Query psy9997
Match_columns 330
No_of_seqs 205 out of 2133
Neff 9.0
Searched_HMMs 29240
Date Sat Aug 17 00:59:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.7E-37 1.9E-41 264.8 15.7 164 1-317 11-176 (216)
2 3q3j_B RHO-related GTP-binding 100.0 2.5E-32 8.6E-37 235.5 13.4 185 59-322 23-208 (214)
3 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.9E-32 2E-36 226.7 15.3 184 60-322 2-185 (186)
4 1m7b_A RND3/RHOE small GTP-bin 100.0 9E-32 3.1E-36 226.1 14.0 178 61-317 5-183 (184)
5 2atx_A Small GTP binding prote 100.0 2.2E-31 7.7E-36 225.4 15.8 179 61-318 16-194 (194)
6 3reg_A RHO-like small GTPase; 100.0 2.4E-31 8.2E-36 225.3 15.7 175 59-322 19-193 (194)
7 2j0v_A RAC-like GTP-binding pr 100.0 9.2E-32 3.2E-36 231.1 12.0 178 61-321 7-184 (212)
8 2q3h_A RAS homolog gene family 100.0 2.1E-31 7.2E-36 226.8 12.5 181 61-320 18-198 (201)
9 1gwn_A RHO-related GTP-binding 100.0 2.9E-31 9.8E-36 227.4 13.1 179 60-317 25-204 (205)
10 3oes_A GTPase rhebl1; small GT 100.0 1.6E-31 5.5E-36 227.9 11.3 178 60-330 21-201 (201)
11 2j1l_A RHO-related GTP-binding 100.0 5.4E-31 1.8E-35 227.1 13.0 181 61-320 32-212 (214)
12 4dsu_A GTPase KRAS, isoform 2B 100.0 6.5E-31 2.2E-35 220.9 13.1 176 61-330 2-189 (189)
13 2gco_A H9, RHO-related GTP-bin 100.0 2.4E-30 8.3E-35 220.6 16.4 178 61-317 23-200 (201)
14 3ihw_A Centg3; RAS, centaurin, 100.0 5.8E-31 2E-35 221.6 12.1 166 58-319 15-182 (184)
15 3c5c_A RAS-like protein 12; GD 100.0 4.4E-31 1.5E-35 222.7 11.4 165 59-317 17-186 (187)
16 3t5g_A GTP-binding protein RHE 100.0 1.4E-30 4.6E-35 217.9 14.1 169 61-322 4-174 (181)
17 4gzl_A RAS-related C3 botulinu 100.0 1E-30 3.5E-35 223.6 13.5 178 60-316 27-204 (204)
18 2fv8_A H6, RHO-related GTP-bin 100.0 2.4E-30 8.1E-35 221.7 15.7 183 60-321 22-204 (207)
19 2fu5_C RAS-related protein RAB 100.0 1.3E-30 4.3E-35 218.5 11.9 165 61-318 6-172 (183)
20 1c1y_A RAS-related protein RAP 100.0 1.3E-30 4.4E-35 214.6 11.6 164 61-316 1-166 (167)
21 2bov_A RAla, RAS-related prote 100.0 1.2E-30 3.9E-35 222.7 11.1 166 59-317 10-177 (206)
22 3bwd_D RAC-like GTP-binding pr 100.0 4E-31 1.4E-35 221.1 7.8 177 61-318 6-182 (182)
23 3kkq_A RAS-related protein M-R 100.0 3.6E-30 1.2E-34 215.6 12.4 166 59-317 14-182 (183)
24 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-29 9.5E-34 209.3 17.6 162 1-318 5-170 (178)
25 2g3y_A GTP-binding protein GEM 100.0 3.1E-29 1E-33 215.7 17.5 105 205-323 103-209 (211)
26 1u8z_A RAS-related protein RAL 100.0 3E-30 1E-34 212.2 10.6 164 61-317 2-167 (168)
27 2hup_A RAS-related protein RAB 100.0 3.1E-30 1E-34 220.2 10.3 168 61-320 27-196 (201)
28 1z08_A RAS-related protein RAB 100.0 1.1E-29 3.9E-34 209.7 12.9 164 61-317 4-169 (170)
29 2ew1_A RAS-related protein RAB 100.0 7.1E-30 2.4E-34 218.1 11.6 165 61-318 24-190 (201)
30 2gf0_A GTP-binding protein DI- 100.0 4.5E-30 1.5E-34 217.8 10.0 164 61-318 6-172 (199)
31 3cbq_A GTP-binding protein REM 100.0 8.1E-30 2.8E-34 216.6 11.2 168 60-320 20-191 (195)
32 2hxs_A RAB-26, RAS-related pro 100.0 4.7E-30 1.6E-34 213.7 9.5 168 60-320 3-176 (178)
33 2fn4_A P23, RAS-related protei 100.0 8.1E-30 2.8E-34 212.5 10.9 169 59-320 5-175 (181)
34 1r2q_A RAS-related protein RAB 100.0 1.6E-29 5.6E-34 208.4 12.5 165 60-317 3-169 (170)
35 2efe_B Small GTP-binding prote 100.0 3.1E-29 1.1E-33 209.3 13.8 168 59-319 8-177 (181)
36 2nzj_A GTP-binding protein REM 100.0 9.6E-30 3.3E-34 211.1 10.5 167 61-318 2-170 (175)
37 1z2a_A RAS-related protein RAB 100.0 1.6E-29 5.6E-34 208.1 11.7 164 61-317 3-167 (168)
38 3tw8_B RAS-related protein RAB 100.0 3.1E-29 1.1E-33 209.0 13.5 165 61-318 7-172 (181)
39 3q72_A GTP-binding protein RAD 100.0 1.7E-29 5.7E-34 208.0 11.7 161 63-317 2-164 (166)
40 2a5j_A RAS-related protein RAB 100.0 2.3E-29 8E-34 212.6 12.3 167 59-318 17-185 (191)
41 1z0j_A RAB-22, RAS-related pro 100.0 4.8E-29 1.7E-33 205.7 13.7 165 60-317 3-169 (170)
42 1z0f_A RAB14, member RAS oncog 100.0 3.1E-29 1.1E-33 208.6 12.0 164 61-317 13-178 (179)
43 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.8E-29 2E-33 206.9 13.5 166 60-318 4-175 (177)
44 2fg5_A RAB-22B, RAS-related pr 100.0 3.5E-29 1.2E-33 211.8 12.1 166 61-319 21-188 (192)
45 3cpj_B GTP-binding protein YPT 100.0 4.5E-29 1.5E-33 216.3 13.0 168 61-321 11-180 (223)
46 2g6b_A RAS-related protein RAB 100.0 9.4E-29 3.2E-33 206.2 14.3 166 61-319 8-176 (180)
47 3q85_A GTP-binding protein REM 100.0 2.7E-29 9.2E-34 207.4 10.8 163 63-318 2-168 (169)
48 1ek0_A Protein (GTP-binding pr 100.0 5.2E-28 1.8E-32 199.3 18.5 167 1-317 1-169 (170)
49 3tkl_A RAS-related protein RAB 100.0 4.9E-29 1.7E-33 210.9 12.5 168 61-321 14-183 (196)
50 2a9k_A RAS-related protein RAL 100.0 2.4E-29 8.3E-34 210.7 10.6 166 59-317 14-181 (187)
51 2gf9_A RAS-related protein RAB 100.0 5.4E-29 1.9E-33 209.9 12.7 164 61-317 20-185 (189)
52 2bme_A RAB4A, RAS-related prot 100.0 3.1E-29 1E-33 210.4 11.0 165 61-318 8-174 (186)
53 2y8e_A RAB-protein 6, GH09086P 100.0 5.2E-29 1.8E-33 207.2 12.2 166 59-317 10-177 (179)
54 1kao_A RAP2A; GTP-binding prot 100.0 2.1E-28 7.1E-33 201.0 15.5 163 1-316 1-165 (167)
55 2bcg_Y Protein YP2, GTP-bindin 100.0 8.8E-29 3E-33 211.5 13.8 163 61-316 6-170 (206)
56 3con_A GTPase NRAS; structural 100.0 7E-29 2.4E-33 209.2 12.9 168 58-319 16-185 (190)
57 3dz8_A RAS-related protein RAB 100.0 7.3E-30 2.5E-34 215.7 6.3 166 61-319 21-188 (191)
58 2yc2_C IFT27, small RAB-relate 100.0 6.2E-29 2.1E-33 212.1 11.9 165 61-318 18-193 (208)
59 1g16_A RAS-related protein SEC 100.0 5.9E-29 2E-33 205.2 11.2 163 62-318 2-166 (170)
60 2o52_A RAS-related protein RAB 100.0 2.7E-29 9.1E-34 214.1 9.3 171 55-318 17-189 (200)
61 2il1_A RAB12; G-protein, GDP, 100.0 2.9E-29 1E-33 212.4 9.1 165 61-317 24-190 (192)
62 2ce2_X GTPase HRAS; signaling 100.0 9.8E-29 3.3E-33 202.5 11.9 163 61-317 1-165 (166)
63 1x3s_A RAS-related protein RAB 100.0 1.4E-28 4.8E-33 207.8 13.1 166 60-319 12-180 (195)
64 1z06_A RAS-related protein RAB 100.0 6.3E-29 2.1E-33 209.5 10.9 165 60-317 17-188 (189)
65 1zbd_A Rabphilin-3A; G protein 100.0 1.2E-28 4.1E-33 210.0 12.7 163 62-317 7-171 (203)
66 2atv_A RERG, RAS-like estrogen 100.0 3.7E-29 1.3E-33 212.3 9.4 165 60-318 25-192 (196)
67 2erx_A GTP-binding protein DI- 100.0 6.8E-29 2.3E-33 205.0 10.2 163 62-317 2-167 (172)
68 2cjw_A GTP-binding protein GEM 100.0 1.2E-27 4.1E-32 202.7 17.8 100 206-319 73-174 (192)
69 2oil_A CATX-8, RAS-related pro 100.0 1.7E-28 5.7E-33 207.5 12.0 166 60-318 22-189 (193)
70 2p5s_A RAS and EF-hand domain 100.0 6.7E-29 2.3E-33 211.3 9.7 170 61-317 26-197 (199)
71 1ky3_A GTP-binding protein YPT 100.0 1.2E-28 4E-33 205.7 10.7 167 61-318 6-179 (182)
72 3bc1_A RAS-related protein RAB 100.0 8.2E-29 2.8E-33 208.7 9.7 167 60-319 8-187 (195)
73 3th5_A RAS-related C3 botulinu 99.9 2.4E-30 8.2E-35 221.0 0.0 177 61-316 28-204 (204)
74 2wkq_A NPH1-1, RAS-related C3 100.0 4.9E-28 1.7E-32 221.6 14.5 178 63-319 155-332 (332)
75 3t1o_A Gliding protein MGLA; G 100.0 1.5E-28 5.2E-33 207.8 10.3 104 201-319 85-194 (198)
76 1vg8_A RAS-related protein RAB 100.0 8.5E-28 2.9E-32 205.1 13.4 164 61-317 6-175 (207)
77 2f7s_A C25KG, RAS-related prot 99.9 2.2E-28 7.5E-33 210.7 9.1 164 61-317 23-199 (217)
78 3clv_A RAB5 protein, putative; 99.9 6.9E-28 2.4E-32 204.6 11.6 198 62-317 6-204 (208)
79 3l0i_B RAS-related protein RAB 99.9 4E-29 1.4E-33 212.7 3.7 165 61-318 31-197 (199)
80 4djt_A GTP-binding nuclear pro 99.9 9.9E-28 3.4E-32 206.7 11.5 169 60-321 8-179 (218)
81 3cph_A RAS-related protein SEC 99.9 1.8E-27 6.2E-32 204.0 12.5 163 61-317 18-182 (213)
82 3gj0_A GTP-binding nuclear pro 99.9 3.4E-28 1.2E-32 210.3 7.8 167 59-320 11-178 (221)
83 4bas_A ADP-ribosylation factor 99.9 1.5E-27 5E-32 202.3 8.8 170 59-321 13-193 (199)
84 1f6b_A SAR1; gtpases, N-termin 99.9 7E-27 2.4E-31 198.9 11.5 157 61-315 23-197 (198)
85 2zej_A Dardarin, leucine-rich 99.9 4.7E-28 1.6E-32 203.6 1.8 166 63-321 2-182 (184)
86 1m2o_B GTP-binding protein SAR 99.9 2.4E-26 8.1E-31 194.2 12.1 156 61-314 21-189 (190)
87 1zd9_A ADP-ribosylation factor 99.9 1.7E-27 5.7E-32 200.8 4.6 161 60-318 19-186 (188)
88 2h57_A ADP-ribosylation factor 99.9 3.9E-26 1.3E-30 192.5 12.4 160 61-317 19-187 (190)
89 1zj6_A ADP-ribosylation factor 99.9 2.5E-26 8.6E-31 193.2 10.9 162 61-321 14-182 (187)
90 1r8s_A ADP-ribosylation factor 99.9 2E-27 6.8E-32 195.1 3.8 155 64-317 1-162 (164)
91 3llu_A RAS-related GTP-binding 99.9 1E-26 3.5E-31 197.4 7.6 169 58-316 15-196 (196)
92 1upt_A ARL1, ADP-ribosylation 99.9 2.1E-26 7.2E-31 190.1 8.3 163 62-318 6-170 (171)
93 3c5h_A Glucocorticoid receptor 99.9 2.6E-26 8.7E-31 203.2 9.4 108 194-316 122-254 (255)
94 2h17_A ADP-ribosylation factor 99.9 4E-26 1.4E-30 191.0 9.6 157 59-314 17-180 (181)
95 1ksh_A ARF-like protein 2; sma 99.9 1E-25 3.5E-30 189.1 11.9 159 61-318 16-181 (186)
96 2b6h_A ADP-ribosylation factor 99.9 5E-27 1.7E-31 198.8 3.4 159 60-317 26-191 (192)
97 3r7w_B Gtpase2, GTP-binding pr 99.9 1.5E-26 5.3E-31 208.9 6.6 105 207-319 66-176 (331)
98 1fzq_A ADP-ribosylation factor 99.9 4E-26 1.4E-30 191.3 7.8 159 61-318 14-179 (181)
99 4dcu_A GTP-binding protein ENG 99.9 2E-26 6.7E-31 220.4 6.1 168 63-317 195-369 (456)
100 2f9l_A RAB11B, member RAS onco 99.9 3.1E-25 1.1E-29 188.6 12.6 163 62-317 4-168 (199)
101 2hjg_A GTP-binding protein ENG 99.9 3E-26 1E-30 217.9 6.2 168 63-317 175-349 (436)
102 2x77_A ADP-ribosylation factor 99.9 3.5E-26 1.2E-30 192.6 5.9 159 61-318 20-185 (189)
103 1oix_A RAS-related protein RAB 99.9 6.5E-25 2.2E-29 185.6 13.0 164 60-316 26-191 (191)
104 1moz_A ARL1, ADP-ribosylation 99.9 1.4E-25 4.7E-30 187.5 8.3 159 61-317 16-180 (183)
105 2fh5_B SR-beta, signal recogni 99.9 8.8E-25 3E-29 187.7 8.1 174 61-315 5-214 (214)
106 2wji_A Ferrous iron transport 99.9 1.4E-24 4.8E-29 179.0 7.0 160 61-315 1-163 (165)
107 2lkc_A Translation initiation 99.9 1.1E-22 3.7E-27 168.9 17.1 99 201-321 66-175 (178)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 2.6E-24 9E-29 195.3 7.3 168 62-318 2-182 (307)
109 3o47_A ADP-ribosylation factor 99.9 4.1E-25 1.4E-29 202.5 1.6 159 61-318 163-328 (329)
110 2cxx_A Probable GTP-binding pr 99.9 9.3E-25 3.2E-29 183.5 2.8 169 64-320 2-187 (190)
111 1mky_A Probable GTP-binding pr 99.9 1.2E-22 4.1E-27 193.2 15.7 167 64-316 181-354 (439)
112 3lvq_E ARF-GAP with SH3 domain 99.9 1.2E-23 4.3E-28 203.2 6.5 162 61-321 320-488 (497)
113 3dpu_A RAB family protein; roc 99.9 1.8E-23 6.1E-28 203.7 6.6 165 60-320 38-211 (535)
114 2wjg_A FEOB, ferrous iron tran 99.9 3E-23 1E-27 174.1 4.7 166 59-319 3-171 (188)
115 2qu8_A Putative nucleolar GTP- 99.9 2.1E-22 7.2E-27 174.8 9.6 170 61-318 27-206 (228)
116 2gj8_A MNME, tRNA modification 99.9 4.2E-23 1.4E-27 171.5 3.9 160 62-317 3-166 (172)
117 1svi_A GTP-binding protein YSX 99.9 1.3E-22 4.4E-27 171.3 5.5 167 61-316 21-194 (195)
118 2dyk_A GTP-binding protein; GT 99.9 1.1E-22 3.6E-27 166.1 4.5 157 64-315 2-160 (161)
119 3pqc_A Probable GTP-binding pr 99.9 2.1E-22 7.2E-27 169.6 5.7 170 61-317 21-194 (195)
120 3b1v_A Ferrous iron uptake tra 99.8 1.8E-21 6.2E-26 173.3 5.5 159 63-317 3-164 (272)
121 3a1s_A Iron(II) transport prot 99.8 3.6E-21 1.2E-25 170.3 6.0 162 61-316 3-166 (258)
122 3iev_A GTP-binding protein ERA 99.8 1.4E-20 4.7E-25 170.8 10.0 175 59-318 6-183 (308)
123 1cip_A Protein (guanine nucleo 99.8 2.9E-20 9.9E-25 171.1 11.1 124 194-318 197-345 (353)
124 1nrj_B SR-beta, signal recogni 99.8 1.2E-21 4.1E-26 168.5 1.5 148 61-303 10-170 (218)
125 3ohm_A Guanine nucleotide-bind 99.8 3.9E-20 1.3E-24 167.9 10.3 117 201-319 178-320 (327)
126 4dhe_A Probable GTP-binding pr 99.8 7.5E-21 2.6E-25 164.0 4.9 178 61-321 27-215 (223)
127 3iby_A Ferrous iron transport 99.8 4.9E-21 1.7E-25 169.2 2.8 160 64-314 2-164 (256)
128 3i8s_A Ferrous iron transport 99.8 3.9E-21 1.3E-25 171.6 1.5 167 61-318 1-170 (274)
129 4fid_A G protein alpha subunit 99.8 1.5E-19 5.1E-24 164.7 10.4 120 197-317 168-328 (340)
130 1wf3_A GTP-binding protein; GT 99.8 5.6E-20 1.9E-24 166.1 7.0 167 61-317 5-173 (301)
131 3k53_A Ferrous iron transport 99.8 2.9E-20 9.8E-25 165.7 4.5 164 61-318 1-167 (271)
132 3gee_A MNME, tRNA modification 99.8 1.4E-19 4.8E-24 172.8 8.9 163 62-316 232-397 (476)
133 3qq5_A Small GTP-binding prote 99.8 6.1E-20 2.1E-24 172.7 5.6 166 59-318 30-197 (423)
134 1u0l_A Probable GTPase ENGC; p 99.8 9E-19 3.1E-23 158.3 8.8 135 78-313 32-169 (301)
135 1xzp_A Probable tRNA modificat 99.8 4.7E-19 1.6E-23 169.4 7.2 158 63-316 243-404 (482)
136 2e87_A Hypothetical protein PH 99.7 1.4E-18 4.9E-23 160.8 7.8 168 62-317 166-336 (357)
137 1lnz_A SPO0B-associated GTP-bi 99.7 3.4E-19 1.2E-23 163.4 3.3 164 64-320 159-333 (342)
138 1mky_A Probable GTP-binding pr 99.7 1.1E-18 3.6E-23 166.0 6.7 162 64-317 2-166 (439)
139 2hjg_A GTP-binding protein ENG 99.7 5.8E-19 2E-23 167.6 0.5 162 63-317 3-165 (436)
140 2xtz_A Guanine nucleotide-bind 99.7 3.2E-18 1.1E-22 157.4 4.8 124 193-317 186-345 (354)
141 1s0u_A EIF-2-gamma, translatio 99.7 3.1E-17 1.1E-21 154.5 11.4 114 191-320 82-201 (408)
142 2qag_A Septin-2, protein NEDD5 99.7 6E-19 2.1E-23 163.3 -0.5 172 62-318 36-234 (361)
143 3sjy_A Translation initiation 99.7 1.3E-17 4.3E-22 156.9 8.1 120 190-321 75-196 (403)
144 3geh_A MNME, tRNA modification 99.7 5.3E-18 1.8E-22 161.4 5.3 161 62-319 223-386 (462)
145 3izy_P Translation initiation 99.7 1.1E-18 3.7E-23 168.3 -0.9 110 192-316 54-167 (537)
146 2ged_A SR-beta, signal recogni 99.7 7.5E-18 2.6E-22 141.7 3.4 113 61-261 46-171 (193)
147 1ega_A Protein (GTP-binding pr 99.7 3.3E-17 1.1E-21 148.0 7.0 166 61-317 6-175 (301)
148 2xtp_A GTPase IMAP family memb 99.7 2.4E-17 8.1E-22 145.7 5.9 180 60-318 19-209 (260)
149 1wb1_A Translation elongation 99.7 2.9E-17 9.9E-22 157.5 6.6 108 192-316 75-188 (482)
150 3lxx_A GTPase IMAP family memb 99.7 2.4E-17 8.2E-22 143.9 5.2 179 60-318 26-215 (239)
151 3p26_A Elongation factor 1 alp 99.7 3.1E-17 1.1E-21 157.7 6.4 101 194-306 115-227 (483)
152 1azs_C GS-alpha; complex (lyas 99.7 4.6E-17 1.6E-21 151.5 7.0 124 193-317 220-385 (402)
153 3cb4_D GTP-binding protein LEP 99.7 3.8E-16 1.3E-20 152.7 13.3 102 201-320 82-185 (599)
154 3t5d_A Septin-7; GTP-binding p 99.7 1.2E-17 4.3E-22 148.8 1.7 185 62-315 7-202 (274)
155 1kk1_A EIF2gamma; initiation o 99.7 1.2E-16 4E-21 150.6 8.4 114 191-320 84-203 (410)
156 2qtf_A Protein HFLX, GTP-bindi 99.6 2.1E-16 7.1E-21 146.2 8.3 171 63-318 178-355 (364)
157 2ywe_A GTP-binding protein LEP 99.6 6.7E-16 2.3E-20 150.7 12.2 102 201-320 84-187 (600)
158 1jny_A EF-1-alpha, elongation 99.6 3.8E-17 1.3E-21 155.0 3.3 110 192-309 86-205 (435)
159 1g7s_A Translation initiation 99.6 1.8E-16 6.1E-21 155.1 7.1 117 192-315 72-216 (594)
160 4dcu_A GTP-binding protein ENG 99.6 3.3E-17 1.1E-21 156.4 1.8 164 61-317 21-185 (456)
161 1zcb_A G alpha I/13; GTP-bindi 99.6 9.8E-17 3.3E-21 148.0 4.6 125 192-317 203-353 (362)
162 1pui_A ENGB, probable GTP-bind 99.6 3.6E-16 1.2E-20 133.2 6.3 171 62-318 25-200 (210)
163 2qnr_A Septin-2, protein NEDD5 99.6 2.2E-16 7.4E-21 142.6 5.1 86 218-318 129-215 (301)
164 2c78_A Elongation factor TU-A; 99.6 2.2E-16 7.5E-21 148.5 5.1 113 193-318 78-213 (405)
165 3j2k_7 ERF3, eukaryotic polype 99.6 6.4E-16 2.2E-20 146.6 7.7 112 191-309 96-217 (439)
166 2aka_B Dynamin-1; fusion prote 99.6 1.4E-16 4.7E-21 143.5 2.6 97 203-314 151-250 (299)
167 1d2e_A Elongation factor TU (E 99.6 7.3E-16 2.5E-20 144.5 7.2 115 192-319 68-197 (397)
168 3tr5_A RF-3, peptide chain rel 99.6 5.6E-16 1.9E-20 149.8 6.2 64 194-261 86-149 (528)
169 1zo1_I IF2, translation initia 99.6 1E-16 3.5E-21 153.3 0.6 108 192-314 53-164 (501)
170 2hf9_A Probable hydrogenase ni 99.6 4.6E-17 1.6E-21 140.5 -2.6 173 62-317 37-224 (226)
171 3lxw_A GTPase IMAP family memb 99.6 3.5E-16 1.2E-20 137.3 3.0 178 59-318 17-209 (247)
172 1zun_B Sulfate adenylate trans 99.6 1.2E-15 4.2E-20 144.6 6.1 106 191-307 105-214 (434)
173 3izq_1 HBS1P, elongation facto 99.6 1.2E-15 4.1E-20 150.1 4.8 108 191-307 246-362 (611)
174 1r5b_A Eukaryotic peptide chai 99.6 9.6E-16 3.3E-20 146.5 3.9 111 191-308 122-243 (467)
175 2elf_A Protein translation elo 99.6 8.3E-16 2.8E-20 142.5 3.4 99 201-315 71-178 (370)
176 3avx_A Elongation factor TS, e 99.6 1.8E-15 6.3E-20 154.8 5.8 114 192-318 361-487 (1289)
177 3def_A T7I23.11 protein; chlor 99.6 3.1E-15 1E-19 132.4 6.6 129 59-261 32-166 (262)
178 3q3j_B RHO-related GTP-binding 99.5 5.2E-15 1.8E-19 126.9 7.1 120 1-186 25-145 (214)
179 1f60_A Elongation factor EEF1A 99.5 2.4E-15 8.3E-20 143.4 3.7 105 192-307 87-202 (458)
180 2qag_C Septin-7; cell cycle, c 99.5 3E-15 1E-19 140.4 3.7 94 206-315 129-225 (418)
181 3c5c_A RAS-like protein 12; GD 99.5 1.1E-14 3.9E-19 121.9 6.2 119 1-185 19-140 (187)
182 2j0v_A RAC-like GTP-binding pr 99.5 2.2E-14 7.5E-19 122.3 7.8 119 2-186 8-127 (212)
183 3mca_A HBS1, elongation factor 99.5 5.1E-15 1.7E-19 145.2 4.0 103 193-305 258-371 (592)
184 1mh1_A RAC1; GTP-binding, GTPa 99.5 2.9E-14 1E-18 118.5 7.8 119 1-185 3-122 (186)
185 1h65_A Chloroplast outer envel 99.5 2.1E-14 7.1E-19 127.6 7.3 127 61-261 37-169 (270)
186 3t5g_A GTP-binding protein RHE 99.5 3.8E-14 1.3E-18 117.5 8.0 122 2-188 5-127 (181)
187 1m7b_A RND3/RHOE small GTP-bin 99.5 3.9E-14 1.3E-18 118.1 7.6 118 2-185 6-124 (184)
188 3ihw_A Centg3; RAS, centaurin, 99.5 2.2E-14 7.5E-19 119.9 5.9 114 1-185 18-132 (184)
189 3reg_A RHO-like small GTPase; 99.5 5.8E-14 2E-18 118.0 8.2 119 2-186 22-141 (194)
190 2j69_A Bacterial dynamin-like 99.5 2.1E-14 7.1E-19 143.4 6.2 117 191-317 175-325 (695)
191 2dy1_A Elongation factor G; tr 99.5 4.9E-14 1.7E-18 140.1 8.4 65 191-259 75-139 (665)
192 2q3h_A RAS homolog gene family 99.5 7.4E-14 2.5E-18 117.9 8.2 118 2-185 19-137 (201)
193 1c1y_A RAS-related protein RAP 99.5 2.1E-14 7.3E-19 117.1 4.6 120 1-185 1-121 (167)
194 2ew1_A RAS-related protein RAB 99.5 4.5E-14 1.5E-18 119.9 6.6 118 3-185 26-144 (201)
195 1gwn_A RHO-related GTP-binding 99.5 6.1E-14 2.1E-18 119.4 7.2 118 2-185 27-145 (205)
196 3t34_A Dynamin-related protein 99.5 2.7E-14 9.3E-19 132.1 5.4 91 204-310 163-254 (360)
197 2fu5_C RAS-related protein RAB 99.5 2.8E-14 9.7E-19 118.5 4.9 119 3-186 8-127 (183)
198 1udx_A The GTP-binding protein 99.5 6.6E-14 2.2E-18 131.2 7.9 93 211-320 233-328 (416)
199 2atx_A Small GTP binding prote 99.5 1E-13 3.6E-18 116.3 8.0 119 2-186 17-136 (194)
200 4gzl_A RAS-related C3 botulinu 99.5 6.3E-14 2.1E-18 119.0 6.3 120 1-186 28-148 (204)
201 1z08_A RAS-related protein RAB 99.5 7.1E-14 2.4E-18 114.4 6.4 119 2-185 5-124 (170)
202 2bcg_Y Protein YP2, GTP-bindin 99.4 2.2E-13 7.5E-18 115.5 9.5 119 3-186 8-127 (206)
203 3kkq_A RAS-related protein M-R 99.4 7.3E-14 2.5E-18 116.0 6.3 121 1-186 16-137 (183)
204 2j1l_A RHO-related GTP-binding 99.4 9.7E-14 3.3E-18 118.8 7.0 119 2-186 33-152 (214)
205 2fn4_A P23, RAS-related protei 99.4 7.1E-14 2.4E-18 115.5 5.8 121 1-186 7-128 (181)
206 2wsm_A Hydrogenase expression/ 99.4 8.2E-14 2.8E-18 119.6 6.2 108 190-320 109-217 (221)
207 3oes_A GTPase rhebl1; small GT 99.4 1.3E-13 4.6E-18 116.5 7.2 120 2-186 23-143 (201)
208 2g6b_A RAS-related protein RAB 99.4 9.8E-14 3.3E-18 114.7 6.2 121 2-187 9-131 (180)
209 1r2q_A RAS-related protein RAB 99.4 8.4E-14 2.9E-18 113.7 5.7 120 1-185 4-124 (170)
210 2hup_A RAS-related protein RAB 99.4 4.1E-14 1.4E-18 119.9 3.9 119 2-185 28-147 (201)
211 1z0j_A RAB-22, RAS-related pro 99.4 1E-13 3.4E-18 113.4 6.1 120 1-185 4-124 (170)
212 1u8z_A RAS-related protein RAL 99.4 5.4E-14 1.9E-18 114.5 4.3 120 1-185 2-122 (168)
213 2y8e_A RAB-protein 6, GH09086P 99.4 8.7E-14 3E-18 114.7 5.4 120 1-185 12-132 (179)
214 2fv8_A H6, RHO-related GTP-bin 99.4 3.1E-13 1.1E-17 114.9 8.8 119 1-185 23-142 (207)
215 2a5j_A RAS-related protein RAB 99.4 1.4E-13 4.7E-18 115.4 6.5 119 2-185 20-139 (191)
216 2efe_B Small GTP-binding prote 99.4 2.2E-13 7.4E-18 112.7 7.5 121 1-186 10-131 (181)
217 3con_A GTPase NRAS; structural 99.4 2.7E-13 9.1E-18 113.3 8.0 120 1-185 19-139 (190)
218 3cpj_B GTP-binding protein YPT 99.4 2.6E-13 9E-18 116.7 8.0 119 3-186 13-132 (223)
219 3bwd_D RAC-like GTP-binding pr 99.4 4.5E-14 1.5E-18 117.0 3.1 120 1-186 6-126 (182)
220 2gco_A H9, RHO-related GTP-bin 99.4 3.7E-13 1.3E-17 113.8 8.3 119 2-186 24-143 (201)
221 1z06_A RAS-related protein RAB 99.4 1.7E-13 5.8E-18 114.6 5.7 121 1-185 18-140 (189)
222 2bme_A RAB4A, RAS-related prot 99.4 2.4E-13 8.1E-18 113.1 6.6 119 2-185 9-128 (186)
223 2gf9_A RAS-related protein RAB 99.4 6.2E-13 2.1E-17 111.2 9.1 118 3-185 22-140 (189)
224 2h5e_A Peptide chain release f 99.4 4.3E-13 1.5E-17 129.7 9.2 67 192-262 84-150 (529)
225 1jwy_B Dynamin A GTPase domain 99.4 6.6E-14 2.3E-18 126.9 2.8 111 191-317 132-262 (315)
226 2bov_A RAla, RAS-related prote 99.4 1.7E-13 5.7E-18 115.9 5.1 120 1-185 12-132 (206)
227 3tkl_A RAS-related protein RAB 99.4 3.3E-13 1.1E-17 113.2 6.8 120 3-187 16-136 (196)
228 2nzj_A GTP-binding protein REM 99.4 3.7E-13 1.3E-17 110.6 6.9 124 1-187 2-126 (175)
229 2oil_A CATX-8, RAS-related pro 99.4 4.9E-13 1.7E-17 112.1 7.7 119 2-185 24-143 (193)
230 1zbd_A Rabphilin-3A; G protein 99.4 3.4E-13 1.2E-17 114.0 6.7 120 3-187 8-128 (203)
231 2fg5_A RAB-22B, RAS-related pr 99.4 2.6E-13 8.7E-18 114.0 5.5 119 2-185 22-141 (192)
232 2ce2_X GTPase HRAS; signaling 99.4 2.2E-13 7.5E-18 110.5 4.9 120 1-185 1-121 (166)
233 1x3s_A RAS-related protein RAB 99.4 3.7E-13 1.3E-17 112.7 6.4 119 2-185 14-134 (195)
234 1wxq_A GTP-binding protein; st 99.4 1.3E-13 4.4E-18 128.8 3.7 24 64-87 1-24 (397)
235 1dar_A EF-G, elongation factor 99.4 4.1E-13 1.4E-17 134.0 7.5 68 191-262 78-145 (691)
236 1z2a_A RAS-related protein RAB 99.4 5.2E-13 1.8E-17 108.8 6.9 118 2-185 4-122 (168)
237 2a9k_A RAS-related protein RAL 99.4 2.4E-13 8.2E-18 112.9 4.8 120 1-185 16-136 (187)
238 4dsu_A GTPase KRAS, isoform 2B 99.4 3.6E-13 1.2E-17 112.1 5.8 119 2-185 3-122 (189)
239 2o52_A RAS-related protein RAB 99.4 2E-13 6.7E-18 115.5 4.1 119 2-185 24-143 (200)
240 3q72_A GTP-binding protein RAD 99.4 5.8E-13 2E-17 108.6 6.7 119 2-186 1-120 (166)
241 1wms_A RAB-9, RAB9, RAS-relate 99.4 4.5E-13 1.5E-17 110.4 5.8 119 2-185 6-129 (177)
242 1z0f_A RAB14, member RAS oncog 99.4 4.1E-13 1.4E-17 110.7 5.6 118 3-185 15-133 (179)
243 1g16_A RAS-related protein SEC 99.4 2.8E-13 9.7E-18 110.6 4.6 118 2-184 2-120 (170)
244 2p5s_A RAS and EF-hand domain 99.4 2.5E-13 8.4E-18 114.7 3.8 119 2-185 27-146 (199)
245 2hxs_A RAB-26, RAS-related pro 99.4 1.7E-13 5.7E-18 113.1 2.7 120 1-185 4-128 (178)
246 3cbq_A GTP-binding protein REM 99.4 1.4E-13 4.7E-18 116.2 1.8 122 2-187 22-145 (195)
247 2x2e_A Dynamin-1; nitration, h 99.3 2.8E-14 9.4E-19 131.7 -2.8 96 203-313 156-254 (353)
248 2il1_A RAB12; G-protein, GDP, 99.3 1.8E-13 6E-18 115.0 2.3 119 2-185 25-144 (192)
249 3tw8_B RAS-related protein RAB 99.3 1.2E-12 4.2E-17 107.9 7.3 117 3-185 9-126 (181)
250 3cph_A RAS-related protein SEC 99.3 9.5E-13 3.2E-17 111.9 6.6 118 2-184 19-137 (213)
251 1vg8_A RAS-related protein RAB 99.3 8.8E-13 3E-17 111.6 6.3 119 2-185 7-130 (207)
252 1ky3_A GTP-binding protein YPT 99.3 7.9E-13 2.7E-17 109.2 5.9 119 2-185 7-131 (182)
253 2erx_A GTP-binding protein DI- 99.3 5.6E-13 1.9E-17 109.0 4.9 120 2-186 2-123 (172)
254 2yc2_C IFT27, small RAB-relate 99.3 1.3E-13 4.5E-18 116.7 1.1 120 2-186 19-146 (208)
255 1jal_A YCHF protein; nucleotid 99.3 2.4E-12 8.1E-17 118.2 9.2 59 64-123 3-78 (363)
256 3l0i_B RAS-related protein RAB 99.3 3E-13 1E-17 114.2 2.9 121 3-188 33-154 (199)
257 2rdo_7 EF-G, elongation factor 99.3 2.7E-12 9.2E-17 128.3 10.3 68 190-261 82-149 (704)
258 2atv_A RERG, RAS-like estrogen 99.3 5.9E-13 2E-17 112.0 4.6 118 2-185 27-145 (196)
259 3th5_A RAS-related C3 botulinu 99.0 1.3E-13 4.4E-18 116.9 0.0 119 2-186 29-148 (204)
260 3dz8_A RAS-related protein RAB 99.3 1.3E-13 4.4E-18 115.6 -0.5 118 3-185 23-141 (191)
261 3bc1_A RAS-related protein RAB 99.3 1E-12 3.5E-17 109.6 5.1 118 3-185 11-140 (195)
262 3gj0_A GTP-binding nuclear pro 99.3 5.4E-13 1.9E-17 114.5 3.1 120 1-186 13-133 (221)
263 3q85_A GTP-binding protein REM 99.3 9.3E-13 3.2E-17 107.6 4.4 119 3-185 2-122 (169)
264 1f6b_A SAR1; gtpases, N-termin 99.3 1.6E-12 5.4E-17 109.8 5.9 116 2-186 24-140 (198)
265 2yv5_A YJEQ protein; hydrolase 99.3 1.2E-11 4.1E-16 111.5 10.6 96 201-312 67-164 (302)
266 2gf0_A GTP-binding protein DI- 99.3 1.6E-12 5.3E-17 109.3 4.4 119 2-185 7-127 (199)
267 2f7s_A C25KG, RAS-related prot 99.3 6.5E-13 2.2E-17 113.5 2.0 119 2-185 24-154 (217)
268 2zej_A Dardarin, leucine-rich 99.3 3.6E-13 1.2E-17 112.3 0.2 119 3-186 2-126 (184)
269 2xex_A Elongation factor G; GT 99.3 3.9E-12 1.3E-16 127.0 7.1 66 192-261 77-142 (693)
270 1m2o_B GTP-binding protein SAR 99.3 9.4E-12 3.2E-16 104.3 8.1 116 2-186 22-138 (190)
271 1oix_A RAS-related protein RAB 99.3 8.7E-12 3E-16 104.6 7.8 118 3-185 29-147 (191)
272 4bas_A ADP-ribosylation factor 99.3 2.6E-12 8.9E-17 107.9 4.5 117 2-186 16-141 (199)
273 4djt_A GTP-binding nuclear pro 99.3 1.5E-12 5.3E-17 111.3 3.1 120 2-186 10-131 (218)
274 1zd9_A ADP-ribosylation factor 99.3 1.5E-12 5.1E-17 108.9 2.9 117 2-186 21-138 (188)
275 2f9l_A RAB11B, member RAS onco 99.3 6.7E-12 2.3E-16 105.9 7.0 118 3-185 5-123 (199)
276 3clv_A RAB5 protein, putative; 99.3 3.3E-12 1.1E-16 107.3 5.0 152 2-183 6-158 (208)
277 1zj6_A ADP-ribosylation factor 99.3 4.7E-12 1.6E-16 105.5 5.8 116 2-186 15-131 (187)
278 2wkq_A NPH1-1, RAS-related C3 99.3 7.7E-12 2.6E-16 113.7 7.6 117 3-185 155-272 (332)
279 3p32_A Probable GTPase RV1496/ 99.2 2.5E-12 8.4E-17 118.7 3.8 106 190-316 172-283 (355)
280 2h57_A ADP-ribosylation factor 99.2 5.8E-12 2E-16 105.3 5.4 117 2-186 20-140 (190)
281 2h17_A ADP-ribosylation factor 99.2 7.3E-12 2.5E-16 103.9 4.8 116 2-186 20-136 (181)
282 1ksh_A ARF-like protein 2; sma 99.2 2.2E-11 7.4E-16 101.3 7.0 116 2-186 17-133 (186)
283 2fh5_B SR-beta, signal recogni 99.2 2.7E-12 9.1E-17 109.4 1.2 122 2-187 6-130 (214)
284 1r8s_A ADP-ribosylation factor 99.2 6.7E-12 2.3E-16 101.9 3.5 114 4-186 1-115 (164)
285 2x77_A ADP-ribosylation factor 99.2 3.9E-11 1.3E-15 100.0 8.2 116 2-186 21-137 (189)
286 1upt_A ARL1, ADP-ribosylation 99.2 2.8E-11 9.6E-16 98.8 7.0 116 2-186 6-122 (171)
287 1moz_A ARL1, ADP-ribosylation 99.2 1.2E-11 4E-16 102.5 4.4 116 2-186 17-133 (183)
288 2b6h_A ADP-ribosylation factor 99.2 1.3E-11 4.6E-16 103.5 4.8 116 2-186 28-144 (192)
289 2dby_A GTP-binding protein; GD 99.2 2.2E-11 7.5E-16 112.4 6.5 52 246-307 201-252 (368)
290 1fzq_A ADP-ribosylation factor 99.1 8.4E-12 2.9E-16 103.7 1.6 116 2-186 15-131 (181)
291 1n0u_A EF-2, elongation factor 99.1 1.1E-11 3.7E-16 126.3 2.4 66 191-260 99-164 (842)
292 2qpt_A EH domain-containing pr 99.1 1.2E-11 4.1E-16 120.3 2.0 68 191-261 155-233 (550)
293 3llu_A RAS-related GTP-binding 99.1 1.6E-11 5.6E-16 103.2 2.3 117 2-185 19-142 (196)
294 1yrb_A ATP(GTP)binding protein 99.1 1E-10 3.4E-15 102.9 5.7 122 190-316 109-256 (262)
295 2wji_A Ferrous iron transport 99.0 1.1E-10 3.6E-15 95.4 4.0 58 1-60 1-59 (165)
296 3lvq_E ARF-GAP with SH3 domain 99.0 3.4E-10 1.2E-14 109.0 7.4 117 1-186 320-437 (497)
297 2p67_A LAO/AO transport system 99.0 7.4E-11 2.5E-15 108.2 1.2 105 191-316 150-260 (341)
298 3r7w_A Gtpase1, GTP-binding pr 99.0 1.2E-10 4.1E-15 105.2 2.2 123 2-186 2-129 (307)
299 2www_A Methylmalonic aciduria 99.0 5.9E-11 2E-15 109.1 -0.1 101 191-315 168-277 (349)
300 3l82_B F-box only protein 4; T 98.9 7.4E-10 2.5E-14 92.9 5.8 108 196-318 108-224 (227)
301 3o47_A ADP-ribosylation factor 98.9 1.4E-10 4.7E-15 105.8 1.3 116 2-186 164-280 (329)
302 2gj8_A MNME, tRNA modification 98.9 8.3E-10 2.9E-14 90.8 4.9 124 2-185 3-128 (172)
303 3dpu_A RAB family protein; roc 98.9 6.1E-10 2.1E-14 108.2 3.6 120 1-189 39-167 (535)
304 2dyk_A GTP-binding protein; GT 98.9 1.7E-09 5.8E-14 87.1 5.5 118 4-185 2-121 (161)
305 2cxx_A Probable GTP-binding pr 98.9 9.3E-11 3.2E-15 97.5 -2.5 129 4-186 2-136 (190)
306 2wjg_A FEOB, ferrous iron tran 98.9 1E-09 3.4E-14 91.1 3.4 58 1-60 5-63 (188)
307 3h2y_A GTPase family protein; 98.8 4.7E-09 1.6E-13 97.0 8.0 97 200-315 56-158 (368)
308 3vqt_A RF-3, peptide chain rel 98.8 5.5E-09 1.9E-13 101.4 7.7 64 195-262 105-168 (548)
309 3zvr_A Dynamin-1; hydrolase, D 98.8 1.2E-09 4.1E-14 108.8 2.6 109 191-314 151-275 (772)
310 1nrj_B SR-beta, signal recogni 98.8 3E-10 1E-14 96.9 -1.6 51 2-60 11-64 (218)
311 2ged_A SR-beta, signal recogni 98.8 4.4E-10 1.5E-14 93.8 -1.2 51 2-60 47-100 (193)
312 4a9a_A Ribosome-interacting GT 98.8 2.2E-09 7.7E-14 99.0 2.9 216 63-315 72-298 (376)
313 2qm8_A GTPase/ATPase; G protei 98.8 1.3E-09 4.6E-14 99.5 1.1 102 191-315 149-259 (337)
314 3l2o_B F-box only protein 4; s 98.7 1.1E-08 3.8E-13 89.9 5.5 108 196-318 193-309 (312)
315 3ec1_A YQEH GTPase; atnos1, at 98.7 2E-08 6.7E-13 92.9 7.3 98 199-315 57-160 (369)
316 2qu8_A Putative nucleolar GTP- 98.7 8.5E-09 2.9E-13 88.6 4.0 57 2-60 28-85 (228)
317 3pqc_A Probable GTP-binding pr 98.7 2.1E-09 7E-14 89.5 -0.5 120 3-185 23-146 (195)
318 3def_A T7I23.11 protein; chlor 98.6 2.2E-08 7.5E-13 88.1 4.5 59 1-61 34-94 (262)
319 1svi_A GTP-binding protein YSX 98.6 5.4E-09 1.8E-13 87.2 0.5 122 3-186 23-148 (195)
320 4dkx_A RAS-related protein RAB 98.6 1.1E-08 3.8E-13 87.5 0.8 43 59-101 9-51 (216)
321 2xtp_A GTPase IMAP family memb 98.5 2.4E-08 8.1E-13 87.6 2.8 57 2-60 21-80 (260)
322 3j25_A Tetracycline resistance 98.5 1.5E-08 5.2E-13 100.2 1.8 67 192-262 69-135 (638)
323 3k53_A Ferrous iron transport 98.5 2.5E-08 8.5E-13 88.2 1.9 58 1-60 1-59 (271)
324 2ohf_A Protein OLA1, GTP-bindi 98.5 1.3E-08 4.5E-13 94.3 0.0 31 59-89 18-48 (396)
325 1wf3_A GTP-binding protein; GT 98.5 1.4E-07 4.8E-12 84.7 6.0 124 2-186 6-131 (301)
326 3qq5_A Small GTP-binding prote 98.5 1.8E-07 6.3E-12 87.7 6.7 57 3-60 34-92 (423)
327 3a1s_A Iron(II) transport prot 98.4 6.6E-08 2.3E-12 84.9 2.6 58 1-60 3-61 (258)
328 3gee_A MNME, tRNA modification 98.4 2.3E-07 7.9E-12 88.4 6.3 56 3-60 233-290 (476)
329 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 8.6E-07 2.9E-11 82.2 9.0 83 61-143 18-124 (392)
330 3iby_A Ferrous iron transport 98.4 2E-07 7E-12 81.7 4.2 54 5-60 3-57 (256)
331 3b1v_A Ferrous iron uptake tra 98.4 1.2E-07 4.1E-12 83.9 2.6 55 3-60 3-58 (272)
332 4fn5_A EF-G 1, elongation fact 98.3 4.4E-06 1.5E-10 83.6 13.4 51 207-261 102-152 (709)
333 2iwr_A Centaurin gamma 1; ANK 98.3 1.6E-07 5.5E-12 76.9 1.6 40 60-100 4-43 (178)
334 1puj_A YLQF, conserved hypothe 98.2 8.5E-07 2.9E-11 78.8 5.0 90 205-315 15-104 (282)
335 1kao_A RAP2A; GTP-binding prot 98.2 3.4E-07 1.2E-11 73.6 2.2 39 61-99 1-39 (167)
336 3geh_A MNME, tRNA modification 98.2 7.1E-07 2.4E-11 84.7 3.8 56 3-60 224-281 (462)
337 3izy_P Translation initiation 98.1 1.4E-07 4.8E-12 91.0 -3.4 116 2-186 3-118 (537)
338 3iev_A GTP-binding protein ERA 98.1 1.7E-06 5.7E-11 77.9 3.6 125 2-185 9-135 (308)
339 3lxx_A GTPase IMAP family memb 98.0 1.3E-05 4.3E-10 69.2 8.0 57 2-60 28-87 (239)
340 1ek0_A Protein (GTP-binding pr 98.0 1.8E-06 6E-11 69.6 2.3 39 61-99 1-39 (170)
341 3t5d_A Septin-7; GTP-binding p 98.0 4E-06 1.4E-10 74.1 4.8 58 3-60 8-74 (274)
342 3i8s_A Ferrous iron transport 97.9 5.9E-06 2E-10 73.0 4.5 59 1-61 1-60 (274)
343 1h65_A Chloroplast outer envel 97.9 1.7E-05 5.8E-10 69.8 6.8 58 2-61 38-97 (270)
344 3ec1_A YQEH GTPase; atnos1, at 97.9 6.2E-07 2.1E-11 82.8 -2.6 23 64-86 163-185 (369)
345 3lxw_A GTPase IMAP family memb 97.9 1.2E-05 4.3E-10 69.8 5.4 58 1-60 19-79 (247)
346 2qtf_A Protein HFLX, GTP-bindi 97.9 6.1E-06 2.1E-10 75.9 3.6 56 3-60 178-235 (364)
347 2cjw_A GTP-binding protein GEM 97.9 3.4E-06 1.2E-10 70.2 1.4 120 61-185 4-127 (192)
348 3h2y_A GTPase family protein; 97.8 2.6E-07 9E-12 85.3 -6.4 24 64-87 161-184 (368)
349 3c5h_A Glucocorticoid receptor 97.8 1.1E-06 3.8E-11 76.8 -2.3 42 59-100 15-69 (255)
350 2g3y_A GTP-binding protein GEM 97.8 5.9E-06 2E-10 70.1 1.7 120 61-185 35-158 (211)
351 2qag_B Septin-6, protein NEDD5 97.7 5.4E-06 1.8E-10 77.5 0.8 26 63-88 42-67 (427)
352 3cnl_A YLQF, putative uncharac 97.7 1.8E-05 6.2E-10 69.4 4.2 82 208-313 16-97 (262)
353 1zo1_I IF2, translation initia 97.7 5.9E-06 2E-10 79.0 1.0 66 112-186 52-117 (501)
354 2qag_A Septin-2, protein NEDD5 97.7 2.3E-05 7.9E-10 72.0 4.5 58 3-60 37-104 (361)
355 4dhe_A Probable GTP-binding pr 97.7 1.9E-05 6.4E-10 66.9 3.7 58 3-60 29-88 (223)
356 2e87_A Hypothetical protein PH 97.7 2.8E-05 9.5E-10 71.3 4.6 56 3-60 167-223 (357)
357 1jal_A YCHF protein; nucleotid 97.7 3.4E-05 1.2E-09 70.6 4.9 57 3-60 2-75 (363)
358 1lnz_A SPO0B-associated GTP-bi 97.6 5.8E-06 2E-10 75.4 -0.7 54 5-60 160-215 (342)
359 1t9h_A YLOQ, probable GTPase E 97.6 2.2E-05 7.4E-10 70.4 2.8 96 201-309 74-169 (307)
360 1pui_A ENGB, probable GTP-bind 97.6 3.8E-05 1.3E-09 64.3 3.8 55 3-60 26-81 (210)
361 3sjy_A Translation initiation 97.6 4.8E-05 1.6E-09 70.9 4.6 70 110-186 74-143 (403)
362 1jny_A EF-1-alpha, elongation 97.5 2.1E-05 7.2E-10 74.2 1.7 76 109-186 82-158 (435)
363 1wxq_A GTP-binding protein; st 97.5 0.00021 7.1E-09 66.4 8.1 24 4-27 1-24 (397)
364 1xzp_A Probable tRNA modificat 97.5 6.6E-05 2.3E-09 71.5 4.8 56 3-60 243-300 (482)
365 2hf9_A Probable hydrogenase ni 97.5 3.1E-05 1.1E-09 65.8 1.9 37 2-38 37-73 (226)
366 1tq4_A IIGP1, interferon-induc 97.5 0.00015 5.3E-09 67.5 6.4 66 246-316 175-252 (413)
367 2j37_W Signal recognition part 97.5 1.9E-05 6.4E-10 75.6 0.1 78 213-314 213-310 (504)
368 3sop_A Neuronal-specific septi 97.4 9.9E-05 3.4E-09 64.9 4.8 25 63-87 2-26 (270)
369 1g7s_A Translation initiation 97.4 3.9E-05 1.3E-09 75.0 2.3 65 112-186 71-136 (594)
370 3j2k_7 ERF3, eukaryotic polype 97.4 8.5E-05 2.9E-09 70.0 4.5 73 110-185 94-168 (439)
371 1ega_A Protein (GTP-binding pr 97.4 0.00016 5.6E-09 64.6 5.8 27 2-28 7-33 (301)
372 3cnl_A YLQF, putative uncharac 97.4 2.1E-05 7.3E-10 68.9 -0.4 54 64-121 100-154 (262)
373 1r5b_A Eukaryotic peptide chai 97.4 8.2E-05 2.8E-09 70.7 3.5 73 110-185 120-194 (467)
374 1u0l_A Probable GTPase ENGC; p 97.4 8.5E-06 2.9E-10 73.0 -3.3 98 18-187 32-130 (301)
375 1wb1_A Translation elongation 97.3 0.00014 4.6E-09 69.5 4.3 66 111-186 73-139 (482)
376 3izq_1 HBS1P, elongation facto 97.3 0.00037 1.3E-08 68.4 7.2 38 109-146 243-280 (611)
377 2xtz_A Guanine nucleotide-bind 97.3 2.2E-05 7.7E-10 71.8 -1.6 77 109-185 181-263 (354)
378 1puj_A YLQF, conserved hypothe 97.3 5.5E-05 1.9E-09 67.1 0.8 56 62-121 119-175 (282)
379 1s0u_A EIF-2-gamma, translatio 97.2 0.00047 1.6E-08 64.3 7.1 68 111-187 81-150 (408)
380 2qag_C Septin-7; cell cycle, c 97.2 0.00029 9.8E-09 65.8 5.5 58 3-60 31-97 (418)
381 1zun_B Sulfate adenylate trans 97.2 0.00019 6.4E-09 67.6 4.2 70 109-186 102-171 (434)
382 2lkc_A Translation initiation 97.2 3.9E-05 1.3E-09 62.2 -0.8 115 61-186 6-121 (178)
383 1f60_A Elongation factor EEF1A 97.2 0.00024 8.3E-09 67.3 4.5 38 109-146 83-120 (458)
384 1n0u_A EF-2, elongation factor 97.2 0.00024 8.1E-09 72.4 4.6 70 107-185 94-163 (842)
385 3ohm_A Guanine nucleotide-bind 97.1 0.00013 4.3E-09 65.9 1.9 77 109-185 165-247 (327)
386 2qnr_A Septin-2, protein NEDD5 97.1 1.5E-05 5.2E-10 71.4 -4.3 59 63-121 18-86 (301)
387 2j69_A Bacterial dynamin-like 97.1 0.00017 5.7E-09 72.0 2.4 67 111-185 174-243 (695)
388 2h5e_A Peptide chain release f 97.1 0.00028 9.6E-09 68.0 3.8 68 109-186 80-148 (529)
389 1d2e_A Elongation factor TU (E 97.0 0.00034 1.2E-08 65.0 3.7 38 109-146 64-101 (397)
390 2c78_A Elongation factor TU-A; 97.0 0.00044 1.5E-08 64.4 3.9 70 108-186 72-142 (405)
391 4fid_A G protein alpha subunit 96.9 0.00014 4.7E-09 66.0 0.3 77 109-185 159-241 (340)
392 1azs_C GS-alpha; complex (lyas 96.9 0.00072 2.4E-08 62.7 4.8 76 110-185 216-297 (402)
393 2rcn_A Probable GTPase ENGC; Y 96.9 0.0014 4.9E-08 59.7 6.3 83 210-310 127-212 (358)
394 2elf_A Protein translation elo 96.8 0.00026 8.8E-09 65.2 1.0 33 111-143 60-92 (370)
395 1f5n_A Interferon-induced guan 96.8 0.0004 1.4E-08 67.5 2.3 63 61-123 36-103 (592)
396 3tr5_A RF-3, peptide chain rel 96.8 0.00013 4.3E-09 70.4 -1.2 67 110-185 81-147 (528)
397 2dy1_A Elongation factor G; tr 96.8 0.00051 1.7E-08 68.2 3.0 127 3-185 9-139 (665)
398 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0012 4.1E-08 61.0 4.6 59 3-61 22-96 (396)
399 3r7w_B Gtpase2, GTP-binding pr 96.7 0.00024 8E-09 64.0 -0.4 114 5-186 1-120 (331)
400 2dby_A GTP-binding protein; GD 96.7 0.0015 5.3E-08 59.9 5.0 24 4-27 2-25 (368)
401 2aka_B Dynamin-1; fusion prote 96.6 0.0016 5.4E-08 57.6 4.3 29 3-31 26-54 (299)
402 3t1o_A Gliding protein MGLA; G 96.5 0.00029 9.8E-09 57.9 -0.8 125 59-185 10-148 (198)
403 2rdo_7 EF-G, elongation factor 96.5 0.0024 8.3E-08 63.6 5.6 70 108-186 79-148 (704)
404 3avx_A Elongation factor TS, e 96.4 0.00093 3.2E-08 69.3 2.2 72 106-186 354-426 (1289)
405 1dar_A EF-G, elongation factor 96.4 0.00087 3E-08 66.8 1.8 68 110-186 76-143 (691)
406 1cip_A Protein (guanine nucleo 96.3 0.0023 7.9E-08 58.4 4.0 76 110-185 192-273 (353)
407 2v3c_C SRP54, signal recogniti 96.3 0.0011 3.8E-08 62.1 1.5 140 66-311 102-305 (432)
408 1kk1_A EIF2gamma; initiation o 96.3 0.0055 1.9E-07 57.0 6.2 39 2-40 9-52 (410)
409 3dm5_A SRP54, signal recogniti 96.2 0.0013 4.5E-08 61.6 1.7 69 213-306 212-280 (443)
410 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0045 1.5E-07 56.7 4.8 76 110-185 200-281 (362)
411 2xex_A Elongation factor G; GT 96.1 0.0049 1.7E-07 61.4 5.3 68 110-186 74-141 (693)
412 1ni3_A YCHF GTPase, YCHF GTP-b 96.0 0.0099 3.4E-07 54.9 6.5 58 3-60 20-94 (392)
413 3szr_A Interferon-induced GTP- 96.0 0.011 3.7E-07 57.9 7.0 23 5-27 47-69 (608)
414 1bif_A 6-phosphofructo-2-kinas 95.9 0.00014 4.9E-09 69.1 -6.5 25 62-86 38-62 (469)
415 2x2e_A Dynamin-1; nitration, h 95.9 0.0053 1.8E-07 55.9 3.9 30 3-32 31-60 (353)
416 2wsm_A Hydrogenase expression/ 95.7 0.0039 1.3E-07 52.3 2.1 26 3-28 30-55 (221)
417 1jwy_B Dynamin A GTPase domain 95.5 0.0087 3E-07 53.2 3.6 27 3-29 24-50 (315)
418 3kl4_A SRP54, signal recogniti 95.3 0.0036 1.2E-07 58.5 0.5 171 66-307 100-280 (433)
419 2qpt_A EH domain-containing pr 95.1 0.015 5.3E-07 56.1 4.5 27 3-29 65-91 (550)
420 3sop_A Neuronal-specific septi 94.8 0.016 5.6E-07 50.6 3.2 25 3-27 2-26 (270)
421 1kgd_A CASK, peripheral plasma 94.7 0.016 5.5E-07 47.1 3.0 23 4-26 6-28 (180)
422 1j8m_F SRP54, signal recogniti 94.7 0.0019 6.7E-08 57.4 -3.0 172 66-307 101-281 (297)
423 3t34_A Dynamin-related protein 94.7 0.0051 1.7E-07 56.2 -0.3 114 65-185 36-216 (360)
424 1ye8_A Protein THEP1, hypothet 94.6 0.02 6.7E-07 46.7 3.2 23 4-26 1-23 (178)
425 1ex7_A Guanylate kinase; subst 94.5 0.021 7.1E-07 47.0 3.0 21 6-26 4-24 (186)
426 1lvg_A Guanylate kinase, GMP k 94.4 0.022 7.4E-07 47.2 2.9 22 4-25 5-26 (198)
427 1kht_A Adenylate kinase; phosp 94.3 0.026 8.9E-07 45.8 3.2 25 1-25 1-25 (192)
428 1ye8_A Protein THEP1, hypothet 94.1 0.0041 1.4E-07 50.9 -2.0 23 64-86 1-23 (178)
429 3ney_A 55 kDa erythrocyte memb 94.1 0.033 1.1E-06 46.3 3.5 24 3-26 19-42 (197)
430 1qhx_A CPT, protein (chloramph 94.1 0.033 1.1E-06 44.8 3.5 26 1-26 1-26 (178)
431 1tev_A UMP-CMP kinase; ploop, 93.8 0.038 1.3E-06 45.0 3.3 25 1-25 1-25 (196)
432 2plr_A DTMP kinase, probable t 93.8 0.042 1.4E-06 45.4 3.6 25 1-25 2-26 (213)
433 1f5n_A Interferon-induced guan 93.8 0.063 2.1E-06 52.2 5.3 25 3-27 38-62 (592)
434 3a00_A Guanylate kinase, GMP k 93.7 0.035 1.2E-06 45.3 2.9 21 6-26 4-24 (186)
435 1s96_A Guanylate kinase, GMP k 93.7 0.035 1.2E-06 46.9 3.0 22 5-26 18-39 (219)
436 3tau_A Guanylate kinase, GMP k 93.5 0.04 1.4E-06 45.9 3.0 22 5-26 10-31 (208)
437 1udx_A The GTP-binding protein 93.5 0.065 2.2E-06 49.8 4.7 23 5-27 159-181 (416)
438 1jbk_A CLPB protein; beta barr 93.5 0.041 1.4E-06 44.2 3.0 22 5-26 45-66 (195)
439 1zp6_A Hypothetical protein AT 93.4 0.04 1.4E-06 44.8 2.8 22 5-26 11-32 (191)
440 2qor_A Guanylate kinase; phosp 93.4 0.043 1.5E-06 45.4 3.0 23 4-26 13-35 (204)
441 3tr0_A Guanylate kinase, GMP k 93.4 0.044 1.5E-06 45.1 3.0 23 4-26 8-30 (205)
442 1kgd_A CASK, peripheral plasma 93.3 0.0069 2.3E-07 49.4 -2.0 22 65-86 7-28 (180)
443 1z6g_A Guanylate kinase; struc 93.3 0.044 1.5E-06 46.1 2.9 21 5-25 25-45 (218)
444 3kb2_A SPBC2 prophage-derived 93.2 0.048 1.6E-06 43.4 2.9 22 5-26 3-24 (173)
445 1znw_A Guanylate kinase, GMP k 93.2 0.048 1.6E-06 45.3 2.9 21 6-26 23-43 (207)
446 2j41_A Guanylate kinase; GMP, 93.1 0.061 2.1E-06 44.3 3.4 25 3-27 6-30 (207)
447 4a9a_A Ribosome-interacting GT 93.0 0.11 3.9E-06 47.5 5.4 56 4-61 73-129 (376)
448 4gp7_A Metallophosphoesterase; 93.0 0.046 1.6E-06 44.0 2.5 20 5-24 11-30 (171)
449 1lvg_A Guanylate kinase, GMP k 92.9 0.0085 2.9E-07 49.7 -2.0 22 65-86 6-27 (198)
450 3cm0_A Adenylate kinase; ATP-b 92.9 0.07 2.4E-06 43.1 3.5 24 2-25 3-26 (186)
451 1htw_A HI0065; nucleotide-bind 92.9 0.059 2E-06 43.0 2.9 23 5-27 35-57 (158)
452 2www_A Methylmalonic aciduria 92.7 0.066 2.3E-06 48.5 3.4 23 3-25 74-96 (349)
453 1y63_A LMAJ004144AAA protein; 92.7 0.073 2.5E-06 43.3 3.4 24 3-26 10-33 (184)
454 3c8u_A Fructokinase; YP_612366 92.7 0.073 2.5E-06 44.2 3.5 23 3-25 22-44 (208)
455 3dl0_A Adenylate kinase; phosp 92.7 0.065 2.2E-06 44.6 3.2 22 4-25 1-22 (216)
456 3fb4_A Adenylate kinase; psych 92.7 0.065 2.2E-06 44.6 3.2 22 4-25 1-22 (216)
457 1cke_A CK, MSSA, protein (cyti 92.7 0.069 2.4E-06 44.7 3.3 22 4-25 6-27 (227)
458 3vaa_A Shikimate kinase, SK; s 92.7 0.067 2.3E-06 44.1 3.2 22 5-26 27-48 (199)
459 1kag_A SKI, shikimate kinase I 92.7 0.065 2.2E-06 42.8 3.0 23 4-26 5-27 (173)
460 2qag_B Septin-6, protein NEDD5 92.6 0.065 2.2E-06 49.9 3.2 24 4-27 43-66 (427)
461 1ly1_A Polynucleotide kinase; 92.6 0.084 2.9E-06 42.2 3.6 22 4-25 3-24 (181)
462 1knq_A Gluconate kinase; ALFA/ 92.6 0.081 2.8E-06 42.4 3.4 22 4-25 9-30 (175)
463 2p65_A Hypothetical protein PF 92.5 0.052 1.8E-06 43.5 2.1 22 5-26 45-66 (187)
464 3iij_A Coilin-interacting nucl 92.4 0.078 2.7E-06 42.7 3.2 24 3-26 11-34 (180)
465 1ex7_A Guanylate kinase; subst 92.4 0.011 3.8E-07 48.7 -2.0 21 66-86 4-24 (186)
466 2if2_A Dephospho-COA kinase; a 92.4 0.08 2.7E-06 43.6 3.2 22 4-25 2-23 (204)
467 3a00_A Guanylate kinase, GMP k 92.3 0.011 3.8E-07 48.3 -2.1 21 66-86 4-24 (186)
468 1s96_A Guanylate kinase, GMP k 92.3 0.012 4.1E-07 49.8 -2.0 23 65-87 18-40 (219)
469 3ec2_A DNA replication protein 92.3 0.06 2.1E-06 43.4 2.3 22 5-26 40-61 (180)
470 3lw7_A Adenylate kinase relate 92.3 0.073 2.5E-06 42.2 2.8 19 5-23 3-21 (179)
471 3t61_A Gluconokinase; PSI-biol 92.2 0.076 2.6E-06 43.7 2.9 22 5-26 20-41 (202)
472 2jaq_A Deoxyguanosine kinase; 92.2 0.086 3E-06 43.1 3.2 21 5-25 2-22 (205)
473 4eun_A Thermoresistant glucoki 92.2 0.08 2.7E-06 43.6 3.0 22 4-25 30-51 (200)
474 3ney_A 55 kDa erythrocyte memb 92.1 0.012 4.2E-07 48.8 -2.0 23 64-86 20-42 (197)
475 1zp6_A Hypothetical protein AT 92.1 0.014 4.9E-07 47.6 -1.7 22 65-86 11-32 (191)
476 3tr0_A Guanylate kinase, GMP k 92.1 0.013 4.4E-07 48.4 -2.0 22 65-86 9-30 (205)
477 3p32_A Probable GTPase RV1496/ 92.1 0.087 3E-06 47.8 3.3 24 3-26 79-102 (355)
478 2bdt_A BH3686; alpha-beta prot 92.1 0.083 2.9E-06 42.9 2.9 21 5-25 4-24 (189)
479 3tlx_A Adenylate kinase 2; str 92.0 0.098 3.3E-06 44.7 3.4 24 2-25 28-51 (243)
480 1np6_A Molybdopterin-guanine d 92.0 0.088 3E-06 42.7 3.0 22 5-26 8-29 (174)
481 2bbw_A Adenylate kinase 4, AK4 92.0 0.093 3.2E-06 44.8 3.3 22 4-25 28-49 (246)
482 2vli_A Antibiotic resistance p 92.0 0.078 2.7E-06 42.7 2.6 25 1-25 3-27 (183)
483 3trf_A Shikimate kinase, SK; a 92.0 0.096 3.3E-06 42.3 3.2 23 4-26 6-28 (185)
484 1znw_A Guanylate kinase, GMP k 91.9 0.014 4.7E-07 48.7 -2.0 21 66-86 23-43 (207)
485 2i3b_A HCR-ntpase, human cance 91.9 0.088 3E-06 43.3 2.9 22 5-26 3-24 (189)
486 2v54_A DTMP kinase, thymidylat 91.9 0.11 3.9E-06 42.5 3.6 25 2-26 3-27 (204)
487 1via_A Shikimate kinase; struc 91.9 0.094 3.2E-06 42.1 3.0 22 5-26 6-27 (175)
488 4gp7_A Metallophosphoesterase; 91.9 0.019 6.5E-07 46.3 -1.2 19 66-84 12-30 (171)
489 2rhm_A Putative kinase; P-loop 91.8 0.11 3.6E-06 42.2 3.4 23 3-25 5-27 (193)
490 3asz_A Uridine kinase; cytidin 91.8 0.1 3.5E-06 43.2 3.3 23 3-25 6-28 (211)
491 2cdn_A Adenylate kinase; phosp 91.7 0.12 4E-06 42.5 3.5 24 2-25 19-42 (201)
492 2ehv_A Hypothetical protein PH 91.6 0.094 3.2E-06 44.4 2.9 19 6-24 33-51 (251)
493 3gfo_A Cobalt import ATP-bindi 91.6 0.18 6.1E-06 44.1 4.8 37 5-51 36-72 (275)
494 1z6g_A Guanylate kinase; struc 91.6 0.016 5.3E-07 48.9 -2.0 22 65-86 25-46 (218)
495 1nks_A Adenylate kinase; therm 91.6 0.12 3.9E-06 41.9 3.3 21 5-25 3-23 (194)
496 2iyv_A Shikimate kinase, SK; t 91.6 0.11 3.6E-06 42.1 3.0 24 1-25 1-24 (184)
497 3tau_A Guanylate kinase, GMP k 91.5 0.017 5.8E-07 48.2 -1.9 22 65-86 10-31 (208)
498 3uie_A Adenylyl-sulfate kinase 91.5 0.1 3.5E-06 42.9 2.9 23 4-26 26-48 (200)
499 3bos_A Putative DNA replicatio 91.5 0.1 3.4E-06 43.8 2.9 22 5-26 54-75 (242)
500 2f1r_A Molybdopterin-guanine d 91.5 0.053 1.8E-06 43.9 1.1 21 5-25 4-24 (171)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.7e-37 Score=264.78 Aligned_cols=164 Identities=28% Similarity=0.506 Sum_probs=132.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+++||++|||+|||||||+.||+.+.|...|.||++..+ .+.+.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~---------------------------------- 56 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY---------------------------------- 56 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEE----------------------------------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEE----------------------------------
Confidence 6789999999999999999999999999999999986443 33332
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+++..+.++||||+|+
T Consensus 57 --------------------------~~~~~v~l~iwDtaGq-------------------------------------- 72 (216)
T 4dkx_A 57 --------------------------LEDRTIRLQLWDTAGL-------------------------------------- 72 (216)
T ss_dssp --------------------------CSSCEEEEEEECCSCT--------------------------------------
T ss_pred --------------------------ecceEEEEEEEECCCc--------------------------------------
Confidence 3344556667788877
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
++|..+++.++++++++++|||+++++||+++. .|+..
T Consensus 73 -----------------------------------------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~-~~~~~ 110 (216)
T 4dkx_A 73 -----------------------------------------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDD 110 (216)
T ss_dssp -----------------------------------------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHH-HHHHH
T ss_pred -----------------------------------------hhhhhHHHHHhccccEEEEEeecchhHHHHHHH-HHHHH
Confidence 777778888899999999999999999999998 89998
Q ss_pred hhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 240 ITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 240 i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+.... +++|++|||||+|+... |+++.+++++++++++ +.|+|+||++|.||+++|+.+++.+..
T Consensus 111 i~~~~~~~~piilVgNK~Dl~~~------------r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 111 VRTERGSDVIIMLVGNKTDLADK------------RQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHTTSSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred HHHhcCCCCeEEEEeeccchHhc------------CcccHHHHhhHHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 87764 68999999999999765 8999999999999998 689999999999999999999998863
No 2
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.98 E-value=2.5e-32 Score=235.52 Aligned_cols=185 Identities=39% Similarity=0.685 Sum_probs=155.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|||||||+++|.++.|...+.||++..+...+.+++..+.+.+|||+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------- 85 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGS----------------- 85 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCS-----------------
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCC-----------------
Confidence 446689999999999999999999999999999999999999888888899999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 86 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 86 --------------------------------------------------------------PYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --------------------------------------------------------------GGGTTTGGGGCTTCSEEE
T ss_pred --------------------------------------------------------------HhHHHHHHHHcCCCeEEE
Confidence 666677777889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++++|+++...|+..+....+++|+++||||+|+..+............+.+..+++..+++.++..+|+|+||
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 99999999999994338999999888899999999999998764444445555668899999999999998449999999
Q ss_pred ccCCC-HHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKG-LKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~-v~~~f~~l~~~i~~~~~~~ 322 (330)
++|.| ++++|+.+++.+++...+.
T Consensus 184 ~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 184 FTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp TTCHHHHHHHHHHHHHHHHC-----
T ss_pred CCCcccHHHHHHHHHHHHhccCcCC
Confidence 99998 9999999999998776544
No 3
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=5.9e-32 Score=226.75 Aligned_cols=184 Identities=70% Similarity=1.175 Sum_probs=160.4
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
+|+.+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 63 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ------------------ 63 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCS------------------
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCC------------------
Confidence 47789999999999999999999999999999999999888888888999999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 64 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 64 -------------------------------------------------------------EDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp -------------------------------------------------------------GGGTTTGGGGCTTCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHhccCCcEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+++...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 99999999999997679999988777999999999999987654444444555688999999999999985599999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
+|.|++++|+.+++.+++++..+
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCCC--
T ss_pred CccCHHHHHHHHHHHHhcccccC
Confidence 99999999999999998876544
No 4
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=9e-32 Score=226.15 Aligned_cols=178 Identities=43% Similarity=0.813 Sum_probs=155.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.|...+.||.+..+...+.+++..+.+.+|||+|+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 65 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------- 65 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCS-------------------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4579999999999999999999999999999999999888778888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.|..++..+++++|++++|
T Consensus 66 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 85 (184)
T 1m7b_A 66 ------------------------------------------------------------PYYDNVRPLSYPDSDAVLIC 85 (184)
T ss_dssp ------------------------------------------------------------GGGTTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhhhHHhhcCCCcEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec-
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL- 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~- 299 (330)
||++++.+|+++...|+..+....+++|+++||||+|+..+.....+......+.++.++++.+++.++..+|+++||+
T Consensus 86 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 165 (184)
T 1m7b_A 86 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165 (184)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecC
Confidence 9999999999994489999988778999999999999986544444444555688999999999999886799999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+++.+++
T Consensus 166 ~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 166 SENSVRDIFHVATLACVN 183 (184)
T ss_dssp BHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 689999999999998875
No 5
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-31 Score=225.40 Aligned_cols=179 Identities=70% Similarity=1.185 Sum_probs=156.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.|...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~------------------- 76 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ------------------- 76 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCS-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC-------------------
Confidence 3568999999999999999999999999999999999888878888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 77 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 77 ------------------------------------------------------------EDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp ------------------------------------------------------------SSSTTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------cchhHHHHHhcCCCCEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+++.+.|+..+....+++|+++|+||+|+.......+......++.+..+++..+++.++..+|+++||++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 176 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCC
Confidence 99999999999976799999888789999999999999876444444444556789999999999999855899999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++++|+.+++.++++
T Consensus 177 g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 177 QKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CTTHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999998764
No 6
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=2.4e-31 Score=225.34 Aligned_cols=175 Identities=43% Similarity=0.827 Sum_probs=154.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.....+||+++|++|+|||||+++|.++.+...+.+|++..+...+.+++..+.+.+|||+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 81 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ----------------- 81 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCc-----------------
Confidence 345679999999999999999999999999999999999999888889999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 82 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 82 --------------------------------------------------------------EEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp --------------------------------------------------------------GGGTTTGGGGCTTCSEEE
T ss_pred --------------------------------------------------------------HHHHHHhHhhccCCcEEE
Confidence 666677777889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.+|+++...|+..+....+++|+++|+||+|+..+. .+.+..+++..+++.++...|+++||
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa 169 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG----------SDDVTKQEGDDLCQKLGCVAYIEASS 169 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT----------TTCCCHHHHHHHHHHHTCSCEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC----------CCcccHHHHHHHHHhcCCCEEEEeec
Confidence 99999999999998558999998888899999999999997532 37789999999999998544999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
++|.|++++|+.+++.+.+++..+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~~~~~~ 193 (194)
T 3reg_A 170 VAKIGLNEVFEKSVDCIFSNKPVP 193 (194)
T ss_dssp TTTBSHHHHHHHHHHHHHCSCC--
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998876543
No 7
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=9.2e-32 Score=231.08 Aligned_cols=178 Identities=53% Similarity=0.960 Sum_probs=150.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|+|||||+++|..+.|...+.||+++.+...+.+++..+.+.+|||+|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 67 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQ------------------- 67 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4579999999999999999999999999999999999888878888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
++|..++..+++++|++++|
T Consensus 68 ------------------------------------------------------------~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 68 ------------------------------------------------------------EDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp ------------------------------------------------------------CCCCC--CGGGTTCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHhhccCCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+++.+.|+..+....+++|+++|+||+|+..+.... ....+.+..+++..+++.++..+|+++||++
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHH----HTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccc----ccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 999999999999667999998887899999999999997642110 1123467889999999999856999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC
Q psy9997 301 QKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~~ 321 (330)
|.|++++|+.+++.+.++...
T Consensus 164 g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999876543
No 8
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=226.83 Aligned_cols=181 Identities=60% Similarity=1.021 Sum_probs=148.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.|...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 78 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ------------------- 78 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCS-------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4579999999999999999999999999999999999888888888998999999999999
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 79 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 98 (201)
T 2q3h_A 79 ------------------------------------------------------------DEFDKLRPLCYTNTDIFLLC 98 (201)
T ss_dssp ------------------------------------------------------------TTCSSSGGGGGTTCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHhHhhcCCCcEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+++...|+..+....+++|+++|+||+|+..+......+.....+.+..+++..+++.++..+|+++||++
T Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (201)
T 2q3h_A 99 FSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCC
Confidence 99999999999965799999888789999999999999865443334444445788999999999999855999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCC
Q psy9997 301 QKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~ 320 (330)
|.|++++|+.+++.+++++.
T Consensus 179 g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 179 QKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CTTHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcccc
Confidence 99999999999999876543
No 9
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=2.9e-31 Score=227.44 Aligned_cols=179 Identities=42% Similarity=0.809 Sum_probs=154.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
....+||+++|++|||||||+++|.++.|...+.||++..+...+.+++..+.+.+|||+|+
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 86 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS------------------ 86 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCS------------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 35679999999999999999999999999999999999888777888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.|..++..+++++|++++
T Consensus 87 -------------------------------------------------------------~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 87 -------------------------------------------------------------PYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -------------------------------------------------------------GGGTTTGGGGCTTCSEEEE
T ss_pred -------------------------------------------------------------HhhhHHHHhhccCCCEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+++...|+..+....++.|+++||||+|+..+.....+......+.++.++++.+++.++..+|+++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 99999999999994489999988778999999999999986544444444455688999999999999886799999999
Q ss_pred -cCCCHHHHHHHHHHHhcC
Q psy9997 300 -TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 -~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+++.+++
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998864
No 10
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=227.86 Aligned_cols=178 Identities=27% Similarity=0.459 Sum_probs=143.9
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 82 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ------------------ 82 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCC------------------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 35679999999999999999999999999999999999888777888888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++.+|++++
T Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 83 -------------------------------------------------------------DEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -------------------------------------------------------------CTTCCCCGGGTTTCCEEEE
T ss_pred -------------------------------------------------------------cchHHHHHHHHhcCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
|||++++++|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++.++ ++|+++|
T Consensus 102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 167 (201)
T 3oes_A 102 VYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPE------------REVQAVEGKKLAESWG-ATFMESS 167 (201)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECC
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCccc------------cccCHHHHHHHHHHhC-CeEEEEe
Confidence 99999999999998 8998887763 57899999999999765 7889999999999998 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCCCCC-CCCCcccC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPPEPP-KKRKCVLL 330 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~~~~-~~~~~~~~ 330 (330)
|++|.|++++|+.+++.+.+..... ++++|.||
T Consensus 168 a~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~ 201 (201)
T 3oes_A 168 ARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence 9999999999999999998775554 55678876
No 11
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=227.06 Aligned_cols=181 Identities=44% Similarity=0.899 Sum_probs=140.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------- 92 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ------------------- 92 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4679999999999999999999999999999999998888888888999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 93 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 93 ------------------------------------------------------------DDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp ------------------------------------------------------------------------CEEEEEEE
T ss_pred ------------------------------------------------------------hhhhHHHHHHhccCCEEEEE
Confidence 55566667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+.+...|+..+.....++|+++|+||+|+.......+.......+.++.++++.+++.++..+|+++||++
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 192 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTT
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCC
Confidence 99999999999975799999888789999999999999876544444444556789999999999999855999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCC
Q psy9997 301 QKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~~~ 320 (330)
|.|++++|+.+++.+++.+.
T Consensus 193 g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 193 HDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TBSHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999986543
No 12
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=6.5e-31 Score=220.90 Aligned_cols=176 Identities=32% Similarity=0.562 Sum_probs=146.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 62 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------- 62 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCc-------------------
Confidence 4679999999999999999999999999999999998888888889999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 63 ------------------------------------------------------------EEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp ---------------------------------------------------------------CTTHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 55556667778889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++..+++.++ ++++++||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 147 (189)
T 4dsu_A 83 FAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPS-------------RTVDTKQAQDLARSYG-IPFIETSA 147 (189)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSS-------------CSSCHHHHHHHHHHHT-CCEEECCT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcc-------------cccCHHHHHHHHHHcC-CeEEEEeC
Confidence 9999999999998 8988887754 5899999999999974 6678899999999998 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC----------CCCCCCCCCcccC
Q psy9997 299 LTQKGLKNVFDEAILAALE----------PPEPPKKRKCVLL 330 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~----------~~~~~~~~~~~~~ 330 (330)
++|.|++++|+.+++.+.+ ..+.+++.+|+||
T Consensus 148 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 148 KTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 9999999999999998862 2333455778886
No 13
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2.4e-30 Score=220.65 Aligned_cols=178 Identities=53% Similarity=0.950 Sum_probs=156.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++||+++|++|||||||+++|.++.+...+.||++..+...+.+++..+.+.+|||+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 83 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQ------------------- 83 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCS-------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 5678999999999999999999999999999999999988877888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 84 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 84 ------------------------------------------------------------EDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp ------------------------------------------------------------GGGTTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------hhHHHHHHHhcCCCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++++|+.+...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||++
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 183 (201)
T 2gco_A 104 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKT 183 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCC
Confidence 99999999999955899998887789999999999999876555555555556789999999999999855899999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.+++.+++
T Consensus 184 g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 184 KEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
No 14
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=5.8e-31 Score=221.57 Aligned_cols=166 Identities=22% Similarity=0.338 Sum_probs=145.1
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+..+||+++|++|||||||+++|+++.|...+.|| +..+...+.+++..+.+++|||+|+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~---------------- 77 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGP---------------- 77 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSS----------------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCC----------------
Confidence 35678899999999999999999999999999988888 4556688889999999999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+. +++.+|++
T Consensus 78 ---------------------------------------------------------------~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 78 ---------------------------------------------------------------PELQ-----FAAWVDAV 89 (184)
T ss_dssp ---------------------------------------------------------------CCHH-----HHHHCSEE
T ss_pred ---------------------------------------------------------------hhhh-----eecCCCEE
Confidence 4443 56779999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+|+++. .|+..+.... .++|+++||||+|+.... .+.+..+++..+++.++.++|++
T Consensus 90 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAAN----------PRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHTTTCEEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccccc----------ccccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999999998 7999988764 589999999999996421 27899999999999997679999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+||++|.|++++|+.+++.+++.+
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887643
No 15
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=4.4e-31 Score=222.75 Aligned_cols=165 Identities=26% Similarity=0.436 Sum_probs=143.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.+...+||+++|++|||||||+++|.++.|...+.+|++..+...+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------- 79 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL----------------- 79 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCC-----------------
Confidence 346789999999999999999999999999999999999988778888999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..+ ..+++.+|+++
T Consensus 80 --------------------------------------------------------------~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 80 --------------------------------------------------------------DTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp ----------------------------------------------------------------CCCT-HHHHTTCSEEE
T ss_pred --------------------------------------------------------------CcchhH-HHHHhhCCEEE
Confidence 333333 34677899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
+|||++++++|+++. .|+..+.... .++|+++|+||+|+... +.++.+++.++++.++ ++|+
T Consensus 97 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 162 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQY------------RQVTKAEGVALAGRFG-CLFF 162 (187)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchhhc------------CccCHHHHHHHHHHcC-CcEE
Confidence 999999999999998 8999988764 68999999999999765 7789999999999998 6999
Q ss_pred EEee-ccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSA-LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa-~~~~~v~~~f~~l~~~i~~ 317 (330)
++|| ++|.|++++|+.+++.+.+
T Consensus 163 e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 163 EVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp ECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEeecCccccHHHHHHHHHHHHhh
Confidence 9999 8999999999999998764
No 16
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=1.4e-30 Score=217.89 Aligned_cols=169 Identities=28% Similarity=0.473 Sum_probs=148.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+|||+|+
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 64 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ------------------- 64 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 4679999999999999999999999999999999999988888889999999999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 65 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 65 ------------------------------------------------------------DEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp ------------------------------------------------------------CTTCCCCGGGTTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhHHHHHHHhcCCEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++.++ ++|+++||
T Consensus 85 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 150 (181)
T 3t5g_A 85 YSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHME------------RVISYEEGKALAESWN-AAFLESSA 150 (181)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc------------ceecHHHHHHHHHHhC-CcEEEEec
Confidence 9999999999998 7998887664 47999999999999765 8899999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEPP 322 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~~ 322 (330)
++|.|++++|+.+++.+.+.+.+.
T Consensus 151 ~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999998765543
No 17
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1e-30 Score=223.60 Aligned_cols=178 Identities=71% Similarity=1.203 Sum_probs=155.2
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+..+||+++|++|||||||+++|..+.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 88 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL------------------ 88 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCS------------------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCc------------------
Confidence 46789999999999999999999999999999999999888888889999999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 89 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 89 -------------------------------------------------------------EDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp -------------------------------------------------------------GGGTTTGGGGCTTCSEEEE
T ss_pred -------------------------------------------------------------hhhHHHHHHHhccCCEEEE
Confidence 6666677778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+++...|+..+.....+.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 99999999999997679999988888999999999999987765555555666678999999999999987789999999
Q ss_pred cCCCHHHHHHHHHHHhc
Q psy9997 300 TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~ 316 (330)
+|.|++++|+.+++.++
T Consensus 188 ~g~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAVL 204 (204)
T ss_dssp TCTTHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998764
No 18
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-30 Score=221.74 Aligned_cols=183 Identities=52% Similarity=0.915 Sum_probs=153.2
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.++||+++|++|||||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||+|+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 83 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ------------------ 83 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTC------------------
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCc------------------
Confidence 46789999999999999999999999999999999998888777888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 84 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 84 -------------------------------------------------------------EDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp -------------------------------------------------------------TTCTTTGGGGCTTCCEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHhhcCCCCEEEE
Confidence 5555666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+|+.+...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++..+..+|+++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 99999999999995589999988778999999999999987655455555555678899999999999985589999999
Q ss_pred cCCCHHHHHHHHHHHhcCCCCC
Q psy9997 300 TQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+|.|++++|+.+++.++++...
T Consensus 183 ~g~gi~el~~~l~~~i~~~~~~ 204 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQKRYG 204 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999876543
No 19
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=1.3e-30 Score=218.48 Aligned_cols=165 Identities=26% Similarity=0.526 Sum_probs=119.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.||++..+. ..+.+++..+.+.+|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 67 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ------------------ 67 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCC------------------
Confidence 34689999999999999999999999998888899887764 47778888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 68 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 68 -------------------------------------------------------------ERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp -------------------------------------------------------------------CCTTTTTCSEEEE
T ss_pred -------------------------------------------------------------hhhhhhHHHHHhcCCEEEE
Confidence 5556667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++++++.++ ++++++||
T Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 152 (183)
T 2fu5_C 87 VYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK------------RQVSKERGEKLALDYG-IKFMETSA 152 (183)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC------------CCSCHHHHHHHHHHHT-CEEEECCC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCcc------------CcCCHHHHHHHHHHcC-CeEEEEeC
Confidence 99999999999998 7999988764 58999999999999765 7788999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 153 ~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 153 KANINVENAFFTLARDIKAK 172 (183)
T ss_dssp ---CCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 20
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.3e-30 Score=214.60 Aligned_cols=164 Identities=27% Similarity=0.516 Sum_probs=145.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
|+.+||+++|++|+|||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 61 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT------------------- 61 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCCh-------------------
Confidence 5689999999999999999999999999999999999888888888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++++|++++|
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 62 ------------------------------------------------------------EQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp ------------------------------------------------------------CSSTTHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 44555566678889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+|+.+. .|+..+... ..+.|+++|+||+|+..+ +.+..++++.+++.++..+++++||
T Consensus 82 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 82 YSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE------------RVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECcccccc------------ccCCHHHHHHHHHHccCCcEEEecC
Confidence 9999999999998 788887765 358999999999999765 7788899999999985589999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTTBSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998874
No 21
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=222.71 Aligned_cols=166 Identities=32% Similarity=0.560 Sum_probs=147.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 72 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ----------------- 72 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCT-----------------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCCh-----------------
Confidence 346789999999999999999999999999999999999888888888888899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++.+|+++
T Consensus 73 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 73 --------------------------------------------------------------EDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp --------------------------------------------------------------TCCHHHHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------hhhHHHHHHHHhhCCEEE
Confidence 555555666788899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++++|+.+. .|+..+..... +.|+++|+||+|+... +.+..+++..+++.++ ++|+++
T Consensus 91 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 156 (206)
T 2bov_A 91 CVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVET 156 (206)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCcccc------------ccccHHHHHHHHHHhC-CeEEEE
Confidence 999999999999998 89998887654 8999999999999765 6788999999999998 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+++.+.+
T Consensus 157 Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 157 SAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988864
No 22
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=4e-31 Score=221.06 Aligned_cols=177 Identities=54% Similarity=0.959 Sum_probs=133.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|+|||||+++|..+.+...+.||+++.+...+.+++..+.+++|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 66 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ------------------- 66 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC--------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 4578999999999999999999999999989999988777666666777777778887777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 67 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 86 (182)
T 3bwd_D 67 ------------------------------------------------------------EDYNRLRPLSYRGADVFILA 86 (182)
T ss_dssp ------------------------------------------------------------CTTTTTGGGGGTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhhhHHhhccCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+++.+.|+..+....++.|+++|+||+|+........ .....+.+..+++..+++.++..+|+++||++
T Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 87 FSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFI--DHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHH--HC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCccccc--ccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 9999999999997679999988777999999999999976422111 12233557889999999999855999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy9997 301 QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~~ 318 (330)
|.|++++|+.+++.++++
T Consensus 165 ~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp CTTHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999998764
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=3.6e-30 Score=215.65 Aligned_cols=166 Identities=31% Similarity=0.514 Sum_probs=149.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|+|||||+++|.+..+...+.+|.+..+.....+++..+.+.+|||+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~----------------- 76 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ----------------- 76 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSC-----------------
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCc-----------------
Confidence 456789999999999999999999999999999999999998888899999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++++|+++
T Consensus 77 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 77 --------------------------------------------------------------EEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp --------------------------------------------------------------GGGCSSHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------hhhHHHHHHHHhcCCEEE
Confidence 556666677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++++|+.+. .|+..+... ..++|+++|+||+|+... +.+..++++.+++.++ ++|+++
T Consensus 95 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 160 (183)
T 3kkq_A 95 IVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHL------------RKVTRDQGKEMATKYN-IPYIET 160 (183)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTT------------CCSCHHHHHHHHHHHT-CCEEEE
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhc------------cCcCHHHHHHHHHHhC-CeEEEe
Confidence 999999999999998 898888664 368999999999999765 7899999999999998 799999
Q ss_pred eec-cCCCHHHHHHHHHHHhcC
Q psy9997 297 SAL-TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~-~~~~v~~~f~~l~~~i~~ 317 (330)
||+ +|.|++++|+.+++.+.+
T Consensus 161 Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp BCSSSCBSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHhh
Confidence 999 999999999999988764
No 24
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=2.8e-29 Score=209.32 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=130.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.+|..+.|.. +.||+++.+.+.+.+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~-------------------------------- 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDG-------------------------------- 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETT--------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECC--------------------------------
Confidence 578999999999999999999999999976 77887665554444443
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+.+++|||+|+
T Consensus 52 ----------------------------~~~~l~i~Dt~G~--------------------------------------- 64 (178)
T 2iwr_A 52 ----------------------------QTHLVLIREEAGA--------------------------------------- 64 (178)
T ss_dssp ----------------------------EEEEEEEEECSSS---------------------------------------
T ss_pred ----------------------------EEEEEEEEECCCC---------------------------------------
Confidence 3445667788887
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
++ ..+++++|++++|||++++++|+++. .|+..+
T Consensus 65 ----------------------------------------~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~-~~~~~i 98 (178)
T 2iwr_A 65 ----------------------------------------PD-----AKFSGWADAVIFVFSLEDENSFQAVS-RLHGQL 98 (178)
T ss_dssp ----------------------------------------CC-----HHHHHHCSEEEEEEETTCHHHHHHHH-HHHHHH
T ss_pred ----------------------------------------ch-----hHHHHhCCEEEEEEECcCHHHHHHHH-HHHHHH
Confidence 32 23567899999999999999999998 776555
Q ss_pred hhc---C-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 241 THH---C-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 241 ~~~---~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
... . +++|+++||||+|+.... .+.+..++++++++.++.++|+++||++|.|++++|+.+++.++
T Consensus 99 ~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 99 SSLRGEGRGGLALALVGTQDRISASS----------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHCSSSCCCEEEEEEECTTCBTTB----------CCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEEECccccccc----------cCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 443 2 589999999999995321 27789999999999886589999999999999999999999887
Q ss_pred CC
Q psy9997 317 EP 318 (330)
Q Consensus 317 ~~ 318 (330)
+.
T Consensus 169 ~~ 170 (178)
T 2iwr_A 169 TL 170 (178)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 25
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.1e-29 Score=215.66 Aligned_cols=105 Identities=22% Similarity=0.385 Sum_probs=88.3
Q ss_pred cccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH
Q psy9997 205 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE 282 (330)
Q Consensus 205 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 282 (330)
.+.+.+++.++++++|||++++.+|+.+. .|...+... ..++|++|||||+|+... +.+..++++
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL~~~------------r~v~~~e~~ 169 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRC------------REVSVSEGR 169 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTCGGG------------CCSCHHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHHhcC------------ceEeHHHHH
Confidence 34566788899999999999999999998 788877654 258999999999999754 778889999
Q ss_pred HHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCCCC
Q psy9997 283 KLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPPK 323 (330)
Q Consensus 283 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~~~ 323 (330)
.++..++ ++|+|+||++|.||+++|+.+++.+......++
T Consensus 170 ~~a~~~~-~~~~e~SAk~g~~v~elf~~l~~~i~~~~~~~~ 209 (211)
T 2g3y_A 170 ACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209 (211)
T ss_dssp HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHhccccc
Confidence 9999988 699999999999999999999998865544443
No 26
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=3e-30 Score=212.23 Aligned_cols=164 Identities=32% Similarity=0.561 Sum_probs=145.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
|..+||+++|++|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 62 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ------------------- 62 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 6789999999999999999999999999999999999888888888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++.+|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 63 ------------------------------------------------------------EDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------chhHHHHHHHhhcCCEEEEE
Confidence 44555566678889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+.+. .|+..+..... +.|+++|+||+|+..+ +.+..++++.+++.++ ++++++||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (168)
T 1u8z_A 83 FSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRADQWN-VNYVETSA 148 (168)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECCT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEeCC
Confidence 9999999999998 89988887654 8999999999999765 6788899999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 149 ~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 149 KTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 27
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=3.1e-30 Score=220.16 Aligned_cols=168 Identities=25% Similarity=0.415 Sum_probs=139.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.|...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 88 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ------------------ 88 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 4579999999999999999999999999888999998776 457788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++++|++++
T Consensus 89 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 107 (201)
T 2hup_A 89 -------------------------------------------------------------ERFRTITQSYYRSANGAIL 107 (201)
T ss_dssp -------------------------------------------------------------GGGHHHHHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHHhhCCEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+++. .|+..+.... .++|+++|+||+|+... +.+..++++++++.++..+|+++||
T Consensus 108 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 108 AYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSEL------------REVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp EEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCccccc------------cccCHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999998 8999988765 68999999999999764 7788999999999998339999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
++|.|++++|+.+++.+.++..
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999976544
No 28
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=1.1e-29 Score=209.67 Aligned_cols=164 Identities=30% Similarity=0.566 Sum_probs=140.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+|||+|+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 65 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ------------------ 65 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45789999999999999999999999998888999987775 57778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 66 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 66 -------------------------------------------------------------ERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp --------------------------------------------------------------------CCSSTTCSEEEE
T ss_pred -------------------------------------------------------------HhhhhhHHHHhccCCEEEE
Confidence 5555666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+++.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++.++ .+++++||
T Consensus 85 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 150 (170)
T 1z08_A 85 VYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE------------RHVSIQEAESYAESVG-AKHYHTSA 150 (170)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEBT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEecC
Confidence 99999999999998 8998887654 57999999999999765 6788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998865
No 29
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.1e-30 Score=218.11 Aligned_cols=165 Identities=28% Similarity=0.494 Sum_probs=146.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ------------------ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 4579999999999999999999999999988999998766 457888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++++|++++
T Consensus 86 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 86 -------------------------------------------------------------ERFRSITQSYYRSANALIL 104 (201)
T ss_dssp -------------------------------------------------------------GGGHHHHGGGSTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhcCCEEEE
Confidence 5666667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.+++..+ ++|+++||
T Consensus 105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 170 (201)
T 2ew1_A 105 TYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAER------------REVSQQRAEEFSEAQD-MYYLETSA 170 (201)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CCEEECCT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8999988765 57999999999999754 7788899999999887 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 171 ~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 171 KESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 30
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.5e-30 Score=217.85 Aligned_cols=164 Identities=26% Similarity=0.462 Sum_probs=142.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.++.+...+.+|++..+...+..++..+.+.+|||+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 66 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGS------------------- 66 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGG-------------------
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCCh-------------------
Confidence 3568999999999999999999999999988999998888777788888888999999988
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 67 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 86 (199)
T 2gf0_A 67 ------------------------------------------------------------HQFPAMQRLSISKGHAFILV 86 (199)
T ss_dssp ------------------------------------------------------------GSCHHHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------HHhHHHHHHhhccCCEEEEE
Confidence 55555566678889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++..+++.++ ++|+++|
T Consensus 87 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~S 151 (199)
T 2gf0_A 87 FSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQ-------------REVDTREAQAVAQEWK-CAFMETS 151 (199)
T ss_dssp EETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSS-------------CSSCHHHHHHHHHHHT-CEEEECB
T ss_pred EECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCc-------------cccCHHHHHHHHHHhC-CeEEEEe
Confidence 9999999999998 6776665542 4789999999999964 5577888999999988 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+++++.+.++
T Consensus 152 a~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 152 AKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTTTBSHHHHHHHHHHHCSSS
T ss_pred cCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999988654
No 31
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=8.1e-30 Score=216.61 Aligned_cols=168 Identities=28% Similarity=0.380 Sum_probs=138.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+||+++|++|||||||+++|.+..+...+.++.+ +.+...+.+++..+.+.+|||+|+++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------------- 84 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD--------------- 84 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG---------------
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc---------------
Confidence 34579999999999999999999987655444445554 44456778889999999999999833
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccc-ccCccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDR-LRPLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~-~~~~~~~~~d~~ 217 (330)
+.. ++..+++.+|++
T Consensus 85 ----------------------------------------------------------------~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 85 ----------------------------------------------------------------AGGWLRDHCLQTGDAF 100 (195)
T ss_dssp ----------------------------------------------------------------GGHHHHHHHHHHCSEE
T ss_pred ----------------------------------------------------------------chhhhHHHhhccCCEE
Confidence 222 445567889999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+|+.+. .|+.++.... .++|+++||||+|+... +.++.++++.+++.++ ++|+|
T Consensus 101 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~a~~~~-~~~~e 166 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIE 166 (195)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhcccc------------CCcCHHHHHHHHHHhC-CEEEE
Confidence 9999999999999998 8999887765 48999999999999765 7788999999999987 69999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+||++|.|++++|+.+++.+.+...
T Consensus 167 ~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 167 TSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp EBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred EcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999876543
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=4.7e-30 Score=213.71 Aligned_cols=168 Identities=25% Similarity=0.350 Sum_probs=143.7
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECC-ceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGG-EPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.++.+||+++|++|+|||||+++|.++.+...+.||++..+ ...+.+++ ..+.+.+|||+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~---------------- 66 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ---------------- 66 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC----------------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC----------------
Confidence 46789999999999999999999999998888888887554 55777766 5788899999888
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+...+..+++++|++
T Consensus 67 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 67 ---------------------------------------------------------------TIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp ---------------------------------------------------------------CTTCTTHHHHHTTCSEE
T ss_pred ---------------------------------------------------------------ccccchhhHHHhhCCEE
Confidence 55556666778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC---CCCc-EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC---QKTP-FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~p-iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
++|||++++.+|+++. .|+..+.... .+.| +++|+||+|+... +.+..+++..+++.++ +++
T Consensus 84 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~ 149 (178)
T 2hxs_A 84 LLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHM------------RTIKPEKHLRFCQENG-FSS 149 (178)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccccccc------------cccCHHHHHHHHHHcC-CcE
Confidence 9999999999999998 8998887753 2455 8999999999764 6788899999999998 799
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+++||++|.|++++|+.+++.+.+.+.
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 150 HFVSAKTGDSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999987654
No 33
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=8.1e-30 Score=212.53 Aligned_cols=169 Identities=30% Similarity=0.485 Sum_probs=148.6
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 67 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ----------------- 67 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT-----------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 456789999999999999999999999999999999999988888888988899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 68 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 68 --------------------------------------------------------------EEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp --------------------------------------------------------------TTTSCCHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------hhhHHHHHHHHhhCCEEE
Confidence 555556666788899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+|+.+. .|+..+... ..+.|+++|+||+|+... +.+..+++..++...+ ++|+++
T Consensus 86 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 151 (181)
T 2fn4_A 86 LVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQ------------RQVPRSEASAFGASHH-VAYFEA 151 (181)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CeEEEe
Confidence 999999999999998 888887443 258999999999999765 6788899999999987 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
||++|.|++++|+.+.+.+.+..+
T Consensus 152 Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999875543
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=1.6e-29 Score=208.38 Aligned_cols=165 Identities=24% Similarity=0.466 Sum_probs=144.7
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
++..+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~----------------- 65 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ----------------- 65 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 35679999999999999999999999999888889988776 457778888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++...+..+++++|+++
T Consensus 66 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 66 --------------------------------------------------------------ERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp --------------------------------------------------------------GGGGGGHHHHHTTCSEEE
T ss_pred --------------------------------------------------------------HHhhhhhHHhccCCCEEE
Confidence 555566677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+|+.+. .|+..+.... +++|+++|+||+|+..+ +.+..++++.+++..+ ++++++|
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1r2q_A 84 VVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK------------RAVDFQEAQSYADDNS-LLFMETS 149 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence 999999999999998 8988887764 68999999999999764 6788899999999987 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.+.+.+.+
T Consensus 150 a~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TTTCTTHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987754
No 35
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=3.1e-29 Score=209.32 Aligned_cols=168 Identities=26% Similarity=0.431 Sum_probs=145.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
..+..+||+++|++|+|||||+++|.+..+...+.++++..+. ..+.+++..+.+.+|||+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 71 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ---------------- 71 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS----------------
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC----------------
Confidence 3466799999999999999999999999998888899887764 47778888889999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+++...+..+++.+|++
T Consensus 72 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 72 ---------------------------------------------------------------ERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp ---------------------------------------------------------------GGGGGGTHHHHTTCSEE
T ss_pred ---------------------------------------------------------------hhhhhhhHHHhccCCEE
Confidence 55666667778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+|+.+. .|+..+.... +++|+++|+||+|+... +.+..++++.+++.++ ++++++
T Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 154 (181)
T 2efe_B 89 IIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDA------------RKVTAEDAQTYAQENG-LFFMET 154 (181)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc------------ccCCHHHHHHHHHHcC-CEEEEE
Confidence 9999999999999998 8998888765 58999999999999765 7788899999999987 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
||++|.|++++|+.+++.+.+.+
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 155 SAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTCC---
T ss_pred ECCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999887654
No 36
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=9.6e-30 Score=211.11 Aligned_cols=167 Identities=24% Similarity=0.337 Sum_probs=131.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||+++|.+..+...+.++..+.+...+.+++..+.+.+|||+|++.+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------------- 65 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL---------------- 65 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCcc----------------
Confidence 4678999999999999999999999887665543323344567788888899999999998321
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
.+..+...+++.+|++++|
T Consensus 66 -------------------------------------------------------------~~~~~~~~~~~~~~~~i~v 84 (175)
T 2nzj_A 66 -------------------------------------------------------------DKSWSQESCLQGGSAYVIV 84 (175)
T ss_dssp ---------------------------------------------------------------CHHHHHTTTSCSEEEEE
T ss_pred -------------------------------------------------------------chhhhHHhhcccCCEEEEE
Confidence 0334455677889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.++..++ ++++++||
T Consensus 85 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 150 (175)
T 2nzj_A 85 YSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARC------------REVSVEEGRACAVVFD-CKFIETSA 150 (175)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCTTT------------CCSCHHHHHHHHHHHT-SEEEECBT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhccc------------cccCHHHHHHHHHHcC-CeEEEEec
Confidence 9999999999998 8988887753 58999999999999765 7788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 151 ~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988653
No 37
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=1.6e-29 Score=208.14 Aligned_cols=164 Identities=31% Similarity=0.497 Sum_probs=145.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 64 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ------------------ 64 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTG------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCc------------------
Confidence 3578999999999999999999999999989999998666 457778888888999999888
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 65 -------------------------------------------------------------EEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp -------------------------------------------------------------GGTTCCCHHHHTTCCEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHhcCCCEEEE
Confidence 5556666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+++.+. .|+..+.....+.|+++|+||+|+... +.+..++++.+++.++ ++++++||+
T Consensus 84 v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 149 (168)
T 1z2a_A 84 VFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD------------SCIKNEEAEGLAKRLK-LRFYRTSVK 149 (168)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG------------CSSCHHHHHHHHHHHT-CEEEECBTT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEecC
Confidence 99999999999998 799988877788999999999999765 6788899999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+.+.+++
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998865
No 38
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=208.99 Aligned_cols=165 Identities=32% Similarity=0.525 Sum_probs=145.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 68 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ------------------ 68 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCc------------------
Confidence 45689999999999999999999999998888899876664 57788888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 69 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 87 (181)
T 3tw8_B 69 -------------------------------------------------------------ERFRTITSTYYRGTHGVIV 87 (181)
T ss_dssp -------------------------------------------------------------GGCSSCCGGGGTTCSEEEE
T ss_pred -------------------------------------------------------------hhhhhhHHHHhccCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||++++.+++.+. .|+..+....++.|+++|+||+|+... +.+..+++..++...+ ++++++||+
T Consensus 88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (181)
T 3tw8_B 88 VYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPER------------KVVETEDAYKFAGQMG-IQLFETSAK 153 (181)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchh------------cccCHHHHHHHHHHcC-CeEEEEECC
Confidence 99999999999998 899999888889999999999999765 7788899999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.|++++|+.+.+.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 39
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=1.7e-29 Score=207.99 Aligned_cols=161 Identities=20% Similarity=0.338 Sum_probs=122.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+||+++|++|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------------------- 59 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ--------------------- 59 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCC---------------------
Confidence 479999999999999999999876654 4456777777778888999999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+..++..+++.+|++++|||
T Consensus 60 ----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 60 ----------------------------------------------------------DGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp -----------------------------------------------------------------------CCEEEEEEE
T ss_pred ----------------------------------------------------------ccchhhhhhhhhhCCEEEEEEE
Confidence 5566667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 223 VVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
++++++|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.++..++ ++|+++||++
T Consensus 82 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 147 (166)
T 3q72_A 82 VTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRS------------REVSVDEGRACAVVFD-CKFIETSAAL 147 (166)
T ss_dssp TTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSS------------CCSCHHHHHHHHHHTT-CEEEECBGGG
T ss_pred CCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccccccc------------cccCHHHHHHHHHHhC-CcEEEeccCC
Confidence 99999999998 7888887653 68999999999999875 7889999999999998 6999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.+++.+.+
T Consensus 148 ~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 40
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=2.3e-29 Score=212.64 Aligned_cols=167 Identities=25% Similarity=0.471 Sum_probs=142.4
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.....+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 80 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ---------------- 80 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG----------------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc----------------
Confidence 3456799999999999999999999999998888888887774 47788888889999999988
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+++..++..+++++|++
T Consensus 81 ---------------------------------------------------------------~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 81 ---------------------------------------------------------------ESFRSITRSYYRGAAGA 97 (191)
T ss_dssp ---------------------------------------------------------------GGTSCCCHHHHTTCSEE
T ss_pred ---------------------------------------------------------------hhhhhhHHHHhccCCEE
Confidence 55666667788899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++
T Consensus 98 i~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~ 163 (191)
T 2a5j_A 98 LLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESR------------RDVKREEGEAFAREHG-LIFMET 163 (191)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCc------------cccCHHHHHHHHHHcC-CEEEEE
Confidence 9999999999999998 7999887764 58999999999999764 6788899999999998 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+.+++.+.++
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 164 SAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 41
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=4.8e-29 Score=205.70 Aligned_cols=165 Identities=22% Similarity=0.424 Sum_probs=145.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.++.+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++....+.+|||+|+
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 65 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL----------------- 65 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-----------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCc-----------------
Confidence 356799999999999999999999999998888999987764 47778888888999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++...+..+++++|+++
T Consensus 66 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 66 --------------------------------------------------------------ERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp --------------------------------------------------------------GGGGGGTHHHHTTCSEEE
T ss_pred --------------------------------------------------------------hhhhcccHhhCcCCCEEE
Confidence 556666677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc-CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH-CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+++.+. .|+..+... .+..|+++|+||+|+... +++..+++..+++.++ .+++++|
T Consensus 84 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 149 (170)
T 1z0j_A 84 IVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDV------------REVMERDAKDYADSIH-AIFVETS 149 (170)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECB
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999997 899998876 468999999999999765 6788899999999988 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.+.+.+.+
T Consensus 150 a~~~~~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 150 AKNAININELFIEISRRIPS 169 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCCC
T ss_pred CCCCcCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=3.1e-29 Score=208.59 Aligned_cols=164 Identities=24% Similarity=0.486 Sum_probs=144.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 74 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ------------------ 74 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC------------------
Confidence 4579999999999999999999999999888999988776 447778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 75 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 75 -------------------------------------------------------------ERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp -------------------------------------------------------------GGTCHHHHHHHHTCSEEEE
T ss_pred -------------------------------------------------------------hHhhhhHHHHhccCCEEEE
Confidence 5555666677889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+++++. .|+..+.... .+.|+++|+||+|+..+ +.+..++++++++.++ ++++++||
T Consensus 94 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 159 (179)
T 1z0f_A 94 VYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQ------------RDVTYEEAKQFAEENG-LLFLEASA 159 (179)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8998888765 68999999999999754 6788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+++++.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998875
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=5.8e-29 Score=206.89 Aligned_cols=166 Identities=30% Similarity=0.535 Sum_probs=141.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+||+++|++|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 66 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ----------------- 66 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 34678999999999999999999999999888899998766 457788888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++.+|+++
T Consensus 67 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 67 --------------------------------------------------------------ERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp --------------------------------------------------------------GGGHHHHGGGGTTCSEEE
T ss_pred --------------------------------------------------------------hhhhhhHHHHHhcCCEEE
Confidence 556666677888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+. . +.+..++++++++.....++
T Consensus 85 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~------------~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 85 LTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDIS-E------------RQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTTCS-S------------CSSCHHHHHHHHHHTTCCCE
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCccc-c------------cccCHHHHHHHHHhcCCceE
Confidence 999999999999997 8998887654 578999999999997 3 67888999999995555899
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+++.+++.
T Consensus 151 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999865
No 44
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.5e-29 Score=211.84 Aligned_cols=166 Identities=23% Similarity=0.454 Sum_probs=144.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.+||+++|++|+|||||+++|.++.+...+.++.+..+.. .+.+++....+.+|||+|+
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 82 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ------------------ 82 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS------------------
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc------------------
Confidence 457999999999999999999999999988889999877744 6777788888999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++.+|++++
T Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 83 -------------------------------------------------------------ERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp -------------------------------------------------------------GGGGGGTHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------hhhHhhhHHhhccCCEEEE
Confidence 5566666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++++++.++ ++++++||
T Consensus 102 V~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 167 (192)
T 2fg5_A 102 VYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDI------------REVPLKDAKEYAESIG-AIVVETSA 167 (192)
T ss_dssp EEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTTT-CEEEECBT
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8999988765 58999999999999754 6788899999999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+.+.+.+.+
T Consensus 168 ~~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 168 KNAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp TTTBSHHHHHHHHHHTCC---
T ss_pred CCCcCHHHHHHHHHHHHHhhC
Confidence 999999999999999887654
No 45
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-29 Score=216.30 Aligned_cols=168 Identities=27% Similarity=0.453 Sum_probs=138.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.+..+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 72 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ------------------ 72 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT------------------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45689999999999999999999999999888999987775 47788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++.+|++++
T Consensus 73 -------------------------------------------------------------~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 73 -------------------------------------------------------------ERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp -------------------------------------------------------------TTTTCCCGGGTTTCCEEEE
T ss_pred -------------------------------------------------------------cchhhhHHHHhccCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..+++..+++.++ ++|+++||
T Consensus 92 V~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 157 (223)
T 3cpj_B 92 VYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHL------------RAVPTEESKTFAQENQ-LLFTETSA 157 (223)
T ss_dssp EEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCC
T ss_pred EEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8999987764 57999999999999764 6788899999999987 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++|.|++++|+.+++.+.+....
T Consensus 158 ~~~~gi~~l~~~l~~~i~~~~~~ 180 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQKVSK 180 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTTCC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999876444
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9.4e-29 Score=206.20 Aligned_cols=166 Identities=28% Similarity=0.516 Sum_probs=139.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|.++.+. ..+.+|++..+.. .+.+++..+.+.+|||+|+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 70 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ----------------- 70 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 56799999999999999999999999885 5678888877754 5578888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++++|+++
T Consensus 71 --------------------------------------------------------------~~~~~~~~~~~~~~d~ii 88 (180)
T 2g6b_A 71 --------------------------------------------------------------ERFRSVTHAYYRDAHALL 88 (180)
T ss_dssp ----------------------------------------------------------------------CCGGGCSEEE
T ss_pred --------------------------------------------------------------HHHHHHHHHHccCCCEEE
Confidence 555566677888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+++++. .|+..+.... .+.|+++|+||+|+..+ +.+..++++.+++.++ ++++++|
T Consensus 89 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 154 (180)
T 2g6b_A 89 LLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHE------------RVVKREDGEKLAKEYG-LPFMETS 154 (180)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTSC------------CCSCHHHHHHHHHHHT-CCEEECC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCcc------------cccCHHHHHHHHHHcC-CeEEEEe
Confidence 999999999999998 8999888765 58999999999999865 7788899999999988 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~ 319 (330)
|++|.|++++|+.+.+.+.+..
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987643
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=2.7e-29 Score=207.35 Aligned_cols=163 Identities=27% Similarity=0.369 Sum_probs=129.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||+++|.+..+...+.++.+ +.+...+.+++..+.+.+|||+|++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------------------- 62 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG------------------- 62 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCcc-------------------
Confidence 47999999999999999999998777655555554 4445677888989999999999983
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccc-ccCccccCCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDR-LRPLSYPQTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~-~~~~~~~~~d~~ilv 220 (330)
.+.. ++..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 63 ------------------------------------------------------------DAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp -------------------------------------------------------------------CHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------ccchhhhhhhhccCCEEEEE
Confidence 3332 455567789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++++|+.+. .|+..+..... ++|+++|+||+|+... +.+..++++.+++.++ ++|+++||
T Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 148 (169)
T 3q85_A 83 FSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARS------------REVSLEEGRHLAGTLS-CKHIETSA 148 (169)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECBT
T ss_pred EECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchhhc------------ccCCHHHHHHHHHHcC-CcEEEecC
Confidence 9999999999998 89888877654 8999999999999765 7899999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+..+
T Consensus 149 ~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988653
No 48
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.2e-28 Score=199.32 Aligned_cols=167 Identities=30% Similarity=0.516 Sum_probs=137.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+++||+++|++|||||||+.++..+.+...+.+|++..+ ...+.
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 46 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVT---------------------------------- 46 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEE----------------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEE----------------------------------
Confidence 7899999999999999999999999999888888875333 22222
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+++..+.+.+|||+|+
T Consensus 47 --------------------------~~~~~~~~~~~D~~G~-------------------------------------- 62 (170)
T 1ek0_A 47 --------------------------INEHTVKFEIWDTAGQ-------------------------------------- 62 (170)
T ss_dssp --------------------------ETTEEEEEEEEEECCS--------------------------------------
T ss_pred --------------------------ECCEEEEEEEEECCCC--------------------------------------
Confidence 2334455677788887
Q ss_pred CcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhh
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE 239 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 239 (330)
+++...+..+++++|++++|||++++.+++++. .|+..
T Consensus 63 -----------------------------------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~ 100 (170)
T 1ek0_A 63 -----------------------------------------ERFASLAPXYYRNAQAALVVYDVTKPQSFIKAR-HWVKE 100 (170)
T ss_dssp -----------------------------------------GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHH-HHHHH
T ss_pred -----------------------------------------hhhhhhhhhhhccCcEEEEEEecCChHHHHHHH-HHHHH
Confidence 556666677888999999999999999999998 79988
Q ss_pred hhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 240 ITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 240 i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+.... .+.|+++|+||+|+... ...+.+..++++.+++.++ ++++++||++|.|++++|+.+.+.+.+
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~---------~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 101 LHEQASKDIIIALVGNKIDXLQE---------GGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGS---------SCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred HHHhcCCCCcEEEEEECCCcccc---------ccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 87765 68999999999999754 2236788899999999988 699999999999999999999887754
No 49
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=4.9e-29 Score=210.92 Aligned_cols=168 Identities=27% Similarity=0.520 Sum_probs=148.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 75 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ------------------ 75 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45789999999999999999999999999999999876664 57888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 76 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 76 -------------------------------------------------------------ERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp -------------------------------------------------------------GGGCTTHHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HhhhhhHHHHHhhCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++|+++||
T Consensus 95 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (196)
T 3tkl_A 95 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA 160 (196)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEEECT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc------------cccCHHHHHHHHHHcC-CcEEEEeC
Confidence 99999999999998 7999887765 57999999999999765 7888899999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
++|.|++++|+.+++.+.+...+
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998865443
No 50
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=2.4e-29 Score=210.74 Aligned_cols=166 Identities=32% Similarity=0.560 Sum_probs=146.4
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+..+||+++|++|+|||||+++|.+..+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 76 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ----------------- 76 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCT-----------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCC-----------------
Confidence 346789999999999999999999999999999999999888888888888899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++.+|+++
T Consensus 77 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 77 --------------------------------------------------------------EDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --------------------------------------------------------------TCCHHHHHHHHHHCSEEE
T ss_pred --------------------------------------------------------------cccHHHHHHHhccCCEEE
Confidence 445555666788899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+|+.+. .|+..+..... ++|+++|+||+|+... +.+..++++.+++.++ ++++++
T Consensus 95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 160 (187)
T 2a9k_A 95 CVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK------------RQVSVEEAKNRAEQWN-VNYVET 160 (187)
T ss_dssp EEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------CccCHHHHHHHHHHcC-CeEEEe
Confidence 999999999999998 89888877654 8999999999999765 6788899999999988 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+++.+.+
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 161 SAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 51
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=5.4e-29 Score=209.91 Aligned_cols=164 Identities=29% Similarity=0.517 Sum_probs=144.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 81 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ------------------ 81 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSC------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCc------------------
Confidence 35689999999999999999999999998888899887764 46777888889999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 82 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 82 -------------------------------------------------------------ERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp -------------------------------------------------------------CSSCCSGGGGGTTCSEEEE
T ss_pred -------------------------------------------------------------HHHhhhHHHhccCCCEEEE
Confidence 5555666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 101 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 166 (189)
T 2gf9_A 101 MYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDE------------RVVPAEDGRRLADDLG-FEFFEASA 166 (189)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc------------cCCCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999998 8999988765 68999999999999764 6788899999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 167 ~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 167 KENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=3.1e-29 Score=210.42 Aligned_cols=165 Identities=24% Similarity=0.470 Sum_probs=145.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 69 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ------------------ 69 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4579999999999999999999999999888889988666 457778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 70 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 88 (186)
T 2bme_A 70 -------------------------------------------------------------ERFRSVTRSYYRGAAGALL 88 (186)
T ss_dssp -------------------------------------------------------------GGGHHHHHTTSTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhcCCEEEE
Confidence 5566666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..+++..+++..+ ++++++||
T Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 154 (186)
T 2bme_A 89 VYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD------------REVTFLEASRFAQENE-LMFLETSA 154 (186)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECCT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEecC
Confidence 99999999999998 8998887654 68999999999999754 6788899999999987 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 155 LTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 53
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=5.2e-29 Score=207.25 Aligned_cols=166 Identities=29% Similarity=0.511 Sum_probs=144.0
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
.+++.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~---------------- 73 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ---------------- 73 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCc----------------
Confidence 356789999999999999999999999999988889987655 557788888889999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+...+..+++++|++
T Consensus 74 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 74 ---------------------------------------------------------------ERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp ---------------------------------------------------------------GGGGGGSHHHHHTCSEE
T ss_pred ---------------------------------------------------------------HHHHHHHHHHhcCCCEE
Confidence 55556666778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++..+ ++++++
T Consensus 91 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 156 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK------------RQVSTEEGERKAKELN-VMFIET 156 (179)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEEE
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc------------CcCCHHHHHHHHHHcC-CeEEEE
Confidence 9999999999999998 8988887654 58999999999999765 6788899999999988 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+.+.+.+
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987754
No 54
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=2.1e-28 Score=200.96 Aligned_cols=163 Identities=31% Similarity=0.551 Sum_probs=135.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.++..+.+...+.+|+.+.+...+.+
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 46 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV---------------------------------- 46 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEE----------------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEE----------------------------------
Confidence 8999999999999999999999999999888888875444333332
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
++....+.+|||+|+
T Consensus 47 --------------------------~~~~~~~~l~D~~G~--------------------------------------- 61 (167)
T 1kao_A 47 --------------------------DSSPSVLEILDTAGT--------------------------------------- 61 (167)
T ss_dssp --------------------------TTEEEEEEEEECCCT---------------------------------------
T ss_pred --------------------------CCEEEEEEEEECCCc---------------------------------------
Confidence 334455667788887
Q ss_pred cceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhh
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i 240 (330)
+.+..++..+++++|++++|||++++.+++.+. .|+..+
T Consensus 62 ----------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~i 100 (167)
T 1kao_A 62 ----------------------------------------EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK-PMRDQI 100 (167)
T ss_dssp ----------------------------------------TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHH-HHHHHH
T ss_pred ----------------------------------------hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHH-HHHHHH
Confidence 555556666788899999999999999999998 788887
Q ss_pred hhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 241 THHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 241 ~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.... .+.|+++|+||+|+... +++..++++.+++.++ ++++++||++|.|++++|+.+++.+.
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 101 IRVKRYEKVPVILVGNKVDLESE------------REVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHTTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCEEEEEECCccccc------------ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 6654 58999999999999754 6788899999999987 69999999999999999999988764
No 55
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=8.8e-29 Score=211.47 Aligned_cols=163 Identities=26% Similarity=0.528 Sum_probs=144.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 67 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ------------------ 67 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTT------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCCh------------------
Confidence 45689999999999999999999999999999999987774 47788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++..++..+++.+|++++
T Consensus 68 -------------------------------------------------------------~~~~~~~~~~~~~~d~vil 86 (206)
T 2bcg_Y 68 -------------------------------------------------------------ERFRTITSSYYRGSHGIII 86 (206)
T ss_dssp -------------------------------------------------------------TTTTCCCGGGGTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHhccCCCEEEE
Confidence 5556666778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+..+ +.+..+++..+++.++ ++++++||
T Consensus 87 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 152 (206)
T 2bcg_Y 87 VYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK------------RVVEYDVAKEFADANK-MPFLETSA 152 (206)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT------------CCSCHHHHHHHHHHTT-CCEEECCT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEeC
Confidence 99999999999998 7999887765 67999999999999765 6788899999999988 69999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 153 ~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 153 LDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999998875
No 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=7e-29 Score=209.20 Aligned_cols=168 Identities=33% Similarity=0.539 Sum_probs=139.4
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
..+|+.+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 79 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ---------------- 79 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCCh----------------
Confidence 4568889999999999999999999999999888999998888888888888889999999998
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+...+..+++.+|++
T Consensus 80 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 80 ---------------------------------------------------------------EEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -------------------------------------------------------------------------CTTCSEE
T ss_pred ---------------------------------------------------------------HHHHHHHHHhhCcCCEE
Confidence 55556667788899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+++++. .|+..+.... .++|+++|+||+|+.. +.+..++++++++.++ +++++
T Consensus 97 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~ 161 (190)
T 3con_A 97 LCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT-------------RTVDTKQAHELAKSYG-IPFIE 161 (190)
T ss_dssp EEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCc-------------ccCCHHHHHHHHHHcC-CeEEE
Confidence 9999999999999997 8988887764 4799999999999964 4567889999999998 69999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+||++|.|++++|+.+++.+.+.+
T Consensus 162 ~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 162 TSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543
No 57
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.3e-30 Score=215.74 Aligned_cols=166 Identities=27% Similarity=0.490 Sum_probs=146.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||+|+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 82 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ------------------ 82 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH------------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh------------------
Confidence 45689999999999999999999999998888888877664 47777888888888888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 83 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 83 -------------------------------------------------------------ERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp -------------------------------------------------------------HHCHHHHHHHHTTCCEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHccCCEEEE
Confidence 6666677778899999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 102 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 167 (191)
T 3dz8_A 102 MYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEE------------RVVPTEKGQLLAEQLG-FDFFEASA 167 (191)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999998 7999998865 68999999999999765 7889999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+++.+.+..
T Consensus 168 ~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 168 KENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp TTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987643
No 58
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=6.2e-29 Score=212.11 Aligned_cols=165 Identities=24% Similarity=0.304 Sum_probs=107.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeec-ceEEEEECCc--eeeeeeeecCCCccccccCCCCCCCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDN-YAVTVMIGGE--PYTLGLFDTAGQEDYDRLRPLSYPQT 135 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~-~~~~~~~~~~--~~~l~i~Dt~g~~~~~~l~~~~~~~~ 135 (330)
...+||+++|++|||||||+++|.+. .+...+.+|++.. +...+.+++. .+.+.+|||+|+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------- 83 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS-------------- 83 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT--------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc--------------
Confidence 46789999999999999999999999 8888899999744 4567788877 888899999888
Q ss_pred ceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCC
Q psy9997 136 DVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTD 215 (330)
Q Consensus 136 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d 215 (330)
+.+...+..+++++|
T Consensus 84 -----------------------------------------------------------------~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 84 -----------------------------------------------------------------DLYKEQISQYWNGVY 98 (208)
T ss_dssp -----------------------------------------------------------------HHHHHHHSTTCCCCC
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHhhCc
Confidence 666667778889999
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCC----CCcEEEEEeccCCCC-CchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQ----KTPFLLVGTQIDLRE-DAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilV~nK~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
++++|||++++.+|+.+. .|+..+..... ++|+++|+||+|+.. . +.+..+++..+++.++
T Consensus 99 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~------------~~v~~~~~~~~~~~~~- 164 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQR------------HQVRLDMAQDWATTNT- 164 (208)
T ss_dssp EEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-------------------CCCHHHHHHHHHHTT-
T ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEECcccchhh------------ccCCHHHHHHHHHHcC-
Confidence 999999999999999998 89999887754 899999999999976 4 7788999999999998
Q ss_pred eeEEEEeecc-CCCHHHHHHHHHHHhcCC
Q psy9997 291 VKYVECSALT-QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 ~~~~e~Sa~~-~~~v~~~f~~l~~~i~~~ 318 (330)
++++++||++ |.|++++|+.+++.+.+.
T Consensus 165 ~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 165 LDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp CEEEECCC-------CHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 7999999999 999999999999988643
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=5.9e-29 Score=205.18 Aligned_cols=163 Identities=29% Similarity=0.580 Sum_probs=136.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 62 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ------------------- 62 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG-------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCC-------------------
Confidence 3689999999999999999999999998888899887664 47777888888888888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 63 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 63 ------------------------------------------------------------ERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp ------------------------------------------------------------GGTSCCCHHHHTTEEEEEEE
T ss_pred ------------------------------------------------------------hhhhhhHHHHhccCCEEEEE
Confidence 55566667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++.++++.++ ++++++||+
T Consensus 83 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 147 (170)
T 1g16_A 83 YDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET-------------RVVTADQGEALAKELG-IPFIESSAK 147 (170)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-------------CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-------------CccCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999998 8998888765 5899999999999932 6678889999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.|++++|+.+.+.+.++
T Consensus 148 ~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 60
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=214.09 Aligned_cols=171 Identities=23% Similarity=0.440 Sum_probs=135.0
Q ss_pred EeecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCC
Q psy9997 55 LNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYP 133 (330)
Q Consensus 55 ~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~ 133 (330)
.+.......+||+++|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------ 84 (200)
T 2o52_A 17 RGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ------------ 84 (200)
T ss_dssp -----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTH------------
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCc------------
Confidence 3444445679999999999999999999999999888889888666 447778888888888998888
Q ss_pred CCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC
Q psy9997 134 QTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ 213 (330)
Q Consensus 134 ~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~ 213 (330)
+.+..++..+++.
T Consensus 85 -------------------------------------------------------------------~~~~~~~~~~~~~ 97 (200)
T 2o52_A 85 -------------------------------------------------------------------ERFRSVTRSYYRG 97 (200)
T ss_dssp -------------------------------------------------------------------HHHSCCCHHHHTT
T ss_pred -------------------------------------------------------------------HhHHHHHHHHhcc
Confidence 5666667778889
Q ss_pred CCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 214 TDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 214 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
+|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+..+ +.+..+++..+++..+ ++
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~ 163 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPE------------REVTFLEASRFAQENE-LM 163 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CE
T ss_pred CCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CE
Confidence 99999999999999999998 8998887754 68999999999999754 6788899999999987 79
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
|+++||++|.|++++|+.+++.+.+.
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=212.37 Aligned_cols=165 Identities=25% Similarity=0.501 Sum_probs=136.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~------------------ 85 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ------------------ 85 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc------------------
Confidence 4579999999999999999999999999888888887655 457778888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 86 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 104 (192)
T 2il1_A 86 -------------------------------------------------------------ERFNSITSAYYRSAKGIIL 104 (192)
T ss_dssp -------------------------------------------------------------GGGHHHHHHHHHHCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHhcCCCEEEE
Confidence 5555566667889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+++. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++..+++++||
T Consensus 105 V~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~~~~SA 171 (192)
T 2il1_A 105 VYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD------------REITRQQGEKFAQQITGMRFCEASA 171 (192)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHhcCCCeEEEEeC
Confidence 99999999999998 8988887765 47999999999999765 7788899999999864579999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 172 ~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 172 KDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 62
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.96 E-value=9.8e-29 Score=202.55 Aligned_cols=163 Identities=34% Similarity=0.566 Sum_probs=143.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
|+.+||+++|++|+|||||++++.++.+...+.++.+..+...+..++..+.+.+||++|+
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------------------- 61 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------- 61 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 5678999999999999999999999999888999998888888888888899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++.+|++++|
T Consensus 62 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 62 ------------------------------------------------------------EEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp ------------------------------------------------------------SSCCHHHHHHHHHCSEEEEE
T ss_pred ------------------------------------------------------------hhhhHHHHHhhccCCEEEEE
Confidence 44455556677889999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCC--CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQ--KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
||++++.+++.+. .|+..+..... +.|+++|+||+|+.. +.+..++++++++.++ ++++++||
T Consensus 82 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~Sa 146 (166)
T 2ce2_X 82 FAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAA-------------RTVESRQAQDLARSYG-IPYIETSA 146 (166)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-------------CCSCHHHHHHHHHHHT-CCEEEECT
T ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhh-------------cccCHHHHHHHHHHcC-CeEEEecC
Confidence 9999999999997 89988877653 899999999999965 4567888999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+.+.+.+
T Consensus 147 ~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 147 KTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp TTCTTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 63
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.4e-28 Score=207.76 Aligned_cols=166 Identities=27% Similarity=0.564 Sum_probs=146.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.+..+||+++|++|+|||||+++|.+..+...+.+|.+..+ ...+.+++..+.+.+|||+|+
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 74 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ----------------- 74 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS-----------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc-----------------
Confidence 35679999999999999999999999999989999987766 457788888899999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+..++..+++.+|+++
T Consensus 75 --------------------------------------------------------------~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 75 --------------------------------------------------------------ERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp --------------------------------------------------------------GGGCCSHHHHHTTCCEEE
T ss_pred --------------------------------------------------------------hhhhhhhHHHhccCCEEE
Confidence 555666677788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.. +.+..+++..+++.++ ++|+++
T Consensus 93 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~-~~~~~~ 157 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN-------------REVDRNEGLKFARKHS-MLFIEA 157 (195)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS-------------CCSCHHHHHHHHHHTT-CEEEEC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc-------------cccCHHHHHHHHHHcC-CEEEEe
Confidence 999999999999998 8999988764 5799999999999943 6678889999999987 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
||++|.|++++|+.+++.+.+.+
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999998653
No 64
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=6.3e-29 Score=209.54 Aligned_cols=165 Identities=26% Similarity=0.463 Sum_probs=140.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.++.+||+++|++|+|||||+++|.++.+...+.++++..+ ...+.+++..+.+.+|||+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 79 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------------- 79 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS-----------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc-----------------
Confidence 35679999999999999999999999999988899998766 457788888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~ 217 (330)
+++. .++..+++++|++
T Consensus 80 --------------------------------------------------------------~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 80 --------------------------------------------------------------ERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp --------------------------------------------------------------HHHHTTTHHHHHTTCCEE
T ss_pred --------------------------------------------------------------hhhhhhhhHHHhcCCCEE
Confidence 5554 5566678899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++|||++++.+|+.+. .|+.++.... .+.|+++|+||+|+... +++..++++.+++.++ ++|++
T Consensus 98 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~ 163 (189)
T 1z06_A 98 VFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSA------------IQVPTDLAQKFADTHS-MPLFE 163 (189)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CCEEE
T ss_pred EEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------ceeCHHHHHHHHHHcC-CEEEE
Confidence 9999999999999998 7999887764 68999999999999764 6788899999999988 69999
Q ss_pred EeeccC---CCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQ---KGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~---~~v~~~f~~l~~~i~~ 317 (330)
+||++| .|++++|+.+++.+.+
T Consensus 164 ~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 164 TSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp CCSSSGGGGSCHHHHHHHHC-----
T ss_pred EeCCcCCcccCHHHHHHHHHHHHhh
Confidence 999999 9999999999887643
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-28 Score=210.05 Aligned_cols=163 Identities=27% Similarity=0.510 Sum_probs=144.6
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|||||||+++|.+..+...+.+|.+..+. ..+..++..+.+.+|||+|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------- 67 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL------------------- 67 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS-------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc-------------------
Confidence 4689999999999999999999999998888999987664 57778888889999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 68 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 68 ------------------------------------------------------------ERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp ------------------------------------------------------------GGGHHHHHTTGGGCSEEEEE
T ss_pred ------------------------------------------------------------hhhcchHHHhhcCCCEEEEE
Confidence 55556667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++||+
T Consensus 88 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (203)
T 1zbd_A 88 YDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDE------------RVVSSERGRQLADHLG-FEFFEASAK 153 (203)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTS------------CCSCHHHHHHHHHHHT-CEEEECBTT
T ss_pred EECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCcc------------cccCHHHHHHHHHHCC-CeEEEEECC
Confidence 9999999999998 8999987765 58999999999999765 6788899999999998 699999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+++.+.+
T Consensus 154 ~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988764
No 66
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.7e-29 Score=212.26 Aligned_cols=165 Identities=30% Similarity=0.464 Sum_probs=144.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
....+||+++|++|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||+|+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 86 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ------------------ 86 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCC------------------
Confidence 35679999999999999999999999999999999999888888888999999999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+. ...+..+++.+|++++
T Consensus 87 -------------------------------------------------------------~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 87 -------------------------------------------------------------ED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -------------------------------------------------------------CC-CHHHHHHHHHCSEEEE
T ss_pred -------------------------------------------------------------Cc-ccchhhhhccCCEEEE
Confidence 22 3344556788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
|||++++++|+.+. .|+..+.... .++|+++|+||+|+... +.+..+++..+++.++ ++|+++|
T Consensus 105 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~S 170 (196)
T 2atv_A 105 VYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHS------------RQVSTEEGEKLATELA-CAFYECS 170 (196)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-SEEEECC
T ss_pred EEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHhC-CeEEEEC
Confidence 99999999999998 7988887753 58999999999999765 7788999999999997 7999999
Q ss_pred eccCC-CHHHHHHHHHHHhcCC
Q psy9997 298 ALTQK-GLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~-~v~~~f~~l~~~i~~~ 318 (330)
|++|. |++++|+.+++.+.+.
T Consensus 171 a~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 171 ACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp TTTCTTCHHHHHHHHHHHHHHH
T ss_pred CCcCCcCHHHHHHHHHHHHHhh
Confidence 99999 9999999999988653
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.8e-29 Score=205.03 Aligned_cols=163 Identities=26% Similarity=0.470 Sum_probs=141.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..+||+++|++|+|||||+++|.++.+...+.+|.+..+...+..++..+.+.+|||+|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~-------------------- 61 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS-------------------- 61 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSC--------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCc--------------------
Confidence 468999999999999999999999999888899998888777788888888999999998
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..+++.+|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 62 -----------------------------------------------------------HQFPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp -----------------------------------------------------------SSCHHHHHHHHHHCSEEEEEE
T ss_pred -----------------------------------------------------------hhhHHHHHHhcccCCEEEEEE
Confidence 444555566778899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|++++.+++.+. .|+..+.+.. ++.|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 83 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa 148 (172)
T 2erx_A 83 SITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPS------------REVQSSEAEALARTWK-CAFMETSA 148 (172)
T ss_dssp ETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGGG------------CCSCHHHHHHHHHHHT-CEEEECBT
T ss_pred ECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEccccccc------------cccCHHHHHHHHHHhC-CeEEEecC
Confidence 999999999988 7887776653 57999999999999765 6778888999999987 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+++++.+.+
T Consensus 149 ~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 149 KLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TTTBSHHHHHHHHHHTCCS
T ss_pred CCCcCHHHHHHHHHHHHhh
Confidence 9999999999999987654
No 68
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=1.2e-27 Score=202.67 Aligned_cols=100 Identities=23% Similarity=0.409 Sum_probs=86.1
Q ss_pred ccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH
Q psy9997 206 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK 283 (330)
Q Consensus 206 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 283 (330)
+++.+++.+|++++|||+++++||+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl~~~------------r~v~~~~~~~ 139 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRX------------REVSVSEGRA 139 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTCGGG------------CCSCHHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhhhcc------------ccccHHHHHH
Confidence 4566778899999999999999999998 7887776642 57999999999999754 7788889999
Q ss_pred HHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 284 LAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 284 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++..++ ++|+|+||++|.||+++|+.+++.+....
T Consensus 140 ~a~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 140 XAVVFD-XKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 998887 69999999999999999999999886443
No 69
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=207.52 Aligned_cols=166 Identities=25% Similarity=0.442 Sum_probs=145.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+.+++..+.+.+|||+|+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------------- 84 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL----------------- 84 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCC-----------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCc-----------------
Confidence 345799999999999999999999999998888899887764 47777888889999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 85 --------------------------------------------------------------~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 85 --------------------------------------------------------------ERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp --------------------------------------------------------------CTTCTTHHHHHTTCCEEE
T ss_pred --------------------------------------------------------------hhhhhhhHHHhccCCEEE
Confidence 555566667788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++..+ ++++++|
T Consensus 103 ~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 168 (193)
T 2oil_A 103 LVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQA------------REVPTEEARMFAENNG-LLFLETS 168 (193)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEEEC
T ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCcccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999998 8998887764 58999999999999765 6788899999999987 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+.+++.++++
T Consensus 169 a~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988653
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=6.7e-29 Score=211.27 Aligned_cols=170 Identities=29% Similarity=0.456 Sum_probs=134.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.+...+.+|.+..+. ..+.+++..+.+.+|||+|+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------ 87 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ------------------ 87 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC------------------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC------------------
Confidence 45799999999999999999999999998888899987774 57888888899999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 88 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 88 -------------------------------------------------------------ERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -------------------------------------------------------------TTCHHHHHHHHHHCSEEEE
T ss_pred -------------------------------------------------------------cchhhhHHHHHhhCCEEEE
Confidence 5555556667888999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+++. .|+..+.... .+.|+++|+||+|+.... .....+.+..++++.+++.++ ++|+++||
T Consensus 107 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~~------~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA 178 (199)
T 2p5s_A 107 LYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTA------ATEGQKCVPGHFGEKLAMTYG-ALFCETSA 178 (199)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHHH------HHTTCCCCCHHHHHHHHHHHT-CEEEECCT
T ss_pred EEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccccccc------ccccccccCHHHHHHHHHHcC-CeEEEeeC
Confidence 99999999999998 8998887764 579999999999996321 112347788999999999998 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+++.+.+
T Consensus 179 ~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 179 KDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998864
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=1.2e-28 Score=205.70 Aligned_cols=167 Identities=31% Similarity=0.535 Sum_probs=130.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.++ +....+.+|||+|+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------------- 68 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ----------------- 68 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC-----------------
Confidence 45789999999999999999999999998888898876654 456665 55677788888877
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+.+...+..+++.+|+++
T Consensus 69 --------------------------------------------------------------~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 69 --------------------------------------------------------------ERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp ----------------------------------------------------------------------CCSTTCCEEE
T ss_pred --------------------------------------------------------------hHhhhhhHHHhhcCCEEE
Confidence 666666777888999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... .+.+..++++.+++..+..++
T Consensus 87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----------~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 87 LVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-----------GCCSCHHHHHHHHHHTTSCCE
T ss_pred EEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECCccccc-----------cccCCHHHHHHHHHhcCCCeE
Confidence 999999999999998 8988887654 57899999999999643 156788999999986555899
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+++.++++
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=8.2e-29 Score=208.74 Aligned_cols=167 Identities=27% Similarity=0.461 Sum_probs=141.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce--EEEEECCc---------eeeeeeeecCCCccccccC
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA--VTVMIGGE---------PYTLGLFDTAGQEDYDRLR 128 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~Dt~g~~~~~~l~ 128 (330)
....+||+++|++|+|||||+++|.++.+...+.+|++..+. ..+..++. .+.+.+|||+|+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------- 80 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL------- 80 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS-------
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc-------
Confidence 345799999999999999999999999998888899887765 34555544 456666666666
Q ss_pred CCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC
Q psy9997 129 PLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP 208 (330)
Q Consensus 129 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~ 208 (330)
+.+...+.
T Consensus 81 ------------------------------------------------------------------------~~~~~~~~ 88 (195)
T 3bc1_A 81 ------------------------------------------------------------------------ERFRSLTT 88 (195)
T ss_dssp ------------------------------------------------------------------------GGGHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 66777777
Q ss_pred ccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH
Q psy9997 209 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK 286 (330)
Q Consensus 209 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 286 (330)
.+++++|++++|||++++.+++.+. .|+..+.... .++|+++|+||+|+..+ +.+..++++.+++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~ 155 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQ------------RAVKEEEARELAE 155 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEEEEEECTTCGGG------------CCSCHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc------------cccCHHHHHHHHH
Confidence 7889999999999999999999998 8999888765 58999999999999764 6788899999999
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.++ ++++++||++|.|++++|+.+.+.+.++.
T Consensus 156 ~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 156 KYG-IPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HcC-CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 998 69999999999999999999999887543
No 73
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.4e-30 Score=221.01 Aligned_cols=177 Identities=72% Similarity=1.218 Sum_probs=148.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|+|||||+++|.++.+...+.+|.++.+...+.+++..+.+.+|||+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 88 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ------------------- 88 (204)
Confidence 5679999999999999999999999999889999998888777777777778888888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 89 ------------------------------------------------------------~~~~~~~~~~~~~~d~iilv 108 (204)
T 3th5_A 89 ------------------------------------------------------------EDYDRLRPLSYPQTDVFLIC 108 (204)
Confidence 66666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+|+++...|+..+....++.|+++|+||+|+.......+.......+.+..+++..+++.++..+|+++||++
T Consensus 109 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~ 188 (204)
T 3th5_A 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 188 (204)
Confidence 99999999999876799888887778999999999999765332222222333577888899999998844899999999
Q ss_pred CCCHHHHHHHHHHHhc
Q psy9997 301 QKGLKNVFDEAILAAL 316 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~ 316 (330)
|.|++++|+.+++.++
T Consensus 189 g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 189 QRGLKTVFDEAIRAVL 204 (204)
Confidence 9999999999987763
No 74
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=4.9e-28 Score=221.59 Aligned_cols=178 Identities=70% Similarity=1.213 Sum_probs=156.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+||+++|++|+|||||+++|..+.+...+.+|+++.+...+.+++..+.+.+|||+|+
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--------------------- 213 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--------------------- 213 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCC---------------------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCc---------------------
Confidence 48999999999999999999999999999999999998888889999999999999998
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 222 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d 222 (330)
+.+...+..+++++|++++|||
T Consensus 214 ----------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d 235 (332)
T 2wkq_A 214 ----------------------------------------------------------EDYDRLRPLSYPQTDVFLICFS 235 (332)
T ss_dssp ----------------------------------------------------------GGGTTTGGGGCTTCSEEEEEEE
T ss_pred ----------------------------------------------------------hhhhHHHHHhccCCCEEEEEEe
Confidence 5566667778889999999999
Q ss_pred cCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCC
Q psy9997 223 VVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQK 302 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 302 (330)
++++.+|+++...|+..+.....++|+++|+||+|+...............+.+..+++..+++.++..+|+++||++|.
T Consensus 236 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 315 (332)
T 2wkq_A 236 LVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 315 (332)
T ss_dssp TTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 99999999997679999888777999999999999976544444444555688999999999999985599999999999
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy9997 303 GLKNVFDEAILAALEPP 319 (330)
Q Consensus 303 ~v~~~f~~l~~~i~~~~ 319 (330)
|++++|+.+++.+++++
T Consensus 316 gi~~l~~~l~~~~~~~~ 332 (332)
T 2wkq_A 316 GLKTVFDEAIRAVLCPP 332 (332)
T ss_dssp THHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999999999998753
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=1.5e-28 Score=207.76 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=89.2
Q ss_pred cccccccCccccCCCEEEEEEEcC------ChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVV------SPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~ 274 (330)
+++..++..+++++|++++|||++ +.++|+.+. .|+.++.....++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~~~~piilv~NK~Dl~~-------------- 149 (198)
T 3t1o_A 85 VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTLDDVPIVIQVNKRDLPD-------------- 149 (198)
T ss_dssp CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCTTSSCEEEEEECTTSTT--------------
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHH-HHHHhhccccCCCCEEEEEEchhccc--------------
Confidence 566666777888999999999999 678888887 79988866668999999999999964
Q ss_pred CcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 275 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
.+..++++++++.++..+|+++||++|.|++++|+.+++.+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 150 ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 378889999999988449999999999999999999999887643
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=8.5e-28 Score=205.14 Aligned_cols=164 Identities=27% Similarity=0.528 Sum_probs=141.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.+|++..+ ...+.+++..+.+.+|||+|+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 67 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ------------------ 67 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSS------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 4578999999999999999999999999989999987665 447777888888999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+..++..+++++|++++
T Consensus 68 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 68 -------------------------------------------------------------ERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp -------------------------------------------------------------GGGSCSCCGGGTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHhHHHHHhCCcEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYV 294 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 294 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.. +.+..+++..+++.....+++
T Consensus 87 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------~~~~~~~~~~~~~~~~~~~~~ 152 (207)
T 1vg8_A 87 VFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPYF 152 (207)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-------------CCSCHHHHHHHHHHTTSCCEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCCCcc-------------cccCHHHHHHHHHhcCCceEE
Confidence 99999999999997 8988877654 4789999999999973 667888899999854457999
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++||++|.|++++|+.+++.+.+
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988763
No 77
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=2.2e-28 Score=210.72 Aligned_cols=164 Identities=29% Similarity=0.502 Sum_probs=139.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCc----------eeeeeeeecCCCccccccCC
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGE----------PYTLGLFDTAGQEDYDRLRP 129 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~----------~~~l~i~Dt~g~~~~~~l~~ 129 (330)
...+||+++|++|||||||+++|.+..+...+.+|++..+. ..+.+++. .+.+.+|||+|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------- 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-------- 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc--------
Confidence 45799999999999999999999999998888888876664 35555554 455555565555
Q ss_pred CCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc
Q psy9997 130 LSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL 209 (330)
Q Consensus 130 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~ 209 (330)
+++...+..
T Consensus 95 -----------------------------------------------------------------------~~~~~~~~~ 103 (217)
T 2f7s_A 95 -----------------------------------------------------------------------ERFRSLTTA 103 (217)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HhHHhHHHH
Confidence 777777778
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+++.+|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+... +.+..++++.+++.
T Consensus 104 ~~~~~d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~------------~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 104 FFRDAMGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQ------------REVNERQARELADK 170 (217)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEEEEEECTTCGGG------------CCSCHHHHHHHHHH
T ss_pred HhcCCCEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEEEEEECCccccc------------cccCHHHHHHHHHH
Confidence 889999999999999999999998 8998887765 68999999999999764 67888999999999
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++ ++++++||++|.|++++|+.+++.+.+
T Consensus 171 ~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 171 YG-IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TT-CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CC-CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 88 699999999999999999999988865
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=6.9e-28 Score=204.56 Aligned_cols=198 Identities=19% Similarity=0.322 Sum_probs=142.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+||+++|++|+|||||+++|++..+...+.+|++..+.. .+.+++.........+... .+... ... ....
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~--~~~~ 78 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN----NINSI-NDD--NNVI 78 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC--------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccc----ccccc-ccc--cccc
Confidence 46899999999999999999999999999999998776643 5555543322111111000 00000 000 0000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
. ....+ ..........+.+||++|++.+...+..+++.+|++++|
T Consensus 79 ~---------------------------------~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 123 (208)
T 3clv_A 79 I---------------------------------TNQHN--NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVV 123 (208)
T ss_dssp -----------------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEE
T ss_pred c---------------------------------ccccc--cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 0 00000 000112235678999999999999999999999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
||++++.+++.+. .|+..+..... .|+++|+||+| ... +.+..++++++++.++ ++++++||++
T Consensus 124 ~D~~~~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D-~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 187 (208)
T 3clv_A 124 FDISNSNTLDRAK-TWVNQLKISSN-YIIILVANKID-KNK------------FQVDILEVQKYAQDNN-LLFIQTSAKT 187 (208)
T ss_dssp EETTCHHHHHHHH-HHHHHHHHHSC-CEEEEEEECTT-CC-------------CCSCHHHHHHHHHHTT-CEEEEECTTT
T ss_pred EECCCHHHHHHHH-HHHHHHHhhCC-CcEEEEEECCC-ccc------------ccCCHHHHHHHHHHcC-CcEEEEecCC
Confidence 9999999999998 89999887654 99999999999 333 6788899999999987 6999999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+++++.+.+
T Consensus 188 ~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 188 GTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=4e-29 Score=212.69 Aligned_cols=165 Identities=27% Similarity=0.521 Sum_probs=135.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 92 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ------------------ 92 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTC------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCc------------------
Confidence 45799999999999999999999999998888888877664 57788888889999999998
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++++|++++
T Consensus 93 -------------------------------------------------------------~~~~~~~~~~~~~~d~~i~ 111 (199)
T 3l0i_B 93 -------------------------------------------------------------ERFRTITSSYYRGAHGIIV 111 (199)
T ss_dssp -------------------------------------------------------------TTCCCCSCC--CCCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHhhcCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... +.+..++++.+++.++ ++++++||
T Consensus 112 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSA 177 (199)
T 3l0i_B 112 VYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK------------KVVDYTTAKEFADSLG-IPFLETSA 177 (199)
T ss_dssp CC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--------------CCCCSCC-CHHHHTTT-CCBCCCCC
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCcc------------ccCCHHHHHHHHHHcC-CeEEEEEC
Confidence 99999999999998 8999987765 47999999999999765 6677777888999988 79999999
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy9997 299 LTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|.|++++|+.+++.+.+.
T Consensus 178 ~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 178 KNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp ---HHHHHHHHHHTTTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998887654
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=9.9e-28 Score=206.74 Aligned_cols=169 Identities=25% Similarity=0.344 Sum_probs=138.5
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEEC-CceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
....+||+++|++|||||||+++|+++.+...+.+|.+..+.. ..... +..+.+.+|||+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---------------- 71 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ---------------- 71 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG----------------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc----------------
Confidence 3467999999999999999999999999888888888766544 33332 33377888888887
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+..++..+++++|++
T Consensus 72 ---------------------------------------------------------------~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 72 ---------------------------------------------------------------EKKAVLKDVYYIGASGA 88 (218)
T ss_dssp ---------------------------------------------------------------GGTSCCCHHHHTTCSEE
T ss_pred ---------------------------------------------------------------hhhchHHHHHhhcCCEE
Confidence 55666677778899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCC-CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQ-KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|||++++.+++++. .|+..+..... +.|+++|+||+|+... +.+..+++..+++..+ ++|+++
T Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 154 (218)
T 4djt_A 89 ILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNR------------QKISKKLVMEVLKGKN-YEYFEI 154 (218)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC----------------CCHHHHHHHTTTCC-CEEEEE
T ss_pred EEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc------------cccCHHHHHHHHHHcC-CcEEEE
Confidence 9999999999999998 89999877654 5999999999999764 6788899999999887 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
||++|.|++++|+.+.+.+.+....
T Consensus 155 Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 155 SAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp BTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred ecCCCCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999999876544
No 81
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-27 Score=204.01 Aligned_cols=163 Identities=30% Similarity=0.579 Sum_probs=141.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.+..+...+.++++..+. ..+.+++..+.+.+|||+|+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~------------------ 79 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ------------------ 79 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTG------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCc------------------
Confidence 34689999999999999999999999998888899887764 47778888888999999988
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+.+...+..+++.+|++++
T Consensus 80 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 80 -------------------------------------------------------------ERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -------------------------------------------------------------GGGTCCCHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHhccCCEEEE
Confidence 5556666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+. . +.+..+++..+++.++ ++++++||
T Consensus 99 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~-~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 163 (213)
T 3cph_A 99 VYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDME-T------------RVVTADQGEALAKELG-IPFIESSA 163 (213)
T ss_dssp EEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCS-S------------CCSCHHHHHHHHHHHT-CCEEECBT
T ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCc-c------------cccCHHHHHHHHHHcC-CEEEEEeC
Confidence 99999999999998 8998887765 479999999999993 3 6678889999999988 69999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+.+.+.+
T Consensus 164 ~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 164 KNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=3.4e-28 Score=210.26 Aligned_cols=167 Identities=25% Similarity=0.458 Sum_probs=142.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
..+..+||+++|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~---------------- 74 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ---------------- 74 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG----------------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh----------------
Confidence 446679999999999999999999999888888888887665 447778888889999999988
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+.+..++..+++++|++
T Consensus 75 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 75 ---------------------------------------------------------------EKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp ---------------------------------------------------------------GGTSCCCHHHHTTCCEE
T ss_pred ---------------------------------------------------------------HHHhHHHHHHHhcCCEE
Confidence 55666677788899999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|||++++.+|+++. .|+..+.....++|+++|+||+|+... .+. +++..+++..+ ++|+++|
T Consensus 92 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~S 155 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR-------------KVK-AKSIVFHRKKN-LQYYDIS 155 (221)
T ss_dssp EEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSC-------------SSC-GGGCCHHHHHT-CEEEECB
T ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCccccc-------------ccc-HHHHHHHHHcC-CEEEEEe
Confidence 9999999999999998 899999988889999999999999753 122 24556778887 6999999
Q ss_pred eccCCCHHHHHHHHHHHhcCCCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
|++|.|++++|+.+.+.+.+.+.
T Consensus 156 a~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 156 AKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp GGGTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999987644
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=1.5e-27 Score=202.29 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=125.2
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCC-CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
......||+++|++|||||||+++|.+..+.. .+.+|++..+. .+++..+.+.+|||+|+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~---------------- 73 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE---TFEKGRVAFTVFDMGGA---------------- 73 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE---EEEETTEEEEEEEECCS----------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE---EEEeCCEEEEEEECCCC----------------
Confidence 34567899999999999999999999999988 88898874332 23455677788888887
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
+++..++..+++++|++
T Consensus 74 ---------------------------------------------------------------~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 74 ---------------------------------------------------------------KKFRGLWETYYDNIDAV 90 (199)
T ss_dssp ---------------------------------------------------------------GGGGGGGGGGCTTCSEE
T ss_pred ---------------------------------------------------------------HhHHHHHHHHHhcCCEE
Confidence 66667777788999999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcC---------CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-HH
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHC---------QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-KE 287 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~---------~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 287 (330)
++|||++++++|+.+. .|+..+.... .++|+++|+||+|+...... .++......... +.
T Consensus 91 i~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVK-SEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA---------AELVEILDLTTLMGD 160 (199)
T ss_dssp EEEEETTCGGGHHHHH-HHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH---------HHHHHHHTHHHHHTT
T ss_pred EEEEECCcHHHHHHHH-HHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH---------HHHHHHhcchhhccC
Confidence 9999999999999998 7877765542 28999999999999764110 011111111111 33
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.+ ++|+++||++|.|++++|+.+++.+.+....
T Consensus 161 ~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 161 HP-FVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp SC-EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred Ce-eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 44 7899999999999999999999998765443
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=7e-27 Score=198.88 Aligned_cols=157 Identities=22% Similarity=0.293 Sum_probs=120.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+. .+.||++... ..+.+++ +.+.+|||+|+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~l~i~Dt~G~------------------- 79 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELTIAG--MTFTTFDLGGH------------------- 79 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC--------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee-EEEEECC--EEEEEEECCCc-------------------
Confidence 55789999999999999999999998864 5677776653 4555555 67788888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.++.++..+++++|++++|
T Consensus 80 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 80 ------------------------------------------------------------IQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp ---------------------------------------------------------------CCGGGGGGGGCSEEEEE
T ss_pred ------------------------------------------------------------HhhHHHHHHHHhcCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----------
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL---------- 288 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------- 288 (330)
||++++++|+++. .|+..+.+. ..++|+++|+||+|+.. .++.+++.+++...
T Consensus 100 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 100 VDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPE--------------AISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTT--------------CCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred EECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCccc--------------cCCHHHHHHHhCcccccccccccc
Confidence 9999999999998 788877654 36899999999999963 35666777666532
Q ss_pred ------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 289 ------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 289 ------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
...+|+++||++|.|++++|+++.+.+
T Consensus 165 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 165 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346899999999999999999987653
No 85
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=4.7e-28 Score=203.57 Aligned_cols=166 Identities=21% Similarity=0.310 Sum_probs=118.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeecceE-EEEE---CCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNYAV-TVMI---GGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~~~~-~~~~---~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
++||+++|++|||||||+++|.+. .+...+.+|++..+.. .+.+ ++..+.+.+|||+|+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--------------- 66 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR--------------- 66 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCC---------------
Confidence 579999999999999999999985 5667778888765533 2222 234556666666666
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
++|..+++.+++++++
T Consensus 67 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 82 (184)
T 2zej_A 67 ----------------------------------------------------------------EEFYSTHPHFMTQRAL 82 (184)
T ss_dssp ----------------------------------------------------------------HHHHTTSHHHHHHSEE
T ss_pred ----------------------------------------------------------------HHHHHhhHHHccCCcE
Confidence 6666677778888999
Q ss_pred EEEEEEcCCh-hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC---HHHHHHHHHHhCCee
Q psy9997 217 FLVCFSVVSP-SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS---FEQGEKLAKELKAVK 292 (330)
Q Consensus 217 ~ilv~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~~~~~~ 292 (330)
+++|||++++ .+|+.+. .|+.++....++.|+++||||+|+..+ +.+. .+++..+++.++ ++
T Consensus 83 ~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~-~~ 148 (184)
T 2zej_A 83 YLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDE------------KQRKACMSKITKELLNKRG-FP 148 (184)
T ss_dssp EEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECGGGCCH------------HHHHHHHHHHHHHTTTCTT-SC
T ss_pred EEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECCCcccc------------hhhHHHHHHHHHHHHHhcC-Cc
Confidence 9999999997 5899998 899998877678999999999999753 2222 345667777676 44
Q ss_pred ----EEEEeeccCC-CHHHHHHHHHHHhcCCCCC
Q psy9997 293 ----YVECSALTQK-GLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 293 ----~~e~Sa~~~~-~v~~~f~~l~~~i~~~~~~ 321 (330)
|+++||++|. +++++++.+.+.+.+.+.+
T Consensus 149 ~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~ 182 (184)
T 2zej_A 149 AIRDYHFVNATEESDALAKLRKTIINESLNFKIR 182 (184)
T ss_dssp EEEEEEECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred chhheEEEecccCchhHHHHHHHHHHHHhccccC
Confidence 9999999996 9999999999988775543
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=2.4e-26 Score=194.25 Aligned_cols=156 Identities=20% Similarity=0.316 Sum_probs=122.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+|||+|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~------------------- 77 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGH------------------- 77 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCS-------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCC-------------------
Confidence 45689999999999999999999998874 567777664 34555555 67788888888
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 78 ------------------------------------------------------------~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 78 ------------------------------------------------------------IQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp ------------------------------------------------------------GGGTTSGGGGCTTCCEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHHhcCCEEEEE
Confidence 55666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----------
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL---------- 288 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------- 288 (330)
||++++++|+++. .|+..+.+. ..++|+++|+||+|+... ++.+++.++.+..
T Consensus 98 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 98 VDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNA--------------VSEAELRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC--------------CCHHHHHHHTTCSSCCC---CCS
T ss_pred EECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCC--------------CCHHHHHHHhCCccccccccccc
Confidence 9999999999998 788777654 368999999999999642 4455555544321
Q ss_pred -CCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 289 -KAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 289 -~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
..++|+++||++|.|++++|+.+.+.
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 23689999999999999999998764
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.93 E-value=1.7e-27 Score=200.78 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=125.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+||+++|++|||||||+++|.++.+...+.||++..+.. ++...+.+.+|||+|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~------------------ 77 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQ------------------ 77 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCS------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCC------------------
Confidence 3567999999999999999999999999988888988776643 2334567778888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 78 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 78 -------------------------------------------------------------PRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp -------------------------------------------------------------HHHHTTHHHHHTTCSEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHHccCCEEEE
Confidence 6666666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVK 292 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~ 292 (330)
|||++++++|+.+. .|+..+... ..+.|+++|+||+|+.... ..++..... ... .++
T Consensus 97 v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~-~~~ 160 (188)
T 1zd9_A 97 MVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGAL--------------DEKELIEKMNLSAIQDR-EIC 160 (188)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTCC--------------CHHHHHHHTTGGGCCSS-CEE
T ss_pred EEECCCHHHHHHHH-HHHHHHHhCcccCCCCEEEEEECCCCccCC--------------CHHHHHHHhChhhhccC-Cee
Confidence 99999999999998 777776554 3689999999999997531 112211111 112 367
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++||++|.|++++|+++++.+.+.
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999887654
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.9e-26 Score=192.51 Aligned_cols=160 Identities=16% Similarity=0.250 Sum_probs=124.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCC-CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.+||+++|++|+|||||+++|.+.. +...+.+|.+.. ...+.+++ ..+.+|||+|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~------------------ 77 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQ------------------ 77 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCS------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCC------------------
Confidence 457999999999999999999999988 677788887632 33444443 67778888887
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 78 -------------------------------------------------------------~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 78 -------------------------------------------------------------GRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp -------------------------------------------------------------TTTGGGGGGGGGGCSEEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhcCCEEEE
Confidence 5566667778889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH--Hh--CCe
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK--EL--KAV 291 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~--~~~ 291 (330)
|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+... ...+++.++.. .. ..+
T Consensus 97 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 2h57_A 97 VIDSSDRLRMVVAK-EELDTLLNHPDIKHRRIPILFFANKMDLRDA--------------VTSVKVSQLLCLENIKDKPW 161 (190)
T ss_dssp EEETTCHHHHHHHH-HHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSCE
T ss_pred EEECCCHHHHHHHH-HHHHHHHhChhhccCCCeEEEEEeCcCcccC--------------CCHHHHHHHhChhhccCCce
Confidence 99999999999998 7877776553 57999999999999643 34455555553 11 136
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+++++||++|.|++++|+.+.+.+.+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999988754
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.5e-26 Score=193.20 Aligned_cols=162 Identities=20% Similarity=0.285 Sum_probs=122.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+. .+.||++... ..+.++ ...+.+|||+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~------------------- 70 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV-EEIVIN--NTRFLMWDIGGQ------------------- 70 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC-EEEEET--TEEEEEEECCC--------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce-EEEEEC--CEEEEEEECCCC-------------------
Confidence 45789999999999999999999988876 6677776332 344444 366777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 71 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 71 ------------------------------------------------------------ESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp ---------------------------------------------------------------CGGGHHHHTTCCEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhcCCCEEEEE
Confidence 55666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----HhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----ELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~ 293 (330)
||++++++|+.+. .|+..+... ..+.|+++|+||+|+... ...+++.+... ..+ +++
T Consensus 91 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~~ 154 (187)
T 1zj6_A 91 VDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQ-WHI 154 (187)
T ss_dssp EETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHHTGGGCCSSC-EEE
T ss_pred EeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCC--------------CCHHHHHHHhChhhhcCCC-cEE
Confidence 9999999999998 788887765 368999999999999643 23344433332 223 689
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+++||++|.|++++|+++++.+.+.+.+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 155 QACCALTGEGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHCC----
T ss_pred EEccCCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998766544
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=2e-27 Score=195.12 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=116.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|.++.|.. +.||++... ..+ +.....+.+|||+|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~---------------------- 54 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETV--EYKNISFTVWDVGGQ---------------------- 54 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE-EEE--ECSSCEEEEEECCCC----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE-EEE--EECCEEEEEEEcCCC----------------------
Confidence 589999999999999999999988764 567776322 222 234567777777777
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEc
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 223 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 223 (330)
+++...+..+++++|++++|||+
T Consensus 55 ---------------------------------------------------------~~~~~~~~~~~~~~d~~i~v~d~ 77 (164)
T 1r8s_A 55 ---------------------------------------------------------DKIRPLWRHYFQNTQGLIFVVDS 77 (164)
T ss_dssp ---------------------------------------------------------GGGHHHHHHHTTTCSEEEEEEET
T ss_pred ---------------------------------------------------------hhhHHHHHHHhccCCEEEEEEEC
Confidence 66666667788899999999999
Q ss_pred CChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-----HHHHhCCeeEEEE
Q psy9997 224 VSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-----LAKELKAVKYVEC 296 (330)
Q Consensus 224 ~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~ 296 (330)
+++++|+.+. .|+..+... ..+.|+++|+||+|+..+ ...++... +++..+ ++++++
T Consensus 78 ~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~ 141 (164)
T 1r8s_A 78 NDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNA--------------MNAAEITDKLGLHSLRHRN-WYIQAT 141 (164)
T ss_dssp TCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCSSCC-EEEEEC
T ss_pred CCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCC--------------CCHHHHHHHhCcccccCcc-EEEEEc
Confidence 9999999998 787776553 368999999999999653 11122211 111222 679999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+.+.+.+
T Consensus 142 Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 142 CATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp BTTTTBTHHHHHHHHHHHC--
T ss_pred ccCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 91
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=1e-26 Score=197.36 Aligned_cols=169 Identities=14% Similarity=0.177 Sum_probs=124.1
Q ss_pred cCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE---EEEEC-CceeeeeeeecCCCccccccCCCCCC
Q psy9997 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV---TVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYP 133 (330)
Q Consensus 58 ~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~---~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~ 133 (330)
..+...+||+++|++|||||||++++.+ .+... ++.+..+.. ...+. +..+.+++|||+|+
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------ 79 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ------------ 79 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSS------------
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCC------------
Confidence 3456689999999999999999997665 44333 444443322 22232 56677777777777
Q ss_pred CCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc---Ccc
Q psy9997 134 QTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR---PLS 210 (330)
Q Consensus 134 ~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~---~~~ 210 (330)
++|.... ..+
T Consensus 80 -------------------------------------------------------------------~~~~~~~~~~~~~ 92 (196)
T 3llu_A 80 -------------------------------------------------------------------MDFFDPTFDYEMI 92 (196)
T ss_dssp -------------------------------------------------------------------CCTTCTTCCHHHH
T ss_pred -------------------------------------------------------------------HHHHhhhhhcccc
Confidence 5554444 577
Q ss_pred ccCCCEEEEEEEcCCh--hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH--
Q psy9997 211 YPQTDVFLVCFSVVSP--SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-- 286 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 286 (330)
++++|++++|||++++ +++..+. .|+..+....+++|+++||||+|+..+....+. .+.+..+++..+++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET-----QRDIHQRANDDLADAG 166 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH-----HHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEeccccCchhhhhHH-----HhHHHHHHHHHHHHhh
Confidence 8899999999999997 7777777 788877666789999999999999764221111 25677788888998
Q ss_pred --HhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 287 --ELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 287 --~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.++ ++|+++||++ .|++++|+.+++.++
T Consensus 167 ~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 167 LEKLH-LSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CTTSC-EEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred hhcCC-cceEEEEech-hhHHHHHHHHHHHhC
Confidence 555 7999999999 999999999998874
No 92
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.93 E-value=2.1e-26 Score=190.13 Aligned_cols=163 Identities=15% Similarity=0.198 Sum_probs=121.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..+||+++|++|+|||||+++|.++.+. .+.||.+..+ ..+.++ ...+.+|||+|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~-------------------- 61 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV-ETVTYK--NLKFQVWDLGGL-------------------- 61 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE-EEEEET--TEEEEEEEECCC--------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce-EEEEEC--CEEEEEEECCCC--------------------
Confidence 4689999999999999999999998875 4567765432 234443 466777787777
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
+.+...+..+++++|++++||
T Consensus 62 -----------------------------------------------------------~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 62 -----------------------------------------------------------TSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp -----------------------------------------------------------GGGGGGGGGGCTTCSEEEEEE
T ss_pred -----------------------------------------------------------hhhhHHHHHHhccCCEEEEEE
Confidence 666666777888999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+...... +++.......+++..+ ++++++||+
T Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~ 151 (171)
T 1upt_A 83 DSCDRDRIGISK-SELVAMLEEEELRKAILVVFANKQDMEQAMTS---------SEMANSLGLPALKDRK-WQIFKTSAT 151 (171)
T ss_dssp ETTCCTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH---------HHHHHHHTGGGCTTSC-EEEEECCTT
T ss_pred ECCCHHHHHHHH-HHHHHHHhchhhCCCEEEEEEECCCCcCCCCH---------HHHHHHhCchhccCCc-eEEEECcCC
Confidence 999999999998 6776665542 68999999999999764110 0111111111222333 689999999
Q ss_pred cCCCHHHHHHHHHHHhcCC
Q psy9997 300 TQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~~ 318 (330)
+|.|++++|+.+.+.+.+.
T Consensus 152 ~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 152 KGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999988654
No 93
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.6e-26 Score=203.22 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=87.1
Q ss_pred ccccccccccccccCcccc---------------------CCCEEEEEEEcCCh--hhHhhhhhcchhhhhhc--CCCCc
Q psy9997 194 LFDTAGQEDYDRLRPLSYP---------------------QTDVFLVCFSVVSP--SSFENVKEKWVPEITHH--CQKTP 248 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~---------------------~~d~~ilv~d~~~~--~s~~~~~~~~~~~i~~~--~~~~p 248 (330)
.+.++|+++|..++..+++ +||++++|||++++ .+|+.+. .|+.++... ..++|
T Consensus 122 ~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~-~~l~~i~~~~~~~~~p 200 (255)
T 3c5h_A 122 YIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKP 200 (255)
T ss_dssp HHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHH-HHHHHHHHHHHHTTCC
T ss_pred ccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHH-HHHHHHHHHhccCCCC
Confidence 3456667777777777776 89999999999999 9999998 899988765 36899
Q ss_pred EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 249 iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+++|+||+|+... +.+ ++++++++....++|+++||++|.|++++|+.+++.+.
T Consensus 201 iilV~NK~Dl~~~------------~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 201 IVVVLTKCDEGVE------------RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp EEEEEECGGGBCH------------HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEEEccccccc------------HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9999999999643 333 57888887743479999999999999999999988763
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=4e-26 Score=191.03 Aligned_cols=157 Identities=21% Similarity=0.320 Sum_probs=119.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+.+||+++|++|||||||+++|.++.+ ..+.+|.+..+ ..+.+++ ..+.+|||+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~----------------- 75 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQ----------------- 75 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSS-----------------
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCC-----------------
Confidence 345679999999999999999999999987 56667776443 3444443 66777787777
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++..++..+++++|+++
T Consensus 76 --------------------------------------------------------------~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 76 --------------------------------------------------------------ESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --------------------------------------------------------------GGGTCGGGGGGTTCCEEE
T ss_pred --------------------------------------------------------------HhHHHHHHHHhccCCEEE
Confidence 666667777889999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----HhCCe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----ELKAV 291 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 291 (330)
+|||++++++|+.+. .|+..+... ..+.|+++|+||+|+... ...+++..... ..+ +
T Consensus 94 ~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~ 157 (181)
T 2h17_A 94 VVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC--------------MTVAEISQFLKLTSIKDHQ-W 157 (181)
T ss_dssp EEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCCSSC-E
T ss_pred EEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcccC--------------CCHHHHHHHhCcccccCCc-e
Confidence 999999999999998 677776654 368999999999999653 22333333321 222 6
Q ss_pred eEEEEeeccCCCHHHHHHHHHHH
Q psy9997 292 KYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+++++||++|.|++++|+.+++.
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHHHTC
T ss_pred EEEEccCCCCcCHHHHHHHHHhh
Confidence 89999999999999999998764
No 95
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=1e-25 Score=189.10 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=124.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++.++. ...+.||++... ..+.++ ...+.+|||+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~------------------- 72 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHR--GFKLNIWDVGGQ------------------- 72 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEET--TEEEEEEEECCS-------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEEC--CEEEEEEECCCC-------------------
Confidence 467999999999999999999999888 777888887443 234443 467778888887
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 73 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 73 ------------------------------------------------------------KSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp ------------------------------------------------------------HHHHTTGGGGCTTCSEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhcCCCEEEEE
Confidence 66666777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH-----HhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK-----ELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~ 293 (330)
||++++.+|+++. .|+..+... ..+.|+++|+||+|+..+ ...++..+... .. .+++
T Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~-~~~~ 156 (186)
T 1ksh_A 93 VDSADRQRMQDCQ-RELQSLLVEERLAGATLLIFANKQDLPGA--------------LSCNAIQEALELDSIRSH-HWRI 156 (186)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCCSS-CEEE
T ss_pred EECcCHHHHHHHH-HHHHHHHhChhcCCCcEEEEEeCccCCCC--------------CCHHHHHHHhChhhccCC-ceEE
Confidence 9999999999998 777776654 368999999999999754 12233322221 22 3689
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 157 QGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=5e-27 Score=198.77 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=115.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+.+||+++|++|||||||+++|.++.+. .+.||++... ..+.. ..+.+.+|||+|+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~Dt~G~------------------ 83 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNICFTVWDVGGQ------------------ 83 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEE-EEEEE--TTEEEEEEECC--------------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeE-EEEEE--CCEEEEEEECCCC------------------
Confidence 356799999999999999999999988875 3456655221 22332 3466777777777
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+++...+..+++++|++++
T Consensus 84 -------------------------------------------------------------~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 84 -------------------------------------------------------------DKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp ----------------------------------------------------------------CTTHHHHHHTCCEEEE
T ss_pred -------------------------------------------------------------HhHHHHHHHHhccCCEEEE
Confidence 6666666777889999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-----HHHHhCCee
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-----LAKELKAVK 292 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~ 292 (330)
|||++++++|+.+. .|+..+.... .+.|+++|+||+|+... ...++... +++..+ ++
T Consensus 103 v~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~-~~ 166 (192)
T 2b6h_A 103 VVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNA--------------MPVSELTDKLGLQHLRSRT-WY 166 (192)
T ss_dssp EEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC--------------CCHHHHHHHTTGGGCSSCC-EE
T ss_pred EEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCc-eE
Confidence 99999999999998 7887765532 58999999999999653 11122111 111222 57
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++++||++|.|++++|+.+++.+.+
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred EEECcCCCcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998864
No 97
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=1.5e-26 Score=208.93 Aligned_cols=105 Identities=9% Similarity=0.111 Sum_probs=78.9
Q ss_pred cCccccCCCEEEEEEEcCChhhHhhhh--hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 207 RPLSYPQTDVFLVCFSVVSPSSFENVK--EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 207 ~~~~~~~~d~~ilv~d~~~~~s~~~~~--~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
++.+|++++++|+|||++++ .++... ..|+.++.+..+++|+++||||+|+..+....+ .+|++..++++++
T Consensus 66 ~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~-----~~R~V~~~~~~~l 139 (331)
T 3r7w_B 66 SERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD-----AQRDIMQRTGEEL 139 (331)
T ss_dssp HHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHH-----HHHHHHHHHHHTT
T ss_pred hhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhh-----HHHHhhHHHHHHH
Confidence 46678899999999999988 333332 033555555567999999999999976422111 1156888889999
Q ss_pred HHH----hCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 285 AKE----LKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 285 ~~~----~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++. ++ +.|+|+||++ .+|+++|..+++.++.+.
T Consensus 140 a~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 140 LELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp SSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred HhhcccccC-ceEEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 986 45 7999999998 699999999999988653
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=4e-26 Score=191.29 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=118.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|||||||+++|.++.+ ..+.||.+.. ...+..+ .+.+.+|||+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~------------------- 70 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQ--GFKLNVWDIGGQ------------------- 70 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEET--TEEEEEEECSSC-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEEC--CEEEEEEECCCC-------------------
Confidence 5679999999999999999999998864 3456666632 2234444 456777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+...+..+++++|++++|
T Consensus 71 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 71 ------------------------------------------------------------RKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp ------------------------------------------------------------GGGHHHHHHHHTTCSEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHhCCCCEEEEE
Confidence 66666667778899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
||++++++|+.+. .|+..+... ..+.|+++|+||+|+... + ..++..+.. ... .+++
T Consensus 91 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~--~~~~~~~~~~~~~~~~~-~~~~ 154 (181)
T 1fzq_A 91 IDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTA------------A--PASEIAEGLNLHTIRDR-VWQI 154 (181)
T ss_dssp EETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTC------------C--CHHHHHHHTTGGGCCSS-CEEE
T ss_pred EECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccC------------C--CHHHHHHHhCchhccCC-ceEE
Confidence 9999999999998 777776543 368999999999999754 1 222222211 112 2679
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+++++.+.++
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 155 QSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EECCTTTCTTHHHHHHHHHHTC---
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999887653
No 99
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=2e-26 Score=220.36 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=121.2
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|+|||||+++|.+.. +...+.+|..+.+...+..++. .+.+|||+|..+....
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~------------- 259 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKV------------- 259 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTB-------------
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCccc-------------
Confidence 5899999999999999999999765 2445555556666667777665 6789999996221110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc-cccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL-SYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~-~~~~~d~~il 219 (330)
...+|.|...+.. +++.+|++++
T Consensus 260 --------------------------------------------------------~~~~e~~~~~~~~~~~~~ad~~ll 283 (456)
T 4dcu_A 260 --------------------------------------------------------YETTEKYSVLRALKAIDRSEVVAV 283 (456)
T ss_dssp --------------------------------------------------------CCCCSHHHHHHHHHHHHHCSEEEE
T ss_pred --------------------------------------------------------chHHHHHHHHHHHHHHhhCCEEEE
Confidence 0112666665554 6788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e 295 (330)
|+|+++..+..+. .|...+.. .+.|+++|+||+|+... +.+..+++.+.++.. +..++++
T Consensus 284 viD~~~~~~~~~~--~~~~~~~~--~~~~~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 284 VLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDK------------DESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp EEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCC------------CSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred EEeCCCCcCHHHH--HHHHHHHH--cCCCEEEEEEChhcCCC------------chHHHHHHHHHHHHhcccCCCCCEEE
Confidence 9999886554433 46666655 47999999999999865 566677777777665 2368999
Q ss_pred EeeccCCCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+||++|.|++++|+.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999887743
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=3.1e-25 Score=188.62 Aligned_cols=163 Identities=26% Similarity=0.506 Sum_probs=138.3
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..+|++++|++|+|||||++++.+..+...+.||++..+ ...+.+++..+.+.+||++|+
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~------------------- 64 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ------------------- 64 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 468999999999999999999999999888889987666 447888998899999999998
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++..++..+++.++++++|
T Consensus 65 ------------------------------------------------------------~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 65 ------------------------------------------------------------ERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp ------------------------------------------------------------GGTTCCCHHHHTTCSEEEEE
T ss_pred ------------------------------------------------------------hhhhhhhHHHHhcCCEEEEE
Confidence 55555566677789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
||++++.+|+++. .|+..+.... .+.|+++|+||+|+... +.+..+++++++...+ +.++++||+
T Consensus 85 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~~d~Sal 150 (199)
T 2f9l_A 85 YDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNN-LSFIETSAL 150 (199)
T ss_dssp EETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG------------CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred EECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------cCcCHHHHHHHHHHcC-CeEEEEeCC
Confidence 9999999999987 7888776653 57899999999999764 6678888999999987 789999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
++.|++++|+.+.+.+.+
T Consensus 151 ~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999888764
No 101
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=3e-26 Score=217.92 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=117.3
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+||+++|++|||||||+++++++.+ ...+..|..+.+...+..++.. +.+|||+|+.+.....
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~------------ 240 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVY------------ 240 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBC------------
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCcccc------------
Confidence 48999999999999999999999876 3455555556666667777654 7899999984322110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC-ccccCCCEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP-LSYPQTDVFLV 219 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~-~~~~~~d~~il 219 (330)
.+.|.|..++. .+++.+|++++
T Consensus 241 ---------------------------------------------------------~~~e~~~~~~~~~~~~~ad~~ll 263 (436)
T 2hjg_A 241 ---------------------------------------------------------ETTEKYSVLRALKAIDRSEVVAV 263 (436)
T ss_dssp ---------------------------------------------------------CCCSHHHHHHHHHHHHHCSEEEE
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHHHHhCCEEEE
Confidence 01155555444 36788999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-HHHHh---CCeeEEE
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-LAKEL---KAVKYVE 295 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~~~~e 295 (330)
|||++++.++++.. |+..+.. .+.|+++|+||+|+... +....++..+ +.+.+ ...++++
T Consensus 264 v~D~~~~~s~~~~~--~~~~~~~--~~~~iiiv~NK~Dl~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 264 VLDGEEGIIEQDKR--IAGYAHE--AGKAVVIVVNKWDAVDK------------DESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp EEETTTCCCHHHHH--HHHHHHH--TTCEEEEEEECGGGSCC------------CTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred EEcCCcCCcHHHHH--HHHHHHH--cCCcEEEEEECccCCCc------------chHHHHHHHHHHHHhcccCCCCCEEE
Confidence 99999999988874 7766654 47999999999999764 3333333322 22222 2368999
Q ss_pred EeeccCCCHHHHHHHHHHHhcC
Q psy9997 296 CSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
+||++|.|++++|+.+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999998877753
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=3.5e-26 Score=192.57 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=120.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++..+.+.. +.||++.. ...+..+ ...+.+|||+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~------------------- 76 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQ------------------- 76 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCS-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCC-------------------
Confidence 467899999999999999999999888753 55666532 2233333 466777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 77 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 77 ------------------------------------------------------------TGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp ------------------------------------------------------------SSSCCCCSSSSTTCCEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhhcCCEEEEE
Confidence 55666677788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHH-----HHHHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK-----LAKELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~ 293 (330)
||++++++|+.+. .|+..+.... .+.|+++|+||+|+.... ..++... ++...+ +++
T Consensus 97 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~-~~~ 160 (189)
T 2x77_A 97 VDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLPDAA--------------SEAEIAEQLGVSSIMNRT-WTI 160 (189)
T ss_dssp EETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTSTTCC--------------CHHHHHHHTTGGGCCSSC-EEE
T ss_pred EeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCcCCC--------------CHHHHHHHhChhhccCCc-eEE
Confidence 9999999999988 6777665542 589999999999997541 1122111 112233 589
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.|++++|+.+.+.+.+.
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 103
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=6.5e-25 Score=185.59 Aligned_cols=164 Identities=26% Similarity=0.468 Sum_probs=141.0
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
....+|++++|++|||||||++++.+..+...+.||++..+. ..+.+++..+.+.+||++|+
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~----------------- 88 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL----------------- 88 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSC-----------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCC-----------------
Confidence 345689999999999999999999999999899999987774 58888999999999999998
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
+++...+..+++.+++++
T Consensus 89 --------------------------------------------------------------~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 89 --------------------------------------------------------------ERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp --------------------------------------------------------------CSSSCCCHHHHTTCCEEE
T ss_pred --------------------------------------------------------------cchhhhhHHHhhcCCEEE
Confidence 444455556677889999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||+++..+|+++. .|+..+.... .+.|+++|+||+|+... +.+..+++++++...+ +.++++|
T Consensus 107 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~------------~~~~~~~a~~l~~~~~-~~~ld~S 172 (191)
T 1oix_A 107 LVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL------------RAVPTDEARAFAEKNG-LSFIETS 172 (191)
T ss_dssp EEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG------------CCSCHHHHHHHHHHTT-CEEEECC
T ss_pred EEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc------------cccCHHHHHHHHHHcC-CEEEEEe
Confidence 999999999999987 7888776643 57899999999999754 6677889999999987 7899999
Q ss_pred eccCCCHHHHHHHHHHHhc
Q psy9997 298 ALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~ 316 (330)
|+++.|++++|+.+.+.++
T Consensus 173 ald~~~v~~l~~~l~~~i~ 191 (191)
T 1oix_A 173 ALDSTNVEAAFQTILTEIY 191 (191)
T ss_dssp TTTCTTHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999988763
No 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-25 Score=187.54 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=118.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||++++.++.+ ..+.||++... ..+..+ ...+.+|||+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~Dt~G~------------------- 72 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV-ETLSYK--NLKLNVWDLGGQ------------------- 72 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE-EEEEET--TEEEEEEEEC---------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce-EEEEEC--CEEEEEEECCCC-------------------
Confidence 4678999999999999999999998877 55667766332 334443 366777777777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+++...+..+++++|++++|
T Consensus 73 ------------------------------------------------------------~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 73 ------------------------------------------------------------TSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp --------------------------------------------------------------CCTTGGGTTTTEEEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhccCCEEEEE
Confidence 55566667788899999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh----CCeeEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL----KAVKYV 294 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~ 294 (330)
||++++.+|+.+. .|+..+... ..+.|+++|+||+|+..+ ...++........ ..++++
T Consensus 93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~ 157 (183)
T 1moz_A 93 VDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGA--------------LSASEVSKELNLVELKDRSWSIV 157 (183)
T ss_dssp EETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTC--------------CCHHHHHHHTTTTTCCSSCEEEE
T ss_pred EECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCC--------------CCHHHHHHHhCcccccCCceEEE
Confidence 9999999999998 788777665 368999999999999653 2233333332211 125799
Q ss_pred EEeeccCCCHHHHHHHHHHHhcC
Q psy9997 295 ECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 295 e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++||++|.|++++|+++.+.+.+
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 158 ASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EccCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=8.8e-25 Score=187.68 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=115.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCc-eeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|+++.|...+.++....+. +.+++. .+.+.+|||+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~------------------ 64 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGH------------------ 64 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCC------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCC------------------
Confidence 45789999999999999999999999998888655433222 555544 577888888888
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccc-ccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDR-LRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~-~~~~~~~~~d~~i 218 (330)
+++.. ++..+++.+|+++
T Consensus 65 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 65 -------------------------------------------------------------ESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHGGGEEEEE
T ss_pred -------------------------------------------------------------hhHHHHHHHHHHhhCCEEE
Confidence 55544 5556788999999
Q ss_pred EEEEcCChh-hHhhhhhcchhhhhhc---CCCCcEEEEEeccCCCCCchhhHH---hh-------hCCC-----------
Q psy9997 219 VCFSVVSPS-SFENVKEKWVPEITHH---CQKTPFLLVGTQIDLREDAPTLEK---LA-------KNKQ----------- 273 (330)
Q Consensus 219 lv~d~~~~~-s~~~~~~~~~~~i~~~---~~~~piilV~nK~Dl~~~~~~~~~---~~-------~~~~----------- 273 (330)
+|||+++.. ++..+.+.|...+... ..++|+++|+||+|+......... +. ....
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999854 5666663455555442 357999999999999765321100 00 0000
Q ss_pred -CCcCHHHHHHHHHHhC--CeeEEEEeeccC------CCHHHHHHHHHHHh
Q psy9997 274 -KPISFEQGEKLAKELK--AVKYVECSALTQ------KGLKNVFDEAILAA 315 (330)
Q Consensus 274 -~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~------~~v~~~f~~l~~~i 315 (330)
+.+..++++.|+.... .++|+|+||++| .||+++|+++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 1122222223333221 478999999999 99999999998753
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.90 E-value=1.4e-24 Score=179.00 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=112.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec-ceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|..+|++++|++|+|||||+++|.+..+...+.|+.... ....+..++ ..+.+|||+|++++....
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~----------- 67 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANS----------- 67 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSS-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcc-----------
Confidence 457899999999999999999999987655555554333 233455554 578899999985432110
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc--CCCEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP--QTDVF 217 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~--~~d~~ 217 (330)
....+...+++ ++|++
T Consensus 68 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 85 (165)
T 2wji_A 68 --------------------------------------------------------------IDEIIARDYIINEKPDLV 85 (165)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHCCSEE
T ss_pred --------------------------------------------------------------hhHHHHHHHHhcCCCCEE
Confidence 00112233343 78999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|+|+++.+. .. .|+.++.+ .+.|+++|+||+|+... +.+.. +++++++.++ ++++++|
T Consensus 86 i~v~D~~~~~~---~~-~~~~~~~~--~~~p~ilv~nK~Dl~~~------------~~~~~-~~~~~~~~~~-~~~~~~S 145 (165)
T 2wji_A 86 VNIVDATALER---NL-YLTLQLME--MGANLLLALNKMDLAKS------------LGIEI-DVDKLEKILG-VKVVPLS 145 (165)
T ss_dssp EEEEETTCHHH---HH-HHHHHHHH--TTCCEEEEEECHHHHHH------------TTCCC-CHHHHHHHHT-SCEEECB
T ss_pred EEEecCCchhH---hH-HHHHHHHh--cCCCEEEEEEchHhccc------------cChhh-HHHHHHHHhC-CCEEEEE
Confidence 99999998654 33 46666655 37999999999998643 33332 4677888887 6999999
Q ss_pred eccCCCHHHHHHHHHHHh
Q psy9997 298 ALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i 315 (330)
|++|.|++++|+.+.+.+
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999998876
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.90 E-value=1.1e-22 Score=168.94 Aligned_cols=99 Identities=16% Similarity=0.267 Sum_probs=68.7
Q ss_pred cccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS 277 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~ 277 (330)
+++...+..++..+|++++|||+++ +.+++.+. .+.. .+.|+++|+||+|+....
T Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~-----~~~~--~~~p~ilv~nK~Dl~~~~--------------- 123 (178)
T 2lkc_A 66 EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAIN-----HAKA--ANVPIIVAINKMDKPEAN--------------- 123 (178)
T ss_dssp SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHH-----HHGG--GSCCEEEEEETTTSSCSC---------------
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-----HHHh--CCCCEEEEEECccCCcCC---------------
Confidence 5555666677788999999999988 44444433 2222 478999999999997531
Q ss_pred HHHHHHHHHHhC--------CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 278 FEQGEKLAKELK--------AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 278 ~~~~~~~~~~~~--------~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.++.....+..+ .++++++||++|.|++++|+.+++.+...+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 124 PDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp HHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 122222222211 25899999999999999999999888665443
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=2.6e-24 Score=195.30 Aligned_cols=168 Identities=15% Similarity=0.242 Sum_probs=130.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
..+||+++|++|||||||++++.++. +. ..+.+|++..+.. +.+++ .+.+.+|||+|++++.
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~-~~~~~-~~~l~i~Dt~G~~~~~------------- 66 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH-LRFLG-NMTLNLWDCGGQDVFM------------- 66 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE-EEETT-TEEEEEEEECCSHHHH-------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE-EEeCC-ceEEEEEECCCcHHHh-------------
Confidence 36899999999999999999998873 32 2566777666653 34444 6788899999983321
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc-cccccCccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED-YDRLRPLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~-~~~~~~~~~~~~d~~ 217 (330)
+. +..++..+++++|++
T Consensus 67 --------------------------------------------------------------~~~~~~~~~~~~~~ad~v 84 (307)
T 3r7w_A 67 --------------------------------------------------------------ENYFTKQKDHIFQMVQVL 84 (307)
T ss_dssp --------------------------------------------------------------HHHHTTTHHHHHTTCSEE
T ss_pred --------------------------------------------------------------hhhhhhHHHHHhccCCEE
Confidence 11 156677788899999
Q ss_pred EEEEEcCChhhHhhhhhcc---hhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCC----cCHHHHHHHHHHhCC
Q psy9997 218 LVCFSVVSPSSFENVKEKW---VPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKP----ISFEQGEKLAKELKA 290 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~---~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~ 290 (330)
++|||++++++|+++. .| +..+....+++|+++||||+|+..+.. +. +..++++++++.+|.
T Consensus 85 i~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~----------r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 85 IHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVLLHKMDLVQLDK----------REELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp EEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEEEECGGGSCHHH----------HHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEEEecccccchhh----------hhHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999987 56 444555567899999999999976311 33 677889999999973
Q ss_pred --eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 291 --VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 --~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++|+++||++ .++.++|..++..++..
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence 7999999999 89999999999887754
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.1e-25 Score=202.46 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=114.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.+.+||+++|++|||||||+++|.++.+...+ ||++..+. .++...+.+.+|||+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~---~~~~~~~~l~i~Dt~G~------------------- 219 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNISFTVWDVGGQ------------------- 219 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE---EEEETTEEEEEEECC---------------------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE---EEecCcEEEEEEECCCC-------------------
Confidence 45689999999999999999999998875443 45543332 23334456677777776
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++.+|++++|
T Consensus 220 ------------------------------------------------------------~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 220 ------------------------------------------------------------DKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp ---------------------------------------------------------------CCSHHHHHTTEEEEEEE
T ss_pred ------------------------------------------------------------HhHHHHHHHHhccCCEEEEE
Confidence 66777777788999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
||++++.+|..+. .|+..+.... .++|+++|+||+|+.... ..++..... ... .++|
T Consensus 240 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--------------~~~~i~~~~~~~~~~~~-~~~~ 303 (329)
T 3o47_A 240 VDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAM--------------NAAEITDKLGLHSLRHR-NWYI 303 (329)
T ss_dssp EETTCSSSHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTCC--------------CHHHHHHHHTCTTCCSS-CEEE
T ss_pred EECCchHHHHHHH-HHHHHHHhhhccCCCeEEEEEECccCCccc--------------CHHHHHHHhchhhhhcC-CCEE
Confidence 9999999999998 5555544332 589999999999997541 122221111 112 2679
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+++||++|.||+++|+.+++.+.+.
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988764
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.89 E-value=9.3e-25 Score=183.45 Aligned_cols=169 Identities=15% Similarity=0.127 Sum_probs=131.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
+||+++|++|||||||+++|.+..+...+.|+..... ..+..+ .+.+|||+|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~--------------------- 55 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFG--------------------- 55 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBS---------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCcc---------------------
Confidence 6899999999999999999999998877777553222 233333 68899999971
Q ss_pred cccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC-CCEEEEEEE
Q psy9997 144 NMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ-TDVFLVCFS 222 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~-~d~~ilv~d 222 (330)
....||+.+++.+......+++. ++++++||+
T Consensus 56 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 88 (190)
T 2cxx_A 56 -----------------------------------------------FMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVL 88 (190)
T ss_dssp -----------------------------------------------CCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEE
T ss_pred -----------------------------------------------ccccCCHHHHHHHHHHHHHHHHhhhccCCEEEE
Confidence 12346777778888888888887 999999999
Q ss_pred cCChhhHhhhhhcchhh--------hhhc--CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe-
Q psy9997 223 VVSPSSFENVKEKWVPE--------ITHH--CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV- 291 (330)
Q Consensus 223 ~~~~~s~~~~~~~~~~~--------i~~~--~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~- 291 (330)
+.+..+|+++.+.|... +... ..+.|+++|+||+|+... + .+++..+++.++..
T Consensus 89 v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~---~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 89 VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN------------V---QEVINFLAEKFEVPL 153 (190)
T ss_dssp EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC------------H---HHHHHHHHHHHTCCG
T ss_pred EEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc------------H---HHHHHHHHHHhhhhh
Confidence 99999999874467653 2221 258999999999999764 2 56788888888741
Q ss_pred -----eEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 292 -----KYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 292 -----~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+++++||++|.|++++|+.+++.+.+.++
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 47999999999999999999999876544
No 111
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.2e-22 Score=193.23 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=108.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
+|++++|++|||||||++++.+..+ ...+..|..+.....+.+++. .+.+|||+|++++......
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~----------- 247 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPR----------- 247 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC--------------------
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchh-----------
Confidence 7999999999999999999998865 344545555555567777776 4678999998443221100
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVFLVC 220 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~ilv 220 (330)
+.+.|...+ ..+++.+|+++++
T Consensus 248 ---------------------------------------------------------~~e~~~~~~~~~~i~~ad~vllv 270 (439)
T 1mky_A 248 ---------------------------------------------------------TVEKYSNYRVVDSIEKADVVVIV 270 (439)
T ss_dssp -----------------------------------------------------------CCSCCHHHHHHHHHCSEEEEE
T ss_pred ---------------------------------------------------------hHHHHHHHHHHHHHhhCCEEEEE
Confidence 002222222 1346779999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH-HHHHHh---CCeeEEEE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE-KLAKEL---KAVKYVEC 296 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~~~e~ 296 (330)
+|+++..++++.. +...+.. .+.|+++|+||+|+... +....++.. .+.+.+ +..+++++
T Consensus 271 ~d~~~~~~~~~~~--i~~~l~~--~~~~~ilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 271 LDATQGITRQDQR--MAGLMER--RGRASVVVFNKWDLVVH------------REKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp EETTTCCCHHHHH--HHHHHHH--TTCEEEEEEECGGGSTT------------GGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred EeCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECccCCCc------------hhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 9999877766532 3333333 47899999999999754 333333332 222222 23689999
Q ss_pred eeccCCCHHHHHHHHHHHhc
Q psy9997 297 SALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~ 316 (330)
||++|.|++++|+.+.+.+.
T Consensus 335 SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887664
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=1.2e-23 Score=203.19 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=121.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||+++|.++.+.. +.||++..+.. ++...+.+.+|||+|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~---~~~~~~~~~l~Dt~G~------------------- 376 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET---VTYKNVKFNVWDVGGQ------------------- 376 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE---EESSSCEEEEEEECCC-------------------
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE---EEeCCEEEEEEECCCc-------------------
Confidence 567999999999999999999999988654 45677655432 3334567777887777
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
+.+..++..+++++|++++|
T Consensus 377 ------------------------------------------------------------~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 377 ------------------------------------------------------------DKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp ------------------------------------------------------------GGGSGGGGGGGTTCCEEEEE
T ss_pred ------------------------------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 66667777889999999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcC--CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHH-----HHhCCeeE
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHC--QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLA-----KELKAVKY 293 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~ 293 (330)
||++++++|+.+. .|+..+.+.. .++|+|+|+||+|+... ...++..... ... .+++
T Consensus 397 ~D~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~-~~~~ 460 (497)
T 3lvq_E 397 VDCADRDRIDEAR-QELHRIINDREMRDAIILIFANKQDLPDA--------------MKPHEIQEKLGLTRIRDR-NWYV 460 (497)
T ss_dssp EETTCGGGHHHHH-HHHHHHHTSGGGTTCEEEEEEECCSSSSC--------------CCHHHHHHHTTCTTCCSS-CEEE
T ss_pred EECcchhHHHHHH-HHHHHHhhhhhcCCCcEEEEEECCCCCcC--------------CCHHHHHHHhchhhhhcC-CeEE
Confidence 9999999999998 6777765432 58999999999999753 1222222111 112 2579
Q ss_pred EEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 294 VECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
+++||++|.|++++|+++.+.+-+...+
T Consensus 461 ~~~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 461 QPSCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp EECBTTTTBTHHHHHHHHHHHCC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999888655443
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.88 E-value=1.8e-23 Score=203.74 Aligned_cols=165 Identities=20% Similarity=0.263 Sum_probs=119.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEE---------ECCceeeeeeeecCCCccccccCCC
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM---------IGGEPYTLGLFDTAGQEDYDRLRPL 130 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~---------~~~~~~~l~i~Dt~g~~~~~~l~~~ 130 (330)
.+..+||+++|++|||||||++++.++.|...+.||++..+..... .++..+.+.+|||+|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G---------- 107 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG---------- 107 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCc----------
Confidence 4567999999999999999999999999988888988777654321 122234455555555
Q ss_pred CCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc
Q psy9997 131 SYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS 210 (330)
Q Consensus 131 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~ 210 (330)
++.+...+..+
T Consensus 108 ---------------------------------------------------------------------~e~~~~~~~~~ 118 (535)
T 3dpu_A 108 ---------------------------------------------------------------------QEIMHASHQFF 118 (535)
T ss_dssp ---------------------------------------------------------------------CCTTTTTCHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 47777777778
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
++.+|++++|||+++. +.+. .|+.++....++.|+++|+||+|+... +.+..+++++++...+
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~-~~~~~l~~~~~~~pvilV~NK~Dl~~~------------~~v~~~~~~~~~~~~~- 181 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKH-YWLRHIEKYGGKSPVIVVMNKIDENPS------------YNIEQKKINERFPAIE- 181 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHH-HHHHHHHHHSSSCCEEEEECCTTTCTT------------CCCCHHHHHHHCGGGT-
T ss_pred ccCCcEEEEEEeCCCc---hhHH-HHHHHHHHhCCCCCEEEEEECCCcccc------------cccCHHHHHHHHHhcC-
Confidence 8899999999998764 5555 799999888888999999999999765 6778888999988887
Q ss_pred eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 291 VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+++++||++|.|++++|+.+.+.+.+.+.
T Consensus 182 ~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 182 NRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp TCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred CceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 689999999999999999999999887644
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=3e-23 Score=174.10 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=119.0
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
+.|+.+||+++|++|||||||+++|.+..+...+.|+..... ...+..++ ..+.+|||+|++.+....
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~--------- 71 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANS--------- 71 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSS---------
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCcccccc---------
Confidence 457789999999999999999999998765444445443322 33455543 678899999985432110
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTD 215 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d 215 (330)
....++..++ ..++
T Consensus 72 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 87 (188)
T 2wjg_A 72 ----------------------------------------------------------------IDEIIARDYIINEKPD 87 (188)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHCCS
T ss_pred ----------------------------------------------------------------HHHHHHHHHHhccCCC
Confidence 0011222333 3589
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
++++|+|.++ ++... .|+..+.. .+.|+++|+||+|+... +.+. ++++.+++.++ +++++
T Consensus 88 ~~i~v~d~~~---~~~~~-~~~~~~~~--~~~piilv~nK~Dl~~~------------~~~~-~~~~~~~~~~~-~~~~~ 147 (188)
T 2wjg_A 88 LVVNIVDATA---LERNL-YLTLQLME--MGANLLLALNKMDLAKS------------LGIE-IDVDKLEKILG-VKVVP 147 (188)
T ss_dssp EEEEEEEGGG---HHHHH-HHHHHHHT--TTCCEEEEEECHHHHHH------------TTCC-CCHHHHHHHHT-SCEEE
T ss_pred EEEEEecchh---HHHHH-HHHHHHHh--cCCCEEEEEEhhhcccc------------ccch-HHHHHHHHHhC-CCeEE
Confidence 9999999986 44554 57766655 47899999999999643 3333 45678888887 69999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
+||++|.|++++|+.+++.+.+..
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EEecCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999987665
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=2.1e-22 Score=174.82 Aligned_cols=170 Identities=13% Similarity=0.098 Sum_probs=115.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCc-eeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT-VFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|||||||+++|++..+.....+. ........... ....+.+|||+|+......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~------------ 92 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFE------------ 92 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGG------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccc------------
Confidence 56799999999999999999999998764222111 11111112222 2367888999998221000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc----cccccCccccCCC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED----YDRLRPLSYPQTD 215 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~----~~~~~~~~~~~~d 215 (330)
++ +..+. .++..+|
T Consensus 93 -------------------------------------------------------------~~~~~~~~~~~-~~~~~~d 110 (228)
T 2qu8_A 93 -------------------------------------------------------------NRNTIEMTTIT-ALAHING 110 (228)
T ss_dssp -------------------------------------------------------------GCCHHHHHHHH-HHHTSSE
T ss_pred -------------------------------------------------------------hhhhHHHHHHH-Hhhcccc
Confidence 11 22222 2366789
Q ss_pred EEEEEEEcCChhhHhhhh-hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH---HHHHHHHHhC-C
Q psy9997 216 VFLVCFSVVSPSSFENVK-EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE---QGEKLAKELK-A 290 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~-~ 290 (330)
++++|||++++.+|.... ..|+..+.....+.|+++|+||+|+... +.+..+ ++..+++..+ .
T Consensus 111 ~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 111 VILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM------------DSLSIDNKLLIKQILDNVKNP 178 (228)
T ss_dssp EEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--------------CCCHHHHHHHHHHHHHCCSC
T ss_pred EEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc------------hhhHHHHHHHHHHHHHhcCCC
Confidence 999999999998886321 1567777666568999999999999764 445543 4566666653 2
Q ss_pred eeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 291 VKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
++++++||++|.|++++|+.+++.+.+.
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=4.2e-23 Score=171.48 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=112.5
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+..+ ...+.++..+.+...+.+++. .+.+|||+|++.+....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~----------- 69 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEV----------- 69 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHH-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHH-----------
Confidence 457999999999999999999998764 344444444445567777764 47899999984321000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~i 218 (330)
+.+. .....+++.+|+++
T Consensus 70 -------------------------------------------------------------~~~~~~~~~~~~~~ad~~i 88 (172)
T 2gj8_A 70 -------------------------------------------------------------ERIGIERAWQEIEQADRVL 88 (172)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHTCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhCCEEE
Confidence 1000 00112467899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
+|||++++.+++.. .|+..+.+.. .++|+++|+||+|+..+. .. +++..+ .+++++|
T Consensus 89 ~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-----------~~--------~~~~~~-~~~~~~S 146 (172)
T 2gj8_A 89 FMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITGET-----------LG--------MSEVNG-HALIRLS 146 (172)
T ss_dssp EEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHCCC-----------CE--------EEEETT-EEEEECC
T ss_pred EEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCcch-----------hh--------hhhccC-CceEEEe
Confidence 99999999998754 5777776654 479999999999995431 00 111233 6899999
Q ss_pred eccCCCHHHHHHHHHHHhcC
Q psy9997 298 ALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~ 317 (330)
|++|.|++++|+.+.+.+-.
T Consensus 147 A~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999887643
No 117
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=1.3e-22 Score=171.27 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=105.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
...+||+++|++|+|||||+++|.++.|...+.++.+..... ....++ .+.+|||+|......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~------------- 84 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKV------------- 84 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSS-------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCcccc-------------
Confidence 346899999999999999999999998777776766655433 333333 578888888411000
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCC---CE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT---DV 216 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~---d~ 216 (330)
+...++.+..+...+++.+ |+
T Consensus 85 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1svi_A 85 --------------------------------------------------------SKSEREAWGRMIETYITTREELKA 108 (195)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred --------------------------------------------------------CHHHHHHHHHHHHHHHhhhhcCCE
Confidence 0000244555555566555 99
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC--HHHHHH-HHHHhCCeeE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS--FEQGEK-LAKELKAVKY 293 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~--~~~~~~-~~~~~~~~~~ 293 (330)
+++|+|++++.++.+.. ++..+.. .+.|+++|+||+|+... +.+. .+++.+ ++... ..++
T Consensus 109 ~i~v~d~~~~~~~~~~~--~~~~~~~--~~~p~i~v~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 171 (195)
T 1svi_A 109 VVQIVDLRHAPSNDDVQ--MYEFLKY--YGIPVIVIATKADKIPK------------GKWDKHAKVVRQTLNIDP-EDEL 171 (195)
T ss_dssp EEEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCG------------GGHHHHHHHHHHHHTCCT-TSEE
T ss_pred EEEEEECCCCCCHHHHH--HHHHHHH--cCCCEEEEEECcccCCh------------HHHHHHHHHHHHHHcccC-CCce
Confidence 99999999988887753 3333333 57899999999999764 2222 123333 22222 3689
Q ss_pred EEEeeccCCCHHHHHHHHHHHhc
Q psy9997 294 VECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 294 ~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+++||++|.|++++|+.+.+.+-
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999988763
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=1.1e-22 Score=166.12 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=105.2
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.||+++|++|+|||||++++.+..+. ..+.++..+.+...+..++. .+.+|||+|++.+..+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~------------- 66 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWE------------- 66 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCC-------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchH-------------
Confidence 58999999999999999999988753 33333333334445555554 67899999984322100
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
..+......+++.+|++++||
T Consensus 67 -----------------------------------------------------------~~~~~~~~~~~~~~~~~i~v~ 87 (161)
T 2dyk_A 67 -----------------------------------------------------------KKIQEKVDRALEDAEVVLFAV 87 (161)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHTTTCSEEEEEE
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHhCCEEEEEE
Confidence 223344455678899999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|++++.+.... .+...+.. .+.|+++|+||+|+.... +++.+++ .++..+++++||++|
T Consensus 88 d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~----------------~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 88 DGRAELTQADY--EVAEYLRR--KGKPVILVATKVDDPKHE----------------LYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp ESSSCCCHHHH--HHHHHHHH--HTCCEEEEEECCCSGGGG----------------GGCGGGG-GGSSCSCEECBTTTT
T ss_pred ECCCcccHhHH--HHHHHHHh--cCCCEEEEEECcccccch----------------HhHHHHH-hCCCCCeEEEecccC
Confidence 99986554332 22333333 478999999999997531 2233444 556347999999999
Q ss_pred CCHHHHHHHHHHHh
Q psy9997 302 KGLKNVFDEAILAA 315 (330)
Q Consensus 302 ~~v~~~f~~l~~~i 315 (330)
.|++++|+.+++.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 99999999998764
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=2.1e-22 Score=169.55 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=117.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+||+++|++|+|||||+++|.+.. ...+.++.+.......... ...+.+|||+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~--~~~~~i~Dt~G~~~----------------- 80 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLV--NSKYYFVDLPGYGY----------------- 80 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEE--TTTEEEEECCCBSS-----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEE--CCcEEEEECCCCcc-----------------
Confidence 346899999999999999999999987 3444555554443322221 23467889888510
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCC---CEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQT---DVF 217 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~---d~~ 217 (330)
..|+..+++.+..+...+++.+ |++
T Consensus 81 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 108 (195)
T 3pqc_A 81 ----------------------------------------------------AKVSKKERMLWKRLVEDYFKNRWSLQMV 108 (195)
T ss_dssp ----------------------------------------------------SCCCHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ----------------------------------------------------ccCChhhHHHHHHHHHHHHhcCcCceEE
Confidence 1122333455666666666555 899
Q ss_pred EEEEEcCChhhHhhhh-hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVK-EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|+|.++..+..... ..|+... +.|+++|+||+|+..+.. +....++++.++...+.++++++
T Consensus 109 i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 3pqc_A 109 FLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSE----------RAKKLEEHRKVFSKYGEYTIIPT 173 (195)
T ss_dssp EEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGG----------HHHHHHHHHHHHHSSCCSCEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHH----------HHHHHHHHHHHHhhcCCCceEEE
Confidence 9999998764443332 0333332 789999999999975421 34556677788887666799999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++|+.+.+.+.+
T Consensus 174 Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 174 SSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHC-
T ss_pred ecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999988754
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.83 E-value=1.8e-21 Score=173.34 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=111.7
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+||+++|++|||||||+++|++..+.....| |..+ .....++. ...+.+|||||++.+....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~------------- 66 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS------------- 66 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCC-------------
Confidence 57999999999999999999998764333223 2222 22333444 6678889998884432110
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcccc--CCCEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYP--QTDVFLV 219 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~--~~d~~il 219 (330)
....+...++. ++|++++
T Consensus 67 ------------------------------------------------------------~~e~v~~~~~~~~~~d~vi~ 86 (272)
T 3b1v_A 67 ------------------------------------------------------------PEAKVARDYLLSQRADSILN 86 (272)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTCCSEEEE
T ss_pred ------------------------------------------------------------hHHHHHHHHHhcCCCCEEEE
Confidence 00012233333 6999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|||+++.+++. .|..++.+ .+.|+++|+||+|+... +.+. .++..+++.++ ++++++||+
T Consensus 87 V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~vi~~SA~ 146 (272)
T 3b1v_A 87 VVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDG------------QGKK-INVDKLSYHLG-VPVVATSAL 146 (272)
T ss_dssp EEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHH------------TTCC-CCHHHHHHHHT-SCEEECBTT
T ss_pred EecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCc------------CCcH-HHHHHHHHHcC-CCEEEEEcc
Confidence 99999876553 35455544 47999999999999643 3333 35678888888 799999999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+.+.+-.
T Consensus 147 ~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTBSHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999887643
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.83 E-value=3.6e-21 Score=170.29 Aligned_cols=162 Identities=21% Similarity=0.221 Sum_probs=113.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
+..+||+++|++|||||||+++|++..+.....|.+.... ....+......+.+|||||++.+.+.+.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------- 70 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEK-KEGVFTYKGYTINLIDLPGTYSLGYSSI----------- 70 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEE-EEEEEEETTEEEEEEECCCCSSCCSSSH-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEE-EEEEEEECCeEEEEEECCCcCccCCCCH-----------
Confidence 5678999999999999999999998876433333222111 1222223346788999999844332110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVFL 218 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~i 218 (330)
+ ..+...++ ..+|+++
T Consensus 71 ------------------------------------------------------------~--e~v~~~~~~~~~~d~ii 88 (258)
T 3a1s_A 71 ------------------------------------------------------------D--EKIARDYLLKGDADLVI 88 (258)
T ss_dssp ------------------------------------------------------------H--HHHHHHHHHHSCCSEEE
T ss_pred ------------------------------------------------------------H--HHHHHHHHhhcCCCEEE
Confidence 0 01112233 5799999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|+|.++.++... |...+... +.|+++|+||+|+... +.+. .++..+++.++ ++++++||
T Consensus 89 ~V~D~t~~~~~~~----~~~~l~~~--~~pvilv~NK~Dl~~~------------~~i~-~~~~~l~~~lg-~~vi~~SA 148 (258)
T 3a1s_A 89 LVADSVNPEQSLY----LLLEILEM--EKKVILAMTAIDEAKK------------TGMK-IDRYELQKHLG-IPVVFTSS 148 (258)
T ss_dssp EEEETTSCHHHHH----HHHHHHTT--TCCEEEEEECHHHHHH------------TTCC-BCHHHHHHHHC-SCEEECCT
T ss_pred EEeCCCchhhHHH----HHHHHHhc--CCCEEEEEECcCCCCc------------cchH-HHHHHHHHHcC-CCEEEEEe
Confidence 9999998765433 44455443 7999999999999653 3333 24678888888 79999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999998775
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=1.4e-20 Score=170.81 Aligned_cols=175 Identities=18% Similarity=0.125 Sum_probs=126.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
.+...-.|+++|.+|+|||||+++|++.++.. ....|........... +....+.+|||||+..+...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~--------- 75 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKS--------- 75 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTT---------
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccc---------
Confidence 34556789999999999999999999988743 2222222222222222 22567889999998321100
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
+.. .+.+......+++.+|+
T Consensus 76 -----------------------------------------------------------~~l-~~~~~~~~~~~l~~aD~ 95 (308)
T 3iev_A 76 -----------------------------------------------------------DVL-GHSMVEIAKQSLEEADV 95 (308)
T ss_dssp -----------------------------------------------------------CHH-HHHHHHHHHHHHHHCSE
T ss_pred -----------------------------------------------------------hhH-HHHHHHHHHHHhhcCCE
Confidence 000 03344455667889999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVE 295 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e 295 (330)
+++|+|++++.++.+.. .|+..+.. .+.|+++|+||+|+... +....+....+.+.++ ..++++
T Consensus 96 il~VvD~~~~~~~~~~~-~~~~~l~~--~~~pvilV~NK~Dl~~~------------~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 96 ILFMIDATEGWRPRDEE-IYQNFIKP--LNKPVIVVINKIDKIGP------------AKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp EEEEEETTTBSCHHHHH-HHHHHTGG--GCCCEEEEEECGGGSSS------------GGGGHHHHHHHHHHCTTCCCEEE
T ss_pred EEEEEeCCCCCCchhHH-HHHHHHHh--cCCCEEEEEECccCCCC------------HHHHHHHHHHHHHhccCCCeEEE
Confidence 99999999999998887 67877776 37999999999999743 4456677778888773 467999
Q ss_pred EeeccCCCHHHHHHHHHHHhcCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+||++|.|++++|+.+...+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EeCCCCCCHHHHHHHHHHhCccC
Confidence 99999999999999999988654
No 123
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.82 E-value=2.9e-20 Score=171.10 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=91.2
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCC----------hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~ 261 (330)
+||++||++++..+..++++++++|+|||+++ ..++++.. .|+..+... ..++|+||||||+|+..+
T Consensus 197 iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~DL~~~ 275 (353)
T 1cip_A 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKKDLFEE 275 (353)
T ss_dssp EEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred EEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECcCchhh
Confidence 34444447777777788888888888888887 56788887 787777653 468999999999999643
Q ss_pred chh---hHHhhhCCCCCcCHHHHHHHHHH----------hCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 262 APT---LEKLAKNKQKPISFEQGEKLAKE----------LKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 262 ~~~---~~~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
... ....-++....++.+++..++.. ...+.+++|||++|.||+++|.++.+.+++.
T Consensus 276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 110 11111223345788999999873 2347899999999999999999999988753
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.2e-21 Score=168.50 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=100.6
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC---CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+||+++|++|+|||||+++|.+..+.. .+.|+++..+ ....+.+|||+|+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~---------------- 65 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGH---------------- 65 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCC----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCc----------------
Confidence 456899999999999999999999988654 3455554433 4456667777776
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC----
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---- 213 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---- 213 (330)
+.+...+..+++.
T Consensus 66 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 66 ---------------------------------------------------------------VKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp ---------------------------------------------------------------GGGTHHHHHHHHHHGGG
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHhcccc
Confidence 4444444445554
Q ss_pred CCEEEEEEEcC-ChhhHhhhhhcchhhhhhc-----CCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 214 TDVFLVCFSVV-SPSSFENVKEKWVPEITHH-----CQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 214 ~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
+|++++|||++ ++.+|..+. .|+.++... ..++|+++|+||+|+...... ++. .....+++..++..
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~-----~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTARPP-SKI-----KDALESEIQKVIER 155 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH-HHH-----HHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcccCCH-HHH-----HHHHHHHHHHHHHH
Confidence 89999999999 999999998 777776553 258999999999999765110 000 11125667788877
Q ss_pred hCCeeEEEEeeccCCC
Q psy9997 288 LKAVKYVECSALTQKG 303 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~ 303 (330)
.+ ..|+++||++|.+
T Consensus 156 ~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RK-KSLNEVERKINEE 170 (218)
T ss_dssp HH-HHHHC--------
T ss_pred Hh-ccccccccccccc
Confidence 76 6899999998875
No 125
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.81 E-value=3.9e-20 Score=167.91 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=77.9
Q ss_pred cccccccCccccCCCEEEEEEE----------cCChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchh---h
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFS----------VVSPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPT---L 265 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d----------~~~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~---~ 265 (330)
++++.++..+|++++++|+||| .++..+|++.. .|+..+... ..++|++|+|||+|+..+... .
T Consensus 178 e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l 256 (327)
T 3ohm_A 178 RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHL 256 (327)
T ss_dssp HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCG
T ss_pred hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECchhhhhhhccchH
Confidence 4444444444444444444443 34677788777 677776543 368999999999999753211 1
Q ss_pred HHhhhCCCC-CcCHHHHHHHHH----------HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCCC
Q psy9997 266 EKLAKNKQK-PISFEQGEKLAK----------ELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 266 ~~~~~~~~~-~v~~~~~~~~~~----------~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~ 319 (330)
...-++... .++.+++.+|+. ..+ +.++++||+++.||+++|..+.+.+++..
T Consensus 257 ~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 257 VDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp GGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 111122222 578899999854 333 78899999999999999999999998643
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=7.5e-21 Score=163.97 Aligned_cols=178 Identities=12% Similarity=0.027 Sum_probs=109.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEEC-CceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|++..+.....++.+.... ....+. .....+.+|||+|.......
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----------- 95 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVP----------- 95 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCC-----------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCC-----------
Confidence 45689999999999999999999988732222222222222 233333 44567889999986210000
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC---CC
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---TD 215 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---~d 215 (330)
..-++.+......+++. +|
T Consensus 96 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~d 117 (223)
T 4dhe_A 96 ----------------------------------------------------------GAAKAHWEQLLSSYLQTRPQLC 117 (223)
T ss_dssp ----------------------------------------------------------STHHHHHHHHHHHHHHHCTTEE
T ss_pred ----------------------------------------------------------hhhHHHHHHHHHHHHhcCcCcC
Confidence 00013333333334433 78
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh------C
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL------K 289 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~ 289 (330)
++++|+|.+++.+.... .|+..+.. .+.|+++|+||+|+...... ....++..+....+ .
T Consensus 118 ~vi~v~d~~~~~~~~~~--~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~l~~~~~~~~~~ 183 (223)
T 4dhe_A 118 GMILMMDARRPLTELDR--RMIEWFAP--TGKPIHSLLTKCDKLTRQES----------INALRATQKSLDAYRDAGYAG 183 (223)
T ss_dssp EEEEEEETTSCCCHHHH--HHHHHHGG--GCCCEEEEEECGGGSCHHHH----------HHHHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEEeCCCCCCHHHH--HHHHHHHh--cCCCEEEEEeccccCChhhH----------HHHHHHHHHHHHhhhhcccCC
Confidence 89999999876443332 35555554 47899999999999764210 00112223333332 4
Q ss_pred CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 290 AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 290 ~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
..+++++||++|.|++++|+.+.+.+.....+
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence 47899999999999999999999988665443
No 127
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=4.9e-21 Score=169.20 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=110.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.||+++|++|||||||+++|++..+.....|++. +.....+..++. .+.+|||||+..+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~------------ 67 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEG------------ 67 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-----------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccC------------
Confidence 3799999999999999999998875443334443 223335555554 7889999998443211000
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVFLVC 220 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~ilv 220 (330)
. .....+...++ .++|++++|
T Consensus 68 -------~--------------------------------------------------~~~e~i~~~~~~~~~~d~vi~V 90 (256)
T 3iby_A 68 -------I--------------------------------------------------SQDEQIAAQSVIDLEYDCIINV 90 (256)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHSCCSEEEEE
T ss_pred -------C--------------------------------------------------CHHHHHHHHHHhhCCCCEEEEE
Confidence 0 00011233344 789999999
Q ss_pred EEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeecc
Q psy9997 221 FSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT 300 (330)
Q Consensus 221 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 300 (330)
+|+++.+++..+. .++.++ +.|+++|+||+|+... +.+. .....+++.++ ++++++||++
T Consensus 91 vDas~~~~~~~l~-~~l~~~-----~~pvilv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~vi~~SA~~ 150 (256)
T 3iby_A 91 IDACHLERHLYLT-SQLFEL-----GKPVVVALNMMDIAEH------------RGIS-IDTEKLESLLG-CSVIPIQAHK 150 (256)
T ss_dssp EEGGGHHHHHHHH-HHHTTS-----CSCEEEEEECHHHHHH------------TTCE-ECHHHHHHHHC-SCEEECBGGG
T ss_pred eeCCCchhHHHHH-HHHHHc-----CCCEEEEEEChhcCCc------------CCcH-HHHHHHHHHcC-CCEEEEECCC
Confidence 9999987777665 343332 7899999999999653 2221 12455778887 7999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy9997 301 QKGLKNVFDEAILA 314 (330)
Q Consensus 301 ~~~v~~~f~~l~~~ 314 (330)
|.|++++|+.+.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
No 128
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=3.9e-21 Score=171.61 Aligned_cols=167 Identities=11% Similarity=0.090 Sum_probs=113.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCcee-ecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|++++|+++|++|+|||||+++|++..+.....|++. +.....+...+ ..+.+|||||++.+..+...+
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~-------- 70 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQT-------- 70 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----C--------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccC--------
Confidence 5679999999999999999999998876444344332 22233444444 456789999985544221100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc--ccCCCEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS--YPQTDVF 217 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~--~~~~d~~ 217 (330)
.....+...+ .+.+|++
T Consensus 71 -------------------------------------------------------------~~~e~i~~~~~~~~~~d~i 89 (274)
T 3i8s_A 71 -------------------------------------------------------------SLDEQIACHYILSGDADLL 89 (274)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHTCCSEE
T ss_pred -------------------------------------------------------------CHHHHHHHHHHhhcCCCEE
Confidence 0000111122 3689999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|+|.++.+.+..+. .++ .+. +.|+++|+||+|+... +.+. .+...+++.++ ++++++|
T Consensus 90 i~VvD~~~~~~~~~~~-~~l---~~~--~~p~ivv~NK~Dl~~~------------~~~~-~~~~~l~~~lg-~~~i~~S 149 (274)
T 3i8s_A 90 INVVDASNLERNLYLT-LQL---LEL--GIPCIVALNMLDIAEK------------QNIR-IEIDALSARLG-CPVIPLV 149 (274)
T ss_dssp EEEEEGGGHHHHHHHH-HHH---HHH--TCCEEEEEECHHHHHH------------TTEE-ECHHHHHHHHT-SCEEECC
T ss_pred EEEecCCChHHHHHHH-HHH---Hhc--CCCEEEEEECccchhh------------hhHH-HHHHHHHHhcC-CCEEEEE
Confidence 9999999977665554 333 332 7999999999999643 2221 23466788887 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+.+.+.+.+.
T Consensus 150 A~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999988776544
No 129
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.80 E-value=1.5e-19 Score=164.66 Aligned_cols=120 Identities=15% Similarity=0.126 Sum_probs=84.3
Q ss_pred cccccccccccCccccCCCEEEEEEEcC----------ChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCCCchh
Q psy9997 197 TAGQEDYDRLRPLSYPQTDVFLVCFSVV----------SPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLREDAPT 264 (330)
Q Consensus 197 ~~g~e~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~~~~~ 264 (330)
++||++++.++..+|++++++|+|||++ +..+|++.. .|+..+... ..++|++|||||+|+..+...
T Consensus 168 taGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~-~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~ 246 (340)
T 4fid_A 168 VGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESI-AVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLT 246 (340)
T ss_dssp CCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHH-HHHHHHHHCGGGTTSEEEEEEECHHHHHHHHH
T ss_pred CCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHH-HHHHHHhhhhccCCCeEEEEEECchhhhhhcC
Confidence 3333666666666666777777777776 778888887 677766553 368999999999999753221
Q ss_pred hHH---hhhCCCCCcCHHHHHHHHHH-h-------------------------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 265 LEK---LAKNKQKPISFEQGEKLAKE-L-------------------------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 265 ~~~---~~~~~~~~v~~~~~~~~~~~-~-------------------------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
... .-++.....+.+++.+|+.. + ..+.++++||+++.||+.+|..+.+.|
T Consensus 247 ~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 247 KVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp HSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHH
Confidence 111 11233334578888777653 2 237789999999999999999999988
Q ss_pred cC
Q psy9997 316 LE 317 (330)
Q Consensus 316 ~~ 317 (330)
++
T Consensus 327 l~ 328 (340)
T 4fid_A 327 MK 328 (340)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=5.6e-20 Score=166.12 Aligned_cols=167 Identities=17% Similarity=0.131 Sum_probs=112.0
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC--CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
.+..+|+++|++|+|||||+++|++.++.. ....|......... ......+.+|||||+.......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~--~~~~~~l~l~DTpG~~~~~~~l---------- 72 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL--TEGRRQIVFVDTPGLHKPMDAL---------- 72 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE--EETTEEEEEEECCCCCCCCSHH----------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE--EeCCcEEEEecCccccchhhHH----------
Confidence 456789999999999999999999988742 22233332222222 2345678899999983211000
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFL 218 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~i 218 (330)
.+.+......+++.+|+++
T Consensus 73 -------------------------------------------------------------~~~~~~~~~~~l~~ad~il 91 (301)
T 1wf3_A 73 -------------------------------------------------------------GEFMDQEVYEALADVNAVV 91 (301)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHTSSCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhcCCEEE
Confidence 0223444556788999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.+..+. .++..+.....+.|+++|+||+|+... +....+.++.+ .+..+++++||
T Consensus 92 ~VvD~~~~~~~~~~--~i~~~l~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~---~~~~~~~~iSA 154 (301)
T 1wf3_A 92 WVVDLRHPPTPEDE--LVARALKPLVGKVPILLVGNKLDAAKY------------PEEAMKAYHEL---LPEAEPRMLSA 154 (301)
T ss_dssp EEEETTSCCCHHHH--HHHHHHGGGTTTSCEEEEEECGGGCSS------------HHHHHHHHHHT---STTSEEEECCT
T ss_pred EEEECCCCCChHHH--HHHHHHHhhcCCCCEEEEEECcccCCc------------hHHHHHHHHHh---cCcCcEEEEeC
Confidence 99999987555432 234556655468999999999999754 11011222222 23357999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+...+.+
T Consensus 155 ~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 155 LDERQVAELKADLLALMPE 173 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHhccc
Confidence 9999999999999887643
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=2.9e-20 Score=165.73 Aligned_cols=164 Identities=18% Similarity=0.123 Sum_probs=113.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|+.+||+++|++|+|||||+++|++..+.....|++.... ...+..++. .+.+|||||+..+.....
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~---------- 68 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSI---------- 68 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCH----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCH----------
Confidence 4678999999999999999999999876444445443333 234455543 488899999843221100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccc--cCCCEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSY--PQTDVF 217 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~--~~~d~~ 217 (330)
+ ......++ .++|++
T Consensus 69 -------------------------------------------------------------~--~~~~~~~~~~~~~d~v 85 (271)
T 3k53_A 69 -------------------------------------------------------------D--ELIARNFILDGNADVI 85 (271)
T ss_dssp -------------------------------------------------------------H--HHHHHHHHHTTCCSEE
T ss_pred -------------------------------------------------------------H--HHHHHHhhhccCCcEE
Confidence 0 01222233 679999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS 297 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 297 (330)
++|+|.++.+.. + .|...+... ...|+++|+||+|+... +.+.. +...+++.++ ++++++|
T Consensus 86 i~v~D~~~~~~~--~--~~~~~~~~~-~~~p~ilv~NK~Dl~~~------------~~~~~-~~~~l~~~lg-~~~~~~S 146 (271)
T 3k53_A 86 VDIVDSTCLMRN--L--FLTLELFEM-EVKNIILVLNKFDLLKK------------KGAKI-DIKKMRKELG-VPVIPTN 146 (271)
T ss_dssp EEEEEGGGHHHH--H--HHHHHHHHT-TCCSEEEEEECHHHHHH------------HTCCC-CHHHHHHHHS-SCEEECB
T ss_pred EEEecCCcchhh--H--HHHHHHHhc-CCCCEEEEEEChhcCcc------------cccHH-HHHHHHHHcC-CcEEEEE
Confidence 999999986432 2 244444433 23999999999998643 22222 2667888888 7999999
Q ss_pred eccCCCHHHHHHHHHHHhcCC
Q psy9997 298 ALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 298 a~~~~~v~~~f~~l~~~i~~~ 318 (330)
|++|.|++++|+.+...+-+.
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTC
T ss_pred eCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999887654
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=1.4e-19 Score=172.85 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=99.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+.. +...+.+|..+.+...+.+++ ..+.+|||+|++.+....
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~v----------- 298 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEI----------- 298 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHH-----------
Confidence 35899999999999999999999875 344555555555556677766 468899999984432211
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccc-ccccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDY-DRLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~-~~~~~~~~~~~d~~i 218 (330)
+.+ -.....+++.+|+++
T Consensus 299 -------------------------------------------------------------e~~gi~~~~~~~~~aD~vl 317 (476)
T 3gee_A 299 -------------------------------------------------------------EHEGIRRSRMKMAEADLIL 317 (476)
T ss_dssp ----------------------------------------------------------------------CCCSSCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHhhcccCCEEE
Confidence 111 012344678999999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.+++++. .+...+.. ..+.|+++|+||+|+... +.. +.+.+.+... .+++++||
T Consensus 318 ~VvD~s~~~s~~~~~-~~~~~l~~-l~~~piIvV~NK~Dl~~~------------~~~---~~~~l~~~~~-~~~i~vSA 379 (476)
T 3gee_A 318 YLLDLGTERLDDELT-EIRELKAA-HPAAKFLTVANKLDRAAN------------ADA---LIRAIADGTG-TEVIGISA 379 (476)
T ss_dssp EEEETTTCSSGGGHH-HHHHHHHH-CTTSEEEEEEECTTSCTT------------THH---HHHHHHHHHT-SCEEECBT
T ss_pred EEEECCCCcchhhhH-HHHHHHHh-cCCCCEEEEEECcCCCCc------------cch---hHHHHHhcCC-CceEEEEE
Confidence 999999999986433 22222222 237999999999999764 222 1234444422 68999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=6.1e-20 Score=172.66 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=114.1
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
.....+||+++|+.|+|||||+++|++..+. ..+..+..+.....+...+. ..+.+|||+|++.+..+..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~------- 101 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGR------- 101 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCC-------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhH-------
Confidence 3456789999999999999999999998763 33444444445556666554 2788999999855443321
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
.+.. ....+++.+|+
T Consensus 102 ----------------------------------------------------------------~~~~-~~~~~l~~aD~ 116 (423)
T 3qq5_A 102 ----------------------------------------------------------------LRVE-KARRVFYRADC 116 (423)
T ss_dssp ----------------------------------------------------------------CCHH-HHHHHHTSCSE
T ss_pred ----------------------------------------------------------------HHHH-HHHHHHhcCCE
Confidence 1111 12335778999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+++|||++..+.. . .|+..+.+. +.|+++|+||+|+..+ +.. +.++.+++.++ ++++++
T Consensus 117 vllVvD~~~~~~~---~-~~l~~l~~~--~~piIvV~NK~Dl~~~------------~~~--~~~~~l~~~~g-~~v~~v 175 (423)
T 3qq5_A 117 GILVTDSAPTPYE---D-DVVNLFKEM--EIPFVVVVNKIDVLGE------------KAE--ELKGLYESRYE-AKVLLV 175 (423)
T ss_dssp EEEECSSSCCHHH---H-HHHHHHHHT--TCCEEEECCCCTTTTC------------CCT--HHHHHSSCCTT-CCCCCC
T ss_pred EEEEEeCCChHHH---H-HHHHHHHhc--CCCEEEEEeCcCCCCc------------cHH--HHHHHHHHHcC-CCEEEE
Confidence 9999998433222 2 566666664 8999999999999865 222 66677777777 699999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++|.|++++|+.+.+.+.+.
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999998654
No 134
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.76 E-value=9e-19 Score=158.33 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=109.5
Q ss_pred EEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccc
Q psy9997 78 CLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNR 156 (330)
Q Consensus 78 sl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 156 (330)
+|+.+|+.+.|. ..|.||+|+.+...+..++ .+.+||+ +
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--q----------------------------------- 71 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--L----------------------------------- 71 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--C-----------------------------------
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--c-----------------------------------
Confidence 799999999998 8999999987764432222 6778887 6
Q ss_pred ccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEEEcCChh-hHhhhhhc
Q psy9997 157 KLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEK 235 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~ 235 (330)
++|+.+++.+++++|++++|||++++. +|+.+. .
T Consensus 72 --------------------------------------------er~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~-~ 106 (301)
T 1u0l_A 72 --------------------------------------------HRKNLLTKPHVANVDQVILVVTVKMPETSTYIID-K 106 (301)
T ss_dssp --------------------------------------------CCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH-H
T ss_pred --------------------------------------------cccceeeccccccCCEEEEEEeCCCCCCCHHHHH-H
Confidence 667777788899999999999999997 788887 8
Q ss_pred chhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC-eeEEEEeeccCCCHHHHHHHHHH
Q psy9997 236 WVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA-VKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 236 ~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
|+..+.. .++|+++|+||+|+..+ +.+ +++.++++.++. .+|+++||++|.|++++|..+..
T Consensus 107 ~l~~~~~--~~~piilv~NK~DL~~~------------~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 107 FLVLAEK--NELETVMVINKMDLYDE------------DDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHH--TTCEEEEEECCGGGCCH------------HHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHH--CCCCEEEEEeHHHcCCc------------hhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 9988765 48999999999999753 222 557778877753 58999999999999999987653
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=4.7e-19 Score=169.38 Aligned_cols=158 Identities=23% Similarity=0.302 Sum_probs=115.4
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCc-cccccCCCCCCCCceEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~l~~~~~~~~~~~i 139 (330)
.+||+++|++|+|||||+++|.+.. +...+..|.-+.....+.+++. .+.+|||+|++ .+....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~v----------- 309 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLV----------- 309 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTC-----------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhH-----------
Confidence 3899999999999999999999875 3566666666666677777764 57899999984 322111
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccc-cccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYD-RLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~-~~~~~~~~~~d~~i 218 (330)
+.+. .....+++.+|+++
T Consensus 310 -------------------------------------------------------------e~~gi~~~~~~~~~aD~vl 328 (482)
T 1xzp_A 310 -------------------------------------------------------------ERLGIERTLQEIEKADIVL 328 (482)
T ss_dssp -------------------------------------------------------------CCCCHHHHHHHHHHCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhhcccEEE
Confidence 1110 11123577899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|||++++.++++.. ++..+ .+.|+++|+||+|+... +..+++..++. .+ .+++++||
T Consensus 329 ~VvD~s~~~s~~~~~--il~~l----~~~piivV~NK~DL~~~--------------~~~~~~~~~~~-~~-~~~i~iSA 386 (482)
T 1xzp_A 329 FVLDASSPLDEEDRK--ILERI----KNKRYLVVINKVDVVEK--------------INEEEIKNKLG-TD-RHMVKISA 386 (482)
T ss_dssp EEEETTSCCCHHHHH--HHHHH----TTSSEEEEEEECSSCCC--------------CCHHHHHHHHT-CS-TTEEEEEG
T ss_pred EEecCCCCCCHHHHH--HHHHh----cCCCEEEEEECcccccc--------------cCHHHHHHHhc-CC-CcEEEEEC
Confidence 999999998887754 33333 47899999999999642 33445544432 22 57999999
Q ss_pred ccCCCHHHHHHHHHHHhc
Q psy9997 299 LTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~ 316 (330)
++|.|++++|+.+.+.+.
T Consensus 387 ktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GGTCCHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988765
No 136
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.74 E-value=1.4e-18 Score=160.76 Aligned_cols=168 Identities=22% Similarity=0.227 Sum_probs=114.2
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCC-CCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
..++++++|++|+|||||++++.+..+... +..+........+.. ....+.+|||+|......
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~-------------- 229 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED--GYFRYQIIDTPGLLDRPI-------------- 229 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE--TTEEEEEEECTTTSSSCS--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe--cCceEEEEeCCCccccch--------------
Confidence 457899999999999999999998764221 111111111111222 245688999999832110
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
|+..+.+. ... ..+...+|++++|
T Consensus 230 ------------------------------------------------------~~~~~~~~-~~~-~~~~~~ad~illV 253 (357)
T 2e87_A 230 ------------------------------------------------------SERNEIEK-QAI-LALRYLGNLIIYI 253 (357)
T ss_dssp ------------------------------------------------------TTSCHHHH-HHH-HGGGGTCSEEEEE
T ss_pred ------------------------------------------------------hhhhHHHH-HHH-HHHHhcCCEEEEE
Confidence 00000010 111 1234568999999
Q ss_pred EEcCChh--hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 221 FSVVSPS--SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 221 ~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|++++. +++... .|+..+.....+.|+++|+||+|+... .. .+++.++++..+ .+++++||
T Consensus 254 ~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~------------~~--~~~~~~~~~~~~-~~~~~iSA 317 (357)
T 2e87_A 254 FDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADE------------EN--IKRLEKFVKEKG-LNPIKISA 317 (357)
T ss_dssp ECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCH------------HH--HHHHHHHHHHTT-CCCEECBT
T ss_pred EeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCCh------------HH--HHHHHHHHHhcC-CCeEEEeC
Confidence 9999887 677776 788888776568999999999999753 11 245666777766 78999999
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy9997 299 LTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~ 317 (330)
++|.|++++|+.+...+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988743
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.74 E-value=3.4e-19 Score=163.36 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=115.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEe
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~ 142 (330)
.+|+++|.+|+|||||+++++..+.. ..|..|.-......+.+++ ...+.+|||+|+....
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a----------------- 220 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGA----------------- 220 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHT-----------------
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccc-----------------
Confidence 36889999999999999999987642 2333222111112233333 2467788888862100
Q ss_pred ccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc---ccCCCEEEE
Q psy9997 143 GNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS---YPQTDVFLV 219 (330)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~---~~~~d~~il 219 (330)
..+..+...+ ++.++++++
T Consensus 221 ----------------------------------------------------------~~~~~l~~~fl~~i~~~d~ll~ 242 (342)
T 1lnz_A 221 ----------------------------------------------------------HQGVGLGHQFLRHIERTRVIVH 242 (342)
T ss_dssp ----------------------------------------------------------TCTTTTHHHHHHHHHHCCEEEE
T ss_pred ----------------------------------------------------------cccchhHHHHHHHHHhccEEEE
Confidence 1112222223 345999999
Q ss_pred EEEcCC---hhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC-ee
Q psy9997 220 CFSVVS---PSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA-VK 292 (330)
Q Consensus 220 v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~ 292 (330)
|+|+++ +.+++++. .|+.++..+. .+.|+++|+||+|+... .+..+.+++.+.. .+
T Consensus 243 VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----------------~e~~~~l~~~l~~~~~ 305 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEA----------------AENLEAFKEKLTDDYP 305 (342)
T ss_dssp EEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTH----------------HHHHHHHHHHCCSCCC
T ss_pred EEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCC----------------HHHHHHHHHHhhcCCC
Confidence 999998 88999988 8999988764 47999999999999643 1345667776653 57
Q ss_pred EEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 293 YVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
++++||+++.|++++|+.+.+.+.+.+.
T Consensus 306 v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 306 VFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999977654
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=1.1e-18 Score=166.00 Aligned_cols=162 Identities=18% Similarity=0.123 Sum_probs=105.9
Q ss_pred EeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
.+|+++|.+|||||||+|+|++.++ ...++.+..+.....+..++. .+.+|||+|++....-
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~-------------- 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQD-------------- 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGG--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccc--------------
Confidence 3799999999999999999998874 344444444455556777765 4688999998431100
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.-++.+......+++.||++++|+
T Consensus 66 --------------------------------------------------------~~~~~~~~~~~~~~~~ad~il~V~ 89 (439)
T 1mky_A 66 --------------------------------------------------------IISQKMKEVTLNMIREADLVLFVV 89 (439)
T ss_dssp --------------------------------------------------------CCCHHHHHHHHHHHTTCSEEEEEE
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHHHhCCEEEEEE
Confidence 000344555667889999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH-HHHHHHhCCeeEEEEeecc
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG-EKLAKELKAVKYVECSALT 300 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~e~Sa~~ 300 (330)
|+++..+..+.. +...++. .+.|+++|+||+|+... . ..++ ..+. .++...++++||++
T Consensus 90 D~~~~~~~~d~~--i~~~l~~--~~~p~ilv~NK~D~~~~--------------~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 90 DGKRGITKEDES--LADFLRK--STVDTILVANKAENLRE--------------F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp ETTTCCCHHHHH--HHHHHHH--HTCCEEEEEESCCSHHH--------------H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred ECCCCCCHHHHH--HHHHHHH--cCCCEEEEEeCCCCccc--------------c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 998866654421 2222222 37899999999998421 0 1222 3443 34533689999999
Q ss_pred CCCHHHHHHHHHHHhcC
Q psy9997 301 QKGLKNVFDEAILAALE 317 (330)
Q Consensus 301 ~~~v~~~f~~l~~~i~~ 317 (330)
|.|++++|+.+...+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999988753
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=5.8e-19 Score=167.64 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=98.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEE
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 141 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v 141 (330)
..+|+++|.+|||||||+++|++.++.. ..++.|..... ...+.-....+.+|||+|++....
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--------------- 66 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--------------- 66 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcch---------------
Confidence 4689999999999999999999877531 12222322211 122222334677788877721000
Q ss_pred eccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEEE
Q psy9997 142 FGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCF 221 (330)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~ 221 (330)
.. .+.+......+++.||++++|+
T Consensus 67 ---------~~-----------------------------------------------~~~~~~~~~~~~~~ad~il~vv 90 (436)
T 2hjg_A 67 ---------PF-----------------------------------------------LAQIRQQAEIAMDEADVIIFMV 90 (436)
T ss_dssp ---------CH-----------------------------------------------HHHHHHHHHHHHHHCSEEEEEE
T ss_pred ---------hH-----------------------------------------------HHHHHHHHHHHHHhCCEEEEEE
Confidence 00 0345566667788999999999
Q ss_pred EcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccC
Q psy9997 222 SVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301 (330)
Q Consensus 222 d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 301 (330)
|+++..++.+.. +...+.. .+.|+++|+||+|+.... . ++.++. ..+...++++||++|
T Consensus 91 D~~~~~~~~d~~--~~~~l~~--~~~pvilv~NK~D~~~~~------------~----~~~~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 91 NGREGVTAADEE--VAKILYR--TKKPVVLAVNKLDNTEMR------------A----NIYDFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp ETTTCSCHHHHH--HHHHHTT--CCSCEEEEEECCCC---------------------CCCSSG-GGSSCCCEECBTTTT
T ss_pred eCCCCCCHHHHH--HHHHHHH--cCCCEEEEEECccCccch------------h----hHHHHH-HcCCCCeEEEeCcCC
Confidence 999887766532 3333433 478999999999996531 0 011122 234337899999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy9997 302 KGLKNVFDEAILAALE 317 (330)
Q Consensus 302 ~~v~~~f~~l~~~i~~ 317 (330)
.|++++|+++...+-+
T Consensus 150 ~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp BTHHHHHHHHHHTGGG
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988864
No 140
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.71 E-value=3.2e-18 Score=157.42 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=83.9
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcC----------ChhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV----------SPSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~ 260 (330)
.+||++||++++.++..++++++++|+|||++ +..+|+++. .|+..+... ..++|++|||||+|+..
T Consensus 186 ~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 186 RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLFLNKFDIFE 264 (354)
T ss_dssp EEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred EEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEEEECcchhh
Confidence 33444444666666677777777777777776 788999988 788777654 37899999999999954
Q ss_pred CchhhHHh-----hhCCC----CCcCHHHHHHHHHHh---------------CCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 261 DAPTLEKL-----AKNKQ----KPISFEQGEKLAKEL---------------KAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 261 ~~~~~~~~-----~~~~~----~~v~~~~~~~~~~~~---------------~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
+......+ -++.. ...+.+++.+|+... ..+.+++|||+++.||+++|+.+.+.++
T Consensus 265 ~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 265 KKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 31100000 00110 112467888885531 2345799999999999999999998886
Q ss_pred C
Q psy9997 317 E 317 (330)
Q Consensus 317 ~ 317 (330)
+
T Consensus 345 ~ 345 (354)
T 2xtz_A 345 R 345 (354)
T ss_dssp H
T ss_pred H
Confidence 4
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=3.1e-17 Score=154.45 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=77.8
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCC----hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|...+...+..+|++++|+|+++ +++++.+. .| .. ....|+++|+||+|+.....
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~----~~-l~~~~iivv~NK~Dl~~~~~--- 152 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-AL----EI-LGIDKIIIVQNKIDLVDEKQ--- 152 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-HH----HH-TTCCCEEEEEECTTSSCTTT---
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-HH----HH-cCCCeEEEEEEccCCCCHHH---
Confidence 45678888888887777777888999999999984 56666554 22 11 12358999999999976411
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.....+++.++++.. ...+++++||++|.|++++++.+...+..+..
T Consensus 153 -------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~ 201 (408)
T 1s0u_A 153 -------AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKR 201 (408)
T ss_dssp -------TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCC
T ss_pred -------HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 223456667776653 23689999999999999999999987765543
No 142
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=6e-19 Score=163.31 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=95.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccC-CCCCCCC--------Cceeecc-eEEEEECCceeeeeeeecCCC-------ccc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTN-KFPSEYV--------PTVFDNY-AVTVMIGGEPYTLGLFDTAGQ-------EDY 124 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~-~~~~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~-------~~~ 124 (330)
..++|+++|++|+|||||++++.+. .+...+. +|++..+ ...+..++....+.+|||+|+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3589999999999999999996654 4444432 4544333 223444566778999999998 222
Q ss_pred cccCC-------CCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccc
Q psy9997 125 DRLRP-------LSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDT 197 (330)
Q Consensus 125 ~~l~~-------~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~ 197 (330)
..+.. .|++
T Consensus 116 ~~i~~~i~~~~~~yl~---------------------------------------------------------------- 131 (361)
T 2qag_A 116 KTIISYIDEQFERYLH---------------------------------------------------------------- 131 (361)
T ss_dssp CCTHHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 22221 1110
Q ss_pred ccccccccccCccccCCCEEEEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCc
Q psy9997 198 AGQEDYDRLRPLSYPQTDVFLVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPI 276 (330)
Q Consensus 198 ~g~e~~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v 276 (330)
+ -.......+.++.+.+++|++++ ..++..+...|+..+ ..++|+|+|+||+|+... +.+
T Consensus 132 ---~-~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~------------~ev 192 (361)
T 2qag_A 132 ---D-ESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTL------------KER 192 (361)
T ss_dssp ---H-HTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCH------------HHH
T ss_pred ---H-hhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCH------------HHH
Confidence 0 01111124556667778888886 677777664455554 357999999999999764 333
Q ss_pred CH--HHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 277 SF--EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 277 ~~--~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.. +++.++++.++ ++++++||++|.+ ++.|..+...+.+.
T Consensus 193 ~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 193 ERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 33 56777777776 7999999999999 88888888877644
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.70 E-value=1.3e-17 Score=156.89 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=88.2
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
..+.+||++|++.|.......+..+|++++|+|+++..++.+.. .|+..+... ...|+++|+||+|+.....
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~-~~~~~~~~~-~~~~iivviNK~Dl~~~~~------ 146 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR-EHFVALGII-GVKNLIIVQNKVDVVSKEE------ 146 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHH-HHHHHHHHc-CCCCEEEEEECccccchHH------
Confidence 45678999999999888888899999999999999887777766 566555443 2369999999999975421
Q ss_pred hCCCCCcCHHHHHHHHHHhC--CeeEEEEeeccCCCHHHHHHHHHHHhcCCCCC
Q psy9997 270 KNKQKPISFEQGEKLAKELK--AVKYVECSALTQKGLKNVFDEAILAALEPPEP 321 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~~ 321 (330)
.....++..++.+..+ ..+++++||++|.|++++|+.+...+..+...
T Consensus 147 ----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~ 196 (403)
T 3sjy_A 147 ----ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRD 196 (403)
T ss_dssp ----HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCC
T ss_pred ----HHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCC
Confidence 0111223333333221 36899999999999999999999877655443
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.70 E-value=5.3e-18 Score=161.40 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=105.8
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
..+||+++|++|+|||||+++|.+..+ ...+..|..+.+...+.+++. .+.+|||+|.+.+....
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~v----------- 289 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQV----------- 289 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHH-----------
Confidence 358999999999999999999998653 444444444555556777764 46899999984322111
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccc-ccccCccccCCCEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDY-DRLRPLSYPQTDVFL 218 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~-~~~~~~~~~~~d~~i 218 (330)
+.+ -.....+++.+|+++
T Consensus 290 -------------------------------------------------------------e~~gi~~~~~~~~~aD~vl 308 (462)
T 3geh_A 290 -------------------------------------------------------------EKIGVERSRQAANTADLVL 308 (462)
T ss_dssp ----------------------------------------------------------------------CCCCSCSEEE
T ss_pred -------------------------------------------------------------HHHHHHHHhhhhhcCCEEE
Confidence 111 011234677899999
Q ss_pred EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEee
Q psy9997 219 VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA 298 (330)
Q Consensus 219 lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 298 (330)
+|+|.+++.++... .|+..+. +.|+++|+||+|+..... +. ....+. ...+++++||
T Consensus 309 ~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~~~------------~~--~~~~~~---~~~~~i~iSA 365 (462)
T 3geh_A 309 LTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEKQL------------IT--SLEYPE---NITQIVHTAA 365 (462)
T ss_dssp EEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCGGG------------ST--TCCCCT---TCCCEEEEBT
T ss_pred EEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcchh------------hH--HHHHhc---cCCcEEEEEC
Confidence 99999998777663 3655553 479999999999976421 11 111111 2368999999
Q ss_pred ccCCCHHHHHHHHHHHhcCCC
Q psy9997 299 LTQKGLKNVFDEAILAALEPP 319 (330)
Q Consensus 299 ~~~~~v~~~f~~l~~~i~~~~ 319 (330)
++|.|++++|+.+.+.+....
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999887654
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.69 E-value=1.1e-18 Score=168.29 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=75.6
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
+.+|||+|++.|...+..++..+|++++|+|+++....+... ++..+.. .++|+++|+||+|+.....
T Consensus 54 i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e--~l~~~~~--~~vPiIVViNKiDl~~~~~-------- 121 (537)
T 3izy_P 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE--SIQHAKD--AHVPIVLAINKCDKAEADP-------- 121 (537)
T ss_dssp CBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHH--HHHHHHT--TTCCEEECCBSGGGTTTSC--------
T ss_pred EEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHH--HHHHHHH--cCCcEEEEEecccccccch--------
Confidence 456666666888888888889999999999999866555544 2222222 4789999999999975421
Q ss_pred CCCCcCHHHHHHH---HHHh-CCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 272 KQKPISFEQGEKL---AKEL-KAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 272 ~~~~v~~~~~~~~---~~~~-~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
..+. ++...+ +..+ +.++++++||++|.|++++|+.+...+-
T Consensus 122 --~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 122 --EKVK-KELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp --CSSS-SHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred --HHHH-HHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 1111 111111 1112 2368999999999999999999988764
No 146
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.5e-18 Score=141.70 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=79.2
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCC---CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~ 137 (330)
...+||+++|++|||||||++++.+..+.. .+.++.+. +.....+.+|||+|+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~---------------- 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGH---------------- 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTC----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCC----------------
Confidence 456899999999999999999999987643 12222211 113345556666665
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccC----
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQ---- 213 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~---- 213 (330)
+.+...+..++..
T Consensus 102 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 102 ---------------------------------------------------------------VKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp ---------------------------------------------------------------CBSSCCHHHHHHHHGGG
T ss_pred ---------------------------------------------------------------chHHHHHHHHHHhhccc
Confidence 4444444444444
Q ss_pred CCEEEEEEEcC-ChhhHhhhhhcchhhhhhc-----CCCCcEEEEEeccCCCCC
Q psy9997 214 TDVFLVCFSVV-SPSSFENVKEKWVPEITHH-----CQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 214 ~d~~ilv~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilV~nK~Dl~~~ 261 (330)
+|++++|||++ ++.+|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCCchhHHHHH-HHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 999999988 677666543 258999999999999764
No 147
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.68 E-value=3.3e-17 Score=148.01 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=107.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCc-cccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-DYDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~l~~~~~~~~~~ 137 (330)
.+..+|+++|++|+|||||++++++.++. .....|........+ ......+.+|||||.. ....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~--~~~~~~i~~iDTpG~~~~~~~----------- 72 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH--TEGAYQAIYVDTPGLHMEEKR----------- 72 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE--EETTEEEEEESSSSCCHHHHH-----------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE--EECCeeEEEEECcCCCccchh-----------
Confidence 44568999999999999999999988752 122222211111112 2234567778888772 1000
Q ss_pred EEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEE
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVF 217 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ 217 (330)
... +.+......+++.+|++
T Consensus 73 -------------~l~-----------------------------------------------~~~~~~~~~~l~~~D~v 92 (301)
T 1ega_A 73 -------------AIN-----------------------------------------------RLMNKAASSSIGDVELV 92 (301)
T ss_dssp -------------HHH-----------------------------------------------HHHTCCTTSCCCCEEEE
T ss_pred -------------hHH-----------------------------------------------HHHHHHHHHHHhcCCEE
Confidence 000 13344556678899999
Q ss_pred EEEEEcCChhhHhhhhhcch-hhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWV-PEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~-~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|+|.++ +.... .|+ ..+.. .+.|+++|+||+|+... +....+.+..+++.++...++++
T Consensus 93 l~Vvd~~~---~~~~~-~~i~~~l~~--~~~P~ilvlNK~D~~~~------------~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 93 IFVVEGTR---WTPDD-EMVLNKLRE--GKAPVILAVNKVDNVQE------------KADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp EEEEETTC---CCHHH-HHHHHHHHS--SSSCEEEEEESTTTCCC------------HHHHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEEeCCC---CCHHH-HHHHHHHHh--cCCCEEEEEECcccCcc------------HHHHHHHHHHHHHhcCcCceEEE
Confidence 99999976 33333 233 22322 47899999999999752 12233455666666664479999
Q ss_pred eeccCCCHHHHHHHHHHHhcC
Q psy9997 297 SALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
||++|.|++++++.+...+-+
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCB
T ss_pred ECCCCCCHHHHHHHHHHhCCc
Confidence 999999999999999877643
No 148
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.68 E-value=2.4e-17 Score=145.74 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=106.3
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCC-CCCCCCCc-e-eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPT-V-FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~~~t-~-~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
....+||+++|++|+|||||++++++.. +...+.++ + .......+..++ ..+.+|||||...+......+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~----- 91 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEAL----- 91 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHH-----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHH-----
Confidence 3457899999999999999999999877 55555554 2 222233444444 468889999983221100000
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
.+........+++.+|+
T Consensus 92 ---------------------------------------------------------------~~~i~~~~~~~~~~~d~ 108 (260)
T 2xtp_A 92 ---------------------------------------------------------------YKEVQRCYLLSAPGPHV 108 (260)
T ss_dssp ---------------------------------------------------------------HHHHHHHHHHHTTCCSE
T ss_pred ---------------------------------------------------------------HHHHHHHHHhcCCCCcE
Confidence 00111122235678999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEe-ccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGT-QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~n-K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
+++|+|+++ +......++..+.+.. ...|.++|+| |+|+.... ....+. ....++++.+++..+...
T Consensus 109 il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~-----~~~~~~~~~~~~~~~~~~ 179 (260)
T 2xtp_A 109 LLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMH-----DSDNKALSKLVAACGGRI 179 (260)
T ss_dssp EEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHH-----HCCCHHHHHHHHHTTTCE
T ss_pred EEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHH-----hcchHHHHHHHHHhCCeE
Confidence 999999986 2222212223333322 1346666555 99997431 000000 011144556777665311
Q ss_pred --E--EEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 293 --Y--VECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 293 --~--~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+ +++||++|.|++++|+.+...+.+.
T Consensus 180 ~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 180 CAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 3 7899999999999999998887653
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.67 E-value=2.9e-17 Score=157.54 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=78.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+.+||++|++.|.......+..+|++++|+|+++ +++++.+. ++ .. .++|+++|+||+|+..+..
T Consensus 75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~--~~---~~--~~ip~IvviNK~Dl~~~~~----- 142 (482)
T 1wb1_A 75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML--IL---DH--FNIPIIVVITKSDNAGTEE----- 142 (482)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH--HH---HH--TTCCBCEEEECTTSSCHHH-----
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH--HH---HH--cCCCEEEEEECCCcccchh-----
Confidence 3456666667777777777889999999999987 66666554 22 22 3688999999999975311
Q ss_pred hhCCCCCcCHHHHHHHHHHh---CCeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 269 AKNKQKPISFEQGEKLAKEL---KAVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.....+++.++++.. ...+++++||++|.|++++++.+...+-
T Consensus 143 -----~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 143 -----IKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp -----HHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 112334566666554 1368999999999999999999988764
No 150
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=143.94 Aligned_cols=179 Identities=15% Similarity=0.049 Sum_probs=106.8
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce--eecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--FDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~--~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
....+||+++|++|+|||||++++++..+.....++. .... ...+..++ ..+.+|||||.......
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~--------- 94 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVP--------- 94 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC--------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCC---------
Confidence 4567999999999999999999999988765554422 2222 22444554 46789999997210000
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCE
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDV 216 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~ 216 (330)
.. .-++.+......+++.+|+
T Consensus 95 -----------~~------------------------------------------------~~~~~~~~~~~~~~~~~~~ 115 (239)
T 3lxx_A 95 -----------NA------------------------------------------------ETSKEIIRCILLTSPGPHA 115 (239)
T ss_dssp -----------CH------------------------------------------------HHHHHHHHHHHHTTTCCSE
T ss_pred -----------HH------------------------------------------------HHHHHHHHHHHhcCCCCcE
Confidence 00 0002333334445678999
Q ss_pred EEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeE
Q psy9997 217 FLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKY 293 (330)
Q Consensus 217 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 293 (330)
+++|+|+++.... .. .|+..+.... ...|+++|+||+|+........- -....+.++.+++..+ ..|
T Consensus 116 ~l~v~d~~~~~~~-~~--~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~------i~~~~~~l~~l~~~~~-~~~ 185 (239)
T 3lxx_A 116 LLLVVPLGRYTEE-EH--KATEKILKMFGERARSFMILIFTRKDDLGDTNLHDY------LREAPEDIQDLMDIFG-DRY 185 (239)
T ss_dssp EEEEEETTCCSSH-HH--HHHHHHHHHHHHHHGGGEEEEEECGGGC------------------CHHHHHHHHHHS-SSE
T ss_pred EEEEeeCCCCCHH-HH--HHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHH------HHhchHHHHHHHHHcC-CEE
Confidence 9999999754332 11 3444443322 24699999999999754110000 0011246788888887 478
Q ss_pred EEEeeccC-----CCHHHHHHHHHHHhcCC
Q psy9997 294 VECSALTQ-----KGLKNVFDEAILAALEP 318 (330)
Q Consensus 294 ~e~Sa~~~-----~~v~~~f~~l~~~i~~~ 318 (330)
+.++++.+ .++.++|..+...+.+.
T Consensus 186 ~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 186 CALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 77776643 78999999888777553
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.67 E-value=3.1e-17 Score=157.68 Aligned_cols=101 Identities=12% Similarity=0.188 Sum_probs=61.1
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhh----hcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK----EKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~----~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
+|||+|++.|...+..+++.+|++++|+|+++..++..+. ..++..+.......|+|+|+||+|+...
T Consensus 115 iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~-------- 186 (483)
T 3p26_A 115 IVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-------- 186 (483)
T ss_dssp EECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT--------
T ss_pred EEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc--------
Confidence 3344444777677777788999999999999876654431 0111112222234579999999999763
Q ss_pred hCCCCCcCH----HHHHHHHHHhC----CeeEEEEeeccCCCHHH
Q psy9997 270 KNKQKPISF----EQGEKLAKELK----AVKYVECSALTQKGLKN 306 (330)
Q Consensus 270 ~~~~~~v~~----~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~ 306 (330)
++... +++..+....+ .++++++||++|.|+++
T Consensus 187 ----~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 ----SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ----hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22222 33444444443 26899999999999975
No 152
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.67 E-value=4.6e-17 Score=151.50 Aligned_cols=124 Identities=12% Similarity=0.152 Sum_probs=86.0
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCC----------hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCCC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~~ 260 (330)
.+||++||++++.++..+|++++++|+|||+++ ..+|+++. .|+..+... ..++|++|||||+|+..
T Consensus 220 ~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 220 HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp EEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred eecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence 344444447777777778888888888888887 89999998 888888764 46899999999999954
Q ss_pred Cchh-----hHHhhhCCC------------CC-cCHHHHHHHHHH-----h-------CCeeEEEEeeccCCCHHHHHHH
Q psy9997 261 DAPT-----LEKLAKNKQ------------KP-ISFEQGEKLAKE-----L-------KAVKYVECSALTQKGLKNVFDE 310 (330)
Q Consensus 261 ~~~~-----~~~~~~~~~------------~~-v~~~~~~~~~~~-----~-------~~~~~~e~Sa~~~~~v~~~f~~ 310 (330)
+... ....-++.. .. .+.+++..|+.. . ..+.+++|||+++.||+++|..
T Consensus 299 ~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~ 378 (402)
T 1azs_C 299 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378 (402)
T ss_dssp HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHH
T ss_pred hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHH
Confidence 3110 000000000 00 125677777422 1 2367899999999999999999
Q ss_pred HHHHhcC
Q psy9997 311 AILAALE 317 (330)
Q Consensus 311 l~~~i~~ 317 (330)
+...+++
T Consensus 379 v~~~I~~ 385 (402)
T 1azs_C 379 CRDIIQR 385 (402)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.67 E-value=3.8e-16 Score=152.73 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=77.0
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|......+++.+|++++|+|+++..+++... .|..... .++|+++|+||+|+... + ..+.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~-~~~~~~~---~~ipiIvViNKiDl~~a------------~--~~~v 143 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLA-NCYTAME---MDLEVVPVLNKIDLPAA------------D--PERV 143 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHH-HHHHHHH---TTCEEEEEEECTTSTTC------------C--HHHH
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-HHHHHHH---CCCCEEEeeeccCcccc------------c--HHHH
Confidence 445555556678899999999999988887776 5655443 37899999999999754 1 2233
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
..++.+.++. ..++++||++|.|++++|+.+++.+-.+..
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 4556666652 148999999999999999999998876543
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.66 E-value=1.2e-17 Score=148.85 Aligned_cols=185 Identities=17% Similarity=0.175 Sum_probs=93.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCC-CCCCC-------CCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNK-FPSEY-------VPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 132 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~-~~~~~-------~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~ 132 (330)
..++|+++|.+|+|||||++++++.. +...+ .+|++..+. ..+..++..+.+.+|||||..........
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~-- 84 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC-- 84 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT--
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh--
Confidence 46899999999999999999966544 55555 566654443 35556677789999999998322110000
Q ss_pred CCCceEEEEeccccchhhhccccc-ccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-Ccc
Q psy9997 133 PQTDVFLVCFGNMMNIRRSVDWNR-KLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLS 210 (330)
Q Consensus 133 ~~~~~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~ 210 (330)
.....+.-. ....++ .+.....+ ...
T Consensus 85 ---------------~~~i~~~i~~~~~~~l-------------------------------------~~~~~~~r~~~~ 112 (274)
T 3t5d_A 85 ---------------WQPVIDYIDSKFEDYL-------------------------------------NAESRVNRRQMP 112 (274)
T ss_dssp ---------------THHHHHHHHHHHHHHH-------------------------------------HHHHSSCCCSCC
T ss_pred ---------------HHHHHHHHHHHHHHHH-------------------------------------Hhhccccccccc
Confidence 000000000 000000 00000001 112
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCC
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 290 (330)
-..+|+++++.+.+... +......++..+.. ++|+++|+||+|+..... .....+.+.+.....+
T Consensus 113 d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e----------~~~~~~~i~~~l~~~~- 177 (274)
T 3t5d_A 113 DNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEE----------CQQFKKQIMKEIQEHK- 177 (274)
T ss_dssp CCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHH----------HHHHHHHHHHHHHHTT-
T ss_pred CCceeEEEEEecCCCCC-CCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHH----------HHHHHHHHHHHHHHcC-
Confidence 23477888888766532 22222245555554 799999999999965311 1112234455555666
Q ss_pred eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 291 VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 291 ~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
++++++||+++.|++++++.+...+
T Consensus 178 i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 178 IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp CCCCCC-----------CHHHHHTC
T ss_pred CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 7899999999999999999988764
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.66 E-value=1.2e-16 Score=150.65 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=80.5
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCC----hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhH
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~ 266 (330)
.+.+||++|++.|.......+..+|++++|+|+++ +++++.+. .| . .. ...|+++|+||+|+.....
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~-~---~~-~~~~iivviNK~Dl~~~~~--- 154 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-AL-Q---II-GQKNIIIAQNKIELVDKEK--- 154 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HH-H---HH-TCCCEEEEEECGGGSCHHH---
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HH-H---Hc-CCCcEEEEEECccCCCHHH---
Confidence 45677777778887766667788999999999984 45665554 22 1 11 2468999999999976421
Q ss_pred HhhhCCCCCcCHHHHHHHHHHh--CCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 267 KLAKNKQKPISFEQGEKLAKEL--KAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.....+++.++++.. ...+++++||++|.|++++++.+...+..+..
T Consensus 155 -------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~ 203 (410)
T 1kk1_A 155 -------ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKR 203 (410)
T ss_dssp -------HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred -------HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcc
Confidence 112334555555542 23689999999999999999999987765543
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.64 E-value=2.1e-16 Score=146.21 Aligned_cols=171 Identities=20% Similarity=0.154 Sum_probs=109.8
Q ss_pred eEe-EEEeecCCCceeEEEEeeccCCCCC-CCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 63 TIK-CVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 63 ~~k-i~vvG~~~~GKTsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
.++ ++++|++|+|||||++++.+..+.. .+..+.-+.....+.+++ ..+.+|||+|.-.. +...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~--lp~~---------- 243 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRG--IPPQ---------- 243 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSS--CCGG----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhc--CCHH----------
Confidence 355 8999999999999999999877532 222233334455677777 45689999997110 0000
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVC 220 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv 220 (330)
-.+.+..... .+..+|++++|
T Consensus 244 ----------------------------------------------------------lve~f~~tl~-~~~~aD~il~V 264 (364)
T 2qtf_A 244 ----------------------------------------------------------IVDAFFVTLS-EAKYSDALILV 264 (364)
T ss_dssp ----------------------------------------------------------GHHHHHHHHH-GGGGSSEEEEE
T ss_pred ----------------------------------------------------------HHHHHHHHHH-HHHhCCEEEEE
Confidence 0022332222 46789999999
Q ss_pred EEcCChh--hHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh-C-CeeEEE
Q psy9997 221 FSVVSPS--SFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL-K-AVKYVE 295 (330)
Q Consensus 221 ~d~~~~~--s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~e 295 (330)
+|++++. +++.+. .|...+.... .+.|+++|+||+|+..... ....+.+..+++.+ . ..++++
T Consensus 265 vD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 265 IDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGDL-----------YKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp EETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSCH-----------HHHHHHHHHHHHHHCSCEEEEEE
T ss_pred EECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCchH-----------HHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999887 566554 5555555443 5789999999999975310 00122344455655 2 247899
Q ss_pred EeeccCCCHHHHHHHHHHHhcCC
Q psy9997 296 CSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 296 ~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
+||++|.|++++++.+...+..+
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHhccc
Confidence 99999999999999998877544
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.64 E-value=6.7e-16 Score=150.72 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=76.3
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
+.|......+++.+|++++|+|+++..+++... .|..... .++|+++|+||+|+... + ..+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~-~~~~a~~---~~ipiIvviNKiDl~~a------------~--~~~v 145 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVA-NFWKAVE---QDLVIIPVINKIDLPSA------------D--VDRV 145 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHH-HHHHHHH---TTCEEEEEEECTTSTTC------------C--HHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---CCCCEEEEEeccCcccc------------C--HHHH
Confidence 445444555678899999999999988888776 6655443 37899999999999754 1 1233
Q ss_pred HHHHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 281 GEKLAKELKA--VKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 281 ~~~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
..++.+.++. ..++++||++|.|++++|+.+++.+-.+..
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~ 187 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG 187 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence 4556565552 248999999999999999999998876543
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.64 E-value=3.8e-17 Score=155.02 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=79.3
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-----CC-CcEEEEEeccCCCCCchhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QK-TPFLLVGTQIDLREDAPTL 265 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~-~piilV~nK~Dl~~~~~~~ 265 (330)
+.+|||+|++.|...+..++..+|++++|+|+++ .+|+++. .|..+..++. .+ .|+++|+||+|+.......
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~-~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGM-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHH-STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Ccccccc-ccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 4566666668887777778899999999999998 7888876 6766665543 24 4699999999997631000
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKNVFD 309 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~~f~ 309 (330)
+. .....++++++++.++ .++++++||++|.|+.++++
T Consensus 164 ~~------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 164 KR------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HH------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HH------HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 00 0223466777887766 26799999999999986554
No 159
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.63 E-value=1.8e-16 Score=155.13 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=77.0
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchh----
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPT---- 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~---- 264 (330)
+.+|||+|++.|...+..+++.+|++++|+|+++ +++++.+. ++ .. .++|+++|+||+|+......
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~--~l---~~--~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN--IL---RM--YRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH--HH---HH--TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH--HH---HH--cCCeEEEEecccccccccccccCC
Confidence 4577777778888888888999999999999999 88887765 22 22 47899999999999643110
Q ss_pred --hHHhhhCCC--CCcCHH---HH-HHHHHH-------------hCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 265 --LEKLAKNKQ--KPISFE---QG-EKLAKE-------------LKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 265 --~~~~~~~~~--~~v~~~---~~-~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+....... +....+ +. ..+.+. .+.++++++||++|.|++++++.+...+
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 000000000 000000 11 111111 1225899999999999999999998765
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=3.3e-17 Score=156.43 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=98.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
|...+|+++|.+|||||||+++|.+.++.. ..++.|.... ....+......+.+|||+|....
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~--------------- 84 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIG--------------- 84 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC-------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCc---------------
Confidence 566799999999999999999999877531 1222333322 12333444556778888875100
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCccccCCCEEEE
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLV 219 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~~~~~d~~il 219 (330)
+...++.+......+++.+|++++
T Consensus 85 --------------------------------------------------------~~~~~~~~~~~~~~~~~~ad~il~ 108 (456)
T 4dcu_A 85 --------------------------------------------------------DEPFLAQIRQQAEIAMDEADVIIF 108 (456)
T ss_dssp ----------------------------------------------------------CCHHHHHHHHHHHHHHCSEEEE
T ss_pred --------------------------------------------------------chHHHHHHHHHHHhhHhhCCEEEE
Confidence 000136677777778899999999
Q ss_pred EEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeec
Q psy9997 220 CFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL 299 (330)
Q Consensus 220 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 299 (330)
|+|..+..+..+. .+...+.+ .+.|+++|+||+|+.... ++...+. ..+...++++||+
T Consensus 109 VvD~~~~~~~~d~--~l~~~l~~--~~~pvilV~NK~D~~~~~----------------~~~~e~~-~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 109 MVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMR----------------ANIYDFY-SLGFGEPYPISGT 167 (456)
T ss_dssp EEESSSCSCHHHH--HHHHHHTT--CCSCEEEEEECC-------------------------CCSG-GGSSSSEEECCTT
T ss_pred EEeCCCCCChHHH--HHHHHHHH--cCCCEEEEEECccchhhh----------------hhHHHHH-HcCCCceEEeecc
Confidence 9998764443332 23333433 589999999999986431 0111111 1232356899999
Q ss_pred cCCCHHHHHHHHHHHhcC
Q psy9997 300 TQKGLKNVFDEAILAALE 317 (330)
Q Consensus 300 ~~~~v~~~f~~l~~~i~~ 317 (330)
+|.|++++|+.+...+-+
T Consensus 168 ~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TCTTHHHHHHHHHTTGGG
T ss_pred cccchHHHHHHHHhhccc
Confidence 999999999999887753
No 161
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.63 E-value=9.8e-17 Score=148.05 Aligned_cols=125 Identities=13% Similarity=0.140 Sum_probs=85.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC----------hhhHhhhhhcchhhhhhc--CCCCcEEEEEeccCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CQKTPFLLVGTQIDLR 259 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilV~nK~Dl~ 259 (330)
+.+||++||++++..+..++++++++|+|||+++ ..+|++.. .|+..+... ..++|+|||+||+|+.
T Consensus 203 l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~-~~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 203 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred EEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHH-HHHHHHhcchhhCCCCEEEEEEChhhh
Confidence 3445555557777788888888888888898888 78899888 677776653 4789999999999996
Q ss_pred CCchh---hHHhhhCCCCC-cCHHHHHHHHHH----------hCCeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 260 EDAPT---LEKLAKNKQKP-ISFEQGEKLAKE----------LKAVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 260 ~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
.+... ....-++.... ++.+++..|+.. ...+.++++||+++.||+++|..+.+.+++
T Consensus 282 ~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 282 EEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 43110 11111222233 778899888721 123679999999999999999999988864
No 162
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=3.6e-16 Score=133.19 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=101.0
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEE
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 140 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~ 140 (330)
...+++++|++|+|||||++++.+..+...+.|+.|..+. ..+.+++ .+.+|||+|...... ..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~-~~----------- 89 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEV-PE----------- 89 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCccccc-CH-----------
Confidence 4578999999999999999999988766666677665543 2334433 577899999721000 00
Q ss_pred EeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCcc---ccCCCEE
Q psy9997 141 CFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPLS---YPQTDVF 217 (330)
Q Consensus 141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~~---~~~~d~~ 217 (330)
. ..+.+......+ ...++++
T Consensus 90 --------~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 112 (210)
T 1pui_A 90 --------E-------------------------------------------------MKRKWQRALGEYLEKRQSLQGL 112 (210)
T ss_dssp --------C-------------------------------------------------CHHHHHHHHHHHHHHCTTEEEE
T ss_pred --------H-------------------------------------------------HHHHHHHHHHHHHHhhhcccEE
Confidence 0 001111111112 2467899
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhC-CeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK-AVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~ 296 (330)
++++|++++.++.... ....+.. .+.|+++|+||+|+..... ++...+.+++++...+ .+.++++
T Consensus 113 ~~v~d~~~~~~~~~~~--~~~~~~~--~~~~~~~v~nK~D~~s~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 113 VVLMDIRHPLKDLDQQ--MIEWAVD--SNIAVLVLLTKADKLASGA----------RKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp EEEEETTSCCCHHHHH--HHHHHHH--TTCCEEEEEECGGGSCHHH----------HHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred EEEEECCCCCchhHHH--HHHHHHH--cCCCeEEEEecccCCCchh----------HHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999876654321 1111221 4789999999999865311 2223456666666554 3678999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||+++.|++++++.+.+.+-+.
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC--
T ss_pred eecCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999988876543
No 163
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=2.2e-16 Score=142.61 Aligned_cols=86 Identities=8% Similarity=-0.032 Sum_probs=52.3
Q ss_pred EEEEEcCC-hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVS-PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
+++|.... ..+++.+.. ..+.+...+.|+++|+||.|+....+ ..+..++++++++.++ ++|+++
T Consensus 129 ~ll~ldePt~~~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e----------~~~~~~~~~~~~~~~~-~~~~e~ 194 (301)
T 2qnr_A 129 CCFYFISPFGHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE----------RERLKKRILDEIEEHN-IKIYHL 194 (301)
T ss_dssp EEEEEECSSSSSCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH----------HHHHHHHHHHHHHHTT-CCCCCC
T ss_pred heeeeecCcccCCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH----------HHHHHHHHHHHHHHcC-CeEEec
Confidence 34444442 235666542 23333345789999999999975311 2234578889999998 799999
Q ss_pred eeccCCCHHHHHHHHHHHhcCC
Q psy9997 297 SALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 297 Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
||++| |++++|..+.+.+.+.
T Consensus 195 Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 195 PDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp C----------CHHHHHHHHTT
T ss_pred CCccc-cccHHHHHHHHHhhcC
Confidence 99999 9999999999988654
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.61 E-value=2.2e-16 Score=148.52 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=77.4
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhC
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKN 271 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~ 271 (330)
.+|||+|++.|...+..++..+|++++|+|+++....+.. .|+..+.. .++| +++|+||+|+.......
T Consensus 78 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~--~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~------ 147 (405)
T 2c78_A 78 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQ--VGVPYIVVFMNKVDMVDDPELL------ 147 (405)
T ss_dssp EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHH--TTCCCEEEEEECGGGCCCHHHH------
T ss_pred EEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHH--cCCCEEEEEEECccccCcHHHH------
Confidence 4455555577766666778899999999999886544433 35555444 3678 89999999997421100
Q ss_pred CCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCC------------------HHHHHHHHHHHhcCC
Q psy9997 272 KQKPISFEQGEKLAKELKA----VKYVECSALTQKG------------------LKNVFDEAILAALEP 318 (330)
Q Consensus 272 ~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~------------------v~~~f~~l~~~i~~~ 318 (330)
....+++.++++.++. .+++++||++|.| ++++++.+...+-.+
T Consensus 148 ---~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 148 ---DLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp ---HHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ---HHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 1123456677777652 6899999999987 778888777665433
No 165
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.61 E-value=6.4e-16 Score=146.63 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=71.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhh---Hhhhhhcchhhhhh-cCCCCc-EEEEEeccCCCCCchhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FENVKEKWVPEITH-HCQKTP-FLLVGTQIDLREDAPTL 265 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~~~~~~~~~~i~~-~~~~~p-iilV~nK~Dl~~~~~~~ 265 (330)
.+.+|||+|++.|...+...+..+|++++|+|+++... |+... ++...+.. ...++| +|+|+||+|+.......
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~-qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGG-QTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCc-hHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 34567777778888777888889999999999987532 22111 11111111 113566 99999999996431100
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHhC-----CeeEEEEeeccCCCHHHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKELK-----AVKYVECSALTQKGLKNVFD 309 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~~f~ 309 (330)
.. .....++...+++..+ .++++++||++|.|++++++
T Consensus 175 ~~------~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 175 ER------YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HH------HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 00 1123345566666655 25799999999999999655
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.60 E-value=1.4e-16 Score=143.48 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=63.0
Q ss_pred cccccCccccCCCEEE-EEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH
Q psy9997 203 YDRLRPLSYPQTDVFL-VCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG 281 (330)
Q Consensus 203 ~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 281 (330)
+......+++.+++++ +|+|.++..+..+.. .|+..+.. .+.|+++|+||+|+... +....+.+
T Consensus 151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~i~V~NK~Dl~~~------------~~~~~~~~ 215 (299)
T 2aka_B 151 IRDMLMQFVTKENCLILAVSPANSDLANSDAL-KIAKEVDP--QGQRTIGVITKLDLMDE------------GTDARDVL 215 (299)
T ss_dssp HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH-HHHHHHCT--TCSSEEEEEECGGGSCT------------TCCCHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEecCCcchhhhHHH-HHHHHhCC--CCCeEEEEEEccccCCC------------CchHHHHH
Confidence 4445556777888776 689998765554433 35555443 47899999999999764 21122222
Q ss_pred HHH--HHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 282 EKL--AKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 282 ~~~--~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
+.. ....+..+++++||++|.|++++|+.+...
T Consensus 216 ~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 216 ENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp TTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred hCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 110 001122468999999999999999988763
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.60 E-value=7.3e-16 Score=144.51 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=79.6
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+||++|++.|......+++.+|++++|+|+++....+... .| ..+.. .++| +++|+||+|+......
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l-~~~~~--~~vp~iivviNK~Dl~~~~~~------ 137 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTRE-HL-LLARQ--IGVEHVVVYVNKADAVQDSEM------ 137 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH-HH-HHHHH--TTCCCEEEEEECGGGCSCHHH------
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHH-HH-HHHHH--cCCCeEEEEEECcccCCCHHH------
Confidence 446666666777777777888999999999999854444333 22 33333 3678 7899999999752110
Q ss_pred CCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCC----------HHHHHHHHHHHhcCCC
Q psy9997 271 NKQKPISFEQGEKLAKELKA----VKYVECSALTQKG----------LKNVFDEAILAALEPP 319 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~----------v~~~f~~l~~~i~~~~ 319 (330)
.....++++++++.++. .+++++||++|.| ++++++.+...+-.+.
T Consensus 138 ---~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 138 ---VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp ---HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred ---HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 01223567778777762 5899999999875 8999999888765443
No 168
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.60 E-value=5.6e-16 Score=149.79 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=47.4
Q ss_pred ccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 194 ~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+|||+|++.|......+++.+|++++|+|+++..+.+... .| ..+.. .++|+++|+||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~-~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 86 LLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LM-EVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp EECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HH-HHHHT--TTCCEEEEEECTTSCCS
T ss_pred EEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HH-HHHHH--cCCCEEEEEeCCCCccc
Confidence 3444444666666667788999999999999887777765 34 33333 37899999999999754
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.59 E-value=1e-16 Score=153.29 Aligned_cols=108 Identities=19% Similarity=0.385 Sum_probs=72.1
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCC---hhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKL 268 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~ 268 (330)
+.+|||+|++.|...+...+..+|++++|+|+++ +++.+.+. .+. ..++|+++|+||+|+....... .
T Consensus 53 i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~-----~~~--~~~vPiIVviNKiDl~~~~~~~--v 123 (501)
T 1zo1_I 53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ-----HAK--AAQVPVVVAVNKIDKPEADPDR--V 123 (501)
T ss_dssp CCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH-----HHH--HTTCCEEEEEECSSSSTTCCCC--T
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH-----HHH--hcCceEEEEEEeccccccCHHH--H
Confidence 4677777778888888888999999999999987 34443332 122 2478999999999997532110 0
Q ss_pred hhCCCCCcCHHHHHHHHHHhC-CeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 269 AKNKQKPISFEQGEKLAKELK-AVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 269 ~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
.... ... ..+++.++ .++++++||++|.|++++|+.++..
T Consensus 124 ~~~l-~~~-----~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 124 KNEL-SQY-----GILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TCCC-CCC-----CCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHH-HHh-----hhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 0000 000 00111222 3689999999999999999998764
No 170
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.58 E-value=4.6e-17 Score=140.55 Aligned_cols=173 Identities=19% Similarity=0.149 Sum_probs=103.9
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-------------EEEEEC-CceeeeeeeecCCCcccccc
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-------------VTVMIG-GEPYTLGLFDTAGQEDYDRL 127 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~~~l~i~Dt~g~~~~~~l 127 (330)
...+|+++|++|||||||+++|....+...+.++++..+. ..+.++ +..+.+..||+ ++.++.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHHH
Confidence 3579999999999999999999988776666677765543 333343 44455566665 3343333
Q ss_pred CCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc
Q psy9997 128 RPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR 207 (330)
Q Consensus 128 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~ 207 (330)
. +.+.+.+++ |++|.-.-.
T Consensus 115 ~---~~~~d~~~i-------------------------------------------------------d~~g~i~~~--- 133 (226)
T 2hf9_A 115 N---LDEIDLLFI-------------------------------------------------------ENVGNLICP--- 133 (226)
T ss_dssp C---GGGCSEEEE-------------------------------------------------------ECCSCSSGG---
T ss_pred h---cCCCCEEEE-------------------------------------------------------eCCCCccCc---
Confidence 2 112222222 222210000
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
..+-...+.++.+.|...... ....+... ...|.++|+||+|+... +.+..+++.++++.
T Consensus 134 ~s~~~~~~~~~~v~~~~~~~~---~~~~~~~~-----~~~~~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~ 193 (226)
T 2hf9_A 134 ADFDLGTHKRIVVISTTEGDD---TIEKHPGI-----MKTADLIVINKIDLADA------------VGADIKKMENDAKR 193 (226)
T ss_dssp GGCCCSCSEEEEEEEGGGCTT---TTTTCHHH-----HTTCSEEEEECGGGHHH------------HTCCHHHHHHHHHH
T ss_pred chhhhccCcEEEEEecCcchh---hHhhhhhH-----hhcCCEEEEeccccCch------------hHHHHHHHHHHHHH
Confidence 001112234556666432111 11011111 14688999999999643 33567777777776
Q ss_pred hC-CeeEEEEeeccCCCHHHHHHHHHHHhcC
Q psy9997 288 LK-AVKYVECSALTQKGLKNVFDEAILAALE 317 (330)
Q Consensus 288 ~~-~~~~~e~Sa~~~~~v~~~f~~l~~~i~~ 317 (330)
++ ..+++++||++|.|++++|+.+.+.+.+
T Consensus 194 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 194 INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 53 3689999999999999999999887643
No 171
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.58 E-value=3.5e-16 Score=137.31 Aligned_cols=178 Identities=11% Similarity=0.029 Sum_probs=103.0
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc-e--EEEEECCceeeeeeeecCCCccccccCCCCCCCC
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-A--VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 135 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~-~--~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~ 135 (330)
+....+||+++|.+|+|||||++++++..+.....++.+... . .....+ ...+.+|||||........
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~------- 87 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSK------- 87 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHH-------
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCc-------
Confidence 446789999999999999999999999886544333322221 1 233333 4567899999972111000
Q ss_pred ceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccC---cccc
Q psy9997 136 DVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRP---LSYP 212 (330)
Q Consensus 136 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~---~~~~ 212 (330)
|++....+.. ...+
T Consensus 88 ---------------------------------------------------------------~~~~~~~i~~~~~~~~~ 104 (247)
T 3lxw_A 88 ---------------------------------------------------------------TDPGCEERGHCYLLSAP 104 (247)
T ss_dssp ---------------------------------------------------------------HSTTSHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHhcCC
Confidence 0011111111 1237
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcC----CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHh
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHC----QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKEL 288 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 288 (330)
.+|++++|+|+++.. .....++..+...+ .+.|+++|+||.|+..... .+.+ +....++.+.+.+..
T Consensus 105 ~~d~il~V~d~~~~~---~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~l-----~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 105 GPHALLLVTQLGRFT---AQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSL-HDYV-----SNTENRALRELVAEC 175 (247)
T ss_dssp CCSEEEEEEETTBCC---HHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH-HHHH-----HHCCCHHHHHHHHHT
T ss_pred CCCEEEEEEeCCCCC---HHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCH-HHHH-----hhcccHHHHHHHHHc
Confidence 899999999998522 21112333333322 3689999999999965311 0000 011124567788887
Q ss_pred CCeeEEEEeecc-----CCCHHHHHHHHHHHhcCC
Q psy9997 289 KAVKYVECSALT-----QKGLKNVFDEAILAALEP 318 (330)
Q Consensus 289 ~~~~~~e~Sa~~-----~~~v~~~f~~l~~~i~~~ 318 (330)
+ ..|+.++++. +.|++++++.+...+-+.
T Consensus 176 g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 G-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp T-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7 4666666544 589999999998887654
No 172
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.57 E-value=1.2e-15 Score=144.63 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=72.9
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|++.|...+..++..+|++++|+|+++....+.. .++..+... ...|+++|+||+|+.......
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~----- 176 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL-GIKHIVVAINKMDLNGFDERV----- 176 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCEEEEEEECTTTTTSCHHH-----
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc-CCCeEEEEEEcCcCCcccHHH-----
Confidence 356778888888877777788999999999999986433322 233333332 234699999999997531100
Q ss_pred CCCCCcCHHHHHHHHHHhC----CeeEEEEeeccCCCHHHH
Q psy9997 271 NKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKNV 307 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~~ 307 (330)
.....+++..+++.++ ..+++++||++|.|++++
T Consensus 177 ---~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 ---FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ---HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred ---HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 0112356677777765 268999999999999984
No 173
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-15 Score=150.06 Aligned_cols=108 Identities=10% Similarity=0.167 Sum_probs=69.1
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChh---hHhhhhhcchhh--hhhcCCCCcEEEEEeccCCCCCchhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS---SFENVKEKWVPE--ITHHCQKTPFLLVGTQIDLREDAPTL 265 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~--i~~~~~~~piilV~nK~Dl~~~~~~~ 265 (330)
.+.+|||+|++.|...+..+++.+|++++|+|+++.. +|.... ++... +.......|+|+|+||+|+.......
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~-qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG-QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTS-HHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhh-HHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 4567777777888888888899999999999998743 111111 11111 11111234699999999997631100
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLKNV 307 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~ 307 (330)
.....+++..++...+. ++++++||++|.|++++
T Consensus 325 --------~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 --------FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp --------HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred --------HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 01113445555555542 58999999999999876
No 174
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.56 E-value=9.6e-16 Score=146.53 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=67.9
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCCh---hhHhhhhhcchhhhhhc-CCCCc-EEEEEeccCCCCCchhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP---SSFENVKEKWVPEITHH-CQKTP-FLLVGTQIDLREDAPTL 265 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~-~~~~p-iilV~nK~Dl~~~~~~~ 265 (330)
.+.+||++|++.|...+...+..+|++++|+|+++. .+|+... +|...+... ..++| +|+|+||+|+.......
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~-qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGG-QTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTC-CHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCC-cHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 456788888899888888889999999999999986 5666554 444433322 24677 99999999996421000
Q ss_pred HHhhhCCCCCcCHHHHHHHHHHh-C-----CeeEEEEeeccCCCHHHHH
Q psy9997 266 EKLAKNKQKPISFEQGEKLAKEL-K-----AVKYVECSALTQKGLKNVF 308 (330)
Q Consensus 266 ~~~~~~~~~~v~~~~~~~~~~~~-~-----~~~~~e~Sa~~~~~v~~~f 308 (330)
+. .....+++..+++.. + .++++++||++|.|++++|
T Consensus 201 ~~------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ER------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HH------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HH------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 00 012334566777665 3 2679999999999998765
No 175
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.56 E-value=8.3e-16 Score=142.53 Aligned_cols=99 Identities=5% Similarity=-0.028 Sum_probs=65.1
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcE-EEEEe-ccCCCCCchhhHHhhhCCCCCcCH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLVGT-QIDLREDAPTLEKLAKNKQKPISF 278 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilV~n-K~Dl~~~~~~~~~~~~~~~~~v~~ 278 (330)
+.|.......++.+|++++|+| + ...+.... .++..+.. .++|. ++|+| |+|+ .. ...+ ...
T Consensus 71 ~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~-e~~~~~~~--~~i~~~ivvvNNK~Dl-~~-~~~~---------~~~ 134 (370)
T 2elf_A 71 PKTLKSLITALNISDIAVLCIP-P-QGLDAHTG-ECIIALDL--LGFKHGIIALTRSDST-HM-HAID---------ELK 134 (370)
T ss_dssp TTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHH-HHHHHHHH--TTCCEEEEEECCGGGS-CH-HHHH---------HHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHH-HHHHHHHH--cCCCeEEEEEEeccCC-CH-HHHH---------HHH
Confidence 5554444455678999999999 4 33344444 34444433 25777 89999 9999 43 1000 012
Q ss_pred HHHHHHHHHhC--CeeEEE--Eeecc---CCCHHHHHHHHHHHh
Q psy9997 279 EQGEKLAKELK--AVKYVE--CSALT---QKGLKNVFDEAILAA 315 (330)
Q Consensus 279 ~~~~~~~~~~~--~~~~~e--~Sa~~---~~~v~~~f~~l~~~i 315 (330)
++++++++..+ .+++++ +||++ |.|++++++.+...+
T Consensus 135 ~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 135 AKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp HHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 45555655443 368999 99999 999999999988765
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=1.8e-15 Score=154.79 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=80.2
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~ 270 (330)
+.+|||+|++.|...+..++..+|++|+|+|+++....+... ++..+... ++| +|+|+||+|+.......
T Consensus 361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrE--hL~ll~~l--gIP~IIVVINKiDLv~d~e~l----- 431 (1289)
T 3avx_A 361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLGRQV--GVPYIIVFLNKCDMVDDEELL----- 431 (1289)
T ss_dssp EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHH--HHHHHHHH--TCSCEEEEEECCTTCCCHHHH-----
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHH--HHHHHHHc--CCCeEEEEEeecccccchhhH-----
Confidence 456666666888777777888999999999999865444332 44444432 678 89999999997531100
Q ss_pred CCCCCcCHHHHHHHHHHhC----CeeEEEEeeccC--------CCHHHHHHHHHHHhcCC
Q psy9997 271 NKQKPISFEQGEKLAKELK----AVKYVECSALTQ--------KGLKNVFDEAILAALEP 318 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~--------~~v~~~f~~l~~~i~~~ 318 (330)
....+++..+++.++ .++++++||++| .|++++|+.+...+-.+
T Consensus 432 ----e~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 432 ----ELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp ----HHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred ----HHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 112356777777765 268999999999 46899999888766443
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.56 E-value=3.1e-15 Score=132.45 Aligned_cols=129 Identities=20% Similarity=0.297 Sum_probs=85.8
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCC--CCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD 136 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~ 136 (330)
.++..+||+++|+.|+|||||+++|++..+ ...+.++........+..++ ..+.+|||||++.+..+...+
T Consensus 32 ~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~----- 104 (262)
T 3def_A 32 KDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQA----- 104 (262)
T ss_dssp TTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHH-----
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHH-----
Confidence 346789999999999999999999999874 34444444333333444444 478899999996554332111
Q ss_pred eEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccccccccCc-cccCCC
Q psy9997 137 VFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLRPL-SYPQTD 215 (330)
Q Consensus 137 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~~~-~~~~~d 215 (330)
++.++.. ....+|
T Consensus 105 ------------------------------------------------------------------~~~i~~~l~~~~~~ 118 (262)
T 3def_A 105 ------------------------------------------------------------------LELIKGFLVNRTID 118 (262)
T ss_dssp ------------------------------------------------------------------HHHHHHHTTTCEEC
T ss_pred ------------------------------------------------------------------HHHHHHHHhcCCCC
Confidence 1111111 123689
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCC---CCcEEEEEeccCCCCC
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQ---KTPFLLVGTQIDLRED 261 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilV~nK~Dl~~~ 261 (330)
++++|++++... +......|+..+..... ..|+++|+||+|+...
T Consensus 119 ~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 119 VLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred EEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 999999998765 55443367777776542 2499999999999643
No 178
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.55 E-value=5.2e-15 Score=126.85 Aligned_cols=120 Identities=29% Similarity=0.482 Sum_probs=92.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|..+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------ 86 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP------------------ 86 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH------------------
Confidence 46799999999999999999999999999999999999998888889999999999988721
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccc-cC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK-LG 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~-~~ 159 (330)
++ ..++..|++++|++++|||.... ..... +.
T Consensus 87 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 119 (214)
T 3q3j_B 87 ------YY------------------------------------DNVRPLCYSDSDAVLLCFDISRP-----ETVDSALK 119 (214)
T ss_dssp ------GG------------------------------------TTTGGGGCTTCSEEEEEEETTCT-----HHHHHHHT
T ss_pred ------hH------------------------------------HHHHHHHcCCCeEEEEEEECcCH-----HHHHHHHH
Confidence 11 34567789999999999985431 11222 45
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+... .+..|+.++|||.|+..
T Consensus 120 ~~~~~i~~~-~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 120 KWRTEILDY-CPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp HHHHHHHHH-CTTSEEEEEEECGGGGG
T ss_pred HHHHHHHHh-CCCCCEEEEEEChhhcc
Confidence 666555443 36788999999999853
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.53 E-value=2.4e-15 Score=143.39 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=68.7
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCCh---hhHhh---hhhcchhhhhhcCCCCc-EEEEEeccCCCCCchh
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP---SSFEN---VKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPT 264 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~---~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~ 264 (330)
+.+|||+|++.|......++..+|++++|+|+++. .+|+. .. .++..+.. .++| +++|+||+|+......
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~--~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHALLAFT--LGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHHHHHH--TTCCEEEEEEECGGGGTTCHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH-HHHHHHHH--cCCCeEEEEEEccccccCCHH
Confidence 44566666677777777788899999999999975 34431 11 11222222 3565 9999999999742110
Q ss_pred hHHhhhCCCCCcCHHHHHHHHHHhCC----eeEEEEeeccCCCHHHH
Q psy9997 265 LEKLAKNKQKPISFEQGEKLAKELKA----VKYVECSALTQKGLKNV 307 (330)
Q Consensus 265 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~ 307 (330)
. .....+++..+++.++. ++++++||++|.|++++
T Consensus 164 ~--------~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 164 R--------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp H--------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred H--------HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 0 01234566777777763 68999999999998743
No 180
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=3e-15 Score=140.43 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=55.5
Q ss_pred ccCccccCCCEEEEEEEcCCh-hhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH--HHHH
Q psy9997 206 LRPLSYPQTDVFLVCFSVVSP-SSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF--EQGE 282 (330)
Q Consensus 206 ~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~ 282 (330)
+...++.++++.+++|++... .++..+...|+..+. .++|+|+|+||+|+... +++.. +++.
T Consensus 129 IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~------------~ev~~~k~~i~ 193 (418)
T 2qag_C 129 VNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTP------------EECQQFKKQIM 193 (418)
T ss_dssp -CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCH------------HHHHHHHHHHH
T ss_pred HHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccH------------HHHHHHHHHHH
Confidence 445577788888888888764 577766545777664 37999999999999754 33333 6788
Q ss_pred HHHHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 283 KLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 283 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+++..++ ++++++||+++.+++++|..+...+
T Consensus 194 ~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 194 KEIQEHK-IKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHT-CCCCCCC-----------------C
T ss_pred HHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 8888887 7999999999999999888876643
No 181
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=121.86 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=91.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.+|+.+.|...+.+|+++.+...+.+++..+.+.+||+++..++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 82 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP---------------- 82 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcc----------------
Confidence 3679999999999999999999999999999999999888888889999999999998872211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.+ ..|++++|++++|||.... .....+..
T Consensus 83 --------------------------------------------~~~-~~~~~~~~~~ilv~d~~~~-----~s~~~~~~ 112 (187)
T 3c5c_A 83 --------------------------------------------RNC-ERYLNWAHAFLVVYSVDSR-----QSFDSSSS 112 (187)
T ss_dssp --------------------------------------------CCT-HHHHTTCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------hhH-HHHHhhCCEEEEEEECCCH-----HHHHHHHH
Confidence 111 2478899999999985421 12233445
Q ss_pred cceeeeccC---CCcccccccceeeccC
Q psy9997 161 WFWFISTEH---SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~---~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++|+|.|+.
T Consensus 113 ~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 113 YLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred HHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 665554432 2577899999999984
No 182
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.51 E-value=2.2e-14 Score=122.34 Aligned_cols=119 Identities=39% Similarity=0.746 Sum_probs=91.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.||+++.+...+.+++..+.+.+||+++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE------------------- 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 5799999999999999999999999999999999999988888899999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
++ ..++..|++++|++++|||.... .....+ ..
T Consensus 69 -----~~------------------------------------~~~~~~~~~~~d~~ilv~d~~~~-----~s~~~~~~~ 102 (212)
T 2j0v_A 69 -----DY------------------------------------SRLRPLSYRGADIFVLAFSLISK-----ASYENVLKK 102 (212)
T ss_dssp -----CC------------------------------------CC--CGGGTTCSEEEEEEETTCH-----HHHHHHHHT
T ss_pred -----HH------------------------------------HHHHHhhccCCCEEEEEEECCCH-----HHHHHHHHH
Confidence 11 33456789999999999984421 111222 25
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.++|||.|+..
T Consensus 103 ~~~~~~~~-~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 103 WMPELRRF-APNVPIVLVGTKLDLRD 127 (212)
T ss_dssp HHHHHHHH-CTTCCEEEEEECHHHHT
T ss_pred HHHHHHHh-CCCCCEEEEEeCHHhhh
Confidence 65555443 34788999999999853
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.51 E-value=5.1e-15 Score=145.18 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=55.2
Q ss_pred cccccccccccccccCccccCCCEEEEEEEcCChhhHhhh--hhc---chhhhhhcCCCCc-EEEEEeccCCCCCchhhH
Q psy9997 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV--KEK---WVPEITHHCQKTP-FLLVGTQIDLREDAPTLE 266 (330)
Q Consensus 193 ~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~--~~~---~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~ 266 (330)
.+|||+|++.|...+...+..+|+++||+|+++..++..+ ..+ .+..+.. .++| +|+|+||+|+.......
T Consensus 258 ~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~~~~~- 334 (592)
T 3mca_A 258 EIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSWSEDR- 334 (592)
T ss_dssp -CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTTCHHH-
T ss_pred EEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccccHHH-
Confidence 4455555577777777788889999999999864321111 001 1111111 2555 99999999997531100
Q ss_pred HhhhCCCCCcCHHHHHHHH-HHhCC----eeEEEEeeccCCCHH
Q psy9997 267 KLAKNKQKPISFEQGEKLA-KELKA----VKYVECSALTQKGLK 305 (330)
Q Consensus 267 ~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~e~Sa~~~~~v~ 305 (330)
.....+++..+. +..+. ++++++||++|.|++
T Consensus 335 -------~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 335 -------FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp -------HHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred -------HHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 011123344444 33342 479999999999998
No 184
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.50 E-value=2.9e-14 Score=118.48 Aligned_cols=119 Identities=51% Similarity=0.876 Sum_probs=92.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------------- 65 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED----------------- 65 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG-----------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHh-----------------
Confidence 789999999999999999999999999999999999988888889999999999999887211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG- 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~- 159 (330)
+ ..++..+++++|++++|||..... ....+.
T Consensus 66 -------~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 97 (186)
T 1mh1_A 66 -------Y------------------------------------DRLRPLSYPQTDVSLICFSLVSPA-----SFENVRA 97 (186)
T ss_dssp -------G------------------------------------TTTGGGGCTTCSEEEEEEETTCHH-----HHHHHHH
T ss_pred -------H------------------------------------HHHHHHhccCCcEEEEEEECCChh-----hHHHHHH
Confidence 1 234566899999999999854311 111222
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+... .+..|+.+++||.|+.
T Consensus 98 ~~~~~~~~~-~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 98 KWYPEVRHH-CPNTPIILVGTKLDLR 122 (186)
T ss_dssp THHHHHHHH-STTSCEEEEEECHHHH
T ss_pred HHHHHHHHh-CCCCCEEEEeEccccc
Confidence 455444432 2477889999999984
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.50 E-value=2.1e-14 Score=127.61 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=82.8
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCC--CCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~ 138 (330)
...+||+++|++|+|||||+++|++..+. ..+.++... .....++.....+.+|||||.+.+..+..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~l~iiDTpG~~~~~~~~~--------- 105 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR--PVMVSRSRAGFTLNIIDTPGLIEGGYIND--------- 105 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS--CEEEEEEETTEEEEEEECCCSEETTEECH---------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccee--eEEEEEeeCCeEEEEEECCCCCCCccchH---------
Confidence 45799999999999999999999988753 222222211 22333444566789999999854332210
Q ss_pred EEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCcccccccccccccccccccc-CccccCCCEE
Q psy9997 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQEDYDRLR-PLSYPQTDVF 217 (330)
Q Consensus 139 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~~~~~~-~~~~~~~d~~ 217 (330)
.....+. ....+.+|++
T Consensus 106 --------------------------------------------------------------~~~~~i~~~~~~~~~d~i 123 (270)
T 1h65_A 106 --------------------------------------------------------------MALNIIKSFLLDKTIDVL 123 (270)
T ss_dssp --------------------------------------------------------------HHHHHHHHHTTTCEECEE
T ss_pred --------------------------------------------------------------HHHHHHHHHhhcCCCCEE
Confidence 0000010 0124578999
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCC-C--CcEEEEEeccCCCCC
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQ-K--TPFLLVGTQIDLRED 261 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilV~nK~Dl~~~ 261 (330)
++|+|++.. ++......|+..+...+. + .|+++|+||+|+...
T Consensus 124 l~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 124 LYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp EEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred EEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 999999764 455444367877766543 2 799999999999754
No 186
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.50 E-value=3.8e-14 Score=117.54 Aligned_cols=122 Identities=13% Similarity=0.211 Sum_probs=92.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|.+..+...+.+++..+.+.+||+++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~-------------------- 64 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ-------------------- 64 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCc--------------------
Confidence 468999999999999999999999999999999999888888899999999999998871
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.+ ..++..|++++|++++|||.... .....+..|
T Consensus 65 ----~~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 99 (181)
T 3t5g_A 65 ----DEY------------------------------------SIFPQTYSIDINGYILVYSVTSI-----KSFEVIKVI 99 (181)
T ss_dssp ----CTT------------------------------------CCCCGGGTTTCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred ----hhh------------------------------------hHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 111 33466789999999999985431 122234445
Q ss_pred ceeeec-cCCCcccccccceeeccCCCc
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~~~ 188 (330)
+..+.. ...+..|+.++|+|.|+...+
T Consensus 100 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 100 HGKLLDMVGKVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp HHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhcc
Confidence 554433 234577899999999985433
No 187
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.49 E-value=3.9e-14 Score=118.08 Aligned_cols=118 Identities=34% Similarity=0.551 Sum_probs=91.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.||++..+...+.+++..+.+.+||+++..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP------------------- 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG-------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCCh-------------------
Confidence 4789999999999999999999999999999999998888888889999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
.+ ..++..+++++|++++|||.... . ....+ ..
T Consensus 67 -----~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~--~---s~~~~~~~ 100 (184)
T 1m7b_A 67 -----YY------------------------------------DNVRPLSYPDSDAVLICFDISRP--E---TLDSVLKK 100 (184)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--H---HHHHHHHT
T ss_pred -----hh------------------------------------hhhHHhhcCCCcEEEEEEECCCH--H---HHHHHHHH
Confidence 11 33456789999999999985431 1 11222 45
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .+..|+.++|+|.|+.
T Consensus 101 ~~~~i~~~-~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 101 WKGEIQEF-CPNTKMLLVGCKSDLR 124 (184)
T ss_dssp HHHHHHHH-CTTCEEEEEEECGGGG
T ss_pred HHHHHHHH-CCCCCEEEEEEcchhh
Confidence 55444332 3578899999999985
No 188
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.49 E-value=2.2e-14 Score=119.93 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=88.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+++||+++|++|||||||+.+|+.+.|...+.+| .+.+.+.+.+++..+.+++||+++...++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ--------------- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH---------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh---------------
Confidence 67899999999999999999999999999999998 55677889999999999999988722111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
|++++|++++|||.... .....+..
T Consensus 82 --------------------------------------------------~~~~~~~~i~v~d~~~~-----~s~~~~~~ 106 (184)
T 3ihw_A 82 --------------------------------------------------FAAWVDAVVFVFSLEDE-----ISFQTVYN 106 (184)
T ss_dssp --------------------------------------------------HHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------------eecCCCEEEEEEECcCH-----HHHHHHHH
Confidence 46779999999984431 12233344
Q ss_pred cceeeeccC-CCcccccccceeeccC
Q psy9997 161 WFWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++|+|.|+.
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 107 YFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp HHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred HHHHHHHhcCCCCCCEEEEEECcccc
Confidence 666655543 2677889999999983
No 189
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.48 E-value=5.8e-14 Score=117.98 Aligned_cols=119 Identities=36% Similarity=0.626 Sum_probs=93.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE------------------- 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 4699999999999999999999999999999999999998888999999999999988711
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
.+ ..++..+++++|++++|||.... .....+ ..
T Consensus 83 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 116 (194)
T 3reg_A 83 -----EY------------------------------------DRLRPLSYADSDVVLLCFAVNNR-----TSFDNISTK 116 (194)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH-----HHHHHHHHT
T ss_pred -----HH------------------------------------HHHhHhhccCCcEEEEEEECCCH-----HHHHHHHHH
Confidence 11 34567789999999999984432 111222 45
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|...+.. ..+..|+.++|+|.|+..
T Consensus 117 ~~~~~~~-~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 117 WEPEIKH-YIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp HHHHHHH-HCTTSEEEEEEECGGGCC
T ss_pred HHHHHHH-hCCCCCEEEEEEChhhcc
Confidence 5554443 345788999999999853
No 190
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.48 E-value=2.1e-14 Score=143.41 Aligned_cols=117 Identities=12% Similarity=0.141 Sum_probs=78.5
Q ss_pred ccccccccccccc---ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHH
Q psy9997 191 DRSLFDTAGQEDY---DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEK 267 (330)
Q Consensus 191 ~~~~~D~~g~e~~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~ 267 (330)
.+.+|||||.... ......+++++|++++|+|.+++.+..+.. .|...+... +.|+++|+||+|+......
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~-~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~--- 248 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERR-YLENYIKGR--GLTVFFLVNAWDQVRESLI--- 248 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH-HHHHHTTTS--CCCEEEEEECGGGGGGGCS---
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHH-HHHHHHHhh--CCCEEEEEECccccccccc---
Confidence 5788999997763 344556788999999999999988888776 555455432 6789999999999653100
Q ss_pred hhhCCCCCc-CHH----HHHH-----HHHHhC-------CeeEEEEeec--------------cCCCHHHHHHHHHHHhc
Q psy9997 268 LAKNKQKPI-SFE----QGEK-----LAKELK-------AVKYVECSAL--------------TQKGLKNVFDEAILAAL 316 (330)
Q Consensus 268 ~~~~~~~~v-~~~----~~~~-----~~~~~~-------~~~~~e~Sa~--------------~~~~v~~~f~~l~~~i~ 316 (330)
..... ..+ .... +....+ ..+++++||+ ++.|+++++..+...+.
T Consensus 249 ----~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 249 ----DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp ----STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ----ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 00000 000 1111 111111 1469999999 99999999999887764
Q ss_pred C
Q psy9997 317 E 317 (330)
Q Consensus 317 ~ 317 (330)
+
T Consensus 325 ~ 325 (695)
T 2j69_A 325 R 325 (695)
T ss_dssp H
T ss_pred H
Confidence 3
No 191
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.47 E-value=4.9e-14 Score=140.13 Aligned_cols=65 Identities=18% Similarity=0.117 Sum_probs=48.5
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
...+|||+|++.|......+++.+|++++|+|.++........ ++..+.. .++|+++|+||+|+.
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~--~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTER--AWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH--HHHHHHH--TTCCEEEEEECGGGC
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHH--HHHHHHH--ccCCEEEEecCCchh
Confidence 3456777777887777777888999999999988765544432 4444443 379999999999997
No 192
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.47 E-value=7.4e-14 Score=117.94 Aligned_cols=118 Identities=41% Similarity=0.776 Sum_probs=84.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~-------------------- 78 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ-------------------- 78 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCS--------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCC--------------------
Confidence 578999999999999999999999999999999999888888899999999999998872
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
+++ ..++..+++++|++++|||.... .....+ ..
T Consensus 79 ----~~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 113 (201)
T 2q3h_A 79 ----DEF------------------------------------DKLRPLCYTNTDIFLLCFSVVSP-----SSFQNVSEK 113 (201)
T ss_dssp ----TTC------------------------------------SSSGGGGGTTCSEEEEEEETTCH-----HHHHHHHHT
T ss_pred ----HHH------------------------------------HHHhHhhcCCCcEEEEEEECCCH-----HHHHHHHHH
Confidence 111 33456789999999999985432 111222 25
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .+..|+.++|||.|+.
T Consensus 114 ~~~~~~~~-~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 114 WVPEIRCH-CPKAPIILVGTQSDLR 137 (201)
T ss_dssp HHHHHHHH-CSSSCEEEEEECGGGG
T ss_pred HHHHHHHh-CCCCCEEEEEECHhhh
Confidence 55544433 3478889999999984
No 193
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.47 E-value=2.1e-14 Score=117.07 Aligned_cols=120 Identities=21% Similarity=0.296 Sum_probs=92.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||++++..+.+...+.+|++..+...+.+++..+.+.+||+++.
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~------------------- 61 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT------------------- 61 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSS-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCCh-------------------
Confidence 8999999999999999999999999999999999999888888888999999999998861
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.++ ..++..+++++|++++|||.... .....+..
T Consensus 62 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 95 (167)
T 1c1y_A 62 -----EQF------------------------------------TAMRDLYMKNGQGFALVYSITAQ-----STFNDLQD 95 (167)
T ss_dssp -----CSS------------------------------------TTHHHHHHHHCSEEEEEEETTCH-----HHHHTHHH
T ss_pred -----HHH------------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 111 23455678899999999974432 11223334
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... ..+..|+.+++||.|+.
T Consensus 96 ~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 96 LREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp HHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHhhCcCCCcEEEEEECcccc
Confidence 54444332 34577889999999984
No 194
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=4.5e-14 Score=119.86 Aligned_cols=118 Identities=22% Similarity=0.320 Sum_probs=92.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ .+.+.+++..+.+.+||+++..++
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------------- 88 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF----------------- 88 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-----------------
Confidence 58999999999999999999999999999999998555 668889999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 89 -------------------------------------------~~~~~~~~~~~d~~i~v~D~~~~-----~s~~~~~~~ 120 (201)
T 2ew1_A 89 -------------------------------------------RSITQSYYRSANALILTYDITCE-----ESFRCLPEW 120 (201)
T ss_dssp -------------------------------------------HHHHGGGSTTCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456789999999999985432 122234456
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++.++|||.|+.
T Consensus 121 ~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 121 LREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHhcCCCCCEEEEEECCCCc
Confidence 666555555678889999999984
No 195
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.47 E-value=6.1e-14 Score=119.40 Aligned_cols=118 Identities=34% Similarity=0.551 Sum_probs=91.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+...+.+++..+.+.+||+++..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------- 87 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP------------------- 87 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG-------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH-------------------
Confidence 3689999999999999999999999999999999998887788888999999999988721
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
.+ ..++..+++++|++++|||.... . ....+ ..
T Consensus 88 -----~~------------------------------------~~~~~~~~~~~d~~ilv~D~~~~--~---s~~~~~~~ 121 (205)
T 1gwn_A 88 -----YY------------------------------------DNVRPLSYPDSDAVLICFDISRP--E---TLDSVLKK 121 (205)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--H---HHHHHHHT
T ss_pred -----hh------------------------------------hHHHHhhccCCCEEEEEEECCCH--H---HHHHHHHH
Confidence 11 23456689999999999985432 1 11222 45
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .+..|+.++|||.|+.
T Consensus 122 ~~~~i~~~-~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 122 WKGEIQEF-CPNTKMLLVGCKSDLR 145 (205)
T ss_dssp HHHHHHHH-CTTCEEEEEEECGGGG
T ss_pred HHHHHHHH-CCCCCEEEEEechhhc
Confidence 55544332 3578899999999985
No 196
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.46 E-value=2.7e-14 Score=132.14 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=62.5
Q ss_pred ccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC-CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHH
Q psy9997 204 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGE 282 (330)
Q Consensus 204 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 282 (330)
..+...+++++|++++|+|.++...... .|+..+.... .+.|+++|+||+|+... +....+.+.
T Consensus 163 ~~~~~~~i~~~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~Dl~~~------------~~~~~~~~~ 227 (360)
T 3t34_A 163 ENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKIDLMDK------------GTDAVEILE 227 (360)
T ss_dssp HHHHHHHHHSSSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECGGGCCT------------TCCSHHHHT
T ss_pred HHHHHHHhhcCCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCCccCCC------------cccHHHHHc
Confidence 4556667889999999998865443321 3444444433 36899999999999764 334445555
Q ss_pred HHHHHhCCeeEEEEeeccCCCHHHHHHH
Q psy9997 283 KLAKELKAVKYVECSALTQKGLKNVFDE 310 (330)
Q Consensus 283 ~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 310 (330)
.++..++ .+|+++|++++.++++.+..
T Consensus 228 ~~~~~~~-~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 228 GRSFKLK-YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp TSSSCCS-SCCEEECCCCHHHHHTTCCH
T ss_pred Ccccccc-CCeEEEEECChHHhccCCCH
Confidence 5555555 68999999999888776544
No 197
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.46 E-value=2.8e-14 Score=118.51 Aligned_cols=119 Identities=18% Similarity=0.348 Sum_probs=72.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.||++..+ ...+.+++..+.+.+||+++...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 70 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----------------- 70 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhh-----------------
Confidence 58999999999999999999999999888899998655 568888999999999998862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... . ....+..|
T Consensus 71 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~~ 102 (183)
T 2fu5_C 71 -------------------------------------------RTITTAYYRGAMGIMLVYDITNE--K---SFDNIRNW 102 (183)
T ss_dssp ----------------------------------------------CCTTTTTCSEEEEEEETTCH--H---HHHHHHHH
T ss_pred -------------------------------------------hhhHHHHHhcCCEEEEEEECcCH--H---HHHHHHHH
Confidence 23456789999999999985432 1 12344457
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+.++|||.|+..
T Consensus 103 ~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 103 IRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp HHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred HHHHHHhcCCCCCEEEEEECccCCc
Confidence 6666555556789999999999854
No 198
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.46 E-value=6.6e-14 Score=131.23 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=71.7
Q ss_pred ccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcC---CCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 211 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---QKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 211 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
.+.++.++.++|++ ...+.++. .|..++.... ...|.++|+||+|+... ...++..++.+.
T Consensus 233 ~era~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~--------------~~~~~l~~~l~~ 296 (416)
T 1udx_A 233 IARTRVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE--------------EAVKALADALAR 296 (416)
T ss_dssp HTSSSEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH--------------HHHHHHHHHHHT
T ss_pred HHHHHhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH--------------HHHHHHHHHHHh
Confidence 34689999999998 77777776 7777766654 36899999999999642 122344455555
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
.+ .+++++||+++.|++++++.+...+.+.+.
T Consensus 297 ~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 297 EG-LAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp TT-SCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred cC-CeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 55 689999999999999999999999976654
No 199
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1e-13 Score=116.33 Aligned_cols=119 Identities=49% Similarity=0.888 Sum_probs=91.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~------------------- 77 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE------------------- 77 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCc-------------------
Confidence 3589999999999999999999999999999999998888888889999999999888621
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-C
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG-G 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-~ 160 (330)
++ ..++..|++++|++++|||.... .+ ...+. .
T Consensus 78 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 111 (194)
T 2atx_A 78 -----DY------------------------------------DRLRPLSYPMTDVFLICFSVVNP--AS---FQNVKEE 111 (194)
T ss_dssp -----SS------------------------------------TTTGGGGCTTCSEEEEEEETTCH--HH---HHHHHHT
T ss_pred -----ch------------------------------------hHHHHHhcCCCCEEEEEEECCCH--HH---HHHHHHH
Confidence 11 33566789999999999984432 11 11222 4
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.++|+|.|+..
T Consensus 112 ~~~~~~~~-~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 112 WVPELKEY-APNVPFLLIGTQIDLRD 136 (194)
T ss_dssp HHHHHHHH-STTCCEEEEEECTTSTT
T ss_pred HHHHHHHh-CCCCCEEEEEEChhhcc
Confidence 55444432 34778999999999853
No 200
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.45 E-value=6.3e-14 Score=119.05 Aligned_cols=120 Identities=53% Similarity=0.919 Sum_probs=90.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.+|..+.+...+.+|+++.+...+.+++..+.+.+||+++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------ 89 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE------------------ 89 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG------------------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCch------------------
Confidence 46799999999999999999999999999999999998888888999999999999988721
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-C
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-G 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~ 159 (330)
.+ ..++..+++++|++++|||.... .+ ...+ .
T Consensus 90 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~ 122 (204)
T 4gzl_A 90 ------DY------------------------------------DRLRPLSYPQTDVFLICFSLVSP--AS---FENVRA 122 (204)
T ss_dssp ------GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--HH---HHHHHH
T ss_pred ------hh------------------------------------HHHHHHHhccCCEEEEEEECCCH--HH---HHHHHH
Confidence 11 34566789999999999984431 11 1222 2
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+.... +..|+.++|||.|+..
T Consensus 123 ~~~~~~~~~~-~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 123 KWYPEVRHHC-PNTPIILVGTKLDLRD 148 (204)
T ss_dssp THHHHHHHHC-SSCCEEEEEECHHHHT
T ss_pred HHHHHHHHhC-CCCCEEEEEechhhcc
Confidence 5555544433 6788999999999853
No 201
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.45 E-value=7.1e-14 Score=114.37 Aligned_cols=119 Identities=22% Similarity=0.380 Sum_probs=89.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+++||+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 68 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF---------------- 68 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhh----------------
Confidence 478999999999999999999999999999999998666 567888899999999998872211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 69 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 99 (170)
T 1z08_A 69 --------------------------------------------HALGPIYYRDSNGAILVYDITDE-----DSFQKVKN 99 (170)
T ss_dssp ------------------------------------------------CCSSTTCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------hhhHHHHhccCCEEEEEEECcCH-----HHHHHHHH
Confidence 23455688999999999985432 12233445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++++|.|+.
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccc
Confidence 6555544444567889999999984
No 202
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.45 E-value=2.2e-13 Score=115.53 Aligned_cols=119 Identities=16% Similarity=0.333 Sum_probs=93.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G--------------------- 66 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG--------------------- 66 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTT---------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCC---------------------
Confidence 58999999999999999999999999999999998666 56888999999999999886
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++ ..++..+++++|++++|||..... ....+..|
T Consensus 67 ---~~~~------------------------------------~~~~~~~~~~~d~vilv~d~~~~~-----s~~~~~~~ 102 (206)
T 2bcg_Y 67 ---QERF------------------------------------RTITSSYYRGSHGIIIVYDVTDQE-----SFNGVKMW 102 (206)
T ss_dssp ---TTTT------------------------------------TCCCGGGGTTCSEEEEEEETTCHH-----HHHHHHHH
T ss_pred ---hHHH------------------------------------HHHHHHhccCCCEEEEEEECcCHH-----HHHHHHHH
Confidence 1111 334667899999999999854321 12334456
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+.++++|.|+..
T Consensus 103 ~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 103 LQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHhcCCCCCEEEEEECCCCcc
Confidence 6666555556788899999999854
No 203
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.45 E-value=7.3e-14 Score=116.02 Aligned_cols=121 Identities=22% Similarity=0.308 Sum_probs=94.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++++||+++|++|||||||+++|..+.|...+.+|+...+.....+++..+.+.+||+++..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------ 77 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE------------------ 77 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCch------------------
Confidence 36799999999999999999999999999999999998888889999999999999988611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..++..+++++|++++|||.... .....+..
T Consensus 78 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 110 (183)
T 3kkq_A 78 ------EF------------------------------------SAMREQYMRTGDGFLIVYSVTDK-----ASFEHVDR 110 (183)
T ss_dssp ------GG------------------------------------CSSHHHHHHHCSEEEEEEETTCH-----HHHHTHHH
T ss_pred ------hh------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHH
Confidence 11 23455678899999999985432 11233445
Q ss_pred cceeeec-cCCCcccccccceeeccCC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+.. ...+..|+.++|+|.|+..
T Consensus 111 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 111 FHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 5555533 3456778899999999853
No 204
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.44 E-value=9.7e-14 Score=118.76 Aligned_cols=119 Identities=33% Similarity=0.639 Sum_probs=77.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++...+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------------- 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY----------------- 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC-----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 579999999999999999999999999999999999888888899999999999998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
..++..|++++|++++|||.... .+ ...+ ..
T Consensus 96 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 127 (214)
T 2j1l_A 96 -------------------------------------------DRLRPLFYPDASVLLLCFDVTSP--NS---FDNIFNR 127 (214)
T ss_dssp ----------------------------------------------------CEEEEEEEEETTCH--HH---HHHHHHT
T ss_pred -------------------------------------------hHHHHHHhccCCEEEEEEECcCH--HH---HHHHHHH
Confidence 23455688999999999985431 11 1222 25
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.++|+|.|+..
T Consensus 128 ~~~~~~~~-~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 128 WYPEVNHF-CKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp HHHHHHHH-CSSCCEEEEEECGGGGS
T ss_pred HHHHHHHh-CCCCCEEEEEEChhhhc
Confidence 55544332 35678999999999853
No 205
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.44 E-value=7.1e-14 Score=115.48 Aligned_cols=121 Identities=26% Similarity=0.360 Sum_probs=93.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+++|..+.|...+.+|++..+...+.+++..+.+.+||+++.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~------------------- 67 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ------------------- 67 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCT-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 3579999999999999999999999999999999999888888899999999999998871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.++ ..++..+++++|++++|||.... .....+..
T Consensus 68 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 101 (181)
T 2fn4_A 68 -----EEF------------------------------------GAMREQYMRAGHGFLLVFAINDR-----QSFNEVGK 101 (181)
T ss_dssp -----TTT------------------------------------SCCHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----hhh------------------------------------HHHHHHHHhhCCEEEEEEeCCCH-----HHHHHHHH
Confidence 111 23455678899999999984431 11223445
Q ss_pred cceeeec-cCCCcccccccceeeccCC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+.. ......|+.++++|.|+..
T Consensus 102 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 102 LFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 5555422 3345678999999999853
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.44 E-value=8.2e-14 Score=119.60 Aligned_cols=108 Identities=19% Similarity=0.062 Sum_probs=70.7
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
.++.+||++|+-.... .+...++.+++|+|+++... ... .+... .+.|+++|+||+|+...
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~-~~~~~-----~~~~~iiv~NK~Dl~~~-------- 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVE-KHPEI-----FRVADLIVINKVALAEA-------- 169 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHH-HCHHH-----HHTCSEEEEECGGGHHH--------
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhh-hhhhh-----hhcCCEEEEecccCCcc--------
Confidence 3556888888611111 11125688999999986532 111 12211 25789999999999642
Q ss_pred hCCCCCcCHHHHHHHHHHhC-CeeEEEEeeccCCCHHHHHHHHHHHhcCCCC
Q psy9997 270 KNKQKPISFEQGEKLAKELK-AVKYVECSALTQKGLKNVFDEAILAALEPPE 320 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~~~ 320 (330)
+....+++.++++..+ ..+++++||++|.|++++|+.+...+.+...
T Consensus 170 ----~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 170 ----VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp ----HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred ----hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2345666767766653 3689999999999999999999998876543
No 207
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=116.55 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=88.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G--------------------- 81 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG--------------------- 81 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECC---------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCC---------------------
Confidence 57999999999999999999999999999999999988877888888899999999886
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+.+ ..++..+++++|++++|||.... .....+..|
T Consensus 82 ---~~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 117 (201)
T 3oes_A 82 ---QDEY------------------------------------SILPYSFIIGVHGYVLVYSVTSL-----HSFQVIESL 117 (201)
T ss_dssp ---CCTT------------------------------------CCCCGGGTTTCCEEEEEEETTCH-----HHHHHHHHH
T ss_pred ---ccch------------------------------------HHHHHHHHhcCCEEEEEEeCCCH-----HHHHHHHHH
Confidence 1111 33466789999999999985431 122334455
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 118 ~~~i~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 118 YQKLHEGHGKTRVPVVLVGNKADLSP 143 (201)
T ss_dssp HHHHHC-----CCCEEEEEECTTCGG
T ss_pred HHHHHHhcCCCCCCEEEEEECccCcc
Confidence 5544332 345678999999999853
No 208
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=9.8e-14 Score=114.73 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=89.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCC-CCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.+||+++|++|||||||+.+|..+.+. ..+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~--------------- 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF--------------- 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH---------------
Confidence 4789999999999999999999999995 46788888666 456688999999999998872211
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..++..+++++|++++|||..... ....+.
T Consensus 74 ---------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~ 103 (180)
T 2g6b_A 74 ---------------------------------------------RSVTHAYYRDAHALLLLYDVTNKA-----SFDNIQ 103 (180)
T ss_dssp --------------------------------------------------CCGGGCSEEEEEEETTCHH-----HHHTHH
T ss_pred ---------------------------------------------HHHHHHHccCCCEEEEEEECCCHH-----HHHHHH
Confidence 233556789999999999854321 123344
Q ss_pred CcceeeeccCCCcccccccceeeccCCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
.|+..+........|+.+++||.|+...
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 5666555544567889999999999643
No 209
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.43 E-value=8.4e-14 Score=113.71 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=93.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++.+||+++|++|||||||+.+|..+.+...+.+|++..+ ...+.+++..+.+.+||+++...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---------------- 67 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER---------------- 67 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH----------------
Confidence 3689999999999999999999999999999999998666 66888899999999999886211
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ ..++..+++++|++++|||..... ....+.
T Consensus 68 ------------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~ 98 (170)
T 1r2q_A 68 ------------Y--------------------------------HSLAPMYYRGAQAAIVVYDITNEE-----SFARAK 98 (170)
T ss_dssp ------------G--------------------------------GGGHHHHHTTCSEEEEEEETTCHH-----HHHHHH
T ss_pred ------------h--------------------------------hhhhHHhccCCCEEEEEEECCCHH-----HHHHHH
Confidence 1 234556789999999999854321 123344
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.....+..++.++|+|.|+.
T Consensus 99 ~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 99 NWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCc
Confidence 56666655556788899999999984
No 210
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.43 E-value=4.1e-14 Score=119.91 Aligned_cols=119 Identities=17% Similarity=0.237 Sum_probs=84.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++..++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------------- 91 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---------------- 91 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH----------------
Confidence 368999999999999999999999999999999998655 678889999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|++++|++++|||.... .....+..
T Consensus 92 --------------------------------------------~~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~~ 122 (201)
T 2hup_A 92 --------------------------------------------RTITQSYYRSANGAILAYDITKR-----SSFLSVPH 122 (201)
T ss_dssp --------------------------------------------HHHHHHHHTTCSEEEEEEETTBH-----HHHHTHHH
T ss_pred --------------------------------------------HHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHH
Confidence 23456688999999999985432 11234446
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++|||.|+.
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHHhcCCCCCEEEEEECCccc
Confidence 6666655555778899999999985
No 211
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.43 E-value=1e-13 Score=113.36 Aligned_cols=120 Identities=16% Similarity=0.339 Sum_probs=94.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++.+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++....+.+||+++..
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------------- 66 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE----------------- 66 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch-----------------
Confidence 3679999999999999999999999999999999998666 6688889999999999988721
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ + ..+...+++++|++++|||.... .....+.
T Consensus 67 -------~----~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~ 98 (170)
T 1z0j_A 67 -------R----F--------------------------------RALAPMYYRGSAAAIIVYDITKE-----ETFSTLK 98 (170)
T ss_dssp -------G----G--------------------------------GGGTHHHHTTCSEEEEEEETTCH-----HHHHHHH
T ss_pred -------h----h--------------------------------hcccHhhCcCCCEEEEEEECcCH-----HHHHHHH
Confidence 1 1 33456688999999999985432 1223345
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.....+..++.++|+|.|+.
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 99 NWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp HHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred HHHHHHHHhCCCCCcEEEEEECCccc
Confidence 56666666666788899999999984
No 212
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.43 E-value=5.4e-14 Score=114.53 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=92.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.++..+.+...+.+|.+..+...+.+++..+.+.+||+++...+
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------------- 65 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---------------- 65 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh----------------
Confidence 7899999999999999999999999999999999999888888889999999999998862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|++++|++++|||.... .....+..
T Consensus 66 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 96 (168)
T 1u8z_A 66 --------------------------------------------AAIRDNYFRSGEGFLCVFSITEM-----ESFAATAD 96 (168)
T ss_dssp --------------------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred --------------------------------------------HHHHHHHhhcCCEEEEEEECCCH-----HHHHHHHH
Confidence 23455678899999999985432 11223344
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccc
Confidence 55544443 23567889999999984
No 213
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.43 E-value=8.7e-14 Score=114.74 Aligned_cols=120 Identities=20% Similarity=0.279 Sum_probs=92.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc-ceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+.+||+++|++|||||||+++++.+.|...+.+|++. .+...+.+++..+.+.+||+++...
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~---------------- 75 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------------- 75 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG----------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH----------------
Confidence 57899999999999999999999999999999999974 4477888999999999999886111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ ..+...+++++|++++|||.... .....+.
T Consensus 76 --------~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~ 106 (179)
T 2y8e_A 76 --------F------------------------------------RSLIPSYIRDSTVAVVVYDITNT-----NSFHQTS 106 (179)
T ss_dssp --------G------------------------------------GGGSHHHHHTCSEEEEEEETTCH-----HHHHTHH
T ss_pred --------H------------------------------------HHHHHHHhcCCCEEEEEEECCCH-----HHHHHHH
Confidence 1 23455678899999999985431 1123345
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.....+..|+.++++|.|+.
T Consensus 107 ~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 107 KWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp HHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECCccc
Confidence 56655555445678889999999984
No 214
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=3.1e-13 Score=114.90 Aligned_cols=119 Identities=39% Similarity=0.678 Sum_probs=84.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 83 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQ------------------- 83 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTC-------------------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 4678999999999999999999999999999999999888777889999999999998871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-C
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-G 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~ 159 (330)
+.+ ..++..+++++|++++|||.... . ....+ .
T Consensus 84 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~ 117 (207)
T 2fv8_A 84 -----EDY------------------------------------DRLRPLSYPDTDVILMCFSVDSP--D---SLENIPE 117 (207)
T ss_dssp -----TTC------------------------------------TTTGGGGCTTCCEEEEEEETTCH--H---HHHHHHH
T ss_pred -----HHH------------------------------------HHHHHhhcCCCCEEEEEEECCCH--H---HHHHHHH
Confidence 111 23456789999999999984431 1 11122 3
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.. ..+..|+.+++||.|+.
T Consensus 118 ~~~~~~~~-~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 118 KWVPEVKH-FCPNVPIILVANKKDLR 142 (207)
T ss_dssp THHHHHHH-HSTTCCEEEEEECGGGG
T ss_pred HHHHHHHH-hCCCCCEEEEEEchhhh
Confidence 45444433 23577889999999985
No 215
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.43 E-value=1.4e-13 Score=115.44 Aligned_cols=119 Identities=21% Similarity=0.320 Sum_probs=88.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------ 81 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE------------------ 81 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCch------------------
Confidence 579999999999999999999999999998999988665 5688899999999999888711
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..++..+++++|++++|||.... .....+..
T Consensus 82 ------~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~ 114 (191)
T 2a5j_A 82 ------SF------------------------------------RSITRSYYRGAAGALLVYDITRR-----ETFNHLTS 114 (191)
T ss_dssp ------GT------------------------------------SCCCHHHHTTCSEEEEEEETTCH-----HHHHTHHH
T ss_pred ------hh------------------------------------hhhHHHHhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 11 33456788999999999985432 12234455
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..++.+++||.|+.
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccC
Confidence 6666655556778899999999984
No 216
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.42 E-value=2.2e-13 Score=112.72 Aligned_cols=121 Identities=16% Similarity=0.270 Sum_probs=93.8
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
++.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------------- 73 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER---------------- 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG----------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh----------------
Confidence 3579999999999999999999999999999999998665 66888899999999998886111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+ ..++..+++++|++++|||..... ....+.
T Consensus 74 ------------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~ 104 (181)
T 2efe_B 74 ------------Y--------------------------------HSLAPMYYRGAAAAIIVFDVTNQA-----SFERAK 104 (181)
T ss_dssp ------------G--------------------------------GGGTHHHHTTCSEEEEEEETTCHH-----HHHHHH
T ss_pred ------------h--------------------------------hhhhHHHhccCCEEEEEEECCCHH-----HHHHHH
Confidence 1 334567889999999999844321 123344
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+.....+..|+.++++|.|+..
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLD 131 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 666666555567888999999999854
No 217
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.42 E-value=2.7e-13 Score=113.35 Aligned_cols=120 Identities=27% Similarity=0.314 Sum_probs=88.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.++..+.+...+.+|..+.+...+.+++..+.+.+||+++...+
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 82 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---------------- 82 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHH----------------
Confidence 6889999999999999999999999999999999998888888899999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..++++++++++||+..... ....+..
T Consensus 83 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 113 (190)
T 3con_A 83 --------------------------------------------SAMRDQYMRTGEGFLCVFAINNSK-----SFADINL 113 (190)
T ss_dssp ---------------------------------------------------CTTCSEEEEEEETTCHH-----HHHHHHH
T ss_pred --------------------------------------------HHHHHHhhCcCCEEEEEEECcCHH-----HHHHHHH
Confidence 223556789999999999844321 1223344
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....++.++++|.|+.
T Consensus 114 ~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 114 YREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 54444332 23467889999999985
No 218
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.6e-13 Score=116.74 Aligned_cols=119 Identities=17% Similarity=0.257 Sum_probs=85.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--------------------- 71 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAG--------------------- 71 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTT---------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCC---------------------
Confidence 58999999999999999999999999999999998666 56788999999999999887
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+++ ..++..+++++|++++|||.... .....+..|
T Consensus 72 ---~~~~------------------------------------~~~~~~~~~~~d~vilV~D~~~~-----~s~~~~~~~ 107 (223)
T 3cpj_B 72 ---QERY------------------------------------RAITSAYYRGAVGALIVYDISKS-----SSYENCNHW 107 (223)
T ss_dssp ---TTTT------------------------------------TCCCGGGTTTCCEEEEEEC-CCH-----HHHHHHHHH
T ss_pred ---ccch------------------------------------hhhHHHHhccCCEEEEEEeCCCH-----HHHHHHHHH
Confidence 1121 34567789999999999985432 122334456
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.....+..|+.++++|.|+..
T Consensus 108 l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 108 LSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 6666555556788999999999853
No 219
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.42 E-value=4.5e-14 Score=117.00 Aligned_cols=120 Identities=42% Similarity=0.757 Sum_probs=75.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.+|..+.|...+.||+++.+...+.+++..+.+.+||+++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 66 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ------------------- 66 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC--------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 3579999999999999999999999999999999998888766777888899999988871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG- 159 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~- 159 (330)
+++ ..++..+++++|++++|||.... . ....+.
T Consensus 67 -----~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~ 100 (182)
T 3bwd_D 67 -----EDY------------------------------------NRLRPLSYRGADVFILAFSLISK--A---SYENVSK 100 (182)
T ss_dssp -----CTT------------------------------------TTTGGGGGTTCSEEEEEEETTCH--H---HHHHHHH
T ss_pred -----hhh------------------------------------hhhHHhhccCCCEEEEEEECCCH--H---HHHHHHH
Confidence 111 34566789999999999984421 1 112222
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+... .+..|+.+++||.|+..
T Consensus 101 ~~~~~~~~~-~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 101 KWIPELKHY-APGVPIVLVGTKLDLRD 126 (182)
T ss_dssp THHHHHHHH-CTTCCEEEEEECHHHHT
T ss_pred HHHHHHHHh-CCCCCEEEEEechhhhc
Confidence 455544433 24778999999999843
No 220
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.41 E-value=3.7e-13 Score=113.84 Aligned_cols=119 Identities=38% Similarity=0.674 Sum_probs=91.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
..+||+++|++|||||||+.+|..+.|...+.||++..+...+.+++..+.+.+||+++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~------------------- 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE------------------- 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG-------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCch-------------------
Confidence 4689999999999999999999999999999999998887788899999999999888611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CC
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GG 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~ 160 (330)
++ ..++..+++++|++++|||.... . ....+ ..
T Consensus 85 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~~ 118 (201)
T 2gco_A 85 -----DY------------------------------------DRLRPLSYPDTDVILMCFSIDSP--D---SLENIPEK 118 (201)
T ss_dssp -----GG------------------------------------TTTGGGGCTTCSEEEEEEETTCH--H---HHHHHHHT
T ss_pred -----hH------------------------------------HHHHHHhcCCCCEEEEEEECCCH--H---HHHHHHHH
Confidence 11 33456689999999999984431 1 11122 34
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|...+.. ..+..|+.+++||.|+..
T Consensus 119 ~~~~~~~-~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 119 WTPEVKH-FCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp HHHHHHH-HSTTCCEEEEEECGGGTT
T ss_pred HHHHHHH-hCCCCCEEEEEecHHhhc
Confidence 5444433 235678899999999853
No 221
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.41 E-value=1.7e-13 Score=114.62 Aligned_cols=121 Identities=18% Similarity=0.279 Sum_probs=91.2
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-------------- 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH--------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh--------------
Confidence 4679999999999999999999999999999999998555 6788899999999999988722110
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..+...|++++|++++|||.... .....+.
T Consensus 84 ---------------------------------------------~~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~ 113 (189)
T 1z06_A 84 ---------------------------------------------KSMVQHYYRNVHAVVFVYDMTNM-----ASFHSLP 113 (189)
T ss_dssp ---------------------------------------------TTTHHHHHTTCCEEEEEEETTCH-----HHHHTHH
T ss_pred ---------------------------------------------hhhhHHHhcCCCEEEEEEECcCH-----HHHHHHH
Confidence 13455678999999999985431 1122344
Q ss_pred CcceeeeccC-CCcccccccceeeccC
Q psy9997 160 GWFWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
.|+..+.... ....++.++++|.|+.
T Consensus 114 ~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 114 AWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp HHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 4555554432 5677889999999984
No 222
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.40 E-value=2.4e-13 Score=113.08 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=92.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 72 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF---------------- 72 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH----------------
Confidence 368999999999999999999999999999999987554 678888999999999998862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 73 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 103 (186)
T 2bme_A 73 --------------------------------------------RSVTRSYYRGAAGALLVYDITSR-----ETYNALTN 103 (186)
T ss_dssp --------------------------------------------HHHHHTTSTTCSEEEEEEETTCH-----HHHHTHHH
T ss_pred --------------------------------------------HHHHHHHHhcCCEEEEEEECcCH-----HHHHHHHH
Confidence 23456789999999999985432 12234445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++++|.|+.
T Consensus 104 ~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 104 WLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECcccc
Confidence 6655555555678899999999984
No 223
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.40 E-value=6.2e-13 Score=111.17 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=92.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------- 82 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE------------------- 82 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC-------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH-------------------
Confidence 58999999999999999999999999999999998666 5677889999999999988611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..+++++|++++|||..... ....+..|
T Consensus 83 -----~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 116 (189)
T 2gf9_A 83 -----RY------------------------------------RTITTAYYRGAMGFLLMYDIANQE-----SFAAVQDW 116 (189)
T ss_dssp -----SS------------------------------------CCSGGGGGTTCSEEEEEEETTCHH-----HHHTHHHH
T ss_pred -----HH------------------------------------hhhHHHhccCCCEEEEEEECCCHH-----HHHHHHHH
Confidence 11 234567899999999999854321 12334456
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++++|.|+.
T Consensus 117 ~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 117 ATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCCEEEEEECcccc
Confidence 666655555678899999999984
No 224
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.40 E-value=4.3e-13 Score=129.70 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=47.3
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
+.+|||+|++.|......+++.+|++++|+|+++...-... .++..+.. .++|+++|+||+|+....
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~--~~~~~~~~--~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR--KLMEVTRL--RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH--HHHHHHTT--TTCCEEEEEECTTSCCSC
T ss_pred EEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH--HHHHHHHH--cCCCEEEEEcCcCCcccc
Confidence 45667777777777667788899999999999876432222 22233222 378999999999997653
No 225
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.40 E-value=6.6e-14 Score=126.90 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=65.9
Q ss_pred cccccccccccc-------------cccccCccccCCCEEEEEEEcCChhhH-hhhhhcchhhhhhcCCCCcEEEEEecc
Q psy9997 191 DRSLFDTAGQED-------------YDRLRPLSYPQTDVFLVCFSVVSPSSF-ENVKEKWVPEITHHCQKTPFLLVGTQI 256 (330)
Q Consensus 191 ~~~~~D~~g~e~-------------~~~~~~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~~~~piilV~nK~ 256 (330)
.+.+|||+|... +......+++.+|++++|+|.++.... .... .++..+.. .+.|+++|+||+
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEECT
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcCc
Confidence 467788888653 444555678899999999998543311 1111 23333322 478999999999
Q ss_pred CCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEe---ecc---CCCHHHHHHHHHHHhcC
Q psy9997 257 DLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECS---ALT---QKGLKNVFDEAILAALE 317 (330)
Q Consensus 257 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S---a~~---~~~v~~~f~~l~~~i~~ 317 (330)
|+... .....+.+......++ ..|+++| |.+ +.|++++++.+...+-.
T Consensus 209 Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDK------------GTDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCS------------SCCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ccCCc------------chHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99764 2212222221001111 3466655 455 78899999988776644
No 226
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=115.93 Aligned_cols=120 Identities=20% Similarity=0.328 Sum_probs=92.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||+.+|..+.|...+.+|.++.+...+.+++..+.+.+||+++..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------ 73 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE------------------ 73 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChh------------------
Confidence 46799999999999999999999999999999999998888888999999999999988611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
. + ..++..|++++|++++|||.... .....+..
T Consensus 74 ------~----~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~ 106 (206)
T 2bov_A 74 ------D----Y--------------------------------AAIRDNYFRSGEGFLCVFSITEM-----ESFAATAD 106 (206)
T ss_dssp ------C----C--------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred ------h----h--------------------------------HHHHHHHHhhCCEEEEEEECCCH-----HHHHHHHH
Confidence 1 1 23455678899999999985432 11223345
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 107 FREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 55554443 23577889999999984
No 227
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=113.16 Aligned_cols=120 Identities=18% Similarity=0.354 Sum_probs=94.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++|..+.+...+.++++..+ ...+.+++..+.+.+||+++..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 76 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE------------------- 76 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG-------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH-------------------
Confidence 58999999999999999999999999999999997555 6788899999999999988611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..|++++|++++|||.... .....+..|
T Consensus 77 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 110 (196)
T 3tkl_A 77 -----RF------------------------------------RTITSSYYRGAHGIIVVYDVTDQ-----ESFNNVKQW 110 (196)
T ss_dssp -----GG------------------------------------CTTHHHHHTTCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -----hh------------------------------------hhhHHHHHhhCCEEEEEEECcCH-----HHHHHHHHH
Confidence 11 33456788999999999985432 122344557
Q ss_pred ceeeeccCCCcccccccceeeccCCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
+..+.....+..|+.+++||.|+...
T Consensus 111 ~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 111 LQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHhcCCCCCEEEEEECcccccc
Confidence 66666666677889999999998543
No 228
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.39 E-value=3.7e-13 Score=110.59 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=79.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+++|..+.+...+.++..+.+.+.+.+++..+.+.+||+++.....
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------------- 66 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--------------- 66 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc---------------
Confidence 56899999999999999999999999887665544345567788899999999999887621100
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ . .+...+++++|++++|||.... .+ ...+..
T Consensus 67 -------~---------------------------------~---~~~~~~~~~~~~~i~v~d~~~~--~s---~~~~~~ 98 (175)
T 2nzj_A 67 -------K---------------------------------S---WSQESCLQGGSAYVIVYSIADR--GS---FESASE 98 (175)
T ss_dssp -----------------------------------------C---HHHHHTTTSCSEEEEEEETTCH--HH---HHHHHH
T ss_pred -------h---------------------------------h---hhHHhhcccCCEEEEEEECCCH--HH---HHHHHH
Confidence 0 0 0234578899999999985431 11 122334
Q ss_pred cceeeecc-CCCcccccccceeeccCCC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~ 187 (330)
|...+... ..+..|+.++|||.|+...
T Consensus 99 ~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 99 LRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 44444332 2456788999999999643
No 229
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.39 E-value=4.9e-13 Score=112.10 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=91.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------- 84 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL------------------- 84 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCC-------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCc-------------------
Confidence 368999999999999999999999999999999998665 568888999999999998872
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.++ ..++..+++++|++++|||..... ....+..
T Consensus 85 -----~~~------------------------------------~~~~~~~~~~~d~vi~v~D~~~~~-----s~~~~~~ 118 (193)
T 2oil_A 85 -----ERY------------------------------------RAITSAYYRGAVGALLVFDLTKHQ-----TYAVVER 118 (193)
T ss_dssp -----CTT------------------------------------CTTHHHHHTTCCEEEEEEETTCHH-----HHHTHHH
T ss_pred -----hhh------------------------------------hhhhHHHhccCCEEEEEEECCCHH-----HHHHHHH
Confidence 111 234566789999999999854321 1223445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+........++.++++|.|+.
T Consensus 119 ~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 119 WLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp HHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECCCcc
Confidence 6655555555678899999999984
No 230
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.39 E-value=3.4e-13 Score=114.00 Aligned_cols=120 Identities=17% Similarity=0.264 Sum_probs=93.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 70 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY----------------- 70 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------------
Confidence 58999999999999999999999999999999998655 567888999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 71 -------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~~ 102 (203)
T 1zbd_A 71 -------------------------------------------RTITTAYYRGAMGFILMYDITNE-----ESFNAVQDW 102 (203)
T ss_dssp -------------------------------------------HHHHHTTGGGCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred -------------------------------------------cchHHHhhcCCCEEEEEEECcCH-----HHHHHHHHH
Confidence 23456788999999999985432 112334456
Q ss_pred ceeeeccCCCcccccccceeeccCCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
+..+.....+..|+.++++|.|+...
T Consensus 103 ~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 103 STQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred HHHHHHhcCCCCCEEEEEECcccCcc
Confidence 66665555567889999999999643
No 231
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=2.6e-13 Score=113.95 Aligned_cols=119 Identities=17% Similarity=0.292 Sum_probs=92.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 85 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF---------------- 85 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGG----------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhh----------------
Confidence 479999999999999999999999999989999998666 557778888999999998861111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 86 --------------------------------------------~~~~~~~~~~~d~iilV~d~~~~-----~s~~~~~~ 116 (192)
T 2fg5_A 86 --------------------------------------------HSLAPMYYRGSAAAVIVYDITKQ-----DSFYTLKK 116 (192)
T ss_dssp --------------------------------------------GGGTHHHHTTCSEEEEEEETTCT-----HHHHHHHH
T ss_pred --------------------------------------------HhhhHHhhccCCEEEEEEeCCCH-----HHHHHHHH
Confidence 33456688999999999984432 12234455
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.++++|.|+.
T Consensus 117 ~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 117 WVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECcccc
Confidence 6666655555678899999999984
No 232
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.38 E-value=2.2e-13 Score=110.53 Aligned_cols=120 Identities=27% Similarity=0.336 Sum_probs=92.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||++++..+.+...+.+|+.+.+...+.+++..+.+.+||+++.
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~------------------- 61 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQ------------------- 61 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCc-------------------
Confidence 8899999999999999999999999999999999998888888889999999999988861
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ + ..++..+++++|+++++|+.... .....+..
T Consensus 62 -----~~----~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~ 95 (166)
T 2ce2_X 62 -----EE----Y--------------------------------SAMRDQYMRTGEGFLCVFAINNT-----KSFEDIHQ 95 (166)
T ss_dssp -----SS----C--------------------------------CHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----hh----h--------------------------------hHHHHHhhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 11 1 22345678889999999984421 12233445
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 96 ~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 96 YREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp HHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred HHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 55544332 23467889999999985
No 233
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=3.7e-13 Score=112.66 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=90.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.++..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 77 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERF---------------- 77 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGG----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhh----------------
Confidence 579999999999999999999999999999999997555 668889999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||.... .....+..
T Consensus 78 --------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~ 108 (195)
T 1x3s_A 78 --------------------------------------------RTLTPSYYRGAQGVILVYDVTRR-----DTFVKLDN 108 (195)
T ss_dssp --------------------------------------------CCSHHHHHTTCCEEEEEEETTCH-----HHHHTHHH
T ss_pred --------------------------------------------hhhhHHHhccCCEEEEEEECcCH-----HHHHHHHH
Confidence 23455678999999999985432 11223345
Q ss_pred cceeeeccC-CCcccccccceeeccC
Q psy9997 161 WFWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... ....|+.++++|.|+.
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 555544432 3567889999999983
No 234
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=1.3e-13 Score=128.84 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.0
Q ss_pred EeEEEeecCCCceeEEEEeeccCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
+||+++|.+|||||||++++++..
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999876
No 235
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.38 E-value=4.1e-13 Score=134.02 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=53.0
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
.+.+|||+|+..|......+++.+|++++|+|+++..+++... .|.. +.. .++|+++|+||+|+....
T Consensus 78 ~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~-~~~~-~~~--~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 78 RINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSET-VWRQ-AEK--YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp EEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHH-HHH--TTCCEEEEEECTTSTTCC
T ss_pred EEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHH-HHHH-HHH--cCCCEEEEEECCCcccCC
Confidence 3456777777777777777888999999999999988887776 4543 333 389999999999998653
No 236
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.38 E-value=5.2e-13 Score=108.82 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=90.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------ 65 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE------------------ 65 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGG------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcH------------------
Confidence 478999999999999999999999999999999998555 6788889999999999888611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..+...+++++|++++|||..... ....+..
T Consensus 66 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 98 (168)
T 1z2a_A 66 ------EF------------------------------------DAITKAYYRGAQACVLVFSTTDRE-----SFEAISS 98 (168)
T ss_dssp ------GT------------------------------------TCCCHHHHTTCCEEEEEEETTCHH-----HHHTHHH
T ss_pred ------hH------------------------------------HHHHHHHhcCCCEEEEEEECcCHH-----HHHHHHH
Confidence 11 234566889999999999854321 1223444
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... +..|+.++++|.|+.
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLL 122 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGG
T ss_pred HHHHHHHhC-CCCCEEEEEECcccC
Confidence 555444333 567889999999984
No 237
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.38 E-value=2.4e-13 Score=112.87 Aligned_cols=120 Identities=20% Similarity=0.327 Sum_probs=91.9
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
|+.+||+++|++|||||||++++..+.|...+.+|.++.+...+.+++..+.+.+||+++...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------------- 78 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED----------------- 78 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC-----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc-----------------
Confidence 578999999999999999999999999999999999988888889999999999999887211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ ..++..|++++|++++|||.... .....+..
T Consensus 79 -----------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~ 110 (187)
T 2a9k_A 79 -----------Y--------------------------------AAIRDNYFRSGEGFLCVFSITEM-----ESFAATAD 110 (187)
T ss_dssp -----------C--------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----------c--------------------------------HHHHHHHhccCCEEEEEEECcCH-----HHHHHHHH
Confidence 1 23455678899999999985432 11223344
Q ss_pred cceeeecc-CCCcccccccceeeccC
Q psy9997 161 WFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
|+..+... .....|+.+++||.|+.
T Consensus 111 ~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 111 FREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp HHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEECcccc
Confidence 55544443 23467889999999984
No 238
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.38 E-value=3.6e-13 Score=112.12 Aligned_cols=119 Identities=25% Similarity=0.308 Sum_probs=92.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+++||+++|++|||||||++++..+.+...+.+|..+.+...+.+++..+.+.+||+++...+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 65 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY----------------- 65 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHH-----------------
Confidence 479999999999999999999999999999999998888888999999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..|++++|++++|||.... .....+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 97 (189)
T 4dsu_A 66 -------------------------------------------SAMRDQYMRTGEGFLCVFAINNT-----KSFEDIHHY 97 (189)
T ss_dssp -------------------------------------------CTTHHHHHHHCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456678899999999985432 112234445
Q ss_pred ceeeec-cCCCcccccccceeeccC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~ 185 (330)
...+.. ...+..|+.+++||.|+.
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred HHHHHHhcCCCCCcEEEEEECccCc
Confidence 554444 344678899999999985
No 239
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=115.54 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=81.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 87 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF---------------- 87 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHH----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhH----------------
Confidence 468999999999999999999999999999999997555 668888999999999988862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 88 --------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 118 (200)
T 2o52_A 88 --------------------------------------------RSVTRSYYRGAAGALLVYDITSRE-----TYNSLAA 118 (200)
T ss_dssp --------------------------------------------SCCCHHHHTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------HHHHHHHhccCCEEEEEEECcCHH-----HHHHHHH
Confidence 223556789999999999854321 2234456
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.+++||.|+.
T Consensus 119 ~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 119 WLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp HHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcc
Confidence 6666655555778899999999984
No 240
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.37 E-value=5.8e-13 Score=108.55 Aligned_cols=119 Identities=12% Similarity=0.103 Sum_probs=72.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|....+. ...++.+..+.+.+.+++..+.+.+||+++....
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------------- 62 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG----------------- 62 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC----------------------
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccc-----------------
Confidence 4689999999999999999999866553 4567777778888899999999999988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..|++++|++++|||.... .....+..|
T Consensus 63 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~~~ 94 (166)
T 3q72_A 63 -------------------------------------------RWLPGHCMAMGDAYVIVYSVTDK-----GSFEKASEL 94 (166)
T ss_dssp -----------------------------------------------------CCEEEEEEETTCH-----HHHHHHHHH
T ss_pred -------------------------------------------hhhhhhhhhhCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33456788999999999984432 122344455
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 95 ~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 95 RVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp HHHHHHCC---CCCEEEEEECTTCCS
T ss_pred HHHHHHhcCCCCCCEEEEEecccccc
Confidence 5544432 346788999999999864
No 241
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.37 E-value=4.5e-13 Score=110.41 Aligned_cols=119 Identities=23% Similarity=0.302 Sum_probs=86.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------------- 69 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF---------------- 69 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG----------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh----------------
Confidence 468999999999999999999999999999999998655 678889999999999998862111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 70 --------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~-----s~~~~~~ 100 (177)
T 1wms_A 70 --------------------------------------------RSLRTPFYRGSDCCLLTFSVDDSQ-----SFQNLSN 100 (177)
T ss_dssp --------------------------------------------HHHHGGGGTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------hhhHHHHHhcCCEEEEEEECcCHH-----HHHHHHH
Confidence 334567899999999999854321 1223344
Q ss_pred cceeeeccC----CCcccccccceeeccC
Q psy9997 161 WFWFISTEH----SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++++|.|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 101 WKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp HHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HHHHHHHHccccccCCCcEEEEEECCccc
Confidence 554443322 2667889999999984
No 242
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.37 E-value=4.1e-13 Score=110.66 Aligned_cols=118 Identities=19% Similarity=0.321 Sum_probs=92.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------------------- 75 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE------------------- 75 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG-------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh-------------------
Confidence 68999999999999999999999999999999998655 6688889999999999988611
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..+++++|++++|||.... .....+..|
T Consensus 76 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 109 (179)
T 1z0f_A 76 -----RF------------------------------------RAVTRSYYRGAAGALMVYDITRR-----STYNHLSSW 109 (179)
T ss_dssp -----GT------------------------------------CHHHHHHHHTCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -----Hh------------------------------------hhhHHHHhccCCEEEEEEeCcCH-----HHHHHHHHH
Confidence 11 23355678899999999985432 122344566
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++++|.|+.
T Consensus 110 ~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 110 LTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCcEEEEEECcccc
Confidence 666655555678899999999984
No 243
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.37 E-value=2.8e-13 Score=110.65 Aligned_cols=118 Identities=19% Similarity=0.380 Sum_probs=84.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||++++..+.|...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------------------ 63 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE------------------ 63 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGG------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCCh------------------
Confidence 468999999999999999999999999999999998655 5677888889999999888611
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
.+ ..++..+++++|++++|||..... ....+..
T Consensus 64 ------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 96 (170)
T 1g16_A 64 ------RF------------------------------------RTITTAYYRGAMGIILVYDITDER-----TFTNIKQ 96 (170)
T ss_dssp ------GT------------------------------------SCCCHHHHTTEEEEEEEEETTCHH-----HHHTHHH
T ss_pred ------hh------------------------------------hhhHHHHhccCCEEEEEEECCCHH-----HHHHHHH
Confidence 11 233556789999999999854321 1233445
Q ss_pred cceeeeccCCCcccccccceeecc
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
|+..+.....+..|+.++++|.|+
T Consensus 97 ~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 97 WFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTC
T ss_pred HHHHHHHhcCCCCcEEEEEECccC
Confidence 666655555567889999999998
No 244
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.36 E-value=2.5e-13 Score=114.72 Aligned_cols=119 Identities=19% Similarity=0.305 Sum_probs=80.4
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~------------------- 87 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ------------------- 87 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTC-------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCC-------------------
Confidence 468999999999999999999999999999999998655 678889999999999998871
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
++ + ..++..+++++|++++|||..... ....+..
T Consensus 88 -----~~----~--------------------------------~~~~~~~~~~~d~iilv~d~~~~~-----s~~~~~~ 121 (199)
T 2p5s_A 88 -----ER----F--------------------------------RSIAKSYFRKADGVLLLYDVTCEK-----SFLNIRE 121 (199)
T ss_dssp -----TT----C--------------------------------HHHHHHHHHHCSEEEEEEETTCHH-----HHHTHHH
T ss_pred -----cc----h--------------------------------hhhHHHHHhhCCEEEEEEECCChH-----HHHHHHH
Confidence 11 1 234556788999999999854321 1223345
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+.....+..|+.+++||.|+.
T Consensus 122 ~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 122 WVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccc
Confidence 6655554445678899999999983
No 245
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.36 E-value=1.7e-13 Score=113.09 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=87.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECC-EEEEEEEeecCCceeEeEEEeecCCCceeE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGG-EPYTLGLNFARTMQTIKCVVVGDGAVGKTC 78 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ki~vvG~~~~GKTs 78 (330)
++.+||+++|++|||||||+.+|..+.|...+.||++ +.+...+.+++ ..+.+.+||+++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~----------------- 66 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ----------------- 66 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC-----------------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC-----------------
Confidence 4689999999999999999999999999888889996 45577888876 7899999998871
Q ss_pred EEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 79 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
..+ ..++..|++++|++++|||..... ....+
T Consensus 67 -------~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~ 98 (178)
T 2hxs_A 67 -------TIG------------------------------------GKMLDKYIYGAQGVLLVYDITNYQ-----SFENL 98 (178)
T ss_dssp -------CTT------------------------------------CTTHHHHHTTCSEEEEEEETTCHH-----HHHTH
T ss_pred -------ccc------------------------------------cchhhHHHhhCCEEEEEEECCCHH-----HHHHH
Confidence 111 334566789999999999854321 12233
Q ss_pred CCcceeeeccC--CCccc-ccccceeeccC
Q psy9997 159 GGWFWFISTEH--SPPMK-LHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~~~--~~~~~-~~~~g~~~~~~ 185 (330)
..|+..+.... ....+ +.+++||.|+.
T Consensus 99 ~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 99 EDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 44554443321 11334 68899999984
No 246
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.35 E-value=1.4e-13 Score=116.19 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=84.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||+.+|....+...+.++. .+.+...+.+++..+.+.+||+++....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---------------- 85 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---------------- 85 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG----------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc----------------
Confidence 46899999999999999999997554443444444 4666778889999999999988762110
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..+ ++..||+++|++++|||.... .....+..
T Consensus 86 -----------------------------------------~~~--~~~~~~~~~d~~ilv~d~~~~-----~s~~~~~~ 117 (195)
T 3cbq_A 86 -----------------------------------------GGW--LRDHCLQTGDAFLIVFSVTDR-----RSFSKVPE 117 (195)
T ss_dssp -----------------------------------------GHH--HHHHHHHHCSEEEEEEETTCH-----HHHHTHHH
T ss_pred -----------------------------------------hhh--hHHHhhccCCEEEEEEECCCH-----HHHHHHHH
Confidence 000 234578899999999985431 11223445
Q ss_pred cceeeeccC-CCcccccccceeeccCCC
Q psy9997 161 WFWFISTEH-SPPMKLHTLGFITNINPG 187 (330)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 187 (330)
|+..+.... ....|+.++|+|.|+...
T Consensus 118 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 118 TLLRLRAGRPHHDLPVILVGNKSDLARS 145 (195)
T ss_dssp HHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCCEEEEeechhcccc
Confidence 665554432 357888999999999643
No 247
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.35 E-value=2.8e-14 Score=131.74 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=54.5
Q ss_pred cccccCccccCCCEEEEEEEcCChhhHhhhhh-cchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHH
Q psy9997 203 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE-KWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG 281 (330)
Q Consensus 203 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 281 (330)
+..+...++.+++.+++++...+. .+..... .++..+.. .+.|+++|+||+|+.... ....+..
T Consensus 156 ~~~~~~~~~~~~~~iiL~v~~a~~-~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~------------~~~~~~~ 220 (353)
T 2x2e_A 156 IRDMLMQFVTKENCLILAVSPANS-DLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEG------------TDARDVL 220 (353)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTS-CGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTT------------CCCHHHH
T ss_pred HHHHHHHHHcCCCeEEEEEecCCC-ccchhHHHHHHHHhCc--CCCceEEEeccccccCcc------------hhHHHHH
Confidence 344555566677766665543322 2332210 13333322 478999999999997541 1111111
Q ss_pred HH--HHHHhCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 282 EK--LAKELKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 282 ~~--~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
+. +....+..+++++||+++.|++++++.+..
T Consensus 221 ~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 221 ENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred hCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 10 001122246788999999999999998876
No 248
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.8e-13 Score=115.01 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=84.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
..+||+++|++|||||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------------- 88 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---------------- 88 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH----------------
Confidence 368999999999999999999999999999999997444 678888999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 89 --------------------------------------------~~~~~~~~~~~d~iilV~D~~~~~-----s~~~~~~ 119 (192)
T 2il1_A 89 --------------------------------------------NSITSAYYRSAKGIILVYDITKKE-----TFDDLPK 119 (192)
T ss_dssp --------------------------------------------HHHHHHHHHHCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------HHHHHHHhcCCCEEEEEEECcCHH-----HHHHHHH
Confidence 223456788999999999854321 1223445
Q ss_pred cceeeeccCCCcccccccceeeccC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
|+..+........++.+++||.|+.
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECcccc
Confidence 6655555555678899999999984
No 249
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=107.95 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=87.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.++..+.+...+.+|++..+ ...+.+++..+.+.+||+++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------------------- 69 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE------------------- 69 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG-------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch-------------------
Confidence 58999999999999999999999999999999997555 6788899999999999988711
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ..++..+++++|++++|||.... .....+..|
T Consensus 70 -----~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 103 (181)
T 3tw8_B 70 -----RF------------------------------------RTITSTYYRGTHGVIVVYDVTSA-----ESFVNVKRW 103 (181)
T ss_dssp -----GC------------------------------------SSCCGGGGTTCSEEEEEEETTCH-----HHHHHHHHH
T ss_pred -----hh------------------------------------hhhHHHHhccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 11 33466789999999999985432 122234456
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.. ..+..|+.+++||.|+.
T Consensus 104 ~~~~~~-~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 104 LHEINQ-NCDDVCRILVGNKNDDP 126 (181)
T ss_dssp HHHHHH-HCTTSEEEEEEECTTCG
T ss_pred HHHHHH-hCCCCCEEEEEECCCCc
Confidence 555433 33577889999999984
No 250
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.34 E-value=9.5e-13 Score=111.94 Aligned_cols=118 Identities=19% Similarity=0.360 Sum_probs=91.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------- 82 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF---------------- 82 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHH----------------
Confidence 368999999999999999999999999999999998665 568889999999999998872111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..+++++|++++|||..... ....+..
T Consensus 83 --------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~ 113 (213)
T 3cph_A 83 --------------------------------------------RTITTAYYRGAMGIILVYDVTDER-----TFTNIKQ 113 (213)
T ss_dssp --------------------------------------------TCCCHHHHTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred --------------------------------------------HHHHHHHhccCCEEEEEEECCCHH-----HHHHHHH
Confidence 233556789999999999854321 1233445
Q ss_pred cceeeeccCCCcccccccceeecc
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
|+..+........|+.++++|.|+
T Consensus 114 ~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 114 WFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp HHHHHHHHTTTCSEEEEEEECTTC
T ss_pred HHHHHHHhcCCCCCEEEEEECCCC
Confidence 666655555567889999999998
No 251
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.34 E-value=8.8e-13 Score=111.62 Aligned_cols=119 Identities=21% Similarity=0.326 Sum_probs=88.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------------- 69 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER----------------- 69 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH-----------------
Confidence 478999999999999999999999999999999997444 66788888899999999886111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ ..++..+++++|++++|||..... ....+..
T Consensus 70 -------~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~ 101 (207)
T 1vg8_A 70 -------F------------------------------------QSLGVAFYRGADCCVLVFDVTAPN-----TFKTLDS 101 (207)
T ss_dssp -------G------------------------------------SCSCCGGGTTCSEEEEEEETTCHH-----HHHTHHH
T ss_pred -------H------------------------------------HHhHHHHHhCCcEEEEEEECCCHH-----HHHHHHH
Confidence 1 234567889999999999854321 1223334
Q ss_pred cceeeeccC----CCcccccccceeeccC
Q psy9997 161 WFWFISTEH----SPPMKLHTLGFITNIN 185 (330)
Q Consensus 161 ~~~~~~~~~----~~~~~~~~~g~~~~~~ 185 (330)
|+..+.... .+..|+.++++|.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 102 WRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp HHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 544443322 2467889999999984
No 252
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.34 E-value=7.9e-13 Score=109.22 Aligned_cols=119 Identities=17% Similarity=0.260 Sum_probs=81.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccc-eeEEEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.+||+++|++|||||||+.++..+.|...+.+|++.. +...+.++ +..+.+.+||+++...+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------------- 71 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF--------------- 71 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh---------------
Confidence 47899999999999999999999999999999999644 46677776 66788999988762111
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
..+...+++++|++++|||..... ....+.
T Consensus 72 ---------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~ 101 (182)
T 1ky3_A 72 ---------------------------------------------QSLGVAFYRGADCCVLVYDVTNAS-----SFENIK 101 (182)
T ss_dssp --------------------------------------------------CCSTTCCEEEEEEETTCHH-----HHHTHH
T ss_pred ---------------------------------------------hhhhHHHhhcCCEEEEEEECCChH-----HHHHHH
Confidence 234556889999999999854321 222344
Q ss_pred Ccceeeecc----CCCcccccccceeeccC
Q psy9997 160 GWFWFISTE----HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~----~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+... ..+..|+.++++|.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 555444332 23677889999999984
No 253
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=5.6e-13 Score=108.99 Aligned_cols=120 Identities=19% Similarity=0.336 Sum_probs=89.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||++++..+.|...+.+|++..+...+..++..+.+.+||+++...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~------------------ 63 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ------------------ 63 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSS------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchh------------------
Confidence 47899999999999999999999999999999999888888888899999999999887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..++..+++++|++++|||.... .....+..|
T Consensus 64 ----------~--------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~~~ 96 (172)
T 2erx_A 64 ----------F--------------------------------PAMQRLSISKGHAFILVYSITSR-----QSLEELKPI 96 (172)
T ss_dssp ----------C--------------------------------HHHHHHHHHHCSEEEEEEETTCH-----HHHHTTHHH
T ss_pred ----------h--------------------------------HHHHHHhcccCCEEEEEEECcCH-----HHHHHHHHH
Confidence 1 23345578889999999985421 112233444
Q ss_pred ceeeecc--CCCcccccccceeeccCC
Q psy9997 162 FWFISTE--HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~--~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++++|.|+..
T Consensus 97 ~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 97 YEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 4433332 235678899999999853
No 254
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.34 E-value=1.3e-13 Score=116.68 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=61.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC--CCCCCCCCCcc-cceeEEEEECCE--EEEEEEeecCCceeEeEEEeecCCCce
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVF-DNYAVTVMIGGE--PYTLGLNFARTMQTIKCVVVGDGAVGK 76 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~--~f~~~~~~tv~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~ki~vvG~~~~GK 76 (330)
+.+||+++|++|||||||+.+|..+ .|...+.+|++ +.+...+.+++. .+.+.+||+++...+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------ 86 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY------------ 86 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH------------
Confidence 4689999999999999999999999 89999999997 556778888887 899999998873211
Q ss_pred eEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccc
Q psy9997 77 TCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNR 156 (330)
Q Consensus 77 Tsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 156 (330)
..++..+++++|++++|||..... ...
T Consensus 87 ------------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~ 113 (208)
T 2yc2_C 87 ------------------------------------------------KEQISQYWNGVYYAILVFDVSSME-----SFE 113 (208)
T ss_dssp ------------------------------------------------HHHHSTTCCCCCEEEEEEETTCHH-----HHH
T ss_pred ------------------------------------------------HHHHHHHHhhCcEEEEEEECCCHH-----HHH
Confidence 234667899999999999854321 223
Q ss_pred ccCCcceeeeccCC---CcccccccceeeccCC
Q psy9997 157 KLGGWFWFISTEHS---PPMKLHTLGFITNINP 186 (330)
Q Consensus 157 ~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~ 186 (330)
.+..|+..+..... ...|+.+++||.|+..
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 114 SCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 44566666655444 6788999999999853
No 255
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=2.4e-12 Score=118.22 Aligned_cols=59 Identities=31% Similarity=0.399 Sum_probs=37.5
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCC-CCCCC-ceeecceEEEEECCc---------------eeeeeeeecCCCcc
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVP-TVFDNYAVTVMIGGE---------------PYTLGLFDTAGQED 123 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~ 123 (330)
+||+++|.+|||||||++++++..+. ..|+. |+..... .+.+.+. +..+++|||||+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 68999999999999999999987742 23322 3333332 2334432 24677888888744
No 256
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.34 E-value=3e-13 Score=114.21 Aligned_cols=121 Identities=17% Similarity=0.342 Sum_probs=88.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++|..+.|...+.+|++..+ ...+.+++..+.+.+||+++
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--------------------- 91 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG--------------------- 91 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTT---------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCC---------------------
Confidence 58999999999999999999999999888888887555 67888999999999999886
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
...+ ..++..+++++|++++|||.... .....+..|
T Consensus 92 ---~~~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 127 (199)
T 3l0i_B 92 ---QERF------------------------------------RTITSSYYRGAHGIIVVYDVTDQ-----ESFNNVKQW 127 (199)
T ss_dssp ---CTTC------------------------------------CCCSCC--CCCSEEEECC-CCCS-----HHHHHHHHH
T ss_pred ---cHhH------------------------------------HHHHHHHhhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 1111 34466789999999999985431 122334456
Q ss_pred ceeeeccCCCcccccccceeeccCCCc
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINPGW 188 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~~~ 188 (330)
+..+........++.+++||.|+...+
T Consensus 128 ~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 128 LQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp HHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred HHHHHHhccCCCCEEEEEECccCCccc
Confidence 666655555678899999999986543
No 257
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.33 E-value=2.7e-12 Score=128.26 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=52.3
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
..+.+|||+|+..|......+++.+|++++|+|+++....+... .|. .+.. .++|+++|+||+|+...
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~-~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWR-QANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHH-HHHH--cCCCEEEEEeCCCcccc
Confidence 44567788887888777777889999999999999877666554 443 2322 37999999999999764
No 258
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=5.9e-13 Score=112.01 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=90.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+...+.+++..+.+.+||+++...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------------ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED------------------ 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc------------------
Confidence 57999999999999999999999999999999999988888889999999999999887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
. .++..+++++|++++|||.... .....+..|
T Consensus 89 ---------~----------------------------------~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~~~ 120 (196)
T 2atv_A 89 ---------T----------------------------------IQREGHMRWGEGFVLVYDITDR-----GSFEEVLPL 120 (196)
T ss_dssp ---------C----------------------------------HHHHHHHHHCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred ---------c----------------------------------cchhhhhccCCEEEEEEECcCH-----HHHHHHHHH
Confidence 0 0134567889999999985431 112234445
Q ss_pred ceeeecc-CCCcccccccceeeccC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+..+... ..+..|+.++++|.|+.
T Consensus 121 ~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 121 KNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp HHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred HHHHHHhhCCCCCcEEEEEECcccc
Confidence 5544442 34577899999999984
No 259
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.00 E-value=1.3e-13 Score=116.87 Aligned_cols=119 Identities=52% Similarity=0.893 Sum_probs=90.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++..++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------------- 91 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY----------------- 91 (204)
Confidence 468999999999999999999999999999999999888888888899999999988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC-C
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG-G 160 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-~ 160 (330)
..++..+++++|++++|||.... .....+. .
T Consensus 92 -------------------------------------------~~~~~~~~~~~d~iilv~D~~~~-----~s~~~~~~~ 123 (204)
T 3th5_A 92 -------------------------------------------DRLRPLSYPQTDVFLICFSLVSP-----ASFENVRAK 123 (204)
Confidence 23455678999999999984321 1112232 5
Q ss_pred cceeeeccCCCcccccccceeeccCC
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... .+..|+.+++||.|+..
T Consensus 124 ~~~~l~~~-~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 124 WYPEVRHH-CPNTPIILVGTKLDLRD 148 (204)
Confidence 55544432 23778899999999854
No 260
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=1.3e-13 Score=115.65 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=92.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+ ...+.+++..+.+.+||+++...+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------------- 85 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY----------------- 85 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-----------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-----------------
Confidence 68999999999999999999999999999999997555 668888888999999988862111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .+ ...+..|
T Consensus 86 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 117 (191)
T 3dz8_A 86 -------------------------------------------RTITTAYYRGAMGFILMYDITNE--ES---FNAVQDW 117 (191)
T ss_dssp -------------------------------------------HHHHHHHHTTCCEEEEEEETTCH--HH---HHTHHHH
T ss_pred -------------------------------------------HHHHHHHHccCCEEEEEEECcCH--HH---HHHHHHH
Confidence 33456688999999999985431 12 2344557
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+.....+..|+.++|+|.|+.
T Consensus 118 ~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 118 ATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCCEEEEEECCCCc
Confidence 766666566788899999999984
No 261
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.32 E-value=1e-12 Score=109.64 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=87.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccccee--EEEEECCE---------EEEEEEeecCCceeEeEEEeec
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA--VTVMIGGE---------PYTLGLNFARTMQTIKCVVVGD 71 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~ki~vvG~ 71 (330)
.+||+++|++|||||||+.+|..+.|...+.+|++..+. +.+.+++. .+.+.+||+++...+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------- 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------- 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------
Confidence 589999999999999999999999999999999986664 46666665 788899988762111
Q ss_pred CCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhh
Q psy9997 72 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRS 151 (330)
Q Consensus 72 ~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~ 151 (330)
..+...+++++|++++|||....
T Consensus 84 -----------------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~---- 106 (195)
T 3bc1_A 84 -----------------------------------------------------RSLTTAFFRDAMGFLLLFDLTNE---- 106 (195)
T ss_dssp -----------------------------------------------------HHHHHHTTTTCSEEEEEEETTCH----
T ss_pred -----------------------------------------------------HHHHHHHHcCCCEEEEEEECCCH----
Confidence 23456688999999999985432
Q ss_pred cccccccCCcceeeeccCC-CcccccccceeeccC
Q psy9997 152 VDWNRKLGGWFWFISTEHS-PPMKLHTLGFITNIN 185 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 185 (330)
.....+..|+..+..... +..|+.+++||.|+.
T Consensus 107 -~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 107 -QSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp -HHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred -HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 112233456655544333 678899999999984
No 262
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.31 E-value=5.4e-13 Score=114.49 Aligned_cols=120 Identities=21% Similarity=0.262 Sum_probs=91.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+||+++|++|||||||+.+|+.+.|...+.+|++..+ .....+++..+.+.+||+++.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~------------------ 74 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ------------------ 74 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh------------------
Confidence 3579999999999999999999999999998999997444 667888999999999998871
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
+.+ ..++..+++++|++++|||.... .....+.
T Consensus 75 ------~~~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~-----~s~~~~~ 107 (221)
T 3gj0_A 75 ------EKF------------------------------------GGLRDGYYIQAQCAIIMFDVTSR-----VTYKNVP 107 (221)
T ss_dssp ------GGT------------------------------------SCCCHHHHTTCCEEEEEEETTCH-----HHHHTHH
T ss_pred ------HHH------------------------------------hHHHHHHHhcCCEEEEEEECCCH-----HHHHHHH
Confidence 111 33466789999999999985432 1122333
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+... .+..|+.++|||.|+..
T Consensus 108 ~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 108 NWHRDLVRV-CENIPIVLCGNKVDIKD 133 (221)
T ss_dssp HHHHHHHHH-STTCCEEEEEECTTSSS
T ss_pred HHHHHHHHh-CCCCCEEEEEECCcccc
Confidence 455555443 24678899999999854
No 263
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.31 E-value=9.3e-13 Score=107.62 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=78.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+|....+...+.++. .+.+...+.+++..+.+.+||+++.....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------------- 65 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------------- 65 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc----------------
Confidence 4899999999999999999999887776666555 45567788899999999999887622110
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 66 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~ 97 (169)
T 3q85_A 66 -------------------------------------------GWLQDHCLQTGDAFLIVFSVTDR-----RSFSKVPET 97 (169)
T ss_dssp -----------------------------------------------CHHHHHCSEEEEEEETTCH-----HHHHTHHHH
T ss_pred -------------------------------------------hhhhhhhhccCCEEEEEEECCCh-----HHHHHHHHH
Confidence 11344567889999999984431 223344556
Q ss_pred ceeeeccC-CCcccccccceeeccC
Q psy9997 162 FWFISTEH-SPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~g~~~~~~ 185 (330)
+..+.... .+..|+.++|+|.|+.
T Consensus 98 ~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 98 LLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp HHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred HHHHHhcccCCCCCEEEEeeCcchh
Confidence 65554433 3578899999999985
No 264
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.31 E-value=1.6e-12 Score=109.82 Aligned_cols=116 Identities=17% Similarity=0.108 Sum_probs=78.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|. .+.||++.. ...+.+++ +.+.+||+++...+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~----------------- 82 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQA----------------- 82 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC---------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhh-----------------
Confidence 5789999999999999999999998874 578888755 45667777 78899998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..||+++|++++|||.... ........|
T Consensus 83 -------------------------------------------~~~~~~~~~~~d~~i~v~D~~~~-----~s~~~~~~~ 114 (198)
T 1f6b_A 83 -------------------------------------------RRVWKNYLPAINGIVFLVDCADH-----ERLLESKEE 114 (198)
T ss_dssp -------------------------------------------CCGGGGGGGGCSEEEEEEETTCG-----GGHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHHH
Confidence 33566789999999999985432 112233345
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 115 ~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 115 LDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHhCcccCCCcEEEEEECCCccc
Confidence 4444332 335678899999999853
No 265
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.28 E-value=1.2e-11 Score=111.50 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=78.9
Q ss_pred cccccccCccccCCCEEEEEEEcCChh-hHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcC-H
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPS-SFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPIS-F 278 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~-~ 278 (330)
+++..+.+.+++++|++++|||++++. +++.+. .|+..+.. .++|+++|+||+|+..+ +.+. .
T Consensus 67 er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~-~~l~~~~~--~~~~~ilV~NK~DL~~~------------~~v~~~ 131 (302)
T 2yv5_A 67 ERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLD-NMLVVYEY--FKVEPVIVFNKIDLLNE------------EEKKEL 131 (302)
T ss_dssp CCSCEEETTEEESCCEEEEEECSTTTTCCHHHHH-HHHHHHHH--TTCEEEEEECCGGGCCH------------HHHHHH
T ss_pred ChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHH-HHHHHHHh--CCCCEEEEEEcccCCCc------------cccHHH
Confidence 777777888999999999999999996 888887 89887765 58999999999999753 2222 4
Q ss_pred HHHHHHHHHhCCeeEEEEeeccCCCHHHHHHHHH
Q psy9997 279 EQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312 (330)
Q Consensus 279 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 312 (330)
+++.++++..+ .+++++||++|.|++++|..+.
T Consensus 132 ~~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 132 ERWISIYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 55667777777 6899999999999999998654
No 266
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=1.6e-12 Score=109.31 Aligned_cols=119 Identities=21% Similarity=0.367 Sum_probs=88.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+...+.+++..+.+.+||+++...+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------------- 69 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF----------------- 69 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSC-----------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHh-----------------
Confidence 368999999999999999999999999999999999888888888999999999998872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .+ ...+..|
T Consensus 70 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~--~s---~~~~~~~ 101 (199)
T 2gf0_A 70 -------------------------------------------PAMQRLSISKGHAFILVFSVTSK--QS---LEELGPI 101 (199)
T ss_dssp -------------------------------------------HHHHHHHHHHCSEEEEEEETTCH--HH---HHTTHHH
T ss_pred -------------------------------------------HHHHHHhhccCCEEEEEEECcCH--HH---HHHHHHH
Confidence 23445678889999999985431 11 1223334
Q ss_pred ceeeecc--CCCcccccccceeeccC
Q psy9997 162 FWFISTE--HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~--~~~~~~~~~~g~~~~~~ 185 (330)
+..+... ..+..|+.+++||.|+.
T Consensus 102 ~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 102 YKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp HHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred HHHHHHHhcCCCCCCEEEEEECccCC
Confidence 3333221 13467889999999984
No 267
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.28 E-value=6.5e-13 Score=113.53 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=87.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCE----------EEEEEEeecCCceeEeEEEee
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGE----------PYTLGLNFARTMQTIKCVVVG 70 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~ki~vvG 70 (330)
+.+||+++|++|||||||+++|..+.|...+.+|++..+ .+.+.+++. .+.+.+||+++...+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~------ 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF------ 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH------
Confidence 368999999999999999999999999888889987555 556777766 788889988762111
Q ss_pred cCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhh
Q psy9997 71 DGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRR 150 (330)
Q Consensus 71 ~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~ 150 (330)
..++..+++++|++++|||....
T Consensus 98 ------------------------------------------------------~~~~~~~~~~~d~iilV~D~~~~--- 120 (217)
T 2f7s_A 98 ------------------------------------------------------RSLTTAFFRDAMGFLLMFDLTSQ--- 120 (217)
T ss_dssp ------------------------------------------------------HHHHHHHHTTCCEEEEEEETTCH---
T ss_pred ------------------------------------------------------HhHHHHHhcCCCEEEEEEECcCH---
Confidence 22345678999999999985432
Q ss_pred hcccccccCCcceeeeccCC-CcccccccceeeccC
Q psy9997 151 SVDWNRKLGGWFWFISTEHS-PPMKLHTLGFITNIN 185 (330)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 185 (330)
.....+..|+..+..... ...|+.++++|.|+.
T Consensus 121 --~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 121 --QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp --HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred --HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 112234456655544433 678899999999984
No 268
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.28 E-value=3.6e-13 Score=112.33 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=73.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC--CCCCCCCCCcccce-eEEEEE---CCEEEEEEEeecCCceeEeEEEeecCCCce
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNY-AVTVMI---GGEPYTLGLNFARTMQTIKCVVVGDGAVGK 76 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~--~f~~~~~~tv~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~ki~vvG~~~~GK 76 (330)
.+||+++|++|||||||+.+|+.. .|...+.+|++..+ ...+.+ ++..+.+.+||+++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------ 69 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF------------ 69 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH------------
Confidence 589999999999999999999984 67778899987555 334443 346778899988872221
Q ss_pred eEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccc
Q psy9997 77 TCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNR 156 (330)
Q Consensus 77 Tsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 156 (330)
..+++.|+++++++++|||.+.. .....
T Consensus 70 ------------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~----~~s~~ 97 (184)
T 2zej_A 70 ------------------------------------------------YSTHPHFMTQRALYLAVYDLSKG----QAEVD 97 (184)
T ss_dssp ------------------------------------------------HTTSHHHHHHSEEEEEEEEGGGC----HHHHH
T ss_pred ------------------------------------------------HHhhHHHccCCcEEEEEEeCCcc----hhHHH
Confidence 23456678889999999984332 11123
Q ss_pred ccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 157 KLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+..|+..+... .+..|+.++|||.|+..
T Consensus 98 ~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 98 AMKPWLFNIKAR-ASSSPVILVGTHLDVSD 126 (184)
T ss_dssp THHHHHHHHHHH-CTTCEEEEEEECGGGCC
T ss_pred HHHHHHHHHHhh-CCCCcEEEEEECCCccc
Confidence 455666554332 24678899999999854
No 269
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.27 E-value=3.9e-12 Score=126.97 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=50.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
+.+|||+|+..|......+++.+|++++|+|.++..+++... .|. .+.. .++|+++|+||+|+...
T Consensus 77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~-~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWR-QATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHH-HHHH--TTCCEEEEEECTTSTTC
T ss_pred EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHH-HHHH--cCCCEEEEEECCCcccc
Confidence 445666666777666677788899999999999988877765 443 3443 37999999999999865
No 270
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.26 E-value=9.4e-12 Score=104.28 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=81.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++.. ...+.+++ +.+.+||+++....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~----------------- 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQA----------------- 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGG-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHH-----------------
Confidence 4689999999999999999999999885 577888754 45667776 77889988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..|++++|++++|||..... .......|
T Consensus 81 -------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~~ 112 (190)
T 1m2o_B 81 -------------------------------------------RRLWKDYFPEVNGIVFLVDAADPE-----RFDEARVE 112 (190)
T ss_dssp -------------------------------------------TTSGGGGCTTCCEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhcCCEEEEEEECCChH-----HHHHHHHH
Confidence 334567899999999999855321 12233344
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.++|||.|+..
T Consensus 113 ~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 113 LDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHcchhhcCCCEEEEEECCCCcC
Confidence 4433322 235678899999999854
No 271
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.26 E-value=8.7e-12 Score=104.62 Aligned_cols=118 Identities=16% Similarity=0.298 Sum_probs=87.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||++++....+...+.||++..+ ...+.+++..+.+++|++++..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~------------------ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER------------------ 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc------------------
Confidence 58999999999999999999999999999999998665 67889999999999998776211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..+...++++++++++|||...... ...+..|
T Consensus 91 ------~------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~ 123 (191)
T 1oix_A 91 ------Y------------------------------------RAITSAYYRGAVGALLVYDIAKHLT-----YENVERW 123 (191)
T ss_dssp ------S------------------------------------SCCCHHHHTTCCEEEEEEETTCHHH-----HHTHHHH
T ss_pred ------h------------------------------------hhhhHHHhhcCCEEEEEEECcCHHH-----HHHHHHH
Confidence 1 2234567888999999998553211 1122334
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++..+++|.|+.
T Consensus 124 ~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 124 LKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHhcCCCCcEEEEEECcccc
Confidence 433333333466788899999984
No 272
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.26 E-value=2.6e-12 Score=107.92 Aligned_cols=117 Identities=11% Similarity=0.023 Sum_probs=80.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC-CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS-EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~-~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
...||+++|++|||||||+.+|..+.|.. .+.+|++.... . ++...+.+.+||+++...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~----------------- 75 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-T--FEKGRVAFTVFDMGGAKK----------------- 75 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-E--EEETTEEEEEEEECCSGG-----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-E--EEeCCEEEEEEECCCCHh-----------------
Confidence 46899999999999999999999999999 89999873332 2 335567789998887211
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+ ..++..|++++|++++|||.... .....+..
T Consensus 76 -----------~--------------------------------~~~~~~~~~~~d~ii~v~D~~~~-----~s~~~~~~ 107 (199)
T 4bas_A 76 -----------F--------------------------------RGLWETYYDNIDAVIFVVDSSDH-----LRLCVVKS 107 (199)
T ss_dssp -----------G--------------------------------GGGGGGGCTTCSEEEEEEETTCG-----GGHHHHHH
T ss_pred -----------H--------------------------------HHHHHHHHhcCCEEEEEEECCcH-----HHHHHHHH
Confidence 1 34566789999999999985532 11223334
Q ss_pred cceeeecc--------CCCcccccccceeeccCC
Q psy9997 161 WFWFISTE--------HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~--------~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+... ..+..++.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 108 EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred HHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 44433222 113778999999999854
No 273
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.26 E-value=1.5e-12 Score=111.25 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=87.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeE-EEEEC-CEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIG-GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
.++||+++|++|||||||+++|+.+.|...+.+|++..+.. ..... +..+.+.+||+++..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------------- 72 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE----------------- 72 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGG-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCch-----------------
Confidence 47999999999999999999999999998888998765533 33333 445889999888721
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.+ ..++..+++++|++++|||.... .....+.
T Consensus 73 -------~~------------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~ 104 (218)
T 4djt_A 73 -------KK------------------------------------AVLKDVYYIGASGAILFFDVTSR-----ITCQNLA 104 (218)
T ss_dssp -------GT------------------------------------SCCCHHHHTTCSEEEEEEETTCH-----HHHHTHH
T ss_pred -------hh------------------------------------chHHHHHhhcCCEEEEEEeCCCH-----HHHHHHH
Confidence 11 33456678999999999985432 1223444
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+..+........++.+++||.|+..
T Consensus 105 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 105 RWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp HHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 666666555555678999999999854
No 274
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.26 E-value=1.5e-12 Score=108.86 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=83.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+.+|++..+.. +. ...+.+.+||+++...+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~l~Dt~G~~~~----------------- 80 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-IT--KGNVTIKLWDIGGQPRF----------------- 80 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EE--ETTEEEEEEEECCSHHH-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EE--eCCEEEEEEECCCCHhH-----------------
Confidence 57999999999999999999999999998899999866642 33 33567789988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 81 -------------------------------------------~~~~~~~~~~~d~ii~v~D~~~~-----~s~~~~~~~ 112 (188)
T 1zd9_A 81 -------------------------------------------RSMWERYCRGVSAIVYMVDAADQ-----EKIEASKNE 112 (188)
T ss_dssp -------------------------------------------HTTHHHHHTTCSEEEEEEETTCG-----GGHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 22355678999999999985432 112233344
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... .....|+.+++||.|+..
T Consensus 113 ~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 113 LHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHhCcccCCCCEEEEEECCCCcc
Confidence 4433332 236678999999999854
No 275
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.26 E-value=6.7e-12 Score=105.87 Aligned_cols=118 Identities=17% Similarity=0.285 Sum_probs=85.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+.+++...|...+.||++..+ ...+.+++..+.+.+||+++..++
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------------- 67 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY----------------- 67 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT-----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh-----------------
Confidence 58999999999999999999999999999999987555 678899999999999988762111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.+...++++++++++|||...... ...+..|
T Consensus 68 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~ 99 (199)
T 2f9l_A 68 -------------------------------------------RRITSAYYRGAVGALLVYDIAKHLT-----YENVERW 99 (199)
T ss_dssp -------------------------------------------TCCCHHHHTTCSEEEEEEETTCHHH-----HHTHHHH
T ss_pred -------------------------------------------hhhhHHHHhcCCEEEEEEECcCHHH-----HHHHHHH
Confidence 2234567788999999998543221 1122335
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+........++..+++|.|+.
T Consensus 100 ~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 100 LKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCG
T ss_pred HHHHHHhcCCCCeEEEEEECcccc
Confidence 444333334567888999999984
No 276
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.26 E-value=3.3e-12 Score=107.31 Aligned_cols=152 Identities=17% Similarity=0.217 Sum_probs=92.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|+.+.|...+.+|++..+ ...+.+++.........+.. ..+ .|-...+... .
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~-~ 79 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN-NNI----NSINDDNNVI-I 79 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC--------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccc-ccc----cccccccccc-c
Confidence 369999999999999999999999999999999997655 55566655443221111100 000 0000000000 0
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
. ..............+.+|||+|++.+..++..+++.+|++++|||..... ....+..
T Consensus 80 ~-----------------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~-----s~~~~~~ 137 (208)
T 3clv_A 80 T-----------------NQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSN-----TLDRAKT 137 (208)
T ss_dssp ----------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHH-----HHHHHHH
T ss_pred c-----------------cccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH-----HHHHHHH
Confidence 0 00000011123478999999999999999999999999999999854321 1123345
Q ss_pred cceeeeccCCCcccccccceeec
Q psy9997 161 WFWFISTEHSPPMKLHTLGFITN 183 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~~ 183 (330)
|+..+..... .|+.++++|.|
T Consensus 138 ~~~~i~~~~~--~piilv~NK~D 158 (208)
T 3clv_A 138 WVNQLKISSN--YIIILVANKID 158 (208)
T ss_dssp HHHHHHHHSC--CEEEEEEECTT
T ss_pred HHHHHHhhCC--CcEEEEEECCC
Confidence 5554443322 78899999998
No 277
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=4.7e-12 Score=105.54 Aligned_cols=116 Identities=15% Similarity=0.160 Sum_probs=81.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||++++..+.|. .+.||++.. ...+.+++ +.+.+||+++..++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~----------------- 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESL----------------- 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC---------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhH-----------------
Confidence 5789999999999999999999999887 778888733 44556665 77889998872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||.... .....+..|
T Consensus 74 -------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~~ 105 (187)
T 1zj6_A 74 -------------------------------------------RSSWNTYYTNTEFVIVVVDSTDR-----ERISVTREE 105 (187)
T ss_dssp -------------------------------------------CGGGHHHHTTCCEEEEEEETTCT-----TTHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEeCCCH-----HHHHHHHHH
Confidence 23456678999999999985432 112233345
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... .....|+.+++||.|+..
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 106 LYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp HHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhchhhCCCeEEEEEECCCCcC
Confidence 4444332 235678999999999953
No 278
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.25 E-value=7.7e-12 Score=113.71 Aligned_cols=117 Identities=53% Similarity=0.926 Sum_probs=90.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
.+||+++|++|||||||+.+|..+.|...+.+|+++.+...+.+++..+.+.+||+++...+
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------------ 216 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY------------------ 216 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG------------------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhh------------------
Confidence 58999999999999999999999999999999999988888899999999999998872111
Q ss_pred eccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc-CCc
Q psy9997 83 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL-GGW 161 (330)
Q Consensus 83 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~ 161 (330)
..++..|++++|++++|||..... + ...+ ..|
T Consensus 217 ------------------------------------------~~~~~~~~~~~d~~i~v~d~~~~~--s---~~~~~~~~ 249 (332)
T 2wkq_A 217 ------------------------------------------DRLRPLSYPQTDVFLICFSLVSPA--S---FHHVRAKW 249 (332)
T ss_dssp ------------------------------------------TTTGGGGCTTCSEEEEEEETTCHH--H---HHHHHHTH
T ss_pred ------------------------------------------hHHHHHhccCCCEEEEEEeCCCHH--H---HHHHHHHH
Confidence 234567899999999999854321 1 1122 245
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+..+... .+..|+.++|||.|+.
T Consensus 250 ~~~~~~~-~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 250 YPEVRHH-CPNTPIILVGTKLDLR 272 (332)
T ss_dssp HHHHHHH-CTTSCEEEEEECHHHH
T ss_pred HHHHHhh-CCCCcEEEEEEchhcc
Confidence 4444332 2377889999999984
No 279
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.24 E-value=2.5e-12 Score=118.70 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=67.3
Q ss_pred ccccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhh
Q psy9997 190 RDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLA 269 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~ 269 (330)
..+.+|||+|.... .......+|++++|+|.+..+.+..+. ..+ .+.|+++|+||+|+.....
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~----~~~p~ivVlNK~Dl~~~~~------ 234 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK----KGV----LELADIVVVNKADGEHHKE------ 234 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC----TTS----GGGCSEEEEECCCGGGHHH------
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH----HhH----hhcCCEEEEECCCCcChhH------
Confidence 35678899984321 122347899999999987665543333 111 2359999999999964211
Q ss_pred hCCCCCcCHHHHHHHHHHhC------CeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 270 KNKQKPISFEQGEKLAKELK------AVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.....++........+ ..+++++||++|.|++++++.+...+-
T Consensus 235 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 235 ----ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp ----HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0001112222211121 257999999999999999999987764
No 280
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.23 E-value=5.8e-12 Score=105.26 Aligned_cols=117 Identities=7% Similarity=0.037 Sum_probs=82.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCC-CCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+++|..+. |...+.+|++ .....+.+++ ..+.+||+++.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~------------------- 77 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQ------------------- 77 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCS-------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCC-------------------
Confidence 57899999999999999999999888 7788888886 3344555554 67889988861
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.+ +.++..+++++|++++|||.... .....+..
T Consensus 78 -----~~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~ 111 (190)
T 2h57_A 78 -----GRY------------------------------------RNLWEHYYKEGQAIIFVIDSSDR-----LRMVVAKE 111 (190)
T ss_dssp -----TTT------------------------------------GGGGGGGGGGCSEEEEEEETTCH-----HHHHHHHH
T ss_pred -----HHH------------------------------------HHHHHHHHhcCCEEEEEEECCCH-----HHHHHHHH
Confidence 111 33456788999999999985432 11123334
Q ss_pred cceeeeccCC---CcccccccceeeccCC
Q psy9997 161 WFWFISTEHS---PPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~~~~---~~~~~~~~g~~~~~~~ 186 (330)
|+..+..... ...++.+++||.|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 112 ELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp HHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 4444433322 5678899999999953
No 281
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.21 E-value=7.3e-12 Score=103.90 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=81.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+++|..+.| ..+.+|++..+ ..+.+++ +.+.+||+++..+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~------------------ 77 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQES------------------ 77 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGG------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHh------------------
Confidence 579999999999999999999999998 67778887443 4556665 7788998887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..++..+++++|++++|||.... .....+..|
T Consensus 78 ------~------------------------------------~~~~~~~~~~~d~ii~v~D~~~~-----~s~~~~~~~ 110 (181)
T 2h17_A 78 ------L------------------------------------RSSWNTYYTNTEFVIVVVDSTDR-----ERISVTREE 110 (181)
T ss_dssp ------G------------------------------------TCGGGGGGTTCCEEEEEEETTCT-----TTHHHHHHH
T ss_pred ------H------------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 1 33456789999999999985432 111223334
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... .....++.+++||.|+..
T Consensus 111 ~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 111 LYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhChhhCCCeEEEEEECCCccc
Confidence 4333222 246678899999999853
No 282
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.20 E-value=2.2e-11 Score=101.25 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=81.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||++++..+. ...+.||++.. ...+.++ ...+.+||+++..++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~----------------- 75 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHR--GFKLNIWDVGGQKSL----------------- 75 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEET--TEEEEEEEECCSHHH-----------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEEC--CEEEEEEECCCCHhH-----------------
Confidence 57899999999999999999999988 77888898733 3455555 467889988872211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||..... ....+..|
T Consensus 76 -------------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 107 (186)
T 1ksh_A 76 -------------------------------------------RSYWRNYFESTDGLIWVVDSADRQ-----RMQDCQRE 107 (186)
T ss_dssp -------------------------------------------HTTGGGGCTTCSEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhcCCCEEEEEEECcCHH-----HHHHHHHH
Confidence 234567889999999999854321 11233334
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 108 LQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhChhcCCCcEEEEEeCccCCC
Confidence 4433332 335688999999999854
No 283
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.19 E-value=2.7e-12 Score=109.43 Aligned_cols=122 Identities=11% Similarity=0.011 Sum_probs=80.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCE-EEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGE-PYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
+.+||+++|++|||||||+.+|+.+.|...+.++..+.+. +.+++. .+.+.+||+++...++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~--------------- 68 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLR--------------- 68 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHH---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHH---------------
Confidence 5799999999999999999999999999988776544333 566654 6889999988732210
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
..++..|++++|++++|||......... .....
T Consensus 69 --------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~~~~ 101 (214)
T 2fh5_B 69 --------------------------------------------FQLLDRFKSSARAVVFVVDSAAFQREVK---DVAEF 101 (214)
T ss_dssp --------------------------------------------HHHHHHHGGGEEEEEEEEETTTHHHHHH---HHHHH
T ss_pred --------------------------------------------HHHHHHHHhhCCEEEEEEECCCcCHHHH---HHHHH
Confidence 1134457899999999998653111111 11111
Q ss_pred cceeeec--cCCCcccccccceeeccCCC
Q psy9997 161 WFWFIST--EHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 161 ~~~~~~~--~~~~~~~~~~~g~~~~~~~~ 187 (330)
|...+.. ...+..|+.++|||.|+...
T Consensus 102 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 102 LYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2222211 23456789999999999643
No 284
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.19 E-value=6.7e-12 Score=101.93 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=78.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+|..+.|.. +.||++.. ...+.. ..+.+.+||+++...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~-------------------- 56 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDK-------------------- 56 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGG--------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChh--------------------
Confidence 699999999999999999999999864 67888732 333333 447788998887211
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcce
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFW 163 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~ 163 (330)
+ +.++..+++++|++++|||.... ........|+.
T Consensus 57 --------~--------------------------------~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~~~ 91 (164)
T 1r8s_A 57 --------I--------------------------------RPLWRHYFQNTQGLIFVVDSNDR-----ERVNEAREELM 91 (164)
T ss_dssp --------G--------------------------------HHHHHHHTTTCSEEEEEEETTCG-----GGHHHHHHHHH
T ss_pred --------h--------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHHHHH
Confidence 1 33455678999999999985432 11122334544
Q ss_pred eeec-cCCCcccccccceeeccCC
Q psy9997 164 FIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 164 ~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.. ...+..|+.++|||.|+..
T Consensus 92 ~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 92 RMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHhchhhcCCeEEEEEECcCCcC
Confidence 4333 2345778999999999954
No 285
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.19 E-value=3.9e-11 Score=100.03 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=80.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.+.. +.||++.. ...+.++ .+.+.+||+++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~-------------------- 76 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQ-------------------- 76 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCS--------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCC--------------------
Confidence 57999999999999999999999888864 67787632 3455555 467889988872
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+++ +.++..+++++|++++|||..... .......|
T Consensus 77 ----~~~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 111 (189)
T 2x77_A 77 ----TGV------------------------------------RPYWRCYFSDTDAVIYVVDSTDRD-----RMGVAKHE 111 (189)
T ss_dssp ----SSS------------------------------------CCCCSSSSTTCCEEEEEEETTCCT-----THHHHHHH
T ss_pred ----HhH------------------------------------HHHHHHHhhcCCEEEEEEeCCCHH-----HHHHHHHH
Confidence 111 334667899999999999854321 11222334
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ...+..|+.+++||.|+..
T Consensus 112 ~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 112 LYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp HHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred HHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 433322 2345778999999999964
No 286
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.18 E-value=2.8e-11 Score=98.80 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=80.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.|. .+.||++.. ...+.++ ...+.+||+++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~------------------ 63 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTS------------------ 63 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGG------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChh------------------
Confidence 4689999999999999999999999985 477787532 3455555 56788898876211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ ..++..+++++|++++|||..... .......|
T Consensus 64 ----------~--------------------------------~~~~~~~~~~~d~ii~v~d~~~~~-----s~~~~~~~ 96 (171)
T 1upt_A 64 ----------I--------------------------------RPYWRCYYSNTDAVIYVVDSCDRD-----RIGISKSE 96 (171)
T ss_dssp ----------G--------------------------------GGGGGGGCTTCSEEEEEEETTCCT-----THHHHHHH
T ss_pred ----------h--------------------------------hHHHHHHhccCCEEEEEEECCCHH-----HHHHHHHH
Confidence 1 334567889999999999854321 11222334
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+...... ..+..|+.+++||.|+..
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 97 LVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhchhhCCCEEEEEEECCCCcC
Confidence 4333222 236778999999999854
No 287
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.18 E-value=1.2e-11 Score=102.46 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=80.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.+ ..+.||++.. ...+.+++ ..+.+||+++...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~------------------ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTS------------------ 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHh------------------
Confidence 579999999999999999999998888 6677888733 34555654 7788998887211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ +.++..+++++|++++|||.... .....+..|
T Consensus 75 ------~------------------------------------~~~~~~~~~~~d~ii~v~d~~~~-----~s~~~~~~~ 107 (183)
T 1moz_A 75 ------I------------------------------------RPYWRCYYADTAAVIFVVDSTDK-----DRMSTASKE 107 (183)
T ss_dssp ------C------------------------------------CTTGGGTTTTEEEEEEEEETTCT-----TTHHHHHHH
T ss_pred ------H------------------------------------HHHHHHHhccCCEEEEEEECCCH-----HHHHHHHHH
Confidence 1 23456788999999999985432 111223344
Q ss_pred ceeeecc-CCCcccccccceeeccCC
Q psy9997 162 FWFISTE-HSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~g~~~~~~~ 186 (330)
+..+... ..+..|+.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 108 LHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp HHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHHcChhhCCCeEEEEEECCCCCC
Confidence 4433332 246788999999999853
No 288
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.18 E-value=1.3e-11 Score=103.49 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=78.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|. .+.||++. ....+... .+.+.+||+++...+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~i~Dt~G~~~~----------------- 86 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-NVETVEYK--NICFTVWDVGGQDKI----------------- 86 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE-EEEEEEET--TEEEEEEECC----------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce-eEEEEEEC--CEEEEEEECCCCHhH-----------------
Confidence 5799999999999999999999998886 46777762 23344444 467889988872111
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
..++..+++++|++++|||..... ....+..|
T Consensus 87 -------------------------------------------~~~~~~~~~~~d~iilv~D~~~~~-----s~~~~~~~ 118 (192)
T 2b6h_A 87 -------------------------------------------RPLWRHYFQNTQGLIFVVDSNDRE-----RVQESADE 118 (192)
T ss_dssp -------------------------------------------CTTHHHHHHTCCEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhccCCEEEEEEECCCHH-----HHHHHHHH
Confidence 234556789999999999854321 11223344
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ...+..|+.+++||.|+..
T Consensus 119 l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 119 LQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhcccccCCCeEEEEEECCCCCC
Confidence 443322 2335678999999999954
No 289
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.17 E-value=2.2e-11 Score=112.38 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=36.3
Q ss_pred CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEEeeccCCCHHHH
Q psy9997 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNV 307 (330)
Q Consensus 246 ~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 307 (330)
..|+++|+||.|..-.. . .+....+.+..+++..+ .+++++||+...++.++
T Consensus 201 ~KPvi~v~N~~e~d~~~--------~-~~n~~~~~v~~~a~~~g-~~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPD--------G-RGNPQVEAVRRKALEEG-AEVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTT--------C-TTCHHHHHHHHHHHHHT-CEEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhcc--------c-chhhHHHHHHHHHHHcC-CeEEEeechhHHHHHHh
Confidence 47999999999853210 0 02345677888998887 68999999985444433
No 290
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.13 E-value=8.4e-12 Score=103.69 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=79.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.++..+.+ ..+.||++. ....+.++ .+.+.+||+++...+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~----------------- 73 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKI----------------- 73 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEET--TEEEEEEECSSCGGG-----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEEC--CEEEEEEECCCCHHH-----------------
Confidence 468999999999999999999998765 456777763 24455666 467889988862211
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.++..|++++|++++|||..... .......|
T Consensus 74 -------------------------------------------~~~~~~~~~~~~~~i~v~d~~~~~-----s~~~~~~~ 105 (181)
T 1fzq_A 74 -------------------------------------------RPYWRSYFENTDILIYVIDSADRK-----RFEETGQE 105 (181)
T ss_dssp -------------------------------------------HHHHHHHHTTCSEEEEEEETTCGG-----GHHHHHHH
T ss_pred -------------------------------------------HHHHHHHhCCCCEEEEEEECcCHH-----HHHHHHHH
Confidence 233456889999999999854321 11122334
Q ss_pred ceeeec-cCCCcccccccceeeccCC
Q psy9997 162 FWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.. ...+..|+.++|||.|+..
T Consensus 106 ~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 106 LTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp HHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHhChhhcCCCEEEEEECcCccc
Confidence 433322 2235678999999999964
No 291
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.13 E-value=1.1e-11 Score=126.27 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=51.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCC
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~ 260 (330)
.+.+|||+|+..|......+++.+|++++|+|+++..+++... .|..... .++|+++|+||+|+..
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~-~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH---TTCEEEEEEECHHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCeEEEEECCCcch
Confidence 3455666666777777777889999999999999998888876 5554332 3789999999999863
No 292
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.12 E-value=1.2e-11 Score=120.26 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=50.8
Q ss_pred cccccccccccc-----------cccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCC
Q psy9997 191 DRSLFDTAGQED-----------YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259 (330)
Q Consensus 191 ~~~~~D~~g~e~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~ 259 (330)
.+.+|||+|... +......++..+|++++|+|+++....+... .|+..+... +.|+++|+||+|+.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFS-EAIGALRGH--EDKIRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHH-HHHHHTTTC--GGGEEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHH-HHHHHHHhc--CCCEEEEEECCCcc
Confidence 467888988875 3344455678899999999998865555554 566666543 68999999999997
Q ss_pred CC
Q psy9997 260 ED 261 (330)
Q Consensus 260 ~~ 261 (330)
..
T Consensus 232 ~~ 233 (550)
T 2qpt_A 232 ET 233 (550)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 293
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.11 E-value=1.6e-11 Score=103.22 Aligned_cols=117 Identities=10% Similarity=0.009 Sum_probs=77.1
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eE--EEEE-CCEEEEEEEeecCCceeEeEEEeecCCCcee
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AV--TVMI-GGEPYTLGLNFARTMQTIKCVVVGDGAVGKT 77 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~--~~~~-~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKT 77 (330)
+.+||+++|++|||||||++++.. .|... +|++..+ .+ ...+ ++..+.+++||+++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------------- 78 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPG----------------- 78 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCS-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCC-----------------
Confidence 478999999999999999986654 55444 4554333 22 3334 36778899999886
Q ss_pred EEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccC---CCCCCCCceEEEEeccccchhhhccc
Q psy9997 78 CLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR---PLSYPQTDVFLVCFGNMMNIRRSVDW 154 (330)
Q Consensus 78 sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~---~~~~~~~~~~i~v~~~~~~~~~~~~~ 154 (330)
.++| ..+. ..||+++|++++|||.... ....
T Consensus 79 -------~~~~------------------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~ 112 (196)
T 3llu_A 79 -------QMDF------------------------------------FDPTFDYEMIFRGTGALIYVIDAQDD---YMEA 112 (196)
T ss_dssp -------SCCT------------------------------------TCTTCCHHHHHHTCSEEEEEEETTSC---CHHH
T ss_pred -------CHHH------------------------------------HhhhhhcccccccCCEEEEEEECCCc---hHHH
Confidence 1221 1122 5789999999999986653 2222
Q ss_pred ccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 155 NRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
...+..|+.... ...+..++.++|||.|+.
T Consensus 113 ~~~~~~~l~~~~-~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 113 LTRLHITVSKAY-KVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp HHHHHHHHHHHH-HHCTTCEEEEEEECGGGS
T ss_pred HHHHHHHHHHHH-hcCCCCcEEEEEeccccC
Confidence 233444554432 134678999999999974
No 294
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.07 E-value=1e-10 Score=102.91 Aligned_cols=122 Identities=15% Similarity=0.066 Sum_probs=67.9
Q ss_pred ccccccccccccccccccCc------cccCCCEEEEEEEcCChhhHhhhhhcchhhhh-hcCCCCcEEEEEeccCCCCCc
Q psy9997 190 RDRSLFDTAGQEDYDRLRPL------SYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT-HHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 190 ~~~~~~D~~g~e~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~-~~~~~~piilV~nK~Dl~~~~ 262 (330)
.++.+|||+|+......... .+.+ ++++.+.|.+...+..+....+..... ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 35789999999876443221 3355 777778776533222222101111111 112368999999999997532
Q ss_pred hhhHHhhhCCCCCcCHHH------------------HHHHHHHhCC-eeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 263 PTLEKLAKNKQKPISFEQ------------------GEKLAKELKA-VKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 263 ~~~~~~~~~~~~~v~~~~------------------~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
.. .+..... + ..+. ...+++.++. .+++++||++|.|++++++++.+.+-
T Consensus 188 ~~-~~~~~~l-~--~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK-ERHRKYF-E--DIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH-HHHHHHH-H--CHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH-HHHHHHH-h--ChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 10 0000000 0 0000 0011344442 37999999999999999999987653
No 295
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.03 E-value=1.1e-10 Score=95.39 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=43.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
|+++||+++|++|||||||++++....+...+.|+.. +.....+.+++ ..+.+||+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G 59 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPG 59 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCC
Confidence 8899999999999999999999998877666656543 34455666665 4688999887
No 296
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.02 E-value=3.4e-10 Score=109.00 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=81.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEE
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLL 80 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~ 80 (330)
++.+||+++|++|||||||+.+|..+.+. .+.||++..+. .++...+.+.+||+++...+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~---~~~~~~~~~~l~Dt~G~~~~---------------- 379 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKI---------------- 379 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE---EEESSSCEEEEEEECCCGGG----------------
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE---EEEeCCEEEEEEECCCcHHH----------------
Confidence 35799999999999999999999999975 46678875543 23334567899998871111
Q ss_pred EeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCC
Q psy9997 81 ISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGG 160 (330)
Q Consensus 81 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 160 (330)
+.++..||+++|++|+|||.+.. .....+..
T Consensus 380 --------------------------------------------~~~~~~~~~~ad~~i~V~D~~~~-----~s~~~~~~ 410 (497)
T 3lvq_E 380 --------------------------------------------RPLWRHYYTGTQGLIFVVDCADR-----DRIDEARQ 410 (497)
T ss_dssp --------------------------------------------SGGGGGGGTTCCEEEEEEETTCG-----GGHHHHHH
T ss_pred --------------------------------------------HHHHHHHhccCCEEEEEEECcch-----hHHHHHHH
Confidence 33466789999999999985532 11222333
Q ss_pred cceeeec-cCCCcccccccceeeccCC
Q psy9997 161 WFWFIST-EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 161 ~~~~~~~-~~~~~~~~~~~g~~~~~~~ 186 (330)
|+..+.. ......|+.+++||.|+..
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 4433322 2335788999999999854
No 297
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.98 E-value=7.4e-11 Score=108.16 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=63.2
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.+|||+|....... ....+|++++|+|.+....+..+. ... .+.|.++|+||+|+.......
T Consensus 150 ~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~----~~~----~~~p~ivv~NK~Dl~~~~~~~----- 213 (341)
T 2p67_A 150 DVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK----KGL----MEVADLIVINKDDGDNHTNVA----- 213 (341)
T ss_dssp SEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC----HHH----HHHCSEEEECCCCTTCHHHHH-----
T ss_pred CEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH----Hhh----hcccCEEEEECCCCCChHHHH-----
Confidence 5678999996543322 357899999999997654322111 111 146899999999996431000
Q ss_pred CCCCCcCHHHHHHHHHHhC------CeeEEEEeeccCCCHHHHHHHHHHHhc
Q psy9997 271 NKQKPISFEQGEKLAKELK------AVKYVECSALTQKGLKNVFDEAILAAL 316 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~~l~~~i~ 316 (330)
...++.+......+ ..+++++||++|.|++++++.+...+.
T Consensus 214 -----~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 -----IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -----HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00112222222222 257899999999999999999987653
No 298
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.97 E-value=1.2e-10 Score=105.21 Aligned_cols=123 Identities=14% Similarity=0.127 Sum_probs=81.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC--CCC-CCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN--KFP-SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTC 78 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~--~f~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTs 78 (330)
..+||+++|++|||||||+.++..+ .+. ..+.+|++..+. .+.+++ .+.+.+||++|...+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~-------------- 65 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVF-------------- 65 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHH--------------
Confidence 4689999999999999999999987 333 256778876554 344444 688999998873211
Q ss_pred EEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 79 l~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
.. ..+..++..+++++|++++|||.... . ....+
T Consensus 66 -----~~------------------------------------~~~~~~~~~~~~~ad~vi~V~D~t~~--~---s~~~l 99 (307)
T 3r7w_A 66 -----ME------------------------------------NYFTKQKDHIFQMVQVLIHVFDVEST--E---VLKDI 99 (307)
T ss_dssp -----HH------------------------------------HHHTTTHHHHHTTCSEEEEEEETTCS--C---HHHHH
T ss_pred -----hh------------------------------------hhhhhHHHHHhccCCEEEEEEECCCh--h---hHHHH
Confidence 00 01134567789999999999985432 1 11222
Q ss_pred CCcceeeec--cCCCcccccccceeeccCC
Q psy9997 159 GGWFWFIST--EHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 159 ~~~~~~~~~--~~~~~~~~~~~g~~~~~~~ 186 (330)
..|...+.. ...+..|+.++|+|.|+..
T Consensus 100 ~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 100 EIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 223222211 2256789999999999864
No 299
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.97 E-value=5.9e-11 Score=109.11 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=57.5
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.++||+|.... .......+|.+++|+|.++....+.+. ..+ ...|.++|+||+|+.....
T Consensus 168 ~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~----~~i----l~~~~ivVlNK~Dl~~~~~------- 229 (349)
T 2www_A 168 DIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK----RGI----IEMADLVAVTKSDGDLIVP------- 229 (349)
T ss_dssp SEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH-------
T ss_pred CEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH----HHH----HhcCCEEEEeeecCCCchh-------
Confidence 3456777774211 122356899999999998764332222 111 2458899999999964210
Q ss_pred CCCCCcCHHHHHHHHHHh---------CCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKEL---------KAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
. ......+.... ...+++.+||++|.|++++++.+...+
T Consensus 230 -----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 230 -----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp -----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 01111222111 125789999999999999999987754
No 300
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.94 E-value=7.4e-10 Score=92.88 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=69.2
Q ss_pred ccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcc---hhhhhhc--CCCCcEEEEEecc-CCCCCchhhHHhh
Q psy9997 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW---VPEITHH--CQKTPFLLVGTQI-DLREDAPTLEKLA 269 (330)
Q Consensus 196 D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~i~~~--~~~~piilV~nK~-Dl~~~~~~~~~~~ 269 (330)
+.+||++++.+|..||.++|++|+|.|.+|++-++ ..+.+ +..+.+. ..++|+++.+||. |+..+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-------- 178 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-------- 178 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--------
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--------
Confidence 46799999999999999999999999999886544 22122 2223222 2578999999995 67533
Q ss_pred hCCCCCcCHHHHHHHHH---HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 270 KNKQKPISFEQGEKLAK---ELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+..+...... -...+.+..|||++|+|+.+.+++++..+.++
T Consensus 179 ------ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 179 ------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp ------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred ------CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 33333222111 11347799999999999999999998877543
No 301
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.94 E-value=1.4e-10 Score=105.81 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=76.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+.+||+++|++|||||||+.+|..+.|...+ ||++..+. .+.. ..+.+.+||+++.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~-~~~~--~~~~l~i~Dt~G~-------------------- 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE-TVEY--KNISFTVWDVGGQ-------------------- 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE-EEEE--TTEEEEEEECC----------------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE-EEec--CcEEEEEEECCCC--------------------
Confidence 4689999999999999999999999886544 67654432 2333 3467889988861
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+.| ..++..+++++|++++|||.... .....+..|
T Consensus 220 ----~~~------------------------------------~~~~~~~~~~ad~vilV~D~~~~-----~s~~~~~~~ 254 (329)
T 3o47_A 220 ----DKI------------------------------------RPLWRHYFQNTQGLIFVVDSNDR-----ERVNEAREE 254 (329)
T ss_dssp -------------------------------------------CCSHHHHHTTEEEEEEEEETTCS-----SSHHHHHHH
T ss_pred ----HhH------------------------------------HHHHHHHhccCCEEEEEEECCch-----HHHHHHHHH
Confidence 111 33456788999999999985421 111122233
Q ss_pred ceeee-ccCCCcccccccceeeccCC
Q psy9997 162 FWFIS-TEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~g~~~~~~~ 186 (330)
+.... ....+..|+.++|||.|+..
T Consensus 255 ~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 255 LMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHhhhccCCCeEEEEEECccCCc
Confidence 33322 23346788999999999864
No 302
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.91 E-value=8.3e-10 Score=90.79 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=78.7
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.+||+++|++|||||||++++....+ ...+.+|..+.+...+.+++.+ +.+||+++.....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~-------------- 66 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREAS-------------- 66 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCS--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccch--------------
Confidence 358999999999999999999998764 3445555556667788888765 6799888721100
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
... . ...... ...+++++|++++|||...... +. ..
T Consensus 67 ----------~~~------------------------~---~~~~~~-~~~~~~~ad~~i~v~D~~~~~s--~~----~~ 102 (172)
T 2gj8_A 67 ----------DEV------------------------E---RIGIER-AWQEIEQADRVLFMVDGTTTDA--VD----PA 102 (172)
T ss_dssp ----------SHH------------------------H---HHHHHH-HHHHHHTCSEEEEEEETTTCCC--CS----HH
T ss_pred ----------hHH------------------------H---HHHHHH-HHHHHHhCCEEEEEEECCCCCC--HH----HH
Confidence 000 0 000000 1135789999999998543221 11 12
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.|+..+........|+.+++||.|+.
T Consensus 103 ~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 103 EIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp HHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEECccCC
Confidence 45444444444568899999999983
No 303
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.88 E-value=6.1e-10 Score=108.20 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=75.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEE---------EECCEEEEEEEeecCCceeEeEEEeec
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV---------MIGGEPYTLGLNFARTMQTIKCVVVGD 71 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ki~vvG~ 71 (330)
+.++||+++|++|||||||++++..+.|...+.+|++..+.... ..++..+.+.+||++|
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G----------- 107 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG----------- 107 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCc-----------
Confidence 45799999999999999999999999999999999987664322 1234467788998776
Q ss_pred CCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhh
Q psy9997 72 GAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRS 151 (330)
Q Consensus 72 ~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~ 151 (330)
.+.+ ..+...|++.++++++|||.+..
T Consensus 108 -------------~e~~------------------------------------~~~~~~~l~~~d~ii~V~D~s~~---- 134 (535)
T 3dpu_A 108 -------------QEIM------------------------------------HASHQFFMTRSSVYMLLLDSRTD---- 134 (535)
T ss_dssp -------------CCTT------------------------------------TTTCHHHHHSSEEEEEEECGGGG----
T ss_pred -------------HHHH------------------------------------HHHHHHHccCCcEEEEEEeCCCc----
Confidence 1111 33456678889999999985432
Q ss_pred cccccccCCcceeeeccCCCcccccccceeeccCCCcc
Q psy9997 152 VDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWV 189 (330)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 189 (330)
.....|...+.... +..|+.++|||.|+.....
T Consensus 135 ----~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 135 ----SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp ----GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCC
T ss_pred ----hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccc
Confidence 23344554443332 3578899999999965443
No 304
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.88 E-value=1.7e-09 Score=87.13 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=72.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.||+++|++|||||||+.++..+.+. ..+.++..+.+...+..++. .+.+||+++.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~---------------- 63 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGD---------------- 63 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSS----------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCcc----------------
Confidence 58999999999999999999988753 33444444555667777775 56789888621100
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
+ -.+.+......+++.+|++++++|.......... .+..|
T Consensus 64 -----------------------------------~--~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~ 103 (161)
T 2dyk_A 64 -----------------------------------K--WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY---EVAEY 103 (161)
T ss_dssp -----------------------------------S--CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH---HHHHH
T ss_pred -----------------------------------c--hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH---HHHHH
Confidence 0 0012234455678999999999986653222111 11122
Q ss_pred ceeeeccCCCcccccccceeeccC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
+.. ...|+.+++||.|+.
T Consensus 104 ~~~------~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 104 LRR------KGKPVILVATKVDDP 121 (161)
T ss_dssp HHH------HTCCEEEEEECCCSG
T ss_pred HHh------cCCCEEEEEECcccc
Confidence 211 456789999999985
No 305
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.86 E-value=9.3e-11 Score=97.47 Aligned_cols=129 Identities=11% Similarity=-0.033 Sum_probs=81.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEee
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISY 83 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l 83 (330)
+||+++|++|||||||+.+|..+.|...+.|++... ...+.+. .+.+||+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~---------------------- 54 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGF---------------------- 54 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCB----------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCc----------------------
Confidence 699999999999999999999999988887765322 2233333 5677877651
Q ss_pred ccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCC-CceEEEEecccc--chhhh-cccccc--
Q psy9997 84 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQ-TDVFLVCFGNMM--NIRRS-VDWNRK-- 157 (330)
Q Consensus 84 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~-~~~~i~v~~~~~--~~~~~-~~~~~~-- 157 (330)
..+..||+.|++.+..+...|+++ +++++++|+... +.... ..|...
T Consensus 55 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~ 107 (190)
T 2cxx_A 55 ---------------------------GFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE 107 (190)
T ss_dssp ---------------------------SCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTC
T ss_pred ---------------------------cccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCc
Confidence 013457888888889888999988 887776664322 21111 111111
Q ss_pred cCCcceeeeccCCCcccccccceeeccCC
Q psy9997 158 LGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
................|+.+++||.|+..
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 108 IPIDVEFYQFLRELDIPTIVAVNKLDKIK 136 (190)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEECGGGCS
T ss_pred cHHHHHHHHHHHhcCCceEEEeehHhccC
Confidence 00000001111235678899999999853
No 306
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.85 E-value=1e-09 Score=91.15 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=45.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
|+.+||+++|++|||||||+.+++.+.+...+.|++. +.....+.+++ ..+.+||+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G 63 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPG 63 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCC
Confidence 6789999999999999999999998776555555553 33455666665 5678898887
No 307
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.85 E-value=4.7e-09 Score=97.02 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=76.2
Q ss_pred ccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHH
Q psy9997 200 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFE 279 (330)
Q Consensus 200 ~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 279 (330)
+++|......+++.++++++|+|++++. . .|..++.+...+.|+++|+||+|+... ....+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~-~~~~~l~~~~~~~p~ilV~NK~DL~~~-------------~~~~~ 116 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----G-SWLPGLHRFVGNNKVLLVGNKADLIPK-------------SVKHD 116 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----H-HCCTTHHHHSSSSCEEEEEECGGGSCT-------------TSCHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----c-cHHHHHHHHhCCCcEEEEEEChhcCCc-------------ccCHH
Confidence 3788888888899999999999999864 2 688888887778999999999999753 22333
Q ss_pred HHH----HHHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 280 QGE----KLAKELKA--VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 280 ~~~----~~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+.. .+++..+. ..++++||++|.|++++++.+....
T Consensus 117 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 117 KVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 333 34566662 1799999999999999999987654
No 308
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.81 E-value=5.5e-09 Score=101.40 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=44.1
Q ss_pred cccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 195 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
.||||+-.|..-....++-+|++++|.|...----+... .|. ...+ .++|.+++.||.|.....
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~-~a~~--~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMD-VCRM--RATPVMTFVNKMDREALH 168 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHH-HHHH--TTCCEEEEEECTTSCCCC
T ss_pred EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHH-HHHH--hCCceEEEEecccchhcc
Confidence 344444555555555677899999999998765555544 443 3333 389999999999997654
No 309
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.80 E-value=1.2e-09 Score=108.85 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=65.9
Q ss_pred cccccccccccc-------------cccccCccc-cCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEecc
Q psy9997 191 DRSLFDTAGQED-------------YDRLRPLSY-PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQI 256 (330)
Q Consensus 191 ~~~~~D~~g~e~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~ 256 (330)
.+.++|+||-.. .......++ ..+|++++|.|.++...-.+.. .++..+.. .+.|+++|.||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l-~ll~~L~~--~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL-KIAKEVDP--QGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH-HHHHHHCT--TCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH-HHHHHHHh--cCCCEEEEEeCc
Confidence 456778887543 111222222 5789999999998654433331 23444433 378999999999
Q ss_pred CCCCCchhhHHhhhCCCCCcCHHHHHH--HHHHhCCeeEEEEeeccCCCHHHHHHHHHHH
Q psy9997 257 DLREDAPTLEKLAKNKQKPISFEQGEK--LAKELKAVKYVECSALTQKGLKNVFDEAILA 314 (330)
Q Consensus 257 Dl~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 314 (330)
|+... .......... +....+..+++.+||++|.|++++++.+...
T Consensus 228 Dlv~~------------~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDE------------GTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCT------------TCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCc------------chhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 99764 1111111100 0001122457789999999999999988763
No 310
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.80 E-value=3e-10 Score=96.91 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=39.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC---CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~---~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+.++..+.|.. .+.+++...+ ....+.+||+++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G 64 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPG 64 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCC
Confidence 36899999999999999999999998865 3566665433 345677888876
No 311
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.78 E-value=4.4e-10 Score=93.80 Aligned_cols=51 Identities=22% Similarity=0.200 Sum_probs=33.3
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC---CCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~---~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+.++..+.+.. .+.+++...+ ....+.+||+++
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G 100 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPG 100 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCC
Confidence 35799999999999999999999988755 2333332211 334566777766
No 312
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.2e-09 Score=98.96 Aligned_cols=216 Identities=14% Similarity=0.051 Sum_probs=112.5
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC-CCCCCCceeecceEEEEECCceeeeeeeecCCCcccccc-------CCCCCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL-------RPLSYPQ 134 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l-------~~~~~~~ 134 (330)
..+|.++|.+|||||||+|++++.+- ..+|+.|.-+...-.+.+++ ..+++.||||.-.-... .....+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998763 34454444444334455555 45788999996322111 0124578
Q ss_pred CceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccc--cccccccccccccccCcccc
Q psy9997 135 TDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDR--SLFDTAGQEDYDRLRPLSYP 212 (330)
Q Consensus 135 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~D~~g~e~~~~~~~~~~~ 212 (330)
+|+++.|.|...-.........++..+...+. ..|...+-++.+... ..+.. ...+ ...+....+...+.-
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~-----~k~~~i~~nK~d~~g-i~i~~~~~~~~-l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLN-----KTPPDILIKKKEKGG-ISITNTVPLTH-LGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTTEEET-----CCCCCEEEEECSSSC-EEEEESSCCSS-CCHHHHHHHHHHTTC
T ss_pred cCccccccccCccHHHHHHHHHHHHHhhHhhc-----cCChhhhhhHhhhhh-hhhhcchhhhh-ccHHHHHHHHHHhcc
Confidence 99999999865322222222223322221111 112223333433311 00000 0000 001111222222222
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhh-cCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
..--++++.+++. +.+.+.. .. .....|.+++.||+|.... ++...+.+. .
T Consensus 223 t~kpv~~~~nv~e-ddl~d~~-------~~~~~~~~p~i~v~nKid~~~~-----------------eele~l~~~---~ 274 (376)
T 4a9a_A 223 NSAEIAFRCDATV-DDLIDVL-------EASSRRYMPAIYVLNKIDSLSI-----------------EELELLYRI---P 274 (376)
T ss_dssp CSEEEEECSCCCH-HHHHHHH-------TTTTCEEECEEEEEECGGGSCH-----------------HHHHHHTTS---T
T ss_pred cCCCeeecccCCH-HHHHHHH-------HHHHhhccceEEEEecccccCH-----------------HHHHHHhcc---c
Confidence 2233344444432 2222221 11 1125799999999997532 333333222 3
Q ss_pred eEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 292 KYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 292 ~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.++++|+..+.|++++.+.+.+.+
T Consensus 275 ~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 275 NAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp TEEECCTTTCTTHHHHHHHHHHHH
T ss_pred chhhhhhhhcccchhHHHHHHHHc
Confidence 478999999999999999887766
No 313
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.75 E-value=1.3e-09 Score=99.55 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=59.6
Q ss_pred cccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhh
Q psy9997 191 DRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAK 270 (330)
Q Consensus 191 ~~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~ 270 (330)
.+.++||+|...-. ......+|.+++++|.+..+..+.+. ..+. ..|.++|.||+|+...
T Consensus 149 ~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlNK~Dl~~~--------- 208 (337)
T 2qm8_A 149 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVNKADDGDG--------- 208 (337)
T ss_dssp CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CC----TTHH----HHCSEEEEECCSTTCC---------
T ss_pred CEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEEchhccCc---------
Confidence 45677888864321 12346889999999986543322222 1111 2366788899997542
Q ss_pred CCCCCcCHHHHHHHHHHh---C------CeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 271 NKQKPISFEQGEKLAKEL---K------AVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 271 ~~~~~v~~~~~~~~~~~~---~------~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
........+.+.... . ..+++.+||+++.|++++++.+....
T Consensus 209 ---~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 209 ---ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp ---HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111222233333321 1 24688999999999999999887654
No 314
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=89.90 Aligned_cols=108 Identities=8% Similarity=-0.046 Sum_probs=74.1
Q ss_pred ccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhc---chhhhhhc--CCCCcEEEEEec-cCCCCCchhhHHhh
Q psy9997 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEK---WVPEITHH--CQKTPFLLVGTQ-IDLREDAPTLEKLA 269 (330)
Q Consensus 196 D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~---~~~~i~~~--~~~~piilV~nK-~Dl~~~~~~~~~~~ 269 (330)
|.+||++.+.++..||.++|++|+|.|.+|++-++ ..+. ++..+.+. ..++|+++.+|| .|+..+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A-------- 263 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-------- 263 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--------
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--------
Confidence 45899999999999999999999999999987654 2212 22223222 258999999997 588543
Q ss_pred hCCCCCcCHHHHHHHHH---HhCCeeEEEEeeccCCCHHHHHHHHHHHhcCC
Q psy9997 270 KNKQKPISFEQGEKLAK---ELKAVKYVECSALTQKGLKNVFDEAILAALEP 318 (330)
Q Consensus 270 ~~~~~~v~~~~~~~~~~---~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i~~~ 318 (330)
.+..+..+... -...+.+..+||.+|+|+.+.+++++..+.++
T Consensus 264 ------ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 264 ------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ------CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 33333222111 11346799999999999999999999888543
No 315
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.70 E-value=2e-08 Score=92.93 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=75.7
Q ss_pred cccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCH
Q psy9997 199 GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISF 278 (330)
Q Consensus 199 g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~ 278 (330)
.+++|......+++.++++++|+|++++.+ .|..++.+...+.|+++|+||+|+... ....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~-------------~~~~ 117 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPR-------------SVKY 117 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCT-------------TCCH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCC-------------ccCH
Confidence 458888888888899999999999998773 577777777778999999999999753 2233
Q ss_pred HHHHH----HHHHhCC--eeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 279 EQGEK----LAKELKA--VKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 279 ~~~~~----~~~~~~~--~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
+...+ +++..+. ..++.+||++|.|++++++.+....
T Consensus 118 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 33333 3555553 2689999999999999999987654
No 316
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.69 E-value=8.5e-09 Score=88.63 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=37.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCC-CcccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-TVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++|+.+.|.....+ +..+.........+ ..+.+||+++
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG 85 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPG 85 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCC
Confidence 368999999999999999999999887532222 11122222233333 5678888887
No 317
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.66 E-value=2.1e-09 Score=89.51 Aligned_cols=120 Identities=12% Similarity=0.068 Sum_probs=74.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeE-EEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++|+.+.+ ..+.++.+..... ....+. .+.+||+++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G--------------------- 77 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPG--------------------- 77 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCC---------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCC---------------------
Confidence 57999999999999999999998874 4455555433322 222221 245666654
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCC---ceEEEEeccccchhhhccccccc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT---DVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
+....|+..+++.+..+...|++++ +++++++|......... ..+
T Consensus 78 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~---~~~ 125 (195)
T 3pqc_A 78 -----------------------------YGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSD---LMM 125 (195)
T ss_dssp -----------------------------BSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---HHH
T ss_pred -----------------------------CccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHH---HHH
Confidence 1112345555666777777888877 88888887543322111 112
Q ss_pred CCcceeeeccCCCcccccccceeeccC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..|+.. ...|+.+++||.|+.
T Consensus 126 ~~~~~~------~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 126 VEWMKS------LNIPFTIVLTKMDKV 146 (195)
T ss_dssp HHHHHH------TTCCEEEEEECGGGS
T ss_pred HHHHHH------cCCCEEEEEEChhcC
Confidence 223221 156789999999984
No 318
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.61 E-value=2.2e-08 Score=88.15 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=44.5
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCCc
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
|+.+||+++|++|||||||+++++.+.+ ...+.++........+..++. .+.+||++|.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~ 94 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGL 94 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCC
Confidence 5689999999999999999999998874 444555544444555566655 6789999883
No 319
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.61 E-value=5.4e-09 Score=87.17 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=67.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
.+||+++|++|||||||+++++.+.|...+.++.+... .....+++ .+.+||+++. |+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~--------~~~~~------- 84 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGY--------GFAKV------- 84 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCB--------CCCSS-------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCC--------Ccccc-------
Confidence 58999999999999999999999988777777765444 22333433 4677877761 11000
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCC---ceEEEEeccccchhhhccccccc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT---DVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
+...++.+..+...|++++ |++++|+|......... ..+
T Consensus 85 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~~ 126 (195)
T 1svi_A 85 -----------------------------------SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD---VQM 126 (195)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH---HHH
T ss_pred -----------------------------------CHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHH---HHH
Confidence 0011344566666777776 89999998554221111 011
Q ss_pred CCcceeeeccCCCcccccccceeeccCC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..|+. ....|+.+++||.|+..
T Consensus 127 ~~~~~------~~~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 127 YEFLK------YYGIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHH------HTTCCEEEEEECGGGSC
T ss_pred HHHHH------HcCCCEEEEEECcccCC
Confidence 12221 14567899999999853
No 320
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.55 E-value=1.1e-08 Score=87.48 Aligned_cols=43 Identities=26% Similarity=0.507 Sum_probs=27.5
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA 101 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~ 101 (330)
.+++++||+++|++|||||||++||+.+.|.+.|.||++..+.
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~ 51 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL 51 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEE
Confidence 4578899999999999999999999999999999999876553
No 321
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.54 E-value=2.4e-08 Score=87.64 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=41.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCC-CCCCCCCC-c-ccceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPT-V-FDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~t-v-~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++++... |...+.++ + .+.....+..++. .+.+||+++
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG 80 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPD 80 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcC
Confidence 46899999999999999999999877 66666664 3 2333445555553 467888876
No 322
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.54 E-value=1.5e-08 Score=100.17 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=48.8
Q ss_pred ccccccccccccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCc
Q psy9997 192 RSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDA 262 (330)
Q Consensus 192 ~~~~D~~g~e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~ 262 (330)
+.+.||||+..|.......++-+|++++|.|...--.-+... .|... .+. ++|.+++.||.|.....
T Consensus 69 iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~-v~~~a-~~~--~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRI-LFHAL-RKM--GIPTIFFINKIDQNGID 135 (638)
T ss_dssp CCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHH-HHHHH-HHH--TCSCEECCEECCSSSCC
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHH-HHHHH-HHc--CCCeEEEEeccccccCC
Confidence 456788888888777777888999999999998654434333 33333 332 78999999999987654
No 323
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.51 E-value=2.5e-08 Score=88.21 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=44.3
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
|+.+||+++|++|||||||+++++...+.....+++. +.....+...+.. +.+||+++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG 59 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPG 59 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCC
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCC
Confidence 8899999999999999999999998877555555554 3334455666654 78888876
No 324
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.50 E-value=1.3e-08 Score=94.25 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCC
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFP 89 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~ 89 (330)
.-...+++.++|.+|+|||||++++++..+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~ 48 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQAS 48 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC----
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 3345689999999999999999999988653
No 325
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.47 E-value=1.4e-07 Score=84.71 Aligned_cols=124 Identities=10% Similarity=-0.054 Sum_probs=74.6
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC--CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+..+|+++|++|||||||+++++...+.. ....|..+........ ....+.+|||++....+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~-------------- 69 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPM-------------- 69 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCC--------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchh--------------
Confidence 46789999999999999999999888742 2222332222222222 34567889888721100
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.. + .+.+......+++++|++++|+|.+...... .
T Consensus 70 --------------~~--------------------l----~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~-------~ 104 (301)
T 1wf3_A 70 --------------DA--------------------L----GEFMDQEVYEALADVNAVVWVVDLRHPPTPE-------D 104 (301)
T ss_dssp --------------SH--------------------H----HHHHHHHHHHHTSSCSEEEEEEETTSCCCHH-------H
T ss_pred --------------hH--------------------H----HHHHHHHHHHHHhcCCEEEEEEECCCCCChH-------H
Confidence 00 0 0112344556789999999999865432111 1
Q ss_pred CcceeeeccCCCcccccccceeeccCC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.|+........+..|..+++||.|+..
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 233222122224678899999999864
No 326
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.46 E-value=1.8e-07 Score=87.71 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=37.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|+.|+|||||+++++...+. ..+.+|..+...+.+.+.+.. .+.+||+++
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG 92 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPG 92 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcC
Confidence 589999999999999999999988763 334444455566667776542 678999887
No 327
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.43 E-value=6.6e-08 Score=84.90 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=40.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc-ccceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv-~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
++.+||+++|++|||||||+++++...+.....|.+ .+.....+...+ ..+.+||+++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG 61 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPG 61 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCC
Confidence 467999999999999999999999877643333322 222233334433 6778898887
No 328
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.42 E-value=2.3e-07 Score=88.43 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=32.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC--CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~--f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++.+. +...+.+|..+.....+.+++. .+.+|||++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G 290 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAG 290 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCC
Confidence 5899999999999999999999875 3455555655666677778775 578899887
No 329
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.38 E-value=8.6e-07 Score=82.21 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=54.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCC-CC-CCCCceeecceEEEEECCce---------------eeeeeeecCCCcc
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKF-PS-EYVPTVFDNYAVTVMIGGEP---------------YTLGLFDTAGQED 123 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~ 123 (330)
....++.++|.+|+|||||++++++... .. .++.+......-.+.+.+.. ..+.+||++|...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3457899999999999999999999765 33 33333322233345555421 3578999999643
Q ss_pred ccc-------cCCCCCCCCceEEEEec
Q psy9997 124 YDR-------LRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 124 ~~~-------l~~~~~~~~~~~i~v~~ 143 (330)
..+ ....+++.+|+++.+++
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd 124 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVR 124 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 12234578888888876
No 330
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.37 E-value=2e-07 Score=81.67 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=40.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
||+++|++|||||||++++....+.....|++. +.....+.+++. .+.+||++|
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG 57 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPG 57 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCC
Confidence 899999999999999999998765444444443 444556666765 678898887
No 331
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.36 E-value=1.2e-07 Score=83.91 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=38.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC-CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK-FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~-f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++... +..++..+-.+ .+...+.. ...+.+||+++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG 58 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPG 58 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCC
Confidence 5899999999999999999999865 44444322212 23334454 56688898887
No 332
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.33 E-value=4.4e-06 Score=83.63 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=36.0
Q ss_pred cCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCC
Q psy9997 207 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRED 261 (330)
Q Consensus 207 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~ 261 (330)
....++-+|++++|.|+..--.-+... .|.....+ ++|.++|.||.|....
T Consensus 102 v~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~~---~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 102 VERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANKY---GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHHH---TCCEEEEEECSSSTTC
T ss_pred HHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHHc---CCCeEEEEccccccCc
Confidence 334566799999999998655544444 34333333 7999999999998654
No 333
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.29 E-value=1.6e-07 Score=76.86 Aligned_cols=40 Identities=23% Similarity=0.441 Sum_probs=34.7
Q ss_pred CceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecc
Q psy9997 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY 100 (330)
Q Consensus 60 ~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~ 100 (330)
.++.+||+++|++|||||||+++|.++.|.. +.||+++.+
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~ 43 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY 43 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence 3578999999999999999999999999876 778876554
No 334
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.23 E-value=8.5e-07 Score=78.80 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=63.6
Q ss_pred cccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHH
Q psy9997 205 RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKL 284 (330)
Q Consensus 205 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 284 (330)
......++++|+++.|+|+.++.+..+. .+.+...+.|.++|+||+|+... . ..+....+
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~~------------~--~~~~~~~~ 74 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNP------MIEDILKNKPRIMLLNKADKADA------------A--VTQQWKEH 74 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHCSSSCEEEEEECGGGSCH------------H--HHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCH------HHHHHHCCCCEEEEEECcccCCH------------H--HHHHHHHH
Confidence 3444567889999999999999887531 12222257999999999999642 0 01222333
Q ss_pred HHHhCCeeEEEEeeccCCCHHHHHHHHHHHh
Q psy9997 285 AKELKAVKYVECSALTQKGLKNVFDEAILAA 315 (330)
Q Consensus 285 ~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~i 315 (330)
.+..+ .+++.+||+++.|++++++.+...+
T Consensus 75 ~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 75 FENQG-IRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHTTT-CCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHhcC-CcEEEEECCCcccHHHHHHHHHHHH
Confidence 33444 6899999999999999998776654
No 335
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.23 E-value=3.4e-07 Score=73.58 Aligned_cols=39 Identities=41% Similarity=0.700 Sum_probs=34.4
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN 99 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~ 99 (330)
|+.+||+++|++|+|||||++++.++.+...+.+|.++.
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~ 39 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF 39 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee
Confidence 568999999999999999999999999888887776543
No 336
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.19 E-value=7.1e-07 Score=84.72 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=40.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++...+ ...+.+|..+.....+.+++.+ +.+||+++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G 281 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAG 281 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCc
Confidence 57999999999999999999997643 4445555555556677788765 47899887
No 337
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.09 E-value=1.4e-07 Score=90.96 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=77.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
+..||+++|+.++|||||+.+|....+...+.+++...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~---------------------------------------- 42 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIG---------------------------------------- 42 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTT----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEe----------------------------------------
Confidence 4679999999999999999999987665554444311100
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGW 161 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~ 161 (330)
...+.. +....+.+|||||++.|..++..+++.+|++++|+|..... ..+|
T Consensus 43 -------------------~~~v~~-~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~---------~~qt 93 (537)
T 3izy_P 43 -------------------AFLVSL-PSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGV---------MKQT 93 (537)
T ss_dssp -------------------SCCBCS-SCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCC---------CHHH
T ss_pred -------------------EEEEEe-CCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCc---------cHHH
Confidence 000000 01225789999999999999999999999999999854321 1111
Q ss_pred ceeeeccCCCcccccccceeeccCC
Q psy9997 162 FWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+........|+.+++||.|+..
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAE 118 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTT
T ss_pred HHHHHHHHHcCCcEEEEEecccccc
Confidence 1122222234567889999999864
No 338
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.07 E-value=1.7e-06 Score=77.93 Aligned_cols=125 Identities=16% Similarity=0.017 Sum_probs=71.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCC--CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEE
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPS--EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCL 79 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl 79 (330)
+.-+|+++|++|||||||+++++...+.. ....|...........+ ....+.+||+++....+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~-------------- 73 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPK-------------- 73 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCC--------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccc--------------
Confidence 35689999999999999999999887742 22222222222223332 14556788887721100
Q ss_pred EEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccC
Q psy9997 80 LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLG 159 (330)
Q Consensus 80 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~ 159 (330)
.|+.. .+.+......+++++|++++|+|....... ....
T Consensus 74 -----------------------------------~~~~l-~~~~~~~~~~~l~~aD~il~VvD~~~~~~~-----~~~~ 112 (308)
T 3iev_A 74 -----------------------------------KSDVL-GHSMVEIAKQSLEEADVILFMIDATEGWRP-----RDEE 112 (308)
T ss_dssp -----------------------------------TTCHH-HHHHHHHHHHHHHHCSEEEEEEETTTBSCH-----HHHH
T ss_pred -----------------------------------cchhH-HHHHHHHHHHHhhcCCEEEEEEeCCCCCCc-----hhHH
Confidence 00000 012234456678899999999986532111 1111
Q ss_pred CcceeeeccCCCcccccccceeeccC
Q psy9997 160 GWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
-|+..+.. ...|+.+++||.|+.
T Consensus 113 ~~~~~l~~---~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 113 IYQNFIKP---LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHTGG---GCCCEEEEEECGGGS
T ss_pred HHHHHHHh---cCCCEEEEEECccCC
Confidence 12222222 356788999999985
No 339
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.02 E-value=1.3e-05 Score=69.16 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=40.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCC--Ccc-cceeEEEEECCEEEEEEEeecCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVF-DNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~--tv~-~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+.+||+++|++|||||||+++++...+.....+ ++. +.....+.+++. .+.+||+++
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG 87 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPG 87 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCC
Confidence 468999999999999999999999888666555 232 333445566664 457898887
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.01 E-value=1.8e-06 Score=69.61 Aligned_cols=39 Identities=31% Similarity=0.622 Sum_probs=33.7
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeec
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN 99 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~ 99 (330)
+..+||+++|++|+|||||+++|.++.+...+.|+.+..
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~ 39 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA 39 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence 467899999999999999999999999888777776543
No 341
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.01 E-value=4e-06 Score=74.06 Aligned_cols=58 Identities=28% Similarity=0.381 Sum_probs=37.8
Q ss_pred eeeEEEEcCCCCChhHHHHH-HHhCCCCCCC-------CCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLIS-YTTNKFPSEY-------VPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~-~~~~~f~~~~-------~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|.+|+|||||+++ +..+.+...+ .+|+...+ ...+..++..+.+.+||++|
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG 74 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCC
Confidence 68999999999999999998 5566666666 56765333 44555566777899999887
No 342
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.94 E-value=5.9e-06 Score=73.03 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=43.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcc-cceeEEEEECCEEEEEEEeecCCc
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~-~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
|+.+||+++|++|||||||+++++...+.....|++. +.....+...+. .+.+||++|.
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~ 60 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGT 60 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCC
Confidence 8899999999999999999999998776544444442 333445555554 4567988873
No 343
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.90 E-value=1.7e-05 Score=69.78 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=39.9
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCC--CCCCCCcccceeEEEEECCEEEEEEEeecCCc
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
+.+||+++|++|||||||+++++.+.+. ..+.++........+..+ ...+.+||+++.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~ 97 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGL 97 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCC
Confidence 4789999999999999999999988763 333333322222233333 456788988873
No 344
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.90 E-value=6.2e-07 Score=82.81 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.3
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++++|.+|+|||||+|++.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999976
No 345
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.88 E-value=1.2e-05 Score=69.76 Aligned_cols=58 Identities=10% Similarity=-0.061 Sum_probs=37.7
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCc---ccceeEEEEECCEEEEEEEeecCC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv---~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
++.+||+|+|.+|||||||+++++...+.....++. ..........++ ..+.+||+++
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG 79 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPD 79 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCC
Confidence 367999999999999999999999877654433222 122233444554 4467899887
No 346
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.87 E-value=6.1e-06 Score=75.92 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=36.4
Q ss_pred eee-EEEEcCCCCChhHHHHHHHhCCCCCC-CCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIK-CVVVGDGAVGKTCLLISYTTNKFPSE-YVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~k-v~~lGd~~vGKtsl~~~~~~~~f~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++ |+++|.+|+|||||++++....+... +..+..+.....+.+++. .+.+||+.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G 235 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVG 235 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCC
Confidence 356 89999999999999999998776322 222333556677888874 457787765
No 347
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.86 E-value=3.4e-06 Score=70.24 Aligned_cols=120 Identities=19% Similarity=0.260 Sum_probs=84.3
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccC--CCCCCCCCceeecceEEEEECCceeeeeeeecCCCcc-ccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTN--KFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-YDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~l~~~~~~~~~~ 137 (330)
+..+||+++|++|||||||+++|.+. .|...+.++..+.+...+.+++..+.+.+|||+|++. ++.+.+.||+.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 45689999999999999999999963 3455555433344566888999999999999999877 67788999999999
Q ss_pred EEEEeccccchhhhcccccccCCcceeeecc-CCCcccccccceeeccC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+++|||.... .++ ..+..|...+... ..+..|+.++|+|.|+.
T Consensus 84 ~i~v~dv~~~--~s~---~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 84 YLIVYSITDR--ASF---EKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEETTCH--HHH---HHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCH--HHH---HHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 9999984431 122 2233444433332 23567889999999984
No 348
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.83 E-value=2.6e-07 Score=85.27 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.7
Q ss_pred EeEEEeecCCCceeEEEEeeccCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.+++++|.+|+|||||+|++.+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999998763
No 349
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.82 E-value=1.1e-06 Score=76.84 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=34.7
Q ss_pred CCceeEeEEEeecC---------CCceeEEEEeecc---CCCCCCCCCce-eecc
Q psy9997 59 RTMQTIKCVVVGDG---------AVGKTCLLISYTT---NKFPSEYVPTV-FDNY 100 (330)
Q Consensus 59 ~~~~~~ki~vvG~~---------~~GKTsl~~~l~~---~~~~~~~~~t~-~~~~ 100 (330)
..+..+||+++|++ |||||||+++|++ ..|...+.||+ +..+
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~ 69 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDF 69 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHH
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccccccc
Confidence 34567999999999 9999999999999 66777888876 4444
No 350
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=5.9e-06 Score=70.12 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=87.1
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCC--CCCCCCCceeecceEEEEECCceeeeeeeecCCCcc-ccccCCCCCCCCce
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-YDRLRPLSYPQTDV 137 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~l~~~~~~~~~~ 137 (330)
...+||+++|++|||||||+++|.+.. |...+.++..+.+...+.+++..+.+.+|||+|++. +..+.+.||+.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 456899999999999999999999644 455554433344566888999999999999999987 67788999999999
Q ss_pred EEEEeccccchhhhcccccccCCcceeeecc-CCCcccccccceeeccC
Q psy9997 138 FLVCFGNMMNIRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITNIN 185 (330)
Q Consensus 138 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 185 (330)
+++||+... ..++ ..+..|...+... ..+..|+.++|||.|+.
T Consensus 115 ~ilVydvt~--~~sf---~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 115 YLIVYSITD--RASF---EKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEETTC--HHHH---HHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred EEEEEECCC--HHHH---HHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 999998442 1122 1233344333322 23467899999999985
No 351
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=5.4e-06 Score=77.46 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.9
Q ss_pred eEeEEEeecCCCceeEEEEeeccCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNKF 88 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~~ 88 (330)
.++++++|++|+|||||++.+.+..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 46799999999999999999988754
No 352
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.74 E-value=1.8e-05 Score=69.40 Aligned_cols=82 Identities=4% Similarity=-0.041 Sum_probs=58.4
Q ss_pred CccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHH
Q psy9997 208 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKE 287 (330)
Q Consensus 208 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 287 (330)
...++++|+++.|.|+.+|.+..+.. . . + . +.|.++|.||+|+.... ..+....+.+.
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~--l-~-l---l-~k~~iivlNK~DL~~~~--------------~~~~~~~~~~~ 73 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYG--V-D-F---S-RKETIILLNKVDIADEK--------------TTKKWVEFFKK 73 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTT--S-C-C---T-TSEEEEEEECGGGSCHH--------------HHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChH--H-H-h---c-CCCcEEEEECccCCCHH--------------HHHHHHHHHHH
Confidence 34577899999999999998776532 1 1 1 1 78999999999997530 11222334444
Q ss_pred hCCeeEEEEeeccCCCHHHHHHHHHH
Q psy9997 288 LKAVKYVECSALTQKGLKNVFDEAIL 313 (330)
Q Consensus 288 ~~~~~~~e~Sa~~~~~v~~~f~~l~~ 313 (330)
.+ .++ .+||+++.|++++++.+..
T Consensus 74 ~g-~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QG-KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred cC-CeE-EEECCCCcCHHHHHHHHHH
Confidence 45 577 9999999999998876543
No 353
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.73 E-value=5.9e-06 Score=78.95 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=47.4
Q ss_pred eeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 112 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 112 ~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.+|||||++.|..++..+++.+|++++|+|..... ..++...+........|+.+++||.|+..
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~---------~~qT~e~l~~~~~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV---------MPQTIEAIQHAKAAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS---------CTTTHHHHHHHHHTTCCEEEEEECSSSST
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc---------cHHHHHHHHHHHhcCceEEEEEEeccccc
Confidence 5789999999999999999999999999999744321 11222222222234567888999999864
No 354
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.71 E-value=2.3e-05 Score=72.02 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=33.8
Q ss_pred eeeEEEEcCCCCChhHHHHHH-HhCCCCCCCC--------CCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISY-TTNKFPSEYV--------PTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~-~~~~f~~~~~--------~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|++|+|||||+.++ ..+.|...+. +|+...+ ...+..++..+.+.+||+++
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG 104 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPG 104 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC---
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecc
Confidence 589999999999999999995 4556655543 4554332 33444567778889998877
No 355
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.71 E-value=1.9e-05 Score=66.92 Aligned_cols=58 Identities=12% Similarity=-0.051 Sum_probs=37.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEEC-CEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIG-GEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~-~~~~~~~~~~~~~ 60 (330)
.+||+++|++|||||||+++++.+.+.....++.+... .....+. .....+.+||+++
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 88 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPG 88 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCC
Confidence 57999999999999999999998863222222222111 1223333 3345677888876
No 356
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.68 E-value=2.8e-05 Score=71.34 Aligned_cols=56 Identities=23% Similarity=0.131 Sum_probs=35.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC-CCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.++|+++|.+|||||||++++....+... +..+..+.....+..+ ...+.+||+++
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G 223 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPG 223 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCC
Confidence 57899999999999999999998764321 2222111112222223 34567787776
No 357
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.66 E-value=3.4e-05 Score=70.62 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=36.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC-CCCC-CCcccceeEEEEECCE---------------EEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP-SEYV-PTVFDNYAVTVMIGGE---------------PYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~-~tv~~~~~~~~~~~~~---------------~~~~~~~~~~~ 60 (330)
.+||+++|.+|||||||+++++...+. .+++ +|+..+.. .+.+.+. +..+.+||+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 75 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAG 75 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCC
Confidence 379999999999999999999987743 2333 24433332 2334432 25678888887
No 358
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.63 E-value=5.8e-06 Score=75.37 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=34.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCC-CCCC-CCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFP-SEYV-PTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~-~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
+|+++|.++||||||++++....+. ..|. +|+. .....+.+++ ...+.+||+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~-p~~g~v~~~~-~~~~~l~DtPG 215 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLV-PNLGMVETDD-GRSFVMADLPG 215 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCC-CCEEEEECSS-SCEEEEEEHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccC-ceEEEEEeCC-CceEEEecCCC
Confidence 6889999999999999999876532 2233 3332 2222344443 13567787776
No 359
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.62 E-value=2.2e-05 Score=70.39 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=63.3
Q ss_pred cccccccCccccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH
Q psy9997 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ 280 (330)
Q Consensus 201 e~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 280 (330)
++.+.+.+..+.++|.+++|.|+.+|.+-.+..+.++..... .++|.++|.||+|+..+.. .....++
T Consensus 74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~----------~~~~~~~ 141 (307)
T 1t9h_A 74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD----------TEDTIQA 141 (307)
T ss_dssp CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH----------HHHHHHH
T ss_pred chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhh----------hHHHHHH
Confidence 445555556789999999999999776554433244433322 4789999999999976410 0000122
Q ss_pred HHHHHHHhCCeeEEEEeeccCCCHHHHHH
Q psy9997 281 GEKLAKELKAVKYVECSALTQKGLKNVFD 309 (330)
Q Consensus 281 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 309 (330)
..++-+..| .+++.+||.++.|+++++.
T Consensus 142 ~~~~y~~~g-~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 142 YAEDYRNIG-YDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHHHHHT-CCEEECCHHHHTTCTTTGG
T ss_pred HHHHHHhCC-CeEEEEecCCCCCHHHHHh
Confidence 333333445 6899999999999887765
No 360
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.59 E-value=3.8e-05 Score=64.32 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=30.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
..+|+++|.+|||||||+++++...|...+.++.+... ...+.+++ .+.+||+++
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G 81 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPG 81 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcC
Confidence 57899999999999999999998776555566665433 22333332 345666655
No 361
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.57 E-value=4.8e-05 Score=70.94 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=47.7
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+.+|||||++.|...+..+++.+|++++|+|...... ..+...|+....... ..++.++.||.|+..
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~-----~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP-----QPQTREHFVALGIIG--VKNLIIVQNKVDVVS 143 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS-----CHHHHHHHHHHHHHT--CCCEEEEEECGGGSC
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC-----cHHHHHHHHHHHHcC--CCCEEEEEECccccc
Confidence 3678999999999999999999999999999998554210 111112222221111 135788899999854
No 362
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.54 E-value=2.1e-05 Score=74.17 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=48.0
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-hhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-IRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
....+.+|||||++.|...+..+++.+|++++|+|.... +.....|..+.......... ....++.+++||.|+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEECGGGSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEcccCCC
Confidence 345789999999999999999999999999999986542 11111122221111111111 11124678899999854
No 363
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.52 E-value=0.00021 Score=66.44 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+||+++|.++||||||+++++...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999765
No 364
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.52 E-value=6.6e-05 Score=71.54 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=46.5
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC--CCCCCCCCcccceeEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~--f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~ 60 (330)
.+||+++|.++||||||++++.... +...+..|..+.....+.+++.+ +.+||+++
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG 300 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAG 300 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCC
Confidence 3899999999999999999999875 45666667677777888888765 68999998
No 365
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.48 E-value=3.1e-05 Score=65.77 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=31.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCccc
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD 38 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~ 38 (330)
+..||+++|++|||||||+.+|+...|...+.+++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~ 73 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAG 73 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEEC
Confidence 3589999999999999999999998887666666643
No 366
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.45 E-value=0.00015 Score=67.50 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=39.2
Q ss_pred CCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHH----HHHHHH----HhC--CeeEEEEee--ccCCCHHHHHHHHHH
Q psy9997 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQ----GEKLAK----ELK--AVKYVECSA--LTQKGLKNVFDEAIL 313 (330)
Q Consensus 246 ~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~----~~~~~~----~~~--~~~~~e~Sa--~~~~~v~~~f~~l~~ 313 (330)
+.|+++|.||.|+.--++... .......++ .+.+.. +.+ ....+.+|+ ..+.|++++.+.+..
T Consensus 175 ~~p~~lV~tkpdlllLDEPts-----gLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADG-----EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTT-----CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred CCCeEEEEecCcccccCcccc-----cCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 689999999999852111000 112222333 333331 211 235788999 777789999999887
Q ss_pred Hhc
Q psy9997 314 AAL 316 (330)
Q Consensus 314 ~i~ 316 (330)
.+-
T Consensus 250 ~Lp 252 (413)
T 1tq4_A 250 DLP 252 (413)
T ss_dssp HSC
T ss_pred hCc
Confidence 763
No 367
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.45 E-value=1.9e-05 Score=75.57 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=48.0
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcE-EEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCe
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPF-LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAV 291 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 291 (330)
.+|.+++|.|.+.... .+. ....+.. .+|+ .+|.||.|..... . .+.......+ .
T Consensus 213 ~pd~vllVvDa~~g~~--~~~--~a~~~~~---~~~i~gvVlNK~D~~~~~------------g----~~l~~~~~~g-~ 268 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CEA--QAKAFKD---KVDVASVIVTKLDGHAKG------------G----GALSAVAATK-S 268 (504)
T ss_dssp CCSEEEEEEETTCCTT--HHH--HHHHHHH---HHCCCCEEEECTTSCCCC------------T----HHHHHHHHHC-C
T ss_pred cCceEEEEEecccccc--HHH--HHHHHHh---hcCceEEEEeCCccccch------------H----HHHHHHHHhC-C
Confidence 6899999999986533 221 2222322 2675 8999999986431 1 1122222332 2
Q ss_pred e------------------EEEEeeccCCC-HHHHHHHHHHH
Q psy9997 292 K------------------YVECSALTQKG-LKNVFDEAILA 314 (330)
Q Consensus 292 ~------------------~~e~Sa~~~~~-v~~~f~~l~~~ 314 (330)
| .+.+||..|.| ++++++.+...
T Consensus 269 PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 269 PIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 2 23479999999 99999888765
No 368
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.45 E-value=9.9e-05 Score=64.95 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.0
Q ss_pred eEeEEEeecCCCceeEEEEeeccCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
.++++++|++|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998743
No 369
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.45 E-value=3.9e-05 Score=75.00 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=47.1
Q ss_pred eeeeeecCCCccccccCCCCCCCCceEEEEeccccch-hhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 112 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI-RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 112 ~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
.+.+|||||++.|..++..+++.+|++++|+|..... .+...... .......|+.+++||.|+..
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----------~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN----------ILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----------HHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----------HHHHcCCeEEEEeccccccc
Confidence 4889999999999999999999999999999865421 11111101 11124567889999999864
No 370
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.44 E-value=8.5e-05 Score=70.04 Aligned_cols=73 Identities=12% Similarity=0.010 Sum_probs=46.8
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhh-hcccccccCCcceeeeccCCCccc-ccccceeeccC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRR-SVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNIN 185 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~ 185 (330)
...+.+|||||+++|...+..+++.+|++++|+|....... .+. ...++...+........+ +.++.||.|+.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~---~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFE---KGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccC---CCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 45789999999999999999999999999999985532210 000 001111111111122344 67889999984
No 371
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.41 E-value=0.00016 Score=64.56 Aligned_cols=27 Identities=30% Similarity=0.272 Sum_probs=24.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
+..+|+++|.+|||||||+++++...+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 456899999999999999999998765
No 372
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.39 E-value=2.1e-05 Score=68.92 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=34.4
Q ss_pred EeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecceE-EEEECCceeeeeeeecCCC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~ 121 (330)
++++++|.+|+|||||+|++.+..... ..++.|..... .+..+ ..+.+|||||.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~---~~~~l~DtpG~ 154 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLE---NGVKILDTPGI 154 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEE
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeC---CCEEEEECCCc
Confidence 699999999999999999999876422 22222322221 22222 36889999998
No 373
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.38 E-value=8.2e-05 Score=70.73 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=38.0
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchh-hhcccccccCCcceeeeccCCCccc-ccccceeeccC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIR-RSVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNIN 185 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~ 185 (330)
...+.+|||||++.|...+..+++.+|++++|+|...... .++. ...+|...+........+ +.+++||.|+.
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~---~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE---RGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTS---TTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccC---CCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 3578999999999999999999999999999998654321 1111 112222222222223344 67889999984
No 374
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.36 E-value=8.5e-06 Score=73.01 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCC-CCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce
Q psy9997 18 CLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 96 (330)
Q Consensus 18 sl~~~~~~~~f~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~ 96 (330)
||+.||+.+.|. ..|.||+++.+...+..++ .+.+|++ +++|
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--------------------------qer~-------- 74 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--------------------------LHRK-------- 74 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--------------------------CCCS--------
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--------------------------cccc--------
Confidence 799999999999 8999999988764432222 6778853 1222
Q ss_pred eecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCccccc
Q psy9997 97 FDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLH 176 (330)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (330)
+.+++.||+++|++++|||..... .....+..|+..+.. ...|+.
T Consensus 75 ----------------------------~~l~~~~~~~ad~vilV~D~~~~~----~s~~~l~~~l~~~~~---~~~pii 119 (301)
T 1u0l_A 75 ----------------------------NLLTKPHVANVDQVILVVTVKMPE----TSTYIIDKFLVLAEK---NELETV 119 (301)
T ss_dssp ----------------------------CEETTTTEESCCEEEEEECSSTTC----CCHHHHHHHHHHHHH---TTCEEE
T ss_pred ----------------------------ceeeccccccCCEEEEEEeCCCCC----CCHHHHHHHHHHHHH---CCCCEE
Confidence 456778999999999999855321 112345566654432 467889
Q ss_pred ccceeeccCCC
Q psy9997 177 TLGFITNINPG 187 (330)
Q Consensus 177 ~~g~~~~~~~~ 187 (330)
+++||.|+...
T Consensus 120 lv~NK~DL~~~ 130 (301)
T 1u0l_A 120 MVINKMDLYDE 130 (301)
T ss_dssp EEECCGGGCCH
T ss_pred EEEeHHHcCCc
Confidence 99999999643
No 375
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.32 E-value=0.00014 Score=69.50 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=45.0
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccccch-hhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI-RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..+.+|||||++.|...+..+++.+|++++|+|..... .+..+ ++..+. ....+..++.||.|+..
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e-------~l~~~~---~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGE-------HMLILD---HFNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHH-------HHHHHH---HTTCCBCEEEECTTSSC
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHH-------HHHHHH---HcCCCEEEEEECCCccc
Confidence 57899999999999888999999999999999855321 11111 111111 12355677888888853
No 376
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.00037 Score=68.42 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=33.9
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
....+.+|||||+++|...+..+++.+|++++|+|...
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 34678999999999999999999999999999998654
No 377
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.27 E-value=2.2e-05 Score=71.78 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=53.6
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-----hhhhcccccccCCcceeeecc-CCCcccccccceee
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-----IRRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFIT 182 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 182 (330)
..+.+++|||+||++++.++..||++++++|+|||.+.- .........+...|+..+... ..+..|+.++|||.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 567899999999999999999999999999999985410 001122223344455444332 34678899999999
Q ss_pred ccC
Q psy9997 183 NIN 185 (330)
Q Consensus 183 ~~~ 185 (330)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 984
No 378
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.26 E-value=5.5e-05 Score=67.05 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=34.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~ 121 (330)
..++++++|.+|||||||+|++.+...... .+..+.... ..+..+ ..+.++||||.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~ 175 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVG---KELELLDTPGI 175 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeC---CCEEEEECcCc
Confidence 458999999999999999999998763111 111111111 122222 25789999998
No 379
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.25 E-value=0.00047 Score=64.31 Aligned_cols=68 Identities=9% Similarity=-0.010 Sum_probs=45.3
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEeccccch--hhhcccccccCCcceeeeccCCCcccccccceeeccCCC
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI--RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPG 187 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 187 (330)
..+.+|||||++.|...+....+.+|++++|+|..... .+... ++..| ... ...++.++.||.|+...
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e---~l~~~----~~l--~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE---HLMAL----EIL--GIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH---HHHHH----HHT--TCCCEEEEEECTTSSCT
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH---HHHHH----HHc--CCCeEEEEEEccCCCCH
Confidence 57899999999999888888888999999999865321 11111 11111 111 11357788999998643
No 380
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.24 E-value=0.00029 Score=65.83 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=33.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC-C-------CCCcccce-eEEEEECCEEEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE-Y-------VPTVFDNY-AVTVMIGGEPYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~-~-------~~tv~~~~-~~~~~~~~~~~~~~~~~~~~ 60 (330)
+++|+++|++|||||||+.+++...+... + .+|+.... ...++..+....+.+|++.+
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechh
Confidence 57899999999999999999998877322 1 12222111 11122234445677787766
No 381
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.23 E-value=0.00019 Score=67.61 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=46.1
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
....+.+|||||++.|...+..+++.+|++++|+|...... .+...|+...... ...++.+++||.|+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~------~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ------TQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC------HHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc------HHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 34578999999999999888899999999999998553210 0111121111111 1124677888988854
No 382
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.20 E-value=3.9e-05 Score=62.21 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=86.5
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCceeecce-EEEEECCceeeeeeeecCCCccccccCCCCCCCCceEE
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL 139 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i 139 (330)
.+.+||+++|++|+|||||+++|.++.+...+.++....+. ..+..++. .+.+|||+|++++..++..+++.+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 35689999999999999999999999998887777765553 36666664 4679999999999999999999999999
Q ss_pred EEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 140 VCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+|||...... ..++..+.....+..|+.+++||.|+..
T Consensus 84 ~v~d~~~~~~---------~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 84 LVVAADDGVM---------PQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp EEEETTCCCC---------HHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred EEEECCCCCc---------HHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 9998443110 1111111122234567899999999854
No 383
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.19 E-value=0.00024 Score=67.29 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=33.8
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
....+.+|||||++.|...+..+++.+|++++|+|...
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence 34578999999999999999999999999999998654
No 384
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.18 E-value=0.00024 Score=72.39 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 107 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 107 ~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
++..+.+++|||||+..|...+..+++.+|++++|+|......- . ...-|.. ......++.+++||.|+.
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~--q---t~~~~~~----~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCV--Q---TETVLRQ----ALGERIKPVVVINKVDRA 163 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCH--H---HHHHHHH----HHHTTCEEEEEEECHHHH
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCH--H---HHHHHHH----HHHcCCCeEEEEECCCcc
Confidence 34567899999999999999999999999999999986542110 0 0011111 112345677889998874
No 385
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.14 E-value=0.00013 Score=65.95 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=54.3
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-----hhhhcccccccCCcceeeec-cCCCcccccccceee
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-----IRRSVDWNRKLGGWFWFIST-EHSPPMKLHTLGFIT 182 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 182 (330)
..+.+++|||+||+++++++.+||++++++|+||+-+.- .........+...|+..+.. ......++.++|||.
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 357899999999999999999999999999999964310 01112222233344444433 234678899999999
Q ss_pred ccC
Q psy9997 183 NIN 185 (330)
Q Consensus 183 ~~~ 185 (330)
|+.
T Consensus 245 DL~ 247 (327)
T 3ohm_A 245 DLL 247 (327)
T ss_dssp HHH
T ss_pred hhh
Confidence 984
No 386
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.13 E-value=1.5e-05 Score=71.37 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=30.8
Q ss_pred eEeEEEeecCCCceeEEEEeeccC-CCCCCC--------CCceeecc-eEEEEECCceeeeeeeecCCC
Q psy9997 63 TIKCVVVGDGAVGKTCLLISYTTN-KFPSEY--------VPTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 121 (330)
Q Consensus 63 ~~ki~vvG~~~~GKTsl~~~l~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~ 121 (330)
.++|+++|++|+|||||++++.+. .+...+ .++..... ......++....+.+||++|+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence 478899999999999999998765 444433 12222111 112222445667888888887
No 387
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.09 E-value=0.00017 Score=71.99 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=41.4
Q ss_pred eeeeeeecCCCcc---ccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 111 YTLGLFDTAGQED---YDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 111 ~~l~i~Dt~g~~~---~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..+.+|||||... .......|++++|++++|+|........ ...-|...+ .....++.++.||.|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~-----e~~~l~~~l---~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLG-----ERRYLENYI---KGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHH-----HHHHHHHHT---TTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchh-----HHHHHHHHH---HhhCCCEEEEEECcccc
Confidence 3689999999654 3455678899999999999854432111 111111111 11134578889999874
No 388
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.08 E-value=0.00028 Score=68.04 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=48.0
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceee-eccCCCcccccccceeeccCC
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFI-STEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 186 (330)
....+.+|||||++.|......+++.+|++++|+|...... .|.... ........|+.+++||.|+..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~----------~~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVE----------DRTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSC----------HHHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccch----------HHHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 45678999999999999888899999999999998654211 111111 111223567888999999853
No 389
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.02 E-value=0.00034 Score=65.00 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=33.1
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEecccc
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMM 146 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~ 146 (330)
....+.+|||||++.|...+..+++.+|++++|+|...
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND 101 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC
Confidence 34578899999999998889999999999999998554
No 390
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.97 E-value=0.00044 Score=64.39 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=47.2
Q ss_pred CceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCccc-ccccceeeccCC
Q psy9997 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNINP 186 (330)
Q Consensus 108 ~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 186 (330)
.....+.+|||||++.|...+..+++.+|++++|+|...... .+...|+..... ...+ +.++.||.|+..
T Consensus 72 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~------~qt~~~l~~~~~---~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM------PQTREHILLARQ---VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC------HHHHHHHHHHHH---TTCCCEEEEEECGGGCC
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc------HHHHHHHHHHHH---cCCCEEEEEEECccccC
Confidence 344578899999999999999999999999999998543211 111122222211 2344 567899998853
No 391
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=96.95 E-value=0.00014 Score=65.99 Aligned_cols=77 Identities=12% Similarity=-0.041 Sum_probs=54.8
Q ss_pred ceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccc-----hhhhcccccccCCcceeeec-cCCCcccccccceee
Q psy9997 109 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMN-----IRRSVDWNRKLGGWFWFIST-EHSPPMKLHTLGFIT 182 (330)
Q Consensus 109 ~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 182 (330)
..+.+++||++||++++.++..||++++++|+|||.+.- .........+...|+..+.. ......++.++|||.
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 457899999999999999999999999999999986510 00112222233344444433 234678899999999
Q ss_pred ccC
Q psy9997 183 NIN 185 (330)
Q Consensus 183 ~~~ 185 (330)
|+.
T Consensus 239 DL~ 241 (340)
T 4fid_A 239 DLF 241 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 984
No 392
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.92 E-value=0.00072 Score=62.71 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=57.1
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccch-----hhhcccccccCCcceeeecc-CCCcccccccceeec
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNI-----RRSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITN 183 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 183 (330)
.+.+++|||+||++++.++..||++++++|+|||.+.-. ........+...|+..+... ..+..++.++|||.|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 378999999999999999999999999999999855411 01122334455566655443 446788999999999
Q ss_pred cC
Q psy9997 184 IN 185 (330)
Q Consensus 184 ~~ 185 (330)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 84
No 393
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.86 E-value=0.0014 Score=59.71 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=53.9
Q ss_pred cccCCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHH---
Q psy9997 210 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAK--- 286 (330)
Q Consensus 210 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 286 (330)
...++|.+++|... +|..-.+..+.|+..... .++|.++|.||+|+..+. ..+..++|..
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~--------------~~~~~~~~~~~y~ 189 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDE--------------GMDFVNEQMDIYR 189 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHH--------------HHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCch--------------hHHHHHHHHHHHH
Confidence 46789999988665 454433322244433322 377889999999997531 1111333333
Q ss_pred HhCCeeEEEEeeccCCCHHHHHHH
Q psy9997 287 ELKAVKYVECSALTQKGLKNVFDE 310 (330)
Q Consensus 287 ~~~~~~~~e~Sa~~~~~v~~~f~~ 310 (330)
..| .+++.+||+++.|++++...
T Consensus 190 ~~G-~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 190 NIG-YRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp TTT-CCEEECBTTTTBTHHHHHHH
T ss_pred hCC-CcEEEEecCCCcCHHHHHHh
Confidence 445 68999999999999988764
No 394
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.82 E-value=0.00026 Score=65.20 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=30.0
Q ss_pred eeeeeeecCCCccccccCCCCCCCCceEEEEec
Q psy9997 111 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFG 143 (330)
Q Consensus 111 ~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~ 143 (330)
..+.+|||||+++|...+..+++.+|++++|+|
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 458999999999998888888899999999998
No 395
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.81 E-value=0.0004 Score=67.54 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=39.9
Q ss_pred ceeEeEEEeecCCCceeEEEEeeccCCCCCCCCCce-eecceEEE---EE-CCceeeeeeeecCCCcc
Q psy9997 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTV---MI-GGEPYTLGLFDTAGQED 123 (330)
Q Consensus 61 ~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~-~~~~~~~~---~~-~~~~~~l~i~Dt~g~~~ 123 (330)
...++|+|+|.+|+|||||+|++.+.........|. +....... .. ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456889999999999999999999876322222222 11111111 11 23445688999999854
No 396
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.81 E-value=0.00013 Score=70.42 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=47.1
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
...+.+|||||++.|......+++.+|++++|+|....... ....-| ........|+.++.||.|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~-----~t~~~~----~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEP-----RTIKLM----EVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHH----HHHHTTTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCH-----HHHHHH----HHHHHcCCCEEEEEeCCCCc
Confidence 46789999999999999999999999999999986542110 000001 11122356788889999885
No 397
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.80 E-value=0.00051 Score=68.15 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=76.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEEe
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLIS 82 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~~ 82 (330)
..+|+++|++|+|||||+.+++..........++.+. ..
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g---------~~-------------------------------- 47 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---------TT-------------------------------- 47 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---------CC--------------------------------
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCC---------cc--------------------------------
Confidence 4689999999999999999999765543333443100 00
Q ss_pred eccCCCCCCCCC---ceeecc-eEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 83 YTTNKFPSEYVP---TVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 83 l~~~~~~~~~~~---t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
...+.+ ..+..+ .....+....+.+++|||+|++.|......+++.+|++++++|....... ..
T Consensus 48 ------~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~------qt 115 (665)
T 2dy1_A 48 ------TTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQV------GT 115 (665)
T ss_dssp ------SSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCH------HH
T ss_pred ------cccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccch------hH
Confidence 000000 000111 11222333467889999999999999999999999999999984432110 01
Q ss_pred CCcceeeeccCCCcccccccceeeccC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..++.... ....++.+++||.|+.
T Consensus 116 ~~~~~~~~---~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAE---RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHH---HTTCCEEEEEECGGGC
T ss_pred HHHHHHHH---HccCCEEEEecCCchh
Confidence 11111111 1245677889999885
No 398
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.72 E-value=0.0012 Score=61.01 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=34.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCCCC-CcccceeEEEEECCE---------------EEEEEEeecCCc
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP-TVFDNYAVTVMIGGE---------------PYTLGLNFARTM 61 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~-tv~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 61 (330)
.+||.++|.+|||||||++++....+.....| |-.+.....+.+.+. +..+.+||+++.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 57899999999999999999998765333222 212222334444432 345788888873
No 399
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.68 E-value=0.00024 Score=64.04 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=79.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCC---CCCCCcccceeEEEEECCEEEEEEEeecCCceeEeEEEeecCCCceeEEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPS---EYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLI 81 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~---~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKTsl~~ 81 (330)
||+++|++|||||||+.++.++.++. .+.||++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig-------------------------------------------- 36 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSN-------------------------------------------- 36 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCS--------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeee--------------------------------------------
Confidence 89999999999999999887654432 1334443
Q ss_pred eeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccc---cCCCCCCCCceEEEEeccccchhhhccccccc
Q psy9997 82 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR---LRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKL 158 (330)
Q Consensus 82 ~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 158 (330)
..+.. + +..+.++||||+||++|+. +++.|||+++++++|||..... ......+
T Consensus 37 ----------------~~~~~---v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~---~~~~~~l 93 (331)
T 3r7w_B 37 ----------------PSLEH---F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEY---INAITNL 93 (331)
T ss_dssp ----------------CCCEE---E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCT---THHHHHH
T ss_pred ----------------eeeEE---E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchH---HHHHHHH
Confidence 32221 1 2346799999999999974 4789999999999999966542 2222223
Q ss_pred CCcceeeeccCCCcccccccceeeccCC
Q psy9997 159 GGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
..|+.... ...+..|+.++|+|.|+..
T Consensus 94 ~~~l~~~~-~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 94 AMIIEYAY-KVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp HHHHHHHH-HHCTTCEEEEECCCCCSSC
T ss_pred HHHHHHHh-hcCCCCcEEEEEECcccCc
Confidence 33443332 2356789999999999964
No 400
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.67 E-value=0.0015 Score=59.85 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+||.++|.+|||||||+++++...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998764
No 401
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.58 E-value=0.0016 Score=57.60 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSE 31 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~ 31 (330)
..||+++|++|||||||+++++...|.+.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~ 54 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPR 54 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCC
Confidence 56999999999999999999999888543
No 402
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.53 E-value=0.00029 Score=57.91 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=94.3
Q ss_pred CCceeEeEEEeecCCCceeEEEEeeccCCCCCCC-----------CCceeecceE-EE-EECCceeeeeeeecCCCcccc
Q psy9997 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY-----------VPTVFDNYAV-TV-MIGGEPYTLGLFDTAGQEDYD 125 (330)
Q Consensus 59 ~~~~~~ki~vvG~~~~GKTsl~~~l~~~~~~~~~-----------~~t~~~~~~~-~~-~~~~~~~~l~i~Dt~g~~~~~ 125 (330)
.....+||+++|++|||||||+ +++.+.+...+ .||++..+.. .+ .+++..+.+.+|||+|++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3456799999999999999999 56666666664 4566655543 44 677888999999999999999
Q ss_pred ccCCCCCCCCceEEEEeccccch-hhhcccccccCCcceeeeccCCCcccccccceeeccC
Q psy9997 126 RLRPLSYPQTDVFLVCFGNMMNI-RRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 126 ~l~~~~~~~~~~~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
.++..|++++|++++|||..... .........+..|+..+ ....+..|+.++|||.|+.
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-GLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-TCCTTSSCEEEEEECTTST
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-ccccCCCCEEEEEEchhcc
Confidence 99999999999999999866321 11222334455666655 2345778899999999985
No 403
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.52 E-value=0.0024 Score=63.65 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=48.2
Q ss_pred CceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 108 ~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
+..+.+.+|||||+..|...+..+++.+|++++|+|....... . ...-| . .......+..++.||.|+..
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~--q---t~~~~-~---~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP--Q---SETVW-R---QANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcH--H---HHHHH-H---HHHHcCCCEEEEEeCCCccc
Confidence 4567899999999999998999999999999999986543110 0 00011 1 11123456778899988753
No 404
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.45 E-value=0.00093 Score=69.34 Aligned_cols=72 Identities=8% Similarity=-0.026 Sum_probs=48.0
Q ss_pred ECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCccc-ccccceeecc
Q psy9997 106 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMK-LHTLGFITNI 184 (330)
Q Consensus 106 ~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~ 184 (330)
++.....+.+|||||++.|...+..+++.+|++|+|+|...... .+..+|+..... ...| +.+++||.|+
T Consensus 354 f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~------~QTrEhL~ll~~---lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM------PQTREHILLGRQ---VGVPYIIVFLNKCDM 424 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC------TTHHHHHHHHHH---HTCSCEEEEEECCTT
T ss_pred EcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc------HHHHHHHHHHHH---cCCCeEEEEEeeccc
Confidence 33445678999999999999999999999999999998543210 011112211111 2344 5678899988
Q ss_pred CC
Q psy9997 185 NP 186 (330)
Q Consensus 185 ~~ 186 (330)
..
T Consensus 425 v~ 426 (1289)
T 3avx_A 425 VD 426 (1289)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 405
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.43 E-value=0.00087 Score=66.76 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=47.5
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+.+|||+|+..|......+++.+|++++|+|....... ....-|. .. .....|+.++.||.|+..
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~-----~t~~~~~-~~---~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP-----QSETVWR-QA---EKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCH-----HHHHHHH-HH---HHTTCCEEEEEECTTSTT
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcch-----hhHHHHH-HH---HHcCCCEEEEEECCCccc
Confidence 46789999999999999999999999999999986543210 0001111 11 113567788899999854
No 406
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.35 E-value=0.0023 Score=58.37 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=55.4
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchh-----hhcccccccCCcceeeecc-CCCcccccccceeec
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIR-----RSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITN 183 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 183 (330)
.+.+++|||+||++++.++..||++++++|+|||.+.... .......+...|+..+... .....|+.++|||.|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5789999999999999999999999999999998554210 0022223344455544432 346788999999999
Q ss_pred cC
Q psy9997 184 IN 185 (330)
Q Consensus 184 ~~ 185 (330)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 84
No 407
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.28 E-value=0.0011 Score=62.13 Aligned_cols=140 Identities=14% Similarity=0.026 Sum_probs=0.0
Q ss_pred EEEeecCCCceeEEEEeecc-----------------------------------------CCCCCCCCCceeecceEEE
Q psy9997 66 CVVVGDGAVGKTCLLISYTT-----------------------------------------NKFPSEYVPTVFDNYAVTV 104 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~-----------------------------------------~~~~~~~~~t~~~~~~~~~ 104 (330)
|+++|.+|+||||++.++.. ..-.............
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~--- 178 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF--- 178 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT---
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh---
Q ss_pred EECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeecc
Q psy9997 105 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNI 184 (330)
Q Consensus 105 ~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 184 (330)
..+.+.|+||+|.....
T Consensus 179 ----~~~D~vIIDT~G~~~~~----------------------------------------------------------- 195 (432)
T 2v3c_C 179 ----KKADVLIIDTAGRHKEE----------------------------------------------------------- 195 (432)
T ss_dssp ----SSCSEEEEECCCSCSSH-----------------------------------------------------------
T ss_pred ----hCCCEEEEcCCCCcccc-----------------------------------------------------------
Q ss_pred CCCccccccccccccccccccccCcccc--CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCC-c-EEEEEeccCCCC
Q psy9997 185 NPGWVRDRSLFDTAGQEDYDRLRPLSYP--QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-P-FLLVGTQIDLRE 260 (330)
Q Consensus 185 ~~~~~~~~~~~D~~g~e~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~-p-iilV~nK~Dl~~ 260 (330)
............ .+|.+++|.|.+......... ....... | ..+|.||.|...
T Consensus 196 ----------------~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~-------~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 196 ----------------KGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQA-------KAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp ----------------HHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHH-------HHHHTTSCSCEEEEEECSSSCS
T ss_pred ----------------HHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHH-------HHHhhcccCCeEEEEeCCCCcc
Q ss_pred CchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE------------------eeccCCC-HHHHHHHH
Q psy9997 261 DAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC------------------SALTQKG-LKNVFDEA 311 (330)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~------------------Sa~~~~~-v~~~f~~l 311 (330)
....+..+....+ .++..+ |+..|.| +..+++.+
T Consensus 253 ----------------~~g~~l~~~~~~~-~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~ 305 (432)
T 2v3c_C 253 ----------------KGGGALSAVAETK-APIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKA 305 (432)
T ss_dssp ----------------TTHHHHHHHHHSS-CCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTT
T ss_pred ----------------chHHHHHHHHHHC-CCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHH
No 408
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.27 E-value=0.0055 Score=57.02 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=28.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHH---hCCCCCCCCC--Ccccce
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYT---TNKFPSEYVP--TVFDNY 40 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~---~~~f~~~~~~--tv~~~~ 40 (330)
+.++|+++|+.++|||||+.++. .+.+..++.+ |+...|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~ 52 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGF 52 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEee
Confidence 35899999999999999999998 3344444445 654444
No 409
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.22 E-value=0.0013 Score=61.63 Aligned_cols=69 Identities=4% Similarity=-0.091 Sum_probs=40.8
Q ss_pred CCCEEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCee
Q psy9997 213 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVK 292 (330)
Q Consensus 213 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 292 (330)
.+|.+++|.|.+....-.+.. ..+.+ .-.+..+|.||.|.... ...+.......+ .|
T Consensus 212 ~pd~vlLVvDA~~gq~a~~~a----~~f~~--~~~i~gVIlTKlD~~~~----------------gG~~ls~~~~~g-~P 268 (443)
T 3dm5_A 212 HPHEVILVIDGTIGQQAYNQA----LAFKE--ATPIGSIIVTKLDGSAK----------------GGGALSAVAATG-AP 268 (443)
T ss_dssp CCSEEEEEEEGGGGGGHHHHH----HHHHH--SCTTEEEEEECCSSCSS----------------HHHHHHHHHTTC-CC
T ss_pred cCceEEEEEeCCCchhHHHHH----HHHHh--hCCCeEEEEECCCCccc----------------ccHHHHHHHHHC-CC
Confidence 578999999987643322221 22222 12466799999998643 123445555565 67
Q ss_pred EEEEeeccCCCHHH
Q psy9997 293 YVECSALTQKGLKN 306 (330)
Q Consensus 293 ~~e~Sa~~~~~v~~ 306 (330)
+..++. |+++++
T Consensus 269 I~fig~--Ge~vdd 280 (443)
T 3dm5_A 269 IKFIGT--GEKIDD 280 (443)
T ss_dssp EEEEEC--SSSTTC
T ss_pred EEEEEc--CCChHH
Confidence 776665 665543
No 410
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.16 E-value=0.0045 Score=56.66 Aligned_cols=76 Identities=11% Similarity=0.001 Sum_probs=47.5
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchh-----hhcccccccCCcceeeecc-CCCcccccccceeec
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIR-----RSVDWNRKLGGWFWFISTE-HSPPMKLHTLGFITN 183 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 183 (330)
.+.+.+|||+||++++.++..||++++++|+|||.+.-.. .......+...|+..+... .....|+.++|||.|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4789999999999999999999999999999998654110 0011222333444444332 346788999999999
Q ss_pred cC
Q psy9997 184 IN 185 (330)
Q Consensus 184 ~~ 185 (330)
+.
T Consensus 280 L~ 281 (362)
T 1zcb_A 280 LL 281 (362)
T ss_dssp HH
T ss_pred hh
Confidence 84
No 411
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.13 E-value=0.0049 Score=61.36 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=47.0
Q ss_pred eeeeeeeecCCCccccccCCCCCCCCceEEEEeccccchhhhcccccccCCcceeeeccCCCcccccccceeeccCC
Q psy9997 110 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINP 186 (330)
Q Consensus 110 ~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 186 (330)
...+.+|||+|+..|......+++.+|++++|+|........ ...-|. .+. ....++.++.||.|+..
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~-----~~~~~~-~~~---~~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQ-----TETVWR-QAT---TYGVPRIVFVNKMDKLG 141 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHH-----HHHHHH-HHH---HTTCCEEEEEECTTSTT
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHH-----HHHHHH-HHH---HcCCCEEEEEECCCccc
Confidence 467899999999999888899999999999999865432100 001111 111 12567788899999854
No 412
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.04 E-value=0.0099 Score=54.88 Aligned_cols=58 Identities=24% Similarity=0.300 Sum_probs=39.8
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC--CCCCCCCcccceeEEEEECCE---------------EEEEEEeecCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGE---------------PYTLGLNFART 60 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f--~~~~~~tv~~~~~~~~~~~~~---------------~~~~~~~~~~~ 60 (330)
..++.+||.+|||||||++.++.... ..+++.|..+.....+.+.+. +..+.+||+++
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 46899999999999999999998664 333444444444455555542 13467777776
No 413
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.99 E-value=0.011 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.++++|++|+|||||+..+..-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999988653
No 414
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.94 E-value=0.00014 Score=69.09 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=21.7
Q ss_pred eeEeEEEeecCCCceeEEEEeeccC
Q psy9997 62 QTIKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 62 ~~~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.+++|+++|.+|+||||+.++|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988654
No 415
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.86 E-value=0.0053 Score=55.90 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEY 32 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~~~~ 32 (330)
..+|+++|++|||||||+++++...|.+..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~ 60 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRG 60 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 468999999999999999999998875433
No 416
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.70 E-value=0.0039 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.0
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKF 28 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f 28 (330)
..+|+++|.+|||||||+.+++...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999997654
No 417
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.46 E-value=0.0087 Score=53.23 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
..+|+++|++|+|||||+++++...+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~l 50 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFL 50 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcC
Confidence 468999999999999999999988763
No 418
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.28 E-value=0.0036 Score=58.54 Aligned_cols=171 Identities=9% Similarity=-0.036 Sum_probs=0.0
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
++++|++|+||||++ ..+...+-+....++++-.+.
T Consensus 100 I~lvG~~GsGKTTt~--------------------------------------------~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTA--------------------------------------------GKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEECCCTTSCHHHHH--------------------------------------------HHHHHHHHHTTCCEEEEEECC
T ss_pred EEEECCCCCCHHHHH--------------------------------------------HHHHHHHHHcCCeEEEEecCc
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc----------cccccCccccCCC
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED----------YDRLRPLSYPQTD 215 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~----------~~~~~~~~~~~~d 215 (330)
.+..-............-..........+................++-+.||+|... ...+.... ..+
T Consensus 136 ~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~--~pd 213 (433)
T 3kl4_A 136 YRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL--KPD 213 (433)
T ss_dssp SCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH--CCS
T ss_pred cchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh--CCc
Q ss_pred EEEEEEEcCChhhHhhhhhcchhhhhhcCCCCcEEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEE
Q psy9997 216 VFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE 295 (330)
Q Consensus 216 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 295 (330)
.+++|.|.+....-.++.+.+.+.+ .+..+|.||.|... ....+.......+ .|+..
T Consensus 214 ~vlLVlDa~~gq~a~~~a~~f~~~~------~~~gVIlTKlD~~a----------------~~G~als~~~~~g-~Pi~f 270 (433)
T 3kl4_A 214 DVILVIDASIGQKAYDLASRFHQAS------PIGSVIITKMDGTA----------------KGGGALSAVVATG-ATIKF 270 (433)
T ss_dssp EEEEEEEGGGGGGGHHHHHHHHHHC------SSEEEEEECGGGCS----------------CHHHHHHHHHHHT-CEEEE
T ss_pred ceEEEEeCccchHHHHHHHHHhccc------CCcEEEEecccccc----------------cchHHHHHHHHHC-CCEEE
Q ss_pred EeeccCCCHHHH
Q psy9997 296 CSALTQKGLKNV 307 (330)
Q Consensus 296 ~Sa~~~~~v~~~ 307 (330)
++. |++++++
T Consensus 271 ig~--Ge~v~dL 280 (433)
T 3kl4_A 271 IGT--GEKIDEL 280 (433)
T ss_dssp EEC--CSSSSCE
T ss_pred EEC--CCChHhC
No 419
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.15 E-value=0.015 Score=56.14 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=24.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCCCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNKFP 29 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~f~ 29 (330)
..+|+++|..|+|||||+++++...+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 468999999999999999999998873
No 420
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.76 E-value=0.016 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+|++.++|.+|+|||||++.++.-.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999988643
No 421
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.75 E-value=0.016 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-.++++|.+|+|||||+..+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998763
No 422
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.67 E-value=0.0019 Score=57.41 Aligned_cols=172 Identities=10% Similarity=-0.085 Sum_probs=0.0
Q ss_pred EEEeecCCCceeEEEEeeccCCCCCCCCCceeecceEEEEECCceeeeeeeecCCCccccccCCCCCCCCceEEEEeccc
Q psy9997 66 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~l~~~~~~~~~~~i~v~~~~ 145 (330)
++++|.+|+||||++ ..+...+-+...-++++-.+.
T Consensus 101 i~i~G~~G~GKTT~~--------------------------------------------~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTA--------------------------------------------GKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp EEEECSSCSSTTHHH--------------------------------------------HHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCHHHHH--------------------------------------------HHHHHHHHHCCCeEEEEecCC
Q ss_pred cchhhhcccccccCCcceeeeccCCCcccccccceeeccCCCccccccccccccccc--cccccC------ccccCCCEE
Q psy9997 146 MNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFITNINPGWVRDRSLFDTAGQED--YDRLRP------LSYPQTDVF 217 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~D~~g~e~--~~~~~~------~~~~~~d~~ 217 (330)
.+......+.......--.+........+......-.........++.+.||+|... ...... .....+|.+
T Consensus 137 ~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~v 216 (297)
T 1j8m_F 137 YRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEV 216 (297)
T ss_dssp SSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEE
T ss_pred CCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEE
Q ss_pred EEEEEcCChhhHhhhhhcchhhhhhcCCCCc-EEEEEeccCCCCCchhhHHhhhCCCCCcCHHHHHHHHHHhCCeeEEEE
Q psy9997 218 LVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVEC 296 (330)
Q Consensus 218 ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilV~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 296 (330)
++|.|.+.. . ..+..+.......| ..+|.||.|... ....+..++...+ .++..+
T Consensus 217 llVvda~~g------~-~~~~~~~~~~~~~~i~gvVlnk~D~~~----------------~~g~~~~~~~~~~-~pi~~i 272 (297)
T 1j8m_F 217 TLVIDASIG------Q-KAYDLASKFNQASKIGTIIITKMDGTA----------------KGGGALSAVAATG-ATIKFI 272 (297)
T ss_dssp EEEEEGGGG------G-GHHHHHHHHHHTCTTEEEEEECGGGCT----------------THHHHHHHHHTTT-CCEEEE
T ss_pred EEEeeCCch------H-HHHHHHHHHHhhCCCCEEEEeCCCCCc----------------chHHHHHHHHHHC-cCEEEE
Q ss_pred eeccCCCHHHH
Q psy9997 297 SALTQKGLKNV 307 (330)
Q Consensus 297 Sa~~~~~v~~~ 307 (330)
+ .|++++++
T Consensus 273 ~--~Ge~v~dl 281 (297)
T 1j8m_F 273 G--TGEKIDEL 281 (297)
T ss_dssp E--CSSSTTCE
T ss_pred e--CCCChhhc
No 423
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.66 E-value=0.0051 Score=56.15 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=71.0
Q ss_pred eEEEeecCCCceeEEEEeeccCCCCCCCCCcee---------------ecceE---------------------------
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---------------DNYAV--------------------------- 102 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~~~~~~~~t~~---------------~~~~~--------------------------- 102 (330)
+|+++|++|+|||||++++++..|......++. ..+..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 115 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRET 115 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhc
Confidence 899999999999999999999887433322210 00000
Q ss_pred -----------EEEE-CCceeeeeeeecCCCccc-------------cccCCCCCCCCceEEEEeccccchhhhcccccc
Q psy9997 103 -----------TVMI-GGEPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRK 157 (330)
Q Consensus 103 -----------~~~~-~~~~~~l~i~Dt~g~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~ 157 (330)
.+.+ ......+.+|||||...+ ..+...|++++|+++++++........
T Consensus 116 g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~------ 189 (360)
T 3t34_A 116 GRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT------ 189 (360)
T ss_dssp CTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG------
T ss_pred CCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC------
Confidence 1111 112346899999999876 566778999999999998754322111
Q ss_pred cCCcceeeeccCCCcccccccceeeccC
Q psy9997 158 LGGWFWFISTEHSPPMKLHTLGFITNIN 185 (330)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 185 (330)
..|............+...+.||.|+.
T Consensus 190 -~~~~~l~~~~~~~~~~~i~V~nK~Dl~ 216 (360)
T 3t34_A 190 -SDAIKISREVDPSGDRTFGVLTKIDLM 216 (360)
T ss_dssp -CHHHHHHHHSCTTCTTEEEEEECGGGC
T ss_pred -HHHHHHHHHhcccCCCEEEEEeCCccC
Confidence 122222222223345677778888874
No 424
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.64 E-value=0.02 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.+++++|.+|+|||+|+..++..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999887754
No 425
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.47 E-value=0.021 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
|+|+|.+|||||+|+.+++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999998754
No 426
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.36 E-value=0.022 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-.++++|.+|+|||||+..+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 427
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.28 E-value=0.026 Score=45.84 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=21.0
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++...+..
T Consensus 1 M~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6777899999999999999988865
No 428
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.14 E-value=0.0041 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.1
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999888764
No 429
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.13 E-value=0.033 Score=46.26 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.--++++|.+|+|||+|+.+++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999998853
No 430
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.10 E-value=0.033 Score=44.76 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
|...-|++.|.+|+|||++...+...
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 55567999999999999999998864
No 431
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.82 E-value=0.038 Score=44.95 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.1
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++..++..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 7778899999999999999988865
No 432
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.79 E-value=0.042 Score=45.42 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=22.4
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++...+..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5677899999999999999999875
No 433
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.78 E-value=0.063 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.6
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.++|+++|.++||||+|+++++...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 4689999999999999999998765
No 434
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.70 E-value=0.035 Score=45.34 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
++++|.+|+|||+++..++..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998753
No 435
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.69 E-value=0.035 Score=46.85 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||||+..+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998764
No 436
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.51 E-value=0.04 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+++..+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999998864
No 437
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.50 E-value=0.065 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
.|.|||.+|+|||||+.++....
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 57899999999999999998653
No 438
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.49 E-value=0.041 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|++|+|||+++..+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988764
No 439
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.40 E-value=0.04 Score=44.82 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+++..+...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998764
No 440
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.36 E-value=0.043 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-++++|.+|+|||+++.++...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998764
No 441
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.35 E-value=0.044 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
--++++|.+|+|||+++..+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999988764
No 442
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.32 E-value=0.0069 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998764
No 443
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.30 E-value=0.044 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.++++|.+|+|||+|+..++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 444
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.19 E-value=0.048 Score=43.39 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|++.|.+|+|||++...+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 445
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.17 E-value=0.048 Score=45.32 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEcCCCCChhHHHHHHHhC
Q psy9997 6 CVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~~~ 26 (330)
++++|.+|+|||+|++.++.-
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999988753
No 446
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.06 E-value=0.061 Score=44.27 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
...++++|.+|+|||+++..+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999987654
No 447
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.11 Score=47.49 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=38.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCCC-CCCCCCCcccceeEEEEECCEEEEEEEeecCCc
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTM 61 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~f-~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (330)
-.|.+||-++||||||+++++...- ..+|+.|-.+.....+.+.+.. +.+.|+++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl 129 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGI 129 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGG
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCc
Confidence 3699999999999999999986432 2334444444444556666654 466787773
No 448
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.96 E-value=0.046 Score=43.99 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChhHHHHHHH
Q psy9997 5 KCVVVGDGAVGKTCLLISYT 24 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~ 24 (330)
-++++|.+|+|||+|+..+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999743
No 449
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.94 E-value=0.0085 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.++++|++|+|||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999988763
No 450
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.89 E-value=0.07 Score=43.14 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+...|++.|.+|+|||++...+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998874
No 451
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.88 E-value=0.059 Score=42.97 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhCC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
-+.++|+.|+|||+|++-++...
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999988755
No 452
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.75 E-value=0.066 Score=48.55 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
...|.++|.+|+|||||+++++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 453
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.74 E-value=0.073 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
...|+++|.+|+|||++...+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988764
No 454
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.74 E-value=0.073 Score=44.21 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.7
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
...|.++|.+|+|||+|+..+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999987764
No 455
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.73 E-value=0.065 Score=44.62 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++|++.|.+|+|||++..++..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 456
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.73 E-value=0.065 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
++|++.|.+|+|||++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 457
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.73 E-value=0.069 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.+|.++|.+|+|||++...+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998875
No 458
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.70 E-value=0.067 Score=44.07 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|+++|.+|+|||++...+...
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 459
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.66 E-value=0.065 Score=42.77 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
..|+++|.+|+|||++...+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999888763
No 460
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.59 E-value=0.065 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhCC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTNK 27 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~~ 27 (330)
+++.|+|.+|+|||||++.++...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 569999999999999999988653
No 461
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.57 E-value=0.084 Score=42.24 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.-|++.|.+|+|||++..++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999886
No 462
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.57 E-value=0.081 Score=42.37 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
..++++|.+|+|||++...+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999988765
No 463
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.46 E-value=0.052 Score=43.52 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|++|+|||+++..+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 464
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.44 E-value=0.078 Score=42.73 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-.|++.|.+|+|||++...+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345899999999999999988753
No 465
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.38 E-value=0.011 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
|+++|++|+|||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998764
No 466
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.38 E-value=0.08 Score=43.60 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.+|+++|.+|+|||++...+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999886
No 467
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.33 E-value=0.011 Score=48.34 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
++++|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678999999999999988764
No 468
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.29 E-value=0.012 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEeecCCCceeEEEEeeccCC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTNK 87 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~~ 87 (330)
-++++|++|+|||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46799999999999999987753
No 469
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.26 E-value=0.06 Score=43.45 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+|+..++..
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999888753
No 470
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.25 E-value=0.073 Score=42.22 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChhHHHHHH
Q psy9997 5 KCVVVGDGAVGKTCLLISY 23 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~ 23 (330)
-|++.|.+|+|||++...+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999988
No 471
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.22 E-value=0.076 Score=43.72 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.|++.|.+|+|||++...+...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 472
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.17 E-value=0.086 Score=43.14 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.|++.|.+|+|||++...+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 473
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.16 E-value=0.08 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
--++++|.+|+|||+++..+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998865
No 474
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.15 E-value=0.012 Score=48.84 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.1
Q ss_pred EeEEEeecCCCceeEEEEeeccC
Q psy9997 64 IKCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 64 ~ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
--++++|++|+|||||++++.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999998864
No 475
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.12 E-value=0.014 Score=47.57 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.++++|++|+||||+++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999988764
No 476
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.08 E-value=0.013 Score=48.42 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.4
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999988764
No 477
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.06 E-value=0.087 Score=47.82 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
..+|+++|.+|||||||+.++...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 478
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.06 E-value=0.083 Score=42.93 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
-++++|.+|+|||+++..+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
No 479
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.01 E-value=0.098 Score=44.70 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+.++|++.|.+|+|||++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999875
No 480
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.01 E-value=0.088 Score=42.68 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-++++|.+|+|||+|+.+++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999998754
No 481
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.97 E-value=0.093 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCChhHHHHHHHh
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
..++++|.+|+|||+++..+..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
No 482
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.97 E-value=0.078 Score=42.70 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=16.6
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|+...|++.|.+|+|||++...+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999875
No 483
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.95 E-value=0.096 Score=42.29 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-.|+++|.+|+|||++...+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998753
No 484
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.93 E-value=0.014 Score=48.69 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEeecCCCceeEEEEeeccC
Q psy9997 66 CVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~~~ 86 (330)
++++|++|+|||||++.+.+-
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999988764
No 485
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.92 E-value=0.088 Score=43.28 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
++.++|.+|+|||+++..++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999887653
No 486
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.87 E-value=0.11 Score=42.48 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.8
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHhC
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+...|++.|.+|+|||++...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998864
No 487
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.86 E-value=0.094 Score=42.06 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
+|+++|.+|+|||++...+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 488
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.85 E-value=0.019 Score=46.34 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.7
Q ss_pred EEEeecCCCceeEEEEeec
Q psy9997 66 CVVVGDGAVGKTCLLISYT 84 (330)
Q Consensus 66 i~vvG~~~~GKTsl~~~l~ 84 (330)
++++|++|+|||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6799999999999998754
No 489
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.84 E-value=0.11 Score=42.21 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
..-|++.|.+|+|||++...+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
No 490
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.79 E-value=0.1 Score=43.16 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCChhHHHHHHHh
Q psy9997 3 TIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 3 ~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
...+.++|.+|+|||+|+..+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988765
No 491
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.73 E-value=0.12 Score=42.54 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 2 QTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 2 ~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
+.+.|++.|.+|+|||++...+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998875
No 492
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.65 E-value=0.094 Score=44.44 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHH
Q psy9997 6 CVVVGDGAVGKTCLLISYT 24 (330)
Q Consensus 6 v~~lGd~~vGKtsl~~~~~ 24 (330)
++++|.+|+|||+|+..++
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999887
No 493
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.64 E-value=0.18 Score=44.06 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=25.9
Q ss_pred eEEEEcCCCCChhHHHHHHHhCCCCCCCCCCcccceeEEEEECCEEE
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY 51 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~~f~~~~~~tv~~~~~~~~~~~~~~~ 51 (330)
.+.++|.+|+|||||+..++.-. .|+ .-.+.+++.++
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~-----~p~-----~G~I~~~G~~i 72 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL-----KPS-----SGRILFDNKPI 72 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-----CCS-----EEEEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-----CCC-----CeEEEECCEEC
Confidence 47899999999999998876522 222 34566666654
No 494
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.64 E-value=0.016 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999988774
No 495
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.60 E-value=0.12 Score=41.89 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.|++.|.+|+|||++...+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 496
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.60 E-value=0.11 Score=42.06 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=19.9
Q ss_pred CceeeEEEEcCCCCChhHHHHHHHh
Q psy9997 1 MQTIKCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 1 ~~~~kv~~lGd~~vGKtsl~~~~~~ 25 (330)
|.. .|++.|.+|+|||++...+..
T Consensus 1 M~~-~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 1 MAP-KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp -CC-SEEEECSTTSSHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHH
Confidence 443 499999999999999988875
No 497
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.54 E-value=0.017 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.5
Q ss_pred eEEEeecCCCceeEEEEeeccC
Q psy9997 65 KCVVVGDGAVGKTCLLISYTTN 86 (330)
Q Consensus 65 ki~vvG~~~~GKTsl~~~l~~~ 86 (330)
-++++|++|+||||+++.+.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999998765
No 498
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.52 E-value=0.1 Score=42.95 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCChhHHHHHHHhC
Q psy9997 4 IKCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 4 ~kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
.-|+++|.+|+|||++...+...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999887653
No 499
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.51 E-value=0.1 Score=43.77 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhHHHHHHHhC
Q psy9997 5 KCVVVGDGAVGKTCLLISYTTN 26 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~~ 26 (330)
-+++.|++|+|||+++..+...
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 500
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.50 E-value=0.053 Score=43.85 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhHHHHHHHh
Q psy9997 5 KCVVVGDGAVGKTCLLISYTT 25 (330)
Q Consensus 5 kv~~lGd~~vGKtsl~~~~~~ 25 (330)
.+.++|.+|+|||+|+..++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999988764
Done!