e-30 Score=217.79 Aligned_cols=155 Identities=24% Similarity=0.455 Sum_probs=135.7
Q ss_pred eecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc
Q psy9997 69 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN 147 (330)
Q Consensus 69 vG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~ 147 (330)
+|+.|||||||+++|..+.|.+.|.||++..+. ..+.+++..+.+.+|||+|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~-------------------------- 54 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQ-------------------------- 54 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc--------------------------
Confidence 699999999999999999999999999987774 47788888999999999999
Q ss_pred hhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChh
Q psy9997 148 IRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~ 227 (330)
++|..+++.+++++|++++|||++++.
T Consensus 55 -----------------------------------------------------e~~~~l~~~~~~~ad~~ilV~D~t~~~ 81 (200)
T smart00176 55 -----------------------------------------------------EKFGGLRDGYYIQGQCAIIMFDVTARV 81 (200)
T ss_pred -----------------------------------------------------hhhhhhhHHHhcCCCEEEEEEECCChH
Confidence 666677777888999999999999999
Q ss_pred hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHH
Q psy9997 228 SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNV 307 (330)
Q Consensus 228 s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 307 (330)
||+++. .|+.++.+...++|++|||||+|+.. +.+..++ ..+++..+ +.|+|+||++|.||+++
T Consensus 82 S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-------------~~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 82 TYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKD-------------RKVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKP 145 (200)
T ss_pred HHHHHH-HHHHHHHHhCCCCCEEEEEECccccc-------------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 999998 89999998878999999999999953 3445444 36777776 78999999999999999
Q ss_pred HHHHHHHhcCC
Q psy9997 308 FDEAILAALEP 318 (330)
Q Consensus 308 f~~l~~~i~~~ 318 (330)
|++++..+++.
T Consensus 146 F~~l~~~i~~~ 156 (200)
T smart00176 146 FLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHhc
Confidence 99999999765
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=9.8e-30 Score=211.55 Aligned_cols=158 Identities=28% Similarity=0.496 Sum_probs=137.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|..+.|...+.||.+..+...+..++..+.+.+|||+|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~---------------------- 59 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGS---------------------- 59 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCC----------------------
Confidence 6899999999999999999999999999999998888777777788888999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..++..+++.++++++|||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d~ 82 (165)
T cd04140 60 ---------------------------------------------------------HQFPAMQRLSISKGHAFILVYSV 82 (165)
T ss_pred ---------------------------------------------------------CcchHHHHHHhhcCCEEEEEEEC
Confidence 44555556677889999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 224 VSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
++++||+++. .|+..+.+.. ++.|+++||||+|+... +.+..+++..++..++ +.|+|+||+
T Consensus 83 ~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~SA~ 148 (165)
T cd04140 83 TSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDESHK------------REVSSNEGAACATEWN-CAFMETSAK 148 (165)
T ss_pred CCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECcccccc------------CeecHHHHHHHHHHhC-CcEEEeecC
Confidence 9999999998 7877776542 57999999999999654 6788888899998887 689999999
Q ss_pred cCCCHHHHHHHHHHH
Q psy9997 300 TQKGLKNVFDEAILA 314 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~ 314 (330)
+|.|++++|++++..
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999998754
No 66
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=1.2e-29 Score=209.99 Aligned_cols=158 Identities=29% Similarity=0.529 Sum_probs=139.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC--CceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG--GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+||+++|++|+|||||++++.++.|...+.||++..+. ..+.+. +..+.+++|||+|+
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------------------- 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ------------------- 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch-------------------
Confidence 58999999999999999999999999999999987774 456665 67778888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 62 ------------------------------------------------------------EEFDAITKAYYRGAQACILV 81 (162)
T ss_pred ------------------------------------------------------------HHHHHhHHHHhcCCCEEEEE
Confidence 66666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+.+. .|+..+.....+.|+++|+||+|+..+ +.+..+++..+++.++ ++++++||++
T Consensus 82 ~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (162)
T cd04106 82 FSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLDQ------------AVITNEEAEALAKRLQ-LPLFRTSVKD 147 (162)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CeEEEEECCC
Confidence 9999999999998 899999887789999999999999765 6788889999999987 6999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
|.|++++|+.+...
T Consensus 148 ~~~v~~l~~~l~~~ 161 (162)
T cd04106 148 DFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998754
No 67
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=2e-29 Score=210.51 Aligned_cols=162 Identities=31% Similarity=0.530 Sum_probs=141.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+..+||+++|++|||||||+++|..++|...+.++.+..+ ...+.+++..+.+++||++|+
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------ 64 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ------------------ 64 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh------------------
Confidence 4578999999999999999999999999988889988766 457788899999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++.+|++++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 65 -------------------------------------------------------------ERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred -------------------------------------------------------------HHHHHhHHHHhcCCCEEEE
Confidence 6666677778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
|||+++++||+.+. .|..++.... .+.|+++||||+|+.. +.+..+++++++++++..+|+
T Consensus 84 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 84 TFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKNDIPE-------------RQVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred EEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECccccc-------------cccCHHHHHHHHHHCCCCeEE
Confidence 99999999999998 8988876543 4689999999999963 678889999999998766899
Q ss_pred EEeeccCCCHHHHHHHHHHHh
Q psy9997 295 ECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i 315 (330)
|+||++|.|++++|+.+++.+
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 999999999999999998753
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=1.1e-29 Score=210.67 Aligned_cols=161 Identities=32% Similarity=0.561 Sum_probs=141.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||++++.+..+...+.||.++.+...+.+++..+.+++|||+|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~---------------------- 58 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ---------------------- 58 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCc----------------------
Confidence 4899999999999999999999999999999998888778888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..++..+++++|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T smart00173 59 ---------------------------------------------------------EEFSAMRDQYMRTGEGFLLVYSI 81 (164)
T ss_pred ---------------------------------------------------------ccchHHHHHHHhhCCEEEEEEEC
Confidence 55556666778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++|+++. .|...+.+.. .+.|+++||||+|+... +.+..+++..+++.++ .+|+++||++|
T Consensus 82 ~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (164)
T smart00173 82 TDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESE------------RVVSTEEGKELARQWG-CPFLETSAKER 147 (164)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceEcHHHHHHHHHHcC-CEEEEeecCCC
Confidence 9999999998 7877776543 47899999999999764 6678888999999887 79999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+++++.+.+
T Consensus 148 ~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 148 VNVDEAFYDLVREIRK 163 (164)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999987653
No 69
>KOG0097|consensus
Probab=99.96 E-value=2.4e-29 Score=193.78 Aligned_cols=104 Identities=18% Similarity=0.413 Sum_probs=92.5
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
|+|+...+.+|+.+.+.++|||++.++++..+. .|+...+... ++..++++|||.|+... |.++++
T Consensus 71 erfravtrsyyrgaagalmvyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~q------------rdv~ye 137 (215)
T KOG0097|consen 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLESQ------------RDVTYE 137 (215)
T ss_pred HHHHHHHHHHhccccceeEEEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhhc------------ccCcHH
Confidence 667777777788888888899999999999998 8998887764 78999999999999765 999999
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++.+|+++.| ..|+|+||++|.||+++|.+...++.++
T Consensus 138 eak~faeeng-l~fle~saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 138 EAKEFAEENG-LMFLEASAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred HHHHHHhhcC-eEEEEecccccCcHHHHHHHHHHHHHHh
Confidence 9999999998 7999999999999999999998888743
No 70
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.6e-29 Score=218.53 Aligned_cols=163 Identities=33% Similarity=0.553 Sum_probs=142.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|||||||+++|.++.|...+.||++..+ ...+.+ ++..+.+++|||+|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~------------------- 62 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ------------------- 62 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcc-------------------
Confidence 58999999999999999999999999988899997665 446665 466788888888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 63 ------------------------------------------------------------ERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred ------------------------------------------------------------hhHHHHHHHHhcCCcEEEEE
Confidence 66666677788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||+++++||+++. .|+.++.+.. ..+|+++||||+|+... +.+..+++..+++.++ ++|+|+||
T Consensus 83 ~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa 148 (211)
T cd04111 83 FDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLESQ------------RQVTREEAEKLAKDLG-MKYIETSA 148 (211)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHhC-CEEEEEeC
Confidence 9999999999998 8999887654 36789999999999764 7788999999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 149 k~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988755
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=3.2e-29 Score=208.31 Aligned_cols=162 Identities=26% Similarity=0.459 Sum_probs=141.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||++++..+.|...+.+|.+..+ ...+.+++..+.+.+||++|+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~------------------- 62 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ------------------- 62 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------
Confidence 458999999999999999999999999988889987665 457788888888999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 63 ------------------------------------------------------------ERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 55666666778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..+++..+++.++...++|+||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 83 YDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ------------REVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred EECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcCCcEEEEEECC
Confidence 9999999999998 8999987754 58999999999999765 67888899999999886689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++|+.+.+.+
T Consensus 150 ~~~~v~~~~~~l~~~l 165 (165)
T cd01864 150 ESQNVEEAFLLMATEL 165 (165)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=3.4e-29 Score=208.04 Aligned_cols=160 Identities=28% Similarity=0.513 Sum_probs=141.6
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++.+..+...+.||.+..+ ...+..++..+.+.+||++|+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~-------------------- 62 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ-------------------- 62 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh--------------------
Confidence 47999999999999999999999999888899998776 447788888888999999988
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..+++.++++++++++||
T Consensus 63 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 63 -----------------------------------------------------------ERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHCCCCEEEEEE
Confidence 556666677788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++.+|+++. .|+..+.+... ++|+++||||+|+... +.+..++.+.+++..+ ++|+|+||++
T Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 149 (165)
T cd01868 84 DITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTEEAKAFAEKNG-LSFIETSALD 149 (165)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------ccCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999998 89999888764 5999999999999765 7788889999998876 7899999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+.++..+
T Consensus 150 ~~~v~~l~~~l~~~i 164 (165)
T cd01868 150 GTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=2.9e-29 Score=207.94 Aligned_cols=160 Identities=36% Similarity=0.593 Sum_probs=140.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+||+++|++|+|||||++++.+..+...+.+|.++.+.....+++..+.+++|||+|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 60 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQ--------------------- 60 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCC---------------------
Confidence 57999999999999999999999999999999998888777888888899999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+++..++..+++++|++++|||
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~~~~ilv~d 82 (164)
T cd04145 61 ----------------------------------------------------------EEFSAMREQYMRTGEGFLLVFS 82 (164)
T ss_pred ----------------------------------------------------------cchhHHHHHHHhhCCEEEEEEE
Confidence 5555566677889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+++. .|+..+.+.. .+.|+++|+||+|+... +.+..+++.++++.++ .+++++||++
T Consensus 83 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 148 (164)
T cd04145 83 VTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQ------------RKVSREEGQELARKLK-IPYIETSAKD 148 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCcccccc------------ceecHHHHHHHHHHcC-CcEEEeeCCC
Confidence 99999999998 7888877653 57899999999999764 6678888899999887 6999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+.+++.+
T Consensus 149 ~~~i~~l~~~l~~~~ 163 (164)
T cd04145 149 RLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998754
No 74
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=4.7e-29 Score=206.70 Aligned_cols=159 Identities=22% Similarity=0.396 Sum_probs=136.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++..+.|.+.+.++.+..+ ...+.+++..+.+++|||+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------------- 59 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 5899999999999999999999999888888886554 446677888888999999888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++|..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd04124 60 ----------------------------------------------------------ERFQTMHASYYHKAHACILVFD 81 (161)
T ss_pred ----------------------------------------------------------hhhhhhhHHHhCCCCEEEEEEE
Confidence 6666777788899999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++.+|+++. .|+..+.+..++.|+++|+||+|+... ..++..++++.++ ++++++||++|.
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~---------------~~~~~~~~~~~~~-~~~~~~Sa~~~~ 144 (161)
T cd04124 82 VTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS---------------VTQKKFNFAEKHN-LPLYYVSAADGT 144 (161)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh---------------HHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 99999999998 899999887778999999999998431 1244566777776 689999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q psy9997 303 GLKNVFDEAILAALEP 318 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~ 318 (330)
|++++|+.+++.++++
T Consensus 145 gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 145 NVVKLFQDAIKLAVSY 160 (161)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988765
No 75
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=3.4e-28 Score=214.62 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=132.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+|+.+.|...|.||+++.+.+.+.+++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~---------------------------------- 46 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGE---------------------------------- 46 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCE----------------------------------
Confidence 6999999999999999999999999988889987655544444433
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
.+.++||||+|+
T Consensus 47 --------------------------~~~l~I~Dt~G~------------------------------------------ 58 (247)
T cd04143 47 --------------------------VYQLDILDTSGN------------------------------------------ 58 (247)
T ss_pred --------------------------EEEEEEEECCCC------------------------------------------
Confidence 345566788777
Q ss_pred eeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc
Q psy9997 164 FISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH 243 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~ 243 (330)
+.|..++..++.++|++|+|||+++++||+++. .|+.++.+.
T Consensus 59 -------------------------------------~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~-~~~~~I~~~ 100 (247)
T cd04143 59 -------------------------------------HPFPAMRRLSILTGDVFILVFSLDNRESFEEVC-RLREQILET 100 (247)
T ss_pred -------------------------------------hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHH-HHHHHHHHh
Confidence 555556666778899999999999999999998 888887653
Q ss_pred ----------CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 244 ----------CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 244 ----------~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
..++|+|+|+||+|+... +++..+++.+++.....+.|+++||++|.|++++|+.++.
T Consensus 101 k~~~~~~~~~~~~~piIivgNK~Dl~~~------------~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 101 KSCLKNKTKENVKIPMVICGNKADRDFP------------REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred hcccccccccCCCCcEEEEEECccchhc------------cccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 247999999999999754 6678888888877544478999999999999999999998
Q ss_pred HhcCC
Q psy9997 314 AALEP 318 (330)
Q Consensus 314 ~i~~~ 318 (330)
.+.-+
T Consensus 169 ~~~~p 173 (247)
T cd04143 169 LAKLP 173 (247)
T ss_pred Hhccc
Confidence 77433
No 76
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=6.3e-29 Score=207.32 Aligned_cols=162 Identities=27% Similarity=0.529 Sum_probs=143.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++...++...+.++.+..+. ..+.+++....+.+||++|+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ-------------------- 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 479999999999999999999999999988898887764 46777888888889998888
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..++..+++++|++++||
T Consensus 64 -----------------------------------------------------------~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 64 -----------------------------------------------------------ESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 666666777888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++.||+++. .|+.++.+.. +++|+++|+||.|+... +.++.+++..++...+ ..|+|+||++
T Consensus 85 d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 150 (168)
T cd01866 85 DITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR------------REVSYEEGEAFAKEHG-LIFMETSAKT 150 (168)
T ss_pred ECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 999999999998 8999987764 68999999999999754 6788889999999887 6899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
+.|++++|..+++.+++
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998865
No 77
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=9.8e-29 Score=210.80 Aligned_cols=166 Identities=28% Similarity=0.518 Sum_probs=142.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC-CCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|..++|.. .|.+|++..+. ..+.+++..+.+.+||++|+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~-------------------- 60 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS-------------------- 60 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 589999999999999999999999875 78899988774 57888999999999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++..++..+++++|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~~d~iilv~ 81 (193)
T cd04118 61 -----------------------------------------------------------ERYEAMSRIYYRGAKAAIVCY 81 (193)
T ss_pred -----------------------------------------------------------hhhhhhhHhhcCCCCEEEEEE
Confidence 555556666788899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++++.+|+++. .|+..+....++.|+++|+||+|+.... ...+.+..+++..++..++ .+++++||++|
T Consensus 82 d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~~--------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (193)
T cd04118 82 DLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQD--------RSLRQVDFHDVQDFADEIK-AQHFETSSKTG 151 (193)
T ss_pred ECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEcccccccc--------cccCccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 999999999997 8999988876789999999999986431 1225677788889998887 68999999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy9997 302 KGLKNVFDEAILAALEP 318 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~ 318 (330)
.|++++|+.+.+.+++.
T Consensus 152 ~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 152 QNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999888653
No 78
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=5.1e-29 Score=216.30 Aligned_cols=163 Identities=27% Similarity=0.495 Sum_probs=145.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|.++.+...+.+|++..+. ..+.+++..+.+++||++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~------------------- 71 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ------------------- 71 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4689999999999999999999999998889999988774 58888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..++++++++++|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 72 ------------------------------------------------------------ERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 66666777788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++++|+++. .|+..+.+.. .++|+++||||+|+... +.+..++++.++..++ ++|+|+||+
T Consensus 92 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~l~~~~~-~~~~e~SA~ 157 (216)
T PLN03110 92 YDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHL------------RSVAEEDGQALAEKEG-LSFLETSAL 157 (216)
T ss_pred EECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999998 8999988775 47999999999999755 7788899999999887 799999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.++..+.+
T Consensus 158 ~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 158 EATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999888753
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.8e-28 Score=201.81 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=84.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.+..++..+++++|++++|||++++.+|+.+. .|+..+... .++|+++|+||+|+... +.+..++
T Consensus 65 ~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~------------~~~~~~~ 130 (169)
T cd01892 65 EVAILLNDAELAACDVACLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQ------------QQRYEVQ 130 (169)
T ss_pred ccccccchhhhhcCCEEEEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEccccccc------------ccccccC
Confidence 555666677788999999999999999999997 788766432 47999999999999654 4444456
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
..++++.++...++++||++|.|++++|+.+.+.+++
T Consensus 131 ~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 131 PDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 6778888874457999999999999999999998875
No 80
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=7.8e-29 Score=205.03 Aligned_cols=159 Identities=25% Similarity=0.503 Sum_probs=140.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++.+..+...+.++.+..+. ..+.+++..+.+++||++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--------------------- 59 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch---------------------
Confidence 58999999999999999999999998889999987764 46777888888899999888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04113 60 ----------------------------------------------------------ERFRSVTRSYYRGAAGALLVYD 81 (161)
T ss_pred ----------------------------------------------------------HHHHHhHHHHhcCCCEEEEEEE
Confidence 5555666777889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|.++. .|+.++.... +++|+++|+||+|+... +.+..+++..+++.++ +.|+++||+++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (161)
T cd04113 82 ITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQ------------REVTFLEASRFAQENG-LLFLETSALTG 147 (161)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchh------------ccCCHHHHHHHHHHcC-CEEEEEECCCC
Confidence 99999999998 8998887654 68999999999999764 7788999999999998 79999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++|+++++.+
T Consensus 148 ~~i~~~~~~~~~~~ 161 (161)
T cd04113 148 ENVEEAFLKCARSI 161 (161)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1e-28 Score=205.96 Aligned_cols=161 Identities=31% Similarity=0.527 Sum_probs=143.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||+++|.++.|...+.||.+..+...+.+++..+.+++|||+|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 59 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT---------------------- 59 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 6899999999999999999999999999999998888888888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
++|..+++.+++.++++++|||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~~~~~vlv~~~ 82 (168)
T cd04177 60 ---------------------------------------------------------EQFTAMRELYIKSGQGFLLVYSV 82 (168)
T ss_pred ---------------------------------------------------------ccchhhhHHHHhhCCEEEEEEEC
Confidence 55666677778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++++|+.+. .|...+.+.. .++|+++|+||.|+... +.+..+++.++++.++..+++++||++|
T Consensus 83 ~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 83 TSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDD------------RQVSREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred CCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhcccc------------CccCHHHHHHHHHHcCCceEEEeeCCCC
Confidence 9999999998 7888887643 57999999999999765 6778888889999887678999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy9997 302 KGLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~ 316 (330)
.|++++|++++..++
T Consensus 150 ~~i~~~f~~i~~~~~ 164 (168)
T cd04177 150 TNVDEVFIDLVRQII 164 (168)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998765
No 82
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=1.1e-28 Score=206.38 Aligned_cols=160 Identities=28% Similarity=0.503 Sum_probs=140.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||++++....|...+.++++..+. ..+.+++..+.+.+||++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 61 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ-------------------- 61 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCCh--------------------
Confidence 479999999999999999999999998888999977664 47788888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~ilv 220 (330)
+++. .++..+++++|++++|
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~d~~i~v 82 (170)
T cd04115 62 -----------------------------------------------------------ERFRKSMVQHYYRNVHAVVFV 82 (170)
T ss_pred -----------------------------------------------------------HHHHHhhHHHhhcCCCEEEEE
Confidence 4443 3556678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|..+. .|+..+.... .++|+++|+||+|+... +++..++++.+++.++ ++|+|+||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa 148 (170)
T cd04115 83 YDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLREQ------------IQVPTDLAQRFADAHS-MPLFETSA 148 (170)
T ss_pred EECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccchhh------------cCCCHHHHHHHHHHcC-CcEEEEec
Confidence 9999999999998 8999888764 57999999999999765 7788899999999886 79999999
Q ss_pred cc---CCCHHHHHHHHHHHh
Q psy9997 299 LT---QKGLKNVFDEAILAA 315 (330)
Q Consensus 299 ~~---~~~v~~~f~~l~~~i 315 (330)
++ +.|++++|..+++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999998765
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=7.1e-29 Score=206.26 Aligned_cols=160 Identities=33% Similarity=0.495 Sum_probs=137.5
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++++.+.|...+.++.+..+...+.+++..+.+++||++|++.+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------------- 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA-------------------- 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCccc--------------------
Confidence 689999999999999999999999889999988777778888999999999999998320
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+......+++.+|++++|||++
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~d~~i~v~d~~ 82 (165)
T cd04146 61 ----------------------------------------------------------DTEQLERSIRWADGFVLVYSIT 82 (165)
T ss_pred ----------------------------------------------------------ccchHHHHHHhCCEEEEEEECC
Confidence 1122334577899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 225 SPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++||+++. .|+..+.... .++|+++||||+|+... +.+..++++++++.++ .+|+|+||++|
T Consensus 83 ~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 148 (165)
T cd04146 83 DRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLLHY------------RQVSTEEGEKLASELG-CLFFEVSAAED 148 (165)
T ss_pred CHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchHHh------------CccCHHHHHHHHHHcC-CEEEEeCCCCC
Confidence 999999998 7988887753 48999999999998654 6788899999999988 69999999999
Q ss_pred C-CHHHHHHHHHHHhc
Q psy9997 302 K-GLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~-~v~~~f~~l~~~i~ 316 (330)
. |++++|+.+++.+.
T Consensus 149 ~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 149 YDGVHSVFHELCREVR 164 (165)
T ss_pred chhHHHHHHHHHHHHh
Confidence 5 99999999998764
No 84
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=212.41 Aligned_cols=164 Identities=26% Similarity=0.511 Sum_probs=144.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|...+|...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~------------------- 65 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ------------------- 65 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 3589999999999999999999999999889999987774 47778888888999999988
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 66 ------------------------------------------------------------~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 66 ------------------------------------------------------------ESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 55666667778889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++++|+.+. .|+..+.... .+.|+++|+||+|+... +.++.++++++++.++ ++|+|+||+
T Consensus 86 ~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~ 151 (210)
T PLN03108 86 YDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR------------RAVSTEEGEQFAKEHG-LIFMEASAK 151 (210)
T ss_pred EECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc------------cCCCHHHHHHHHHHcC-CEEEEEeCC
Confidence 9999999999998 7988876654 57999999999999764 7788999999999987 699999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
++.|++++|+++++.++++
T Consensus 152 ~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 152 TAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=2.6e-28 Score=202.38 Aligned_cols=160 Identities=30% Similarity=0.536 Sum_probs=136.3
Q ss_pred EeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+||+++|++|||||||++++..+ .|..++.+|++..+. ..+.++ +..+.+.+|||+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 62 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ------------------ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH------------------
Confidence 58999999999999999999865 688899999986664 455554 56788888888888
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 63 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 81 (164)
T cd04101 63 -------------------------------------------------------------ELYSDMVSNYWESPSVFIL 81 (164)
T ss_pred -------------------------------------------------------------HHHHHHHHHHhCCCCEEEE
Confidence 5555666677889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++++|.++. .|+..+.....++|+++|+||+|+... +++..++++.++..++ ++++++||+
T Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (164)
T cd04101 82 VYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLADK------------AEVTDAQAQAFAQANQ-LKFFKTSAL 147 (164)
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEeCC
Confidence 99999999999998 899998887678999999999999654 6677777888888777 689999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.++++++
T Consensus 148 ~~~gi~~l~~~l~~~~~ 164 (164)
T cd04101 148 RGVGYEEPFESLARAFH 164 (164)
T ss_pred CCCChHHHHHHHHHHhC
Confidence 99999999999998763
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=4.6e-28 Score=200.66 Aligned_cols=161 Identities=30% Similarity=0.538 Sum_probs=142.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||++++.+..+...+.++.+..+. ..+..++..+.+.+||++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------------------- 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--------------------- 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh---------------------
Confidence 58999999999999999999999998888888887764 47777888888888998888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T smart00175 60 ----------------------------------------------------------ERFRSITSSYYRGAVGALLVYD 81 (164)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhCCCCEEEEEEE
Confidence 6666677778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++.+++.+. .|+..+..+. +++|+++|+||+|+... +.+..++++.+++.++ ++++|+||++|
T Consensus 82 ~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 147 (164)
T smart00175 82 ITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLEDQ------------RQVSREEAEAFAEEHG-LPFFETSAKTN 147 (164)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcccc------------cCCCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 99999999998 7999988766 68999999999998754 6678888999999887 68999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.++..+.+
T Consensus 148 ~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 148 TNVEEAFEELAREILK 163 (164)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998865
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=4.6e-28 Score=210.94 Aligned_cols=160 Identities=27% Similarity=0.402 Sum_probs=136.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|||||||+++|..+.|. ..+.++.+ +.+..++.+++....+.+|||+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------------------- 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------------------- 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------------------
Confidence 48999999999999999999988886 77888887 5556788899999999999999992
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc-CCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP-QTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~-~~d~~ilv 220 (330)
. .....++. ++|++++|
T Consensus 62 ------------------------------------------------------------~--~~~~~~~~~~ad~iilV 79 (221)
T cd04148 62 ------------------------------------------------------------M--WTEDSCMQYQGDAFVVV 79 (221)
T ss_pred ------------------------------------------------------------h--HHHhHHhhcCCCEEEEE
Confidence 0 11222344 89999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.||+++. .|+..+.... .++|+|+|+||+|+... +.++.+++.+++..++ ++|+|+||
T Consensus 80 ~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e~SA 145 (221)
T cd04148 80 YSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDLARS------------REVSVQEGRACAVVFD-CKFIETSA 145 (221)
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhcccc------------ceecHHHHHHHHHHcC-CeEEEecC
Confidence 9999999999998 7988887754 57999999999999765 7788888999998887 68999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.||+++|+.++..+...
T Consensus 146 ~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 146 GLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999988643
No 88
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=9.9e-28 Score=200.12 Aligned_cols=170 Identities=71% Similarity=1.180 Sum_probs=143.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||+++|.++++...+.|+..+.+...+..++..+.+++||++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~---------------------- 58 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQ---------------------- 58 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCc----------------------
Confidence 5899999999999999999999999888899998888888888888999999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+...+..+++.+|++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 81 (171)
T cd00157 59 ---------------------------------------------------------EEYDRLRPLSYPNTDVFLICFSV 81 (171)
T ss_pred ---------------------------------------------------------ccccccchhhcCCCCEEEEEEEC
Confidence 44555566677899999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
+++.+|......|+..+.....+.|+++|+||+|+.......... ......+..+++..++..++..+|+++||++|.|
T Consensus 82 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 82 DSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 999999998867998888877799999999999998653321111 1122456788999999999866999999999999
Q ss_pred HHHHHHHHHH
Q psy9997 304 LKNVFDEAIL 313 (330)
Q Consensus 304 v~~~f~~l~~ 313 (330)
++++|+.+++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=1.1e-27 Score=198.47 Aligned_cols=160 Identities=29% Similarity=0.514 Sum_probs=142.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
++||+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~-------------------- 60 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ-------------------- 60 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch--------------------
Confidence 47999999999999999999999999888889998776 458888888899999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+++...+..+++++|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 61 -----------------------------------------------------------ERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 555566667788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++++|+... .|+..+.... ..+|+++|+||+|+... +.+..+++..+++.++ ..++++||++
T Consensus 82 d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (163)
T cd01860 82 DITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESK------------RQVSTEEAQEYADENG-LLFFETSAKT 147 (163)
T ss_pred ECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------CcCCHHHHHHHHHHcC-CEEEEEECCC
Confidence 999999999998 8999887776 67999999999999754 6678888999999988 7899999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|++++..+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=206.83 Aligned_cols=165 Identities=30% Similarity=0.565 Sum_probs=140.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------- 72 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ------------------- 72 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 458999999999999999999999887 467788887664 46778888888999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 73 ------------------------------------------------------------~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 73 ------------------------------------------------------------ERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred ------------------------------------------------------------hhhHHHHHHHHhcCCEEEEE
Confidence 55666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+++.+.|...+.... .+.|+++|+||+|+... +.+..+++..++..++ +.|+|+||
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~------------~~i~~~~~~~~~~~~~-~~~~e~SA 159 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE------------RDVSREEGMALAKEHG-CLFLECSA 159 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CEEEEEeC
Confidence 999999999999856877766543 46899999999999765 6678888889999887 68999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+...+.+.+
T Consensus 160 k~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 160 KTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999987654
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=2.3e-27 Score=198.09 Aligned_cols=164 Identities=29% Similarity=0.546 Sum_probs=140.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|||||||++++.+.++...+.+|.+..+. ..+.+.+..+.+.+||++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--------------------- 59 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--------------------- 59 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh---------------------
Confidence 58999999999999999999999998888889876664 46778888888888998888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..++..+++++|+++++||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (172)
T cd01862 60 ----------------------------------------------------------ERFQSLGVAFYRGADCCVLVYD 81 (172)
T ss_pred ----------------------------------------------------------HHHHhHHHHHhcCCCEEEEEEE
Confidence 5555666677889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCC-----CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQ-----KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~-----~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++++++|+++. .|...+..... ++|+++|+||+|+..+ +.+..++...+.+..+..+++++|
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~S 148 (172)
T cd01862 82 VTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKIDLEEK------------RQVSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcccccc------------cccCHHHHHHHHHHcCCceEEEEE
Confidence 99999999987 78887665543 7999999999999754 566778888898888767999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~ 319 (330)
|++|.|++++|+.+++.+++..
T Consensus 149 a~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 149 AKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999988753
No 92
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=2.6e-27 Score=195.76 Aligned_cols=158 Identities=31% Similarity=0.545 Sum_probs=137.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--------------------- 59 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 3899999999999999999999999888889888766 447778887888999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 60 ----------------------------------------------------------ERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhccCCEEEEEEE
Confidence 5555566667889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++|+++. .|+..+.... .+.|+++|+||+|+... +.+..++...+++..+ ..++++||+++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (161)
T cd01861 82 ITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDK------------RQVSTEEGEKKAKELN-AMFIETSAKAG 147 (161)
T ss_pred CcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhcccc------------CccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 99999999998 8998887654 36999999999999654 6778888999998887 78999999999
Q ss_pred CCHHHHHHHHHHH
Q psy9997 302 KGLKNVFDEAILA 314 (330)
Q Consensus 302 ~~v~~~f~~l~~~ 314 (330)
.|++++|.++...
T Consensus 148 ~~v~~l~~~i~~~ 160 (161)
T cd01861 148 HNVKELFRKIASA 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=3.9e-27 Score=194.91 Aligned_cols=161 Identities=34% Similarity=0.565 Sum_probs=141.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|+|||||++++....|...+.++.++.+......++..+.+.+||++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------------------- 58 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ---------------------- 58 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence 4899999999999999999999999999999998888888888888899999999998
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+...+..+++.++++++|||+
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T cd04139 59 ---------------------------------------------------------EDYAAIRDNYHRSGEGFLLVFSI 81 (164)
T ss_pred ---------------------------------------------------------hhhhHHHHHHhhcCCEEEEEEEC
Confidence 55556667788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
+++.+|.++. .|+..+... ..++|+++|+||+|+... +....++...+++.++ .+++++||++|
T Consensus 82 ~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 147 (164)
T cd04139 82 TDMESFTATA-EFREQILRVKDDDNVPLLLVGNKCDLEDK------------RQVSSEEAANLARQWG-VPYVETSAKTR 147 (164)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEeeCCCC
Confidence 9999999998 788777765 358999999999999753 4567778888888887 69999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.+.+.+.+
T Consensus 148 ~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 148 QNVEKAFYDLVREIRQ 163 (164)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987753
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=6.4e-27 Score=193.44 Aligned_cols=158 Identities=27% Similarity=0.547 Sum_probs=136.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+|++++|++|+|||||+++|.+..+...+.|+.+..+. ..+.+++..+.+.+||++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------------------- 59 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--------------------- 59 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc---------------------
Confidence 58999999999999999999999998888899987764 46677777888899999888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+......+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd01863 60 ----------------------------------------------------------ERFRTLTSSYYRGAQGVILVYD 81 (161)
T ss_pred ----------------------------------------------------------hhhhhhhHHHhCCCCEEEEEEE
Confidence 5555556667789999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
.+++.+|+.+. .|+..+..+. .++|+++|+||+|+.. +.+..+++..+++..+ ++++++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 146 (161)
T cd01863 82 VTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKEN-------------REVTREEGLKFARKHN-MLFIETSAKT 146 (161)
T ss_pred CCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCcccc-------------cccCHHHHHHHHHHcC-CEEEEEecCC
Confidence 99999999998 7999888764 5799999999999973 5567788999999886 7999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy9997 301 QKGLKNVFDEAILAA 315 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i 315 (330)
|.|++++|+.+++++
T Consensus 147 ~~gi~~~~~~~~~~~ 161 (161)
T cd01863 147 RDGVQQAFEELVEKI 161 (161)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999998763
No 95
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=4.9e-27 Score=195.51 Aligned_cols=164 Identities=27% Similarity=0.430 Sum_probs=126.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|++++|++|||||||+++|..++|...+.++ ...+.....+++..+.+.+|||+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~---------------------- 57 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSR---------------------- 57 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCc----------------------
Confidence 48999999999999999999999987765443 3444455566777888899999888
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+.+...+..+++.+|++++|||+
T Consensus 58 ---------------------------------------------------------~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 58 ---------------------------------------------------------PQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred ---------------------------------------------------------hhhhHHHhhhcccCCEEEEEEEC
Confidence 33333334456889999999999
Q ss_pred CChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC-eeEEEEeeccCC
Q psy9997 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA-VKYVECSALTQK 302 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 302 (330)
+++.+|+.+...|+..++....++|+++|+||+|+..... .....++...++..+.. .+++++||++|.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS----------QAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc----------hhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 9999999986579988887777899999999999976411 00123344444444432 379999999999
Q ss_pred CHHHHHHHHHHHhcC
Q psy9997 303 GLKNVFDEAILAALE 317 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~ 317 (330)
|++++|+.+...+++
T Consensus 151 ~v~~lf~~~~~~~~~ 165 (166)
T cd01893 151 NVSEVFYYAQKAVLH 165 (166)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998876
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=5.3e-27 Score=197.75 Aligned_cols=174 Identities=29% Similarity=0.500 Sum_probs=146.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
.||+++|++|+|||||++++....+...+.||.+..+...+..++..+.+.+||++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~---------------------- 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQ---------------------- 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCCh----------------------
Confidence 5899999999999999999999999888889988877777888888888899999988
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++...+..++..+++++++||+
T Consensus 60 ---------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~ 82 (180)
T cd04137 60 ---------------------------------------------------------DEYSILPQKYSIGIHGYILVYSV 82 (180)
T ss_pred ---------------------------------------------------------HhhHHHHHHHHhhCCEEEEEEEC
Confidence 55555666678889999999999
Q ss_pred CChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 224 VSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++..+|+.+. .|...+.+.. .+.|+++|+||+|+... +.+..++...+++.++ .+++++||+++
T Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 148 (180)
T cd04137 83 TSRKSFEVVK-VIYDKILDMLGKESVPIVLVGNKSDLHTQ------------RQVSTEEGKELAESWG-AAFLESSAREN 148 (180)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEchhhhhc------------CccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 9999999998 6766665543 47899999999999654 5667777888888877 68999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCC---CCCCCcccC
Q psy9997 302 KGLKNVFDEAILAALEPPEP---PKKRKCVLL 330 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~~~~---~~~~~~~~~ 330 (330)
.|++++|.++.+.+.+.+.. ..+.+|++|
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T cd04137 149 ENVEEAFELLIEEIEKVENPLDPGQKKKCSIM 180 (180)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence 99999999999888755333 346799987
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=1.6e-26 Score=190.70 Aligned_cols=160 Identities=34% Similarity=0.594 Sum_probs=136.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||++++....+...+.++....+ ...+...+....+.+||++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------------------- 59 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ--------------------- 59 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCch---------------------
Confidence 5899999999999999999999998877777775555 446666777778888888887
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..+++.+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (162)
T cd04123 60 ----------------------------------------------------------ERYHALGPIYYRDADGAILVYD 81 (162)
T ss_pred ----------------------------------------------------------HHHHHhhHHHhccCCEEEEEEE
Confidence 5555666777889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++++++.+. .|+.++.+... ++|+++|+||+|+... +++..+++.++++..+ ..++++||+++
T Consensus 82 ~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 147 (162)
T cd04123 82 ITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQ------------RVVSKSEAEEYAKSVG-AKHFETSAKTG 147 (162)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 99999999998 79988877653 7899999999999754 6677788888888887 68999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy9997 302 KGLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~ 316 (330)
.|++++|+++.+.++
T Consensus 148 ~gi~~~~~~l~~~~~ 162 (162)
T cd04123 148 KGIEELFLSLAKRMI 162 (162)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999988763
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=1.1e-26 Score=193.93 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=119.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||++++..+.+. .+.||++..+. .+ ....+.+++|||+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~------------------- 63 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TV--TYKNVKFNVWDVGGQ------------------- 63 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EE--EECCEEEEEEECCCC-------------------
Confidence 46789999999999999999999988875 46788876553 22 234577888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..+++.+++++|++++|
T Consensus 64 ------------------------------------------------------------~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 64 ------------------------------------------------------------DKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 66666667788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhh-c-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH---h-CCeeEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITH-H-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE---L-KAVKYV 294 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~-~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~~~~ 294 (330)
||++++.+|+++. .|+.++.. . ..++|++||+||+|+.. .+..++++.+... . ..+.++
T Consensus 84 ~D~t~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 84 VDSADRDRIDEAR-QELHRIINDREMRDALLLVFANKQDLPD--------------AMKPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred EeCCchhhHHHHH-HHHHHHhcCHhhcCCcEEEEEECcCCcc--------------CCCHHHHHHHcCCCccCCCcEEEE
Confidence 9999999999998 55555443 2 36799999999999963 2455666665431 1 124789
Q ss_pred EEeeccCCCHHHHHHHHHH
Q psy9997 295 ECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~ 313 (330)
++||++|.|++++|++|.+
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 9999999999999998864
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=4.6e-27 Score=195.40 Aligned_cols=152 Identities=16% Similarity=0.219 Sum_probs=123.3
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
|+++|++|||||||+++|.++.+...+.||++..+ ..++...+.+.+||++|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~------------------------ 54 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGS------------------------ 54 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCC------------------------
Confidence 78999999999999999999999889999987543 334556677888888887
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~ 225 (330)
+++..++..+++++|++++|||.++
T Consensus 55 -------------------------------------------------------~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 55 -------------------------------------------------------QNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred -------------------------------------------------------cchhHHHHHHHhhCCEEEEEEECCC
Confidence 6666667778899999999999999
Q ss_pred hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC----HHHHHHHHHHhCCeeEEEEeecc-
Q psy9997 226 PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS----FEQGEKLAKELKAVKYVECSALT- 300 (330)
Q Consensus 226 ~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~e~Sa~~- 300 (330)
+.+|..+. .|+..+.....++|+++|+||+|+..+ +.+. ..++..++++.+ +.++++||++
T Consensus 80 ~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~ 145 (164)
T cd04162 80 SERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAA------------RSVQEIHKELELEPIARGRR-WILQGTSLDDD 145 (164)
T ss_pred HHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCC------------CCHHHHHHHhCChhhcCCCc-eEEEEeeecCC
Confidence 99999998 788887665578999999999999654 2221 123455666665 7899999999
Q ss_pred -----CCCHHHHHHHHHH
Q psy9997 301 -----QKGLKNVFDEAIL 313 (330)
Q Consensus 301 -----~~~v~~~f~~l~~ 313 (330)
++||+++|+.++.
T Consensus 146 ~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 146 GSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CChhHHHHHHHHHHHHhc
Confidence 9999999998864
No 100
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=2.5e-26 Score=189.22 Aligned_cols=158 Identities=36% Similarity=0.633 Sum_probs=137.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|+|||||++++++..+...+.++.+..+...+..++..+.+++||++|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------------------- 57 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ----------------------- 57 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCCh-----------------------
Confidence 689999999999999999999999999999988766777778877888899999888
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...+..+++.+|++++|||++
T Consensus 58 --------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~ 81 (160)
T cd00876 58 --------------------------------------------------------EEFSAMRDLYIRQGDGFILVYSIT 81 (160)
T ss_pred --------------------------------------------------------HHHHHHHHHHHhcCCEEEEEEECC
Confidence 445555666788899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 225 SPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
+++++.++. .|...+..... .+|+++|+||+|+... +.+..+++..+++.++ .+++++||+++.
T Consensus 82 ~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~~ 147 (160)
T cd00876 82 DRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENE------------RQVSKEEGKALAKEWG-CPFIETSAKDNI 147 (160)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCccccc------------ceecHHHHHHHHHHcC-CcEEEeccCCCC
Confidence 999999998 77777776654 8999999999999764 6678889999999887 799999999999
Q ss_pred CHHHHHHHHHHHh
Q psy9997 303 GLKNVFDEAILAA 315 (330)
Q Consensus 303 ~v~~~f~~l~~~i 315 (330)
|++++|+.+++.+
T Consensus 148 ~i~~l~~~l~~~i 160 (160)
T cd00876 148 NIDEVFKLLVREI 160 (160)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998754
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=7.3e-26 Score=188.61 Aligned_cols=162 Identities=28% Similarity=0.508 Sum_probs=137.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|++++|++|+|||||++++....+...+.+|++..+ ...+.+++..+.+.+||++|+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~------------------- 66 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ------------------- 66 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 358999999999999999999998888888888887555 446778888888888998888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++.+|++++|
T Consensus 67 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 67 ------------------------------------------------------------ERFRSITQSYYRSANALILT 86 (169)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 55555556678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+.+. .|+.++.... .++|+++|+||+|+... +.+..+....+.+... ..++++||+
T Consensus 87 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~------------~~i~~~~~~~~~~~~~-~~~~~~Sa~ 152 (169)
T cd04114 87 YDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER------------REVSQQRAEEFSDAQD-MYYLETSAK 152 (169)
T ss_pred EECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEeeCC
Confidence 9999999999998 8998887765 47999999999999754 6677777888887776 789999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+.+.++
T Consensus 153 ~~~gv~~l~~~i~~~~~ 169 (169)
T cd04114 153 ESDNVEKLFLDLACRLI 169 (169)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999988654
No 102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=1.8e-25 Score=191.20 Aligned_cols=100 Identities=20% Similarity=0.333 Sum_probs=77.4
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc--------------------CCCCcEEEEEeccCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--------------------CQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--------------------~~~~piilV~nK~Dl~~ 260 (330)
++|..+++.+++++|++|+|||+++++||+++. .|+.++... ..++|++|||||+|+..
T Consensus 65 e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 65 ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 777778888999999999999999999999998 999998653 14689999999999976
Q ss_pred CchhhHHhhhCCCCCcCHH----HHHHHHHHhCCeeEEEEeeccCC----------CHHHHHHHHHHH
Q psy9997 261 DAPTLEKLAKNKQKPISFE----QGEKLAKELKAVKYVECSALTQK----------GLKNVFDEAILA 314 (330)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~e~Sa~~~~----------~v~~~f~~l~~~ 314 (330)
+ |.+..+ ....+|++.+ .+.++.+|.+.. .+..+|+.++++
T Consensus 144 ~------------r~~~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 144 E------------KESSGNLVLTARGFVAEQGN-AEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred h------------cccchHHHhhHhhhHHHhcC-CceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 4 444433 3556788887 588888888654 245556555543
No 103
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=9.8e-25 Score=189.38 Aligned_cols=165 Identities=26% Similarity=0.490 Sum_probs=131.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee-EEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+.+||+++|++|||||||+.||+.+.|.+.|.||++..+. ..+.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------------------- 52 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFY---------------------------------- 52 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE----------------------------------
Confidence 46899999999999999999999999999999999864332 1221
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.++..+.+++|||+|+
T Consensus 53 --------------------------~~~~~i~i~~~Dt~g~-------------------------------------- 68 (215)
T PTZ00132 53 --------------------------TNCGPICFNVWDTAGQ-------------------------------------- 68 (215)
T ss_pred --------------------------ECCeEEEEEEEECCCc--------------------------------------
Confidence 2234456677788877
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+++..++..++.+++++++|||++++.+|..+. .|+..
T Consensus 69 -----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~ 106 (215)
T PTZ00132 69 -----------------------------------------EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRD 106 (215)
T ss_pred -----------------------------------------hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHH-HHHHH
Confidence 555555666778899999999999999999998 89999
Q ss_pred hhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 240 ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 240 i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+.....+.|+++||||+|+.. +.+..+. ..+++..+ +.|+++||++|.|++++|.++.++++..+
T Consensus 107 i~~~~~~~~i~lv~nK~Dl~~-------------~~~~~~~-~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 107 IVRVCENIPIVLVGNKVDVKD-------------RQVKARQ-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHhCCCCCEEEEEECccCcc-------------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 887778899999999999854 2333333 35666666 68999999999999999999999998654
Q ss_pred C
Q psy9997 320 E 320 (330)
Q Consensus 320 ~ 320 (330)
.
T Consensus 172 ~ 172 (215)
T PTZ00132 172 N 172 (215)
T ss_pred c
Confidence 3
No 104
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=5.2e-26 Score=192.03 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=120.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|+.|||||||++++..+.|. .+.||++..+. . ++...+.+++||++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq------------------- 71 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQ------------------- 71 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCC-------------------
Confidence 45689999999999999999999988875 46788876553 2 3334577888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++++.++..+++++|++|+|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 72 ------------------------------------------------------------DKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 66667777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYV 294 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~ 294 (330)
||++++++++++. .++..+... .+++|++||+||+|+... ...++......-. ..+.++
T Consensus 92 ~D~s~~~s~~~~~-~~l~~~l~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 92 VDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred EeCCcHHHHHHHH-HHHHHHhcCHhhCCCCEEEEEECCCCCCC--------------CCHHHHHHHhCccccCCCceEEE
Confidence 9999999999987 565555332 368999999999999643 2333332222111 113467
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++||++|+||+++|+++...+.+
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999988765
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.2e-25 Score=192.59 Aligned_cols=160 Identities=28% Similarity=0.452 Sum_probs=133.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|....+...+.+|++..+...+.+.+..+.+++||++|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------------------- 57 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGS----------------------- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCc-----------------------
Confidence 689999999999999999999999988889887666667778888888899999988
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.|..++..++..+|++++|||++
T Consensus 58 --------------------------------------------------------~~~~~~~~~~~~~ad~vilv~d~~ 81 (198)
T cd04147 58 --------------------------------------------------------YSFPAMRKLSIQNSDAFALVYAVD 81 (198)
T ss_pred --------------------------------------------------------hhhhHHHHHHhhcCCEEEEEEECC
Confidence 555556666788999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-HhCCeeEEEEeeccC
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-ELKAVKYVECSALTQ 301 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~e~Sa~~~ 301 (330)
++.+|+.+. .|+..+.... .++|+++|+||+|+... .+.+..+++.+... .++ .+|+++||++|
T Consensus 82 ~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----------~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g 148 (198)
T cd04147 82 DPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEE-----------ERQVPAKDALSTVELDWN-CGFVETSAKDN 148 (198)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccc-----------cccccHHHHHHHHHhhcC-CcEEEecCCCC
Confidence 999999998 8888877654 47999999999999652 14555555555544 334 68999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy9997 302 KGLKNVFDEAILAAL 316 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~ 316 (330)
.|++++|+++++.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (198)
T cd04147 149 ENVLEVFKELLRQAN 163 (198)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998875
No 106
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=7.6e-26 Score=188.93 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=124.1
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||++++.+..+.. +.||++..+. . ++...+.+.+|||+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~----------------------- 53 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-T--VEYKNLKFTIWDVGGK----------------------- 53 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-E--EEECCEEEEEEECCCC-----------------------
Confidence 68999999999999999999987754 7888876663 2 2334567788888888
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+++...+..+++++|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 54 --------------------------------------------------------HKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred --------------------------------------------------------hhcchHHHHHhccCCEEEEEEeCC
Confidence 555556666788999999999999
Q ss_pred ChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-----CeeEEEEe
Q psy9997 225 SPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-----AVKYVECS 297 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~S 297 (330)
++++|.++. .|+..+.+. ..+.|+++|+||+|+.. .++.++++++++..+ .+.++++|
T Consensus 78 ~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 78 HRDRVSEAH-SELAKLLTEKELRDALLLIFANKQDVAG--------------ALSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred cHHHHHHHH-HHHHHHhcChhhCCCCEEEEEeCcCccc--------------CCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 999999998 777777643 24689999999999953 356677777664322 13688999
Q ss_pred eccCCCHHHHHHHHHHHhcCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~ 319 (330)
|++|.|++++|+++.+.+.+.+
T Consensus 143 a~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999998877654
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=4.5e-26 Score=191.46 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=117.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||++++..+.|. .+.||++..+. .+.. ..+.+.+||++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~------------------- 67 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQ------------------- 67 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCC-------------------
Confidence 45799999999999999999999888774 46788876653 2222 4567788888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 68 ------------------------------------------------------------~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 68 ------------------------------------------------------------DKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred ------------------------------------------------------------hhhHHHHHHHhCCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
||+++++++++.. .|+..+... ..++|+++|+||+|+... ...++..... +... +.+
T Consensus 88 ~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~~ 151 (175)
T smart00177 88 VDSNDRDRIDEAR-EELHRMLNEDELRDAVILVFANKQDLPDA--------------MKAAEITEKLGLHSIRDRN-WYI 151 (175)
T ss_pred EECCCHHHHHHHH-HHHHHHhhCHhhcCCcEEEEEeCcCcccC--------------CCHHHHHHHhCccccCCCc-EEE
Confidence 9999999999988 566665432 357999999999999643 1222222211 1112 457
Q ss_pred EEEeeccCCCHHHHHHHHHHHh
Q psy9997 294 VECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+++||++|.|++++|+++...+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987764
No 108
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=2.5e-25 Score=182.32 Aligned_cols=156 Identities=32% Similarity=0.605 Sum_probs=136.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+||+++|++|+|||||++++.+..+...+.+|.+..+. ..+..++....+.+||++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--------------------- 59 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--------------------- 59 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh---------------------
Confidence 58999999999999999999999998888888887664 47777777888889998888
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+......+++++|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~d 81 (159)
T cd00154 60 ----------------------------------------------------------ERFRSITPSYYRGAHGAILVYD 81 (159)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhcCCCEEEEEEE
Confidence 5555566667888999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
.+++++++.+. .|+..+.... ...|+++|+||+|+..+ .....++...+++.++ .+++++||+++
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~~ 147 (159)
T cd00154 82 ITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLEDQ------------RQVSTEEAQQFAKENG-LLFFETSAKTG 147 (159)
T ss_pred CCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEccccccc------------ccccHHHHHHHHHHcC-CeEEEEecCCC
Confidence 99999999999 7999988876 68999999999999743 5677888999999876 79999999999
Q ss_pred CCHHHHHHHHH
Q psy9997 302 KGLKNVFDEAI 312 (330)
Q Consensus 302 ~~v~~~f~~l~ 312 (330)
.|++++|+.+.
T Consensus 148 ~~i~~~~~~i~ 158 (159)
T cd00154 148 ENVEELFQSLA 158 (159)
T ss_pred CCHHHHHHHHh
Confidence 99999999875
No 109
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=9.6e-26 Score=186.48 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=113.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||++++..+.|. .+.||++..+. .+. ...+.+.+||++|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~l~D~~G~---------------------- 54 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQ---------------------- 54 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEE--ECCEEEEEEECCCC----------------------
Confidence 58999999999999999999888886 47888876553 232 24577788888887
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++..++..+++++|++++|||+
T Consensus 55 ---------------------------------------------------------~~~~~~~~~~~~~ad~~i~v~D~ 77 (159)
T cd04150 55 ---------------------------------------------------------DKIRPLWRHYFQNTQGLIFVVDS 77 (159)
T ss_pred ---------------------------------------------------------HhHHHHHHHHhcCCCEEEEEEeC
Confidence 66666677788999999999999
Q ss_pred CChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHHH---HhCCeeEEEEe
Q psy9997 224 VSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLAK---ELKAVKYVECS 297 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~---~~~~~~~~e~S 297 (330)
+++.+|+++. .|+..+... ..++|+++|+||+|+... ...++ ...+.. ....+.++++|
T Consensus 78 ~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04150 78 NDRERIGEAR-EELQRMLNEDELRDAVLLVFANKQDLPNA--------------MSAAEVTDKLGLHSLRNRNWYIQATC 142 (159)
T ss_pred CCHHHHHHHH-HHHHHHHhcHHhcCCCEEEEEECCCCCCC--------------CCHHHHHHHhCccccCCCCEEEEEee
Confidence 9999999998 555555332 257899999999999642 12222 222211 01124688999
Q ss_pred eccCCCHHHHHHHHHH
Q psy9997 298 ALTQKGLKNVFDEAIL 313 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~ 313 (330)
|++|.|++++|+++..
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999998853
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=2.4e-25 Score=188.18 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=119.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++||+++|++|||||||++++..+.|.. +.||.+..+. .+. ...+.+++|||+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~~~l~D~~G~------------------- 71 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLKFTMWDVGGQ------------------- 71 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEEEEEEECCCC-------------------
Confidence 346899999999999999999998888764 6788876653 233 34577888888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++++.++..+++++|++|+|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 72 ------------------------------------------------------------DKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ------------------------------------------------------------HhHHHHHHHHhcCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH-----HHHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL-----AKELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 293 (330)
||++++++|++.. .++..+... ..++|+++|+||.|+... +..++.... ++.. .+.+
T Consensus 92 ~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~l~~~~~~~~-~~~~ 155 (182)
T PTZ00133 92 VDSNDRERIGDAR-EELERMLSEDELRDAVLLVFANKQDLPNA--------------MSTTEVTEKLGLHSVRQR-NWYI 155 (182)
T ss_pred EeCCCHHHHHHHH-HHHHHHHhCHhhcCCCEEEEEeCCCCCCC--------------CCHHHHHHHhCCCcccCC-cEEE
Confidence 9999999999988 555554332 257899999999999643 122222111 1111 1467
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+++...+.+.
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999887654
No 111
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.92 E-value=2.5e-25 Score=188.32 Aligned_cols=165 Identities=25% Similarity=0.291 Sum_probs=125.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.+||+++|++|||||||++++..+.|... .||.+..... .+.. ++..+.+.+|||+|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------ 62 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ------------------ 62 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCc------------------
Confidence 468999999999999999999999888654 6777654432 3433 345677888888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++++|++++
T Consensus 63 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 63 -------------------------------------------------------------EKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred -------------------------------------------------------------HhHHHHHHHHhccCCEEEE
Confidence 6666666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH--h---CCee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE--L---KAVK 292 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~---~~~~ 292 (330)
|||++++.+++.+. .|+.++.... .+.|+++|+||+|+... +..++..++... . ..++
T Consensus 82 v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd04152 82 VVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLPNA--------------LSVSEVEKLLALHELSASTPWH 146 (183)
T ss_pred EEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcccc--------------CCHHHHHHHhCccccCCCCceE
Confidence 99999999999987 7887776543 47999999999998632 333444444321 1 1246
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++++||++|.|++++|+.+++.+++.+..
T Consensus 147 ~~~~SA~~~~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 147 VQPACAIIGEGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999998765433
No 112
>PLN00023 GTP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=193.45 Aligned_cols=155 Identities=16% Similarity=0.303 Sum_probs=116.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+||++||++|||||||+.+|+.+.|...+.+|++..+ .+.+.+++......
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~------------------------- 73 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSN------------------------- 73 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccc-------------------------
Confidence 4579999999999999999999999999999999997554 33444331100000
Q ss_pred EEeeccCCCCCCCCCceeecceEEEE-ECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
.+. -++..+.++||||+|+
T Consensus 74 -----------------------~ik~d~~k~v~LqIWDTAGq------------------------------------- 93 (334)
T PLN00023 74 -----------------------SIKGDSERDFFVELWDVSGH------------------------------------- 93 (334)
T ss_pred -----------------------cccccCCceEEEEEEECCCC-------------------------------------
Confidence 000 0123456777777777
Q ss_pred CCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchh
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVP 238 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~ 238 (330)
++|..+++.++++++++|+|||++++++|+++. .|+.
T Consensus 94 ------------------------------------------ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~-kWl~ 130 (334)
T PLN00023 94 ------------------------------------------ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQ-KWAS 130 (334)
T ss_pred ------------------------------------------hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHH-HHHH
Confidence 777788888899999999999999999999998 8999
Q ss_pred hhhhcC-------------CCCcEEEEEeccCCCCCchhhHHhhhCCCCC---cCHHHHHHHHHHhCCee
Q psy9997 239 EITHHC-------------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKP---ISFEQGEKLAKELKAVK 292 (330)
Q Consensus 239 ~i~~~~-------------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~ 292 (330)
++.... .++|++|||||+|+.... ..+. +..+++++||++++..+
T Consensus 131 eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~---------~~r~~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 131 EVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE---------GTRGSSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred HHHHhcccccccccccccCCCCcEEEEEECccccccc---------cccccccccHHHHHHHHHHcCCCc
Confidence 998753 258999999999996531 0022 47899999999988544
No 113
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=4.1e-24 Score=179.37 Aligned_cols=143 Identities=26% Similarity=0.456 Sum_probs=124.1
Q ss_pred CCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 86 NKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.|.+.|.||+|..+ ...+.+++..+.+.||||+|+
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~------------------------------------------- 39 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ------------------------------------------- 39 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCCh-------------------------------------------
Confidence 467888999998777 457888999999999999999
Q ss_pred eeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC
Q psy9997 165 ISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 244 (330)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~ 244 (330)
+++..+++.++++||++++|||+++++||+++. .|+..+....
T Consensus 40 ------------------------------------e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~-~w~~~i~~~~ 82 (176)
T PTZ00099 40 ------------------------------------ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNER 82 (176)
T ss_pred ------------------------------------HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHH-HHHHHHHHhc
Confidence 666667777889999999999999999999998 8999887654
Q ss_pred -CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 245 -QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 245 -~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.++|++|||||+|+... +.+..+++..+++.++ ..|+|+||++|.||+++|++++..+.+.+++
T Consensus 83 ~~~~piilVgNK~DL~~~------------~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDL------------RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 57899999999999754 6788899999999887 6899999999999999999999998765544
No 114
>KOG4252|consensus
Probab=99.91 E-value=3.1e-26 Score=183.38 Aligned_cols=112 Identities=27% Similarity=0.404 Sum_probs=102.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
..+||++||+.|.++...||+.|.+.+|||+-+|+.||+.+. .|.+.+......+|.++|-||+|+.++
T Consensus 71 ~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlved---------- 139 (246)
T KOG4252|consen 71 SMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVED---------- 139 (246)
T ss_pred HHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHh----------
Confidence 345666666999999999999999999999999999999999 899999998899999999999999987
Q ss_pred CCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 272 KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++..++++.+++.++ ..++.+|++...||..+|..++.++.+
T Consensus 140 --s~~~~~evE~lak~l~-~RlyRtSvked~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 140 --SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNVMHVFAYLAEKLTQ 182 (246)
T ss_pred --hhcchHHHHHHHHHhh-hhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8899999999999998 799999999999999999999888764
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=1.5e-24 Score=181.65 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=118.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+..+||+++|++|+|||||++++.+..+ ..+.||.+..+ ..+.++ .+.+.+|||+|+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~------------------ 68 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQ------------------ 68 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCC------------------
Confidence 35568999999999999999999998754 45677776333 234443 466788888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 69 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 69 -------------------------------------------------------------KTLRPYWRNYFESTDALIW 87 (173)
T ss_pred -------------------------------------------------------------HHHHHHHHHHhCCCCEEEE
Confidence 5555555667889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH----hCCeeE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE----LKAVKY 293 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~ 293 (330)
|||++++.+|+++. .|+..+... ..++|+++|+||+|+... ...+++.++.+. ...+++
T Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 88 VVDSSDRLRLDDCK-RELKELLQEERLAGATLLILANKQDLPGA--------------LSEEEIREALELDKISSHHWRI 152 (173)
T ss_pred EEECCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcccccC--------------CCHHHHHHHhCccccCCCceEE
Confidence 99999999999987 677766443 268999999999999653 244455554432 123689
Q ss_pred EEEeeccCCCHHHHHHHHHH
Q psy9997 294 VECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~ 313 (330)
+++||++|.|++++|++++.
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999998864
No 116
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.2e-23 Score=202.45 Aligned_cols=169 Identities=19% Similarity=0.223 Sum_probs=116.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|.+|||||||+++|+++.+ ...+..|..+.+...+..++.. +.+|||+|.++....
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~------------- 275 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQ------------- 275 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccc-------------
Confidence 48999999999999999999998864 3444455555556667777665 468999998321100
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~il 219 (330)
..+++.|..++ ..+++++|++++
T Consensus 276 --------------------------------------------------------~~~~e~~~~~~~~~~i~~ad~vil 299 (472)
T PRK03003 276 --------------------------------------------------------ASGHEYYASLRTHAAIEAAEVAVV 299 (472)
T ss_pred --------------------------------------------------------cchHHHHHHHHHHHHHhcCCEEEE
Confidence 01124454443 235789999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+++++. ++..+.. .+.|+|+|+||+|+..... .....++...........+++++||+
T Consensus 300 V~Da~~~~s~~~~~--~~~~~~~--~~~piIiV~NK~Dl~~~~~----------~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 300 LIDASEPISEQDQR--VLSMVIE--AGRALVLAFNKWDLVDEDR----------RYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred EEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCChhH----------HHHHHHHHHHhcccCCCCCEEEEECC
Confidence 99999999988875 5555443 4789999999999975311 11111222222222223589999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+.+.+-
T Consensus 366 ~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 366 TGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987663
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=4.1e-24 Score=176.60 Aligned_cols=152 Identities=21% Similarity=0.241 Sum_probs=111.9
Q ss_pred eEEEeecCCCceeEEEEeeccCC-CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|+++|++|||||||+++|.... +...+.||++..+.. +....+.+.+|||+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~---~~~~~~~~~l~Dt~G~---------------------- 55 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES---FEKGNLSFTAFDMSGQ---------------------- 55 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE---EEECCEEEEEEECCCC----------------------
Confidence 58999999999999999999876 466778888744322 2234566777777777
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++...+..+++++|++++|||+
T Consensus 56 ---------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~D~ 78 (162)
T cd04157 56 ---------------------------------------------------------GKYRGLWEHYYKNIQGIIFVIDS 78 (162)
T ss_pred ---------------------------------------------------------HhhHHHHHHHHccCCEEEEEEeC
Confidence 55556666778899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc----CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH---HHH-HhCCeeEEE
Q psy9997 224 VSPSSFENVKEKWVPEITHH----CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK---LAK-ELKAVKYVE 295 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~----~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~~~~~~e 295 (330)
+++.+|..+. .|+..+.+. ..++|+++|+||+|+.... ..++... +.. ....+.+++
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 79 SDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDLPDAL--------------TAVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred CcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccccCCC--------------CHHHHHHHhCCccccCceEEEEE
Confidence 9999998887 677766543 1479999999999996531 1122111 111 111246899
Q ss_pred EeeccCCCHHHHHHHHHH
Q psy9997 296 CSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~ 313 (330)
+||++|.|++++|+++.+
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 999999999999999864
No 118
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.7e-23 Score=198.53 Aligned_cols=170 Identities=23% Similarity=0.247 Sum_probs=113.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+|++++|.+|+|||||+++++++.. ...+..|..+.+...+..++. .+.+|||+|.+++.....
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~----------- 238 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTE----------- 238 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchh-----------
Confidence 47999999999999999999998753 344555555555555555554 678899999854332210
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC-ccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP-LSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~-~~~~~~d~~il 219 (330)
+.|.|...+. ..++.+|++++
T Consensus 239 ----------------------------------------------------------~~e~~~~~~~~~~~~~ad~~il 260 (429)
T TIGR03594 239 ----------------------------------------------------------GVEKYSVLRTLKAIERADVVLL 260 (429)
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHHHHhCCEEEE
Confidence 0033332222 25788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|++++.+..+.. ++..+.. .+.|+++|+||+|+........ ...++........+..+++++||+
T Consensus 261 V~D~~~~~~~~~~~--~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~vi~~SA~ 327 (429)
T TIGR03594 261 VLDATEGITEQDLR--IAGLILE--AGKALVIVVNKWDLVKDEKTRE---------EFKKELRRKLPFLDFAPIVFISAL 327 (429)
T ss_pred EEECCCCccHHHHH--HHHHHHH--cCCcEEEEEECcccCCCHHHHH---------HHHHHHHHhcccCCCCceEEEeCC
Confidence 99999988887764 4444443 3789999999999972211000 011111111122233689999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+.....
T Consensus 328 ~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 328 TGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877654
No 119
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.89 E-value=4.1e-24 Score=178.13 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=116.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
+|+++|++|||||||++++.++ +...+.||++... ..+.. ..+.+++||++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~----------------------- 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGG----------------------- 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCc-----------------------
Confidence 4789999999999999999876 7788889987642 23333 4567788888887
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.++.++..+++++|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~a~~ii~V~D~s 77 (167)
T cd04161 54 --------------------------------------------------------ANFRGIWVNYYAEAHGLVFVVDSS 77 (167)
T ss_pred --------------------------------------------------------HHHHHHHHHHHcCCCEEEEEEECC
Confidence 556666677889999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEEEeeccC
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVECSALTQ 301 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~ 301 (330)
++.+|+++. .|+..+.... .++|+++|+||+|+.......+ .+....+..+++..+ .+.++++||++|
T Consensus 78 ~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~--------i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 78 DDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNALLGAD--------VIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred chhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH--------HHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999998 7888876543 5799999999999976421110 011111223343332 257888999998
Q ss_pred ------CCHHHHHHHHHH
Q psy9997 302 ------KGLKNVFDEAIL 313 (330)
Q Consensus 302 ------~~v~~~f~~l~~ 313 (330)
.|+++.|++|+.
T Consensus 149 ~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 149 LGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCccccCHHHHHHHHhc
Confidence 899999999874
No 120
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.89 E-value=2.2e-23 Score=174.91 Aligned_cols=153 Identities=21% Similarity=0.307 Sum_probs=114.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
...||+++|++|+|||||++++..+.+.. +.||.+..+.. +..+ .+.+.+||++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~l~D~~G~-------------------- 69 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE-IVYK--NIRFLMWDIGGQ-------------------- 69 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE-EEEC--CeEEEEEECCCC--------------------
Confidence 46899999999999999999999888765 56777766532 2232 466777777777
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..+++++|++++||
T Consensus 70 -----------------------------------------------------------~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 70 -----------------------------------------------------------ESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred -----------------------------------------------------------HHHHHHHHHHhhcCCEEEEEE
Confidence 566666677788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHH----HHhCCeeEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLA----KELKAVKYV 294 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~----~~~~~~~~~ 294 (330)
|++++++|.... .++..+.+.. .++|+++|+||+|+... ...++ .+.+. +..+ ++++
T Consensus 91 D~s~~~~~~~~~-~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--------------~~~~~i~~~l~~~~~~~~~-~~~~ 154 (174)
T cd04153 91 DSTDRERLPLTK-EELYKMLAHEDLRKAVLLVLANKQDLKGA--------------MTPAEISESLGLTSIRDHT-WHIQ 154 (174)
T ss_pred ECCCHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCc-eEEE
Confidence 999999998887 5555554332 57999999999998642 22222 22221 2233 5799
Q ss_pred EEeeccCCCHHHHHHHHHH
Q psy9997 295 ECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~ 313 (330)
++||++|.|++++|+.+..
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 9999999999999999864
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.89 E-value=5.2e-24 Score=175.70 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=109.1
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++++|||||++++..+.+. .+.||++..+. . ++.....+++|||+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~----------------------- 53 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-T--VTYKNLKFQVWDLGGQ----------------------- 53 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-E--EEECCEEEEEEECCCC-----------------------
Confidence 6899999999999999999887765 35677665443 2 2234566777887777
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...++.+++.+|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~~~~ii~v~d~~ 77 (158)
T cd04151 54 --------------------------------------------------------TSIRPYWRCYYSNTDAIIYVVDST 77 (158)
T ss_pred --------------------------------------------------------HHHHHHHHHHhcCCCEEEEEEECC
Confidence 556666677888999999999999
Q ss_pred ChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-HHH----HHhCCeeEEEEee
Q psy9997 225 SPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-KLA----KELKAVKYVECSA 298 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~~e~Sa 298 (330)
++.++....+.|...+... ..+.|+++|+||+|+... ...++.. .+. ...+ .+++++||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~~~~~Sa 142 (158)
T cd04151 78 DRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA--------------LSEAEISEKLGLSELKDRT-WSIFKTSA 142 (158)
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC--------------CCHHHHHHHhCccccCCCc-EEEEEeec
Confidence 9999887763343333322 257999999999999643 1112221 111 1112 46999999
Q ss_pred ccCCCHHHHHHHHHH
Q psy9997 299 LTQKGLKNVFDEAIL 313 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~ 313 (330)
++|.|++++|+++++
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999875
No 122
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=6e-23 Score=178.43 Aligned_cols=180 Identities=31% Similarity=0.454 Sum_probs=140.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+..+||+++|+.|+|||||+++|.++.|...+.+|++..+.. .....+..+.+.+|||+|+
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq------------------ 64 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ------------------ 64 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH------------------
Confidence 445899999999999999999999999999999999888855 5555555777888888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
++++.+++.++..++++++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 65 -------------------------------------------------------------EEYRSLRPEYYRGANGILI 83 (219)
T ss_pred -------------------------------------------------------------HHHHHHHHHHhcCCCEEEE
Confidence 7777778888888999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh--CCeeEEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL--KAVKYVEC 296 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~ 296 (330)
|||.++..++.++...|...+.... ...|+++|+||+|+..+............+....+.....+... ....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999996666666669999999887 47999999999999987544433322222344444444444433 12349999
Q ss_pred eec--cCCCHHHHHHHHHHHhcCCC
Q psy9997 297 SAL--TQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 297 Sa~--~~~~v~~~f~~l~~~i~~~~ 319 (330)
||+ .+.+++++|..+++.+.+..
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999997543
No 123
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.89 E-value=3.9e-23 Score=170.58 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=111.5
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|.+..+.. +.||.+..+. .+.. +..+.+.+||++|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~----------------------- 54 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQ----------------------- 54 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCC-----------------------
Confidence 68999999999999999999988764 3577664432 2222 34467777777777
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...+..+++.+|++++|||++
T Consensus 55 --------------------------------------------------------~~~~~~~~~~~~~~~~iv~v~D~~ 78 (160)
T cd04156 55 --------------------------------------------------------EKMRTVWKCYLENTDGLVYVVDSS 78 (160)
T ss_pred --------------------------------------------------------HhHHHHHHHHhccCCEEEEEEECC
Confidence 555555666788899999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH------HHHHHhCCeeEEEE
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE------KLAKELKAVKYVEC 296 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~e~ 296 (330)
++.++..+. .|+.++.+.. .+.|+++|+||+|+... ...++.. .++...+ ++++++
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~-~~~~~~ 142 (160)
T cd04156 79 DEARLDESQ-KELKHILKNEHIKGVPVVLLANKQDLPGA--------------LTAEEITRRFKLKKYCSDRD-WYVQPC 142 (160)
T ss_pred cHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECcccccC--------------cCHHHHHHHcCCcccCCCCc-EEEEec
Confidence 999999987 6776665432 58999999999999642 1122222 1222222 579999
Q ss_pred eeccCCCHHHHHHHHHH
Q psy9997 297 SALTQKGLKNVFDEAIL 313 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~ 313 (330)
||++|.|++++|+.+.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998864
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=7.8e-23 Score=173.83 Aligned_cols=156 Identities=23% Similarity=0.375 Sum_probs=117.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+..||+++|++|||||||++++.++.+. .+.||.+... ..+.+++ ..+.+||++|+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~------------------- 73 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGH------------------- 73 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCC-------------------
Confidence 45789999999999999999999988763 5667765433 2334443 45667777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 74 ------------------------------------------------------------~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 74 ------------------------------------------------------------EQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 55555556678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----------
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL---------- 288 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------- 288 (330)
+|++++.+|.... .|+..+.+.. .+.|+++|+||+|+.. .+..++++++.+..
T Consensus 94 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~pvivv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 94 VDAADPERFQESK-EELDSLLSDEELANVPFLILGNKIDLPG--------------AVSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred EECCcHHHHHHHH-HHHHHHHcCccccCCCEEEEEeCCCCCC--------------CcCHHHHHHHhCcccccccccccc
Confidence 9999999998887 6666665432 5799999999999953 34555665555421
Q ss_pred -----CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 289 -----KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 289 -----~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
....++++||++|.|++++|+++...
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 12569999999999999999999764
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=1.2e-22 Score=168.78 Aligned_cols=152 Identities=22% Similarity=0.328 Sum_probs=110.7
Q ss_pred eEEEeecCCCceeEEEEeeccCC------CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
+|+++|++|+|||||++++.... +...+.||++..+. .+..+ ...+.+|||+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~----------------- 60 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQ----------------- 60 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCC-----------------
Confidence 58999999999999999987642 23344556555543 23333 456667777776
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++.+|+++
T Consensus 61 --------------------------------------------------------------~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 61 --------------------------------------------------------------ESLRSLWDKYYAECHAII 78 (167)
T ss_pred --------------------------------------------------------------hhhHHHHHHHhCCCCEEE
Confidence 555566666788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh------CC
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL------KA 290 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~ 290 (330)
+|+|.+++++++... .|+..+.+.. .+.|+++|+||+|+... ...++...+.+.. ..
T Consensus 79 ~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 79 YVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANKQDLPDA--------------LSVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred EEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEccccccC--------------CCHHHHHHHhccccccccCCc
Confidence 999999999999987 6776665542 57999999999998643 3334444443321 12
Q ss_pred eeEEEEeeccCCCHHHHHHHHHH
Q psy9997 291 VKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.+++++||++|.|++++|+++..
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 58999999999999999999864
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.88 E-value=1.6e-22 Score=166.64 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=113.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||++++++.. ...+.+|.+..+.. +.++ ...+.+||++|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~----------------------- 53 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET-VEYK--NVSFTVWDVGGQ----------------------- 53 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE-EEEC--CEEEEEEECCCC-----------------------
Confidence 68999999999999999999887 44566666654432 2222 456777777776
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
+.+...+..+++.+|++++|||++
T Consensus 54 --------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~D~~ 77 (158)
T cd00878 54 --------------------------------------------------------DKIRPLWKHYYENTNGIIFVVDSS 77 (158)
T ss_pred --------------------------------------------------------hhhHHHHHHHhccCCEEEEEEECC
Confidence 555566677788999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH----hCCeeEEEEee
Q psy9997 225 SPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE----LKAVKYVECSA 298 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa 298 (330)
+++++.... .|+..+.... .+.|+++|+||+|+... ...++..+.... ...++++++||
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 78 DRERIEEAK-EELHKLLNEEELKGVPLLIFANKQDLPGA--------------LSVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred CHHHHHHHH-HHHHHHHhCcccCCCcEEEEeeccCCccc--------------cCHHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999987 6766655532 58999999999999753 123333333221 12368999999
Q ss_pred ccCCCHHHHHHHHHH
Q psy9997 299 LTQKGLKNVFDEAIL 313 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~ 313 (330)
++|.|++++|+.++.
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999864
No 127
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.86 E-value=2.1e-22 Score=162.99 Aligned_cols=140 Identities=24% Similarity=0.294 Sum_probs=102.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
||+++|++|||||||+++|.+..+ .+.+|.+..+. . .+|||+|+.. ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~------~-----~~iDt~G~~~---~~---------------- 49 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN------D-----GAIDTPGEYV---EN---------------- 49 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc------C-----eeecCchhhh---hh----------------
Confidence 899999999999999999998875 34455433221 1 5788888710 00
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
++.+..+.+ .++++|++++|||++
T Consensus 50 -------------------------------------------------------~~~~~~~~~-~~~~ad~vilv~d~~ 73 (142)
T TIGR02528 50 -------------------------------------------------------RRLYSALIV-TAADADVIALVQSAT 73 (142)
T ss_pred -------------------------------------------------------HHHHHHHHH-HhhcCCEEEEEecCC
Confidence 022333333 478999999999999
Q ss_pred ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCH
Q psy9997 225 SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 304 (330)
++.++... .|...+ ..|+++|+||+|+.. +....+++.++++..+..+++++||++|.|+
T Consensus 74 ~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 74 DPESRFPP--GFASIF-----VKPVIGLVTKIDLAE-------------ADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred CCCcCCCh--hHHHhc-----cCCeEEEEEeeccCC-------------cccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 99998763 354432 249999999999964 3345677788888877558999999999999
Q ss_pred HHHHHHHH
Q psy9997 305 KNVFDEAI 312 (330)
Q Consensus 305 ~~~f~~l~ 312 (330)
+++|+++.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 128
>KOG0094|consensus
Probab=99.86 E-value=2e-22 Score=164.17 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=106.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++-+||++|||.+|||||||.||+++.|...|.+||+-.| +++..+.+.++.+++|||++++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE----------------- 82 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------------- 82 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------------
Confidence 3568999999999999999999999999999999998555 8999999999999999999944
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+| +.+.++|||+++++++||| ........+..
T Consensus 83 -------RF------------------------------------rslipsY~Rds~vaviVyD-----it~~~Sfe~t~ 114 (221)
T KOG0094|consen 83 -------RF------------------------------------RSLIPSYIRDSSVAVIVYD-----ITDRNSFENTS 114 (221)
T ss_pred -------HH------------------------------------hhhhhhhccCCeEEEEEEe-----ccccchHHHHH
Confidence 44 6678899999999999998 44444556778
Q ss_pred CcceeeeccCCC-cccccccceeeccCCCcccc
Q psy9997 160 GWFWFISTEHSP-PMKLHTLGFITNINPGWVRD 191 (330)
Q Consensus 160 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~ 191 (330)
.|+......... ...+.++|+|+|+...+.+.
T Consensus 115 kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs 147 (221)
T KOG0094|consen 115 KWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS 147 (221)
T ss_pred HHHHHHHhccCCCceEEEEEcccccccchhhhh
Confidence 898888776554 57889999999997655443
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.86 E-value=5.4e-22 Score=167.97 Aligned_cols=156 Identities=19% Similarity=0.287 Sum_probs=114.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|+|||||++++.++.+. .+.||.+.... .+.++ .+.+.+||++|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~------------------- 71 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE-ELAIG--NIKFTTFDLGGH------------------- 71 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE-EEEEC--CEEEEEEECCCC-------------------
Confidence 45689999999999999999999988764 34555543321 22222 356667777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 72 ------------------------------------------------------------~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 72 ------------------------------------------------------------QQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 55556666788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----------H
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----------E 287 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~ 287 (330)
+|++++.++.... .++..+.+. ..+.|+++|+||+|+... ++.++..+... .
T Consensus 92 vD~~~~~~~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~--------------~~~~~i~~~l~l~~~~~~~~~~~ 156 (184)
T smart00178 92 VDAYDKERFAESK-RELDALLSDEELATVPFLILGNKIDAPYA--------------ASEDELRYALGLTNTTGSKGKVG 156 (184)
T ss_pred EECCcHHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCC--------------CCHHHHHHHcCCCcccccccccC
Confidence 9999999999887 566665443 257999999999998532 33333332221 1
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+...++++||++|.|+++++++++.+
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 123569999999999999999999865
No 130
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=3.2e-21 Score=184.56 Aligned_cols=168 Identities=20% Similarity=0.250 Sum_probs=108.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|.+|+|||||+++++++.. ......|..+.....+..++ ..+.+|||+|..+......
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~----------- 239 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTE----------- 239 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhh-----------
Confidence 48999999999999999999997642 33344444444444444444 3467899999743221110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC-ccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP-LSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~-~~~~~~d~~il 219 (330)
+.+.|...+. .+++.+|++++
T Consensus 240 ----------------------------------------------------------~~e~~~~~~~~~~~~~ad~~il 261 (435)
T PRK00093 240 ----------------------------------------------------------GVEKYSVIRTLKAIERADVVLL 261 (435)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHCCEEEE
Confidence 0133332221 25678999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|++++.+.++.. ++..+.. .+.|+++|+||+|+..... . ..+ .++...........+++++||+
T Consensus 262 ViD~~~~~~~~~~~--i~~~~~~--~~~~~ivv~NK~Dl~~~~~-~--------~~~-~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 262 VIDATEGITEQDLR--IAGLALE--AGRALVIVVNKWDLVDEKT-M--------EEF-KKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred EEeCCCCCCHHHHH--HHHHHHH--cCCcEEEEEECccCCCHHH-H--------HHH-HHHHHHhcccccCCCEEEEeCC
Confidence 99999988877764 4444433 3689999999999974211 0 011 1112112222234689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++|+.+....
T Consensus 328 ~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 328 TGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999877644
No 131
>KOG1673|consensus
Probab=99.86 E-value=4.1e-21 Score=150.56 Aligned_cols=172 Identities=26% Similarity=0.469 Sum_probs=146.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..-.+||-++||+.+|||||+-+|.++.+.+++..+.|.++. +++.+.+..+.+.|||..|+
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~----------------- 79 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQ----------------- 79 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCc-----------------
Confidence 345689999999999999999999999999999999999985 59999999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++....+...+++-+++
T Consensus 80 --------------------------------------------------------------~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 80 --------------------------------------------------------------REFINMLPIACKDSVAIL 97 (205)
T ss_pred --------------------------------------------------------------HhhhccCceeecCcEEEE
Confidence 667777788889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
++||++.+++...+. .|+++.+......--|+||+|.|+.-.-+ .+.+.++ ..+++.+|+..++ +.|.+|+
T Consensus 98 FmFDLt~r~TLnSi~-~WY~QAr~~NktAiPilvGTKyD~fi~lp------~e~Q~~I-~~qar~YAk~mnA-sL~F~St 168 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIK-EWYRQARGLNKTAIPILVGTKYDLFIDLP------PELQETI-SRQARKYAKVMNA-SLFFCST 168 (205)
T ss_pred EEEecCchHHHHHHH-HHHHHHhccCCccceEEeccchHhhhcCC------HHHHHHH-HHHHHHHHHHhCC-cEEEeec
Confidence 999999999999999 89999988876666688999999875311 1111222 3568899999985 8889999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..+.||+++|.-++.++++.+
T Consensus 169 s~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 169 SHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred cccccHHHHHHHHHHHHhCCc
Confidence 999999999999999998764
No 132
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.86 E-value=5.2e-22 Score=162.66 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=113.6
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
|+++|++|+|||||++++.+..|...+.||.+..+.. +... .+.+.+||++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~------------------------ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQ------------------------ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCC------------------------
Confidence 7899999999999999999999999999988766653 2222 367888888887
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~ 225 (330)
+.+...+..+++.+|++++|+|+++
T Consensus 55 -------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 55 -------------------------------------------------------PRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred -------------------------------------------------------HhHHHHHHHHHhcCCEEEEEEECCC
Confidence 5555566667889999999999999
Q ss_pred hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeEEEEee
Q psy9997 226 PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKYVECSA 298 (330)
Q Consensus 226 ~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa 298 (330)
+.++.... .|+..+... ..++|+++|+||+|+.... ..++..... ... .++++++||
T Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~Sa 143 (159)
T cd04159 80 RTALEAAK-NELHDLLEKPSLEGIPLLVLGNKNDLPGAL--------------SVDELIEQMNLKSITDR-EVSCYSISC 143 (159)
T ss_pred HHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCCc--------------CHHHHHHHhCcccccCC-ceEEEEEEe
Confidence 99998887 555555432 2578999999999986531 111111111 112 257999999
Q ss_pred ccCCCHHHHHHHHHH
Q psy9997 299 LTQKGLKNVFDEAIL 313 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~ 313 (330)
++|.|++++|+++.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999864
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=6.2e-21 Score=160.41 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=70.9
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.+......+++.+|++++|||+++..+++... .|.... . .++|+++|+||+|+... + ..+.
T Consensus 78 ~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~-~~~~~~-~--~~~~iiiv~NK~Dl~~~------------~--~~~~ 139 (179)
T cd01890 78 VDFSYEVSRSLAACEGALLLVDATQGVEAQTLA-NFYLAL-E--NNLEIIPVINKIDLPSA------------D--PERV 139 (179)
T ss_pred hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHH-HHHHHH-H--cCCCEEEEEECCCCCcC------------C--HHHH
Confidence 555555566788899999999999887777765 454322 2 47899999999998542 1 1223
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
..++++.++. ..++++||++|.|++++|+.+...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 KQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 4456666552 2489999999999999999998875
No 134
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=6.4e-21 Score=191.86 Aligned_cols=170 Identities=22% Similarity=0.193 Sum_probs=115.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|||||||+++++++.. ...+.+|..+.+...+.+++.. +.+|||+|..+...
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~-------------- 513 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQH-------------- 513 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcc--------------
Confidence 37999999999999999999999874 4566667666666667777765 45899999732100
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~il 219 (330)
...|.+.|..++ ...++.+|++++
T Consensus 514 -------------------------------------------------------~~~~~e~~~~~r~~~~i~~advvil 538 (712)
T PRK09518 514 -------------------------------------------------------KLTGAEYYSSLRTQAAIERSELALF 538 (712)
T ss_pred -------------------------------------------------------cchhHHHHHHHHHHHHhhcCCEEEE
Confidence 001124444333 234688999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|+++..+++++. ++..+.. .+.|+++|+||+|+..... .....++...........+++++||+
T Consensus 539 ViDat~~~s~~~~~--i~~~~~~--~~~piIiV~NK~DL~~~~~----------~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 539 LFDASQPISEQDLK--VMSMAVD--AGRALVLVFNKWDLMDEFR----------RQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred EEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEEchhcCChhH----------HHHHHHHHHHhccCCCCCCEEEEECC
Confidence 99999998888875 4444433 3789999999999965311 00111111111111122467999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+.+.+.+
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998887654
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.84 E-value=7.3e-21 Score=158.22 Aligned_cols=87 Identities=22% Similarity=0.222 Sum_probs=67.5
Q ss_pred CCEEEEEEEcCChhhH--hhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 214 TDVFLVCFSVVSPSSF--ENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~--~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
+|++++|+|++++.++ +... .|+..+.....+.|+++|+||+|+... +.+.. ...+++..+ .
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~~~------------~~~~~--~~~~~~~~~-~ 143 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLLTF------------EDLSE--IEEEEELEG-E 143 (168)
T ss_pred cCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccCch------------hhHHH--HHHhhhhcc-C
Confidence 5899999999988764 5554 688888766668999999999999653 22221 445555443 6
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+++++||++|.|++++|+++.+.++
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 144 EVLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred ceEEEEecccCCHHHHHHHHHHHhC
Confidence 8999999999999999999998764
No 136
>KOG3883|consensus
Probab=99.84 E-value=9.2e-20 Score=142.66 Aligned_cols=104 Identities=23% Similarity=0.364 Sum_probs=91.7
Q ss_pred ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH
Q psy9997 204 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG 281 (330)
Q Consensus 204 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 281 (330)
..+...++.-+|+++|||+..|++||+.+. .+-.+|.++- ..+||++.|||+|+.+. +++..+.+
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rdr~~p------------~~vd~d~A 141 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRDRAEP------------REVDMDVA 141 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhhcccc------------hhcCHHHH
Confidence 456677888899999999999999999998 6667777654 46899999999999876 89999999
Q ss_pred HHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 282 ~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+.||+.-. +..+|++|++.-.+-+.|..+..++.+++++
T Consensus 142 ~~Wa~rEk-vkl~eVta~dR~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 142 QIWAKREK-VKLWEVTAMDRPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred HHHHhhhh-eeEEEEEeccchhhhhHHHHHHHhccCCccc
Confidence 99999876 8999999999999999999999999887654
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=1.5e-20 Score=156.58 Aligned_cols=90 Identities=24% Similarity=0.275 Sum_probs=70.6
Q ss_pred ccCCCEEEEEEEcCCh-hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSP-SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
+..+|++++|+|++++ ++++++. .|..++.... .+.|+++|+||+|+... .. ..+....+..
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------------~~-~~~~~~~~~~ 141 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDE------------EE-LFELLKELLK 141 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCc------------hh-hHHHHHHHHh
Confidence 3469999999999999 8999987 8888887654 36899999999999653 22 2334445555
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.....+++++||+++.|++++|+.+.+.
T Consensus 142 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 142 ELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 5323689999999999999999998764
No 138
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.83 E-value=1.7e-20 Score=157.47 Aligned_cols=157 Identities=22% Similarity=0.340 Sum_probs=117.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|..|+||||+++++..+.+.. ..||.|.... .+.. ....+.+||.+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~-~i~~--~~~~~~~~d~gG~------------------- 68 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE-EIKY--KGYSLTIWDLGGQ------------------- 68 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE-EEEE--TTEEEEEEEESSS-------------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc-eeee--CcEEEEEEecccc-------------------
Confidence 567999999999999999999998766433 5666654432 2333 3455677777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
..++..++.++.++|++|+|
T Consensus 69 ------------------------------------------------------------~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 69 ------------------------------------------------------------ESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp ------------------------------------------------------------GGGGGGGGGGHTTESEEEEE
T ss_pred ------------------------------------------------------------ccccccceeeccccceeEEE
Confidence 66777888888999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH-----hCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE-----LKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~ 293 (330)
.|.++++.+.... ..+..+... ..+.|+++++||+|+... ...++....... ...+.+
T Consensus 89 vDssd~~~l~e~~-~~L~~ll~~~~~~~~piLIl~NK~D~~~~--------------~~~~~i~~~l~l~~l~~~~~~~v 153 (175)
T PF00025_consen 89 VDSSDPERLQEAK-EELKELLNDPELKDIPILILANKQDLPDA--------------MSEEEIKEYLGLEKLKNKRPWSV 153 (175)
T ss_dssp EETTGGGGHHHHH-HHHHHHHTSGGGTTSEEEEEEESTTSTTS--------------STHHHHHHHTTGGGTTSSSCEEE
T ss_pred Eecccceeecccc-cchhhhcchhhcccceEEEEeccccccCc--------------chhhHHHhhhhhhhcccCCceEE
Confidence 9999999888887 444554443 258999999999999754 333443332221 123679
Q ss_pred EEEeeccCCCHHHHHHHHHHHh
Q psy9997 294 VECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+.+||.+|+|+.+.|++|..++
T Consensus 154 ~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 154 FSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHhcC
Confidence 9999999999999999998865
No 139
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=1.6e-20 Score=156.98 Aligned_cols=152 Identities=21% Similarity=0.289 Sum_probs=108.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+|++++|++|+|||||++++.+..+. .+.||.+..+. .+..+ ...+.+||++|+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~-~i~~~--~~~~~~~D~~G~------------------- 68 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK-TVQSD--GFKLNVWDIGGQ------------------- 68 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEEC--CEEEEEEECCCC-------------------
Confidence 45789999999999999999999987653 35566653332 23333 245667777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++.+|++++|
T Consensus 69 ------------------------------------------------------------~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 69 ------------------------------------------------------------RAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred ------------------------------------------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 44545555667889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-------Ce
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-------AV 291 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~ 291 (330)
+|++++.++.... .|+..+... ..++|+++++||+|+.... ..++ +.+..+ ..
T Consensus 89 ~D~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~---i~~~l~~~~~~~~~~ 150 (173)
T cd04155 89 IDSADKKRLEEAG-AELVELLEEEKLAGVPVLVFANKQDLATAA--------------PAEE---IAEALNLHDLRDRTW 150 (173)
T ss_pred EeCCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECCCCccCC--------------CHHH---HHHHcCCcccCCCeE
Confidence 9999999998877 555554433 2479999999999996531 1111 222222 13
Q ss_pred eEEEEeeccCCCHHHHHHHHHH
Q psy9997 292 KYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.++++||++|.|++++|+++++
T Consensus 151 ~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 151 HIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEeECCCCCCHHHHHHHHhc
Confidence 5789999999999999999875
No 140
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=2.3e-20 Score=152.35 Aligned_cols=156 Identities=38% Similarity=0.562 Sum_probs=116.4
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|+|||||++++....+...+.++.+..+.. .+..++..+.+.+||++|++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~------------------- 61 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE------------------- 61 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc-------------------
Confidence 3799999999999999999999998877887888766655 46677766888889998883
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.+...+..+++++++++.++
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 62 ------------------------------------------------------------DYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred ------------------------------------------------------------cchHHHHHHHhhhhEEEEEE
Confidence 33344444556677777777
Q ss_pred EcCCh-hhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSP-SSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~-~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+... .++.+..+.|+..+..... +.|+++|+||+|+... + .. ++........+..+++++||+
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~-~~-~~~~~~~~~~~~~~~~~~sa~ 147 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDA------------K-LK-THVAFLFAKLNGEPIIPLSAE 147 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcc------------h-hh-HHHHHHHhhccCCceEEeecC
Confidence 77766 6666655456666665554 8999999999999764 2 22 333333444444689999999
Q ss_pred cCCCHHHHHHHH
Q psy9997 300 TQKGLKNVFDEA 311 (330)
Q Consensus 300 ~~~~v~~~f~~l 311 (330)
+|.|++++|+.+
T Consensus 148 ~~~gv~~~~~~l 159 (161)
T TIGR00231 148 TGKNIDSAFKIV 159 (161)
T ss_pred CCCCHHHHHHHh
Confidence 999999999875
No 141
>KOG0095|consensus
Probab=99.83 E-value=1.8e-21 Score=151.57 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=105.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
|||+++|.+|||||||++||..+.|++-.-.|++..| .+++.+.+..+++++||+++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag---------------------- 65 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG---------------------- 65 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc----------------------
Confidence 7999999999999999999999999999999998555 88999999999999999998
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+++| ++++.+|||.|++.+++||.+ . -...+-+++|+
T Consensus 66 --qerf------------------------------------rsitqsyyrsahalilvydis--c---qpsfdclpewl 102 (213)
T KOG0095|consen 66 --QERF------------------------------------RSITQSYYRSAHALILVYDIS--C---QPSFDCLPEWL 102 (213)
T ss_pred --hHHH------------------------------------HHHHHHHhhhcceEEEEEecc--c---CcchhhhHHHH
Confidence 4444 667789999999999999933 3 33445689999
Q ss_pred eeeeccCCCcccccccceeeccCCCccc
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVR 190 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 190 (330)
.+++.......-..++|+|+|+..-+.+
T Consensus 103 reie~yan~kvlkilvgnk~d~~drrev 130 (213)
T KOG0095|consen 103 REIEQYANNKVLKILVGNKIDLADRREV 130 (213)
T ss_pred HHHHHHhhcceEEEeeccccchhhhhhh
Confidence 9999998888888999999999654433
No 142
>KOG0073|consensus
Probab=99.82 E-value=6.3e-20 Score=145.38 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=122.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.++++|+++|..|+|||+++++|.+.. .+...||.|.+..... .+.+.+++||.+||
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~---~~~~~L~iwDvGGq------------------- 70 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE---YKGYTLNIWDVGGQ------------------- 70 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE---ecceEEEEEEcCCc-------------------
Confidence 458999999999999999999998877 6666777776654422 23466777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
...+..|+.||+++||+|+|
T Consensus 71 ------------------------------------------------------------~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 71 ------------------------------------------------------------KTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred ------------------------------------------------------------chhHHHHHHhhhccCeEEEE
Confidence 66667788899999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC-HHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS-FEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|.+|+..|+...+.+-..+... ....|+++++||.|+..+-+. ..+. .-+...+++... ++.+.|||
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~---------~~i~~~~~L~~l~ks~~-~~l~~cs~ 160 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL---------EEISKALDLEELAKSHH-WRLVKCSA 160 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH---------HHHHHhhCHHHhccccC-ceEEEEec
Confidence 99999999999884333333322 256899999999999854111 1111 112334555555 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
.+|+++.+-+++++..+.+
T Consensus 161 ~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999988865
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=3e-20 Score=153.55 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=62.9
Q ss_pred cccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~ 277 (330)
+++......++.++|++++|+|+++ +++++.+. + +.. ....|+++|+||+|+..... ....
T Consensus 62 ~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~--~---~~~-~~~~~~ilv~NK~Dl~~~~~----------~~~~ 125 (164)
T cd04171 62 EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE--I---LEL-LGIKRGLVVLTKADLVDEDW----------LELV 125 (164)
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH--H---HHH-hCCCcEEEEEECccccCHHH----------HHHH
Confidence 5554444456778999999999987 44544443 1 211 12349999999999965310 1112
Q ss_pred HHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 278 FEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 278 ~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.++..++.+.. ...+++++||++|.|++++|+.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 126 EEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 23444444432 2368999999999999999998753
No 144
>KOG4423|consensus
Probab=99.81 E-value=2e-21 Score=156.85 Aligned_cols=119 Identities=24% Similarity=0.347 Sum_probs=99.2
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCch
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAP 263 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~ 263 (330)
.++.++||++||+++..+...+|+.+.+.++|||+++..+|+.+. .|.+++.... ..+|+++.+||||....+
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankCd~e~~a- 151 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA- 151 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchhccChHh-
Confidence 345667777777999999999999999999999999999999998 9999987754 368999999999997642
Q ss_pred hhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 264 TLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 264 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..-......++++++|...++|+|+|.+.|++|+-..++.+++-+.
T Consensus 152 ----------~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 152 ----------KNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred ----------hhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 1112355667888888788999999999999999999999997554
No 145
>KOG0096|consensus
Probab=99.81 E-value=5.7e-20 Score=149.05 Aligned_cols=162 Identities=25% Similarity=0.384 Sum_probs=130.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCc-eeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..|++++|+.|.|||++++|+..++|.-.|.+|+|......+...+. .+.+..|||+|+|.
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk------------------ 71 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK------------------ 71 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccccee------------------
Confidence 57999999999999999999999999999999999888775544333 57888888888854
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+..++.-+|-++.+.|++|
T Consensus 72 -------------------------------------------------------------~gglrdgyyI~~qcAiimF 90 (216)
T KOG0096|consen 72 -------------------------------------------------------------KGGLRDGYYIQGQCAIIMF 90 (216)
T ss_pred -------------------------------------------------------------ecccccccEEecceeEEEe
Confidence 4444555555678888899
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++.+-++.++. .|.+++.+.+.++||+++|||.|.... ++. .....+-+..+ +.|+++||+++
T Consensus 91 dVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r-------------~~k-~k~v~~~rkkn-l~y~~iSaksn 154 (216)
T KOG0096|consen 91 DVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKAR-------------KVK-AKPVSFHRKKN-LQYYEISAKSN 154 (216)
T ss_pred eeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceecccc-------------ccc-cccceeeeccc-ceeEEeecccc
Confidence 999999999999 999999999999999999999999753 211 11223444444 78999999999
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy9997 302 KGLKNVFDEAILAALEPP 319 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~~~ 319 (330)
.|++.-|.++.+++.-.+
T Consensus 155 ~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 155 YNFERPFLWLARKLTGDP 172 (216)
T ss_pred cccccchHHHhhhhcCCC
Confidence 999999999999887543
No 146
>KOG0070|consensus
Probab=99.80 E-value=7.3e-19 Score=143.02 Aligned_cols=161 Identities=18% Similarity=0.215 Sum_probs=121.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.++++|+++|-.++||||++.+|..+++... .||+|.+...... +++.+.+||.+||
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y---kn~~f~vWDvGGq------------------ 71 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY---KNISFTVWDVGGQ------------------ 71 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE---cceEEEEEecCCC------------------
Confidence 56789999999999999999999999987666 8888766544111 1455555555555
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
++++.++..|+.+++++|+
T Consensus 72 -------------------------------------------------------------~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 72 -------------------------------------------------------------EKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred -------------------------------------------------------------cccccchhhhccCCcEEEE
Confidence 7777788888889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYV 294 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~ 294 (330)
|.|.+|++-+....+.+...+.... .+.|+++.+||.|+..+ .+..+..+..... ....+.
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--------------ls~~ei~~~L~l~~l~~~~w~iq 156 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--------------LSAAEITNKLGLHSLRSRNWHIQ 156 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--------------CCHHHHHhHhhhhccCCCCcEEe
Confidence 9999999999998855555544433 58999999999999865 2333322222211 124578
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++|.+|+|+.+.++++...+.+
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred eccccccccHHHHHHHHHHHHhc
Confidence 89999999999999999988754
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=7.5e-20 Score=156.94 Aligned_cols=165 Identities=18% Similarity=0.133 Sum_probs=102.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||++++.+..+...+.|+.... ...+... .+.+|||+|......+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~------------- 68 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGV------------- 68 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCcccccccc-------------
Confidence 356899999999999999999999988765555544222 1222222 4788999985111100
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc-CC---CE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP-QT---DV 216 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~-~~---d~ 216 (330)
+...+++++..+..++. .+ ++
T Consensus 69 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (201)
T PRK04213 69 -------------------------------------------------------PKEVQEKIKDEIVRYIEDNADRILA 93 (201)
T ss_pred -------------------------------------------------------CHHHHHHHHHHHHHHHHhhhhhheE
Confidence 00002455554444543 34 45
Q ss_pred EEEEEEcCChhhHhhhhhcchhh--------hhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPE--------ITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~--------i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
+++|.|. .++.++...|... +... ..++|+++|+||+|+... + .+.+.++++
T Consensus 94 vi~v~d~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~------------~---~~~~~~~~~ 155 (201)
T PRK04213 94 AVLVVDG---KSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN------------R---DEVLDEIAE 155 (201)
T ss_pred EEEEEeC---ccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc------------H---HHHHHHHHH
Confidence 5555554 4444332233211 1111 147999999999999653 1 345556666
Q ss_pred HhCC--------eeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 287 ELKA--------VKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 287 ~~~~--------~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.++. .+++++||++| |++++|+.+...+-+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 6652 15899999999 999999999988644
No 148
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.79 E-value=4.8e-20 Score=144.58 Aligned_cols=114 Identities=28% Similarity=0.515 Sum_probs=84.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
||+|+|+.|||||||+++|.+..+. ..+.++.+..+. ....+......+.+||++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~-------------------- 60 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ-------------------- 60 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--------------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--------------------
Confidence 7999999999999999999998876 222233333333 24455555555777777777
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..++..+|++++||
T Consensus 61 -----------------------------------------------------------~~~~~~~~~~~~~~d~~ilv~ 81 (119)
T PF08477_consen 61 -----------------------------------------------------------EEFYSQHQFFLKKADAVILVY 81 (119)
T ss_dssp -----------------------------------------------------------HCHHCTSHHHHHHSCEEEEEE
T ss_pred -----------------------------------------------------------ceecccccchhhcCcEEEEEE
Confidence 555555555688999999999
Q ss_pred EcCChhhHhhhhh--cchhhhhhcCCCCcEEEEEeccC
Q psy9997 222 SVVSPSSFENVKE--KWVPEITHHCQKTPFLLVGTQID 257 (330)
Q Consensus 222 d~~~~~s~~~~~~--~~~~~i~~~~~~~piilV~nK~D 257 (330)
|+++++||+++.+ .|+..+.....++|+++||||.|
T Consensus 82 D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 82 DLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999753 36777777777899999999998
No 149
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=5.4e-19 Score=162.10 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=76.8
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
.++.++++++|+|++++++++++. .|..++..+. .+.|+++|+||+|+... ..+..++.+.+++
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~------------~~~~~~~~~~~~~ 299 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLLDE------------EEEREKRAALELA 299 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccCCc------------hhHHHHHHHHHHH
Confidence 356799999999999988999997 8999988764 37899999999999754 2333344555555
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..+ .+++++||+++.|++++|+.+...+.+.+
T Consensus 300 ~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 300 ALG-GPVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred hcC-CCEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 554 68999999999999999999998876543
No 150
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=7.8e-19 Score=151.01 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=108.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCC--CCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSE--YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.++|+++|++|||||||++++.+..+... +.+|... ....+..++. ..+.+|||+|......-
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~------------- 105 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPH------------- 105 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCH-------------
Confidence 47999999999999999999998874322 2233322 2223334332 36788999997210000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+ -.+.+.... ..+.++|++++|
T Consensus 106 --------------------~-------------------------------------~~~~~~~~~-~~~~~~d~ii~v 127 (204)
T cd01878 106 --------------------Q-------------------------------------LVEAFRSTL-EEVAEADLLLHV 127 (204)
T ss_pred --------------------H-------------------------------------HHHHHHHHH-HHHhcCCeEEEE
Confidence 0 001122111 135679999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
+|++++.++.+.. .|...+.... .+.|+++|+||+|+.... ... .++...+ .+++++||+
T Consensus 128 ~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~~~------------~~~-----~~~~~~~-~~~~~~Sa~ 188 (204)
T cd01878 128 VDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLDDE------------ELE-----ERLEAGR-PDAVFISAK 188 (204)
T ss_pred EECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCChH------------HHH-----HHhhcCC-CceEEEEcC
Confidence 9999999998876 6776666543 468999999999996541 111 3334433 689999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++|+.+...+
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999987653
No 151
>KOG0393|consensus
Probab=99.77 E-value=2.7e-19 Score=149.14 Aligned_cols=120 Identities=53% Similarity=0.936 Sum_probs=103.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+|+++|||++||||||+..|..+.|+.+|.||++++|+..+.++ ++++.+.+|||++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG------------------- 62 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAG------------------- 62 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCC-------------------
Confidence 46799999999999999999999999999999999999999999995 9999999999998
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+++| +.+++..|+++|.++++|+ ..++....+-..
T Consensus 63 ---------qedY--------------------------------DrlRplsY~~tdvfl~cfs----v~~p~S~~nv~~ 97 (198)
T KOG0393|consen 63 ---------QEDY--------------------------------DRLRPLSYPQTDVFLLCFS----VVSPESFENVKS 97 (198)
T ss_pred ---------Cccc--------------------------------ccccccCCCCCCEEEEEEE----cCChhhHHHHHh
Confidence 3333 3367779999999999997 445555556678
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|++++ .+++|..|+.++|++.|+.
T Consensus 98 kW~pEi-~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 98 KWIPEI-KHHCPNVPIILVGTKADLR 122 (198)
T ss_pred hhhHHH-HhhCCCCCEEEEeehHHhh
Confidence 887744 3566999999999999995
No 152
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.76 E-value=1.7e-18 Score=139.68 Aligned_cols=152 Identities=41% Similarity=0.667 Sum_probs=111.5
Q ss_pred EeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 68 VVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 68 vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
++|++|+|||||++++.+... .....+|....+.......+....+.+||++|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~------------------------- 55 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQ------------------------- 55 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCCh-------------------------
Confidence 589999999999999998876 566666663334446666667788888888887
Q ss_pred chhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCCh
Q psy9997 147 NIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~ 226 (330)
..+......+++.+|++++|+|++++
T Consensus 56 ------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~ 81 (157)
T cd00882 56 ------------------------------------------------------ERFRSLRRLYYRGADGIILVYDVTDR 81 (157)
T ss_pred ------------------------------------------------------HHHHhHHHHHhcCCCEEEEEEECcCH
Confidence 33333335567789999999999999
Q ss_pred hhHhhhhhcc--hhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHHHHhCCeeEEEEeeccCCC
Q psy9997 227 SSFENVKEKW--VPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLAKELKAVKYVECSALTQKG 303 (330)
Q Consensus 227 ~s~~~~~~~~--~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~e~Sa~~~~~ 303 (330)
.++.... .| .........+.|+++|+||+|+.... ...... ...+... ...+++++||..+.|
T Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 147 (157)
T cd00882 82 ESFENVK-EWLLLILINKEGENIPIILVGNKIDLPEER------------VVSEEELAEQLAKE-LGVPYFETSAKTGEN 147 (157)
T ss_pred HHHHHHH-HHHHHHHHhhccCCCcEEEEEecccccccc------------chHHHHHHHHHHhh-cCCcEEEEecCCCCC
Confidence 9999987 55 22223334689999999999997642 111111 2333333 347999999999999
Q ss_pred HHHHHHHHH
Q psy9997 304 LKNVFDEAI 312 (330)
Q Consensus 304 v~~~f~~l~ 312 (330)
++++++++.
T Consensus 148 i~~~~~~l~ 156 (157)
T cd00882 148 VEELFEELA 156 (157)
T ss_pred hHHHHHHHh
Confidence 999999875
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=1.8e-18 Score=143.67 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=99.4
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.|+++|++|+|||||+++|...++...+.++....+. ..+..+ +....+.+|||+|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--------------------- 60 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--------------------- 60 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCc---------------------
Confidence 4899999999999999999998876554333322221 122222 13445566666666
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..++..+|++++|+|
T Consensus 61 ----------------------------------------------------------~~~~~~~~~~~~~~d~il~v~d 82 (168)
T cd01887 61 ----------------------------------------------------------EAFTNMRARGASLTDIAILVVA 82 (168)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHhhcCEEEEEEE
Confidence 5555555566778999999999
Q ss_pred cCCh---hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH----H-hCCeeEE
Q psy9997 223 VVSP---SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK----E-LKAVKYV 294 (330)
Q Consensus 223 ~~~~---~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~-~~~~~~~ 294 (330)
+++. +++..+. .+.. .+.|+++|+||+|+...... .+ .++...+.. . ...++++
T Consensus 83 ~~~~~~~~~~~~~~-----~~~~--~~~p~ivv~NK~Dl~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01887 83 ADDGVMPQTIEAIK-----LAKA--ANVPFIVALNKIDKPNANPE----------RV-KNELSELGLQGEDEWGGDVQIV 144 (168)
T ss_pred CCCCccHHHHHHHH-----HHHH--cCCCEEEEEEceecccccHH----------HH-HHHHHHhhccccccccCcCcEE
Confidence 9874 3333332 2222 47899999999999643110 00 011111111 1 1125799
Q ss_pred EEeeccCCCHHHHHHHHHHHhc
Q psy9997 295 ECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
++||++|.|++++|+.+.+...
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 145 PTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred EeecccCCCHHHHHHHHHHhhh
Confidence 9999999999999999987653
No 154
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=2.2e-17 Score=152.19 Aligned_cols=172 Identities=23% Similarity=0.255 Sum_probs=122.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+|++++|.+|+|||||+|+++++. ..+....|.-+.....++.+++.+ .+.||+|.++-.....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e---------- 244 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITE---------- 244 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCccccccc----------
Confidence 35999999999999999999999876 355666777777788888877764 5689999855332221
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc-cccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL-SYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~-~~~~~d~~i 218 (330)
++|.|+..+.. .+..+|.++
T Consensus 245 -----------------------------------------------------------~~E~~Sv~rt~~aI~~a~vvl 265 (444)
T COG1160 245 -----------------------------------------------------------SVEKYSVARTLKAIERADVVL 265 (444)
T ss_pred -----------------------------------------------------------ceEEEeehhhHhHHhhcCEEE
Confidence 12555544333 467899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|.|.+.+-+-++.. ....+.+ ...++++|.||+|+.+..... .....++......+.+..+.+.+||
T Consensus 266 lviDa~~~~~~qD~~--ia~~i~~--~g~~~vIvvNKWDl~~~~~~~--------~~~~k~~i~~~l~~l~~a~i~~iSA 333 (444)
T COG1160 266 LVIDATEGISEQDLR--IAGLIEE--AGRGIVIVVNKWDLVEEDEAT--------MEEFKKKLRRKLPFLDFAPIVFISA 333 (444)
T ss_pred EEEECCCCchHHHHH--HHHHHHH--cCCCeEEEEEccccCCchhhH--------HHHHHHHHHHHhccccCCeEEEEEe
Confidence 999999988877775 4444444 488999999999998751111 1112223333334444567999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.++.++|+.+.....
T Consensus 334 ~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 334 LTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 999999999998776554
No 155
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=2.5e-18 Score=158.62 Aligned_cols=165 Identities=17% Similarity=0.199 Sum_probs=109.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCc-cccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~l~~~~~~~~~~ 137 (330)
.+.+||+++|++|||||||+++|.+.++.. ....|.-..+...+..++. .+.+|||||+. .+..+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~--------- 118 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLE--------- 118 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHH---------
Confidence 456899999999999999999999988642 1222222223334445443 56899999982 111110
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
..+.......+.+||++
T Consensus 119 ---------------------------------------------------------------~~~~r~~~~~l~~aDvi 135 (339)
T PRK15494 119 ---------------------------------------------------------------KAMVRCAWSSLHSADLV 135 (339)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHhhhCCEE
Confidence 11111111246789999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~ 296 (330)
++|+|.++ +|.+....|+..+... +.|.++|+||+|+... ..+++.++++..+ ...++++
T Consensus 136 l~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---------------~~~~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 136 LLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---------------YLNDIKAFLTENHPDSLLFPI 196 (339)
T ss_pred EEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---------------cHHHHHHHHHhcCCCcEEEEE
Confidence 99998654 5666653566665543 5677899999998531 1345555555443 2579999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+.+...+-+.
T Consensus 197 SAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred eccCccCHHHHHHHHHHhCCCC
Confidence 9999999999999998877543
No 156
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=2.4e-18 Score=141.31 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=104.0
Q ss_pred EeecCCCceeEEEEeeccCCCCCCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 68 VVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 68 vvG~~~~GKTsl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
++|++|+|||||++++.+..+...+.++. .......+..++ ..+.+|||||++.+.....
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~----------------- 61 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSE----------------- 61 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCCh-----------------
Confidence 58999999999999999886544333433 233344566665 4688999999854332110
Q ss_pred chhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEEEEEEEcC
Q psy9997 147 NIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVFLVCFSVV 224 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~ilv~d~~ 224 (330)
+ ..++..++ ..+|++++|+|.+
T Consensus 62 ------------------------------------------------------~--~~~~~~~~~~~~~d~vi~v~d~~ 85 (158)
T cd01879 62 ------------------------------------------------------D--EKVARDFLLGEKPDLIVNVVDAT 85 (158)
T ss_pred ------------------------------------------------------h--HHHHHHHhcCCCCcEEEEEeeCC
Confidence 0 01112223 4899999999998
Q ss_pred ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCH
Q psy9997 225 SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 304 (330)
+++... .|...+.. .++|+++|+||+|+... ..+.. +...+++.++ .+++++||.+|.|+
T Consensus 86 ~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~------------~~~~~-~~~~~~~~~~-~~~~~iSa~~~~~~ 145 (158)
T cd01879 86 NLERNL----YLTLQLLE--LGLPVVVALNMIDEAEK------------RGIKI-DLDKLSELLG-VPVVPTSARKGEGI 145 (158)
T ss_pred cchhHH----HHHHHHHH--cCCCEEEEEehhhhccc------------ccchh-hHHHHHHhhC-CCeEEEEccCCCCH
Confidence 765432 23333433 37899999999999654 22322 3456777776 68999999999999
Q ss_pred HHHHHHHHHHh
Q psy9997 305 KNVFDEAILAA 315 (330)
Q Consensus 305 ~~~f~~l~~~i 315 (330)
+++|+.+...+
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 157
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.75 E-value=3e-18 Score=153.69 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=108.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+|+++|.+|+|||||+|++++.++. .....|....+. .+...+ ...+.+|||||.......
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~--------------- 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHS--------------- 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcch---------------
Confidence 6899999999999999999998753 344445443332 233222 245788999998211000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
. .+.+......++.++|++++|+|
T Consensus 65 ---------l-----------------------------------------------~~~~~~~~~~~l~~aDvvl~VvD 88 (270)
T TIGR00436 65 ---------L-----------------------------------------------NRLMMKEARSAIGGVDLILFVVD 88 (270)
T ss_pred ---------H-----------------------------------------------HHHHHHHHHHHHhhCCEEEEEEE
Confidence 0 01111122335678999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.++..+++ . .++..+.. .+.|+++|+||+|+... ....+....++...+..+++++||++|.
T Consensus 89 ~~~~~~~~--~-~i~~~l~~--~~~p~ilV~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 89 SDQWNGDG--E-FVLTKLQN--LKRPVVLTRNKLDNKFK-------------DKLLPLIDKYAILEDFKDIVPISALTGD 150 (270)
T ss_pred CCCCCchH--H-HHHHHHHh--cCCCEEEEEECeeCCCH-------------HHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 99877664 2 34444443 37899999999999632 1122344555555443479999999999
Q ss_pred CHHHHHHHHHHHhcC
Q psy9997 303 GLKNVFDEAILAALE 317 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~ 317 (330)
|++++++.+...+-+
T Consensus 151 gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 151 NTSFLAAFIEVHLPE 165 (270)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999887744
No 158
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.74 E-value=3.1e-18 Score=146.19 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=62.2
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.+||++|++.|......+++++|++++|||+++.. +.... .++..+.. .++|+++|+||+|+....
T Consensus 68 ~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~-~~~~~~~~--~~~p~iiv~NK~Dl~~~~---------- 133 (194)
T cd01891 68 NIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTR-FVLKKALE--LGLKPIVVINKIDRPDAR---------- 133 (194)
T ss_pred EEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHH-HHHHHHHH--cCCCEEEEEECCCCCCCC----------
Confidence 34444444666666677888999999999998742 22222 33444333 478999999999996431
Q ss_pred CCCcCHHHHHHHHHHhC------CeeEEEEeeccCCCHH
Q psy9997 273 QKPISFEQGEKLAKELK------AVKYVECSALTQKGLK 305 (330)
Q Consensus 273 ~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~ 305 (330)
.....+++.++...++ .++++++||++|.|+.
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 134 -PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred -HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 1112344444443221 2689999999998763
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.74 E-value=5.2e-18 Score=161.19 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=114.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|++.. +...++.|.-+.+...+.+++.+ +.+|||+|++.+....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~i----------- 268 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFV----------- 268 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHH-----------
Confidence 35899999999999999999999875 45666666655556677777654 5799999983321100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~i 218 (330)
+.+. .....+++++|+++
T Consensus 269 -------------------------------------------------------------e~~gi~~~~~~~~~aD~il 287 (442)
T TIGR00450 269 -------------------------------------------------------------ERLGIEKSFKAIKQADLVI 287 (442)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhhCCEEE
Confidence 1111 11234678899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.++++. |+..+.. .+.|+++|+||+|+... +...+++.++ .+++++||
T Consensus 288 ~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~------------------~~~~~~~~~~-~~~~~vSa 343 (442)
T TIGR00450 288 YVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN------------------SLEFFVSSKV-LNSSNLSA 343 (442)
T ss_pred EEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc------------------chhhhhhhcC-CceEEEEE
Confidence 99999999887764 5555543 47899999999999531 1123455555 57899999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++ .|++++|+.+...+.+.
T Consensus 344 k~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 344 KQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred ec-CCHHHHHHHHHHHHHHH
Confidence 98 69999999988877653
No 160
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=5.1e-18 Score=139.03 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=100.9
Q ss_pred EEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEecc
Q psy9997 67 VVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGN 144 (330)
Q Consensus 67 ~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~ 144 (330)
+++|++|+|||||++++.+.. +.+.+.++..+........++ ..+.+|||||.+.+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~----------------- 61 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEG----------------- 61 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhH-----------------
Confidence 479999999999999999875 344444444333344444443 56789999998332210
Q ss_pred ccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcC
Q psy9997 145 MMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV 224 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~ 224 (330)
.. ..+.......++.+|++++|+|.+
T Consensus 62 -------~~-----------------------------------------------~~~~~~~~~~~~~~d~ii~v~d~~ 87 (157)
T cd01894 62 -------IS-----------------------------------------------KEIREQAELAIEEADVILFVVDGR 87 (157)
T ss_pred -------HH-----------------------------------------------HHHHHHHHHHHHhCCEEEEEEecc
Confidence 00 111122233567899999999998
Q ss_pred ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCH
Q psy9997 225 SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGL 304 (330)
Q Consensus 225 ~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 304 (330)
++.+..... +...+.. .+.|+++|+||+|+.... .. .......+...++++||++|.|+
T Consensus 88 ~~~~~~~~~--~~~~~~~--~~~piiiv~nK~D~~~~~------------~~-----~~~~~~~~~~~~~~~Sa~~~~gv 146 (157)
T cd01894 88 EGLTPADEE--IAKYLRK--SKKPVILVVNKVDNIKEE------------DE-----AAEFYSLGFGEPIPISAEHGRGI 146 (157)
T ss_pred ccCCccHHH--HHHHHHh--cCCCEEEEEECcccCChH------------HH-----HHHHHhcCCCCeEEEecccCCCH
Confidence 765554432 2333333 269999999999997541 11 12223344337899999999999
Q ss_pred HHHHHHHHHHh
Q psy9997 305 KNVFDEAILAA 315 (330)
Q Consensus 305 ~~~f~~l~~~i 315 (330)
+++|+++++.+
T Consensus 147 ~~l~~~l~~~~ 157 (157)
T cd01894 147 GDLLDAILELL 157 (157)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 161
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.74 E-value=5.6e-18 Score=155.29 Aligned_cols=161 Identities=20% Similarity=0.170 Sum_probs=110.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
..|+++|.+|+|||||++++...+. ...|+-|.-....-.+.+++ ...+.+||+||.....
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a----------------- 219 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGA----------------- 219 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCC-----------------
Confidence 4699999999999999999998652 23333232111112233332 3567889999972100
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc---cccCCCEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL---SYPQTDVFLV 219 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~---~~~~~d~~il 219 (330)
.....+... .++.++++++
T Consensus 220 ----------------------------------------------------------~~~~gLg~~flrhierad~ll~ 241 (329)
T TIGR02729 220 ----------------------------------------------------------SEGAGLGHRFLKHIERTRVLLH 241 (329)
T ss_pred ----------------------------------------------------------cccccHHHHHHHHHHhhCEEEE
Confidence 000011111 2457999999
Q ss_pred EEEcCCh---hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 220 CFSVVSP---SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 220 v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
|+|+++. ++++++. .|..++..+. .+.|+++|+||+|+..+ . ...+..+.+++.++ .++
T Consensus 242 VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~------------~-~~~~~~~~l~~~~~-~~v 306 (329)
T TIGR02729 242 LIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKIDLLDE------------E-ELAELLKELKKALG-KPV 306 (329)
T ss_pred EEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCccCCCh------------H-HHHHHHHHHHHHcC-CcE
Confidence 9999987 6888887 7888877654 47899999999999653 1 12344556666665 689
Q ss_pred EEEeeccCCCHHHHHHHHHHHh
Q psy9997 294 VECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+++||+++.|++++++.+.+.+
T Consensus 307 i~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 307 FPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEccCCcCHHHHHHHHHHHh
Confidence 9999999999999999988754
No 162
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=4.6e-18 Score=140.26 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=67.4
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
++++|++++|+|+++.+++.. .|+..+ ..+.|+++++||+|+... ..+.+.+++++.+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~---------------~~~~~~~~~~~~~~ 120 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA---------------DVAATRKLLLETGF 120 (158)
T ss_pred HhcCCEEEEEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc---------------cHHHHHHHHHHcCC
Confidence 678999999999999887633 344333 246799999999998532 34567777777763
Q ss_pred -eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 291 -VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 -~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+++++||++|.|++++|+.+.+.+-+.
T Consensus 121 ~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 121 EEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred CCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 4899999999999999999987776443
No 163
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.74 E-value=3.7e-18 Score=142.73 Aligned_cols=91 Identities=21% Similarity=0.220 Sum_probs=66.6
Q ss_pred cccCCCEEEEEEEcCCh------hhHhhhhhcchhhhhhcC--------CCCcEEEEEeccCCCCCchhhHHhhhCCCCC
Q psy9997 210 SYPQTDVFLVCFSVVSP------SSFENVKEKWVPEITHHC--------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKP 275 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~ 275 (330)
.++.+|++++|+|.+++ .++++.. .|..++.... .+.|+++|+||+|+... +.
T Consensus 71 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~ 137 (176)
T cd01881 71 HIRRADAILHVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA------------EE 137 (176)
T ss_pred HHhccCEEEEEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch------------hH
Confidence 35679999999999988 5777776 6766665443 37899999999999754 22
Q ss_pred cCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 276 ISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 276 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.............+ ..++++||+++.|++++++.++..
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 138 LEEELVRELALEEG-AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHHHHHHHHhcCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence 22221223333333 679999999999999999998764
No 164
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.74 E-value=3.8e-18 Score=144.24 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+||++|+..+...+..+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+..+..
T Consensus 63 ~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~i~iv~nK~D~~~~~~------- 131 (189)
T cd00881 63 RVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTRE--HLRIARE--GGLPIIVAINKIDRVGEED------- 131 (189)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHH--HHHHHHH--CCCCeEEEEECCCCcchhc-------
Confidence 4566777777777777777788999999999998776554433 4444443 5899999999999975311
Q ss_pred CCCCCcCHHHHHHHHHHh-------------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKEL-------------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~-------------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.....+++++..+.. ...+++++||++|.|++++|+.+...+
T Consensus 132 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 132 ---LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ---HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 111223333333332 236899999999999999999999886
No 165
>KOG1707|consensus
Probab=99.73 E-value=1.1e-18 Score=163.50 Aligned_cols=172 Identities=24% Similarity=0.397 Sum_probs=124.9
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+..+||+++|+.|||||||+-.+..+.|.+.-++.. +.+...-++....+...|.|++..
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~---------------- 66 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSD---------------- 66 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccc----------------
Confidence 345678999999999999999999999999877643332 222222223333344666676432
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.-+.....-+++||++
T Consensus 67 ---------------------------------------------------------------~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 67 ---------------------------------------------------------------SDDRLCLRKEIRKADVI 83 (625)
T ss_pred ---------------------------------------------------------------cchhHHHHHHHhhcCEE
Confidence 11111112346789999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH-HHHHHHHhCCe-e
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ-GEKLAKELKAV-K 292 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~-~ 292 (330)
+++|+++++++.+.+...|+..+++.. .++|+||||||+|.....+ .+.+. ...+-+++.++ .
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~------------~s~e~~~~pim~~f~EiEt 151 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN------------NSDEVNTLPIMIAFAEIET 151 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc------------cchhHHHHHHHHHhHHHHH
Confidence 999999999999999999999999988 7999999999999987632 12222 33333333322 4
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.+|+||++-.++.++|....++++++-++
T Consensus 152 ciecSA~~~~n~~e~fYyaqKaVihPt~P 180 (625)
T KOG1707|consen 152 CIECSALTLANVSELFYYAQKAVIHPTSP 180 (625)
T ss_pred HHhhhhhhhhhhHhhhhhhhheeeccCcc
Confidence 79999999999999999999999988665
No 166
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=6.1e-18 Score=142.31 Aligned_cols=117 Identities=34% Similarity=0.554 Sum_probs=94.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++||+|||||||+.||..+.|+.+|.||+++.+.+.+.+++..+.+++||+++.+.+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~------------------ 62 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY------------------ 62 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhh------------------
Confidence 47999999999999999999999999999999999889888999999999999999872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccc-cCCc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK-LGGW 161 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~-~~~~ 161 (330)
..+++.||++++++++|||.+. ..++ .. ...|
T Consensus 63 ------------------------------------------~~~~~~~~~~a~~~ilvfdit~--~~Sf---~~~~~~w 95 (178)
T cd04131 63 ------------------------------------------DNVRPLCYPDSDAVLICFDISR--PETL---DSVLKKW 95 (178)
T ss_pred ------------------------------------------hhcchhhcCCCCEEEEEEECCC--hhhH---HHHHHHH
Confidence 3456779999999999998432 2222 23 3567
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
...+... .+..++.++|+|.|+.
T Consensus 96 ~~~i~~~-~~~~~iilVgnK~DL~ 118 (178)
T cd04131 96 RGEIQEF-CPNTKVLLVGCKTDLR 118 (178)
T ss_pred HHHHHHH-CCCCCEEEEEEChhhh
Confidence 6665543 4678899999999984
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=7.9e-18 Score=162.28 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=108.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC-CCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|+++|.+|||||||+++|++.++. ....|.+ -+.....+..++. .+.+|||+|++.....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~------------- 102 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKG------------- 102 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchh-------------
Confidence 368999999999999999999987752 2222222 2222334445544 4678999997310000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
. .+.+......+++.||++++|
T Consensus 103 -----------~-----------------------------------------------~~~~~~~~~~~~~~aD~il~V 124 (472)
T PRK03003 103 -----------L-----------------------------------------------QASVAEQAEVAMRTADAVLFV 124 (472)
T ss_pred -----------H-----------------------------------------------HHHHHHHHHHHHHhCCEEEEE
Confidence 0 023444455678899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||+++..++... .|...+.. .+.|+++|+||+|+... ..+..+.+...++ ..+++||++
T Consensus 125 vD~~~~~s~~~~--~i~~~l~~--~~~piilV~NK~Dl~~~---------------~~~~~~~~~~g~~--~~~~iSA~~ 183 (472)
T PRK03003 125 VDATVGATATDE--AVARVLRR--SGKPVILAANKVDDERG---------------EADAAALWSLGLG--EPHPVSALH 183 (472)
T ss_pred EECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCcc---------------chhhHHHHhcCCC--CeEEEEcCC
Confidence 999988776543 35555543 47999999999998542 1122222332333 357999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.++..+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999998865
No 168
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=6.5e-18 Score=139.29 Aligned_cols=167 Identities=20% Similarity=0.170 Sum_probs=103.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+...+|+++|.+|+|||||++++.+.++........................+.+|||+|.........
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----------- 69 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG----------- 69 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH-----------
Confidence 356899999999999999999998876432211111111111112233346678899988732111000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+.......+..+|++++|
T Consensus 70 ------------------------------------------------------------~~~~~~~~~~~~~~d~i~~v 89 (168)
T cd04163 70 ------------------------------------------------------------ERMVKAAWSALKDVDLVLFV 89 (168)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHhCCEEEEE
Confidence 11111223346788999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+|.+++.+. ....+...+... +.|+++|+||+|+... .....+....+....+..+++++||++
T Consensus 90 ~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 90 VDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKD------------KEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred EECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhcccc------------HHHHHHHHHHHHhccCCCceEEEEecc
Confidence 999987222 221233334332 6899999999999743 222233444555555446899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
+.|++++|+.+.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999998765
No 169
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.72 E-value=1.2e-17 Score=154.42 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=107.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.++|+++|.+|+|||||+|+|++..+. ..+..+.-+.....+.+.+ ...+.+|||+|..+ .+...
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~--~l~~~----------- 254 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIR--DLPHE----------- 254 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccc--cCCHH-----------
Confidence 389999999999999999999997643 2333233333344555533 23678899999711 00000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+ .+.|.... ..+.+||++++|+
T Consensus 255 ----------------------------------------------------l-----ie~f~~tl-e~~~~ADlil~Vv 276 (351)
T TIGR03156 255 ----------------------------------------------------L-----VAAFRATL-EEVREADLLLHVV 276 (351)
T ss_pred ----------------------------------------------------H-----HHHHHHHH-HHHHhCCEEEEEE
Confidence 0 02333322 2477899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|++++.+++++. .|...+.... .+.|+++|+||+|+... ..+ ..+.. +..+++++||++
T Consensus 277 D~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~------------~~v-----~~~~~--~~~~~i~iSAkt 336 (351)
T TIGR03156 277 DASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDE------------PRI-----ERLEE--GYPEAVFVSAKT 336 (351)
T ss_pred ECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCCh------------HhH-----HHHHh--CCCCEEEEEccC
Confidence 999999888876 5666555543 47899999999999642 111 11111 124689999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
|.|++++++.+...
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988764
No 170
>KOG0075|consensus
Probab=99.72 E-value=1.9e-17 Score=128.90 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=117.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++.+.++|-.++|||||++....+.|.+.-.||.|.+..+ +....+.+.+||.+||
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq------------------- 75 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ------------------- 75 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCC-------------------
Confidence 357899999999999999999999999988888888766543 4555667777887777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
.+|++.+..|++.+++++.|
T Consensus 76 ------------------------------------------------------------~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 76 ------------------------------------------------------------PRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred ------------------------------------------------------------ccHHHHHHHHhhcCcEEEEE
Confidence 55666667777888888888
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-------Cee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-------AVK 292 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~ 292 (330)
.|..+++...-..+.+++.+.+.. ...|+++.|||.|+..+ .+.+ ++....| .+.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--------------L~~~---~li~rmgL~sitdREvc 158 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--------------LSKI---ALIERMGLSSITDREVC 158 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--------------ccHH---HHHHHhCccccccceEE
Confidence 888888877776644444444433 58999999999999765 1111 2333333 256
Q ss_pred EEEEeeccCCCHHHHHHHHHHHh
Q psy9997 293 YVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+.+||+...|++.+.+++++.-
T Consensus 159 C~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 159 CFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEcCCccHHHHHHHHHHHh
Confidence 89999999999999999987653
No 171
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.72 E-value=1.1e-17 Score=159.73 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=110.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+... ...+..|..+.+...+.+++. .+.+|||+|.+.+....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~i----------- 280 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEV----------- 280 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHH-----------
Confidence 348999999999999999999998763 455555555555556666654 56889999983211100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccc-ccccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDY-DRLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~-~~~~~~~~~~~d~~i 218 (330)
+.. -......++++|+++
T Consensus 281 -------------------------------------------------------------e~~gi~~~~~~~~~aD~il 299 (449)
T PRK05291 281 -------------------------------------------------------------EKIGIERSREAIEEADLVL 299 (449)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhCCEEE
Confidence 110 001123578899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.++++.. .|.. ..+.|+++|+||+|+... .... ...+ .+++++||
T Consensus 300 ~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~------------~~~~--------~~~~-~~~i~iSA 352 (449)
T PRK05291 300 LVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGE------------IDLE--------EENG-KPVIRISA 352 (449)
T ss_pred EEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhcccc------------chhh--------hccC-CceEEEEe
Confidence 999999998888665 4433 457899999999999653 1111 2223 57999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++++.+...+..
T Consensus 353 ktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 353 KTGEGIDELREAIKELAFG 371 (449)
T ss_pred eCCCCHHHHHHHHHHHHhh
Confidence 9999999999999888754
No 172
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.72 E-value=6.1e-17 Score=159.16 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=73.5
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|......+++.+|++++|+|+++..+++... .|...+. .++|+++|+||+|+.... ..+.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~-~~~~~~~---~~ipiIiViNKiDl~~~~--------------~~~~ 142 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLA-NVYLALE---NDLEIIPVINKIDLPSAD--------------PERV 142 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHH-HHHHHHH---cCCCEEEEEECcCCCccC--------------HHHH
Confidence 445455556788899999999999877777765 5544332 378999999999996431 1222
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
..++++.++. ..++++||++|.|++++|+.++..+-.+..
T Consensus 143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~ 184 (595)
T TIGR01393 143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPKG 184 (595)
T ss_pred HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCCC
Confidence 3445555552 248999999999999999999988765543
No 173
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=4.7e-17 Score=135.27 Aligned_cols=165 Identities=23% Similarity=0.312 Sum_probs=103.6
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|+|||||++++.+..+. .....+........+..++. .+.+|||+|.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~----------- 68 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEE----------- 68 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhc-----------
Confidence 578999999999999999999987632 22222222222334444444 367899999732110000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccc-cCccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRL-RPLSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~-~~~~~~~~d~~il 219 (330)
..+.+... ....+..+|++++
T Consensus 69 ----------------------------------------------------------~~e~~~~~~~~~~~~~~d~vi~ 90 (174)
T cd01895 69 ----------------------------------------------------------GIEKYSVLRTLKAIERADVVLL 90 (174)
T ss_pred ----------------------------------------------------------cHHHHHHHHHHHHHhhcCeEEE
Confidence 00111111 1123568999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-HHHHh---CCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-LAKEL---KAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~~~~e 295 (330)
|+|++++.+..... ++..+.. .+.|+++|+||+|+... +....++..+ +.+.. +..++++
T Consensus 91 v~d~~~~~~~~~~~--~~~~~~~--~~~~~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 91 VIDATEGITEQDLR--IAGLILE--EGKALVIVVNKWDLVEK------------DSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred EEeCCCCcchhHHH--HHHHHHh--cCCCEEEEEeccccCCc------------cHHHHHHHHHHHHhhcccccCCceEE
Confidence 99999988876653 3333332 36899999999999764 1112222222 22222 2357999
Q ss_pred EeeccCCCHHHHHHHHHHH
Q psy9997 296 CSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~ 314 (330)
+||+++.|++++++.+.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999988764
No 174
>KOG0093|consensus
Probab=99.70 E-value=9.3e-18 Score=130.59 Aligned_cols=135 Identities=20% Similarity=0.275 Sum_probs=109.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+|++++|++.|||||++.||+.+.|.+.+.+|++-.| .+++--+.+.+++++||+++++++
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEry------------------ 83 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERY------------------ 83 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhh------------------
Confidence 5999999999999999999999999999999999777 667777889999999999995543
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..|||+|.++|++||.+. .++...++.|.
T Consensus 84 ------------------------------------------rtiTTayyRgamgfiLmyDitN-----eeSf~svqdw~ 116 (193)
T KOG0093|consen 84 ------------------------------------------RTITTAYYRGAMGFILMYDITN-----EESFNSVQDWI 116 (193)
T ss_pred ------------------------------------------hHHHHHHhhccceEEEEEecCC-----HHHHHHHHHHH
Confidence 5567789999999999998443 33455677888
Q ss_pred eeeeccCCCcccccccceeeccCCCccccc----ccccccccccc
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINPGWVRDR----SLFDTAGQEDY 203 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~D~~g~e~~ 203 (330)
.++.+..-.+.++.++|+|+|+...+.++. .+.|-.|-|-|
T Consensus 117 tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefF 161 (193)
T KOG0093|consen 117 TQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFF 161 (193)
T ss_pred HHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHh
Confidence 888887778899999999999987776653 34444444333
No 175
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.70 E-value=4.6e-17 Score=133.25 Aligned_cols=153 Identities=23% Similarity=0.237 Sum_probs=102.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+||+++|++|+|||||++++.+..+ ...+.++....+...+..+ ...+.+|||+|...+....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~------------- 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEI------------- 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchH-------------
Confidence 5899999999999999999998764 2223333222222334443 3567889999973211000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
..+.. ......+..+|++++|+
T Consensus 67 ---------------------------------------------------------~~~~~-~~~~~~~~~~~~~v~v~ 88 (157)
T cd04164 67 ---------------------------------------------------------EKIGI-ERAREAIEEADLVLFVI 88 (157)
T ss_pred ---------------------------------------------------------HHHHH-HHHHHHHhhCCEEEEEE
Confidence 00111 11223456899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++++.+..+.. .+.. ....|+++|+||+|+... ... ..... ..+++++||+++
T Consensus 89 d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~------------~~~-------~~~~~-~~~~~~~Sa~~~ 142 (157)
T cd04164 89 DASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPD------------SEL-------LSLLA-GKPIIAISAKTG 142 (157)
T ss_pred ECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCc------------ccc-------ccccC-CCceEEEECCCC
Confidence 999988887765 3322 457999999999999764 111 22233 368999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++++++...+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999987643
No 176
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.70 E-value=1.9e-17 Score=141.12 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=67.7
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.+||++|+..+..........+|++++|+|+++........ .+. +... .+.|+++|+||+|+.....
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-~~~--~~~~-~~~~~iiv~NK~Dl~~~~~--------- 137 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAE-CLV--IGEI-LCKKLIVVLNKIDLIPEEE--------- 137 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHH-HHH--HHHH-cCCCEEEEEECcccCCHHH---------
Confidence 34444444443222222345689999999998754443332 221 1111 2679999999999974311
Q ss_pred CCCcCHHHHHHHHH-H-----hCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 273 QKPISFEQGEKLAK-E-----LKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 273 ~~~v~~~~~~~~~~-~-----~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.....++..+... . ....+++++||++|.|++++++.+...+.-+
T Consensus 138 -~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 138 -RERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred -HHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1112223322211 1 1236899999999999999999999887654
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=3.7e-17 Score=139.45 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=107.1
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
....++|+++|++|+|||||++++.+.++...+.++.+......... ....+.+|||+|.....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~-------------- 84 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAK-------------- 84 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcC--------------
Confidence 34568999999999999999999999877666666665433222211 13678899999962100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC---CCE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---TDV 216 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---~d~ 216 (330)
++...++.+......+++. .++
T Consensus 85 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (196)
T PRK00454 85 -------------------------------------------------------VSKEEKEKWQKLIEEYLRTRENLKG 109 (196)
T ss_pred -------------------------------------------------------CCchHHHHHHHHHHHHHHhCccceE
Confidence 0000012222222333333 467
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+++++|.+++.+..... +...+.. .+.|+++++||+|+..... .+...+++..+..... .+++++
T Consensus 110 ~~~v~d~~~~~~~~~~~--i~~~l~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~i~~~l~~~~-~~~~~~ 174 (196)
T PRK00454 110 VVLLIDSRHPLKELDLQ--MIEWLKE--YGIPVLIVLTKADKLKKGE----------RKKQLKKVRKALKFGD-DEVILF 174 (196)
T ss_pred EEEEEecCCCCCHHHHH--HHHHHHH--cCCcEEEEEECcccCCHHH----------HHHHHHHHHHHHHhcC-CceEEE
Confidence 88888988765544321 2222222 3789999999999975311 1222233444444433 689999
Q ss_pred eeccCCCHHHHHHHHHHHhc
Q psy9997 297 SALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~ 316 (330)
||+++.|++++|+.+...+-
T Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EcCCCCCHHHHHHHHHHHhc
Confidence 99999999999998876654
No 178
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.69 E-value=1.1e-16 Score=156.69 Aligned_cols=151 Identities=20% Similarity=0.294 Sum_probs=101.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+|+++|+.++|||||+++|.+.++...+.+.+...+. ..+..++. ..+.+|||||+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGh------------------- 145 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGH------------------- 145 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCC-------------------
Confidence 5579999999999999999999998876655444322222 23333221 14556666666
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.|..++...+..+|++++|
T Consensus 146 ------------------------------------------------------------e~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 146 ------------------------------------------------------------EAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred ------------------------------------------------------------cchhhHHHhhhccCCEEEEE
Confidence 66666666677889999999
Q ss_pred EEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-------HhC-
Q psy9997 221 FSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-------ELK- 289 (330)
Q Consensus 221 ~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~- 289 (330)
+|+++ +++.+.+. ... ..++|+++++||+|+.... .+++.+... .++
T Consensus 166 Vda~dgv~~qT~e~i~-----~~~--~~~vPiIVviNKiDl~~~~---------------~e~v~~~L~~~g~~~~~~~~ 223 (587)
T TIGR00487 166 VAADDGVMPQTIEAIS-----HAK--AANVPIIVAINKIDKPEAN---------------PDRVKQELSEYGLVPEDWGG 223 (587)
T ss_pred EECCCCCCHhHHHHHH-----HHH--HcCCCEEEEEECcccccCC---------------HHHHHHHHHHhhhhHHhcCC
Confidence 99886 44444332 111 2478999999999996431 122222222 222
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..+++++||++|.|++++|+.+...
T Consensus 224 ~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 224 DTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred CceEEEEECCCCCChHHHHHhhhhh
Confidence 2579999999999999999998653
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=2.5e-17 Score=138.71 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=101.2
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
......+|+++|++|+|||||++++.+..+...+.++.+..... ....++ .+.+|||+|...-....
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~--------- 81 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSK--------- 81 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCCh---------
Confidence 34567899999999999999999999987655555555543322 222332 58899999962100000
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc---CC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP---QT 214 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~---~~ 214 (330)
...+.+......+++ .+
T Consensus 82 ------------------------------------------------------------~~~~~~~~~~~~~l~~~~~~ 101 (179)
T TIGR03598 82 ------------------------------------------------------------EEKEKWQKLIEEYLEKRENL 101 (179)
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHHHHhChhh
Confidence 000112222222333 45
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeE
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKY 293 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 293 (330)
+++++|+|.+++-+..+.. ++..+.. .+.|+++|+||+|+..+.. .....+++++.....+ ...+
T Consensus 102 ~~ii~vvd~~~~~~~~~~~--~~~~~~~--~~~pviiv~nK~D~~~~~~----------~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 102 KGVVLLMDIRHPLKELDLE--MLEWLRE--RGIPVLIVLTKADKLKKSE----------LNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred cEEEEEecCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCCHHH----------HHHHHHHHHHHHhhccCCCce
Confidence 7999999998876655553 3344433 3789999999999975321 1223444555555543 2479
Q ss_pred EEEeeccCCCHH
Q psy9997 294 VECSALTQKGLK 305 (330)
Q Consensus 294 ~e~Sa~~~~~v~ 305 (330)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 180
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.68 E-value=1.8e-17 Score=134.84 Aligned_cols=155 Identities=22% Similarity=0.261 Sum_probs=99.3
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
++|+++|.+|||||||+|++++.+.. .+++.+.-+...-.+...+ ..+.++|+||.-...+...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~------------- 65 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSE------------- 65 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSH-------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCc-------------
Confidence 58999999999999999999998743 3343333332233555555 6778899999822111000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
++.-........+.|+++.|.|
T Consensus 66 ----------------------------------------------------------ee~v~~~~l~~~~~D~ii~VvD 87 (156)
T PF02421_consen 66 ----------------------------------------------------------EERVARDYLLSEKPDLIIVVVD 87 (156)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTSSSEEEEEEE
T ss_pred ----------------------------------------------------------HHHHHHHHHhhcCCCEEEEECC
Confidence 1100111111357899999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.++.+.-.+ +..++.+. +.|+++|.||+|.... +.+.. +...+.+.++ ++++.+||+++.
T Consensus 88 a~~l~r~l~----l~~ql~e~--g~P~vvvlN~~D~a~~------------~g~~i-d~~~Ls~~Lg-~pvi~~sa~~~~ 147 (156)
T PF02421_consen 88 ATNLERNLY----LTLQLLEL--GIPVVVVLNKMDEAER------------KGIEI-DAEKLSERLG-VPVIPVSARTGE 147 (156)
T ss_dssp GGGHHHHHH----HHHHHHHT--TSSEEEEEETHHHHHH------------TTEEE--HHHHHHHHT-S-EEEEBTTTTB
T ss_pred CCCHHHHHH----HHHHHHHc--CCCEEEEEeCHHHHHH------------cCCEE-CHHHHHHHhC-CCEEEEEeCCCc
Confidence 998543322 33444443 7999999999999764 33332 3667888888 799999999999
Q ss_pred CHHHHHHHH
Q psy9997 303 GLKNVFDEA 311 (330)
Q Consensus 303 ~v~~~f~~l 311 (330)
|++++++++
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999875
No 181
>KOG0071|consensus
Probab=99.68 E-value=3.3e-16 Score=121.06 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=115.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+++|+++|-.++||||++.++..+. +....||+|.+... +.-+++.+++||.+|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvet---VtykN~kfNvwdvGGq------------------- 71 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVET---VTYKNVKFNVWDVGGQ------------------- 71 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEE---EEeeeeEEeeeeccCc-------------------
Confidence 457999999999999999999998876 44456676655432 1223556667777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++.+.+|+.||....++|+|
T Consensus 72 ------------------------------------------------------------d~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 72 ------------------------------------------------------------DKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ------------------------------------------------------------hhhhHHHHhhccCCceEEEE
Confidence 55566666777777888888
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYVE 295 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e 295 (330)
.|..++...+..++.+++.+.... .+.|+++.+||.|+..+ .+.+|+..+.+-- ..+-+..
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--------------~~pqei~d~leLe~~r~~~W~vqp 157 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--------------MKPQEIQDKLELERIRDRNWYVQP 157 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--------------cCHHHHHHHhccccccCCccEeec
Confidence 888888888887766666665443 58999999999999865 4455555444321 1245788
Q ss_pred EeeccCCCHHHHHHHHHHHhc
Q psy9997 296 CSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+||.+|.|+.+-|.++...+-
T Consensus 158 ~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 158 SCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred cccccchhHHHHHHHHHhhcc
Confidence 999999999999999887653
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=2.3e-16 Score=148.46 Aligned_cols=91 Identities=24% Similarity=0.290 Sum_probs=71.8
Q ss_pred ccCCCEEEEEEEcCCh---hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSP---SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.++++++|+|+++. +++++.. .|..++..+. .+.|+++|+||+|+... .+.+..+
T Consensus 234 ier~~llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----------------~e~l~~l 296 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKMDLPEA----------------EENLEEF 296 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCCCCcCC----------------HHHHHHH
Confidence 4568999999999865 6777776 7888887754 37899999999998421 2345567
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++.++ .+++++||+++.|++++++.+...+.+.+
T Consensus 297 ~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 297 KEKLG-PKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred HHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 77766 68999999999999999999988775543
No 183
>PRK11058 GTPase HflX; Provisional
Probab=99.67 E-value=1.8e-16 Score=149.94 Aligned_cols=164 Identities=19% Similarity=0.133 Sum_probs=105.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC-CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+|+++|.+|+|||||+|+|++..+.. +...+.-+.....+.+.+. ..+.+|||+|..+. +.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~--lp-------------- 260 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRH--LP-------------- 260 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCccccc--CC--------------
Confidence 589999999999999999999876432 2222222223334444432 24578999997210 00
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
..+| +.|... ...++.||++++|+|
T Consensus 261 -------------------------------------------------~~lv-----e~f~~t-l~~~~~ADlIL~VvD 285 (426)
T PRK11058 261 -------------------------------------------------HDLV-----AAFKAT-LQETRQATLLLHVVD 285 (426)
T ss_pred -------------------------------------------------HHHH-----HHHHHH-HHHhhcCCEEEEEEe
Confidence 0000 223221 224678999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
++++.+++++. .|...+.... .+.|+++|+||+|+... .. .... . ...+...++++||++|
T Consensus 286 aS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~~~------------~~---~~~~-~-~~~~~~~~v~ISAktG 347 (426)
T PRK11058 286 AADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDMLDD------------FE---PRID-R-DEENKPIRVWLSAQTG 347 (426)
T ss_pred CCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCCCc------------hh---HHHH-H-HhcCCCceEEEeCCCC
Confidence 99999888875 4444444332 47999999999999642 00 0000 1 1223222588999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++++.+...+..
T Consensus 348 ~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 348 AGIPLLFQALTERLSG 363 (426)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999988753
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=1.5e-16 Score=152.42 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=104.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+|+++|.+|||||||+++|.+.+. ...+..+..+.....+..++ ..+.+|||+|.+....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~--------------- 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDD--------------- 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcch---------------
Confidence 4899999999999999999998774 34444433344444555655 6789999999832000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.. .+.+......++..+|++++|+
T Consensus 65 ---------~~-----------------------------------------------~~~~~~~~~~~~~~ad~il~vv 88 (435)
T PRK00093 65 ---------GF-----------------------------------------------EKQIREQAELAIEEADVILFVV 88 (435)
T ss_pred ---------hH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 00 0222333444677899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|.+++.+..+.. ....++. .+.|+++|+||+|+... . +....+ ..++...++++||++|
T Consensus 89 d~~~~~~~~~~~--~~~~l~~--~~~piilv~NK~D~~~~-------------~---~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 89 DGRAGLTPADEE--IAKILRK--SNKPVILVVNKVDGPDE-------------E---ADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred ECCCCCCHHHHH--HHHHHHH--cCCcEEEEEECccCccc-------------h---hhHHHH-HhcCCCCCEEEEeeCC
Confidence 998764443321 2222222 27899999999997431 1 122222 2344334899999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++|+.++...
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998743
No 185
>PRK00089 era GTPase Era; Reviewed
Probab=99.67 E-value=1.5e-16 Score=144.37 Aligned_cols=169 Identities=21% Similarity=0.203 Sum_probs=107.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
++.-.|+++|++|+|||||+|+++++++.. ....|...... .+... ....+.+|||||.......
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~~~-~~~qi~~iDTPG~~~~~~~----------- 69 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GIVTE-DDAQIIFVDTPGIHKPKRA----------- 69 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EEEEc-CCceEEEEECCCCCCchhH-----------
Confidence 345679999999999999999999887532 22223222221 11111 2367888999997211000
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
. .+.+.......+.++|+++
T Consensus 70 -------------l-----------------------------------------------~~~~~~~~~~~~~~~D~il 89 (292)
T PRK00089 70 -------------L-----------------------------------------------NRAMNKAAWSSLKDVDLVL 89 (292)
T ss_pred -------------H-----------------------------------------------HHHHHHHHHHHHhcCCEEE
Confidence 0 0111122233467899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|+|+++..+ .....++..+.. .+.|+++|+||+|+... .....+....+.+..+...++++||
T Consensus 90 ~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~~------------~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 90 FVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVKD------------KEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred EEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCCC------------HHHHHHHHHHHHhhCCCCeEEEecC
Confidence 9999988322 222123333332 36899999999999743 2223345566666555568999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++.|++++++.+...+-+.
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCC
Confidence 99999999999998887543
No 186
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.66 E-value=2.2e-16 Score=135.62 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=82.4
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+|+++|++|+|||||+++|....+...+.++. ..+.. .....+....+.+||+||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~---------------------- 58 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGH---------------------- 58 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCC----------------------
Confidence 58999999999999999999998766654442 22222 1111234455666777776
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCC-CEEEEEEE
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT-DVFLVCFS 222 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~-d~~ilv~d 222 (330)
++++.....+++.+ +++|+|+|
T Consensus 59 ---------------------------------------------------------~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 59 ---------------------------------------------------------PKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHhccCCEEEEEEE
Confidence 55555555567777 99999999
Q ss_pred cCCh-hhHhhhhhcchhhhhh----cCCCCcEEEEEeccCCCCC
Q psy9997 223 VVSP-SSFENVKEKWVPEITH----HCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 223 ~~~~-~s~~~~~~~~~~~i~~----~~~~~piilV~nK~Dl~~~ 261 (330)
.++. +++..+. .|+..+.. ....+|+++|+||+|+..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVA-EFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHH-HHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9987 7888877 55544432 2258999999999999764
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=3.2e-16 Score=149.87 Aligned_cols=160 Identities=20% Similarity=0.221 Sum_probs=107.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+|+++|++|||||||+++|.+.+. ...+..+..+.....+..++. .+.+|||+|......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~---------------- 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDD---------------- 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcch----------------
Confidence 589999999999999999998763 334433333444445555554 488999999721000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
. -++.+......+++.+|++++|+|
T Consensus 63 --------~-----------------------------------------------~~~~~~~~~~~~~~~ad~vl~vvD 87 (429)
T TIGR03594 63 --------G-----------------------------------------------LDKQIREQAEIAIEEADVILFVVD 87 (429)
T ss_pred --------h-----------------------------------------------HHHHHHHHHHHHHhhCCEEEEEEe
Confidence 0 003334445556788999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
.++..+..+.. +...+++ .+.|+++|+||+|+... .. . ...+ ..++...++++||++|.
T Consensus 88 ~~~~~~~~d~~--i~~~l~~--~~~piilVvNK~D~~~~------------~~-~---~~~~-~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 88 GREGLTPEDEE--IAKWLRK--SGKPVILVANKIDGKKE------------DA-V---AAEF-YSLGFGEPIPISAEHGR 146 (429)
T ss_pred CCCCCCHHHHH--HHHHHHH--hCCCEEEEEECccCCcc------------cc-c---HHHH-HhcCCCCeEEEeCCcCC
Confidence 98765544422 3333433 37899999999998753 11 1 1122 34454479999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q psy9997 303 GLKNVFDEAILAALEP 318 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~ 318 (330)
|++++++.+...+-+.
T Consensus 147 gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 147 GIGDLLDAILELLPEE 162 (429)
T ss_pred ChHHHHHHHHHhcCcc
Confidence 9999999999887543
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.64 E-value=3.6e-16 Score=153.57 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=106.4
Q ss_pred EeEEEeecCCCceeEEEEeecc---CCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTT---NKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~---~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+.|+++|+.++|||||+++|++ ..+.+++.+++...+. ..+..++ ..+.+||+||+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGh------------------ 60 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGH------------------ 60 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCH------------------
Confidence 3588999999999999999986 3344444444433322 1233333 55666666666
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.|.......+.++|++++
T Consensus 61 -------------------------------------------------------------e~f~~~~~~g~~~aD~aIL 79 (581)
T TIGR00475 61 -------------------------------------------------------------EKFISNAIAGGGGIDAALL 79 (581)
T ss_pred -------------------------------------------------------------HHHHHHHHhhhccCCEEEE
Confidence 6665555667788999999
Q ss_pred EEEcCC---hhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC---Cee
Q psy9997 220 CFSVVS---PSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK---AVK 292 (330)
Q Consensus 220 v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~ 292 (330)
|+|+++ +++++.+. ++ .. .++| +++|+||+|+..... .....+++.++.+..+ ..+
T Consensus 80 VVDa~~G~~~qT~ehl~--il---~~--lgi~~iIVVlNK~Dlv~~~~----------~~~~~~ei~~~l~~~~~~~~~~ 142 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLA--VL---DL--LGIPHTIVVITKADRVNEEE----------IKRTEMFMKQILNSYIFLKNAK 142 (581)
T ss_pred EEECCCCCcHHHHHHHH--HH---HH--cCCCeEEEEEECCCCCCHHH----------HHHHHHHHHHHHHHhCCCCCCc
Confidence 999987 56666554 22 21 2567 999999999975310 1122345666666543 368
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++++||++|.|+++++..+...+-.
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHh
Confidence 9999999999999999988765543
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.64 E-value=5.3e-16 Score=154.12 Aligned_cols=153 Identities=18% Similarity=0.285 Sum_probs=103.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceee---cceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD---NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
+..+|+++|+.++|||||++++....+.....+++.. .+......++....+.+|||||+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh----------------- 305 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH----------------- 305 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH-----------------
Confidence 4578999999999999999999988765543332211 11122223334455666666665
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.|..++..++..+|+++
T Consensus 306 --------------------------------------------------------------e~F~~mr~rg~~~aDiaI 323 (742)
T CHL00189 306 --------------------------------------------------------------EAFSSMRSRGANVTDIAI 323 (742)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHCCEEE
Confidence 667677777788899999
Q ss_pred EEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-------HHHHh
Q psy9997 219 VCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-------LAKEL 288 (330)
Q Consensus 219 lv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~ 288 (330)
+|+|+++ +++++.+. .+. ..++|+|+|+||+|+.... .+++.+ +...+
T Consensus 324 LVVDA~dGv~~QT~E~I~-----~~k--~~~iPiIVViNKiDl~~~~---------------~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 324 LIIAADDGVKPQTIEAIN-----YIQ--AANVPIIVAINKIDKANAN---------------TERIKQQLAKYNLIPEKW 381 (742)
T ss_pred EEEECcCCCChhhHHHHH-----HHH--hcCceEEEEEECCCccccC---------------HHHHHHHHHHhccchHhh
Confidence 9999887 45554443 121 2478999999999996531 111111 12223
Q ss_pred C-CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 K-AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 ~-~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+ .++++++||++|.|++++|+.++...
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 2 36899999999999999999987653
No 190
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.63 E-value=4.2e-16 Score=133.95 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=78.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh----hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.+.......+.++|++++|+|++++ .++..+. .+.. ....|+++|+||+|+.....
T Consensus 84 ~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-----~~~~-~~~~~iiivvNK~Dl~~~~~--- 154 (203)
T cd01888 84 HVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-----ALEI-MGLKHIIIVQNKIDLVKEEQ--- 154 (203)
T ss_pred EEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-----HHHH-cCCCcEEEEEEchhccCHHH---
Confidence 467899999998877777778889999999999873 3333332 1211 12358999999999965311
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.....++.+++...+ ...+++++||++|.|++++|+.+...+-+++
T Consensus 155 -------~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 155 -------ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred -------HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 111223444444432 1257999999999999999999998776644
No 191
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.63 E-value=1.3e-15 Score=152.59 Aligned_cols=157 Identities=18% Similarity=0.296 Sum_probs=102.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+...|+++|+.++|||||+++|...++.....+.+.... ...+..++ ..+.+|||||+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGh----------------- 347 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGH----------------- 347 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCC-----------------
Confidence 34668899999999999999999988776554433321111 11233332 34555666666
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.|..++...+..+|+++
T Consensus 348 --------------------------------------------------------------e~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 348 --------------------------------------------------------------EAFTAMRARGAQVTDIVV 365 (787)
T ss_pred --------------------------------------------------------------ccchhHHHhhhhhCCEEE
Confidence 666666666778899999
Q ss_pred EEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH--HHHHHHHHHhC-Cee
Q psy9997 219 VCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF--EQGEKLAKELK-AVK 292 (330)
Q Consensus 219 lv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~-~~~ 292 (330)
||+|+++ +++++.+. .+. ..++|+|+|+||+|+...... .+.. .+...++..++ .++
T Consensus 366 LVVdAddGv~~qT~e~i~-----~a~--~~~vPiIVviNKiDl~~a~~e----------~V~~eL~~~~~~~e~~g~~vp 428 (787)
T PRK05306 366 LVVAADDGVMPQTIEAIN-----HAK--AAGVPIIVAINKIDKPGANPD----------RVKQELSEYGLVPEEWGGDTI 428 (787)
T ss_pred EEEECCCCCCHhHHHHHH-----HHH--hcCCcEEEEEECccccccCHH----------HHHHHHHHhcccHHHhCCCce
Confidence 9999987 45554443 111 247899999999999653110 0100 00111233333 368
Q ss_pred EEEEeeccCCCHHHHHHHHHHH
Q psy9997 293 YVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
++++||++|.|++++|+.+...
T Consensus 429 ~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 429 FVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EEEEeCCCCCCchHHHHhhhhh
Confidence 9999999999999999998753
No 192
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=7.8e-16 Score=151.39 Aligned_cols=151 Identities=21% Similarity=0.203 Sum_probs=102.9
Q ss_pred ecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccch
Q psy9997 70 GDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI 148 (330)
Q Consensus 70 G~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~ 148 (330)
|++|||||||+|++.+..+...+.|...... ...+..++. .+++|||||++.+.+....
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~------------------ 60 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLE------------------ 60 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchH------------------
Confidence 8999999999999999876444444443332 335555554 4789999999543322100
Q ss_pred hhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc--ccCCCEEEEEEEcCCh
Q psy9997 149 RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS--YPQTDVFLVCFSVVSP 226 (330)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~--~~~~d~~ilv~d~~~~ 226 (330)
|. ....+ ..++|++++|+|.++.
T Consensus 61 ----------------------------------------------------e~---v~~~~l~~~~aDvvI~VvDat~l 85 (591)
T TIGR00437 61 ----------------------------------------------------EE---VARDYLLNEKPDLVVNVVDASNL 85 (591)
T ss_pred ----------------------------------------------------HH---HHHHHHhhcCCCEEEEEecCCcc
Confidence 11 01111 2468999999999875
Q ss_pred hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHH
Q psy9997 227 SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKN 306 (330)
Q Consensus 227 ~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 306 (330)
+.. + .+..++.+ .+.|+++|+||+|+.+. +.+. .+.+.+++..+ ++++++||++|.|+++
T Consensus 86 er~--l--~l~~ql~~--~~~PiIIVlNK~Dl~~~------------~~i~-~d~~~L~~~lg-~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 86 ERN--L--YLTLQLLE--LGIPMILALNLVDEAEK------------KGIR-IDEEKLEERLG-VPVVPTSATEGRGIER 145 (591)
T ss_pred hhh--H--HHHHHHHh--cCCCEEEEEehhHHHHh------------CCCh-hhHHHHHHHcC-CCEEEEECCCCCCHHH
Confidence 422 1 23333333 47999999999999643 3333 35678888887 7999999999999999
Q ss_pred HHHHHHHHh
Q psy9997 307 VFDEAILAA 315 (330)
Q Consensus 307 ~f~~l~~~i 315 (330)
+|+.+.+.+
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998764
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.62 E-value=1.9e-15 Score=132.39 Aligned_cols=214 Identities=19% Similarity=0.117 Sum_probs=111.5
Q ss_pred eEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccc-------cCCCCCCCCc
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR-------LRPLSYPQTD 136 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------l~~~~~~~~~ 136 (330)
+++++|++|+|||||++++.+... ...+..+.-+...-.+..++ ..+++||+||+..... ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998763 23333333222222344443 5789999999754331 1235799999
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccc--cccccccccccccccccCccccCC
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVR--DRSLFDTAGQEDYDRLRPLSYPQT 214 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~D~~g~e~~~~~~~~~~~~~ 214 (330)
++++|+|............+.+....- .....+ ..+...+... .+..+ ...+-|..-..-..-+...-+.+|
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi--~l~~~~-~~v~~~~~~~---ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~ 153 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGI--RLNKRP-PNITIKKKKK---GGINITSTVPLTKLDEKTIKAILREYKIHNA 153 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCc--eecCCC-CeEEEEEEec---CCEEEeccCCCCCCCHHHHHHHHHHhCeeeE
Confidence 999999865322211111111111100 000001 0011100000 00000 001111100011111222223333
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
++ ...+ ..+.+++. ..+......+|+++|+||+|+... +++..+++. ..++
T Consensus 154 ~v--~~~~---~~~~~~~~----~~~~~~~~y~p~iiV~NK~Dl~~~-----------------~~~~~~~~~---~~~~ 204 (233)
T cd01896 154 DV--LIRE---DITVDDLI----DVIEGNRVYIPCLYVYNKIDLISI-----------------EELDLLARQ---PNSV 204 (233)
T ss_pred EE--EEcc---CCCHHHHH----HHHhCCceEeeEEEEEECccCCCH-----------------HHHHHHhcC---CCEE
Confidence 33 3332 33444443 122222345899999999998542 444455543 3589
Q ss_pred EEeeccCCCHHHHHHHHHHHh
Q psy9997 295 ECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i 315 (330)
++||++|.|++++|+.+.+.+
T Consensus 205 ~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 205 VISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEcCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
No 194
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=1.4e-15 Score=144.97 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=104.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
..|++||.+|+|||||+++++..+. ...|+.|.-....-.+...+ ..+.+||+||.-.....
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~--------------- 222 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASE--------------- 222 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccch---------------
Confidence 5799999999999999999997653 23333332222222233333 56889999997110000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+ .......-..++.+|++++|+|
T Consensus 223 ------------------------------------g---------------------~gLg~~fLrhieradvLv~VVD 245 (500)
T PRK12296 223 ------------------------------------G---------------------KGLGLDFLRHIERCAVLVHVVD 245 (500)
T ss_pred ------------------------------------h---------------------hHHHHHHHHHHHhcCEEEEEEC
Confidence 0 0000000113567999999999
Q ss_pred cCCh----hhHhhhhhcchhhhhhcC------------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 223 VVSP----SSFENVKEKWVPEITHHC------------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 223 ~~~~----~s~~~~~~~~~~~i~~~~------------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
+++. +.++++. .|..++..+. .+.|+|+|+||+|+... +.. .+.......
T Consensus 246 ~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da------------~el-~e~l~~~l~ 311 (500)
T PRK12296 246 CATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA------------REL-AEFVRPELE 311 (500)
T ss_pred CcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh------------HHH-HHHHHHHHH
Confidence 9863 3555554 4555554432 36899999999999643 111 122222333
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
..+ ++++++||+++.|+++++.++...+-+.
T Consensus 312 ~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 312 ARG-WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred HcC-CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 444 6899999999999999999998877543
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.61 E-value=1.4e-15 Score=148.77 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=74.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|..++..+++.+|++++|||+++ +++++.+. ++ .. .++|+++|+||+|+......
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~--~l---~~--~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN--IL---RM--YKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH--HH---HH--cCCCEEEEEECCCccchhhhccCc
Confidence 5577777778888888888899999999999987 66666654 22 22 37899999999999742100
Q ss_pred --hHHhhhC-------------------CCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 265 --LEKLAKN-------------------KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 265 --~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+..... .+..+..+.........+..+++++||++|+|+++++..+...
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0000000 0001111111111112234789999999999999999987643
No 196
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.61 E-value=7.7e-15 Score=144.53 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=70.1
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|...+..+++.+|++++|+|+++....+... .|..... .+.|+++|+||+|+.... ..+.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~-~~~~~~~---~~lpiIvViNKiDl~~a~--------------~~~v 146 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NDLEIIPVLNKIDLPAAD--------------PERV 146 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEEEECCCCCccc--------------HHHH
Confidence 444444555678899999999999876665554 4443322 378999999999986431 1122
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
..++.+.++. ..++++||++|.|+++++++++..+-.+.
T Consensus 147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 2344444442 24899999999999999999998876554
No 197
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.60 E-value=1.1e-15 Score=126.87 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=93.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|.+.+.+|++..+ .+.+.+++..+.+.+||+++..++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------------- 64 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF----------------- 64 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 48999999999999999999999999999999998776 567888999999999998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+|++++++++|||.... .....+..|
T Consensus 65 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~~-----~s~~~~~~~ 96 (166)
T cd04122 65 -------------------------------------------RAVTRSYYRGAAGALMVYDITRR-----STYNHLSSW 96 (166)
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456689999999999984431 223345667
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+........+..++.++|+|.|+..
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 6655555556788999999999853
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=2.6e-15 Score=122.31 Aligned_cols=92 Identities=23% Similarity=0.231 Sum_probs=63.0
Q ss_pred ccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh
Q psy9997 209 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL 288 (330)
Q Consensus 209 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 288 (330)
.++..+|++++|+|.++..+..... |...... .+.|+++|+||+|+..+..... ..+.........
T Consensus 71 ~~~~~~d~il~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~----------~~~~~~~~~~~~ 136 (163)
T cd00880 71 RVLERADLILFVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPEEEEEE----------LLELRLLILLLL 136 (163)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCChhhHHH----------HHHHHHhhcccc
Confidence 3567899999999999887777664 3333322 4899999999999976421100 000011122233
Q ss_pred CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 289 KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 289 ~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
...+++++||+++.|++++++.+.+.
T Consensus 137 ~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 137 LGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cCCceEEEeeeccCCHHHHHHHHHhh
Confidence 34789999999999999999998765
No 199
>KOG0072|consensus
Probab=99.60 E-value=4.2e-15 Score=115.50 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=111.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+.++++++|--|.|||++..|+.-.+ .....||+|.+... +..++..+++||..|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvge-vvttkPtigfnve~---v~yKNLk~~vwdLggq-------------------- 72 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGE-VVTTKPTIGFNVET---VPYKNLKFQVWDLGGQ-------------------- 72 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCc-ccccCCCCCcCccc---cccccccceeeEccCc--------------------
Confidence 56899999999999999999997665 33445666544432 1114455555555555
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
-+.+..|+.||.+.|++|.|.
T Consensus 73 -----------------------------------------------------------tSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 73 -----------------------------------------------------------TSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred -----------------------------------------------------------ccccHHHHHHhcccceEEEEE
Confidence 666777888899999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-----HHHHHhCCeeEEE
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-----KLAKELKAVKYVE 295 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~e 295 (330)
|.+|++-..-....++..+.+.. ....+++++||.|.... .+..|+. .-.+.. .+.+|+
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~--------------~t~~E~~~~L~l~~Lk~r-~~~Iv~ 158 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA--------------LTRSEVLKMLGLQKLKDR-IWQIVK 158 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh--------------hhHHHHHHHhChHHHhhh-eeEEEe
Confidence 99987766655545666655433 46889999999998643 2222221 111122 278999
Q ss_pred EeeccCCCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+||..|+|++.+++++.+.+..
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred eccccccCCcHHHHHHHHHHhc
Confidence 9999999999999999987754
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=3.5e-15 Score=150.50 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=102.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+|+++|++|||||||++++++.++ ....+.+.-+........++ ..+.+|||+|.+....
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~--------------- 338 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVE--------------- 338 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCc---------------
Confidence 6899999999999999999998764 22222111121122233333 4577899999731000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.. ...+......+++.+|++++|+
T Consensus 339 ---------~~-----------------------------------------------~~~~~~~~~~~~~~aD~iL~Vv 362 (712)
T PRK09518 339 ---------GI-----------------------------------------------DSAIASQAQIAVSLADAVVFVV 362 (712)
T ss_pred ---------cH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 00 0223334445678999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|.++.-+ ...+.|...++. .+.|+++|+||+|+... . ......+...++ ..+++||++|
T Consensus 363 Da~~~~~--~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~------------~---~~~~~~~~lg~~--~~~~iSA~~g 421 (712)
T PRK09518 363 DGQVGLT--STDERIVRMLRR--AGKPVVLAVNKIDDQAS------------E---YDAAEFWKLGLG--EPYPISAMHG 421 (712)
T ss_pred ECCCCCC--HHHHHHHHHHHh--cCCCEEEEEECcccccc------------h---hhHHHHHHcCCC--CeEEEECCCC
Confidence 9986432 222235555544 48999999999998532 1 111222222222 4679999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+.++..+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999988855
No 201
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.59 E-value=2.4e-15 Score=124.07 Aligned_cols=118 Identities=20% Similarity=0.315 Sum_probs=92.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|++|||||||+.||..+.|...+.||+.+.+.+.+.+++..+.+++||+++..++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQF------------------ 62 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc------------------
Confidence 47999999999999999999999999999999999888888999999999999999873221
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.|+++++++++|||... ..+ ...+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~~s---~~~~~~~~ 95 (163)
T cd04136 63 ------------------------------------------TAMRDLYIKNGQGFVLVYSITS--QSS---FNDLQDLR 95 (163)
T ss_pred ------------------------------------------chHHHHHhhcCCEEEEEEECCC--HHH---HHHHHHHH
Confidence 3456678999999999998432 111 22444455
Q ss_pred eeeecc-CCCcccccccceeeccC
Q psy9997 163 WFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..+... ..+..|+.++|||.|+.
T Consensus 96 ~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 96 EQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred HHHHHhcCCCCCCEEEEEECcccc
Confidence 444332 34577889999999984
No 202
>KOG0395|consensus
Probab=99.58 E-value=1.6e-15 Score=129.01 Aligned_cols=126 Identities=24% Similarity=0.354 Sum_probs=100.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.++||+++|++|||||+|+.||+.+.|.+.|.||+++.|.+.+.+++....+.++|+++
T Consensus 1 ~~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g-------------------- 60 (196)
T KOG0395|consen 1 LREYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAG-------------------- 60 (196)
T ss_pred CCceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCC--------------------
Confidence 468999999999999999999999999999999999999999999999999999998886
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+..| ..+...|+++++++++||+ ...+.++++ +..
T Consensus 61 ----~~~~------------------------------------~~~~~~~~~~~~gF~lVys--itd~~SF~~---~~~ 95 (196)
T KOG0395|consen 61 ----QEEF------------------------------------SAMRDLYIRNGDGFLLVYS--ITDRSSFEE---AKQ 95 (196)
T ss_pred ----cccC------------------------------------hHHHHHhhccCcEEEEEEE--CCCHHHHHH---HHH
Confidence 2221 4567789999999999997 333444443 333
Q ss_pred cceee-eccCCCcccccccceeeccCCCcccc
Q psy9997 161 WFWFI-STEHSPPMKLHTLGFITNINPGWVRD 191 (330)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 191 (330)
+...+ ........|+.++|||.|+...+.+.
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~ 127 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERERQVS 127 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhccccC
Confidence 33334 33455668999999999997554443
No 203
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=4.1e-15 Score=126.35 Aligned_cols=117 Identities=38% Similarity=0.621 Sum_probs=90.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
.||+++|++|||||||+.||..+.|...+.||++..+...+.+++..+.+++||+++...+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------------------- 61 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEF------------------- 61 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhc-------------------
Confidence 3899999999999999999999999999999999888888888999999999998872221
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCcc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGWF 162 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~~ 162 (330)
..+++.||++++++++||+.... .++ ..+ ..|+
T Consensus 62 -----------------------------------------~~l~~~~~~~a~~~ilv~dv~~~--~sf---~~~~~~~~ 95 (189)
T cd04134 62 -----------------------------------------DRLRSLSYADTDVIMLCFSVDSP--DSL---ENVESKWL 95 (189)
T ss_pred -----------------------------------------cccccccccCCCEEEEEEECCCH--HHH---HHHHHHHH
Confidence 33566789999999999973322 122 112 2355
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+.. ..+..|+.++|||.|+..
T Consensus 96 ~~i~~-~~~~~piilvgNK~Dl~~ 118 (189)
T cd04134 96 GEIRE-HCPGVKLVLVALKCDLRE 118 (189)
T ss_pred HHHHH-hCCCCCEEEEEEChhhcc
Confidence 54443 235788999999999854
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.58 E-value=4.3e-15 Score=141.74 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=62.8
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|.......+..+|++++|+|+++.+++......+...+.......|+++|+||+|+...... ......++
T Consensus 96 ~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~--------~~~~~~~e 167 (426)
T TIGR00483 96 RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE--------EFEAIKKE 167 (426)
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH--------HHHHHHHH
Confidence 5444333445678999999999998865432220111122222334689999999999642110 01123456
Q ss_pred HHHHHHHhC----CeeEEEEeeccCCCHHHHH
Q psy9997 281 GEKLAKELK----AVKYVECSALTQKGLKNVF 308 (330)
Q Consensus 281 ~~~~~~~~~----~~~~~e~Sa~~~~~v~~~f 308 (330)
++.+++..+ .++++++||++|.|+++++
T Consensus 168 i~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 168 VSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 777777665 2579999999999998733
No 205
>KOG1532|consensus
Probab=99.58 E-value=2.1e-16 Score=135.71 Aligned_cols=226 Identities=19% Similarity=0.263 Sum_probs=133.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc--cceeEEEEECCEEEEEEEeecCC-ceeEeEEEeecCCCceeEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF--DNYAVTVMIGGEPYTLGLNFART-MQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~ki~vvG~~~~GKTsl 79 (330)
++=+++||++|+|||++++|+....+....+|.+. |+....+.+. ..+.|-|+-. .+.+|-.=+|++|.--|||
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~---aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYP---ANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCc---cCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 45689999999999999999876665555555542 2222222111 1112222221 2235566689999777775
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
|-|... .+++...++-........++||||| |-+|
T Consensus 96 -NLF~tk----------~dqv~~~iek~~~~~~~~liDTPGQ-----------------IE~F----------------- 130 (366)
T KOG1532|consen 96 -NLFATK----------FDQVIELIEKRAEEFDYVLIDTPGQ-----------------IEAF----------------- 130 (366)
T ss_pred -HHHHHH----------HHHHHHHHHHhhcccCEEEEcCCCc-----------------eEEE-----------------
Confidence 222221 1111111111223456778999999 2222
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
-|..+|.---.. +...--.+++|-++.+++-.... |+++
T Consensus 131 ----------------------------------tWSAsGsIIte~-----lass~ptvv~YvvDt~rs~~p~t--FMSN 169 (366)
T KOG1532|consen 131 ----------------------------------TWSASGSIITET-----LASSFPTVVVYVVDTPRSTSPTT--FMSN 169 (366)
T ss_pred ----------------------------------EecCCccchHhh-----HhhcCCeEEEEEecCCcCCCchh--HHHH
Confidence 244444322222 22233446667666666655553 7777
Q ss_pred hhhcC-----CCCcEEEEEeccCCCCCchhhH-------------HhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 240 ITHHC-----QKTPFLLVGTQIDLREDAPTLE-------------KLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 240 i~~~~-----~~~piilV~nK~Dl~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
....+ .+.|+|+|.||+|+..+....+ +..+..-..+.......+-+.+..+..+.+||.+|
T Consensus 170 MlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 170 MLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 66654 4899999999999988653322 11111222344455566777777788999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|.+++|.++-.++-+
T Consensus 250 ~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDE 265 (366)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999998777654
No 206
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.57 E-value=2.9e-15 Score=124.04 Aligned_cols=118 Identities=20% Similarity=0.319 Sum_probs=92.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.+|+.+.|.+.+.||+++.+...+.+++..+.+++||+++..++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF------------------ 62 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccc------------------
Confidence 47999999999999999999999999999999999888888999999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+|+++|+++++||.... .+ ...+..|.
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~ilv~d~~~~--~s---~~~~~~~~ 95 (164)
T cd04175 63 ------------------------------------------TAMRDLYMKNGQGFVLVYSITAQ--ST---FNDLQDLR 95 (164)
T ss_pred ------------------------------------------hhHHHHHHhhCCEEEEEEECCCH--HH---HHHHHHHH
Confidence 44567789999999999984321 11 22334455
Q ss_pred eeeec-cCCCcccccccceeeccC
Q psy9997 163 WFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ...+..|+.++|||.|+.
T Consensus 96 ~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 96 EQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECCcch
Confidence 44433 234678899999999985
No 207
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.57 E-value=2.4e-15 Score=125.54 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=90.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
||+++|++|||||||++||..+.|.++|.||++..+ .+.+.+++..+.+++||+++..++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------- 62 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF------------------- 62 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH-------------------
Confidence 899999999999999999999999999999998666 578888999999999998872211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+|+++|++++|||... ..+......|+.
T Consensus 63 -----------------------------------------~~~~~~~~~~ad~~ilv~d~~~-----~~s~~~~~~~~~ 96 (170)
T cd04108 63 -----------------------------------------KCIASTYYRGAQAIIIVFDLTD-----VASLEHTRQWLE 96 (170)
T ss_pred -----------------------------------------HhhHHHHhcCCCEEEEEEECcC-----HHHHHHHHHHHH
Confidence 3356678999999999998532 223334556776
Q ss_pred eeeccCC-CcccccccceeeccC
Q psy9997 164 FISTEHS-PPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~~~-~~~~~~~~g~~~~~~ 185 (330)
.+..... ...|+.++|||.|+.
T Consensus 97 ~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 97 DALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred HHHHhcCCCCCeEEEEEEChhcC
Confidence 6544332 345788999999984
No 208
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=6.2e-15 Score=137.97 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=71.6
Q ss_pred cccCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK 283 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 283 (330)
.++.++++++|+|++ +.+.+++.. .|+.++.... .+.|+++|+||+|+... .. ..+....
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~------------~e-l~~~l~~ 299 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKIDLLDE------------EE-AEERAKA 299 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCCccCCh------------HH-HHHHHHH
Confidence 467899999999998 566777776 7888877654 36899999999999643 11 1234445
Q ss_pred HHHHhCC-eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 284 LAKELKA-VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 284 ~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+.+..+. ..++.+||+++.|++++++.+...+-+.
T Consensus 300 l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 300 IVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 5555432 3689999999999999999999887553
No 209
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.57 E-value=3.8e-15 Score=123.15 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=92.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|..+.|.+++.||++..+ .+.+.+++..+.+++||+++..+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~------------------ 62 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERY------------------ 62 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhH------------------
Confidence 5899999999999999999999999999999998665 678889999999999988762111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..|++++|+++++||... ..++ ..+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~~sf---~~~~~~~ 95 (161)
T cd04117 63 ------------------------------------------QTITKQYYRRAQGIFLVYDISS--ERSY---QHIMKWV 95 (161)
T ss_pred ------------------------------------------HhhHHHHhcCCcEEEEEEECCC--HHHH---HHHHHHH
Confidence 3345678999999999998442 2222 3455676
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+........++.++|+|.|+..
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 655544445688999999999843
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.56 E-value=1.1e-14 Score=146.70 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=110.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|..++|+++|++|||||||+|++++.+...... .|..+. +...++.....+.+|||||...+......+
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~-------- 70 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT-------- 70 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccc--------
Confidence 456899999999999999999999876422111 222221 222334455678899999994433211100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+ |.... .......+|++++
T Consensus 71 -----------s~~-----------------------------------------------E~i~~-~~l~~~~aD~vI~ 91 (772)
T PRK09554 71 -----------SLD-----------------------------------------------EQIAC-HYILSGDADLLIN 91 (772)
T ss_pred -----------cHH-----------------------------------------------HHHHH-HHHhccCCCEEEE
Confidence 000 11110 0111347899999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|.++.+... .|..++.+. +.|+++|.||+|+.+. +.+ ..+.+++++.++ ++++++||+
T Consensus 92 VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~------------~~i-~id~~~L~~~LG-~pVvpiSA~ 151 (772)
T PRK09554 92 VVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEK------------QNI-RIDIDALSARLG-CPVIPLVST 151 (772)
T ss_pred EecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhc------------cCc-HHHHHHHHHHhC-CCEEEEEee
Confidence 99999865432 234444443 7999999999998643 333 356678888888 799999999
Q ss_pred cCCCHHHHHHHHHHHh
Q psy9997 300 TQKGLKNVFDEAILAA 315 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i 315 (330)
+|.|++++.+.+....
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999887654
No 211
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=3.1e-15 Score=127.20 Aligned_cols=117 Identities=25% Similarity=0.326 Sum_probs=90.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|..+.|...+.||+++.+.+.+.+++..+.+++||+++..++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------------- 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY-------------------- 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhh--------------------
Confidence 799999999999999999999999999999999888888889999999999998872211
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..||+++|++++|||... .. +...+..|+..
T Consensus 61 ----------------------------------------~~~~~~~~~~ad~~ilv~d~~~--~~---s~~~~~~~~~~ 95 (190)
T cd04144 61 ----------------------------------------TALRDQWIREGEGFILVYSITS--RS---TFERVERFREQ 95 (190)
T ss_pred ----------------------------------------HHHHHHHHHhCCEEEEEEECCC--HH---HHHHHHHHHHH
Confidence 3356678999999999997432 11 22234455554
Q ss_pred eecc---CCCcccccccceeeccCC
Q psy9997 165 ISTE---HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 165 ~~~~---~~~~~~~~~~g~~~~~~~ 186 (330)
+... ..+..|+.++|+|.|+..
T Consensus 96 i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 96 IQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHhcccCCCCCEEEEEEChhccc
Confidence 4332 235678899999999854
No 212
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=6e-15 Score=126.56 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=88.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|..+.|...+.||++..+ .+.+.++ +..+.+.+||+++..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~------------------- 61 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE------------------- 61 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch-------------------
Confidence 6999999999999999999999999999999998655 6678888 889999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++ ..+++.||++++++++|||... . .....+..|
T Consensus 62 -----~~------------------------------------~~~~~~~~~~a~~~ilv~D~t~--~---~s~~~~~~~ 95 (201)
T cd04107 62 -----RF------------------------------------GGMTRVYYRGAVGAIIVFDVTR--P---STFEAVLKW 95 (201)
T ss_pred -----hh------------------------------------hhhHHHHhCCCCEEEEEEECCC--H---HHHHHHHHH
Confidence 11 3456788999999999998432 1 112233344
Q ss_pred ceeeec----cCCCcccccccceeeccC
Q psy9997 162 FWFIST----EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~----~~~~~~~~~~~g~~~~~~ 185 (330)
...+.. ......|+.++|+|.|+.
T Consensus 96 ~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 96 KADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 443322 123567899999999985
No 213
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=9.2e-15 Score=120.72 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=97.8
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
.|+++|++|+|||||++++.++.+.....++.+..... ....++ .+.+|||+|......
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~----------------- 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKV----------------- 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcccccc-----------------
Confidence 47899999999999999999777666555655443322 222222 788899998621100
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc---cCCCEEEEE
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY---PQTDVFLVC 220 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~---~~~d~~ilv 220 (330)
+...++.+......++ .+.++++++
T Consensus 61 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 88 (170)
T cd01876 61 ----------------------------------------------------SKEVKEKWGKLIEEYLENRENLKGVVLL 88 (170)
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHHHHHhChhhhEEEEE
Confidence 0000012222222222 345788899
Q ss_pred EEcCChhhHhh--hhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-HhCCeeEEEEe
Q psy9997 221 FSVVSPSSFEN--VKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-ELKAVKYVECS 297 (330)
Q Consensus 221 ~d~~~~~s~~~--~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~e~S 297 (330)
+|.++..+... +. .|+.. . +.|+++|+||+|+..... ............+ .....+++++|
T Consensus 89 ~d~~~~~~~~~~~~~-~~l~~---~--~~~vi~v~nK~D~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 89 IDSRHGPTEIDLEML-DWLEE---L--GIPFLVVLTKADKLKKSE----------LAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred EEcCcCCCHhHHHHH-HHHHH---c--CCCEEEEEEchhcCChHH----------HHHHHHHHHHHHHhccCCCceEEEe
Confidence 99876532222 22 33332 2 589999999999964311 1112222333333 23446899999
Q ss_pred eccCCCHHHHHHHHHHH
Q psy9997 298 ALTQKGLKNVFDEAILA 314 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~ 314 (330)
|+++.|++++++.+.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.54 E-value=2.5e-14 Score=123.89 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=57.4
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCch---hhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAP---TLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~---~~~~~~~~~~~~v~ 277 (330)
+.|......++..+|++++|+|+++..++... .|+..+.. .+.|+++|+||+|+..... ..+... .-...
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~--~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~---~l~~~ 154 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE--RLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYF---KLRHI 154 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHH---HHHHH
Confidence 44544455567789999999999877766543 34444433 3589999999999862110 000000 00011
Q ss_pred HHHHHHHHHHhCC------ee----EEEEeeccCCCHH
Q psy9997 278 FEQGEKLAKELKA------VK----YVECSALTQKGLK 305 (330)
Q Consensus 278 ~~~~~~~~~~~~~------~~----~~e~Sa~~~~~v~ 305 (330)
.++...++...+. .| +++.||+.++++.
T Consensus 155 i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 155 IDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 2334444444432 22 7789999998765
No 215
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.54 E-value=1.6e-14 Score=115.03 Aligned_cols=82 Identities=26% Similarity=0.317 Sum_probs=64.2
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
...+||.++++.|.+++.+.-. +.+...+ +.|+|-|.||+|+.. .....+.+.++.+..|
T Consensus 60 ta~dad~V~ll~dat~~~~~~p------P~fa~~f-~~pvIGVITK~Dl~~-------------~~~~i~~a~~~L~~aG 119 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFP------PGFASMF-NKPVIGVITKIDLPS-------------DDANIERAKKWLKNAG 119 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCC------chhhccc-CCCEEEEEECccCcc-------------chhhHHHHHHHHHHcC
Confidence 3458999999999998765332 2233332 679999999999983 2246678888888888
Q ss_pred CeeEEEEeeccCCCHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEA 311 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l 311 (330)
.-..|++||.+|+|++++.+.|
T Consensus 120 ~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 120 VKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCeEEEECCCCcCHHHHHHHH
Confidence 7789999999999999999876
No 216
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.54 E-value=1.1e-14 Score=120.87 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=92.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|.++.|...+.||++..+ ...+..++..+.+++||+++..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~------------------ 63 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY------------------ 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH------------------
Confidence 8999999999999999999999999999999998555 557777888899999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..++++++++++|||... ......+..|+
T Consensus 64 ------------------------------------------~~~~~~~~~~~~~~l~v~d~~~-----~~s~~~~~~~~ 96 (165)
T cd01865 64 ------------------------------------------RTITTAYYRGAMGFILMYDITN-----EESFNAVQDWS 96 (165)
T ss_pred ------------------------------------------HHHHHHHccCCcEEEEEEECCC-----HHHHHHHHHHH
Confidence 2345678999999999998542 12344566777
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+.....+..|+.++|+|.|+..
T Consensus 97 ~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 97 TQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHhCCCCCCEEEEEECcccCc
Confidence 766555556778999999999854
No 217
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.53 E-value=4.2e-15 Score=122.65 Aligned_cols=117 Identities=28% Similarity=0.503 Sum_probs=94.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
||+++|++|||||||+.+|..+.|++++.+|++ +.+.+.+.+++.++.+++|++++.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~---------------------- 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ---------------------- 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------------------
Confidence 899999999999999999999999999999995 666889999999999999987751
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
++ + ..++..+++++|+++++|+. ........+..|+.
T Consensus 59 --~~----~--------------------------------~~~~~~~~~~~~~~ii~fd~-----~~~~S~~~~~~~~~ 95 (162)
T PF00071_consen 59 --ER----F--------------------------------DSLRDIFYRNSDAIIIVFDV-----TDEESFENLKKWLE 95 (162)
T ss_dssp --GG----G--------------------------------HHHHHHHHTTESEEEEEEET-----TBHHHHHTHHHHHH
T ss_pred --cc----c--------------------------------cccccccccccccccccccc-----cccccccccccccc
Confidence 11 1 23455679999999999972 22233445668888
Q ss_pred eeeccCCCcccccccceeeccCC
Q psy9997 164 FISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+........|+.++|+|.|+..
T Consensus 96 ~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 96 EIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccceeeeccccccc
Confidence 77776666789999999999853
No 218
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.53 E-value=1.3e-14 Score=120.66 Aligned_cols=120 Identities=16% Similarity=0.321 Sum_probs=94.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
.++||+++|++|||||||+.+|..+.|.+.+.||++..+ .+.+.+++..+.+++||+++..++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------------- 65 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF---------------- 65 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH----------------
Confidence 368999999999999999999999999999999998666 567888999999999988862211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|+++++||... . .....+..
T Consensus 66 --------------------------------------------~~~~~~~~~~ad~~i~v~d~~~--~---~s~~~~~~ 96 (167)
T cd01867 66 --------------------------------------------RTITTAYYRGAMGIILVYDITD--E---KSFENIRN 96 (167)
T ss_pred --------------------------------------------HHHHHHHhCCCCEEEEEEECcC--H---HHHHhHHH
Confidence 2234567899999999998432 2 22345667
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+........|+.++|+|.|+..
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 77776665556788999999999853
No 219
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.52 E-value=1.5e-14 Score=119.00 Aligned_cols=118 Identities=28% Similarity=0.367 Sum_probs=90.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.+|..+.|...+.||+++.+.+.+.+++..+.+++||+++..++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------ 62 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY------------------ 62 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch------------------
Confidence 47999999999999999999999999999999999888888889999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..|++++++++++|+... ..++ ..+..|.
T Consensus 63 ------------------------------------------~~l~~~~~~~~~~~i~v~~~~~--~~s~---~~~~~~~ 95 (162)
T cd04138 63 ------------------------------------------SAMRDQYMRTGEGFLCVFAINS--RKSF---EDIHTYR 95 (162)
T ss_pred ------------------------------------------HHHHHHHHhcCCEEEEEEECCC--HHHH---HHHHHHH
Confidence 4456678999999999997442 2222 2333344
Q ss_pred eeeecc-CCCcccccccceeeccC
Q psy9997 163 WFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..+... ..+..|+.++|||.|+.
T Consensus 96 ~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 96 EQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECcccc
Confidence 444332 23567889999999984
No 220
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.51 E-value=3.4e-14 Score=118.83 Aligned_cols=117 Identities=45% Similarity=0.822 Sum_probs=89.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+|++++|++|||||||+.+|..+.|..+|.||+.+.+...+.+++..+.+++||+++..++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------- 61 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF------------------- 61 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhh-------------------
Confidence 6999999999999999999999999999999998888888899999999999998873111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..+++.+++++|+++++||..... ++. .....|+.
T Consensus 62 -----------------------------------------~~~~~~~~~~a~~~i~v~d~~~~~--sf~--~~~~~~~~ 96 (173)
T cd04130 62 -----------------------------------------DKLRPLCYPDTDVFLLCFSVVNPS--SFQ--NISEKWIP 96 (173)
T ss_pred -----------------------------------------ccccccccCCCcEEEEEEECCCHH--HHH--HHHHHHHH
Confidence 334567899999999999844321 111 11123544
Q ss_pred eeeccCCCcccccccceeeccC
Q psy9997 164 FISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.+.. ..+..|+.++|||.|+.
T Consensus 97 ~~~~-~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 97 EIRK-HNPKAPIILVGTQADLR 117 (173)
T ss_pred HHHh-hCCCCCEEEEeeChhhc
Confidence 4432 23467889999999984
No 221
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.51 E-value=3.1e-14 Score=118.38 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=89.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++||+.+.|...+.||++..+ ...+..++..+.+.+||++++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF------------------ 62 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh------------------
Confidence 6999999999999999999999999999999997555 556777889999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+|+++|++++|||.+. ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~i~v~d~~~-----~~s~~~~~~~~ 95 (166)
T cd00877 63 ------------------------------------------GGLRDGYYIGGQCAIIMFDVTS-----RVTYKNVPNWH 95 (166)
T ss_pred ------------------------------------------ccccHHHhcCCCEEEEEEECCC-----HHHHHHHHHHH
Confidence 2345567899999999998442 12223455677
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+..... ..|+.++|+|.|+.
T Consensus 96 ~~i~~~~~-~~piiiv~nK~Dl~ 117 (166)
T cd00877 96 RDLVRVCG-NIPIVLCGNKVDIK 117 (166)
T ss_pred HHHHHhCC-CCcEEEEEEchhcc
Confidence 66655433 78899999999985
No 222
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.51 E-value=1.8e-14 Score=119.13 Aligned_cols=119 Identities=21% Similarity=0.311 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+++|..+.|...+.+|+.+.+.+.+.+++..+.+++||+++..++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------------------- 61 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF------------------- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccc-------------------
Confidence 5999999999999999999999999999999999888888889999999999998872221
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++++++++++|+.... .....+..|..
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~~~ 95 (164)
T smart00173 62 -----------------------------------------SAMRDQYMRTGEGFLLVYSITDR-----QSFEEIKKFRE 95 (164)
T ss_pred -----------------------------------------hHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHHHHH
Confidence 23455678999999999984421 11223344443
Q ss_pred eeec-cCCCcccccccceeeccCCC
Q psy9997 164 FIST-EHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 164 ~~~~-~~~~~~~~~~~g~~~~~~~~ 187 (330)
.+.. ......|+.++|||.|+...
T Consensus 96 ~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 96 QILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHHHhcCCCCCCEEEEEECcccccc
Confidence 3322 23346788999999998643
No 223
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.51 E-value=2.4e-14 Score=132.31 Aligned_cols=159 Identities=21% Similarity=0.185 Sum_probs=110.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..|+++|.+|||||||.||+++.+. .++++.+.-+.......+.+.. +.+.||+|.+.-..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~--------------- 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDE--------------- 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCc---------------
Confidence 5699999999999999999999874 5666666666666667776666 77889999832110
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
..+ ++.........+..||++++|.
T Consensus 67 --------~~l-----------------------------------------------~~~i~~Qa~~Ai~eADvilfvV 91 (444)
T COG1160 67 --------DEL-----------------------------------------------QELIREQALIAIEEADVILFVV 91 (444)
T ss_pred --------hHH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 000 0233344555678999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|...--+-.+. ...+.++ ..+.|++||+||+|-... .+.+.+|. .+|.-.++.+||.+|
T Consensus 92 D~~~Git~~D~--~ia~~Lr--~~~kpviLvvNK~D~~~~----------------e~~~~efy-slG~g~~~~ISA~Hg 150 (444)
T COG1160 92 DGREGITPADE--EIAKILR--RSKKPVILVVNKIDNLKA----------------EELAYEFY-SLGFGEPVPISAEHG 150 (444)
T ss_pred eCCCCCCHHHH--HHHHHHH--hcCCCEEEEEEcccCchh----------------hhhHHHHH-hcCCCCceEeehhhc
Confidence 98763333332 2333333 247999999999998532 12222232 334457899999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|+.+++++++..+
T Consensus 151 ~Gi~dLld~v~~~l 164 (444)
T COG1160 151 RGIGDLLDAVLELL 164 (444)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999999987
No 224
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=2.2e-14 Score=121.65 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|..+.|...+.+|++..+ .+.+.+++..+.+++||+++....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~------------------ 62 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF------------------ 62 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH------------------
Confidence 6999999999999999999999999988999998666 567888899999999988862111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+++++|+++++||.... .....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~iilv~d~~~~-----~s~~~i~~~~ 95 (188)
T cd04125 63 ------------------------------------------RSLNNSYYRGAHGYLLVYDVTDQ-----ESFENLKFWI 95 (188)
T ss_pred ------------------------------------------HhhHHHHccCCCEEEEEEECcCH-----HHHHHHHHHH
Confidence 23456678999999999985431 2233445576
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+........++.++|+|.|+.
T Consensus 96 ~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 96 NEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HHHHHhCCCCCeEEEEEECCCCc
Confidence 66655545557889999999985
No 225
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.51 E-value=3.1e-14 Score=139.81 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=73.6
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|..++...+..+|++++|+|+++ +++++.+. ++ .. .++|+++|+||+|+......
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~--~~---~~--~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN--IL---KR--RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH--HH---HH--cCCCEEEEEECcCCchhhhhhcCc
Confidence 4578888888888888878889999999999997 77777665 22 11 47899999999998531000
Q ss_pred --hHHhhhC-------------------CCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 265 --LEKLAKN-------------------KQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 265 --~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.+..+.. ....+..+......+..+..+++++||++|.|++++++.+..
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000000 000011111111111123467999999999999999988764
No 226
>KOG0083|consensus
Probab=99.51 E-value=7.6e-16 Score=118.02 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=91.4
Q ss_pred EEcCCCCChhHHHHHHHhCCCCC-CCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeecc
Q psy9997 8 VVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
++||+++|||||+.||-.+.|-. +.++|++-.| .+-+.++++.+++++|++++ +
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtag------------------------q 57 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG------------------------Q 57 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccc------------------------h
Confidence 78999999999999999998865 5789998777 66889999999999999998 4
Q ss_pred CCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee
Q psy9997 86 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI 165 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (330)
++| ++....|||+||+.+++||... ..+......|+.++
T Consensus 58 erf------------------------------------rsvt~ayyrda~allllydian-----kasfdn~~~wlsei 96 (192)
T KOG0083|consen 58 ERF------------------------------------RSVTHAYYRDADALLLLYDIAN-----KASFDNCQAWLSEI 96 (192)
T ss_pred HHH------------------------------------hhhhHhhhcccceeeeeeeccc-----chhHHHHHHHHHHH
Confidence 444 6667889999999999997443 12233445566666
Q ss_pred eccCCCcccccccceeeccCC
Q psy9997 166 STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 166 ~~~~~~~~~~~~~g~~~~~~~ 186 (330)
-........+.+.|+|+|+.+
T Consensus 97 ~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 97 HEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred HHHHHhhHhHhhhccccccch
Confidence 666667788899999999854
No 227
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.50 E-value=4.4e-14 Score=117.20 Aligned_cols=118 Identities=19% Similarity=0.340 Sum_probs=89.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+++|+.+.|...+.||++..+...+..+...+.+++||+++..++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------- 62 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQF------------------- 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcc-------------------
Confidence 7999999999999999999999999999999998888878888889999999998872221
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++.++++++|||.... . ....+..|+.
T Consensus 63 -----------------------------------------~~~~~~~~~~~~~~ilv~d~~~~--~---s~~~~~~~~~ 96 (165)
T cd04140 63 -----------------------------------------PAMQRLSISKGHAFILVYSVTSK--Q---SLEELKPIYE 96 (165)
T ss_pred -----------------------------------------hHHHHHHhhcCCEEEEEEECCCH--H---HHHHHHHHHH
Confidence 23445678899999999984321 1 2223444444
Q ss_pred eeec---cCCCcccccccceeeccCC
Q psy9997 164 FIST---EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~---~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.. ...+..|+.++|+|.|+..
T Consensus 97 ~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 97 LICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHhcCCCCCCCEEEEEECccccc
Confidence 3322 2236788999999999853
No 228
>COG1159 Era GTPase [General function prediction only]
Probab=99.50 E-value=7.2e-14 Score=122.59 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=112.2
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
+++.--++++|.+|||||||+|++++.+. .+....|.-....-.+..+ ...+.+.||||.-.-+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk------------ 68 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPK------------ 68 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcc------------
Confidence 45667899999999999999999999885 3333444433333222222 6677788999971100
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+..+ +.........+.++|++
T Consensus 69 ------------~~l~-----------------------------------------------~~m~~~a~~sl~dvDli 89 (298)
T COG1159 69 ------------HALG-----------------------------------------------ELMNKAARSALKDVDLI 89 (298)
T ss_pred ------------hHHH-----------------------------------------------HHHHHHHHHHhccCcEE
Confidence 0000 22334445567899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|.|.+....-.+- ..++.++. .+.|++++.||+|.... ..........+.........+++|
T Consensus 90 lfvvd~~~~~~~~d~--~il~~lk~--~~~pvil~iNKID~~~~------------~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 90 LFVVDADEGWGPGDE--FILEQLKK--TKTPVILVVNKIDKVKP------------KTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred EEEEeccccCCccHH--HHHHHHhh--cCCCeEEEEEccccCCc------------HHHHHHHHHHHHhhCCcceEEEee
Confidence 999999874433221 23444544 46899999999999875 221223333444444445689999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|+.|.|++.+.+.+...+-+.
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCC
Confidence 999999999999888777553
No 229
>PLN03110 Rab GTPase; Provisional
Probab=99.50 E-value=2.5e-14 Score=124.08 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=93.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|..++.+|++..+ .+.+.+++..+.+++||+++..++
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~----------------- 74 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY----------------- 74 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 58999999999999999999999999999999998666 678899999999999988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+...++++++++++|||... . .....+..|
T Consensus 75 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~---~s~~~~~~~ 106 (216)
T PLN03110 75 -------------------------------------------RAITSAYYRGAVGALLVYDITK--R---QTFDNVQRW 106 (216)
T ss_pred -------------------------------------------HHHHHHHhCCCCEEEEEEECCC--h---HHHHHHHHH
Confidence 3345678999999999998432 1 222345567
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++.++|+|.|+.
T Consensus 107 ~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 107 LRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred HHHHHHhCCCCCeEEEEEEChhcc
Confidence 666555555678999999999984
No 230
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.50 E-value=2.2e-14 Score=118.71 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=89.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+|+.+.|.+.+.||++..+ .+.+.+++..+.+++||+++....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY------------------ 62 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH------------------
Confidence 6999999999999999999999999999999998666 668888999999999998872111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.+++++++++++||.... . ....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~ilv~D~~~~--~---s~~~~~~~~ 95 (168)
T cd04119 63 ------------------------------------------LEVRNEFYKDTQGVLLVYDVTDR--Q---SFEALDSWL 95 (168)
T ss_pred ------------------------------------------HHHHHHHhccCCEEEEEEECCCH--H---HHHhHHHHH
Confidence 23456688999999999984432 1 123344565
Q ss_pred eeeeccC-----CCcccccccceeeccC
Q psy9997 163 WFISTEH-----SPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~-----~~~~~~~~~g~~~~~~ 185 (330)
..+.... ....|+.++|+|.|+.
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhcc
Confidence 5444332 2467889999999984
No 231
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.50 E-value=1.6e-14 Score=123.51 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=60.5
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH---
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK--- 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 286 (330)
.+.++|.++++.+ .+|......|+..+.+. +.|+++|+||+|+............. .+....++.++.+.
T Consensus 77 ~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~-~~~~~l~~i~~~~~~~~ 149 (197)
T cd04104 77 KFSEYDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSF-NREQVLQEIRDNCLENL 149 (197)
T ss_pred CccCcCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccc-cHHHHHHHHHHHHHHHH
Confidence 4667898888732 23555544677777665 68999999999996532211100000 01111122222222
Q ss_pred -Hh--CCeeEEEEeec--cCCCHHHHHHHHHHHhcCC
Q psy9997 287 -EL--KAVKYVECSAL--TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 287 -~~--~~~~~~e~Sa~--~~~~v~~~f~~l~~~i~~~ 318 (330)
.. ...++|-+|+. .+.++.++.+.++..+-++
T Consensus 150 ~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 150 QEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 11 12468999998 5799999999998887543
No 232
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.50 E-value=3.4e-14 Score=117.85 Aligned_cols=118 Identities=17% Similarity=0.355 Sum_probs=91.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++||+++|++|||||||+.++.++.|...+.+|++..+ .+.+.+++..+.+++||+++..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~------------------- 62 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE------------------- 62 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 58999999999999999999999999999999998555 6678889999999999888611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++ ..++..++++++++++|||.+. ......+..|
T Consensus 63 -----~~------------------------------------~~~~~~~~~~~~~ii~v~d~~~-----~~s~~~l~~~ 96 (166)
T cd01869 63 -----RF------------------------------------RTITSSYYRGAHGIIIVYDVTD-----QESFNNVKQW 96 (166)
T ss_pred -----hH------------------------------------HHHHHHHhCcCCEEEEEEECcC-----HHHHHhHHHH
Confidence 11 2345567899999999998542 1233344556
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+..+|+|.|+.
T Consensus 97 ~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 97 LQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred HHHHHHhCCCCCcEEEEEEChhcc
Confidence 665554444667889999999984
No 233
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=2e-13 Score=111.16 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=80.9
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~ 273 (330)
++++|||+||.-++..+++.+.+.+++.|.+.+..|+.. ..+..+.... .+|+++.+||.|+...
T Consensus 72 LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~--~ii~f~~~~~-~ip~vVa~NK~DL~~a------------ 136 (187)
T COG2229 72 LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAE--EIIDFLTSRN-PIPVVVAINKQDLFDA------------ 136 (187)
T ss_pred EecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHH--HHHHHHhhcc-CCCEEEEeeccccCCC------------
Confidence 345555588888888999999999999999999999443 3444444432 3999999999999864
Q ss_pred CCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHH-hcC
Q psy9997 274 KPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILA-ALE 317 (330)
Q Consensus 274 ~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~-i~~ 317 (330)
.+.+..+++.+.. -..+.++++|..++++.+.++.+... .+.
T Consensus 137 --~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~~~~~ 180 (187)
T COG2229 137 --LPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLG 180 (187)
T ss_pred --CCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhhcccC
Confidence 4555555555443 23789999999999999999988776 443
No 234
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.49 E-value=2.2e-14 Score=121.74 Aligned_cols=109 Identities=24% Similarity=0.293 Sum_probs=70.5
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.++|+||+..|.......+..+|++++|.|+.+.-.-.... .+..+.. .++|+++|.||+|+.....
T Consensus 73 ~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~~--~~~p~ivvlNK~D~~~~~~--------- 139 (188)
T PF00009_consen 73 TLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILRE--LGIPIIVVLNKMDLIEKEL--------- 139 (188)
T ss_dssp EEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHHH--TT-SEEEEEETCTSSHHHH---------
T ss_pred eecccccccceeecccceecccccceeeeeccccccccccc--ccccccc--cccceEEeeeeccchhhhH---------
Confidence 34455555666555556688899999999998653333322 3333333 3789999999999973210
Q ss_pred CCCcCHHHHHHHHHHhC-----CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 273 QKPISFEQGEKLAKELK-----AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 273 ~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
..+..+....+.+..+ .++++.+||.+|.|++++++.+.+.+
T Consensus 140 -~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 140 -EEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp -HHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 1112222224544442 36899999999999999999987654
No 235
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.49 E-value=4.5e-14 Score=116.73 Aligned_cols=115 Identities=15% Similarity=0.263 Sum_probs=88.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc-ceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||..+.|.+.+.+|.+. .+.....+++..+.+++||+++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------------------- 61 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER------------------- 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-------------------
Confidence 69999999999999999999999999999888864 4466788899999999999887221
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
| ..+++.|++++|++++|||.+.. .....+..|+
T Consensus 62 -----~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~~ 95 (161)
T cd04124 62 -----F------------------------------------QTMHASYYHKAHACILVFDVTRK-----ITYKNLSKWY 95 (161)
T ss_pred -----h------------------------------------hhhhHHHhCCCCEEEEEEECCCH-----HHHHHHHHHH
Confidence 1 34567789999999999984321 1123344566
Q ss_pred eeeeccCCCcccccccceeecc
Q psy9997 163 WFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
..+.. ..+..|+.++|+|.|+
T Consensus 96 ~~i~~-~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 96 EELRE-YRPEIPCIVVANKIDL 116 (161)
T ss_pred HHHHH-hCCCCcEEEEEECccC
Confidence 55533 2356788999999997
No 236
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.49 E-value=5.6e-14 Score=134.05 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=67.1
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|++.|.......+..+|++++|+|++++.++......++..+ ......|+++|+||+|+.......
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~~~iivviNK~Dl~~~~~~~----- 158 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGINQLIVAINKMDAVNYDEKR----- 158 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCCCeEEEEEEccccccccHHH-----
Confidence 34567777767665544445678999999999987422222221122222 222235799999999997521100
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHHHHH
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLKNVF 308 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~f 308 (330)
-....+++.++.+..+. .+++++||++|.|+++.+
T Consensus 159 ---~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 159 ---YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ---HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 01233556666665552 579999999999998744
No 237
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.49 E-value=2.8e-14 Score=123.71 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=88.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECC-EEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGG-EPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+++|..+.|...|.||++ +.+.+.+.+++ ..+.+++||+++..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~------------------- 61 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS------------------- 61 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-------------------
Confidence 6999999999999999999999999999999997 55677888864 68999999888611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..+...||+++|++++|||.+. ..+ ...+..|
T Consensus 62 -----~~------------------------------------~~l~~~~~~~ad~iilV~D~t~--~~s---~~~~~~w 95 (215)
T cd04109 62 -----IG------------------------------------GKMLDKYIYGAHAVFLVYDVTN--SQS---FENLEDW 95 (215)
T ss_pred -----HH------------------------------------HHHHHHHhhcCCEEEEEEECCC--HHH---HHHHHHH
Confidence 11 3345678999999999998432 112 2344456
Q ss_pred ceeeeccC---CCcccccccceeeccC
Q psy9997 162 FWFISTEH---SPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~---~~~~~~~~~g~~~~~~ 185 (330)
...+.... ....++.++|+|.|+.
T Consensus 96 ~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 96 YSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHhccccCCCceEEEEEECcccc
Confidence 65554322 2445788999999985
No 238
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.49 E-value=3.7e-14 Score=134.26 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=76.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChh----hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS----SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~----s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|...+...+..+|++++|+|+++.. +.+.+. .+ ......|+++|+||+|+.....
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-----~l-~~~gi~~iIVvvNK~Dl~~~~~--- 151 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-----AL-EIIGIKNIVIVQNKIDLVSKEK--- 151 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-----HH-HHcCCCeEEEEEEccccCCHHH---
Confidence 4567888888988777766777899999999998643 333332 22 2222357999999999975311
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.....++...+.+.. ..++++++||++|.|++++++.+...+-.+
T Consensus 152 -------~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 152 -------ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred -------HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 111223444444432 136899999999999999999998766433
No 239
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.49 E-value=3.4e-14 Score=120.26 Aligned_cols=117 Identities=42% Similarity=0.748 Sum_probs=89.2
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+++|.++.|...+.||++..+...+... +..+.+.+||+++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~------------------- 61 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE------------------- 61 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-------------------
Confidence 59999999999999999999999999999999998887777776 8889999999887211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGW 161 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~ 161 (330)
+ ..+++.+++++|++++|||... ..++ ..+ ..|
T Consensus 62 -----~------------------------------------~~~~~~~~~~ad~ii~v~d~~~--~~s~---~~~~~~~ 95 (187)
T cd04132 62 -----Y------------------------------------DRLRPLSYPDVDVLLICYAVDN--PTSL---DNVEDKW 95 (187)
T ss_pred -----H------------------------------------HHHHHHhCCCCCEEEEEEECCC--HHHH---HHHHHHH
Confidence 1 3345668899999999998542 1222 122 235
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ..+..|+.++|+|.|+..
T Consensus 96 ~~~~~~-~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 96 FPEVNH-FCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHHH-hCCCCCEEEEEeChhhhh
Confidence 544332 346788999999999853
No 240
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.49 E-value=2.4e-14 Score=122.48 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=87.4
Q ss_pred EcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeeccCC
Q psy9997 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 9 lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
||++|||||||+.||+.+.|...|.||++..+ ...+.+++..+.+++||+++.. +
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e------------------------~ 56 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE------------------------K 56 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch------------------------h
Confidence 69999999999999999999999999998555 6678889999999999998722 2
Q ss_pred CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeec
Q psy9997 88 FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFIST 167 (330)
Q Consensus 88 ~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (330)
| +.+++.||++++++++|||.+.. .....+..|...+..
T Consensus 57 ~------------------------------------~~l~~~~~~~ad~~ilV~D~t~~-----~S~~~i~~w~~~i~~ 95 (200)
T smart00176 57 F------------------------------------GGLRDGYYIQGQCAIIMFDVTAR-----VTYKNVPNWHRDLVR 95 (200)
T ss_pred h------------------------------------hhhhHHHhcCCCEEEEEEECCCh-----HHHHHHHHHHHHHHH
Confidence 1 45677899999999999985432 122334556665544
Q ss_pred cCCCcccccccceeeccC
Q psy9997 168 EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 168 ~~~~~~~~~~~g~~~~~~ 185 (330)
. .+..|+.++|||.|+.
T Consensus 96 ~-~~~~piilvgNK~Dl~ 112 (200)
T smart00176 96 V-CENIPIVLCGNKVDVK 112 (200)
T ss_pred h-CCCCCEEEEEECcccc
Confidence 3 3578999999999984
No 241
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.49 E-value=4e-14 Score=118.05 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=92.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|+.+.|+..+.+|++..+ .+.+.+++..+.+++||+++...++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 65 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR--------------- 65 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---------------
Confidence 468999999999999999999999999999999997554 6688899999999999888622110
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+...|++++|++++|||... ......+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~-----~~s~~~~~~ 96 (170)
T cd04115 66 --------------------------------------------KSMVQHYYRNVHAVVFVYDVTN-----MASFHSLPS 96 (170)
T ss_pred --------------------------------------------HhhHHHhhcCCCEEEEEEECCC-----HHHHHhHHH
Confidence 1234567899999999998542 222334556
Q ss_pred cceeeecc-CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .....|+.++|+|.|+..
T Consensus 97 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 97 WIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchh
Confidence 76655543 346789999999999853
No 242
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.49 E-value=5e-14 Score=116.34 Aligned_cols=119 Identities=24% Similarity=0.331 Sum_probs=92.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
|.+||+++|++|||||||+.+|+.+.|...+.+|+.+.+.....+++..+.+++||++++.++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 63 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEF----------------- 63 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcch-----------------
Confidence 579999999999999999999999999999999999888878889999999999999872221
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++||+... ... ...+..|
T Consensus 64 -------------------------------------------~~~~~~~~~~~~~~ilv~d~~~--~~s---~~~~~~~ 95 (164)
T cd04145 64 -------------------------------------------SAMREQYMRTGEGFLLVFSVTD--RGS---FEEVDKF 95 (164)
T ss_pred -------------------------------------------hHHHHHHHhhCCEEEEEEECCC--HHH---HHHHHHH
Confidence 2345568899999999997443 111 2234445
Q ss_pred ceeeecc-CCCcccccccceeeccC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+..+... .....|+.+++||.|+.
T Consensus 96 ~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 96 HTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred HHHHHHHhCCCCCCEEEEeeCcccc
Confidence 5544432 34567889999999985
No 243
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.48 E-value=6.2e-14 Score=117.12 Aligned_cols=116 Identities=48% Similarity=0.806 Sum_probs=89.5
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeecc
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
|+++|++|||||||+.+|..+.|...+.+|+.+.+...+.+++..+.+.+||+++...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------------------- 59 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDY--------------------- 59 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCccc---------------------
Confidence 58999999999999999999999999999999888888899999999999998872211
Q ss_pred CCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee
Q psy9997 86 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI 165 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (330)
..+++.+++++|+++++||... ..+++ .....|+..+
T Consensus 60 ---------------------------------------~~~~~~~~~~~d~~ilv~d~~~--~~s~~--~~~~~~~~~i 96 (174)
T smart00174 60 ---------------------------------------DRLRPLSYPDTDVFLICFSVDS--PASFE--NVKEKWYPEV 96 (174)
T ss_pred ---------------------------------------chhchhhcCCCCEEEEEEECCC--HHHHH--HHHHHHHHHH
Confidence 2345668999999999998432 12221 1113465555
Q ss_pred eccCCCcccccccceeeccCC
Q psy9997 166 STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 166 ~~~~~~~~~~~~~g~~~~~~~ 186 (330)
... .+..|+.++|+|.|+..
T Consensus 97 ~~~-~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 97 KHF-CPNTPIILVGTKLDLRE 116 (174)
T ss_pred Hhh-CCCCCEEEEecChhhhh
Confidence 433 35789999999999853
No 244
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.48 E-value=6.2e-14 Score=120.12 Aligned_cols=118 Identities=20% Similarity=0.296 Sum_probs=91.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.||++..+ ...+.+++..+.+++||+++...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----------------- 68 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF----------------- 68 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH-----------------
Confidence 68999999999999999999999999999999998555 668888899999999988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..|+++++++++|||.+.. . ....+..|
T Consensus 69 -------------------------------------------~~~~~~~~~~a~~iilv~D~~~~--~---s~~~~~~~ 100 (199)
T cd04110 69 -------------------------------------------RTITSTYYRGTHGVIVVYDVTNG--E---SFVNVKRW 100 (199)
T ss_pred -------------------------------------------HHHHHHHhCCCcEEEEEEECCCH--H---HHHHHHHH
Confidence 33456789999999999985432 2 22345566
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ..+..|+.++|+|.|+..
T Consensus 101 ~~~i~~-~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 101 LQEIEQ-NCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHH-hCCCCCEEEEEECccccc
Confidence 665433 235678889999999853
No 245
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.48 E-value=4.7e-14 Score=116.91 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=93.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.++..+.|...+.+|++..+ .+.+.+++..+.+.+||+++..++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------------- 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF---------------- 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH----------------
Confidence 468999999999999999999999999999999997544 678888999899999998872221
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|+++++||.... .....+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~~llv~d~~~~-----~s~~~~~~ 96 (165)
T cd01864 66 --------------------------------------------RTITQSYYRSANGAIIAYDITRR-----SSFESVPH 96 (165)
T ss_pred --------------------------------------------HHHHHHHhccCCEEEEEEECcCH-----HHHHhHHH
Confidence 22455678999999999985421 12234556
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++|+|.|+.
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccc
Confidence 7776665556678889999999985
No 246
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.48 E-value=5.6e-14 Score=116.98 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=89.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+||+++|++|||||||+.+|..+.|.+.+.+|++..+ .+.+.+++..+.+++||++++.++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------------- 67 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF--------------- 67 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH---------------
Confidence 3579999999999999999999999999999999998655 568889999999999988872221
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..++..+++++|+++++|+.... . ....+.
T Consensus 68 ---------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~ 97 (170)
T cd04116 68 ---------------------------------------------RSLRTPFYRGSDCCLLTFAVDDS--Q---SFQNLS 97 (170)
T ss_pred ---------------------------------------------HHhHHHHhcCCCEEEEEEECCCH--H---HHHhHH
Confidence 34566789999999999973321 1 122333
Q ss_pred Ccceeeec----cCCCcccccccceeeccC
Q psy9997 160 GWFWFIST----EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~----~~~~~~~~~~~g~~~~~~ 185 (330)
.|...+.. ......|+.++|||.|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 44443322 123567889999999984
No 247
>KOG0076|consensus
Probab=99.47 E-value=1.4e-14 Score=116.21 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=86.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+||..||+..++++..+|..++++|.++|.++++-|+.....+-..+.+. ..++|+++.+||.|+...
T Consensus 71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--------- 141 (197)
T KOG0076|consen 71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--------- 141 (197)
T ss_pred eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh---------
Confidence 4566666668888999999999999999999999999999884444444332 368999999999999754
Q ss_pred CCCCCcCHHHHH---HHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 271 NKQKPISFEQGE---KLAKELK--AVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 271 ~~~~~v~~~~~~---~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
....+.. ..++..+ .+++..+||.+|.||++..++++..+-++
T Consensus 142 -----~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 142 -----MEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred -----hhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2222222 2222222 25799999999999999999999998876
No 248
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.47 E-value=1e-13 Score=118.04 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=87.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|+++.|.. .|.+|++..+ .+.+.+++..+.+++||+++..++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------------- 63 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY----------------- 63 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 599999999999999999999999985 7899998776 568899999999999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+|+++|++++|||.... .+ ...+..|
T Consensus 64 -------------------------------------------~~~~~~~~~~~d~iilv~d~~~~--~s---~~~~~~~ 95 (193)
T cd04118 64 -------------------------------------------EAMSRIYYRGAKAAIVCYDLTDS--SS---FERAKFW 95 (193)
T ss_pred -------------------------------------------hhhhHhhcCCCCEEEEEEECCCH--HH---HHHHHHH
Confidence 23455688999999999984321 11 2233445
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+... .+..|+.++|+|.|+.
T Consensus 96 ~~~i~~~-~~~~piilv~nK~Dl~ 118 (193)
T cd04118 96 VKELQNL-EEHCKIYLCGTKSDLI 118 (193)
T ss_pred HHHHHhc-CCCCCEEEEEEccccc
Confidence 5544332 3467899999999984
No 249
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=4.7e-14 Score=121.97 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=90.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEE-CCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMI-GGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++||+++|++|||||||+++|..+.|...+.||++.. +.+.+.+ ++..+.+++||+++..++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------------- 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF---------------- 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH----------------
Confidence 5899999999999999999999999999999999744 4667777 577899999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+...||+++|++++|||... ......+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~iilv~D~~~-----~~Sf~~l~~ 96 (211)
T cd04111 66 --------------------------------------------RSITRSYYRNSVGVLLVFDITN-----RESFEHVHD 96 (211)
T ss_pred --------------------------------------------HHHHHHHhcCCcEEEEEEECCC-----HHHHHHHHH
Confidence 3345678999999999998432 122335566
Q ss_pred cceeeeccCC-CcccccccceeeccCC
Q psy9997 161 WFWFISTEHS-PPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~g~~~~~~~ 186 (330)
|+..+..... ...++.++|+|.|+..
T Consensus 97 ~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 97 WLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 7766654332 3456788999999864
No 250
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.47 E-value=5e-14 Score=118.41 Aligned_cols=119 Identities=23% Similarity=0.311 Sum_probs=88.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC----------CEEEEEEEeecCCceeEeEEEeec
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG----------GEPYTLGLNFARTMQTIKCVVVGD 71 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~ki~vvG~ 71 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+. +..+.+++||++++.++
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------- 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence 58999999999999999999999999999999998655 4455543 46788999988872221
Q ss_pred CCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhh
Q psy9997 72 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRS 151 (330)
Q Consensus 72 ~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~ 151 (330)
..++..+++++|++++|||... .
T Consensus 77 -----------------------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~-- 99 (180)
T cd04127 77 -----------------------------------------------------RSLTTAFFRDAMGFLLIFDLTN--E-- 99 (180)
T ss_pred -----------------------------------------------------HHHHHHHhCCCCEEEEEEECCC--H--
Confidence 3345678999999999998442 1
Q ss_pred cccccccCCcceeeecc-CCCcccccccceeeccCC
Q psy9997 152 VDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
.....+..|+..+... ..+..|+.++|+|.|+..
T Consensus 100 -~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 100 -QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred -HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 2223345566655443 345678899999999853
No 251
>KOG1423|consensus
Probab=99.47 E-value=2.3e-13 Score=118.94 Aligned_cols=188 Identities=17% Similarity=0.121 Sum_probs=110.6
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+.+++||.+|+|||+|.|++++.+............-...-.+......+.++||||.-.....+.
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~---------- 138 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR---------- 138 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh----------
Confidence 3567899999999999999999999988643322222111111122334456678899999611000000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
...+ ..+-+-.......||.+++
T Consensus 139 ----------------------------------------~~l~-----------------~s~lq~~~~a~q~AD~vvV 161 (379)
T KOG1423|consen 139 ----------------------------------------HHLM-----------------MSVLQNPRDAAQNADCVVV 161 (379)
T ss_pred ----------------------------------------HHHH-----------------HHhhhCHHHHHhhCCEEEE
Confidence 0000 0011112234567999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCC-CCc---CHHHHHHHHHHh-------
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ-KPI---SFEQGEKLAKEL------- 288 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~-~~v---~~~~~~~~~~~~------- 288 (330)
++|+++....-+.+ .+..+... +++|-++|.||.|+.....-+-.++..-. .++ ..+..++|...-
T Consensus 162 v~Das~tr~~l~p~--vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~ 238 (379)
T KOG1423|consen 162 VVDASATRTPLHPR--VLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRT 238 (379)
T ss_pred EEeccCCcCccChH--HHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCccccccc
Confidence 99999855443332 44444443 68999999999999876443332221111 111 222222222211
Q ss_pred -----CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 289 -----KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 289 -----~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+.-.+|.+||++|+|++++-++++..+..
T Consensus 239 ~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 239 ICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 01248999999999999999999887753
No 252
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.46 E-value=1.7e-13 Score=114.40 Aligned_cols=118 Identities=49% Similarity=0.866 Sum_probs=89.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+++|..+.|.+.+.||+.+.+...+.+++..+.+++||+++...+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------- 61 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY------------------- 61 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc-------------------
Confidence 6999999999999999999999999999999998888888889999999999998872211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..++++++++++||+.... .++ ......|+.
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~ilv~~~~~~--~s~--~~~~~~~~~ 96 (174)
T cd04135 62 -----------------------------------------DRLRPLSYPMTDVFLICFSVVNP--ASF--QNVKEEWVP 96 (174)
T ss_pred -----------------------------------------cccccccCCCCCEEEEEEECCCH--HHH--HHHHHHHHH
Confidence 22355678999999999974321 221 111123544
Q ss_pred eeeccCCCcccccccceeeccCC
Q psy9997 164 FISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+... .+..|+.++|+|.|+..
T Consensus 97 ~l~~~-~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 97 ELKEY-APNVPYLLVGTQIDLRD 118 (174)
T ss_pred HHHhh-CCCCCEEEEeEchhhhc
Confidence 44333 56788899999999853
No 253
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.46 E-value=1.3e-13 Score=130.59 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=74.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh----hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|..........+|++++|+|++++ .+.+.+. .+.. ....|+++|+||+|+..+..
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-----~l~~-~~i~~iiVVlNK~Dl~~~~~--- 156 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-----ALDI-IGIKNIVIVQNKIDLVSKER--- 156 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-----HHHH-cCCCcEEEEEEeeccccchh---
Confidence 456788888888765544455678999999999954 3333332 1211 12347999999999975311
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.....++...+++.. ...+++++||++|.|++++++.+...+-.+
T Consensus 157 -------~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 157 -------ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred -------HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 111223444454432 126899999999999999999998876544
No 254
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.46 E-value=1.5e-13 Score=135.76 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=70.1
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhh
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~ 269 (330)
+||++|++.|.......+..+|++++|+|+++ +.+.+.+. ++ .. .++| +++|+||+|+.....
T Consensus 55 ~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~--il---~~--lgi~~iIVVlNKiDlv~~~~------ 121 (614)
T PRK10512 55 FIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA--IL---QL--TGNPMLTVALTKADRVDEAR------ 121 (614)
T ss_pred EEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH--HH---HH--cCCCeEEEEEECCccCCHHH------
Confidence 44444446665555556788999999999986 55555543 22 21 2355 689999999964311
Q ss_pred hCCCCCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 270 KNKQKPISFEQGEKLAKELK--AVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.....++..++....+ ..+++++||++|.|++++++.+.....
T Consensus 122 ----~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 122 ----IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred ----HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 1112345555555443 257999999999999999999876543
No 255
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.46 E-value=1.1e-13 Score=118.44 Aligned_cols=126 Identities=23% Similarity=0.298 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++||..+.|+..+.||++.. +...+.+++..+.+++||+++.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~----------------- 63 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP----------------- 63 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-----------------
Confidence 699999999999999999999999999999999744 46678889999999999988722110
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
.+.|++. ......+++++|++++|||... . .....+..|.
T Consensus 64 ----------------------------------~~~~~e~-~~~~~~~~~~ad~iilv~D~~~--~---~S~~~~~~~~ 103 (198)
T cd04142 64 ----------------------------------GTAGQEW-MDPRFRGLRNSRAFILVYDICS--P---DSFHYVKLLR 103 (198)
T ss_pred ----------------------------------ccchhHH-HHHHHhhhccCCEEEEEEECCC--H---HHHHHHHHHH
Confidence 1122221 1123456789999999998542 2 2223444555
Q ss_pred eeeecc---CCCcccccccceeeccCC
Q psy9997 163 WFISTE---HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~---~~~~~~~~~~g~~~~~~~ 186 (330)
..+... ..+..|+.++|||.|+..
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccc
Confidence 444332 256789999999999953
No 256
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.45 E-value=1.8e-13 Score=113.82 Aligned_cols=118 Identities=25% Similarity=0.366 Sum_probs=90.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+++|.++.|...+.+|+++.+.+.+.+++..+.+++||+++...+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------ 62 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF------------------ 62 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccc------------------
Confidence 48999999999999999999999999999999999888888899999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.+++++++++++|+.... .++ .....|.
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~vlv~~~~~~--~s~---~~~~~~~ 95 (168)
T cd04177 63 ------------------------------------------TAMRELYIKSGQGFLLVYSVTSE--ASL---NELGELR 95 (168)
T ss_pred ------------------------------------------hhhhHHHHhhCCEEEEEEECCCH--HHH---HHHHHHH
Confidence 34567789999999999974431 111 1223344
Q ss_pred eeeec-cCCCcccccccceeeccC
Q psy9997 163 WFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ......|+..+|||.|+.
T Consensus 96 ~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 96 EQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred HHHHHhhCCCCCCEEEEEEChhcc
Confidence 43332 234567888899999984
No 257
>KOG0074|consensus
Probab=99.45 E-value=7e-14 Score=108.42 Aligned_cols=159 Identities=23% Similarity=0.273 Sum_probs=110.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
++.+++||.++|-.++|||+|++++..+.. ....||-|.+..+ +.. ...+.+.+||.+|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~-v~~-~g~f~LnvwDiGGq----------------- 72 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKK-VEY-DGTFHLNVWDIGGQ----------------- 72 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEE-Eee-cCcEEEEEEecCCc-----------------
Confidence 446789999999999999999999987652 3334444433322 222 34567777777777
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
...+..|..||++.|++|
T Consensus 73 --------------------------------------------------------------r~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 73 --------------------------------------------------------------RGIRPYWSNYYENVDGLI 90 (185)
T ss_pred --------------------------------------------------------------cccchhhhhhhhccceEE
Confidence 445566777888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH----HHHHhCCeeE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK----LAKELKAVKY 293 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~ 293 (330)
.|.|.+|...|+++.+.+.+.+... ...+|+.+.+||.|+..+.... +.+.. ..+.. .+.+
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-------------eia~klnl~~lrdR-swhI 156 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-------------EIALKLNLAGLRDR-SWHI 156 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-------------HHHHhcchhhhhhc-eEEe
Confidence 9999999999998885554444332 2689999999999998753211 11111 11111 2568
Q ss_pred EEEeeccCCCHHHHHHHHHH
Q psy9997 294 VECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~ 313 (330)
-++||..++|+..-.+++..
T Consensus 157 q~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred eeCccccccCccCcchhhhc
Confidence 89999999999887776654
No 258
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.45 E-value=1.1e-13 Score=114.65 Aligned_cols=118 Identities=16% Similarity=0.254 Sum_probs=92.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.|...+.||++..+ .+.+.+++..+.+++||+++..++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------------- 65 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY----------------- 65 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-----------------
Confidence 57999999999999999999999999999999998655 668888999999999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+++.+++++++++++||.+. .. ....+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~~---s~~~~~~~ 97 (165)
T cd01868 66 -------------------------------------------RAITSAYYRGAVGALLVYDITK--KQ---TFENVERW 97 (165)
T ss_pred -------------------------------------------HHHHHHHHCCCCEEEEEEECcC--HH---HHHHHHHH
Confidence 3345667899999999998542 12 23455567
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........|+.++|+|.|+.
T Consensus 98 ~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 98 LKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred HHHHHHhCCCCCeEEEEEECcccc
Confidence 776655554568899999999985
No 259
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.45 E-value=6.3e-13 Score=115.67 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH---HhhhCCC----C-----CcCHHH
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE---KLAKNKQ----K-----PISFEQ 280 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~---~~~~~~~----~-----~v~~~~ 280 (330)
.+|++++|.|+.....-... .++..+.. .+.|+++|.||+|+........ ++...-. . .-+.++
T Consensus 109 ~~D~~llVvda~~g~~~~d~--~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~ 184 (224)
T cd04165 109 APDYAMLVVAANAGIIGMTK--EHLGLALA--LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDD 184 (224)
T ss_pred CCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccc
Confidence 68999999998765432222 23433433 3689999999999865321111 0000000 0 000011
Q ss_pred HHHHHHHh---CCeeEEEEeeccCCCHHHHHHHHH
Q psy9997 281 GEKLAKEL---KAVKYVECSALTQKGLKNVFDEAI 312 (330)
Q Consensus 281 ~~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~ 312 (330)
+...+... ...++|.+||.+|.|++++...|.
T Consensus 185 ~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 185 VVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred eeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 11111111 125899999999999999987764
No 260
>KOG0081|consensus
Probab=99.45 E-value=1.4e-15 Score=120.02 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=101.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+|++.+||+||||||++-||.++.|....++|++-.|.. +.+. +.+ -|+.|+|+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFre------Krvv----Y~s---------~gp~g~gr------- 63 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFRE------KRVV----YNS---------SGPGGGGR------- 63 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeeccccc------ceEE----Eec---------cCCCCCCc-------
Confidence 688999999999999999999999999999999755531 1111 111 25666664
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec--cccchhhhcccccccCCc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG--NMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~--~~~~~~~~~~~~~~~~~~ 161 (330)
+..+.+++|||+|||+|++|+..|||+|=++++.|| +.+|+- ...+|
T Consensus 64 ------------------------~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFL-------nvrnW 112 (219)
T KOG0081|consen 64 ------------------------GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFL-------NVRNW 112 (219)
T ss_pred ------------------------ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHH-------HHHHH
Confidence 456789999999999999999999999999999996 333333 44566
Q ss_pred ceeeecc-CCCcccccccceeeccCCCcccc
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINPGWVRD 191 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 191 (330)
+.++..| .+....+.+.|+|.|+...+.++
T Consensus 113 lSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 113 LSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred HHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 7666665 56777899999999997655553
No 261
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.44 E-value=1.5e-13 Score=114.42 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=93.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 66 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF----------------- 66 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 68999999999999999999999999999999987555 567888999999999988762111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+...+++++|+++++||... . .....+..|
T Consensus 67 -------------------------------------------~~~~~~~~~~~d~il~v~d~~~--~---~s~~~~~~~ 98 (168)
T cd01866 67 -------------------------------------------RSITRSYYRGAAGALLVYDITR--R---ETFNHLTSW 98 (168)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCC--H---HHHHHHHHH
Confidence 2334567899999999998442 2 223456678
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++|+|.|+.
T Consensus 99 ~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 99 LEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHhCCCCCcEEEEEECcccc
Confidence 777766556788999999999985
No 262
>PLN03108 Rab family protein; Provisional
Probab=99.43 E-value=1.8e-13 Score=118.21 Aligned_cols=119 Identities=18% Similarity=0.312 Sum_probs=91.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|+.|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+++||+++...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~----------------- 68 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF----------------- 68 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 58999999999999999999999999999999998665 567888999999999988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 69 -------------------------------------------~~~~~~~~~~ad~~vlv~D~~~~-----~s~~~l~~~ 100 (210)
T PLN03108 69 -------------------------------------------RSITRSYYRGAAGALLVYDITRR-----ETFNHLASW 100 (210)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCcH-----HHHHHHHHH
Confidence 23456678999999999985431 122344556
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+..+++|.|+..
T Consensus 101 ~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 101 LEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHhcCCCCcEEEEEECccCcc
Confidence 6555444456788999999999854
No 263
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.43 E-value=1.7e-13 Score=116.64 Aligned_cols=117 Identities=19% Similarity=0.337 Sum_probs=89.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|..+.|.. .+.+|++..+ ...+.+++..+.+++||+++..++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 63 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF----------------- 63 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-----------------
Confidence 699999999999999999999999964 6888988666 457788999999999998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 64 -------------------------------------------~~~~~~~~~~ad~~i~v~D~~~~-----~s~~~~~~~ 95 (191)
T cd04112 64 -------------------------------------------RSVTHAYYRDAHALLLLYDITNK-----ASFDNIRAW 95 (191)
T ss_pred -------------------------------------------HHhhHHHccCCCEEEEEEECCCH-----HHHHHHHHH
Confidence 22345678999999999984432 122334447
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........|+.++|||.|+.
T Consensus 96 ~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 96 LTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHHHHHhCCCCCcEEEEEEcccch
Confidence 666655555578899999999984
No 264
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.43 E-value=1.3e-13 Score=113.68 Aligned_cols=117 Identities=16% Similarity=0.278 Sum_probs=88.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC--CEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG--GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+. +..+.+++||+++..++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------- 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF---------------- 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH----------------
Confidence 5999999999999999999999999999999998666 5577777 88899999988862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|+++++++++||+.... . ....+..
T Consensus 65 --------------------------------------------~~~~~~~~~~~~~~v~v~d~~~~--~---s~~~l~~ 95 (162)
T cd04106 65 --------------------------------------------DAITKAYYRGAQACILVFSTTDR--E---SFEAIES 95 (162)
T ss_pred --------------------------------------------HHhHHHHhcCCCEEEEEEECCCH--H---HHHHHHH
Confidence 33456789999999999974421 1 2234455
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|...+.. ..+..|+.++++|.|+..
T Consensus 96 ~~~~~~~-~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 96 WKEKVEA-ECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHHHHH-hCCCCCEEEEEEChhccc
Confidence 6655432 235678999999999853
No 265
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.43 E-value=1.8e-13 Score=112.83 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=91.4
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++..+.+++||+++...+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~------------------ 62 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF------------------ 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH------------------
Confidence 6999999999999999999999999999999997555 567888898999999988862111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+++++++++++||.... .....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~~ 95 (161)
T cd04113 63 ------------------------------------------RSVTRSYYRGAAGALLVYDITNR-----TSFEALPTWL 95 (161)
T ss_pred ------------------------------------------HHhHHHHhcCCCEEEEEEECCCH-----HHHHHHHHHH
Confidence 22345678899999999984431 1223455677
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
........+..|+.++|+|.|+.
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcc
Confidence 66665666788999999999985
No 266
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.43 E-value=1.2e-13 Score=114.55 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=86.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|+.+.|..++.+|....+...+.+++..+.+++||+++....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------------- 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA-------------------- 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCccc--------------------
Confidence 799999999999999999999999999999998888888899999999999988872210
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+ .. . ...+++++|+++++||.... .+ ...+..|...
T Consensus 61 ---~------------------------------~~----~--~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~~~~ 96 (165)
T cd04146 61 ---D------------------------------TE----Q--LERSIRWADGFVLVYSITDR--SS---FDEISQLKQL 96 (165)
T ss_pred ---c------------------------------cc----h--HHHHHHhCCEEEEEEECCCH--HH---HHHHHHHHHH
Confidence 0 00 0 12367889999999984321 22 2334445544
Q ss_pred eeccC--CCcccccccceeeccC
Q psy9997 165 ISTEH--SPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~~--~~~~~~~~~g~~~~~~ 185 (330)
+.... .+..|+.++|+|.|+.
T Consensus 97 ~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 97 IREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred HHHHhcCCCCCCEEEEEECCchH
Confidence 43322 4578899999999984
No 267
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.42 E-value=4.9e-13 Score=111.75 Aligned_cols=118 Identities=39% Similarity=0.684 Sum_probs=87.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
..||+++|++|||||||+.+|..+.|++.|.||+++.+...+.+++..+.+.+||+++...+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------------------ 62 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY------------------ 62 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhh------------------
Confidence 36999999999999999999999999999999999888778889999999999998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..++..+++++|+++++|+.... .++. .-...|.
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~i~v~~~~~~--~s~~--~~~~~~~ 96 (175)
T cd01870 63 ------------------------------------------DRLRPLSYPDTDVILMCFSIDSP--DSLE--NIPEKWT 96 (175)
T ss_pred ------------------------------------------hhccccccCCCCEEEEEEECCCH--HHHH--HHHHHHH
Confidence 22344568899999999974321 1111 1112343
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ..+..|+.++|+|.|+.
T Consensus 97 ~~~~~-~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 97 PEVKH-FCPNVPIILVGNKKDLR 118 (175)
T ss_pred HHHHh-hCCCCCEEEEeeChhcc
Confidence 33322 23567899999999984
No 268
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.41 E-value=1.7e-13 Score=118.87 Aligned_cols=122 Identities=24% Similarity=0.307 Sum_probs=95.9
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|..+||+++|++|||||||+.+|..+.|...+.+|++..+ .......+..+++.+||+++..++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~--------------- 67 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY--------------- 67 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH---------------
Confidence 5679999999999999999999999999999999998777 445555566899999999983333
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+.+++.||+++++++++|+... .........
T Consensus 68 ---------------------------------------------~~~~~~y~~~~~~~l~~~d~~~----~~~~~~~~~ 98 (219)
T COG1100 68 ---------------------------------------------RSLRPEYYRGANGILIVYDSTL----RESSDELTE 98 (219)
T ss_pred ---------------------------------------------HHHHHHHhcCCCEEEEEEeccc----chhhhHHHH
Confidence 5678889999999999998654 122233455
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+........++.++|+|.|+..
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred HHHHHHHHhCCCCceEEEEeccccccc
Confidence 666555554446788999999999853
No 269
>PRK10218 GTP-binding protein; Provisional
Probab=99.41 E-value=6e-13 Score=130.75 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=71.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+||++|+..|...+..+++.+|++++|+|+++....+... ++..+.. .++|.++|.||+|+......
T Consensus 70 inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~--~l~~a~~--~gip~IVviNKiD~~~a~~~------- 138 (607)
T PRK10218 70 INIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRF--VTKKAFA--YGLKPIVVINKVDRPGARPD------- 138 (607)
T ss_pred EEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHH--HHHHHHH--cCCCEEEEEECcCCCCCchh-------
Confidence 344555555767666677888999999999998753333222 2333322 37899999999999754211
Q ss_pred CCCCcCHHHHHHHHHHh------CCeeEEEEeeccCC----------CHHHHHHHHHHHhcCC
Q psy9997 272 KQKPISFEQGEKLAKEL------KAVKYVECSALTQK----------GLKNVFDEAILAALEP 318 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~------~~~~~~e~Sa~~~~----------~v~~~f~~l~~~i~~~ 318 (330)
-..++...+.... ..++++.+||++|. |+..+|+.++..+-.+
T Consensus 139 ----~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 139 ----WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ----HHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 1112232322111 12679999999998 5888888888777544
No 270
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.41 E-value=4.2e-13 Score=124.41 Aligned_cols=160 Identities=23% Similarity=0.287 Sum_probs=112.1
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
-+|++++|.||+|||||+|.|.+.. .....+.|.-+.....+.++|.+ +.+.||+|.+....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d-------------- 280 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDD-------------- 280 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCcc--------------
Confidence 4899999999999999999999875 46667777777777788888765 56789999832111
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+....|.++-. ..+++||.++++
T Consensus 281 -----------------------------------------------------~VE~iGIeRs~----~~i~~ADlvL~v 303 (454)
T COG0486 281 -----------------------------------------------------VVERIGIERAK----KAIEEADLVLFV 303 (454)
T ss_pred -----------------------------------------------------HHHHHHHHHHH----HHHHhCCEEEEE
Confidence 11112223322 246789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+|.+.+.+-.+.. .+. ....+.|+++|.||.|+..... .+. . +.....+++.+||++
T Consensus 304 ~D~~~~~~~~d~~--~~~---~~~~~~~~i~v~NK~DL~~~~~--------------~~~---~-~~~~~~~~i~iSa~t 360 (454)
T COG0486 304 LDASQPLDKEDLA--LIE---LLPKKKPIIVVLNKADLVSKIE--------------LES---E-KLANGDAIISISAKT 360 (454)
T ss_pred EeCCCCCchhhHH--HHH---hcccCCCEEEEEechhcccccc--------------cch---h-hccCCCceEEEEecC
Confidence 9999874444433 222 2335799999999999987521 011 1 112224689999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++.+.+++...+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999988777554
No 271
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.41 E-value=3.2e-13 Score=117.13 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=81.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.||..+.|.. +.||++..+ .... ..+.+.+||+++...+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~------------------ 57 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQF------------------ 57 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccc------------------
Confidence 699999999999999999999999975 688887544 3222 4678899998872211
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.+++.||++++++|+|||... ..+ ...+..|+
T Consensus 58 ------------------------------------------~~l~~~~~~~ad~~IlV~Dvt~--~~S---f~~l~~~~ 90 (220)
T cd04126 58 ------------------------------------------HGLGSMYCRGAAAVILTYDVSN--VQS---LEELEDRF 90 (220)
T ss_pred ------------------------------------------hhhHHHHhccCCEEEEEEECCC--HHH---HHHHHHHH
Confidence 3456678999999999998443 122 22344455
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.....+..++.++|||.|+.
T Consensus 91 ~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 91 LGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred HHHHHhcCCCCcEEEEEECcccc
Confidence 44444445667899999999984
No 272
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.40 E-value=3.8e-13 Score=132.24 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=75.3
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+|||+|++.|......+++.+|++++|+|+++.. +.... .|+..+.. .++|+++|+||+|+.....
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~-~~l~~a~~--~~ip~IVviNKiD~~~a~~-------- 133 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTR-FVLKKALE--LGLKPIVVINKIDRPSARP-------- 133 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHH-HHHHHHHH--CCCCEEEEEECCCCCCcCH--------
Confidence 345666666777766677788999999999998632 22223 45555544 3789999999999965311
Q ss_pred CCCCcCHHHHHHHHHHhC------CeeEEEEeeccCC----------CHHHHHHHHHHHhcCCC
Q psy9997 272 KQKPISFEQGEKLAKELK------AVKYVECSALTQK----------GLKNVFDEAILAALEPP 319 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~----------~v~~~f~~l~~~i~~~~ 319 (330)
..+ .++...+....+ .++++.+||++|. |++.+|+.++..+-.+.
T Consensus 134 --~~v-~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 134 --DEV-VDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred --HHH-HHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 011 123333332111 2579999999996 79999999998876553
No 273
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.40 E-value=5e-13 Score=119.93 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=46.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCC----------CCCceeec-ceEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSE----------YVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+++|++|+|||||++++++..+... ..+|.... +...+..++..+.+.+|||+|.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 58999999999999999999999876543 34555433 3446667788899999999997
No 274
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.39 E-value=5.8e-13 Score=116.96 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=76.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhh--HHhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTL--EKLA 269 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~--~~~~ 269 (330)
+.+|||+|+..|......+++.+|++++|+|.++....... .+...+.. .++|+++|+||+|+....... .++.
T Consensus 66 i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~--~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~ 141 (237)
T cd04168 66 VNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTR--ILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIK 141 (237)
T ss_pred EEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHH
Confidence 45566666677766666778899999999999876543322 34444443 378999999999997543111 0110
Q ss_pred h-------------------------------------------CCCCCcCHHHHHHHHH----HhCCeeEEEEeeccCC
Q psy9997 270 K-------------------------------------------NKQKPISFEQGEKLAK----ELKAVKYVECSALTQK 302 (330)
Q Consensus 270 ~-------------------------------------------~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~ 302 (330)
. -....++.++..+-.+ ....+|++-.||.++.
T Consensus 142 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~ 221 (237)
T cd04168 142 EKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI 221 (237)
T ss_pred HHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc
Confidence 0 0012344444332221 2223678888999999
Q ss_pred CHHHHHHHHHHHh
Q psy9997 303 GLKNVFDEAILAA 315 (330)
Q Consensus 303 ~v~~~f~~l~~~i 315 (330)
|+..+++.+.+.+
T Consensus 222 Gv~~ll~~~~~~~ 234 (237)
T cd04168 222 GIEELLEGITKLF 234 (237)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999988764
No 275
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.39 E-value=3.5e-13 Score=116.26 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=67.1
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|++.|.......++.+|++++|+|+++...-+... ....+ ......|+|+|.||+|+.......
T Consensus 78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~--~~~~~-~~~~~~~iIvviNK~D~~~~~~~~----- 149 (208)
T cd04166 78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR--HSYIL-SLLGIRHVVVAVNKMDLVDYSEEV----- 149 (208)
T ss_pred eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH--HHHHH-HHcCCCcEEEEEEchhcccCCHHH-----
Confidence 4567899998887655555688999999999998753222211 11112 222235688899999996431100
Q ss_pred CCCCCcCHHHHHHHHHHhCC--eeEEEEeeccCCCHHHH
Q psy9997 271 NKQKPISFEQGEKLAKELKA--VKYVECSALTQKGLKNV 307 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~~ 307 (330)
.....++.+.+.+.++. .+++.+||++|.|+++.
T Consensus 150 ---~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 ---FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred ---HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 00122455566666652 45899999999999753
No 276
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.38 E-value=6.9e-13 Score=109.40 Aligned_cols=119 Identities=18% Similarity=0.344 Sum_probs=91.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++||+++|++|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||+++..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~------------------- 61 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE------------------- 61 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH-------------------
Confidence 58999999999999999999999999888999998666 6788999999999999887611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++ ..++..+++++|+++++||... .........|
T Consensus 62 -----~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~-----~~s~~~~~~~ 95 (163)
T cd01860 62 -----RY------------------------------------RSLAPMYYRGAAAAIVVYDITS-----EESFEKAKSW 95 (163)
T ss_pred -----HH------------------------------------HHHHHHHhccCCEEEEEEECcC-----HHHHHHHHHH
Confidence 11 2234567899999999998442 1122344566
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+..+..+..++..+++|.|+..
T Consensus 96 ~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 96 VKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 6666555557788899999999853
No 277
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.37 E-value=5.4e-13 Score=110.04 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=91.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+++||+++..+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------------------ 62 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF------------------ 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH------------------
Confidence 6999999999999999999999999999999998655 567888999999999987762111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+...+++++|+++++||... ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~~ilv~d~~~-----~~s~~~~~~~l 95 (164)
T smart00175 63 ------------------------------------------RSITSSYYRGAVGALLVYDITN-----RESFENLKNWL 95 (164)
T ss_pred ------------------------------------------HHHHHHHhCCCCEEEEEEECCC-----HHHHHHHHHHH
Confidence 2234567889999999998432 11223445577
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+..+..+..|+..+++|.|+..
T Consensus 96 ~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 96 KELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHhCCCCCeEEEEEEchhccc
Confidence 766665557899999999999854
No 278
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.36 E-value=3.8e-13 Score=111.56 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=82.6
Q ss_pred EEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeecc
Q psy9997 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTT 85 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~ 85 (330)
|+++|++|||||||+.+|..+.|...+.||++..+ ..++...+.+.+||+++..++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~--------------------- 57 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNL--------------------- 57 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcch---------------------
Confidence 79999999999999999999999999999997543 345666788999988762221
Q ss_pred CCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee
Q psy9997 86 NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI 165 (330)
Q Consensus 86 ~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (330)
+.+++.||+++|++++|||.+... .+ .....|+..+
T Consensus 58 ---------------------------------------~~~~~~~~~~ad~ii~V~D~t~~~--s~---~~~~~~l~~~ 93 (164)
T cd04162 58 ---------------------------------------RKYWKRYLSGSQGLIFVVDSADSE--RL---PLARQELHQL 93 (164)
T ss_pred ---------------------------------------hHHHHHHHhhCCEEEEEEECCCHH--HH---HHHHHHHHHH
Confidence 345667899999999999855432 11 1223444433
Q ss_pred eccCCCcccccccceeeccCCC
Q psy9997 166 STEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 166 ~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
... .+..|+.++|||.|+...
T Consensus 94 ~~~-~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 94 LQH-PPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HhC-CCCCcEEEEEeCcCCcCC
Confidence 322 267889999999998643
No 279
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=5.6e-12 Score=98.97 Aligned_cols=72 Identities=32% Similarity=0.437 Sum_probs=51.9
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL 288 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 288 (330)
+++.++++++||+.+++++++.+ |...+.... .++|.++++||.|+..+ +.+..+++.
T Consensus 43 ~~~s~~~~~~v~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~~------ 101 (124)
T smart00010 43 SYESFDVVLQCWRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEGL------ 101 (124)
T ss_pred ccCCCCEEEEEEEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHHH------
Confidence 45567899999999999999765 666665443 56899999999998543 334433332
Q ss_pred CCeeEEEEeeccCCCHH
Q psy9997 289 KAVKYVECSALTQKGLK 305 (330)
Q Consensus 289 ~~~~~~e~Sa~~~~~v~ 305 (330)
.|+++||+++.|+.
T Consensus 102 ---~~~~~s~~~~~~~~ 115 (124)
T smart00010 102 ---EFAETSAKTPEEGE 115 (124)
T ss_pred ---HHHHHhCCCcchhh
Confidence 35567889999874
No 280
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.36 E-value=8.6e-13 Score=108.61 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=88.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.++..+.|...+.++.+.. +.+.+.+++..+.+.+||+++..+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~------------------ 62 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF------------------ 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH------------------
Confidence 589999999999999999999999999999998744 4778888998899999988761111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+...+++.++++++|||... ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~ii~v~d~~~-----~~s~~~~~~~~ 95 (161)
T cd01861 63 ------------------------------------------RSLIPSYIRDSSVAVVVYDITN-----RQSFDNTDKWI 95 (161)
T ss_pred ------------------------------------------HHHHHHHhccCCEEEEEEECcC-----HHHHHHHHHHH
Confidence 2234567889999999998432 11223455666
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+........|+.++++|.|+.
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhcc
Confidence 66554444478899999999984
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.35 E-value=2.4e-12 Score=113.58 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=80.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
++++.+.+.+++++|++++|||++++. +|+.+. .|+..+.. .++|+++|+||+||... +.+..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~------------~~~~~~ 88 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDD------------EDMEKE 88 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCC------------HHHHHH
Confidence 889999999999999999999999888 899987 89877654 58999999999999654 334445
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
++..+. +.+ .+++++||++|.|++++|+.+..
T Consensus 89 ~~~~~~-~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 89 QLDIYR-NIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHH-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 555554 455 68999999999999999997754
No 282
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.35 E-value=7.7e-13 Score=109.30 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=85.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC--CCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~--~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+||+++|++|||||||+.++..+ .|++++.+|++..+ .+.+.++ +..+.+.+||+++....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------------- 65 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY--------------- 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH---------------
Confidence 59999999999999999999865 79999999997554 5566665 67799999988862211
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..+...+++++|+++++||.+. ..+ ...+.
T Consensus 66 ---------------------------------------------~~~~~~~~~~~d~ii~v~d~~~--~~s---~~~~~ 95 (164)
T cd04101 66 ---------------------------------------------SDMVSNYWESPSVFILVYDVSN--KAS---FENCS 95 (164)
T ss_pred ---------------------------------------------HHHHHHHhCCCCEEEEEEECcC--HHH---HHHHH
Confidence 2234567889999999998432 111 23455
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+.... +..|+.++|+|.|+..
T Consensus 96 ~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 96 RWVNKVRTAS-KHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHHHHhC-CCCCEEEEEECccccc
Confidence 6665544432 5678899999999853
No 283
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.34 E-value=1.8e-12 Score=112.82 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=85.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCC-CCCCCCcc-cceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVF-DNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+||+++|++|||||||+.+|..+.|. ..+.+|++ +.+.+++.+++..+.+.+||+++..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------------------- 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------------------- 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-------------------
Confidence 69999999999999999999999997 78888887 6668889999999999999988722
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCC-CCceEEEEeccccchhhhcccccccCC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYP-QTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
. |. ...+++ ++|++++|||.... .+ ...+..
T Consensus 62 -----~----------------------------~~----------~~~~~~~~ad~iilV~d~td~--~S---~~~~~~ 93 (221)
T cd04148 62 -----M----------------------------WT----------EDSCMQYQGDAFVVVYSVTDR--SS---FERASE 93 (221)
T ss_pred -----h----------------------------HH----------HhHHhhcCCCEEEEEEECCCH--HH---HHHHHH
Confidence 0 00 012345 89999999974432 12 223344
Q ss_pred cceeeecc-CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .....|+.++|||.|+..
T Consensus 94 ~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 94 LRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred HHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 55544332 235788999999999854
No 284
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.34 E-value=2.5e-12 Score=124.16 Aligned_cols=165 Identities=22% Similarity=0.235 Sum_probs=111.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|...+++++|++|||||||.|++++.+...-+.|-+ -+.-.-.+...++. +++.|.||. .++.+..
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~---YSL~~~S-------- 67 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGT---YSLTAYS-------- 67 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCc---CCCCCCC--------
Confidence 346779999999999999999999987533333333 22222244444444 788999998 2222110
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc-cCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY-PQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~-~~~d~~i 218 (330)
+...-.+...+ .+.|+++
T Consensus 68 -------------------------------------------------------------~DE~Var~~ll~~~~D~iv 86 (653)
T COG0370 68 -------------------------------------------------------------EDEKVARDFLLEGKPDLIV 86 (653)
T ss_pred -------------------------------------------------------------chHHHHHHHHhcCCCCEEE
Confidence 11111112222 3569999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
-|.|.+|.+---.+.- ++.+ -+.|++++.|++|.... +.+. -+..++.+..| +|++++||
T Consensus 87 nVvDAtnLeRnLyltl----QLlE--~g~p~ilaLNm~D~A~~------------~Gi~-ID~~~L~~~LG-vPVv~tvA 146 (653)
T COG0370 87 NVVDATNLERNLYLTL----QLLE--LGIPMILALNMIDEAKK------------RGIR-IDIEKLSKLLG-VPVVPTVA 146 (653)
T ss_pred EEcccchHHHHHHHHH----HHHH--cCCCeEEEeccHhhHHh------------cCCc-ccHHHHHHHhC-CCEEEEEe
Confidence 9999998776555441 1222 27899999999999763 3333 34567888898 89999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+.|.|++++.+++.+....+.
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999887665444
No 285
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.33 E-value=3.8e-12 Score=105.75 Aligned_cols=118 Identities=52% Similarity=0.824 Sum_probs=88.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.++..+.+...+.+|+.+.+......++..+.+++||+++....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~------------------- 61 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY------------------- 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc-------------------
Confidence 6999999999999999999999999999999998888888888999999999988762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++.+|+++++||.... .+ .......|+.
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~~--~s--~~~~~~~~~~ 96 (171)
T cd00157 62 -----------------------------------------DRLRPLSYPNTDVFLICFSVDSP--SS--FENVKTKWIP 96 (171)
T ss_pred -----------------------------------------cccchhhcCCCCEEEEEEECCCH--HH--HHHHHHHHHH
Confidence 12344567899999999984421 11 1122233444
Q ss_pred eeeccCCCcccccccceeeccCC
Q psy9997 164 FISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.... ..+..|+.++|+|.|+..
T Consensus 97 ~~~~-~~~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 97 EIRH-YCPNVPIILVGTKIDLRD 118 (171)
T ss_pred HHHh-hCCCCCEEEEEccHHhhh
Confidence 3333 234788999999999853
No 286
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.32 E-value=6.9e-13 Score=110.48 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=81.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++..+. .+.. ..+.+++||+++..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~----------------- 66 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKI----------------- 66 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHH-----------------
Confidence 6899999999999999999999998885 47888875553 3333 4678999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.+++.||+++|++++|||.+... + ..+...|
T Consensus 67 -------------------------------------------~~~~~~~~~~a~~ii~v~D~t~~~--s---~~~~~~~ 98 (168)
T cd04149 67 -------------------------------------------RPLWRHYYTGTQGLIFVVDSADRD--R---IDEARQE 98 (168)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEeCCchh--h---HHHHHHH
Confidence 334567899999999999955421 1 1223344
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+..... ...+..|+.++|||.|+.
T Consensus 99 ~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 99 LHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred HHHHhcCHhhcCCcEEEEEECcCCc
Confidence 433332 223567899999999984
No 287
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.32 E-value=2.2e-12 Score=110.32 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=88.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|+.+.|...+.+|+.+.+...+.+.+..+.+++||+++...+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------------------- 60 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------------------- 60 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhh--------------------
Confidence 799999999999999999999999999999998777778888998899999988762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..+++++|++++|||.+. ......+..|+..
T Consensus 61 ----------------------------------------~~~~~~~~~~ad~vilv~d~~~-----~~s~~~~~~~~~~ 95 (198)
T cd04147 61 ----------------------------------------PAMRKLSIQNSDAFALVYAVDD-----PESFEEVERLREE 95 (198)
T ss_pred ----------------------------------------hHHHHHHhhcCCEEEEEEECCC-----HHHHHHHHHHHHH
Confidence 2235568899999999998443 1122234445444
Q ss_pred eecc-CCCcccccccceeeccCC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+... .....|+.+++||.|+..
T Consensus 96 i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 96 ILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHhcCCCCCcEEEEEEcccccc
Confidence 4332 235688999999999853
No 288
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.31 E-value=8.9e-13 Score=111.21 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=81.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++.++. .+.. ..+.+++||+++..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~----------------- 74 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKI----------------- 74 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHH-----------------
Confidence 5789999999999999999999998886 57899875553 3333 4578899988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..||+++|++|+|||.+... .+ .+...|
T Consensus 75 -------------------------------------------~~~~~~~~~~a~~iI~V~D~s~~~--s~---~~~~~~ 106 (181)
T PLN00223 75 -------------------------------------------RPLWRHYFQNTQGLIFVVDSNDRD--RV---VEARDE 106 (181)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEeCCcHH--HH---HHHHHH
Confidence 446778999999999999955321 11 122223
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..... ...+..|+.++|||.|++.
T Consensus 107 l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 107 LHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred HHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 332222 2335788999999999853
No 289
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.31 E-value=2.9e-12 Score=107.42 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=80.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||+.||..+.|. .+.||++..+. .+.. ..+.+.+||+++..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~----------------- 70 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKI----------------- 70 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhh-----------------
Confidence 5799999999999999999999988885 57889875553 2333 3577899988872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..||++++++++|||.+... . ......|
T Consensus 71 -------------------------------------------~~~~~~~~~~ad~ii~v~D~t~~~--s---~~~~~~~ 102 (175)
T smart00177 71 -------------------------------------------RPLWRHYYTNTQGLIFVVDSNDRD--R---IDEAREE 102 (175)
T ss_pred -------------------------------------------HHHHHHHhCCCCEEEEEEECCCHH--H---HHHHHHH
Confidence 345677899999999999855321 1 1122233
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..... ...+..|+.++|||.|+..
T Consensus 103 l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 103 LHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 333222 2235678999999999853
No 290
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=3.6e-12 Score=108.59 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=63.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+.||+|...|.......+..+|++++|.|.+..-.-... ..+..+.. .++| +|+|.||+|+......
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~~~iIvviNK~D~~~~~~~------ 136 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTR--EHLLLARQ--VGVPYIVVFLNKADMVDDEEL------ 136 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCcEEEEEeCCCCCCcHHH------
Confidence 35667777777765556667789999999999764222211 22333333 2566 8899999999643110
Q ss_pred CCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCH
Q psy9997 271 NKQKPISFEQGEKLAKELK----AVKYVECSALTQKGL 304 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v 304 (330)
.....+++.++..+.+ .++++.+||.+|.|.
T Consensus 137 ---~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 137 ---LELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ---HHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 1112345666666554 268999999999985
No 291
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.30 E-value=3.7e-12 Score=104.61 Aligned_cols=118 Identities=24% Similarity=0.360 Sum_probs=87.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.+++.+.+...+.+|....+ ...+.+.+..+.+.+||+++...+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------------ 62 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY------------------ 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH------------------
Confidence 6999999999999999999999999888888886555 567778888889999987761111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+++.+++++|+++++||..... ....+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~-----s~~~~~~~~ 95 (162)
T cd04123 63 ------------------------------------------HALGPIYYRDADGAILVYDITDAD-----SFQKVKKWI 95 (162)
T ss_pred ------------------------------------------HHhhHHHhccCCEEEEEEECCCHH-----HHHHHHHHH
Confidence 234556788999999999843221 223344565
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+........|+..+++|.|+..
T Consensus 96 ~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 96 KELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 555444444778899999999853
No 292
>PRK12735 elongation factor Tu; Reviewed
Probab=99.29 E-value=6.6e-12 Score=118.56 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=70.9
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEE-EEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.++||+|++.|.......+..+|++++|+|+.+...-+.. .++..+.. .++|.+ +|.||+|+......
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~--e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~------ 146 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKCDMVDDEEL------ 146 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEEEecCCcchHHH------
Confidence 35677888787765555667789999999999864322211 12223322 357755 68999999642110
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCC----------CHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQK----------GLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~----------~v~~~f~~l~~~i 315 (330)
.+...+++..+.+.++. .+++++||.+|. ++.++++.+...+
T Consensus 147 ---~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 147 ---LELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred ---HHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11223456667666542 679999999984 5777777776654
No 293
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.29 E-value=6.7e-12 Score=118.56 Aligned_cols=95 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEE-EEEeccCCCCCchhhHH
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFL-LVGTQIDLREDAPTLEK 267 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~pii-lV~nK~Dl~~~~~~~~~ 267 (330)
+.+||++|++.|..........+|++++|+|++. +++.+.+. .+.. .++|.+ +|.||+|+......
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~-----~~~~--~gi~~iIvvvNK~Dl~~~~~~--- 146 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHIL-----LARQ--VGVPYIVVFLNKCDMVDDEEL--- 146 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-----HHHH--cCCCEEEEEEEecccCCHHHH---
Confidence 3467777777775544445668899999999987 33333332 2222 256654 78999999753110
Q ss_pred hhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCC
Q psy9997 268 LAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQK 302 (330)
Q Consensus 268 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~ 302 (330)
.+...+++.++.+.++. ++++++||.+|.
T Consensus 147 ------~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 147 ------LELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred ------HHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 01123456677776653 689999999885
No 294
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.29 E-value=7.7e-12 Score=106.01 Aligned_cols=116 Identities=34% Similarity=0.578 Sum_probs=87.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
.||+++|++|||||||+.++..+.|..++.+|+.+.+...+.+++..+.+.+||+++....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------------------- 62 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY------------------- 62 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhc-------------------
Confidence 6999999999999999999999999999999998888878888999999999988762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-Ccc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG-GWF 162 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-~~~ 162 (330)
....+.+++++++++++|+... .. ....+. .|.
T Consensus 63 -----------------------------------------~~~~~~~~~~a~~~llv~~i~~--~~---s~~~~~~~~~ 96 (187)
T cd04129 63 -----------------------------------------ERLRPLSYSKAHVILIGFAVDT--PD---SLENVRTKWI 96 (187)
T ss_pred -----------------------------------------cccchhhcCCCCEEEEEEECCC--HH---HHHHHHHHHH
Confidence 1123346789999999997422 11 222332 455
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+..+ .+..|+.++|+|.|+.
T Consensus 97 ~~i~~~-~~~~piilvgnK~Dl~ 118 (187)
T cd04129 97 EEVRRY-CPNVPVILVGLKKDLR 118 (187)
T ss_pred HHHHHh-CCCCCEEEEeeChhhh
Confidence 555433 3468999999999984
No 295
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.28 E-value=4.5e-12 Score=105.39 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=85.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||++++.++.|...+.+|++..+ .+.+.+.+..+.+++||+++...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------------------- 61 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQER------------------- 61 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHH-------------------
Confidence 6999999999999999999999999999999987554 66788899999999998876111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+ ..++..+++++|+++++||.... .. ..+...|.
T Consensus 62 -----~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~~---~~~~~~~~ 95 (172)
T cd01862 62 -----F------------------------------------QSLGVAFYRGADCCVLVYDVTNP--KS---FESLDSWR 95 (172)
T ss_pred -----H------------------------------------HhHHHHHhcCCCEEEEEEECCCH--HH---HHHHHHHH
Confidence 0 22345678999999999974321 11 12233344
Q ss_pred eeeec----cCCCcccccccceeeccC
Q psy9997 163 WFIST----EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~----~~~~~~~~~~~g~~~~~~ 185 (330)
..... ......|+.++++|.|+.
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECcccc
Confidence 33222 123367888999999985
No 296
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.28 E-value=1.6e-12 Score=107.22 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=78.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.|+..+.|. .+.||++.++. .+.. ..+.+.+||+++..++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~------------------- 57 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKI------------------- 57 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhH-------------------
Confidence 59999999999999999999999997 58899875553 3333 4677899988872111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+.++..||+++|++++|||.+... + ......|+.
T Consensus 58 -----------------------------------------~~~~~~~~~~ad~~i~v~D~~~~~--s---~~~~~~~~~ 91 (159)
T cd04150 58 -----------------------------------------RPLWRHYFQNTQGLIFVVDSNDRE--R---IGEAREELQ 91 (159)
T ss_pred -----------------------------------------HHHHHHHhcCCCEEEEEEeCCCHH--H---HHHHHHHHH
Confidence 334567899999999999865421 1 112223333
Q ss_pred eeec-cCCCcccccccceeeccC
Q psy9997 164 FIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
.+.. ......|+.++|||.|+.
T Consensus 92 ~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 92 RMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred HHHhcHHhcCCCEEEEEECCCCC
Confidence 2221 222457889999999985
No 297
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.2e-11 Score=113.53 Aligned_cols=108 Identities=22% Similarity=0.377 Sum_probs=75.4
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
.+.||||++.|..++.....-+|+++||.++++ |++.+.+. .....++|+++..||+|.....+......
T Consensus 58 tFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~-------hak~a~vP~iVAiNKiDk~~~np~~v~~e 130 (509)
T COG0532 58 TFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN-------HAKAAGVPIVVAINKIDKPEANPDKVKQE 130 (509)
T ss_pred EEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH-------HHHHCCCCEEEEEecccCCCCCHHHHHHH
Confidence 345666668899999999999999999999986 67777765 11225899999999999986543222111
Q ss_pred hCCCCCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 270 KNKQKPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
... ..+ .++.+ +...++++||++|+|+++++..++...
T Consensus 131 l~~-~gl-------~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 131 LQE-YGL-------VPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred HHH-cCC-------CHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 000 011 11122 236799999999999999999876544
No 298
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.27 E-value=1.2e-11 Score=112.66 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=49.5
Q ss_pred EEEeecCCCceeEEEEeeccCCCC------CCCCCceeecceEE----------------EEECC-ceeeeeeeecCCC-
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFP------SEYVPTVFDNYAVT----------------VMIGG-EPYTLGLFDTAGQ- 121 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~------~~~~~t~~~~~~~~----------------~~~~~-~~~~l~i~Dt~g~- 121 (330)
|.++|.+|||||||++++++..+. ..+.|++|..+... ...++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 578999999999999999988742 23345554443211 00223 3467889999987
Q ss_pred ---ccccccCCCC---CCCCceEEEEec
Q psy9997 122 ---EDYDRLRPLS---YPQTDVFLVCFG 143 (330)
Q Consensus 122 ---~~~~~l~~~~---~~~~~~~i~v~~ 143 (330)
+.+..+...| +|+||+++.|+|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd 108 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVD 108 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEe
Confidence 3334444443 667777777665
No 299
>PRK12736 elongation factor Tu; Reviewed
Probab=99.26 E-value=1.4e-11 Score=116.29 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=71.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.++|++|++.|.......+..+|++++|+|++....-... .++..+.. .++| +|+|.||+|+......
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~--~g~~~~IvviNK~D~~~~~~~------ 146 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQ--VGVPYLVVFLNKVDLVDDEEL------ 146 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHH--cCCCEEEEEEEecCCcchHHH------
Confidence 45778888888765555566789999999999863221111 12222332 2677 6889999999643110
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCC--------CHHHHHHHHHHHhc
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQK--------GLKNVFDEAILAAL 316 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~--------~v~~~f~~l~~~i~ 316 (330)
.....++...+....+. .+++.+||.+|. +++++++.+...+-
T Consensus 147 ---~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 147 ---LELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred ---HHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 01122455666655542 579999999983 57788887776654
No 300
>PLN03118 Rab family protein; Provisional
Probab=99.26 E-value=8.9e-12 Score=107.70 Aligned_cols=118 Identities=16% Similarity=0.297 Sum_probs=83.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|+.+.+ ..+.+|++..+ ...+.+++..+.+.+||+++..++
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------------- 75 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF----------------- 75 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 68999999999999999999999988 46788887655 567788899999999998872221
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC-
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG- 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~- 160 (330)
..++..|++++|++++|||.... .++. .+..
T Consensus 76 -------------------------------------------~~~~~~~~~~~d~~vlv~D~~~~--~sf~---~~~~~ 107 (211)
T PLN03118 76 -------------------------------------------RTLTSSYYRNAQGIILVYDVTRR--ETFT---NLSDV 107 (211)
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH--HHHH---HHHHH
Confidence 33456689999999999985431 1111 2211
Q ss_pred cceeeecc-CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
|...+... .....++.++|+|.|+..
T Consensus 108 ~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 108 WGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 32222221 223457788999999853
No 301
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.26 E-value=1.1e-11 Score=101.94 Aligned_cols=117 Identities=19% Similarity=0.348 Sum_probs=86.4
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+||+++..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-------------------- 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE-------------------- 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch--------------------
Confidence 6999999999999999999999999888999998666 4567788888999999887621
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
++ ..+...+++++|+++++||.+. ..++ .....|+
T Consensus 61 ----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~--~~s~---~~~~~~~ 95 (161)
T cd01863 61 ----RF------------------------------------RTLTSSYYRGAQGVILVYDVTR--RDTF---TNLETWL 95 (161)
T ss_pred ----hh------------------------------------hhhhHHHhCCCCEEEEEEECCC--HHHH---HhHHHHH
Confidence 11 2233456889999999998432 1111 2333465
Q ss_pred eeeecc-CCCcccccccceeeccC
Q psy9997 163 WFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..+..+ ..+..++.++|+|.|+.
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCccc
Confidence 555443 34667789999999984
No 302
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.25 E-value=4.2e-12 Score=110.37 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=62.4
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhh---Hh---hhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
.+.+||++|+..|.......+..+|++++|.|+++... |. .....+ . +.......|+++|+||+|+......
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-L-LARTLGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-H-HHHHcCCCeEEEEEEcccccccccc
Confidence 35567777776665544455678999999999988521 11 111011 1 1122234789999999999742100
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLK 305 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~ 305 (330)
... .....+++..+....+. ++++++||++|.|++
T Consensus 156 ~~~------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EER------YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHH------HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 000 00112233334444432 679999999999987
No 303
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.25 E-value=1e-11 Score=103.11 Aligned_cols=116 Identities=13% Similarity=0.223 Sum_probs=80.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.||..+.|+..+.++ ...+.....+.+..+.+++||+++....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------------- 60 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQD------------------- 60 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhh-------------------
Confidence 59999999999999999999999998775554 4455555667788899999988862111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCcc
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGWF 162 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~~ 162 (330)
......+++.+|++++||+... .. ....+ ..|+
T Consensus 61 -----------------------------------------~~~~~~~~~~ad~~ilv~d~~~--~~---s~~~~~~~~~ 94 (166)
T cd01893 61 -----------------------------------------RANLAAEIRKANVICLVYSVDR--PS---TLERIRTKWL 94 (166)
T ss_pred -----------------------------------------hHHHhhhcccCCEEEEEEECCC--HH---HHHHHHHHHH
Confidence 1112335688999999997332 11 12222 2355
Q ss_pred eeeeccCCCcccccccceeeccCC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+... .+..|+.++|||.|+..
T Consensus 95 ~~i~~~-~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 95 PLIRRL-GVKVPIILVGNKSDLRD 117 (166)
T ss_pred HHHHHh-CCCCCEEEEEEchhccc
Confidence 444332 34788999999999853
No 304
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.25 E-value=1.2e-11 Score=102.56 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=87.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc-ceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+.+.+.+|++. .....+.+++..+.+.+||+++...+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------------- 69 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF----------------- 69 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 489999999999999999999999999888899874 44667888999999999987761111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
...+..+++.+|+++++||.... .+ ...+..|
T Consensus 70 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 101 (169)
T cd04114 70 -------------------------------------------RSITQSYYRSANALILTYDITCE--ES---FRCLPEW 101 (169)
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEECcCH--HH---HHHHHHH
Confidence 22334578899999999985421 11 2233445
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+........+..++|||.|+..
T Consensus 102 ~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 102 LREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 5544444445677889999999853
No 305
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.24 E-value=1.1e-11 Score=102.05 Aligned_cols=117 Identities=23% Similarity=0.308 Sum_probs=87.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+++++.|.+.+.+++.+.+.+...+++..+.+.+||+++....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------------- 61 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY------------------- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-------------------
Confidence 6999999999999999999999999999999999888888889999999999988762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++++++++++|+... ..+ ......|..
T Consensus 62 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~--~~s---~~~~~~~~~ 95 (164)
T cd04139 62 -----------------------------------------AAIRDNYHRSGEGFLLVFSITD--MES---FTATAEFRE 95 (164)
T ss_pred -----------------------------------------hHHHHHHhhcCCEEEEEEECCC--HHH---HHHHHHHHH
Confidence 2235567889999999997332 111 122233333
Q ss_pred eeecc-CCCcccccccceeeccC
Q psy9997 164 FISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
..... .....|+..++||.|+.
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred HHHHhcCCCCCCEEEEEEccccc
Confidence 33222 23568889999999985
No 306
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.24 E-value=6.4e-11 Score=102.76 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=44.3
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+|||+|++.|......+++.+|++++|+|+++..+.+... .+..... .++|+++|+||+|+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~--~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET--VLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEECCCcc
Confidence 34444444666666777788999999999999876655533 2222222 368999999999986
No 307
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.23 E-value=4.4e-12 Score=107.08 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=78.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
++||+++|++|||||||+.++..+.|.. +.||++..+. .+.. ..+.+.+||+++..++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~------------------ 74 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKL------------------ 74 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhH------------------
Confidence 6899999999999999999999999965 7889875553 3333 4578899988862111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..||+++|++|+|||.+.. .++ .+...++
T Consensus 75 ------------------------------------------~~~~~~~~~~ad~iI~v~D~t~~--~s~---~~~~~~l 107 (182)
T PTZ00133 75 ------------------------------------------RPLWRHYYQNTNGLIFVVDSNDR--ERI---GDAREEL 107 (182)
T ss_pred ------------------------------------------HHHHHHHhcCCCEEEEEEeCCCH--HHH---HHHHHHH
Confidence 34567789999999999985432 111 1122232
Q ss_pred eeee-ccCCCcccccccceeeccC
Q psy9997 163 WFIS-TEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~-~~~~~~~~~~~~g~~~~~~ 185 (330)
.... .......|+.++|||.|+.
T Consensus 108 ~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 108 ERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred HHHHhCHhhcCCCEEEEEeCCCCC
Confidence 2221 1223456889999999985
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.22 E-value=2e-11 Score=105.94 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=101.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
||+++|+.++||||+.+-...+.- +......+..... ...+ ....+.+++||.||+..+-.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~---------------- 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME---------------- 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH----------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccc----------------
Confidence 799999999999998766655432 1111112222211 1112 24566889999999832211
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
..+...+...++++.++|.|+|
T Consensus 64 ----------------------------------------------------------~~~~~~~~~if~~v~~LIyV~D 85 (232)
T PF04670_consen 64 ----------------------------------------------------------NYFNSQREEIFSNVGVLIYVFD 85 (232)
T ss_dssp ----------------------------------------------------------TTHTCCHHHHHCTESEEEEEEE
T ss_pred ----------------------------------------------------------ccccccHHHHHhccCEEEEEEE
Confidence 1123445567889999999999
Q ss_pred cCChhhHhhhh--hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC--CeeEEEEee
Q psy9997 223 VVSPSSFENVK--EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK--AVKYVECSA 298 (330)
Q Consensus 223 ~~~~~s~~~~~--~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa 298 (330)
+.+.+-.+++. ...+..+.+..+++.+-+..+|.|+..+....+.. ....+.....+...+ .+.++.+|-
T Consensus 86 ~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~------~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 86 AQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIF------RDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp TT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHH------HHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHH------HHHHHHHHHHhhhccccceEEEeccC
Confidence 98555444443 03345566667999999999999997653322211 111222333333332 256777776
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
-+ +.+.++|..+++.++.+.+..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHH
Confidence 65 799999999999999664443
No 309
>COG2262 HflX GTPases [General function prediction only]
Probab=99.20 E-value=6.1e-11 Score=108.34 Aligned_cols=164 Identities=21% Similarity=0.175 Sum_probs=105.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
-..|.++|..|+|||||.|++++.... .+...+.=+.....+.+.+ ...+.+-||.|-
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGF-------------------- 250 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGF-------------------- 250 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccC--------------------
Confidence 357899999999999999999976532 2222222233344455543 233445577775
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
-++++.|+- +.|++.- .-...||.++.|.
T Consensus 251 -------------I~~LP~~LV-------------------------------------~AFksTL-EE~~~aDlllhVV 279 (411)
T COG2262 251 -------------IRDLPHPLV-------------------------------------EAFKSTL-EEVKEADLLLHVV 279 (411)
T ss_pred -------------cccCChHHH-------------------------------------HHHHHHH-HHhhcCCEEEEEe
Confidence 011222210 3333321 1345799999999
Q ss_pred EcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
|.++|...+.+. .-...+.+. ..++|+|+|.||+|+..+. . ......... ...+.+||++
T Consensus 280 DaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~~------------~-----~~~~~~~~~-~~~v~iSA~~ 340 (411)
T COG2262 280 DASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLEDE------------E-----ILAELERGS-PNPVFISAKT 340 (411)
T ss_pred ecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCch------------h-----hhhhhhhcC-CCeEEEEecc
Confidence 999997777766 555555554 3579999999999987641 1 112222221 1489999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++.+++.|...+-.
T Consensus 341 ~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 341 GEGLDLLRERIIELLSG 357 (411)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999887763
No 310
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.20 E-value=1.3e-11 Score=104.20 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=81.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEE-CCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|.+||+++|++|||||||+.++..+.|... .||++... ...+.. ++..+.+++||+++..++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------------- 65 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL--------------- 65 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhH---------------
Confidence 689999999999999999999999998765 67776333 334444 446788999988862111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+.+++.+++++|++++|||.+.. .+ .....
T Consensus 66 ---------------------------------------------~~~~~~~~~~~d~ii~v~D~~~~--~~---~~~~~ 95 (183)
T cd04152 66 ---------------------------------------------RPLWKSYTRCTDGIVFVVDSVDV--ER---MEEAK 95 (183)
T ss_pred ---------------------------------------------HHHHHHHhccCCEEEEEEECCCH--HH---HHHHH
Confidence 33456789999999999985431 11 11222
Q ss_pred Ccceeeec-cCCCcccccccceeeccC
Q psy9997 160 GWFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.. ......|+.+++||.|+.
T Consensus 96 ~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 96 TELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred HHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 33332222 123457889999999984
No 311
>PRK13351 elongation factor G; Reviewed
Probab=99.20 E-value=2.8e-11 Score=122.13 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
.+.+|||+|+..|......+++.+|++++|+|.++........ .| ..+.. .++|+++|+||+|+...
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~-~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VW-RQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHh--cCCCEEEEEECCCCCCC
Confidence 3455666666777666777888999999999999877666554 34 33333 37899999999999864
No 312
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.19 E-value=4.8e-11 Score=106.98 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=45.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+||++|...+.......++.+|++++|+|.++........ .| ..+.. .+.|.++|+||+|+...
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~-~~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEK-LW-EFADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HH-HHHHH--cCCCEEEEEECCccCCC
Confidence 455677776766655666778899999999998765554333 23 23332 36899999999998764
No 313
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.19 E-value=5.7e-12 Score=109.26 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=114.4
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.++++++|.+|+|||||+|+++++...+-..-..+.............-.+.+||+||.+.-..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~------------- 102 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD------------- 102 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchh-------------
Confidence 4567899999999999999999999765433221112222222111112225678889888732000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
.| ..+++....++...|.+++
T Consensus 103 ------------------------------------------~D-----------------~~~r~~~~d~l~~~DLvL~ 123 (296)
T COG3596 103 ------------------------------------------KD-----------------AEHRQLYRDYLPKLDLVLW 123 (296)
T ss_pred ------------------------------------------hh-----------------HHHHHHHHHHhhhccEEEE
Confidence 00 2255555667778898888
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh---hCCCCCcCHHHHHHHHHHhC-CeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA---KNKQKPISFEQGEKLAKELK-AVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~-~~~~~e 295 (330)
..+..|+.---+. .+++++....-+.|++++.|.+|.......+.... +..+++...+.+....+... -.|++.
T Consensus 124 l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~ 201 (296)
T COG3596 124 LIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVA 201 (296)
T ss_pred eccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 8888877654444 46666666666799999999999987643333111 11122233333333333221 247888
Q ss_pred EeeccCCCHHHHHHHHHHHhc
Q psy9997 296 CSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+|...++|++++..+++..+=
T Consensus 202 ~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 202 VSGRLPWGLKELVRALITALP 222 (296)
T ss_pred eccccCccHHHHHHHHHHhCc
Confidence 889999999999999998874
No 314
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.18 E-value=2.2e-11 Score=101.23 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=78.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
+|+++|++|||||||+.++..+ |...+.||++.. ...+..+ .+.+++||+++..++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~-------------------- 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANF-------------------- 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHH--------------------
Confidence 5899999999999999999876 888999999754 3344443 577888987762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.++..||++++++++|||.+... ....+..|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~a~~ii~V~D~s~~~-----s~~~~~~~l~~ 91 (167)
T cd04161 57 ----------------------------------------RGIWVNYYAEAHGLVFVVDSSDDD-----RVQEVKEILRE 91 (167)
T ss_pred ----------------------------------------HHHHHHHHcCCCEEEEEEECCchh-----HHHHHHHHHHH
Confidence 334567899999999999855421 12223334443
Q ss_pred eecc-CCCcccccccceeeccCC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+ .....|+.+++||.|+..
T Consensus 92 l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 92 LLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred HHcCccccCCcEEEEEeCCCCcC
Confidence 3332 224678999999999854
No 315
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.17 E-value=1.8e-10 Score=110.12 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=64.3
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-----CCC-cEEEEEeccCCCCCchhhHH
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKT-PFLLVGTQIDLREDAPTLEK 267 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~-piilV~nK~Dl~~~~~~~~~ 267 (330)
+.|++|++.|.......+..+|++++|+|+++ ..|+... .|..+.+++. .++ ++|+|.||+|+....-....
T Consensus 89 liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~-~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~ 166 (447)
T PLN00043 89 VIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGI-SKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166 (447)
T ss_pred EEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cceeccc-CCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHH
Confidence 34444447776666677888999999999886 3344222 2322222221 356 57889999998621100000
Q ss_pred hhhCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHH
Q psy9997 268 LAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKN 306 (330)
Q Consensus 268 ~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 306 (330)
-....++++.++++.+ .++|+++||.+|+|+.+
T Consensus 167 ------~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 167 ------YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ------HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 0112456777777765 36799999999999853
No 316
>KOG1489|consensus
Probab=99.16 E-value=1e-10 Score=103.12 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=66.6
Q ss_pred ccCCCEEEEEEEcCCh---hhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSP---SSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.|+..++|.|++.. ..++.++ .+..++..+. .+.|.++|+||+|+.+.. .+-..++
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKiD~~eae---------------~~~l~~L 335 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKIDLPEAE---------------KNLLSSL 335 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEeccCchhHH---------------HHHHHHH
Confidence 5578999999999988 8888887 5666666654 578999999999996431 1113556
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
++......++++||+.++|++++.+.+-+
T Consensus 336 ~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 336 AKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 66666444999999999999999987643
No 317
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.16 E-value=2.1e-11 Score=101.57 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=77.9
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.|+..+.|.. +.||++..+. .+.. ..+.+.+||+++..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~-------------------- 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKL-------------------- 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhc--------------------
Confidence 79999999999999999999998864 8889875553 2333 4567888988762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.++..+++++|++++|||.+.. . .......|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~ad~ii~V~D~s~~--~---s~~~~~~~~~~ 91 (169)
T cd04158 57 ----------------------------------------RPLWKHYYLNTQAVVFVVDSSHR--D---RVSEAHSELAK 91 (169)
T ss_pred ----------------------------------------chHHHHHhccCCEEEEEEeCCcH--H---HHHHHHHHHHH
Confidence 23456688999999999985432 1 11233445544
Q ss_pred eecc-CCCcccccccceeeccC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+... .....|+.++|||.|+.
T Consensus 92 ~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 92 LLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred HhcChhhCCCCEEEEEeCcCcc
Confidence 4332 23457889999999984
No 318
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.16 E-value=2.5e-11 Score=94.81 Aligned_cols=116 Identities=19% Similarity=0.247 Sum_probs=74.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
||+++|++|||||||+++|+.+.+. ..+.++-...+ .....+......+.+|+.++....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------------- 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF----------------- 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH-----------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee-----------------
Confidence 8999999999999999999999987 12233334344 346677777777899976652111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
......++.++|++++|||.+. ..++....++..|
T Consensus 64 -------------------------------------------~~~~~~~~~~~d~~ilv~D~s~--~~s~~~~~~~~~~ 98 (119)
T PF08477_consen 64 -------------------------------------------YSQHQFFLKKADAVILVYDLSD--PESLEYLSQLLKW 98 (119)
T ss_dssp -------------------------------------------HCTSHHHHHHSCEEEEEEECCG--HHHHHHHHHHHHH
T ss_pred -------------------------------------------cccccchhhcCcEEEEEEcCCC--hHHHHHHHHHHHH
Confidence 1112223778999999998442 3344444455666
Q ss_pred ceeeeccCCCcccccccceeec
Q psy9997 162 FWFISTEHSPPMKLHTLGFITN 183 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~ 183 (330)
+..+... .+..|+.++|||.|
T Consensus 99 l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 99 LKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHHH-SSCSEEEEEEE-TC
T ss_pred HHHHHcc-CCCCCEEEEEeccC
Confidence 6666553 34488999999875
No 319
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.15 E-value=6.1e-11 Score=98.86 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=100.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
....|+++|.+|||||||+|.+++.+--.....|-|-.. ...+.+++. +.+.|.||.. |....
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYG-yAkv~------------ 86 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYG-YAKVP------------ 86 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcc-cccCC------------
Confidence 456899999999999999999999764333344444333 335555554 6788999971 11110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC---CCEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---TDVF 217 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---~d~~ 217 (330)
.... +.+......|++. -.++
T Consensus 87 -------k~~~-------------------------------------------------e~w~~~i~~YL~~R~~L~~v 110 (200)
T COG0218 87 -------KEVK-------------------------------------------------EKWKKLIEEYLEKRANLKGV 110 (200)
T ss_pred -------HHHH-------------------------------------------------HHHHHHHHHHHhhchhheEE
Confidence 0111 2233333333332 3477
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-HHHHHhCCee--EE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-KLAKELKAVK--YV 294 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~--~~ 294 (330)
+++.|+-.+-.-.+. +.++-+.+ .++|+++|+||+|...... +.-...... .+..... .. ++
T Consensus 111 vlliD~r~~~~~~D~--em~~~l~~--~~i~~~vv~tK~DKi~~~~----------~~k~l~~v~~~l~~~~~-~~~~~~ 175 (200)
T COG0218 111 VLLIDARHPPKDLDR--EMIEFLLE--LGIPVIVVLTKADKLKKSE----------RNKQLNKVAEELKKPPP-DDQWVV 175 (200)
T ss_pred EEEEECCCCCcHHHH--HHHHHHHH--cCCCeEEEEEccccCChhH----------HHHHHHHHHHHhcCCCC-ccceEE
Confidence 788887654444333 23333333 3899999999999987421 000011111 2211111 22 77
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
..|+..+.|++++...+...+.+
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEecccccCHHHHHHHHHHHhhc
Confidence 88999999999999988877644
No 320
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.15 E-value=4.1e-11 Score=97.58 Aligned_cols=117 Identities=20% Similarity=0.332 Sum_probs=89.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
+||+++|++|||||||+.++..+.+...+.+|.+..+ ...+..++..+.+.+||+++....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------------ 62 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF------------------ 62 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHH------------------
Confidence 6899999999999999999999999999899987555 567788888899999988762110
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
..+...+++++|++++++|... ......+..|+
T Consensus 63 ------------------------------------------~~~~~~~~~~~d~ii~v~d~~~-----~~~~~~~~~~~ 95 (159)
T cd00154 63 ------------------------------------------RSITPSYYRGAHGAILVYDITN-----RESFENLDKWL 95 (159)
T ss_pred ------------------------------------------HHHHHHHhcCCCEEEEEEECCC-----HHHHHHHHHHH
Confidence 2234557888999999998443 22233455577
Q ss_pred eeeeccCCCcccccccceeeccC
Q psy9997 163 WFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.....+..|+..+++|.|+.
T Consensus 96 ~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 96 KELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHhCCCCCcEEEEEEccccc
Confidence 76666655778889999999983
No 321
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.15 E-value=9.4e-11 Score=104.74 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=45.4
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
.+.+|||+|++.|.......++.+|++++|+|.++....... .++..... .++|+++++||+|+...
T Consensus 72 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~--~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 72 VINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTR--KLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHH--HHHHHHHh--cCCCEEEEEECCccCCC
Confidence 345666666677665555567889999999999875432221 23333322 37899999999998654
No 322
>KOG0705|consensus
Probab=99.14 E-value=1.3e-10 Score=108.63 Aligned_cols=165 Identities=23% Similarity=0.363 Sum_probs=132.2
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.+...++|+-|+|+.++|||+|++||+...|.... .+.+..|.+.+.+++....+-+.|.+|..
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~--------------- 88 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHP--------------- 88 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCc---------------
Confidence 45567899999999999999999999999886654 44577888999999999999888877741
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
...|...+|++
T Consensus 89 ---------------------------------------------------------------------~aQft~wvdav 99 (749)
T KOG0705|consen 89 ---------------------------------------------------------------------DAQFCQWVDAV 99 (749)
T ss_pred ---------------------------------------------------------------------hhhhhhhccce
Confidence 12234457999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
|+||.+.+..+|+.+. .+...+... ...+|+++||++.-.... ..+.+...+++.++.++..+.|++
T Consensus 100 Ifvf~~~d~~s~q~v~-~l~~~l~~~r~r~~i~l~lvgtqd~iS~~----------~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQ-ALAHEMSSYRNISDLPLILVGTQDHISAK----------RPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred EEEEEeccccCHHHHH-HHHhhcccccccccchHHhhcCcchhhcc----------cccccchHHHHHHHHhcCccceee
Confidence 9999999999999998 555444433 368999999998544332 237778888888888888789999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.+|.+++..|..+..+++..
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998888754
No 323
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.14 E-value=3.7e-11 Score=98.41 Aligned_cols=116 Identities=26% Similarity=0.419 Sum_probs=85.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+++.+.+...+.++..+.+.....+++..+.+++||.++...+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------------------- 60 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-------------------- 60 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------------------
Confidence 799999999999999999999999999999998777778888888899999987762110
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..+...+++++++++++|+... ..+...+..|...
T Consensus 61 ----------------------------------------~~~~~~~~~~~~~~i~v~d~~~-----~~s~~~~~~~~~~ 95 (160)
T cd00876 61 ----------------------------------------SAMRDLYIRQGDGFILVYSITD-----RESFEEIKGYREQ 95 (160)
T ss_pred ----------------------------------------HHHHHHHHhcCCEEEEEEECCC-----HHHHHHHHHHHHH
Confidence 2234456888999999997432 1122233344433
Q ss_pred eecc-CCCcccccccceeeccC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+... .....|+.++++|.|..
T Consensus 96 ~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 96 ILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred HHHhcCCCCCcEEEEEECCccc
Confidence 3332 22578889999999985
No 324
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.13 E-value=5.2e-11 Score=100.01 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=85.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
.||+++|++|||||||+.+|..+.|...+.||+...+...+.+++..+.+.+||+++..++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------------- 62 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY------------------- 62 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhh-------------------
Confidence 6999999999999999999999999999999998888888888888888999987762111
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
..++..+++.+++++++|+.... .....+..|+.
T Consensus 63 -----------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~~~~ 96 (180)
T cd04137 63 -----------------------------------------SILPQKYSIGIHGYILVYSVTSR-----KSFEVVKVIYD 96 (180)
T ss_pred -----------------------------------------HHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHHHHH
Confidence 22344578889999999974431 11122333333
Q ss_pred eeecc-CCCcccccccceeeccC
Q psy9997 164 FISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
.+... .....|+.+++||.|+.
T Consensus 97 ~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 97 KILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HHHHhcCCCCCCEEEEEEchhhh
Confidence 33222 23456788999999985
No 325
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.13 E-value=1.4e-10 Score=112.79 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=44.9
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
+.+|||+|++.|.......++.+|++++|+|.++...-. .. .++..... .++|+++++||+|+....
T Consensus 81 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~-~l~~~~~~--~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 81 INLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TR-KLMEVCRL--RDTPIFTFINKLDRDGRE 147 (526)
T ss_pred EEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HH-HHHHHHHh--cCCCEEEEEECCcccccC
Confidence 345666666766655555678899999999998753222 12 33333332 479999999999987643
No 326
>CHL00071 tufA elongation factor Tu
Probab=99.13 E-value=9.3e-11 Score=111.25 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+.|+||+..|.......+..+|++++|.|......-+... .+..+.. .++| +|+|.||+|+.......
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~--~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~----- 147 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKE--HILLAKQ--VGVPNIVVFLNKEDQVDDEELL----- 147 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH--HHHHHHH--cCCCEEEEEEEccCCCCHHHHH-----
Confidence 346677777776555555677899999999998643222221 2223332 3678 77899999997532111
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCC
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQKG 303 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~ 303 (330)
+...+++..+.+..+. .+++.+||.+|.|
T Consensus 148 ----~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 148 ----ELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred ----HHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 1123456666665442 6899999999974
No 327
>PRK09866 hypothetical protein; Provisional
Probab=99.12 E-value=1.6e-10 Score=111.60 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=75.2
Q ss_pred cccccccccccccc-----ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 190 RDRSLFDTAGQEDY-----DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 190 ~~~~~~D~~g~e~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
-.+.+.||||...- .......+..+|++++|.|.+...+..+. ..++.+.+...+.|+++|.||+|+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dr--- 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDR--- 304 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCc---
Confidence 45678999999652 11233468899999999999876555543 245555554334699999999998642
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHh----C--CeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKEL----K--AVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~----~--~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
..-..+....+.... + ...++.+||+.|.|++++++.+..
T Consensus 305 ---------eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 ---------NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 112234444443321 1 235899999999999999998876
No 328
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.12 E-value=8.1e-11 Score=104.51 Aligned_cols=166 Identities=25% Similarity=0.251 Sum_probs=107.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC-CCCCCCce-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.-++|.|.+|||||||++++++.+- ...|+-|. +....+ ++.....+|+.||||.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGh---fe~~~~R~QvIDTPGl-------------------- 225 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGH---FERGYLRIQVIDTPGL-------------------- 225 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEee---eecCCceEEEecCCcc--------------------
Confidence 4578999999999999999998763 33444333 333222 2234457899999997
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.+++....+.. |+..-..- -.=+++++++|
T Consensus 226 ------LDRPl~ErN~I------------------------------------------E~qAi~AL--~hl~~~IlF~~ 255 (346)
T COG1084 226 ------LDRPLEERNEI------------------------------------------ERQAILAL--RHLAGVILFLF 255 (346)
T ss_pred ------cCCChHHhcHH------------------------------------------HHHHHHHH--HHhcCeEEEEE
Confidence 12222211110 11111111 11257889999
Q ss_pred EcCChh--hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPS--SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~--s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|.+... +.+... .++.+++..+. .|+++|.||+|.... -..+++......-+......+|+.
T Consensus 256 D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~~--------------e~~~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 256 DPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIADE--------------EKLEEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred cCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccch--------------hHHHHHHHHHHhhccccccceeee
Confidence 988544 444544 67888888876 999999999999753 233444445555554557889999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
.+.+++.+-..+...+.+.
T Consensus 320 ~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 320 KGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ehhhHHHHHHHHHHHhhch
Confidence 9999998888887776654
No 329
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.12 E-value=5.2e-11 Score=99.50 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=78.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.++..+.+ ..+.||++. ....+.++ .+.+.+||+++...+
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~--~~~l~l~D~~G~~~~---------------- 71 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF-QIKTLEYE--GYKLNIWDVGGQKTL---------------- 71 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc-ceEEEEEC--CEEEEEEECCCCHHH----------------
Confidence 4578999999999999999999998754 567788862 23445555 467899988862211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.++..+++++|++++|||..... ++ .....
T Consensus 72 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~--s~---~~~~~ 102 (173)
T cd04154 72 --------------------------------------------RPYWRNYFESTDALIWVVDSSDRL--RL---DDCKR 102 (173)
T ss_pred --------------------------------------------HHHHHHHhCCCCEEEEEEECCCHH--HH---HHHHH
Confidence 223456789999999999855431 11 11222
Q ss_pred cceeeec-cCCCcccccccceeeccC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
|+..... ......|+..++||.|+.
T Consensus 103 ~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 103 ELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred HHHHHHhChhhcCCCEEEEEECcccc
Confidence 3322222 223568889999999985
No 330
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.10 E-value=7.3e-10 Score=106.77 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=58.7
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNK 272 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~ 272 (330)
.++||+|++.|.......+..+|++++|.|++....-.... .+. +.......|+|+|.||+|+.......
T Consensus 110 ~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~--l~~~lg~~~iIvvvNKiD~~~~~~~~------- 179 (474)
T PRK05124 110 IIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRR-HSF--IATLLGIKHLVVAVNKMDLVDYSEEV------- 179 (474)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchH-HHH--HHHHhCCCceEEEEEeeccccchhHH-------
Confidence 34555555666443444468899999999987542211111 111 11111235799999999997431100
Q ss_pred CCCcCHHHHHHHHHHhC---CeeEEEEeeccCCCHHHH
Q psy9997 273 QKPISFEQGEKLAKELK---AVKYVECSALTQKGLKNV 307 (330)
Q Consensus 273 ~~~v~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~~ 307 (330)
.....++...+....+ ..+++++||++|.|++++
T Consensus 180 -~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 -FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred -HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 0011123333344332 367999999999999764
No 331
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.10 E-value=2.1e-11 Score=101.52 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=34.6
Q ss_pred cccCCCEEEEEEEcC-ChhhHhhhhhcchhhhhhc---CCCCcEEEEEeccCCCCC
Q psy9997 210 SYPQTDVFLVCFSVV-SPSSFENVKEKWVPEITHH---CQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~---~~~~piilV~nK~Dl~~~ 261 (330)
+..++.++|+|.|.+ .+....++.+.++..+... ...+|+++++||.|+..+
T Consensus 72 ~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 72 YLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred chhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 356789999999987 4667777773333333332 257999999999999875
No 332
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.10 E-value=7.8e-10 Score=104.83 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=58.5
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~ 273 (330)
++||+|++.|.......+..+|++++|+|.+....-+... .| ..+... ...++++|.||+|+.......
T Consensus 84 liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~-~~~~iivviNK~D~~~~~~~~-------- 152 (406)
T TIGR02034 84 VADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HS-YIASLL-GIRHVVLAVNKMDLVDYDEEV-------- 152 (406)
T ss_pred EEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHc-CCCcEEEEEEecccccchHHH--------
Confidence 4444444665444444677899999999987543222111 11 112221 234689999999997531100
Q ss_pred CCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHH
Q psy9997 274 KPISFEQGEKLAKELK--AVKYVECSALTQKGLKN 306 (330)
Q Consensus 274 ~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~ 306 (330)
-....++...+.+..+ ..+++++||++|.|+++
T Consensus 153 ~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 0011233344444443 24699999999999986
No 333
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.09 E-value=3.5e-10 Score=100.22 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=116.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCccc-------cccCCCCCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY-------DRLRPLSYPQ 134 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~l~~~~~~~ 134 (330)
-..++++|.++||||||++++++.+- ...|.-|.-...--- ...+...+|+.|+||.=.- ..-.-+-.|+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~--l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGM--LEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccce--EeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 45789999999999999999998653 233332221111112 2345567899999973111 1223467899
Q ss_pred CceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccc--cccccccccc-cccccCccc
Q psy9997 135 TDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDR--SLFDTAGQED-YDRLRPLSY 211 (330)
Q Consensus 135 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~D~~g~e~-~~~~~~~~~ 211 (330)
||.+++|.|.......--.-.+++.+.. .......|...+...+. .+.++.- .+-+.. .+. ..-+...-+
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~G-Irlnk~~p~V~I~kk~~-----gGI~i~~t~~l~~~d-~~~ir~iL~Ey~I 213 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVG-IRLNKRPPDVTIKKKES-----GGIRINGTGPLTHLD-EDTVRAILREYRI 213 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcC-eEecCCCCceEEEEecc-----CCEEEecccccccCC-HHHHHHHHHHhCc
Confidence 9999999986644321111111221111 00111112222211000 0000000 000000 011 112233335
Q ss_pred cCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 212 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 212 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
.+|+++|-. .-+.+++.+. +.....-+|.+.|.||+|+.. .+++..+.+..
T Consensus 214 ~nA~V~Ir~-----dvTlDd~id~----l~~nrvY~p~l~v~NKiD~~~-----------------~e~~~~l~~~~--- 264 (365)
T COG1163 214 HNADVLIRE-----DVTLDDLIDA----LEGNRVYKPALYVVNKIDLPG-----------------LEELERLARKP--- 264 (365)
T ss_pred ccceEEEec-----CCcHHHHHHH----HhhcceeeeeEEEEecccccC-----------------HHHHHHHHhcc---
Confidence 566665532 2344444322 222223589999999999964 35566666665
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.++.+||+.+.|++++.+.+.+.+
T Consensus 265 ~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 265 NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred ceEEEecccCCCHHHHHHHHHHhh
Confidence 589999999999999999998877
No 334
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.08 E-value=3e-10 Score=110.52 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=43.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+|||+|+..|.......++.+|++++|+|.++. ++...+.++..... .++|+++|+||+|+...
T Consensus 82 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~~~--~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 82 VNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVTRL--RDTPIFTFMNKLDRDIR 147 (527)
T ss_pred EEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence 34566666666655555567889999999998864 22222134433332 47899999999998643
No 335
>PRK00049 elongation factor Tu; Reviewed
Probab=99.08 E-value=3.2e-10 Score=107.07 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=67.1
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEE-EEEeccCCCCCchhhHHhhhC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFL-LVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.+.||+|+..|.......+..+|++++|.|.+....-+.. .++..+.. .++|.+ ++.||+|+.......
T Consensus 78 ~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~--~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~------ 147 (396)
T PRK00049 78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ--VGVPYIVVFLNKCDMVDDEELL------ 147 (396)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHH--HHHHHHHH--cCCCEEEEEEeecCCcchHHHH------
Confidence 4567777777755555667899999999999864322222 22333332 267876 689999996421100
Q ss_pred CCCCcCHHHHHHHHHHhC----CeeEEEEeeccCC----------CHHHHHHHHHHHh
Q psy9997 272 KQKPISFEQGEKLAKELK----AVKYVECSALTQK----------GLKNVFDEAILAA 315 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~----------~v~~~f~~l~~~i 315 (330)
+...++...+....+ ..+++.+||.+|. ++.++++++...+
T Consensus 148 ---~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 148 ---ELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ---HHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 111234444554433 2689999999875 4567777666543
No 336
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.06 E-value=7e-11 Score=97.20 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=75.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC-CCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+|+++|++|||||||+.+|..+. +...+.||++-... . +....+.+.+||+++..++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~--~~~~~~~~~l~Dt~G~~~~------------------- 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-S--FEKGNLSFTAFDMSGQGKY------------------- 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-E--EEECCEEEEEEECCCCHhh-------------------
Confidence 58999999999999999999876 46778899874332 1 2234577889988762211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+.++..||++++++++|+|.+... .+ .....|+.
T Consensus 59 -----------------------------------------~~~~~~~~~~~d~ii~v~D~~~~~--~~---~~~~~~~~ 92 (162)
T cd04157 59 -----------------------------------------RGLWEHYYKNIQGIIFVIDSSDRL--RL---VVVKDELE 92 (162)
T ss_pred -----------------------------------------HHHHHHHHccCCEEEEEEeCCcHH--HH---HHHHHHHH
Confidence 334556889999999999855321 11 11122322
Q ss_pred eeecc---CCCcccccccceeeccCC
Q psy9997 164 FISTE---HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~~---~~~~~~~~~~g~~~~~~~ 186 (330)
.+... .....|+.+++||.|+..
T Consensus 93 ~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 93 LLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred HHHcCcccccCCCCEEEEEeCccccC
Confidence 22111 235688999999999853
No 337
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.05 E-value=2.7e-10 Score=86.91 Aligned_cols=83 Identities=22% Similarity=0.231 Sum_probs=63.9
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
...++|+++++-..++++|--. ..+.... ..|+|-|.+|.|+.++ -..+.+..|..+-|
T Consensus 61 t~~dadvi~~v~~and~~s~f~------p~f~~~~-~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaG 119 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFP------PGFLDIG-VKKVIGVVTKADLAED--------------ADISLVKRWLREAG 119 (148)
T ss_pred HhhccceeeeeecccCccccCC------ccccccc-ccceEEEEecccccch--------------HhHHHHHHHHHHcC
Confidence 4567899999999998876332 2233222 4569999999999854 24466778888889
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
+-++|++||.++.||+++++.+..
T Consensus 120 a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 120 AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred CcceEEEeccCcccHHHHHHHHHh
Confidence 999999999999999999998753
No 338
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.04 E-value=1.1e-09 Score=112.81 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=73.4
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|..++...+..+|++++|+|+++ +++++.+. .+.. .++|+++|+||+|+......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~-----~lk~--~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN-----ILRQ--YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH-----HHHH--cCCCEEEEEECCCCccccccccch
Confidence 5678888888888877778888999999999986 66666654 2222 26899999999999642110
Q ss_pred --hHHhhhCCCC-------------------CcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 265 --LEKLAKNKQK-------------------PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 265 --~~~~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..++....++ ....+.........+.++++++||++|+|+++++..+...
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0000000000 0000000001112344789999999999999999877543
No 339
>KOG1145|consensus
Probab=99.03 E-value=7.3e-10 Score=104.05 Aligned_cols=109 Identities=23% Similarity=0.347 Sum_probs=76.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
..|.||||+..|..++.....-+|+++||....| +++.+.+.+ ....++|+|+..||+|....++-....
T Consensus 203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh-------Ak~A~VpiVvAinKiDkp~a~pekv~~ 275 (683)
T KOG1145|consen 203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH-------AKSANVPIVVAINKIDKPGANPEKVKR 275 (683)
T ss_pred EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH-------HHhcCCCEEEEEeccCCCCCCHHHHHH
Confidence 3466777779999999999999999999998876 566666651 122589999999999987653311100
Q ss_pred hhCCCCCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 269 AKNKQKPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.....+.. .+.+ |.++++++||++|.|++.+-++++..+
T Consensus 276 -------eL~~~gi~-~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 276 -------ELLSQGIV-VEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred -------HHHHcCcc-HHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 00001111 1222 447899999999999999999886654
No 340
>KOG0090|consensus
Probab=99.02 E-value=2.4e-09 Score=89.45 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=58.7
Q ss_pred CCCEEEEEEEcC-ChhhHhhhhhcchhhhhhc---CCCCcEEEEEeccCCCCCchhhH-------Hhh-----hCCCCCc
Q psy9997 213 QTDVFLVCFSVV-SPSSFENVKEKWVPEITHH---CQKTPFLLVGTQIDLREDAPTLE-------KLA-----KNKQKPI 276 (330)
Q Consensus 213 ~~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~---~~~~piilV~nK~Dl~~~~~~~~-------~~~-----~~~~~~v 276 (330)
.+-++++|.|.. .+....++.+.++..+... ...+|+++++||.|+..+.+..- |+. ....+.+
T Consensus 108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~ 187 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSI 187 (238)
T ss_pred cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 577888888864 5666666763333333333 24789999999999987643211 000 0000111
Q ss_pred C----------HHHH--HHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 277 S----------FEQG--EKLAKEL-KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 277 ~----------~~~~--~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
. -.++ ..|+.-. ..+.|.|.|++.+ +++++-+++-+.
T Consensus 188 ~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 188 SDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1 1111 2233322 2367999999998 889888877554
No 341
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.02 E-value=2.7e-10 Score=95.37 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=78.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|.. +.||++.++. .+.++ .+.+.+||+++...
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~------------------ 71 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQES------------------ 71 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHH------------------
Confidence 46899999999999999999999999875 6788876653 23333 57788898776211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ...+..+|+++|++++|+|.+... .+ .....|
T Consensus 72 ------~------------------------------------~~~~~~~~~~~d~vi~V~D~s~~~--~~---~~~~~~ 104 (174)
T cd04153 72 ------L------------------------------------RSSWNTYYTNTDAVILVIDSTDRE--RL---PLTKEE 104 (174)
T ss_pred ------H------------------------------------HHHHHHHhhcCCEEEEEEECCCHH--HH---HHHHHH
Confidence 1 233456789999999999854321 11 122223
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.. ......|+.+++||.|+.
T Consensus 105 l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 105 LYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred HHHHHhchhhcCCCEEEEEECCCCC
Confidence 333222 223567889999999985
No 342
>KOG1707|consensus
Probab=99.02 E-value=9.6e-10 Score=104.03 Aligned_cols=162 Identities=25% Similarity=0.330 Sum_probs=113.4
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+.+.++|+.++|||.+++.|.++.+...+..+....|.. .+.+.+....+.+.|.... .
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~----------------- 485 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-D----------------- 485 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-c-----------------
Confidence 35799999999999999999999998877776666665543 4444455444444443321 0
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
...+...- ..||+++++
T Consensus 486 --------------------------------------------------------------~~~l~~ke-~~cDv~~~~ 502 (625)
T KOG1707|consen 486 --------------------------------------------------------------QDFLTSKE-AACDVACLV 502 (625)
T ss_pred --------------------------------------------------------------cccccCcc-ceeeeEEEe
Confidence 00000111 569999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||.+++.+|+.+. ..+. ........|+++|++|+|+.+.. ....... ..++++++..+-+..|+++
T Consensus 503 YDsS~p~sf~~~a-~v~~-~~~~~~~~Pc~~va~K~dlDe~~-----------Q~~~iqp-de~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 503 YDSSNPRSFEYLA-EVYN-KYFDLYKIPCLMVATKADLDEVP-----------QRYSIQP-DEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred cccCCchHHHHHH-HHHH-HhhhccCCceEEEeeccccchhh-----------hccCCCh-HHHHHhcCCCCCeeeccCC
Confidence 9999999999987 3322 22233689999999999997651 1122222 6799999876678888885
Q ss_pred CCCHHHHHHHHHHHhcCCC
Q psy9997 301 QKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~ 319 (330)
.-. .++|..|..++..+-
T Consensus 569 ~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCC-chHHHHHHHhhhCCC
Confidence 333 899999999998765
No 343
>PLN03126 Elongation factor Tu; Provisional
Probab=99.01 E-value=5.4e-10 Score=107.37 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=63.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~ 269 (330)
.+.++|++|++.|-......+..+|++++|+|.++...-+.. .++..+.. .++| +|++.||+|+......
T Consensus 145 ~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~--e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~----- 215 (478)
T PLN03126 145 HYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTK--EHILLAKQ--VGVPNMVVFLNKQDQVDDEEL----- 215 (478)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCeEEEEEecccccCHHHH-----
Confidence 345788888888866666667789999999998864332222 22223332 2677 7889999999653111
Q ss_pred hCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCC
Q psy9997 270 KNKQKPISFEQGEKLAKELK----AVKYVECSALTQKG 303 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~ 303 (330)
.+...++...+.+..+ ..+++.+||.+|.+
T Consensus 216 ----~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 216 ----LELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred ----HHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 1112235555655542 36899999998854
No 344
>KOG0462|consensus
Probab=99.01 E-value=2.9e-09 Score=100.09 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=68.2
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
-.|+..-...+..|++++|+.|.+.----+.+. .++-.+. .+..+|.|.||+|+..+... .+ ..+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~a-nf~lAfe---~~L~iIpVlNKIDlp~adpe----------~V-~~q 200 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVA-NFYLAFE---AGLAIIPVLNKIDLPSADPE----------RV-ENQ 200 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHH-HHHHHHH---cCCeEEEeeeccCCCCCCHH----------HH-HHH
Confidence 444444455677899999999998644333443 2322232 37889999999999876321 11 112
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
...+..... ...+.+|||+|.|++++++++++.+=-++..
T Consensus 201 ~~~lF~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 201 LFELFDIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred HHHHhcCCc-cceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 222222222 3689999999999999999999988655443
No 345
>KOG1191|consensus
Probab=98.99 E-value=3.2e-10 Score=105.41 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=106.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..++|+++|.+|||||||+|.|..+.. ......|.-|.....++++|.++. +.||+|.+.-.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~--L~DTAGiRe~~-------------- 330 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVR--LSDTAGIREES-------------- 330 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEE--EEecccccccc--------------
Confidence 458999999999999999999998763 455566777777778888887655 57999982200
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
.......|.++- ...++.||.+++
T Consensus 331 ----------------------------------------------------~~~iE~~gI~rA----~k~~~~advi~~ 354 (531)
T KOG1191|consen 331 ----------------------------------------------------NDGIEALGIERA----RKRIERADVILL 354 (531)
T ss_pred ----------------------------------------------------CChhHHHhHHHH----HHHHhhcCEEEE
Confidence 000000111111 223567999999
Q ss_pred EEEcCChhhHhhhh-hcchhhhhhcC-------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH--hC
Q psy9997 220 CFSVVSPSSFENVK-EKWVPEITHHC-------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE--LK 289 (330)
Q Consensus 220 v~d~~~~~s~~~~~-~~~~~~i~~~~-------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~ 289 (330)
|+|.....+-+++. ...+....... ...|++++.||+|+...-. +... ....+... .+
T Consensus 355 vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~-----------~~~~-~~~~~~~~~~~~ 422 (531)
T KOG1191|consen 355 VVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP-----------EMTK-IPVVYPSAEGRS 422 (531)
T ss_pred EecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc-----------cccC-CceeccccccCc
Confidence 99994332222222 02222222211 3579999999999976411 1111 00111111 11
Q ss_pred C-eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 290 A-VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 290 ~-~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
. ....++||++++|++++..++.......
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 1 2356699999999999999888777644
No 346
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.99 E-value=7.9e-10 Score=103.86 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=50.6
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC-CCC-----CceeecceE-EE---------------EECC-ceeeeeeeecCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYV-----PTVFDNYAV-TV---------------MIGG-EPYTLGLFDTAG 120 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~-----~t~~~~~~~-~~---------------~~~~-~~~~l~i~Dt~g 120 (330)
+||.++|.+|||||||++++++..+.. +|+ |+.|..+.. .+ ..++ ....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877632 442 333332211 00 0111 236688999998
Q ss_pred C----ccccccCCCC---CCCCceEEEEec
Q psy9997 121 Q----EDYDRLRPLS---YPQTDVFLVCFG 143 (330)
Q Consensus 121 ~----~~~~~l~~~~---~~~~~~~i~v~~ 143 (330)
. .....+...| ++++|+++.|++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd 111 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVD 111 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEe
Confidence 4 2223344445 677777777776
No 347
>PLN03127 Elongation factor Tu; Provisional
Probab=98.99 E-value=1.2e-09 Score=104.32 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=63.3
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.+.||||++.|-......+..+|++++|.|.++...-+.. ..+..+.. .++| +|+|.||+|+.......
T Consensus 127 ~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~--e~l~~~~~--~gip~iIvviNKiDlv~~~~~~------ 196 (447)
T PLN03127 127 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVVFLNKVDVVDDEELL------ 196 (447)
T ss_pred EEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEEEeeccCCHHHHH------
Confidence 4566666666654444455679999999998754322221 12222322 3678 57899999997531100
Q ss_pred CCCCcCHHHHHHHHHHhC----CeeEEEEeec---cCCC-------HHHHHHHHHHHhc
Q psy9997 272 KQKPISFEQGEKLAKELK----AVKYVECSAL---TQKG-------LKNVFDEAILAAL 316 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~---~~~~-------v~~~f~~l~~~i~ 316 (330)
+...++..++....+ .++++.+||. +|.| +.++++++...+-
T Consensus 197 ---~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 197 ---ELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred ---HHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 011123444444332 2678888775 4555 6777777665543
No 348
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.98 E-value=2.9e-09 Score=90.93 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=60.4
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCC---CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ---KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
....|++++|.++.+ -+-++. ..++.+.+.+. -.++++|.||.|......-.+-+ . -.....+.+.+.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~-----~-~~~~~l~~l~~~ 151 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYL-----E-NSCEALKRLLEK 151 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHH-----H-hccHHHHHHHHH
Confidence 467899999999876 332222 34555555432 36899999999987542111100 0 112455566666
Q ss_pred hCCeeEEEEe-----eccCCCHHHHHHHHHHHhcCC
Q psy9997 288 LKAVKYVECS-----ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 288 ~~~~~~~e~S-----a~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+ -.|+..+ +..+.+++++++.+-.++-++
T Consensus 152 c~-~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 152 CG-GRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred hC-CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 55 3554444 456788999999988887763
No 349
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.98 E-value=4.3e-10 Score=87.57 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=35.9
Q ss_pred eEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
||+++|.+|+|||||++++++.+. .....++........+..++..+ .++||||.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~ 57 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGI 57 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCC
Confidence 689999999999999999998643 22222222222223334444444 59999997
No 350
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.98 E-value=1.1e-09 Score=109.46 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=63.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.++||+|++.|.......+..+|++++|.|++....-+... ....+.. ....|+++|.||+|+.......
T Consensus 106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~-~~~~~iivvvNK~D~~~~~~~~------ 176 (632)
T PRK05506 106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASL-LGIRHVVLAVNKMDLVDYDQEV------ 176 (632)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHH-hCCCeEEEEEEecccccchhHH------
Confidence 457899998887655555678999999999997543222111 1111221 1236789999999996421100
Q ss_pred CCCCcCHHHHHHHHHHhCC--eeEEEEeeccCCCHHH
Q psy9997 272 KQKPISFEQGEKLAKELKA--VKYVECSALTQKGLKN 306 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~ 306 (330)
.....++...+.+..+. .+++.+||++|.|+++
T Consensus 177 --~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 --FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred --HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 00012333444444442 4699999999999874
No 351
>KOG0096|consensus
Probab=98.96 E-value=1e-09 Score=89.69 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=86.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCE-EEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
.++|++++||.|.|||+++.|++.++|...|.+|++......+-..+. .+++..|++++.+.+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~---------------- 72 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKK---------------- 72 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceee----------------
Confidence 479999999999999999999999999999999999777766655433 599999999883322
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+| ++..||-.+.+++++||...+. ....+.+
T Consensus 73 --------------------------------------gg------lrdgyyI~~qcAiimFdVtsr~-----t~~n~~r 103 (216)
T KOG0096|consen 73 --------------------------------------GG------LRDGYYIQGQCAIIMFDVTSRF-----TYKNVPR 103 (216)
T ss_pred --------------------------------------cc------cccccEEecceeEEEeeeeehh-----hhhcchH
Confidence 11 1345777888999998855432 2233444
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|.-.+.. .+...|+++-|+|.|+.
T Consensus 104 whrd~~r-v~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 104 WHRDLVR-VRENIPIVLCGNKVDIK 127 (216)
T ss_pred HHHHHHH-HhcCCCeeeeccceecc
Confidence 4433322 23448899999999984
No 352
>PRK13768 GTPase; Provisional
Probab=98.95 E-value=5.2e-10 Score=99.22 Aligned_cols=125 Identities=16% Similarity=0.058 Sum_probs=73.2
Q ss_pred ccccccccccccccc---ccCcc---ccC--CCEEEEEEEcCChhhHhhhh-hcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDR---LRPLS---YPQ--TDVFLVCFSVVSPSSFENVK-EKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~---~~~~~---~~~--~d~~ilv~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
++.+||++|+.+... ....+ +.. ++++++++|.+......+.. ..|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 678999999977432 22222 222 88999999996543332222 1244433333358999999999999865
Q ss_pred chhhHHhhhCCC---------CCcC--HHHHHHH---HHHhC-CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 262 APTLEKLAKNKQ---------KPIS--FEQGEKL---AKELK-AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 262 ~~~~~~~~~~~~---------~~v~--~~~~~~~---~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
............ .... .+-.+++ .++.+ ..+++++||+++.|++++.+.+...+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 332111110000 0000 1111122 22333 24789999999999999999987765
No 353
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.94 E-value=6.2e-10 Score=91.43 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=75.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+|..+.+.. +.||++..+ ..+.. +..+.+.+||+++...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~-------------------- 57 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKM-------------------- 57 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEe-CCceEEEEEECCCCHhH--------------------
Confidence 68999999999999999999999864 467776433 23333 34577889987762111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..+++++|++++|+|..... .......|+..
T Consensus 58 ----------------------------------------~~~~~~~~~~~~~iv~v~D~~~~~-----~~~~~~~~~~~ 92 (160)
T cd04156 58 ----------------------------------------RTVWKCYLENTDGLVYVVDSSDEA-----RLDESQKELKH 92 (160)
T ss_pred ----------------------------------------HHHHHHHhccCCEEEEEEECCcHH-----HHHHHHHHHHH
Confidence 223456788999999999855321 11222333333
Q ss_pred eecc-CCCcccccccceeeccC
Q psy9997 165 ISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+... .....|+.+++||.|+.
T Consensus 93 ~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 93 ILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred HHhchhhcCCCEEEEEECcccc
Confidence 3222 22568899999999984
No 354
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.94 E-value=2.8e-09 Score=107.59 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=46.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+|||+|+..+.......++.+|++++|+|.++....+... ++..+.. .++|+++|+||+|+...
T Consensus 77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 445666666666555666788899999999998765554433 2233333 36899999999999864
No 355
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.93 E-value=4.6e-10 Score=92.24 Aligned_cols=112 Identities=14% Similarity=0.101 Sum_probs=74.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.++..+.+. .+.||++.++. .+. ...+.+++||+++...+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~-------------------- 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSI-------------------- 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE-EEE--ECCEEEEEEECCCCHHH--------------------
Confidence 7999999999999999999988886 46788765543 233 34577899988862111
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
+.++..++++++++++++|..... .+ .....|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~~~~ii~v~d~~~~~--~~---~~~~~~~~~ 91 (158)
T cd04151 57 ----------------------------------------RPYWRCYYSNTDAIIYVVDSTDRD--RL---GTAKEELHA 91 (158)
T ss_pred ----------------------------------------HHHHHHHhcCCCEEEEEEECCCHH--HH---HHHHHHHHH
Confidence 334567889999999999854321 11 011122221
Q ss_pred e-eccCCCcccccccceeeccC
Q psy9997 165 I-STEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~-~~~~~~~~~~~~~g~~~~~~ 185 (330)
. ........|+..++||.|+.
T Consensus 92 ~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 92 MLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred HHhchhhcCCcEEEEEeCCCCC
Confidence 1 11223467899999999985
No 356
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.93 E-value=2.7e-09 Score=95.40 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=65.0
Q ss_pred ccCCCEEEEEEEcCChh---hHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPS---SFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.+.+++.+.|++..+ -.++.. ....++..+. .+.|.++|+||+|+..+ .+...+....+
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~------------~e~~~~~~~~l 301 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKIDLPLD------------EEELEELKKAL 301 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEeccCCCcC------------HHHHHHHHHHH
Confidence 45688999999998554 355555 5667777664 47999999999997654 22222334444
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+..+......+||.++.|++++...+...+-+.
T Consensus 302 ~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 302 AEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 4444422222299999999999999888777655
No 357
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.91 E-value=7.2e-09 Score=92.74 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=36.6
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
..+.......++.+|++++|.|.++...-... ..+..+.. .++|++++.||+|+...
T Consensus 75 ~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~--~~~~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 75 VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTE--TVWRQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 33434445567789999999998764322221 23333333 36899999999999753
No 358
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.90 E-value=1.9e-08 Score=85.93 Aligned_cols=83 Identities=25% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH-hCCee
Q psy9997 214 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE-LKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~ 292 (330)
++.++.|+|+++.++... .+..++ ...-++|+||+|+... .....+...+..+. ....+
T Consensus 113 ~~~~i~vvD~~~~~~~~~---~~~~qi-----~~ad~~~~~k~d~~~~------------~~~~~~~~~~~~~~~~~~~~ 172 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR---KGGPGI-----TRSDLLVINKIDLAPM------------VGADLGVMERDAKKMRGEKP 172 (199)
T ss_pred hCcEEEEEEcchhhhhhh---hhHhHh-----hhccEEEEEhhhcccc------------ccccHHHHHHHHHHhCCCCC
Confidence 577999999987655321 111111 2234899999999743 11223333334443 22368
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 293 YVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
++++||++|.|++++|+.+.+..+
T Consensus 173 i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 173 FIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999987654
No 359
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.89 E-value=4.1e-09 Score=100.71 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=75.0
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
.+.+.|++|++.|-......+..+|++++|.|++... .-+... .+ . +.....-.|+|+|.||+|+......
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl-~-i~~~lgi~~iIVvlNKiDlv~~~~~----- 189 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HL-A-AVEIMKLKHIIILQNKIDLVKEAQA----- 189 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HH-H-HHHHcCCCcEEEEEecccccCHHHH-----
Confidence 3578999999998776666778999999999998631 111111 11 1 1222223579999999999753110
Q ss_pred hCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 270 KNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
....++...+.+.. ...+++.+||++|.|++++++.|...+-.+
T Consensus 190 -----~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 190 -----QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred -----HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 11123333333321 236899999999999999999988755433
No 360
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.88 E-value=3.4e-09 Score=86.27 Aligned_cols=53 Identities=28% Similarity=0.248 Sum_probs=43.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.|+++|++|||||||++++..+.|...+.||++.++.. +..++ +.+.+||+++
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g 53 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGG 53 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCC
Confidence 48999999999999999999999999999999766543 33333 7788998776
No 361
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.88 E-value=2e-09 Score=91.19 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=76.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+..||+++|++|||||||+.++..+.+ ..+.||++... ..+.+++ ..+.+||+++....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~----------------- 76 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQA----------------- 76 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcce-EEEEECC--EEEEEEECCCCHHH-----------------
Confidence 478999999999999999999998887 46778876433 3455554 45677876651110
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..++++++++++|+|.... ..+ .....|
T Consensus 77 -------------------------------------------~~~~~~~~~~ad~iilV~D~~~~--~s~---~~~~~~ 108 (190)
T cd00879 77 -------------------------------------------RRLWKDYFPEVDGIVFLVDAADP--ERF---QESKEE 108 (190)
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCcH--HHH---HHHHHH
Confidence 12345678899999999985532 111 122234
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.. ......|+.+++||.|+.
T Consensus 109 ~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 109 LDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred HHHHHcCccccCCCEEEEEeCCCCC
Confidence 433322 223567889999999984
No 362
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.88 E-value=1.5e-08 Score=96.94 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=56.7
Q ss_pred cccccccccccccCccccCCCEEEEEEEcCChh---hHh---hhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHH
Q psy9997 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFE---NVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEK 267 (330)
Q Consensus 195 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~ 267 (330)
.|+||++.|.......+..+|++++|.|.+... .|+ ...+.|. .+.. .++| +|++.||.|.....-....
T Consensus 90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~--~gi~~iiv~vNKmD~~~~~~~~~~ 166 (446)
T PTZ00141 90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT--LGVKQMIVCINKMDDKTVNYSQER 166 (446)
T ss_pred EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH--cCCCeEEEEEEccccccchhhHHH
Confidence 344444655555555677899999999987642 111 1111121 1211 2555 7799999995421000000
Q ss_pred hhhCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHH
Q psy9997 268 LAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKN 306 (330)
Q Consensus 268 ~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 306 (330)
-....++..++....+ .++++.+||.+|.|+.+
T Consensus 167 ------~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 167 ------YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ------HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 0112234444444433 26799999999999864
No 363
>KOG0077|consensus
Probab=98.87 E-value=1.6e-09 Score=86.68 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=72.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
+..+|.+|+..-+..+..++..+|+++..+|+-|.+-|.+.. .-++.+.... .++|+++.+||+|...+.
T Consensus 66 ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~-~eld~ll~~e~la~vp~lilgnKId~p~a~------- 137 (193)
T KOG0077|consen 66 FTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESK-KELDALLSDESLATVPFLILGNKIDIPYAA------- 137 (193)
T ss_pred EEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHH-HHHHHHHhHHHHhcCcceeecccccCCCcc-------
Confidence 444555666777888889999999999999999999999887 3333333322 589999999999998762
Q ss_pred hCCCCCcCHHHHH------HHHHHhC----------CeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 270 KNKQKPISFEQGE------KLAKELK----------AVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 270 ~~~~~~v~~~~~~------~~~~~~~----------~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
++++.+ ++....+ ....+-+|...+.+--+.|.++..
T Consensus 138 -------se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 138 -------SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred -------cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 222221 1111111 123677788888877777766543
No 364
>KOG3905|consensus
Probab=98.86 E-value=1e-08 Score=90.81 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred CcEEEEEeccCCCCCchhhHHhhhCCC---CCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 247 TPFLLVGTQIDLREDAPTLEKLAKNKQ---KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 247 ~piilV~nK~Dl~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+|+++|.+|||...- ++.. .++. -..-....+.||-.+|+ ..+.+|+|...|++-++..|+++++-
T Consensus 223 i~vlVV~TK~D~~s~---leke-~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 223 IPVLVVCTKCDAVSV---LEKE-HEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CcEEEEEeccchhhH---hhhc-chhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence 799999999999532 0000 0000 11234557889999995 78889999999999999999999874
No 365
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.85 E-value=5.4e-09 Score=86.43 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=72.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC------CCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK------FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTC 78 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~------f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTs 78 (330)
+|+++|++|||||||+.++.... +...+.+|++.++. .+.++ ...+.+||+++...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~-------------- 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESL-------------- 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhh--------------
Confidence 58999999999999999987532 24456777765553 34444 467788988762211
Q ss_pred EEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 79 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
..++..++++++++++|+|..... .....
T Consensus 64 ----------------------------------------------~~~~~~~~~~~~~~v~vvd~~~~~-----~~~~~ 92 (167)
T cd04160 64 ----------------------------------------------RSLWDKYYAECHAIIYVIDSTDRE-----RFEES 92 (167)
T ss_pred ----------------------------------------------HHHHHHHhCCCCEEEEEEECchHH-----HHHHH
Confidence 223445788999999999854321 11122
Q ss_pred CCcceeeec-cCCCcccccccceeeccC
Q psy9997 159 GGWFWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..|+..... ......|+.+++||.|+.
T Consensus 93 ~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 93 KSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred HHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 233333222 223467888999999974
No 366
>KOG0082|consensus
Probab=98.84 E-value=2.4e-08 Score=90.91 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=87.4
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCC--hhhHhhhhh-------cchhhhhh--cCCCCcEEEEEeccCC
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS--PSSFENVKE-------KWVPEITH--HCQKTPFLLVGTQIDL 258 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~--~~s~~~~~~-------~~~~~i~~--~~~~~piilV~nK~Dl 258 (330)
..+.++|++||...+.-|..++.+++++|+|.++++ ...+++-.. .++..+-. ++.++++||+.||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 345667777777778888889999999999988773 222222111 12222222 2368999999999999
Q ss_pred CCCchhhH---HhhhCCCCCcCHHHHHHHHHHh---------CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 259 REDAPTLE---KLAKNKQKPISFEQGEKLAKEL---------KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 259 ~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
..+.-... ..-++.+..-..+++..|.+.. ..+.+..+.|.+..+|+.+|.++...++..
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 87643222 2335555556677777666532 224577889999999999999999988754
No 367
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.84 E-value=4.2e-09 Score=90.75 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-CCee
Q psy9997 214 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-KAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 292 (330)
.+..+.+.|+++.+... . .. ... ...|.++++||+|+... .....++..+..++. ...+
T Consensus 124 ~~~~i~Vvd~~~~d~~~--~-~~-~~~----~~~a~iiv~NK~Dl~~~------------~~~~~~~~~~~l~~~~~~~~ 183 (207)
T TIGR00073 124 EHMRVVLLSVTEGDDKP--L-KY-PGM----FKEADLIVINKADLAEA------------VGFDVEKMKADAKKINPEAE 183 (207)
T ss_pred cCeEEEEEecCcccchh--h-hh-HhH----HhhCCEEEEEHHHcccc------------chhhHHHHHHHHHHhCCCCC
Confidence 45566788887543211 1 01 111 24688999999999653 122233344444433 2368
Q ss_pred EEEEeeccCCCHHHHHHHHHHH
Q psy9997 293 YVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
++++||++|.|++++|+++.+.
T Consensus 184 i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 184 IILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999998764
No 368
>PRK12740 elongation factor G; Reviewed
Probab=98.83 E-value=5.2e-09 Score=105.56 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=48.3
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
.+.+|||+|+..+.......+..+|++++++|.+......... .| ..+.. .+.|+++|+||+|+...
T Consensus 61 ~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~-~~~~~--~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 61 KINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTET-VW-RQAEK--YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HH-HHHHH--cCCCEEEEEECCCCCCC
Confidence 3456677777766555666788999999999998876665543 23 33333 37899999999999754
No 369
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.82 E-value=5.6e-09 Score=84.57 Aligned_cols=58 Identities=38% Similarity=0.535 Sum_probs=49.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
++||+++|++|+|||||++++..+.++.++.+++...+ ...+..++..+.+.+||+.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G 59 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 59 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCC
Confidence 57999999999999999999999999888888887665 44577888778889998776
No 370
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.80 E-value=4.9e-09 Score=85.92 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=74.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
||+++|++|||||||+.+++.+.+ ..+.+|++.... .+.++ .+.+.+||+++...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~-------------------- 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKI-------------------- 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhh--------------------
Confidence 799999999999999999998884 567777764432 23333 467889987762211
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCccee
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWF 164 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 164 (330)
..++..++++++++++|||..... .......|+..
T Consensus 57 ----------------------------------------~~~~~~~~~~~~~~i~v~D~~~~~-----~~~~~~~~~~~ 91 (158)
T cd00878 57 ----------------------------------------RPLWKHYYENTNGIIFVVDSSDRE-----RIEEAKEELHK 91 (158)
T ss_pred ----------------------------------------HHHHHHHhccCCEEEEEEECCCHH-----HHHHHHHHHHH
Confidence 223456788999999999865421 11122233332
Q ss_pred eec-cCCCcccccccceeeccC
Q psy9997 165 IST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 165 ~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
+.. ...+..|+.+++||.|+.
T Consensus 92 ~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 92 LLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred HHhCcccCCCcEEEEeeccCCc
Confidence 222 224577889999999984
No 371
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.80 E-value=4.9e-09 Score=88.54 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=73.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|.+|||||||+.++..+.+. .+.||..... ..+.++ .+.+.+||+++....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~------------------ 74 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIG--NIKFTTFDLGGHQQA------------------ 74 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEEC--CEEEEEEECCCCHHH------------------
Confidence 689999999999999999999988774 4566764322 233333 356778877762111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWF 162 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~ 162 (330)
+.++..||++++++++|+|.+... .+ .....|+
T Consensus 75 ------------------------------------------~~~~~~~~~~ad~ii~vvD~~~~~--~~---~~~~~~l 107 (184)
T smart00178 75 ------------------------------------------RRLWKDYFPEVNGIVYLVDAYDKE--RF---AESKREL 107 (184)
T ss_pred ------------------------------------------HHHHHHHhCCCCEEEEEEECCcHH--HH---HHHHHHH
Confidence 234557899999999999864321 11 1122222
Q ss_pred eeeec-cCCCcccccccceeeccC
Q psy9997 163 WFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 163 ~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
..+.. ......|+..++||.|++
T Consensus 108 ~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 108 DALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred HHHHcChhhcCCCEEEEEeCcccc
Confidence 22211 223467899999999985
No 372
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=4.4e-08 Score=90.93 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+..+..|.+.+|+.|.+.----+.+. ..+-.+. .+.-+|-|.||+||..+.. ....++...-
T Consensus 94 SRSLAACEGalLvVDAsQGveAQTlA-N~YlAle---~~LeIiPViNKIDLP~Adp--------------ervk~eIe~~ 155 (603)
T COG0481 94 SRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPAADP--------------ERVKQEIEDI 155 (603)
T ss_pred hhhHhhCCCcEEEEECccchHHHHHH-HHHHHHH---cCcEEEEeeecccCCCCCH--------------HHHHHHHHHH
Confidence 34566899999999998765555554 3333333 3788999999999987522 1222333333
Q ss_pred hC--CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 288 LK--AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 288 ~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.| +...+.+|||+|.|+++++++++.++=.+...
T Consensus 156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred hCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 33 23478999999999999999999988666544
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.78 E-value=2.8e-08 Score=84.34 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=66.3
Q ss_pred cccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH
Q psy9997 203 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE 282 (330)
Q Consensus 203 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 282 (330)
+......+++++|++++|+|++++.. .|...+.....+.|+++|+||+|+... ....+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~-------------~~~~~~~~ 84 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPK-------------DKNLVRIK 84 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCC-------------CCCHHHHH
Confidence 46677778999999999999987542 344444333357899999999999643 12233333
Q ss_pred HHH-----HHhC--CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 283 KLA-----KELK--AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 283 ~~~-----~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+. +..+ ...++++||++|.|++++++.+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 85 NWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 333 2222 12589999999999999999998765
No 374
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.78 E-value=2.2e-08 Score=95.60 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=50.3
Q ss_pred CcEEEEEeccCCCCCchhhHHhhhCCCC--CcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 247 TPFLLVGTQIDLREDAPTLEKLAKNKQK--PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 247 ~piilV~nK~Dl~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+|++||++|+|.... ++......+. .+-..-.+.+|-+||+ ..+.+|++...|++.++..|.+++...+-.
T Consensus 197 ipi~VV~tksD~~~~---Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 197 IPIVVVCTKSDKIET---LEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred cceEEEEecccHHHH---HhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 799999999998652 1111111111 1233447788889985 778899999999999999999998865543
No 375
>KOG1673|consensus
Probab=98.72 E-value=5.7e-09 Score=82.61 Aligned_cols=58 Identities=29% Similarity=0.487 Sum_probs=53.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
++||-++||+.+|||||+-.|..+.+..++..|.+.++ .+++-+.+.++...+|+-.+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG 78 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG 78 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC
Confidence 68999999999999999999999999999999999777 77999999999999997665
No 376
>PRK12739 elongation factor G; Reviewed
Probab=98.72 E-value=1.6e-07 Score=94.99 Aligned_cols=57 Identities=14% Similarity=0.045 Sum_probs=37.5
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
..+.......++.+|++++|.|.++...-.... .+..+.. .+.|+|++.||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~--i~~~~~~--~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET--VWRQADK--YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 434334455677889999999988654333322 2333333 36899999999999854
No 377
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.71 E-value=6.4e-09 Score=105.32 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=41.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~ 260 (330)
+.+|||+|+..|.......++.+|++++|+|..+....+... .|. .+.. .+.|.++|.||+|...
T Consensus 88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~-~~~-~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTET-VLR-QALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHH-HHH-HHHH--cCCCEEEEEEChhccc
Confidence 344555555666555566788899999999987643322222 222 2211 3678899999999974
No 378
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.69 E-value=1e-08 Score=88.11 Aligned_cols=117 Identities=11% Similarity=0.066 Sum_probs=73.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeec
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~ 84 (330)
.|+++|++|||||+|+.++..+.|...+.++............+....+.+||+++..++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------------------- 61 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL-------------------- 61 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHH--------------------
Confidence 589999999999999999999998887766532221212222244566788887762221
Q ss_pred cCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCC-ceEEEEeccccchhhhcccccccCCcce
Q psy9997 85 TNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT-DVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+.....+|+++ +++++|+|..... ........|+.
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~~vV~VvD~~~~~----~~~~~~~~~l~ 97 (203)
T cd04105 62 ----------------------------------------RDKLLETLKNSAKGIVFVVDSATFQ----KNLKDVAEFLY 97 (203)
T ss_pred ----------------------------------------HHHHHHHHhccCCEEEEEEECccch----hHHHHHHHHHH
Confidence 12234467777 9999999865432 11122233333
Q ss_pred eeec---cCCCcccccccceeeccC
Q psy9997 164 FIST---EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 164 ~~~~---~~~~~~~~~~~g~~~~~~ 185 (330)
.+.. ...+..|+.+++||.|+.
T Consensus 98 ~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 98 DILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred HHHHHHhhccCCCCEEEEecchhhc
Confidence 2211 223678889999999873
No 379
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.66 E-value=2.8e-08 Score=89.39 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=39.6
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
....++|+++|.+|+||||++|++++++. .+.+.++...........+ ...+.++||||.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL 96 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGL 96 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCC
Confidence 34578999999999999999999998763 2222221111111122233 457899999998
No 380
>PRK00098 GTPase RsgA; Reviewed
Probab=98.66 E-value=6.5e-08 Score=87.96 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=66.0
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
.+.++|.+++|+|++++.++....+.|+..+.. .++|+++|+||+|+... .. ..++..++.+..+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~------------~~-~~~~~~~~~~~~g 141 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDD------------LE-EARELLALYRAIG 141 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCC------------HH-HHHHHHHHHHHCC
Confidence 468999999999999988777654478776654 47999999999999632 11 1223344455566
Q ss_pred CeeEEEEeeccCCCHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAI 312 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~ 312 (330)
.+++++||+++.|++++++.+.
T Consensus 142 -~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 142 -YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred -CeEEEEeCCCCccHHHHHhhcc
Confidence 6899999999999999998763
No 381
>KOG1144|consensus
Probab=98.65 E-value=3.8e-08 Score=95.37 Aligned_cols=132 Identities=22% Similarity=0.340 Sum_probs=84.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC------c
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED------A 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~------~ 262 (330)
+-+.||+|+|+|..++.....-||.+|||.|+. .+++.+.+. .++. .++|+|+..||+|..-. .
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~--rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM--RKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh--cCCCeEEeehhhhhhcccccCCCc
Confidence 457889999999999999999999999999997 466666654 2222 48999999999997532 1
Q ss_pred hhhHHhhhCCCCCc------CHHHHHHHHHHh-C------------CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC--
Q psy9997 263 PTLEKLAKNKQKPI------SFEQGEKLAKEL-K------------AVKYVECSALTQKGLKNVFDEAILAALEPPEP-- 321 (330)
Q Consensus 263 ~~~~~~~~~~~~~v------~~~~~~~~~~~~-~------------~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~-- 321 (330)
.....++....+.+ ......+|+++- + -+.++.+||.+|+|+.+++..|+.........
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 11111111000000 011122333321 1 14578999999999999999888766544333
Q ss_pred --CCCCCcccC
Q psy9997 322 --PKKRKCVLL 330 (330)
Q Consensus 322 --~~~~~~~~~ 330 (330)
..+-.|.||
T Consensus 695 ~y~~ev~cTVl 705 (1064)
T KOG1144|consen 695 AYVDEVQCTVL 705 (1064)
T ss_pred hhhhheeeEEE
Confidence 244555554
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.65 E-value=8.7e-08 Score=89.37 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=72.6
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|..+...+++.++++++|+|+.+.. . .|.+++.+...+.|+++|+||+|+... .+..++
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~-s~~~~l~~~~~~~piilV~NK~DLl~k-------------~~~~~~ 111 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFE-----G-SLIPELKRFVGGNPVLLVGNKIDLLPK-------------SVNLSK 111 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCC-----C-CccHHHHHHhCCCCEEEEEEchhhCCC-------------CCCHHH
Confidence 677888888889999999999986544 2 677787777668899999999999642 233344
Q ss_pred HHH----HHHHhCCe--eEEEEeeccCCCHHHHHHHHHHH
Q psy9997 281 GEK----LAKELKAV--KYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 281 ~~~----~~~~~~~~--~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+.+ ++++++.. .++++||++|.|++++|+.+...
T Consensus 112 ~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 112 IKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 443 45555521 48999999999999999998654
No 383
>KOG0084|consensus
Probab=98.64 E-value=1.9e-08 Score=83.13 Aligned_cols=45 Identities=33% Similarity=0.744 Sum_probs=26.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEEC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG 107 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~ 107 (330)
.+||+++|++|||||||+.||....|.+.|..|+|.++.. +++++
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~ 54 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD 54 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec
Confidence 4566666666666666666666666666666666655532 44443
No 384
>KOG1490|consensus
Probab=98.64 E-value=3.5e-08 Score=92.07 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=66.6
Q ss_pred CEEEEEEEcCCh--hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH---HHHHHHHhC
Q psy9997 215 DVFLVCFSVVSP--SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ---GEKLAKELK 289 (330)
Q Consensus 215 d~~ilv~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~ 289 (330)
.+++.+-|++.. -|..... .++..|+..+.+.|.|+|.||+|+... ..++++. .+.+... +
T Consensus 249 aaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~------------edL~~~~~~ll~~~~~~-~ 314 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRP------------EDLDQKNQELLQTIIDD-G 314 (620)
T ss_pred hhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCc------------cccCHHHHHHHHHHHhc-c
Confidence 367777788754 4444444 678888888999999999999999876 2233222 3333333 4
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.++++++|+.+.+||-++-...+.+++..
T Consensus 315 ~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 315 NVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred CceEEEecccchhceeeHHHHHHHHHHHH
Confidence 48899999999999999999888888754
No 385
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.62 E-value=5.2e-08 Score=81.64 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=95.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|..|+||||++.++..+.+. ...||++.+. ..+.+.+ +.+.+|+-.+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~-------------------- 68 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQ-------------------- 68 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSS--------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEecccc--------------------
Confidence 4789999999999999999999887654 4777876443 3445544 45677754431
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..+ +++++.||++++++++|.|.+... +-......+..-
T Consensus 69 ----~~~------------------------------------~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~~~L~~l 107 (175)
T PF00025_consen 69 ----ESF------------------------------------RPLWKSYFQNADGIIFVVDSSDPE-RLQEAKEELKEL 107 (175)
T ss_dssp ----GGG------------------------------------GGGGGGGHTTESEEEEEEETTGGG-GHHHHHHHHHHH
T ss_pred ----ccc------------------------------------cccceeeccccceeEEEEecccce-eecccccchhhh
Confidence 111 567889999999999999866422 222222222221
Q ss_pred ceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc-cCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY-PQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+. .......|+....||.|.+..... .++.+..+. ..+ ......++..++...+...+.- .|+.+
T Consensus 108 l~---~~~~~~~piLIl~NK~D~~~~~~~-~~i~~~l~l--------~~l~~~~~~~v~~~sa~~g~Gv~e~l-~WL~~ 173 (175)
T PF00025_consen 108 LN---DPELKDIPILILANKQDLPDAMSE-EEIKEYLGL--------EKLKNKRPWSVFSCSAKTGEGVDEGL-EWLIE 173 (175)
T ss_dssp HT---SGGGTTSEEEEEEESTTSTTSSTH-HHHHHHTTG--------GGTTSSSCEEEEEEBTTTTBTHHHHH-HHHHH
T ss_pred cc---hhhcccceEEEEeccccccCcchh-hHHHhhhhh--------hhcccCCceEEEeeeccCCcCHHHHH-HHHHh
Confidence 11 122246778888999887532211 111111111 112 2455666666777777777766 66643
No 386
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.61 E-value=6.1e-08 Score=85.62 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=39.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
...++|+++|.+|+|||||+|++++..... .+.++...........++ ..+.+|||||.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl 89 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGL 89 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCc
Confidence 346899999999999999999999876422 222222111111222333 56789999998
No 387
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.61 E-value=4.5e-10 Score=98.52 Aligned_cols=122 Identities=19% Similarity=0.146 Sum_probs=60.7
Q ss_pred cccccccccccccccccCccc--------cCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSY--------PQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~--------~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+-++|||||.++...+.... ...-+++++.|.. ++..|-... ++.......-+.|.|.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~--L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSL--LLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHH--HHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHH--HHHHHHHhhCCCCEEEeeeccCcc
Confidence 567999999998654443332 3344667777765 445454432 222222222489999999999998
Q ss_pred CCchhhHHhhhCCCCCc--------CHHHHHHHHH---HhCCe-eEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 260 EDAPTLEKLAKNKQKPI--------SFEQGEKLAK---ELKAV-KYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 260 ~~~~~~~~~~~~~~~~v--------~~~~~~~~~~---~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+. ....++....... ...-.+++++ .++.. .++.+|+++++++++++..+-+++
T Consensus 170 ~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 733 1111100000000 1111222232 33445 799999999999999999876553
No 388
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.60 E-value=1.5e-07 Score=86.28 Aligned_cols=127 Identities=15% Similarity=0.193 Sum_probs=80.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh----------hhHhhhhhcchhhhhhc--CCCCcEEEEEeccCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----------SSFENVKEKWVPEITHH--CQKTPFLLVGTQIDL 258 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl 258 (330)
.+.+||++||...+..|..++.+++++++|.|+++- ..+++.. ..+..+... ..++|++|++||.|+
T Consensus 162 ~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl-~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 162 KFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL-NLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred EEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH-HHHHHHHhCccccCCCEEEEccChHH
Confidence 345566666677777777777778888888777752 2333333 222232222 268999999999998
Q ss_pred CCCchhhH---HhhhCCCC-CcCHHHHHHHHHHh---------CCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 259 REDAPTLE---KLAKNKQK-PISFEQGEKLAKEL---------KAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 259 ~~~~~~~~---~~~~~~~~-~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
..+.-... ..-++... ..+.+.+..|.... ..+....++|.+..++..+|..+...|+..
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 76432221 11122222 34566666665541 224567899999999999999998888753
No 389
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.4e-07 Score=86.68 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=54.7
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhh---hhc-chhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCc
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEK-WVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPI 276 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~---~~~-~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v 276 (330)
..|-..+-..+.+||+.|||.|+.+.+.-.-. -|. -+..+.+...---+|++.||.|+.+-++.+= +.
T Consensus 96 rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf--------~e 167 (428)
T COG5256 96 RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERF--------EE 167 (428)
T ss_pred HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHH--------HH
Confidence 44444445567788999999998876421111 000 0111222222456899999999986311100 01
Q ss_pred CHHHHHHHHHHhCC----eeEEEEeeccCCCHHH
Q psy9997 277 SFEQGEKLAKELKA----VKYVECSALTQKGLKN 306 (330)
Q Consensus 277 ~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~ 306 (330)
-..+...+.+..|- ++|+.+||-.|.|+.+
T Consensus 168 i~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 168 IVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 11233345554442 5699999999999865
No 390
>KOG3886|consensus
Probab=98.59 E-value=7.3e-08 Score=81.61 Aligned_cols=104 Identities=12% Similarity=0.229 Sum_probs=66.3
Q ss_pred ccccCccccCCCEEEEEEEcCChhhHhhhhhcc---hhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 204 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 204 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
.......+++.++.+.+||+...+-..++. .+ ++.+.++.+...+.+..+|.|+..... +....++
T Consensus 72 ~~q~d~iF~nV~vli~vFDves~e~~~D~~-~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~----------r~~if~~ 140 (295)
T KOG3886|consen 72 SSQEDNIFRNVQVLIYVFDVESREMEKDFH-YYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA----------RELIFQR 140 (295)
T ss_pred hhcchhhheeheeeeeeeeccchhhhhhHH-HHHHHHHHHHhcCCcceEEEEEeechhcccch----------HHHHHHH
Confidence 346667889999999999999876666554 33 455666778889999999999986422 2222222
Q ss_pred ----HHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 ----GEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ----~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+.+.+..+ +.++.+|- ..+.+-+++..+...++...+
T Consensus 141 r~~~l~~~s~~~~-~~~f~Tsi-wDetl~KAWS~iv~~lipn~~ 182 (295)
T KOG3886|consen 141 RKEDLRRLSRPLE-CKCFPTSI-WDETLYKAWSSIVYNLIPNVS 182 (295)
T ss_pred HHHHHHHhccccc-ccccccch-hhHHHHHHHHHHHHhhCCChH
Confidence 222222222 45666554 346666666666666665443
No 391
>PRK12289 GTPase RsgA; Reviewed
Probab=98.58 E-value=1.4e-07 Score=87.28 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=68.6
Q ss_pred cccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
.+-+.+.+..+.++|.+++|+|++++. +...+. .|+..+. ..++|+++|+||+|+... .. .+
T Consensus 77 pR~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~--~~~ip~ILVlNK~DLv~~------------~~--~~ 139 (352)
T PRK12289 77 PRKTELDRPPVANADQILLVFALAEPPLDPWQLS-RFLVKAE--STGLEIVLCLNKADLVSP------------TE--QQ 139 (352)
T ss_pred ccccceechhhhcCCEEEEEEECCCCCCCHHHHH-HHHHHHH--HCCCCEEEEEEchhcCCh------------HH--HH
Confidence 445556666789999999999999876 343455 6776553 358999999999999643 11 11
Q ss_pred HHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 280 QGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 280 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
......+.++ +.++.+||+++.|++++++.+...
T Consensus 140 ~~~~~~~~~g-~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 140 QWQDRLQQWG-YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred HHHHHHHhcC-CeEEEEEcCCCCCHHHHhhhhccc
Confidence 2222334555 689999999999999999987543
No 392
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.57 E-value=1.5e-07 Score=78.17 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=40.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+.++....+. .+.+|.+.+. ..+..++ ..+.+||+++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G 67 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGG 67 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCC
Confidence 5789999999999999999999987664 4667765332 2344444 4567787665
No 393
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.57 E-value=2.3e-08 Score=85.11 Aligned_cols=122 Identities=12% Similarity=0.013 Sum_probs=76.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHh--CCCCCCCC--CCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT--NKFPSEYV--PTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~--~~f~~~~~--~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
-+|+++|+++||||||+.+|+. +.|...+. +++.+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~---------------------------------------- 42 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDS---------------------------------------- 42 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCccccccccc----------------------------------------
Confidence 4799999999999999999997 66655432 111000
Q ss_pred EEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 80 LISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
....++.+..+ .....++.....+.+|||+|+++|......+++++|++++|||...... ...
T Consensus 43 ----------~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~------~~~ 106 (194)
T cd01891 43 ----------NDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM------PQT 106 (194)
T ss_pred ----------chhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc------HHH
Confidence 00011111111 1223344456788999999999999999999999999999998654210 011
Q ss_pred CCcceeeeccCCCcccccccceeecc
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
..|+... .....|+.+++||.|+
T Consensus 107 ~~~~~~~---~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 107 RFVLKKA---LELGLKPIVVINKIDR 129 (194)
T ss_pred HHHHHHH---HHcCCCEEEEEECCCC
Confidence 1111111 1134567788999987
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.54 E-value=2.3e-07 Score=83.94 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=66.9
Q ss_pred CccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
...+.++|.+++|+|++++. ++..+. .|+..+.. .++|+++|+||+|+..+ . .......+..
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ld-r~L~~~~~--~~ip~iIVlNK~DL~~~------------~--~~~~~~~~~~ 135 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLD-RYLVAAEA--AGIEPVIVLTKADLLDD------------E--EEELELVEAL 135 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHH-HHHHHHHH--cCCCEEEEEEHHHCCCh------------H--HHHHHHHHHH
Confidence 34588999999999999998 888887 78876654 47999999999999643 0 1112233334
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
..+ .+++.+||+++.|+++++..+..
T Consensus 136 ~~g-~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 136 ALG-YPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred hCC-CeEEEEECCCCccHHHHHhhhcc
Confidence 455 68999999999999999887653
No 395
>PTZ00258 GTP-binding protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=88.19 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=38.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCc---------------eeeeeeeecCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQ 121 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~ 121 (330)
...++|.++|.+|||||||++++++.+. ..+|+.|..+...-.+.+.+. ...+.+.|+||.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 4567999999999999999999987653 234443332222222222211 234788888886
No 396
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.53 E-value=2.5e-08 Score=80.20 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv 36 (330)
.||+++|++|||||||++||..+.+ .+.+|+
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~ 31 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEI--LYKKTQ 31 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCcc--ccccce
Confidence 3899999999999999999998766 345554
No 397
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=3.9e-07 Score=80.86 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=83.1
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCC----hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
....++.|++|+|..-+..-....-.|+.+||.+.+. |++-+.+. -++. ..-..+|+|-||+|+......
T Consensus 85 ~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~--AleI----igik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 85 VRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM--ALEI----IGIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH--HHhh----hccceEEEEecccceecHHHH
Confidence 4467899999999876665555555699999999885 34444432 1111 124579999999999875332
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELK--AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
...+++..+|.+--. ..+++.+||..+.|++.+++++...+-.+.+.
T Consensus 159 ----------lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 159 ----------LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred ----------HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 235566667766321 25899999999999999999999888766554
No 398
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=1.7e-07 Score=76.83 Aligned_cols=93 Identities=19% Similarity=0.114 Sum_probs=62.0
Q ss_pred cccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 205 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 205 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
.+.....+++|++++|+|++++....+. .+...+. ..+.|+++|+||+|+... .. .+....+
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~--~~~~p~iiv~NK~Dl~~~------------~~--~~~~~~~ 65 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVL--ELGKKLLIVLNKADLVPK------------EV--LEKWKSI 65 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHH--hCCCcEEEEEEhHHhCCH------------HH--HHHHHHH
Confidence 3445566789999999999876543332 1222222 136899999999999532 11 1111123
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.+..+ .+++.+||+++.|++++++.+...+-
T Consensus 66 ~~~~~-~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 66 KESEG-IPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred HHhCC-CcEEEEEccccccHHHHHHHHHHHHh
Confidence 33444 57899999999999999999887663
No 399
>PTZ00099 rab6; Provisional
Probab=98.51 E-value=1.1e-07 Score=79.74 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=71.5
Q ss_pred hCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEE
Q psy9997 25 TNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT 103 (330)
Q Consensus 25 ~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~ 103 (330)
.+.|.++|.||++..+ .+.+.+++..+.+.+||++|..++
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~--------------------------------------- 42 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERF--------------------------------------- 42 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHh---------------------------------------
Confidence 3678899999998665 667899999999999999872222
Q ss_pred EEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeec
Q psy9997 104 VMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITN 183 (330)
Q Consensus 104 ~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 183 (330)
..+++.||++||++++|||.+. ..+ ...+..|+..+.....+..++.++|+|.|
T Consensus 43 ---------------------~~~~~~~~~~ad~~ilv~D~t~--~~s---f~~~~~w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 43 ---------------------RSLIPSYIRDSAAAIVVYDITN--RQS---FENTTKWIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred ---------------------hhccHHHhCCCcEEEEEEECCC--HHH---HHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 3456778999999999998443 111 22345566655444446778899999999
Q ss_pred cCC
Q psy9997 184 INP 186 (330)
Q Consensus 184 ~~~ 186 (330)
+..
T Consensus 97 L~~ 99 (176)
T PTZ00099 97 LGD 99 (176)
T ss_pred ccc
Confidence 854
No 400
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.49 E-value=3.1e-07 Score=87.79 Aligned_cols=57 Identities=23% Similarity=0.174 Sum_probs=45.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCC--CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~--f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++++... +...+.+|..+.....+.+++.++ .+||+++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v--~l~DTaG 260 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILI--KLLDTAG 260 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEE--EEeeCCC
Confidence 35899999999999999999999864 456666666666667778877654 7999987
No 401
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.47 E-value=7.1e-08 Score=81.97 Aligned_cols=41 Identities=85% Similarity=1.463 Sum_probs=37.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
|+.+||+++|+.|||||||+.||..+.|.+.|.||+++.+.
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~ 41 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS 41 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE
Confidence 56789999999999999999999999999999999976653
No 402
>PRK00007 elongation factor G; Reviewed
Probab=98.46 E-value=2.1e-07 Score=94.09 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=43.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+.||+|...|.......+..+|++++|.|......-+... .+..+.. .+.|.|++.||+|+..+
T Consensus 77 ~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~~--~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 77 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQADK--YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHHH--cCCCEEEEEECCCCCCC
Confidence 344566665655444455677899999999987654444333 2223333 36899999999999754
No 403
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.46 E-value=1.9e-07 Score=80.71 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=57.3
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCC---CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQ---KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
....+++++|...+ +-+-.+. ..+..+.+.+. -.-+|||.+..|...+....+-+ ..-..+..+.+.+.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l-----~~~~~~~l~~li~~ 152 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYL-----KKESNEALQELIEK 152 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHH-----HHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHH-----hccCchhHhHHhhh
Confidence 45678999999987 2222221 23333333332 23589999999887653211100 00012345667777
Q ss_pred hCCeeEEEEeec------cCCCHHHHHHHHHHHhcCCC
Q psy9997 288 LKAVKYVECSAL------TQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 288 ~~~~~~~e~Sa~------~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+. .|+....+ ....+.++++.+-.++.++.
T Consensus 153 c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 153 CGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 763 78777766 34568888888777776654
No 404
>PRK12288 GTPase RsgA; Reviewed
Probab=98.46 E-value=5.1e-07 Score=83.49 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=67.2
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
...++|.+++||+++...++..+. .|+..+.. .++|.++|+||+|+..... + ...++.....+..+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~----------~-~~~~~~~~~y~~~g 182 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEG----------R-AFVNEQLDIYRNIG 182 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHH----------H-HHHHHHHHHHHhCC
Confidence 457899999999999889999988 78765543 4789999999999975310 0 01122223334555
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+++++||+++.|++++++.+...
T Consensus 183 -~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 183 -YRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred -CeEEEEeCCCCcCHHHHHHHHhhC
Confidence 689999999999999999988654
No 405
>KOG0070|consensus
Probab=98.45 E-value=1.8e-07 Score=76.75 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=85.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++++|++||--+.|||+++-++-.+++... .||++.+.- .+.+. .+.+.+||-.+.
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE-~v~yk--n~~f~vWDvGGq-------------------- 71 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE-TVEYK--NISFTVWDVGGQ-------------------- 71 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee-EEEEc--ceEEEEEecCCC--------------------
Confidence 578999999999999999999999888776 999975542 22222 677889975551
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ + +++++.||++.+++|+|.|+.... +-...+.++...
T Consensus 72 ----~k----~--------------------------------R~lW~~Y~~~t~~lIfVvDS~Dr~-Ri~eak~eL~~~ 110 (181)
T KOG0070|consen 72 ----EK----L--------------------------------RPLWKHYFQNTQGLIFVVDSSDRE-RIEEAKEELHRM 110 (181)
T ss_pred ----cc----c--------------------------------ccchhhhccCCcEEEEEEeCCcHH-HHHHHHHHHHHH
Confidence 11 1 778999999999999999866443 333355565555
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+.... ....|+...+||.|++
T Consensus 111 l~~~~---l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 111 LAEPE---LRNAPLLVFANKQDLP 131 (181)
T ss_pred HcCcc---cCCceEEEEechhhcc
Confidence 54443 5677888889999885
No 406
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.43 E-value=4.2e-07 Score=83.97 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=34.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceee---cceEEEEECCceeeeeeeecCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD---NYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
..+++|+|+|++|+|||||+|.+.+-.-.++-....|. ....+.+.....-.+.+||.||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~ 96 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGI 96 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--G
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCC
Confidence 35689999999999999999999763322222222222 22223334444457889999987
No 407
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.40 E-value=1.4e-07 Score=79.57 Aligned_cols=42 Identities=50% Similarity=0.828 Sum_probs=37.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV 102 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~ 102 (330)
...+||+++|++|||||||++||..+.|...|.||++..+..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~ 44 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA 44 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEE
Confidence 457899999999999999999999999999999999876643
No 408
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.40 E-value=4.4e-07 Score=79.17 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=46.0
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcE-EEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-HHH-H
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-LAK-E 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~ 287 (330)
.+.+|.++++.|.+........ .++..+... +.|. ++|.||+|+........ .+ .++.+. +.. .
T Consensus 101 ak~aDvVllviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~--------~~-~~~l~~~~~~~~ 167 (225)
T cd01882 101 AKVADLVLLLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLR--------KT-KKRLKHRFWTEV 167 (225)
T ss_pred HHhcCEEEEEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHH--------HH-HHHHHHHHHHhh
Confidence 4678999999998754433332 234444332 4674 55999999974311110 11 122222 332 2
Q ss_pred hCCeeEEEEeeccCCCH
Q psy9997 288 LKAVKYVECSALTQKGL 304 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v 304 (330)
....+++.+||++...+
T Consensus 168 ~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 168 YQGAKLFYLSGIVHGRY 184 (225)
T ss_pred CCCCcEEEEeeccCCCC
Confidence 23357999999988543
No 409
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.37 E-value=1.4e-07 Score=81.97 Aligned_cols=41 Identities=49% Similarity=0.892 Sum_probs=36.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT 103 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~ 103 (330)
++||+++|+.|||||||+++|..+.|.+.|.||++..|...
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~ 41 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTAS 41 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEE
Confidence 47999999999999999999999999999999998776543
No 410
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.37 E-value=7e-07 Score=73.77 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
+|+++|++|||||||+.++..+.+
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC
Confidence 799999999999999999998765
No 411
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.35 E-value=2.6e-06 Score=78.98 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=53.6
Q ss_pred CCCEEEEEE-EcC----ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 213 QTDVFLVCF-SVV----SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 213 ~~d~~ilv~-d~~----~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
.+++.++|. |-+ .++.+....+.|..++++. ++|+++|.||.|-..+ .+.+.+..+.++
T Consensus 144 hstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~ek 207 (492)
T TIGR02836 144 HSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEK 207 (492)
T ss_pred cCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHH
Confidence 678888887 553 2345666555788888775 8999999999995432 133445567677
Q ss_pred hCCeeEEEEeeccC--CCHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQ--KGLKNVFDEA 311 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~--~~v~~~f~~l 311 (330)
++ .+++.+|+..= ..+..+++.+
T Consensus 208 y~-vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 208 YD-VPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred hC-CceEEEEHHHcCHHHHHHHHHHH
Confidence 77 68777777542 2344444443
No 412
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.35 E-value=1.9e-07 Score=78.28 Aligned_cols=38 Identities=76% Similarity=1.468 Sum_probs=35.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
+|++++|+.|||||||+.||..+.|..+|.||+++.+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~ 39 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS 39 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE
Confidence 69999999999999999999999999999999977664
No 413
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.35 E-value=3.4e-07 Score=78.46 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=36.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC--CCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE--YVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++|+++|++|||||||++++..+.+... +.+|+. .....+.+++. ..+.+||+++
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~i~Dt~G 98 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD-PTTRRLRLPDG-REVLLTDTVG 98 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc-ceeEEEEecCC-ceEEEeCCCc
Confidence 37999999999999999999998764322 334442 22233334332 2566777776
No 414
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.35 E-value=9.9e-07 Score=81.63 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=89.2
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCCh----------hhHhhhhhcchhhhhh--cCCCCcEEEEEecc
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----------SSFENVKEKWVPEITH--HCQKTPFLLVGTQI 256 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~i~~--~~~~~piilV~nK~ 256 (330)
.+.+.+||++||...+..|..++.+++++++|.|+++- ..+++.. ..+..+.. ...++|++|++||.
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl-~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL-NLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH-HHHHHHHcCccccCCcEEEEEecH
Confidence 45678999999999999999999999999999999862 2344444 23333332 23689999999999
Q ss_pred CCCCCchhhH---HhhhCCCCCcCHHHHHHHHHHh----------CCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 257 DLREDAPTLE---KLAKNKQKPISFEQGEKLAKEL----------KAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 257 Dl~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
|+..+.-... ..-++.....+.+.+..|.... ..+..+.++|.+..++..+|..+...|+.
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 9986432111 1112333334566666655431 12456788999999999999998887764
No 415
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.34 E-value=9.9e-07 Score=80.82 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=62.9
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
..++.+.||+|...-... ....+|.++++.+....+....+. ..+.+ ..-++|.||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E----~aDIiVVNKaDl~~~~~a---- 212 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK----KGIME----LADLIVINKADGDNKTAA---- 212 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH----hhhhh----hhheEEeehhcccchhHH----
Confidence 345678888887633222 466799999995533333333322 11222 234899999999754210
Q ss_pred hhCCCCCcCHHHHHHHHHHh------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 269 AKNKQKPISFEQGEKLAKEL------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.-...+........ ...+++.+||+++.|++++++.+.+.+
T Consensus 213 ------~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 213 ------RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred ------HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 01111222222210 115799999999999999999987754
No 416
>KOG0092|consensus
Probab=98.33 E-value=4.8e-07 Score=74.59 Aligned_cols=55 Identities=16% Similarity=0.327 Sum_probs=26.9
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeecc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
++|.++|||+|+++|+||| ....++...++.|+.++..+.+|...+.++|||.|+
T Consensus 68 ~slapMYyRgA~AAivvYD-----it~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL 122 (200)
T KOG0092|consen 68 HSLAPMYYRGANAAIVVYD-----ITDEESFEKAKNWVKELQRQASPNIVIALVGNKADL 122 (200)
T ss_pred cccccceecCCcEEEEEEe-----cccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhh
Confidence 4455555555555555554 222333334444555554444455555555555555
No 417
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.33 E-value=2.4e-07 Score=77.59 Aligned_cols=38 Identities=100% Similarity=1.587 Sum_probs=34.8
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
+||+++|++|||||||+++|..+.|...|.||++..+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~ 39 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 39 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE
Confidence 69999999999999999999999999999999976554
No 418
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.31 E-value=3e-07 Score=80.44 Aligned_cols=40 Identities=45% Similarity=0.767 Sum_probs=36.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
..+||+++|++|||||||+++|..+.|.+.|.||++..|.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~ 51 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 51 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE
Confidence 4689999999999999999999999999999999977664
No 419
>KOG0073|consensus
Probab=98.30 E-value=7.4e-07 Score=71.51 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=75.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++++|+++|-.++|||+++.+|.... ++...||.+-..+ ++.-+.+++++||-.++..+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik---tl~~~~~~L~iwDvGGq~~l----------------- 73 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK---TLEYKGYTLNIWDVGGQKTL----------------- 73 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE---EEEecceEEEEEEcCCcchh-----------------
Confidence 47999999999999999999998766 5666777653332 23445677889964431111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++.+++||..+|+.|.|+|. .+.++--+...++..-
T Consensus 74 -------------------------------------------r~~W~nYfestdglIwvvDs-sD~~r~~e~~~~L~~l 109 (185)
T KOG0073|consen 74 -------------------------------------------RSYWKNYFESTDGLIWVVDS-SDRMRMQECKQELTEL 109 (185)
T ss_pred -------------------------------------------HHHHHHhhhccCeEEEEEEC-chHHHHHHHHHHHHHH
Confidence 66789999999999999996 3444444444444443
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+.+-. --..++....+|.|++
T Consensus 110 L~eer---laG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 110 LVEER---LAGAPLLVLANKQDLP 130 (185)
T ss_pred Hhhhh---hcCCceEEEEecCcCc
Confidence 33111 1124555666666664
No 420
>KOG0098|consensus
Probab=98.29 E-value=3.1e-07 Score=75.20 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=45.6
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 188 (330)
++++.+|||+|.++||||| ....+...++..|+.+..++..++..++++|||.|+...+
T Consensus 69 rsv~~syYr~a~GalLVyd-----it~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYD-----ITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHhccCcceEEEEE-----ccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 5667888888888888888 3333445688888888888888888888888888885433
No 421
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.29 E-value=2.8e-07 Score=76.88 Aligned_cols=39 Identities=33% Similarity=0.646 Sum_probs=34.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
.+||+++|+.|||||||+++|..+.|...+.||++..+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~ 40 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK 40 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE
Confidence 479999999999999999999999999888898865553
No 422
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.26 E-value=9e-07 Score=73.20 Aligned_cols=71 Identities=8% Similarity=-0.156 Sum_probs=42.1
Q ss_pred eeeeeeecCCCc----cccccCCCCCC---CCceEEEEeccccchhhhcccccccCCcceeeeccC--CCccccccccee
Q psy9997 111 YTLGLFDTAGQE----DYDRLRPLSYP---QTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEH--SPPMKLHTLGFI 181 (330)
Q Consensus 111 ~~l~i~Dt~g~~----~~~~l~~~~~~---~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ 181 (330)
..+.+|||||+. ....+...+++ .+|++++|+|..... .+...+..|...+.... ....|+.+++||
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~----~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 123 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD----DPVEDYKTIRNELELYNPELLEKPRIVVLNK 123 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC----CHHHHHHHHHHHHHHhCccccccccEEEEEc
Confidence 468899999963 22234444444 599999999855321 11223334443332221 235677889999
Q ss_pred eccC
Q psy9997 182 TNIN 185 (330)
Q Consensus 182 ~~~~ 185 (330)
.|+.
T Consensus 124 ~Dl~ 127 (170)
T cd01898 124 IDLL 127 (170)
T ss_pred hhcC
Confidence 9984
No 423
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.25 E-value=1.2e-06 Score=71.80 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=30.5
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
..+.+|||||+++|......+++++|++++|+|..
T Consensus 51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~ 85 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAAD 85 (164)
T ss_pred cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECC
Confidence 36889999999999877778899999999999853
No 424
>KOG0080|consensus
Probab=98.25 E-value=4.6e-07 Score=72.39 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=30.9
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeecc-CCCcccccccceeeccCCCc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~ 188 (330)
+.|+++|||+|.++|+|||.+.+ +....+.-|..++... ..++...+++|+|+|....+
T Consensus 74 RtLTpSyyRgaqGiIlVYDVT~R-----dtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R 133 (209)
T KOG0080|consen 74 RTLTPSYYRGAQGIILVYDVTSR-----DTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER 133 (209)
T ss_pred hccCHhHhccCceeEEEEEccch-----hhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc
Confidence 55666666666666666663322 2223344555555553 23444456666666654333
No 425
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.24 E-value=6e-07 Score=83.36 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=40.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+||+++|.++||||||+++++...+.. .+..|-.+...+.+.+.+. ..+.+|||+|
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G 246 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVG 246 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCc
Confidence 799999999999999999999876532 2322323555566666322 2567898887
No 426
>PTZ00369 Ras-like protein; Provisional
Probab=98.24 E-value=3.7e-07 Score=77.32 Aligned_cols=40 Identities=48% Similarity=0.755 Sum_probs=35.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
+.++||+++|++|||||||+++|..+.|...+.||++..+
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~ 42 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY 42 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE
Confidence 5679999999999999999999999999888888886554
No 427
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.23 E-value=1.9e-06 Score=79.53 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=22.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+++.++|.+|+|||||.+++++.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999876
No 428
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.23 E-value=5.1e-06 Score=67.38 Aligned_cols=55 Identities=31% Similarity=0.336 Sum_probs=37.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+||+++|++|+||||+++++....+ ...+.++..+........++ ..+.+||+++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG 58 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAG 58 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCC
Confidence 6899999999999999999997764 23334443343344444443 3467787776
No 429
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=4.1e-06 Score=68.78 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=58.2
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
.++++|.+++|.|+.++..-.+. .+...+.....+.|+++|.||+|+... .. ..+....+.+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~--~i~~~l~~~~~~~p~ilVlNKiDl~~~------------~~-~~~~~~~~~~~~~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCK--HVEEYLKKEKPHKHLIFVLNKCDLVPT------------WV-TARWVKILSKEYP 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCH--HHHHHHHhccCCCCEEEEEEchhcCCH------------HH-HHHHHHHHhcCCc
Confidence 35689999999999987433221 233333333345899999999999643 11 1122333333322
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
...+.+||+.+.|++++.+.+...+
T Consensus 70 -~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 70 -TIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred -EEEEEeeccccccHHHHHHHHHHHH
Confidence 2357899999999999999886543
No 430
>KOG0075|consensus
Probab=98.22 E-value=6e-07 Score=70.67 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=84.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.++.+.++|-..+|||++++..+.+.|.....||++.+..+ +....+.+.+||-.+.+++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rf----------------- 78 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRF----------------- 78 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccH-----------------
Confidence 46789999999999999999999999999999999876652 3344566778876652222
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
++++..|||+.++++.+.|... ..+-...+.+++..
T Consensus 79 -------------------------------------------rsmWerycR~v~aivY~VDaad-~~k~~~sr~EL~~L 114 (186)
T KOG0075|consen 79 -------------------------------------------RSMWERYCRGVSAIVYVVDAAD-PDKLEASRSELHDL 114 (186)
T ss_pred -------------------------------------------HHHHHHHhhcCcEEEEEeecCC-cccchhhHHHHHHH
Confidence 6678889999999999988654 22223333344333
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+. ...-...|....|+|.|++
T Consensus 115 L~---k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 115 LD---KPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred hc---chhhcCCcEEEecccccCc
Confidence 22 2233456777889999986
No 431
>KOG0394|consensus
Probab=98.21 E-value=2e-07 Score=76.24 Aligned_cols=45 Identities=31% Similarity=0.614 Sum_probs=38.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG 107 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~ 107 (330)
.+||+++|++|||||||+++|...+|...|..|+|..+. +.+.++
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd 54 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD 54 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc
Confidence 489999999999999999999999999999999987774 466665
No 432
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.21 E-value=5.1e-07 Score=76.11 Aligned_cols=38 Identities=32% Similarity=0.666 Sum_probs=34.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
+|++++|++|||||||++||..+.|.+.|.||++..+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~ 38 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFM 38 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE
Confidence 58999999999999999999999999999999876553
No 433
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.20 E-value=2.7e-06 Score=87.75 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+.||+|+..|.......++.+|++++|.|+...-...... .|.. +.. .++|+|++.||+|..
T Consensus 101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~-~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHH-HHH--CCCCEEEEEECCccc
Confidence 34555555776665666678899999999998664444433 2332 222 378999999999997
No 434
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.19 E-value=1.3e-06 Score=69.69 Aligned_cols=53 Identities=38% Similarity=0.557 Sum_probs=42.5
Q ss_pred EEcCCCCChhHHHHHHHhCCC-CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 8 VVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f-~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
++|.+|+|||||++++..... ...+.+|..+.+............+.+|++.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g 54 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAG 54 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCC
Confidence 589999999999999998887 66777777555566667777788888887765
No 435
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.19 E-value=7e-07 Score=74.24 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=95.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+|++++|++|||||||++||.++.|. ..|.||++..+. ..+.+++..+.+.+||++|++.+..++..||+++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4589999999999999999999999998 899999988875 47888898899999999999999999999999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+|||.+.. .++ ..+..|+..... ....|+..++||.|+.
T Consensus 83 lv~d~~~~--~s~---~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 83 LVYDSSDP--KSF---SYCAEVYKKYFM--LGEIPCLFVAAKADLD 121 (169)
T ss_pred EEEeCCCH--HHH---HHHHHHHHHhcc--CCCCeEEEEEEccccc
Confidence 99985432 111 223344432211 2357899999999985
No 436
>KOG0078|consensus
Probab=98.18 E-value=1.3e-06 Score=73.20 Aligned_cols=48 Identities=29% Similarity=0.650 Sum_probs=40.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGG 108 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~ 108 (330)
..-+|++++|+++|||||++.||..+.|...+..|+|..|. +++.+++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g 58 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG 58 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC
Confidence 34689999999999999999999999999999999988884 4777765
No 437
>KOG0461|consensus
Probab=98.18 E-value=7.9e-06 Score=73.35 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=76.3
Q ss_pred CCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh
Q psy9997 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 185 ~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~ 264 (330)
+.+.++.+.+.|++|+...-...--...-.|..++|.|+....--+......+-++. ....++|.||+|+..+..
T Consensus 65 pq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~q- 139 (522)
T KOG0461|consen 65 PQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQ- 139 (522)
T ss_pred CccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchh-
Confidence 445566777888888866433222223345778999999743222222111222221 356789999999987632
Q ss_pred hHHhhhCCCCCcCHHH-HHHHHHH------hCCeeEEEEeeccC----CCHHHHHHHHHHHhcCCCCCC
Q psy9997 265 LEKLAKNKQKPISFEQ-GEKLAKE------LKAVKYVECSALTQ----KGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~-~~~~~~~------~~~~~~~e~Sa~~~----~~v~~~f~~l~~~i~~~~~~~ 322 (330)
|.-..+. +....+- .+..|++++||+.| .++.++.+.+-.++.++.+.+
T Consensus 140 ---------r~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 140 ---------RASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred ---------hhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 3222222 2222222 13378999999999 789999999999999887765
No 438
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.17 E-value=7.9e-07 Score=74.33 Aligned_cols=37 Identities=92% Similarity=1.557 Sum_probs=33.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
+|++++|++|||||||+.+|..+.|...|.||+++.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~ 38 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 38 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee
Confidence 6999999999999999999999999999999876543
No 439
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.17 E-value=2.2e-06 Score=69.76 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=36.6
Q ss_pred EEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCC
Q psy9997 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
++|++|||||||++++....+...+.++. .+.....+.+++ ..+.+||+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG 52 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPG 52 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCC
Confidence 58999999999999999886554444433 334445566665 3678899887
No 440
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.17 E-value=1.5e-06 Score=88.43 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~ 260 (330)
+.+.||+|+..|.......++.+|++++|.|......-+... .|.. ... .+.|.|++.||+|...
T Consensus 89 i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~-~~~--~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 89 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQ-ALR--ERVKPVLFINKVDRLI 153 (731)
T ss_pred EEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHH-HHH--cCCCeEEEEECchhhc
Confidence 345677777777666666788899999999987653333322 2332 222 2568899999999864
No 441
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.12 E-value=5.1e-06 Score=79.87 Aligned_cols=56 Identities=25% Similarity=0.278 Sum_probs=44.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|.++||||||+++++.+.. ...+..|..+.....+.+++.+ +.+||+++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G 272 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAG 272 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCC
Confidence 57999999999999999999998763 4555666566666777777654 57899887
No 442
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.10 E-value=7.2e-06 Score=68.27 Aligned_cols=80 Identities=23% Similarity=0.130 Sum_probs=52.8
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-CCeeEE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-KAVKYV 294 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ 294 (330)
.-|.|.|++.-+. ...+-.+.+ -..=++|.||.|+.+. -..+.+....-+++. ...+++
T Consensus 120 ~~v~VidvteGe~---~P~K~gP~i-----~~aDllVInK~DLa~~------------v~~dlevm~~da~~~np~~~ii 179 (202)
T COG0378 120 LRVVVIDVTEGED---IPRKGGPGI-----FKADLLVINKTDLAPY------------VGADLEVMARDAKEVNPEAPII 179 (202)
T ss_pred eEEEEEECCCCCC---CcccCCCce-----eEeeEEEEehHHhHHH------------hCccHHHHHHHHHHhCCCCCEE
Confidence 6677778775331 110111111 1146899999999876 445556555555544 346899
Q ss_pred EEeeccCCCHHHHHHHHHHHh
Q psy9997 295 ECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i 315 (330)
++|+++|.|++++++++...+
T Consensus 180 ~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 180 FTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEeCCCCcCHHHHHHHHHhhc
Confidence 999999999999999887654
No 443
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.10 E-value=7.2e-06 Score=66.05 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=51.3
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK 289 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 289 (330)
.++++|++++|+|+.++.+..+. .+.+.+.....+.|+++|+||+|+..+ . ...+..++.+..+
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~------------~--~~~~~~~~~~~~~ 71 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTE------------E--QRKAWAEYFKKEG 71 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCH------------H--HHHHHHHHHHhcC
Confidence 46789999999999988765532 122222222257899999999999643 1 1223344455555
Q ss_pred CeeEEEEeeccCCC
Q psy9997 290 AVKYVECSALTQKG 303 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~ 303 (330)
..++++||.++.+
T Consensus 72 -~~ii~iSa~~~~~ 84 (141)
T cd01857 72 -IVVVFFSALKENA 84 (141)
T ss_pred -CeEEEEEecCCCc
Confidence 5799999998764
No 444
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.10 E-value=1.1e-06 Score=72.22 Aligned_cols=37 Identities=38% Similarity=0.677 Sum_probs=32.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN 99 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~ 99 (330)
++||+++|++|+|||||++++..+.|...+.||.++.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~ 37 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDF 37 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhhe
Confidence 4799999999999999999999999988888887543
No 445
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.10 E-value=1.2e-06 Score=72.53 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=45.1
Q ss_pred ccccccccccccccc----ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEecc
Q psy9997 189 VRDRSLFDTAGQEDY----DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQI 256 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~ 256 (330)
...+.+.|+||-... ..+...++..+|++++|.+.+...+-.+.. .+....... ...+++|.||.
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence 346789999998652 244566779999999999999866655554 444444443 34499999985
No 446
>KOG1486|consensus
Probab=98.09 E-value=2.5e-05 Score=67.36 Aligned_cols=217 Identities=17% Similarity=0.154 Sum_probs=115.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCc------cc-cccCCCCCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE------DY-DRLRPLSYPQ 134 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~------~~-~~l~~~~~~~ 134 (330)
..+++++|-+.||||+|+..+....- ...|.-|.-....-.+..+ ...+++.|.||.= +- ..-.-+--|-
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~--ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYN--GANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEec--CceEEEecCcccccccccCCCCCceEEEEeec
Confidence 46899999999999999988876442 1222222211111123333 3467889999831 10 1111244678
Q ss_pred CceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc--cccccCcccc
Q psy9997 135 TDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED--YDRLRPLSYP 212 (330)
Q Consensus 135 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~--~~~~~~~~~~ 212 (330)
||.++.|.|...+-.+-..-.++++...-.+.. ..|+.-+ +.....+..++..+--|--.|. +.-++..-+.
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk-~~Pniy~-----k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~ 213 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNK-RKPNIYF-----KKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIH 213 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccC-CCCCeEE-----EeeccCCeEEeeeeccccccHHHHHHHHHHHeec
Confidence 999999998776654433333333333211111 1111111 0111111111111111111121 1222222233
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
+|+ +++=+-+..+.|-++ +..+..-+|++-|-||+|. ++.|++..+|++-+
T Consensus 214 Nae--vl~ReD~t~DdfIDv-------i~gnr~Y~~ClYvYnKID~-----------------vs~eevdrlAr~Pn--- 264 (364)
T KOG1486|consen 214 NAE--VLFREDCTVDDFIDV-------IEGNRVYIKCLYVYNKIDQ-----------------VSIEEVDRLARQPN--- 264 (364)
T ss_pred cce--EEEecCCChHHHHHH-------HhccceEEEEEEEeeccce-----------------ecHHHHHHHhcCCC---
Confidence 443 333322333444443 3344445799999999987 56788889999876
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 293 YVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
-+-+|+..+.|++.+++.+-..+-
T Consensus 265 svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 265 SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred cEEEEeccccCHHHHHHHHHHHhc
Confidence 366899999999999998877663
No 447
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.09 E-value=1.2e-05 Score=72.34 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=45.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC----------CCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE----------YVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~----------~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++|+++|++|+|||||+++++...+... +.+|+. ..+...+..++.++.+.+||+++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpG 72 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPG 72 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCC
Confidence 68999999999999999999998877554 345553 33455666678888999999887
No 448
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.08 E-value=1.3e-05 Score=65.66 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=54.9
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
|.+++|.|+.++.+..+. ++........+.|+++|.||+|+... .. ..+....+.+..+ ..++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~~~~~p~IiVlNK~Dl~~~------------~~-~~~~~~~~~~~~~-~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIKEKGKKLILVLNKADLVPK------------EV-LRKWLAYLRHSYP-TIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHhcCCCCEEEEEechhcCCH------------HH-HHHHHHHHHhhCC-ceEE
Confidence 688999999988766543 22211112247999999999999542 10 0111223333333 5689
Q ss_pred EEeeccCCCHHHHHHHHHHH
Q psy9997 295 ECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.+||++|.|++++.+.+...
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred EEeccCCcChhhHHHHHHHH
Confidence 99999999999999988764
No 449
>PTZ00416 elongation factor 2; Provisional
Probab=98.07 E-value=2.1e-06 Score=88.37 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+.+.||+|...|.......++.+|++++|.|....-.-+... .| ..+.. .++|+|+|.||+|+.
T Consensus 93 ~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~-~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VL-RQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HH-HHHHH--cCCCEEEEEEChhhh
Confidence 3567899999888776677789999999999988754433332 23 33333 368999999999997
No 450
>KOG0071|consensus
Probab=98.07 E-value=4.1e-06 Score=65.54 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=69.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
++++++++|--+.|||+++-.+..+.. ....||++.+. .++++ +.+.+++|+-.+..++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnv-etVty--kN~kfNvwdvGGqd~i----------------- 74 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKI----------------- 74 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeE-EEEEe--eeeEEeeeeccCchhh-----------------
Confidence 478999999999999999999887654 56677776333 23333 3567888965542222
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++++.||.+..++|+|.|...+ .+-.+.+.+++.-
T Consensus 75 -------------------------------------------RplWrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh~i 110 (180)
T KOG0071|consen 75 -------------------------------------------RPLWRHYYTGTQGLIFVVDSADR-DRIEEARNELHRI 110 (180)
T ss_pred -------------------------------------------hHHHHhhccCCceEEEEEeccch-hhHHHHHHHHHHH
Confidence 78899999999999999997766 5555555565554
Q ss_pred c
Q psy9997 162 F 162 (330)
Q Consensus 162 ~ 162 (330)
+
T Consensus 111 i 111 (180)
T KOG0071|consen 111 I 111 (180)
T ss_pred h
Confidence 3
No 451
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.07 E-value=5.1e-06 Score=68.45 Aligned_cols=56 Identities=16% Similarity=0.037 Sum_probs=37.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~ 60 (330)
.|+++|++|||||||++++..+.+...+.++..... ...+..+ +....+.+||+++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG 59 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPG 59 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCC
Confidence 489999999999999999999888766544432222 1223322 1345667777765
No 452
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.06 E-value=1.3e-05 Score=73.08 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=51.0
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH-HHHHHHHHH-h
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF-EQGEKLAKE-L 288 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~-~ 288 (330)
...+|.++++- .+.+-+++. .+...+ .+.|.++|.||+|+........ . .... .....+.+. .
T Consensus 145 ~~~aD~i~vv~---~~~~~~el~-~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~-~------~~~~~~~l~~l~~~~~ 209 (300)
T TIGR00750 145 ANMADTFVVVT---IPGTGDDLQ-GIKAGL----MEIADIYVVNKADGEGATNVTI-A------RLMLALALEEIRRRED 209 (300)
T ss_pred HHhhceEEEEe---cCCccHHHH-HHHHHH----hhhccEEEEEcccccchhHHHH-H------HHHHHHHHhhcccccc
Confidence 45577777773 233444444 233323 3578899999999975421000 0 0000 000111111 1
Q ss_pred C-CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 K-AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 ~-~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+ ..+++++||+++.|++++++++.+..
T Consensus 210 ~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 210 GWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred CCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1 13689999999999999999998763
No 453
>KOG0458|consensus
Probab=98.05 E-value=4.2e-05 Score=73.16 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=52.8
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc------CCCCcEEEEEeccCCCCCch-hhHHhhhCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH------CQKTPFLLVGTQIDLREDAP-TLEKLAKNKQ 273 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~------~~~~piilV~nK~Dl~~~~~-~~~~~~~~~~ 273 (330)
.-|....-.....||+++||.|++-.+ |+.=- ....+.+++ ..-.-+|++.||.|+..=++ ..+++
T Consensus 266 kdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gf-d~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eI----- 338 (603)
T KOG0458|consen 266 KDFIPNMISGASQADVAVLVVDASTGE-FESGF-DPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDRFEEI----- 338 (603)
T ss_pred cccchhhhccccccceEEEEEECCcch-hhhcc-CCCCchHHHHHHHHHcCcceEEEEeecccccCccHHHHHHH-----
Confidence 444444445566788999999887432 22211 011112222 12457899999999986321 11111
Q ss_pred CCcCHHHHHHHH-HHhC----CeeEEEEeeccCCCHHHH
Q psy9997 274 KPISFEQGEKLA-KELK----AVKYVECSALTQKGLKNV 307 (330)
Q Consensus 274 ~~v~~~~~~~~~-~~~~----~~~~~e~Sa~~~~~v~~~ 307 (330)
......|. +..| .+.|+.+|+..|+|+-..
T Consensus 339 ----k~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 339 ----KNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ----HHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 11233333 2222 146999999999998655
No 454
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.04 E-value=1.4e-05 Score=71.99 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=72.7
Q ss_pred cccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 189 VRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 189 ~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+..+.+-||||+|.|...+......||+.|+..|.- ....... .-+..|.....-.-+++..||.||..-++..=
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F-- 159 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF-- 159 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHHHH--
Confidence 456789999999999998888899999999999983 2222221 22222322223456899999999987532110
Q ss_pred hhCCCCCcCHHHHHHHHHHhCC--eeEEEEeeccCCCHHH
Q psy9997 269 AKNKQKPISFEQGEKLAKELKA--VKYVECSALTQKGLKN 306 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~ 306 (330)
..-.++-..|+.+++. ..++++||..|+||-.
T Consensus 160 ------~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 ------EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred ------HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 1123445677887764 3589999999999753
No 455
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.04 E-value=1e-05 Score=65.98 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=25.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
|...+|+++|..|+|||||+++++...+
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCce
Confidence 6789999999999999999999987654
No 456
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.02 E-value=2e-06 Score=73.67 Aligned_cols=118 Identities=22% Similarity=0.389 Sum_probs=98.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
+.|+++|+.|||||||++||..+.|.+.|.+|++..+ .+.+.+++..+.+++|||+|+++|+.+++.||+++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999999999998776 457889999999999999999999999999999999999999
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|.+. ..+ ...+..|...+.....+..++.++|||.|+..
T Consensus 81 Dvtd--~~S---f~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 81 DITK--KET---FDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred ECcC--HHH---HHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 8442 222 23345566655544556789999999999853
No 457
>KOG0079|consensus
Probab=98.02 E-value=6.6e-07 Score=70.47 Aligned_cols=47 Identities=28% Similarity=0.633 Sum_probs=38.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
+|.+++|++|||||||+.+|..+.|+..|..|+|. .+.+...|.+|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv-----------DfkirTv~i~G~ 55 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV-----------DFKIRTVDINGD 55 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeee-----------eEEEEEeecCCc
Confidence 57889999999999999999999998888777643 345666788876
No 458
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.01 E-value=1.8e-06 Score=76.32 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=31.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
+||+++|+.|||||||+++|+.+.|...|.||+++.+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~ 37 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFH 37 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhE
Confidence 4789999999999999999998888888888876443
No 459
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.01 E-value=1.1e-05 Score=67.19 Aligned_cols=87 Identities=18% Similarity=0.098 Sum_probs=58.3
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...+++||.+++++|++++....+. .++. ...+.|.++|.||+|+..+ .. .....++.+.
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~----~~~~k~~ilVlNK~Dl~~~------------~~--~~~~~~~~~~ 73 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEK----ILGNKPRIIVLNKADLADP------------KK--TKKWLKYFES 73 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCCh--hhHh----HhcCCCEEEEEehhhcCCh------------HH--HHHHHHHHHh
Confidence 4467789999999999876553322 1222 2235799999999999532 10 1111122222
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+ ..++.+||+++.|++++.+.+...+
T Consensus 74 ~~-~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 KG-EKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHH
Confidence 23 4689999999999999999988764
No 460
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.01 E-value=2.8e-06 Score=72.09 Aligned_cols=119 Identities=20% Similarity=0.247 Sum_probs=100.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|+.|||||||+++|..+.|...+.++++..+. ..+.+++..+.+++|||+|+++|+.+++.||+++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4589999999999999999999999999999999887774 578889999999999999999999999999999999999
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|||.. .......+..|+.++..+ .+..|+.++|||.|+..
T Consensus 85 VfD~t-----~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~~ 124 (189)
T cd04121 85 VYDIT-----NRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLAF 124 (189)
T ss_pred EEECc-----CHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccchh
Confidence 99832 222333455677766443 36789999999999953
No 461
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.99 E-value=2.7e-06 Score=73.89 Aligned_cols=41 Identities=34% Similarity=0.526 Sum_probs=36.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
.+..+||+++|++|||||||+++|..+.|...+.||++..+
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~ 50 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV 50 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeE
Confidence 36789999999999999999999999999988888886544
No 462
>PRK13796 GTPase YqeH; Provisional
Probab=97.99 E-value=2.2e-05 Score=73.41 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=58.5
Q ss_pred CEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH----HHHHHHhCC
Q psy9997 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG----EKLAKELKA 290 (330)
Q Consensus 215 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 290 (330)
+.+++|.|+.+.. ..|.+++.+...+.|+++|+||+|+... ....+++ ..+++..+.
T Consensus 71 ~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~-------------~~~~~~i~~~l~~~~k~~g~ 131 (365)
T PRK13796 71 ALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPK-------------SVKKNKVKNWLRQEAKELGL 131 (365)
T ss_pred cEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCC-------------ccCHHHHHHHHHHHHHhcCC
Confidence 4889999987633 2577777776668899999999999642 2223333 334555552
Q ss_pred --eeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 291 --VKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 291 --~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..++.+||+++.|++++++.+...
T Consensus 132 ~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 132 RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 158999999999999999998654
No 463
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.97 E-value=1.7e-05 Score=70.97 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=40.6
Q ss_pred CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 246 ~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..+-++|.||+|+... .....+...+..+.. ...+++++||++|+|++++.+++..+
T Consensus 230 ~~ADIVVLNKiDLl~~------------~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPY------------LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcc------------cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999653 112233344444333 34679999999999999999998663
No 464
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.96 E-value=2.1e-05 Score=68.96 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
.++++|+.|+||||+++.++...|.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~ 52 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFL 52 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCcc
Confidence 6899999999999999999986643
No 465
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.96 E-value=2.9e-06 Score=69.73 Aligned_cols=110 Identities=20% Similarity=0.253 Sum_probs=86.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+.+|..+.|...+.|+ +..+...+.+++..+.+.+|||+|++. ..|++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999999999998877666 445567888999999999999999964 457899999999997
Q ss_pred cccchhhhcccccccCCcceeeeccC-CCcccccccceeecc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEH-SPPMKLHTLGFITNI 184 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~ 184 (330)
... +.++ ..+..|+..+.... .+..|+.++|+|.|+
T Consensus 75 ~~~--~~sf---~~~~~~~~~i~~~~~~~~~piilvgnK~Dl 111 (158)
T cd04103 75 LEN--EASF---QTVYNLYHQLSSYRNISEIPLILVGTQDAI 111 (158)
T ss_pred CCC--HHHH---HHHHHHHHHHHHhcCCCCCCEEEEeeHHHh
Confidence 332 2222 23445666555443 356788999999887
No 466
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.95 E-value=7.3e-06 Score=73.72 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=39.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCC---C-------Cceeecc-eEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY---V-------PTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~---~-------~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+|+|.+|+|||||++.|++....... . .+..... ...+.-++..+.+.++||+|.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 589999999999999999999987653331 1 1111111 224455778899999999996
No 467
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.94 E-value=8.1e-06 Score=72.96 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=35.3
Q ss_pred EEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCc---------------eeeeeeeecCCC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQ 121 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~ 121 (330)
+.++|.+|+|||||.+++++.+. ..+|+.|.-+...-.+.+.+. ...+++.|+||.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl 72 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGL 72 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCc
Confidence 46899999999999999998764 233433332222222233221 234788888886
No 468
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.94 E-value=1.1e-05 Score=68.79 Aligned_cols=123 Identities=34% Similarity=0.542 Sum_probs=82.8
Q ss_pred eeeEEEEcCCCCChhHHHH-HHHhC-----CCCCCCCCCcc--cceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLI-SYTTN-----KFPSEYVPTVF--DNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAV 74 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~-~~~~~-----~f~~~~~~tv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~ 74 (330)
.+||+++||+|||||||+. ++..+ .|..+|.||++ +.|.....+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~--------------------------- 54 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVL--------------------------- 54 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeec---------------------------
Confidence 5899999999999999995 66544 46677889984 3332211100
Q ss_pred ceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccc
Q psy9997 75 GKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDW 154 (330)
Q Consensus 75 GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~ 154 (330)
....+.+++..+.+++|||+|++. .+++.||+++|++++|||... ..++
T Consensus 55 -------------------------~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~--~~Sf-- 103 (195)
T cd01873 55 -------------------------ERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS--PNSL-- 103 (195)
T ss_pred -------------------------cccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC--hhHH--
Confidence 001123456678899999999975 467889999999999998432 1122
Q ss_pred ccccC-CcceeeeccCCCcccccccceeeccC
Q psy9997 155 NRKLG-GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+. .|...+... .+..|+.++|+|.|+.
T Consensus 104 -~~~~~~w~~~i~~~-~~~~piilvgNK~DL~ 133 (195)
T cd01873 104 -RNVKTMWYPEIRHF-CPRVPVILVGCKLDLR 133 (195)
T ss_pred -HHHHHHHHHHHHHh-CCCCCEEEEEEchhcc
Confidence 2332 355544332 3567889999999984
No 469
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.93 E-value=3.9e-06 Score=67.65 Aligned_cols=53 Identities=26% Similarity=0.219 Sum_probs=37.2
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
+++++|.+|+|||||+|++.+...... ....+ ......+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998775321 11111 12233455544 5789999997
No 470
>KOG0087|consensus
Probab=97.91 E-value=7e-06 Score=68.79 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=48.4
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+++.++|||+|.++++|||-+. ......+.+|+.++..|..+..+++++|||.|+..
T Consensus 77 rAitSaYYrgAvGAllVYDITr-----~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITR-----RQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred ccccchhhcccceeEEEEechh-----HHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 7788999999999999999332 22234889999999999999999999999999954
No 471
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.90 E-value=1.2e-05 Score=78.78 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=37.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC-CCCCC--CCceeecceEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK-FPSEY--VPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+++|.+|+||||++|.+++.+ |.... ..|... .......++ ..+.++||||.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG--~~L~VIDTPGL 176 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQG--VKIRVIDTPGL 176 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECC--ceEEEEECCCC
Confidence 5789999999999999999999876 32221 122221 111222333 46889999998
No 472
>PRK04213 GTP-binding protein; Provisional
Probab=97.90 E-value=2.5e-05 Score=66.63 Aligned_cols=53 Identities=25% Similarity=0.162 Sum_probs=38.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||++++..+.+...+.|++.. ....+.+. .+.+||+++
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G 61 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPG 61 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCc
Confidence 579999999999999999999988877666664421 12222222 478898886
No 473
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.89 E-value=5.2e-06 Score=71.78 Aligned_cols=43 Identities=33% Similarity=0.537 Sum_probs=36.7
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
.+.+..+|++++|++|||||||+++++.+.+...|.||++..+
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~ 46 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEV 46 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 3456779999999999999999999999999888888886543
No 474
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.88 E-value=1.7e-05 Score=71.12 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=34.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+|+++|.+|||||||+++++...+. +....|..+........++ ..+.+||+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG 57 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPG 57 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcC
Confidence 6899999999999999999987653 2333343332222222222 3466777776
No 475
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.87 E-value=6.7e-06 Score=68.20 Aligned_cols=21 Identities=43% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEcCCCCChhHHHHHHHhCCC
Q psy9997 8 VVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 8 ~lGd~~vGKtsl~~~~~~~~f 28 (330)
++|++|||||||++++....+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999998754
No 476
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.84 E-value=3e-05 Score=76.64 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=40.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
+..+|+++|+.++|||||+.++....+...+.+.+.-.. ...+..++.. .+.+||+++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPG 144 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPG 144 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCC
Confidence 346899999999999999999998888776655442111 2334443321 567888887
No 477
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.84 E-value=3.9e-05 Score=65.02 Aligned_cols=56 Identities=18% Similarity=0.017 Sum_probs=39.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
..||+++|++|||||||+++++.+.|...+.++.+.... +........+.+||+++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~l~l~DtpG 79 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQL--INFFEVNDKLRLVDLPG 79 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeE--EEEEecCCeEEEeCCCC
Confidence 378999999999999999999988777777777653321 11111135677787775
No 478
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.82 E-value=4.1e-07 Score=71.06 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPS 90 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~ 90 (330)
+|++++|+.|+|||+|+.|+....|..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~ 27 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY 27 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc
Confidence 489999999999999999997776643
No 479
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.81 E-value=0.00015 Score=67.73 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=65.3
Q ss_pred cccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 195 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.||+|+..|--.-...+.-.|+++|+.|... |++-- .+... ...+.+-|+|.||+|...+.+.
T Consensus 73 vDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrF-----VlkKA--l~~gL~PIVVvNKiDrp~Arp~------- 138 (603)
T COG1217 73 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRF-----VLKKA--LALGLKPIVVINKIDRPDARPD------- 138 (603)
T ss_pred ecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhh-----hHHHH--HHcCCCcEEEEeCCCCCCCCHH-------
Confidence 3444445554444555667899999999864 22211 11111 1247788899999999876331
Q ss_pred CCCCcCHHHHHHHHHHhCC------eeEEEEeeccCC----------CHHHHHHHHHHHhcCCC
Q psy9997 272 KQKPISFEQGEKLAKELKA------VKYVECSALTQK----------GLKNVFDEAILAALEPP 319 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~------~~~~e~Sa~~~~----------~v~~~f~~l~~~i~~~~ 319 (330)
.-.+++..+.-.+++ +|++..||.+|. ++.-+|+.+++.+=.+.
T Consensus 139 ----~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 139 ----EVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred ----HHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 122344444444443 678999999885 57778888777665443
No 480
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.81 E-value=7.3e-05 Score=67.30 Aligned_cols=88 Identities=19% Similarity=0.141 Sum_probs=59.2
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...++.+|.+++|.|..++.+..+.. +...+ .+.|+++|.||+|+... . ...+....+ +.
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l----~~kp~IiVlNK~DL~~~------------~-~~~~~~~~~-~~ 75 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR----GNKPRLIVLNKADLADP------------A-VTKQWLKYF-EE 75 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH----CCCCEEEEEEccccCCH------------H-HHHHHHHHH-HH
Confidence 34577899999999998776544421 22222 36899999999999532 0 011111122 23
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.+ ..++.+||+++.|++++.+.+...+-
T Consensus 76 ~~-~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 76 KG-IKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 33 47899999999999999988877654
No 481
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.81 E-value=8.5e-06 Score=69.79 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=94.1
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-----CceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-----GEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
+||+++|++|||||||+++|.++.|.+.+.||++..+. +.+.++ +..+.++||||+|+++|..+++.||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999999999987664 345553 578999999999999999999999999999
Q ss_pred EEEEeccccchhhhcccccccCCcceeeec-------------------cCCCcccccccceeeccCC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFIST-------------------EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~g~~~~~~~ 186 (330)
+|+|||-+. ......+..|+.++.. ...+..|+.++|||.|+..
T Consensus 81 iIlVyDvtn-----~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTN-----RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcC-----hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999998332 1222344556555432 1235688999999999853
No 482
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.81 E-value=5e-05 Score=63.65 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=38.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeE-EEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~-~~~~~~~~~~~~~~~~~~ 60 (330)
..+|+++|++|+|||||++++....+...+.++.+..... ....++ .+.+||+++
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG 73 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPG 73 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCC
Confidence 5799999999999999999999887666666665543322 222222 466777665
No 483
>KOG0468|consensus
Probab=97.79 E-value=2.1e-05 Score=76.08 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=48.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
+.+.||+|+-.|.......++.+|++++++|+-....+...+ .+...-+ .+.|+++|.||.|..
T Consensus 199 ~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr--~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 199 MNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER--IIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred eeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH--HHHHHHh--ccCcEEEEEehhHHH
Confidence 456778887888777777888999999999998877776654 2211111 479999999999975
No 484
>PRK11058 GTPase HflX; Provisional
Probab=97.74 E-value=3.4e-05 Score=73.52 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=36.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+|+++|.++||||||++++....+.. +...+-.+.....+.+.+. ..+.+|||+|
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG 254 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVG 254 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCc
Confidence 489999999999999999999765432 2222222334445555432 1345788776
No 485
>KOG0091|consensus
Probab=97.73 E-value=3.9e-06 Score=67.33 Aligned_cols=82 Identities=32% Similarity=0.480 Sum_probs=75.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEE-CCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+++++|||+-||||||++.|+.++|.+-.+||+|.++ ..-+++ .|..++|++|||+|||+|++++.+||||+=+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 468999999999999999999999999999999998777 445555 588999999999999999999999999999999
Q ss_pred EEec
Q psy9997 140 VCFG 143 (330)
Q Consensus 140 ~v~~ 143 (330)
+|||
T Consensus 87 lvyd 90 (213)
T KOG0091|consen 87 LVYD 90 (213)
T ss_pred EEEe
Confidence 9986
No 486
>PRK15494 era GTPase Era; Provisional
Probab=97.73 E-value=9e-05 Score=68.68 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=40.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC---CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP---SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~---~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++.+.+. +.+.+|. +.....+..++. .+.+||++|
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr-~~~~~~~~~~~~--qi~~~DTpG 109 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR-SIITGIITLKDT--QVILYDTPG 109 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc-CcEEEEEEeCCe--EEEEEECCC
Confidence 469999999999999999999988774 3333442 333445555554 468999987
No 487
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.72 E-value=0.0001 Score=60.52 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=38.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|+|||||+++++...+. ....++..+.....+..++.. +.+||+++
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG 59 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAG 59 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCC
Confidence 4689999999999999999999887542 223333333333444555544 45787776
No 488
>PLN00023 GTP-binding protein; Provisional
Probab=97.71 E-value=1.4e-05 Score=72.50 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=41.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG 107 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~ 107 (330)
..+..+||+++|+.|||||||+++|..+.|...+.+|+|..+. +.+.++
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~ 66 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYG 66 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEEC
Confidence 3566799999999999999999999999999999999987663 445544
No 489
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.70 E-value=0.00012 Score=65.60 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=48.6
Q ss_pred EECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeecc
Q psy9997 105 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 105 ~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
.++.....+.+|||||++.|......+++.+|++++|+|...... .....++... .....|+..+.||.|.
T Consensus 65 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~------~~~~~i~~~~---~~~~~P~iivvNK~D~ 135 (267)
T cd04169 65 QFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE------PQTRKLFEVC---RLRGIPIITFINKLDR 135 (267)
T ss_pred EEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc------HHHHHHHHHH---HhcCCCEEEEEECCcc
Confidence 344556788999999999888777788999999999998653211 1111121111 1234567788999987
Q ss_pred CC
Q psy9997 185 NP 186 (330)
Q Consensus 185 ~~ 186 (330)
..
T Consensus 136 ~~ 137 (267)
T cd04169 136 EG 137 (267)
T ss_pred CC
Confidence 43
No 490
>KOG2486|consensus
Probab=97.69 E-value=6.5e-06 Score=71.93 Aligned_cols=63 Identities=14% Similarity=-0.029 Sum_probs=38.4
Q ss_pred ecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCC-ceeecceEEEEECCceeeeeeeecCCC
Q psy9997 57 FARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-TVFDNYAVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 57 ~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
|.....+.+++++|.+|||||||++.+...+-...... +-|. .+.+..-.....+.+.|.+|.
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~--Tq~in~f~v~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGK--TQAINHFHVGKSWYEVDLPGY 193 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcc--ceeeeeeeccceEEEEecCCc
Confidence 44556779999999999999999999987543221111 1111 122222223335566788884
No 491
>KOG1143|consensus
Probab=97.66 E-value=0.00061 Score=62.08 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=62.3
Q ss_pred ccccccccccccccccCcccc--CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCch------
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYP--QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAP------ 263 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~------ 263 (330)
..+.|.+|..+|....-..+. ..+..+|+...+.--..-.- ..+-.+. +-++|+.++.+|.|+....-
T Consensus 251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr--EHLgl~~--AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR--EHLGLIA--ALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH--HHHHHHH--HhCCCeEEEEEeeccccchhHHHHHH
Confidence 357888998888664443333 35667777766543222111 1122222 24899999999999986511
Q ss_pred hhHH-hhhC-----CCCCcCHHHHHHHHHHh---CCeeEEEEeeccCCCHHHH
Q psy9997 264 TLEK-LAKN-----KQKPISFEQGEKLAKEL---KAVKYVECSALTQKGLKNV 307 (330)
Q Consensus 264 ~~~~-~~~~-----~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~ 307 (330)
..++ ++.. ..+.-+.+++..-+++. +-.|+|-+|+.+|+|++-+
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1111 1111 11222344444333332 2368999999999997644
No 492
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.66 E-value=3.7e-05 Score=77.45 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=41.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc---cceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~---~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
..+|+++|+.++|||||+.++....+.....+.+. ..+...+..++....+.+||++|
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPG 304 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPG 304 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCc
Confidence 45899999999999999999998887665544331 22333334445567788888887
No 493
>KOG0086|consensus
Probab=97.65 E-value=1.6e-05 Score=63.10 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=48.8
Q ss_pred cccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccc
Q psy9997 125 DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDR 192 (330)
Q Consensus 125 ~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 192 (330)
++...+|||+|.++++||| ..+.+....+..|+.......++...+.+.|+|.|+...+.+++
T Consensus 72 RSVtRsYYRGAAGAlLVYD-----~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vtf 134 (214)
T KOG0086|consen 72 RSVTRSYYRGAAGALLVYD-----ITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTF 134 (214)
T ss_pred HHHHHHHhccccceEEEEe-----ccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhH
Confidence 5667788999999999988 33445566788888888888888888888898888866555544
No 494
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.63 E-value=0.0002 Score=64.84 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=58.9
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...++.+|++++|.|..++.+.++. ++... ..+.|+++|.||+|+... . . .+....+.+.
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~---~l~~~---~~~kp~iiVlNK~DL~~~------------~-~-~~~~~~~~~~ 78 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENP---MIDKI---IGNKPRLLILNKSDLADP------------E-V-TKKWIEYFEE 78 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCCh---hHHHH---hCCCCEEEEEEchhcCCH------------H-H-HHHHHHHHHH
Confidence 3457789999999999877654432 12222 236899999999999532 0 0 1112222233
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.+ ..++.+||+++.|++++.+.+...+-
T Consensus 79 ~~-~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QG-IKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 33 57899999999999999988776653
No 495
>KOG0410|consensus
Probab=97.63 E-value=5.2e-06 Score=73.99 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=56.7
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-C----CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-Q----KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA 285 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~----~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 285 (330)
...+|.++-|-|+++|.--+... ..+.-+.+.. + ...++=|-||+|..+.. +..
T Consensus 255 VaeadlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~e~------- 313 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------VEE------- 313 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------Ccc-------
Confidence 45689999999999998777766 5555555543 1 23467788888886531 111
Q ss_pred HHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 286 KELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 286 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+.+ .-+.+||++|.|++++..++-.++.
T Consensus 314 E~n---~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 EKN---LDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccC---CccccccccCccHHHHHHHHHHHhh
Confidence 112 2577999999999999987655543
No 496
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0002 Score=66.62 Aligned_cols=107 Identities=19% Similarity=0.109 Sum_probs=69.5
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcC---ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV---SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~---~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+.+.|++|.+.+-...-..+...|..+||.+.+ .+++-+.+. +.+.....-.++|.||+|..++...
T Consensus 52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~------iLdllgi~~giivltk~D~~d~~r~---- 121 (447)
T COG3276 52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL------ILDLLGIKNGIIVLTKADRVDEARI---- 121 (447)
T ss_pred eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH------HHHhcCCCceEEEEeccccccHHHH----
Confidence 344555555666554444566789999999996 455555554 3333344567999999999875211
Q ss_pred hhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 269 AKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+...++..+.-. +...+++.+|+++|.|++++.+.+....
T Consensus 122 ------e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 122 ------EQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ------HHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 111112222212 3345789999999999999999998887
No 497
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.62 E-value=0.00012 Score=74.60 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=39.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.-.|+++|+.++|||||+.++....+.....+.+. ......+.+++ ..+.+||+++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPG 346 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPG 346 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCC
Confidence 345799999999999999999988777655444331 11123444444 4567888887
No 498
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.61 E-value=5.6e-05 Score=69.20 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=39.3
Q ss_pred CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHH-HHHHHhcC
Q psy9997 245 QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD-EAILAALE 317 (330)
Q Consensus 245 ~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~-~l~~~i~~ 317 (330)
...|+|+|+||+|+... .. ....+........++.+||+.+.+++++.+ .++..+-+
T Consensus 213 t~KPvI~VlNK~Dl~~~------------~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 213 RSKPMVIAANKADIPDA------------EN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred cCCcEEEEEEHHHccCh------------HH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 35899999999997532 11 111222233335799999999999999998 47776644
No 499
>KOG3887|consensus
Probab=97.60 E-value=0.00035 Score=60.01 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=59.6
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhh---hcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT---HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~---~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
.++++-+.++|.|..+. -.+.+. .+..-+. .-.+++.+=+...|.|-..+....+ .+|.+-......++.
T Consensus 98 iF~~~gALifvIDaQdd-y~eala-~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie-----tqrdI~qr~~d~l~d 170 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDD-YMEALA-RLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE-----TQRDIHQRTNDELAD 170 (347)
T ss_pred HHhccCeEEEEEechHH-HHHHHH-HHHHHhhheeecCCCceEEEEEEeccCCchhhhhh-----hHHHHHHHhhHHHHh
Confidence 46778889999887542 222222 2222222 2347888889999999877643322 123333222333333
Q ss_pred Hh---CCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 287 EL---KAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 287 ~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.. -.+.|.-+ +.....+-|+|..++++++.+-+
T Consensus 171 ~gle~v~vsf~LT-SIyDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 171 AGLEKVQVSFYLT-SIYDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred hhhccceEEEEEe-eecchHHHHHHHHHHHHHhhhch
Confidence 21 11344444 45568899999999999986533
No 500
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.58 E-value=2.9e-05 Score=63.54 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=39.1
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEE-EEECCceeeeeeeecCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~g~ 121 (330)
...+++++|.+|+||||+++++.+.. ...+.++.+...... +..+ ..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKIT---SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcC---CCEEEEECcCC
Confidence 35688999999999999999998654 334455555443322 2222 26889999984
Done!