RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9997
(330 letters)
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 249 bits (637), Expect = 2e-81
Identities = 85/127 (66%), Positives = 104/127 (81%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAG EDYDRLRPLSYPQTDVFL+CFS+VSP+SF +V+ KW PE+ HHC TP +LV
Sbjct: 206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILV 265
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 266 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
Query: 313 LAALEPP 319
A L PP
Sbjct: 326 RAVLCPP 332
Score = 119 bits (300), Expect = 2e-31
Identities = 65/84 (77%), Positives = 72/84 (85%)
Query: 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 118
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCF 142
AG EDYDRLRPLSYPQTDVFL+CF
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICF 234
Score = 58.5 bits (141), Expect = 8e-10
Identities = 41/55 (74%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 242 bits (620), Expect = 2e-80
Identities = 57/128 (44%), Positives = 85/128 (66%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
++DTAGQ+DYDRLRPL YP V L+CF V SP+SF+N+ +W PE+ H C+K P ++V
Sbjct: 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV 144
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR+D + KL +N +P+++ +G+++A+ + AV Y+ECSA + VF EA
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
Query: 313 LAALEPPE 320
AL
Sbjct: 205 EVALSSRG 212
Score = 174 bits (443), Expect = 9e-54
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
++++K V+VGDG GKT LL+ + FP Y PTVF+ Y V + + G+P L ++DTA
Sbjct: 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTA 90
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQ+DYDRLRPL YP V L+CF
Sbjct: 91 GQDDYDRLRPLFYPDASVLLLCF 113
Score = 108 bits (271), Expect = 3e-28
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
++++K V+VGDG GKT LL+ + FP Y PTVF+ Y V + + G+P L +
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHI 86
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 240 bits (614), Expect = 1e-79
Identities = 67/131 (51%), Positives = 90/131 (68%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H C P +LV
Sbjct: 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILV 135
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ DLR D +LA+ KQ+P+ + G +A ++A Y+ECSA T++G++ VF+ A
Sbjct: 136 ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETAT 195
Query: 313 LAALEPPEPPK 323
AAL+ +
Sbjct: 196 RAALQKRYGSQ 206
Score = 173 bits (439), Expect = 3e-53
Identities = 52/83 (62%), Positives = 63/83 (75%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+M K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTA
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDYDRLRPLSYP TDV L+CF
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCF 104
Score = 107 bits (270), Expect = 3e-28
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
M K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELAL 77
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 238 bits (608), Expect = 8e-79
Identities = 68/125 (54%), Positives = 90/125 (72%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+L+DTAGQEDYDRLRPLSYP TDV L+CFS+ SP S EN+ EKW PE+ H C P +LV
Sbjct: 76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 135
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G + DLR+D T +LAK KQ+P+ E+G +A + A Y+ECSA T++G++ VF+ A
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMAT 195
Query: 313 LAALE 317
A L+
Sbjct: 196 RAGLQ 200
Score = 165 bits (420), Expect = 1e-50
Identities = 52/87 (59%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 58 ARTMQTI--KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 115
M I K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 18 GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELAL 77
Query: 116 FDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+DTAGQEDYDRLRPLSYP TDV L+CF
Sbjct: 78 WDTAGQEDYDRLRPLSYPDTDVILMCF 104
Score = 100 bits (252), Expect = 8e-26
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K V+VGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELAL 77
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 237 bits (606), Expect = 2e-78
Identities = 78/131 (59%), Positives = 98/131 (74%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L DTAGQ+++D+LRPL Y TD+FL+CFSVVSPSSF+NV EKWVPEI HC K P +LV
Sbjct: 71 QLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILV 130
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GTQ DLRED L +L K K+KP+ E + LA+E+KA Y+ECSALTQK LK VFD AI
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190
Query: 313 LAALEPPEPPK 323
+A ++ + +
Sbjct: 191 VAGIQYSDTQQ 201
Score = 174 bits (444), Expect = 4e-54
Identities = 52/95 (54%), Positives = 69/95 (72%)
Query: 48 GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG 107
GEP G + +KCV+VGDGAVGKT L++SYTTN +P+EY+PT FDN++ V +
Sbjct: 5 GEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVD 64
Query: 108 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
G P L L DTAGQ+++D+LRPL Y TD+FL+CF
Sbjct: 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCF 99
Score = 109 bits (274), Expect = 7e-29
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ +KCV+VGDGAVGKT L++SYTTN +P+EY+PT FDN++ V + G P L L
Sbjct: 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQL 72
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 236 bits (605), Expect = 4e-78
Identities = 62/146 (42%), Positives = 89/146 (60%), Gaps = 13/146 (8%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDY RLRPLSY D+F++ FS++S +S+ENV +KW+PE+ P +LV
Sbjct: 60 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D L I+ QGE+L K++ A Y+ECS+ TQ+ +K VFD AI
Sbjct: 120 GTKLDLRDDKGYLAD----HTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175
Query: 313 LAALEPPEP---------PKKRKCVL 329
L+PP ++ C +
Sbjct: 176 KVVLQPPRRKEVPRRRKNHRRSGCSI 201
Score = 184 bits (468), Expect = 2e-57
Identities = 52/83 (62%), Positives = 66/83 (79%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G+ LGL+DTA
Sbjct: 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDY RLRPLSY D+F++ F
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAF 88
Score = 117 bits (295), Expect = 9e-32
Identities = 34/55 (61%), Positives = 44/55 (80%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++ V + G+ LGL
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGL 61
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 236 bits (603), Expect = 6e-78
Identities = 86/124 (69%), Positives = 104/124 (83%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYPQTDVFL+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 141 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
Query: 313 LAAL 316
A L
Sbjct: 201 RAVL 204
Score = 173 bits (439), Expect = 3e-53
Identities = 68/87 (78%), Positives = 74/87 (85%)
Query: 56 NFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 115
N Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
Query: 116 FDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+DTAGQEDYDRLRPLSYPQTDVFL+CF
Sbjct: 83 WDTAGQEDYDRLRPLSYPQTDVFLICF 109
Score = 107 bits (268), Expect = 5e-28
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 82
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 233 bits (596), Expect = 6e-77
Identities = 54/125 (43%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 138
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198
Query: 312 ILAAL 316
LA +
Sbjct: 199 TLACV 203
Score = 167 bits (424), Expect = 5e-51
Identities = 39/79 (49%), Positives = 49/79 (62%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+G
Sbjct: 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YD +RPLSYP +D L+CF
Sbjct: 89 YDNVRPLSYPDSDAVLICF 107
Score = 101 bits (254), Expect = 5e-26
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 29 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 232 bits (594), Expect = 8e-77
Identities = 90/132 (68%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYPQTDV L+CFS+VSP+SFENV+ KW PE+ HHC TP +LV
Sbjct: 56 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D T+EKL + K PI++ QG +AKE+ AVKY+ECSALTQ+GLK VFDEAI
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
Query: 313 LAALEPPEPPKK 324
A L PP P KK
Sbjct: 176 RAVLCPP-PVKK 186
Score = 158 bits (400), Expect = 1e-47
Identities = 66/83 (79%), Positives = 73/83 (87%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDYDRLRPLSYPQTDV L+CF
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICF 84
Score = 99.1 bits (247), Expect = 3e-25
Identities = 42/55 (76%), Positives = 46/55 (83%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
Q IKCVVVGDGAVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 57
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 231 bits (591), Expect = 2e-76
Identities = 61/126 (48%), Positives = 87/126 (69%), Gaps = 2/126 (1%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDY+RLRPLSY DVF++ FS++S +S+ENV +KW+PE+ H+ P +LV
Sbjct: 59 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV 118
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GT++DLR+D + PI+ QGE+L K + A Y+ECS+ +Q+ +K VFD AI
Sbjct: 119 GTKLDLRDDKQFF--IDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176
Query: 313 LAALEP 318
L+P
Sbjct: 177 RVVLQP 182
Score = 172 bits (438), Expect = 2e-53
Identities = 55/83 (66%), Positives = 67/83 (80%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL+DTA
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDY+RLRPLSY DVF++ F
Sbjct: 65 GQEDYNRLRPLSYRGADVFILAF 87
Score = 106 bits (267), Expect = 5e-28
Identities = 36/55 (65%), Positives = 44/55 (80%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ IKCV VGDGAVGKTCLLISYT+N FP++YVPTVFDN++ V++ G LGL
Sbjct: 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGL 60
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 231 bits (591), Expect = 5e-76
Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPL Y +D L+CF + P + ++ +KW EI +C T LL+
Sbjct: 78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLI 137
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALT-QKGLKNVFDEA 311
G + DLR D TL +L+ KQ PIS+EQG +AK+L A Y+E SA T +K + ++F A
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197
Query: 312 ILAALEPPEPPKKRKCV 328
+ L P P ++ V
Sbjct: 198 SMLCLNKPSPLPQKSPV 214
Score = 160 bits (407), Expect = 2e-48
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+ K V+VGD GKT +L + +P YVPTVF+NY + + L L+DT+
Sbjct: 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
G YD +RPL Y +D L+CF
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCF 106
Score = 101 bits (253), Expect = 1e-25
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ K V+VGD GKT +L + +P YVPTVF+NY + + L L
Sbjct: 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSL 79
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 229 bits (587), Expect = 1e-75
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 10/131 (7%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQE+YDRLRPLSY +DV L+CF+V + +SF+N+ KW PEI H+ +LV
Sbjct: 74 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 133
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
G ++DLR+D ++ ++G+ L ++L V Y+E S++ + GL VF++++
Sbjct: 134 GLKVDLRKD----------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183
Query: 313 LAALEPPEPPK 323
PK
Sbjct: 184 DCIFSNKPVPK 194
Score = 179 bits (457), Expect = 4e-56
Identities = 46/82 (56%), Positives = 63/82 (76%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L+DTAG
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE+YDRLRPLSY +DV L+CF
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCF 102
Score = 114 bits (288), Expect = 6e-31
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+ +K VVVGDGAVGKTCLL++++ + P+ YVPTVF+N++ + E + L L
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 75
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 226 bits (579), Expect = 1e-74
Identities = 54/125 (43%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
SL+DT+G YD +RPLSYP +D L+CF + P + ++V +KW EI C T LLV
Sbjct: 58 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 117
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSAL-TQKGLKNVFDEA 311
G + DLR D TL +L+ ++Q P+S++QG +AK++ A Y+ECSAL ++ ++++F A
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177
Query: 312 ILAAL 316
LA +
Sbjct: 178 TLACV 182
Score = 159 bits (405), Expect = 2e-48
Identities = 39/79 (49%), Positives = 49/79 (62%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L+DT+G
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 124 YDRLRPLSYPQTDVFLVCF 142
YD +RPLSYP +D L+CF
Sbjct: 68 YDNVRPLSYPDSDAVLICF 86
Score = 100 bits (250), Expect = 1e-25
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
K VVVGD GKT LL + + FP YVPTVF+NY + I + L L
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 223 bits (571), Expect = 3e-73
Identities = 89/126 (70%), Positives = 104/126 (82%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
L+DTAGQEDYDRLRPLSYP TDVFL+CFSVV+P+SF+NVKE+WVPE+ + PFLL+
Sbjct: 69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 128
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
GTQIDLR+D TL +L K+KPI EQG+KLAKE+ A YVECSALTQKGLK VFDEAI
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188
Query: 313 LAALEP 318
+A L P
Sbjct: 189 IAILTP 194
Score = 164 bits (418), Expect = 3e-50
Identities = 62/81 (76%), Positives = 71/81 (87%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL+DTAGQ
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
EDYDRLRPLSYP TDVFL+CF
Sbjct: 77 EDYDRLRPLSYPMTDVFLICF 97
Score = 104 bits (262), Expect = 3e-27
Identities = 38/54 (70%), Positives = 45/54 (83%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 55
+KCVVVGDGAVGKTCLL+SY + FP EYVPTVFD+YAV+V +GG+ Y LGL
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 70
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 94.6 bits (236), Expect = 2e-23
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQ++Y L +++ +SV S SF+ ++ ++ H + P +LVG
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVG 136
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAIL 313
+ DL ++ + +G+KLA+ ++E SA + + +F ++
Sbjct: 137 NKADLSP------------EREVQAVEGKKLAESWG-ATFMESSARENQLTQGIF-TKVI 182
Query: 314 AALE--PPEPPKKRKCVLL 330
+ ++R+C L+
Sbjct: 183 QEIARVENSYGQERRCHLM 201
Score = 87.6 bits (218), Expect = 7e-21
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
++ K V++G VGKT L + +F Y PTV + Y+ V +G + + L L DTAG
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG 81
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
Q++Y L +++ +
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVY 103
Score = 63.0 bits (154), Expect = 5e-12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
++ K V++G VGKT L + +F Y PTV + Y+ V +G + + L
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHL 74
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 91.0 bits (227), Expect = 2e-22
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + T F +Y PT+ D Y + + P L + DTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
E + +R L F++ +
Sbjct: 61 TEQFASMRDLYIKNGQGFILVY 82
Score = 86.4 bits (215), Expect = 9e-21
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAG E + +R L F++ +S+V+ SF+++K +I +K P +LVG
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++DL ++ +S +G LA+E ++E SA ++ + +F E
Sbjct: 116 NKVDLES------------EREVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAE 159
Score = 64.8 bits (159), Expect = 7e-13
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M+ K VV+G G VGK+ L + + T F +Y PT+ D Y + + P L
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVL 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 89.5 bits (223), Expect = 8e-22
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L + DTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
E + +R L F + +
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVY 82
Score = 84.9 bits (211), Expect = 4e-20
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAG E + +R L F + +S+ + S+F ++++ +I + P +LVG
Sbjct: 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + ++ + EQG+ LA++ ++E SA ++ + +F +
Sbjct: 116 NKCDLED------------ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160
Score = 64.4 bits (158), Expect = 8e-13
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + + L
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCML 53
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 89.1 bits (222), Expect = 1e-21
Identities = 35/82 (42%), Positives = 43/82 (52%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG G VGK+ L I N F E PT+ D+Y V+I GE L + DTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE+Y +R + FL F
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVF 82
Score = 82.5 bits (205), Expect = 2e-19
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
DTAGQE+Y +R + FL F++ + SFE++ + + +I P +LVG
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVG 115
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + Q + LA+ + Y+E SA T++G+++ F
Sbjct: 116 NKSDL-------------AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYT 158
Score = 64.0 bits (157), Expect = 1e-12
Identities = 24/53 (45%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M K VVVG G VGK+ L I N F E PT+ D+Y V+I GE L
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLL 53
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 89.6 bits (223), Expect = 1e-21
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQE+Y +R + FL F++ + SFE++ + +I + P +LVG
Sbjct: 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF----- 308
+ DL + + +Q + LA+ + ++E SA T++G+ + F
Sbjct: 117 NKCDL-------------PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVR 162
Query: 309 -----DEAILAALEPPEPPKKRKCVLL 330
E + + + K KCV++
Sbjct: 163 EIRKHKEKMSKDGKKKKKKSKTKCVIM 189
Score = 85.3 bits (212), Expect = 4e-20
Identities = 34/78 (43%), Positives = 42/78 (53%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R + FL F
Sbjct: 66 SAMRDQYMRTGEGFLCVF 83
Score = 61.1 bits (149), Expect = 2e-11
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VVVG VGK+ L I N F EY PT+ D+Y V+I GE L
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 54
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 89.6 bits (223), Expect = 1e-21
Identities = 36/82 (43%), Positives = 44/82 (53%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
M K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L + DTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE+Y +R + FL F
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVF 100
Score = 83.0 bits (206), Expect = 4e-19
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
DTAGQE+Y +R + FL F++ + SF ++ + +I P +LVG
Sbjct: 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVG 133
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + +Q +LAK + ++E SA T++G+++ F
Sbjct: 134 NKCDL-------------PTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYT 176
Score = 64.9 bits (159), Expect = 1e-12
Identities = 25/53 (47%), Positives = 29/53 (54%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M K VVVG G VGK+ L I N F EY PT+ D+Y V+I GE L
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLL 71
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 89.1 bits (222), Expect = 1e-21
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 58 ARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 117
+ + T K VVVGDG VGK+ L I + F +Y PT+ D+Y I + L + D
Sbjct: 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLD 72
Query: 118 TAGQEDYDRLRPLSYPQTDVFLVCF 142
TAGQE++ +R D FL+ +
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVY 97
Score = 82.2 bits (204), Expect = 5e-19
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
DTAGQE++ +R D FL+ +SV +SFE+V + I + P +LV
Sbjct: 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVA 130
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
++DL + ++ +QG+++A + + Y+E SA NV D+
Sbjct: 131 NKVDLMH------------LRKVTRDQGKEMATKYN-IPYIETSAKDPPL--NV-DKT 172
Score = 64.9 bits (159), Expect = 9e-13
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ T K VVVGDG VGK+ L I + F +Y PT+ D+Y I + L
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAIL 68
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 87.5 bits (218), Expect = 4e-21
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
++ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTA
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQEDY +R + + FL F
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVF 83
Score = 82.9 bits (206), Expect = 2e-19
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQEDY +R + + FL FS+ SF + + +I + PFLLVG
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVG 116
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + ++ +S E+ + A + V YVE SA T+ + VF +
Sbjct: 117 NKSDLED------------KRQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFD 160
Score = 62.5 bits (153), Expect = 4e-12
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE +
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 54
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 87.6 bits (218), Expect = 5e-21
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 62 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 121
++ K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L L DTAGQ
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
++Y + +++ +
Sbjct: 65 DEYSIFPQTYSIDINGYILVY 85
Score = 85.7 bits (213), Expect = 3e-20
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQ++Y + +++ +SV S SFE +K ++ + P +LVG
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVG 118
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ IS+E+G+ LA+ ++E SA + +VF
Sbjct: 119 NKKDLHM------------ERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRR 162
Score = 61.8 bits (151), Expect = 1e-11
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
++ K ++G +VGK+ L I + +F Y PT+ + + + + G+ Y L
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHL 56
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 86.8 bits (216), Expect = 7e-21
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
+ V G G VGK+ L++ + F Y+PTV D Y + TL + DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 64
Query: 125 DRLRPLSYPQTDVFLVCF 142
++ LS + F++ +
Sbjct: 65 PAMQRLSISKGHAFILVY 82
Score = 86.0 bits (214), Expect = 2e-20
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH---CQKTPFLLV 252
DT G + ++ LS + F++ +S+ S S E +K +I + P +LV
Sbjct: 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + D + + + E LA+ K ++E SA +K +F E
Sbjct: 116 GNKCDESP------------SREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQE 160
Score = 59.8 bits (146), Expect = 4e-11
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ V G G VGK+ L++ + F Y+PTV D Y + TL
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTL 53
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 86.8 bits (216), Expect = 9e-21
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 18/119 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFLLVG 253
D G + D + FS+ SF+ V + + + P +LVG
Sbjct: 73 DEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVG 126
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
TQ + + I + KL+ +LK Y E A ++ VF +
Sbjct: 127 TQDAISA----------ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175
Score = 79.1 bits (196), Expect = 6e-18
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 56 NFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 115
N +K +VG+ + GK+ L+ Y T + E P + +++ G+ Y L +
Sbjct: 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLI 71
Query: 116 FDTAGQEDY 124
D G +
Sbjct: 72 RDEGGPPEL 80
Score = 58.7 bits (143), Expect = 1e-10
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+K +VG+ + GK+ L+ Y T + E P + +++ G+ Y L
Sbjct: 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLL 69
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 86.8 bits (216), Expect = 1e-20
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAG
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QEDY +R + + FL F
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVF 97
Score = 83.8 bits (208), Expect = 2e-19
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQEDY +R + + FL FS+ SF + + +I + PFLLVG
Sbjct: 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVG 130
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + ++ +S E+ + A++ V YVE SA T+ + VF +
Sbjct: 131 NKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFD 174
Score = 62.2 bits (152), Expect = 7e-12
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE +
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 68
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 86.9 bits (216), Expect = 1e-20
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 31/152 (20%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKE--KWVPEITHHCQKTPFLLVG 253
DT G + ++ LS + F++ FSV S S E + K + +I + P +LVG
Sbjct: 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ D Q+ + + + +A+E K ++E SA +K +F E
Sbjct: 122 NKCDE-------------TQREVDTREAQAVAQEWK-CAFMETSAKMNYNVKELFQELLT 167
Query: 311 ------------AILAALEPPEPPKKRKCVLL 330
+ + K KC L+
Sbjct: 168 LETRRNMSLNIDGKRSGKQKRTDRVKGKCTLM 199
Score = 86.9 bits (216), Expect = 1e-20
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQF 69
Query: 125 DRLRPLSYPQTDVFLVCF 142
++ LS + F++ F
Sbjct: 70 PAMQRLSISKGHAFILVF 87
Score = 61.1 bits (149), Expect = 2e-11
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTL 58
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 87.3 bits (217), Expect = 1e-20
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE + + DTAG
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QEDY +R + + FL F
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVF 93
Score = 86.1 bits (214), Expect = 3e-20
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQEDY +R + + FL FS+ SF + + +I + PFLLVG
Sbjct: 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVG 126
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ DL + ++ +S E+ + A++ V YVE SA T+ + VF +
Sbjct: 127 NKSDLED------------KRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMR 173
Query: 311 AILAALEPPEPP-------------KKRKCVLL 330
I A + +C +L
Sbjct: 174 EIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206
Score = 63.4 bits (155), Expect = 4e-12
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ K ++VG G VGK+ L + + ++F +Y PT D+Y V++ GE +
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI 64
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 86.0 bits (214), Expect = 2e-20
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K VVVG G VGK+ L I + + F S+Y PT+ D+Y + G P L + DTAGQE++
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70
Query: 125 DRLRPLSYPQTDVFLVCF 142
+R FL+ F
Sbjct: 71 GAMREQYMRAGHGFLLVF 88
Score = 86.0 bits (214), Expect = 2e-20
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQE++ +R FL+ F++ SF V + +I P +LVG
Sbjct: 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ DL Q+ + + V Y E SA + + F++
Sbjct: 122 NKADLES------------QRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVR 168
Query: 311 AILAALEPPEPP 322
A+ E PP
Sbjct: 169 AVRKYQEQELPP 180
Score = 61.0 bits (149), Expect = 2e-11
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K VVVG G VGK+ L I + + F S+Y PT+ D+Y + G P L
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARL 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 86.4 bits (214), Expect = 3e-20
Identities = 44/249 (17%), Positives = 84/249 (33%), Gaps = 63/249 (25%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAGQ 121
K V++G+ +VGK+ +++ T + F T+ F Y V + +
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTY--VVNLNDINIKNNSNNEKNN 66
Query: 122 EDYDRLRPLSYPQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPMKLHTLGFI 181
+ T+ N+ NI+ +
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDI----------------------------- 97
Query: 182 TNINPGWVRDRSLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 241
W DTAGQE Y + PL Y +V F + + ++ + K WV ++
Sbjct: 98 ------W-------DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAK-TWVNQLK 143
Query: 242 HHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQ 301
+LV +ID + + + +K A++ + +++ SA T
Sbjct: 144 ISS-NYIIILVANKIDKN-------------KFQVDILEVQKYAQDNN-LLFIQTSAKTG 188
Query: 302 KGLKNVFDE 310
+KN+F
Sbjct: 189 TNIKNIFYM 197
Score = 60.6 bits (147), Expect = 4e-11
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 22/120 (18%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFARTMQTI 64
K V++G+ +VGK+ +++ T + F T+ G +F
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTI-----------------GASFC-----T 46
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
V + D + ++ + N ++DTAGQE Y
Sbjct: 47 YVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERY 106
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 83.7 bits (208), Expect = 1e-19
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
D Q+ L D +++ +SV SFE E ++ P +LVG
Sbjct: 55 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVG 113
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + +S ++G A K++E SA ++ +F+
Sbjct: 114 NKSDLVR------------SREVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEG 157
Score = 78.7 bits (195), Expect = 6e-18
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 124
K +++G VGK+ L + Y ++++ GE +L ++D Q+
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 125 DRLRPLSYPQTDVFLVCF 142
L D +++ +
Sbjct: 63 RWLPGHCMAMGDAYVIVY 80
Score = 54.4 bits (132), Expect = 3e-09
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
K +++G VGK+ L + Y ++++ GE +L
Sbjct: 4 KVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASL 51
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 83.8 bits (208), Expect = 1e-19
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 123
+ ++G GK+ L + + T +F SEY P + D Y+ + +P L + DTA +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 124 YDRLRPLSYPQTDVFLVCF 142
R FLV +
Sbjct: 82 P-RNCERYLNWAHAFLVVY 99
Score = 76.5 bits (189), Expect = 7e-17
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT----PFLL 251
DTA + R FLV +SV S SF++ ++ + H ++T P LL
Sbjct: 75 DTADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
+G ++D+ + + ++ +G LA + E SA ++V
Sbjct: 133 LGNKLDMAQ------------YRQVTKAEGVALAGRFG-CLFFEVSACLD--FEHV-QHV 176
Score = 63.0 bits (154), Expect = 4e-12
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ ++G GK+ L + + T +F SEY P + D Y+ + +P L
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHL 71
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 83.9 bits (208), Expect = 2e-19
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
+ G+ ++ L D +L+ +S+ +SFE E ++ + P +LVG
Sbjct: 96 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVG 152
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + +S +G A K++E SA Q +K +F+
Sbjct: 153 NKSDLVR------------CREVSVSEGRACAVVFD-CKFIETSAAVQHNVKELFEG 196
Score = 75.1 bits (185), Expect = 3e-16
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFD- 117
+ V++G+ VGK+ L + S+ D Y T+M+ GE T+ L D
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 118 --TAGQEDYDRLRPLSYPQTDVFLVCF 142
G+ ++ L D +L+ +
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVY 119
Score = 55.8 bits (135), Expect = 2e-09
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ V++G+ VGK+ L + S+ D Y T+M+ GE T+
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI 89
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 82.7 bits (205), Expect = 5e-19
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+K + G VGK+ L++ + T +F EY PT+ Y I E ++ + DTAG
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QED R + F++ +
Sbjct: 86 QEDT-IQREGHMRWGEGFVLVY 106
Score = 79.2 bits (196), Expect = 8e-18
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
DTAGQED R + F++ + + SFE V + + +LVG
Sbjct: 82 DTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVG 139
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEA 311
+ DL + +S E+GEKLA EL + ECSA T +G N+ E
Sbjct: 140 NKADLDH------------SRQVSTEEGEKLATELA-CAFYECSACTGEG--NI-TEI 181
Score = 61.5 bits (150), Expect = 2e-11
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+K + G VGK+ L++ + T +F EY PT+ Y I E ++
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSM 78
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 81.1 bits (201), Expect = 1e-18
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
+M + V++GD VGKT L + + + D Y T+ + GE TL + DT
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 120 GQEDYDR--LRPLSYPQTDVFLVCF 142
E D+ + +++ +
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVY 85
Score = 79.5 bits (197), Expect = 4e-18
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 196 DTAGQEDYDR--LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLL 251
DT E D+ + +++ +S+ SFE+ E ++ TH P +L
Sbjct: 58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE-LRIQLRRTHQADHVPIIL 116
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DL + +S E+G A K++E SA Q + +F+
Sbjct: 117 VGNKADLAR------------CREVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEG 162
Score = 61.8 bits (151), Expect = 9e-12
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
M + V++GD VGKT L + + + D Y T+ + GE TL
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTL 54
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 81.5 bits (202), Expect = 1e-18
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 196 DTAGQEDYD-RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLV 252
D Q D LR D FL+ FSV SF V E + + P +LV
Sbjct: 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILV 136
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + +S E+G LA L K++E SA + +F+
Sbjct: 137 GNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEG 181
Score = 79.2 bits (196), Expect = 7e-18
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQED 123
K ++VG+ VGK+ L ++ + S + P D Y +M+ E TL ++D Q D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 124 YD-RLRPLSYPQTDVFLVCF 142
LR D FL+ F
Sbjct: 85 AGGWLRDHCLQTGDAFLIVF 104
Score = 58.4 bits (142), Expect = 2e-10
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTL 53
K ++VG+ VGK+ L ++ + S + P D Y +M+ E TL
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTL 74
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 81.1 bits (201), Expect = 1e-18
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 59 RTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 118
R++ ++ V+GD GK+ L+ + T + T + Y +++ G+ + + + +
Sbjct: 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREE 61
Query: 119 AGQEDYDRLRPLSYPQTDVFLVCF 142
AG D D + F
Sbjct: 62 AGAPDA-----KFSGWADAVIFVF 80
Score = 66.9 bits (164), Expect = 1e-13
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 24/122 (19%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT----PFLL 251
+ AG D D + FS+ +SF+ V +++ + L
Sbjct: 60 EEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALAL 113
Query: 252 VGTQ--IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
VGTQ I + + + L ++K Y E A + VF
Sbjct: 114 VGTQDRISASS------------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQ 161
Query: 310 EA 311
E
Sbjct: 162 EV 163
Score = 61.1 bits (149), Expect = 2e-11
Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 53
+ ++ V+GD GK+ L+ + T + T + Y +++ G+ + +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLV 56
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 80.2 bits (199), Expect = 2e-18
Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 196 DTAGQEDYD-RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLV 252
D Q D L+ D FL+ FSV SF V E + + P +LV
Sbjct: 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILV 115
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + +S E+G LA L K++E SA + +F+
Sbjct: 116 GNKSDLAR------------SREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEG 160
Score = 76.8 bits (190), Expect = 3e-17
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQED 123
K ++VG+ VGK+ L ++ + + D Y +M+ E TL ++D Q D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 124 YD-RLRPLSYPQTDVFLVCF 142
L+ D FL+ F
Sbjct: 64 AGGWLQDHCLQTGDAFLIVF 83
Score = 56.0 bits (136), Expect = 8e-10
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTL 53
K ++VG+ VGK+ L ++ + + D Y +M+ E TL
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTL 53
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 77.2 bits (191), Expect = 3e-17
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-----PFL 250
DTAGQE + L Y D ++ + V + SSFEN+K W E H PF+
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFV 122
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++G +ID E +K +S + ++LAK L + SA + F+E
Sbjct: 123 ILGNKIDAEES-----------KKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEE 171
Query: 311 AILAALE 317
+AL+
Sbjct: 172 IARSALQ 178
Score = 62.2 bits (152), Expect = 8e-12
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEPYTLGLFDTAG 120
+K +++GD VGKT L+ Y +K+ +Y T+ F VTV G + T+ ++DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTV-DGDKVATMQVWDTAG 67
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE + L Y D ++ +
Sbjct: 68 QERFQSLGVAFYRGADCCVLVY 89
Score = 49.1 bits (118), Expect = 3e-07
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GD VGKT L+ Y +K+ +Y T+
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI 41
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 77.7 bits (192), Expect = 3e-17
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCQKTPFLLVG 253
+ G+ ++ L D +L+ +S+ +SFE E ++ + P +LVG
Sbjct: 65 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVG 121
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE--- 310
+ DL + +S +G A K++E SA Q +K +F+
Sbjct: 122 NKSDLVR------------XREVSVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVR 168
Query: 311 AILAALEPPEPPKKRK 326
+ + E ++R
Sbjct: 169 QVRLRRDSKEKNERRL 184
Score = 72.3 bits (178), Expect = 2e-15
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVFDNYAVTVMIGGEPYTLGLF-- 116
M + V++G+ VGK+ L + + D Y T+M+ GE T+ L
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63
Query: 117 -DTAGQEDYDRLRPLSYPQTDVFLVCF 142
+ G+ ++ L D +L+ +
Sbjct: 64 WENKGENEW--LHDHCMQVGDAYLIVY 88
Score = 53.5 bits (129), Expect = 8e-09
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVFDNYAVTVMIGGEPYTL 53
M + V++G+ VGK+ L + + D Y T+M+ GE T+
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI 58
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 75.6 bits (187), Expect = 9e-17
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255
DTAGQE++D + Y ++ FS SFE + W ++ P LV +
Sbjct: 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNK 118
Query: 256 IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAA 315
IDL + I E+ E LAK LK +++ S + VF
Sbjct: 119 IDLLD------------DSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKH 165
Query: 316 LE 317
L+
Sbjct: 166 LQ 167
Score = 64.1 bits (157), Expect = 1e-12
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
IK VVVG+GAVGK+ ++ Y F +Y T+ D + + E L L+DTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 123 DY 124
++
Sbjct: 66 EF 67
Score = 48.3 bits (116), Expect = 4e-07
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
IK VVVG+GAVGK+ ++ Y F +Y T+ D + + E L
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRL 56
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 72.5 bits (179), Expect = 1e-15
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----QKTPFL 250
DTAGQE + LR Y +D L+ FSV SF+N+ W E ++ + PF+
Sbjct: 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFV 120
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++G +ID+ E + +S E+ + ++ Y E SA + F+E
Sbjct: 121 ILGNKIDISE-------------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167
Query: 311 AILAALEPPE 320
A+ L +
Sbjct: 168 AVRRVLATED 177
Score = 66.8 bits (164), Expect = 2e-13
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GDG VGK+ L+ Y TNKF ++ T+ + + + G T+ ++DTAGQE
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Score = 51.7 bits (125), Expect = 3e-08
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
K +++GDG VGK+ L+ Y TNKF ++ T+ + + + G T+
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 72.7 bits (179), Expect = 3e-15
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
K V+VGDG GKT + + T +F +YV T+ + + + P ++DTAGQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 122 EDYDRLRPLSYPQTDVFLVCF 142
E + LR Y Q ++ F
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMF 95
Score = 71.6 bits (176), Expect = 8e-15
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255
DTAGQE + LR Y Q ++ F V S +++NV W ++ C+ P +L G +
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNK 128
Query: 256 IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+D+++ + ++ K ++Y + SA + + F
Sbjct: 129 VDIKDRKVK--------------AKSIVFHRK-KNLQYYDISAKSNYNFEKPF 166
Score = 52.7 bits (127), Expect = 3e-08
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
K V+VGDG GKT + + T +F +YV T+ + + + P
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 70.3 bits (173), Expect = 1e-14
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
DTAGQE R R ++ Y T +V + V S SF NVK +W+ EI +C +LV
Sbjct: 64 DTAGQE---RFRTITSTYYRGTHGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILV 119
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + D E +K + E K A ++ ++ E SA ++ +F+
Sbjct: 120 GNKNDDPE------------RKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNC 164
Score = 63.3 bits (155), Expect = 3e-12
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+ LL+ + N F Y+ T+ D TV I GE L ++DTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 123 DY 124
+
Sbjct: 70 RF 71
Score = 48.7 bits (117), Expect = 3e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+ LL+ + N F Y+ T+
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI 42
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 71.2 bits (175), Expect = 1e-14
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE L+ + Y ++ F V S + +N+ +WV E P ++
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCAN 125
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+ID++ ++ IS + ++ K K +Y E SA T F
Sbjct: 126 KIDIKN------------RQKISKKLVMEVLKG-KNYEYFEISAKTAHNFGLPF 166
Score = 70.8 bits (174), Expect = 1e-14
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT--VFDNYAVTVMIGGEPYTLGLFDTAG 120
T K ++GDG VGKT + +F Y T ++ + G ++DTAG
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 121 QEDYDRLRPLSYPQTDVFLVCF 142
QE L+ + Y ++ F
Sbjct: 71 QEKKAVLKDVYYIGASGAILFF 92
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 73.5 bits (180), Expect = 1e-14
Identities = 18/134 (13%), Positives = 48/134 (35%), Gaps = 18/134 (13%)
Query: 193 SLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLV 252
+D GQE ++ V+++ + N W+ I + K+P ++V
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVV 156
Query: 253 GTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 312
+ID I ++ + ++ ++ S G++++ +++
Sbjct: 157 MNKIDENP------------SYNIEQKKINERFPAIEN-RFHRISCKNGDGVESIA-KSL 202
Query: 313 LAALEPPEPPKKRK 326
+A+ P+
Sbjct: 203 KSAVLHPDSIYGTP 216
Score = 55.4 bits (133), Expect = 1e-08
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT---------VFDNYAVTVMIGGEPY 111
+Q IK ++GDG GKT LL F + T + + +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 112 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+D GQE ++ V+++
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLL 129
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 69.9 bits (172), Expect = 2e-14
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE + L P+ Y + ++ + + SF +K KWV E+ H + + G
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGN 136
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + + + + ++ A+ + VE SA ++ +F + I
Sbjct: 137 KCDLSD------------IREVPLKDAKEYAESIG-AIVVETSAKNAINIEELF-QGISR 182
Query: 315 ALEPPEPPK 323
+ P +P +
Sbjct: 183 QIPPLDPHE 191
Score = 59.5 bits (145), Expect = 8e-11
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
++ +K ++GD VGK+ ++ + + F PT+ TV G E + ++DTA
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 120 GQEDY 124
GQE +
Sbjct: 81 GQERF 85
Score = 46.5 bits (111), Expect = 2e-06
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
++ +K ++GD VGK+ ++ + + F PT+
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTI 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 70.0 bits (172), Expect = 2e-14
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ + + D L+ + V SF N++ +WV I + P +L
Sbjct: 83 DTAGQE---RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIML 138
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+R+ A QK + GEKLA + E SA +
Sbjct: 139 VGNKADIRDTAA------TEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLH 190
Score = 63.5 bits (155), Expect = 3e-12
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K V+ GD AVGK+ L+ N+F T+ ++ + T+++ GE L L+DTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 123 DY 124
+
Sbjct: 89 RF 90
Score = 48.4 bits (116), Expect = 5e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+ GD AVGK+ L+ N+F T+
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 69.6 bits (171), Expect = 2e-14
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R ++ Y ++ + + +F+++ KW+ I + + LL
Sbjct: 81 DTAGQE---RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLL 136
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG ++D + I+ +QGEK A+++ +++ E SA + +F +
Sbjct: 137 VGNKLDCET------------DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183
Score = 63.0 bits (154), Expect = 5e-12
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
++ +++G VGKT L+ +T + F TV ++ + TV + G+ L ++DTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 123 DY 124
+
Sbjct: 87 RF 88
Score = 48.4 bits (116), Expect = 6e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
++ +++G VGKT L+ +T + F TV
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV 59
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 69.7 bits (171), Expect = 3e-14
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 16/131 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAG E + L P + V +V + + + +SF+ KW+ ++ +LVG
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGN 129
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + ++ +S E+GE+ AKEL V ++E SA +K +F + A
Sbjct: 130 KTDLAD------------KRQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLF-RRVAA 175
Query: 315 ALEPPEPPKKR 325
AL E + R
Sbjct: 176 ALPGMESTQDR 186
Score = 59.6 bits (145), Expect = 9e-11
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 48 GEPYTLGLNFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMI 106
G + G +F ++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ +
Sbjct: 1 GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL 60
Query: 107 GGEPYTLGLFDTAGQEDYDRLRPL--SY 132
L L+DTAG E R R L SY
Sbjct: 61 EDRTVRLQLWDTAGLE---RFRSLIPSY 85
Score = 45.8 bits (109), Expect = 5e-06
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V +G+ +VGKT L+ + + F + Y T+
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 68.4 bits (168), Expect = 4e-14
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE + L P + V +V + + + +SF KW+ ++ T +LVG
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGN 127
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + ++ +S E+GE+ AKEL V ++E SA +K +F + A
Sbjct: 128 KTDLSD------------KRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLF-RRVAA 173
Query: 315 AL 316
AL
Sbjct: 174 AL 175
Score = 58.3 bits (142), Expect = 1e-10
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 56 NFARTMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLG 114
+F ++ K V +G+ +VGKT L+ + + F + Y T+ D + T+ + L
Sbjct: 7 DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQ 66
Query: 115 LFDTAGQEDYDRLRPL--SY 132
L+DTAGQE R R L SY
Sbjct: 67 LWDTAGQE---RFRSLIPSY 83
Score = 45.3 bits (108), Expect = 5e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V +G+ +VGKT L+ + + F + Y T+
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 47
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 68.1 bits (167), Expect = 1e-13
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y + ++ + + SSF +V W+ ++ + LL
Sbjct: 84 DTAGQE---RFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLL 139
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G + DL E + +S + + LA+ + +E SA ++ F
Sbjct: 140 IGNKSDLSE------------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186
Score = 63.4 bits (155), Expect = 4e-12
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V+VGD +VGKTC++ + T F T+ D T+ I G+ L ++DTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 123 DY 124
+
Sbjct: 90 RF 91
Score = 48.8 bits (117), Expect = 4e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V+VGD +VGKTC++ + T F T+
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 66.4 bits (163), Expect = 2e-13
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + L P+ Y ++ ++ + + SF+ VK WV E+ +VG
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGN 119
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+IDL + ++ +S ++ E A+ + K+ SA KG++ +F +
Sbjct: 120 KIDLEK------------ERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLD 162
Score = 60.6 bits (148), Expect = 3e-11
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++G+G VGKT L++ Y NKF +++ T+ + IGG+ L ++DTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 123 DY 124
+
Sbjct: 67 RF 68
Score = 46.7 bits (112), Expect = 1e-06
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++G+G VGKT L++ Y NKF +++ T+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL 39
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 66.0 bits (162), Expect = 3e-13
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE Y L P+ Y ++ F V + +SFE K KWV E+ L G
Sbjct: 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGN 125
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ DL + + ++ E + A+E + ++E SA T +K +F I
Sbjct: 126 KSDLLD------------ARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIF-YEIAR 171
Query: 315 ALEPPEPPK 323
L +P +
Sbjct: 172 RLPRVQPTE 180
Score = 59.1 bits (144), Expect = 1e-10
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++GD GK+ L++ + ++F T+ ++ T+ + ++DTAGQE
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 123 DY 124
Y
Sbjct: 73 RY 74
Score = 46.0 bits (110), Expect = 3e-06
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD GK+ L++ + ++F T+
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI 45
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 66.6 bits (163), Expect = 3e-13
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFL 250
DTAGQE R R L+ + FL+ F + S SF NV W+ ++ + C+ +
Sbjct: 90 DTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIV 145
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
L+G + DL + Q+ ++ Q +LA + + Y E SA T + ++ +
Sbjct: 146 LIGNKADLPD------------QREVNERQARELADKYG-IPYFETSAATGQNVEKAVET 192
Score = 60.4 bits (147), Expect = 6e-11
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF------ 116
IK + +GD VGKT L YT NKF +++ TV D V+ +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 117 ----DTAGQEDY 124
DTAGQE +
Sbjct: 86 LQLWDTAGQERF 97
Score = 50.8 bits (122), Expect = 1e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT L YT NKF +++ TV
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 58
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 65.6 bits (161), Expect = 4e-13
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAGQE Y L P+ Y +V + + + SF K WV E+ L G
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGN 119
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ + F++ + A + + ++E SA T + +F
Sbjct: 120 KADLAN------------KRAVDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMA 162
Score = 59.8 bits (146), Expect = 4e-11
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
+ K V++G+ AVGK+ L++ + +F T+ TV + ++DTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 120 GQEDY 124
GQE Y
Sbjct: 64 GQERY 68
Score = 46.4 bits (111), Expect = 2e-06
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+ K V++G+ AVGK+ L++ + +F T+
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI 39
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 66.1 bits (162), Expect = 5e-13
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT-----PFL 250
DTAGQE + L Y D ++ F V +P++F+ + W E PF+
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFV 121
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
++G +IDL + ++ ++ + + Y E SA ++ F
Sbjct: 122 VLGNKIDLEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168
Query: 311 AILAALE 317
AL+
Sbjct: 169 IARNALK 175
Score = 65.4 bits (160), Expect = 9e-13
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGKT L+ Y KF ++Y T+ D VM+ T+ ++DTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 123 DYDRLRPLSYPQTDVFLVCF 142
+ L Y D ++ F
Sbjct: 69 RFQSLGVAFYRGADCCVLVF 88
Score = 50.0 bits (120), Expect = 2e-07
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
+K +++GD VGKT L+ Y KF ++Y T+ D VM+ T+
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTM 59
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 65.7 bits (161), Expect = 5e-13
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 63 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
T+K +++G+ VGK+ LL+ +T + F E T+ D T+ + G L ++DTAGQ
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 122 EDY 124
E +
Sbjct: 75 ERF 77
Score = 63.4 bits (155), Expect = 3e-12
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP--FLLVG 253
DTAGQE + L P Y ++ + V +F + W+ E+ +C + +LVG
Sbjct: 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVG 128
Query: 254 TQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ID + + + +G K A++ + ++E SA T G++ F+E
Sbjct: 129 NKIDK-------------ENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEE 171
Score = 49.6 bits (119), Expect = 2e-07
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
T+K +++G+ VGK+ LL+ +T + F E T+
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATI 48
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 65.7 bits (161), Expect = 5e-13
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y FL+ + + + SF V+ W +I T+ +L
Sbjct: 77 DTAGQE---RYRTITTAYYRGAMGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVIL 132
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DL + ++ + E G +LA +L ++ E SA +K VF+
Sbjct: 133 VGNKCDLED------------ERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFER 178
Score = 64.2 bits (157), Expect = 2e-12
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ +VGKT L Y + F +V TV ++ V TV + L ++DTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 123 DY 124
Y
Sbjct: 83 RY 84
Score = 49.5 bits (119), Expect = 2e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 65.2 bits (160), Expect = 6e-13
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAG E + L P+ Y + ++ + + +F +K WV E+ H + G
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGN 119
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + + + A + +VE SA + +F E
Sbjct: 120 KCDLTD------------VREVMERDAKDYADSIH-AIFVETSAKNAININELFIE 162
Score = 59.8 bits (146), Expect = 4e-11
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTA 119
++ +K ++GD VGK+ ++ + + F PT+ ++ TV E + ++DTA
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 120 GQEDYDRLRPL--SY 132
G E R R L Y
Sbjct: 64 GLE---RFRALAPMY 75
Score = 46.7 bits (112), Expect = 1e-06
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
++ +K ++GD VGK+ ++ + + F PT+
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI 39
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 65.3 bits (160), Expect = 6e-13
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y F++ + + + SF V+ W +I T+ +L
Sbjct: 78 DTAGQE---RYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVIL 133
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+ E ++ + E+G+ LA++L + E SA ++ F+
Sbjct: 134 VGNKCDMEE------------ERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFER 179
Score = 62.6 bits (153), Expect = 7e-12
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ +VGKT L Y + F +V TV ++ V TV + L ++DTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 123 DY 124
Y
Sbjct: 84 RY 85
Score = 48.4 bits (116), Expect = 4e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV 56
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 65.3 bits (160), Expect = 7e-13
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CQKTPFL 250
DTAG E R R L+ + FL+ F + + SF NV W+ ++ H + +
Sbjct: 76 DTAGLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIV 131
Query: 251 LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
L G + DL + Q+ + E+ +LA++ + Y E SA + + +
Sbjct: 132 LCGNKSDLED------------QRAVKEEEARELAEKYG-IPYFETSAANGTNISHAIEM 178
Score = 59.2 bits (144), Expect = 1e-10
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-----------FDNYAVTVMIGGEPYT 112
IK + +GD VGKT +L YT KF S+++ TV N + G+
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 113 LGLFDTAGQEDY 124
L L+DTAG E +
Sbjct: 72 LQLWDTAGLERF 83
Score = 50.7 bits (122), Expect = 1e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
IK + +GD VGKT +L YT KF S+++ TV
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV 44
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 65.0 bits (159), Expect = 1e-12
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y +V + V SF NVK +W+ EI + + LLVG
Sbjct: 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGN 146
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL +K + + ++ A L + ++E SA ++ F
Sbjct: 147 KCDLTT------------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 189
Score = 63.1 bits (154), Expect = 6e-12
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ + + + Y+ T+ D T+ + G+ L ++DTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 123 DY 124
+
Sbjct: 94 RF 95
Score = 48.4 bits (116), Expect = 6e-07
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ + + + Y+ T+
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI 66
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 64.5 bits (158), Expect = 1e-12
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y ++ + + + SF+N++ W+ I H ++
Sbjct: 63 DTAGQE---RFRTITTAYYRGAMGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMI 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G + D+ + ++ +S E+GEKLA + +K++E SA ++N F
Sbjct: 119 LGNKCDVND------------KRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFT 164
Score = 63.0 bits (154), Expect = 4e-12
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++GD VGKTC+L ++ + F S ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 123 DY 124
+
Sbjct: 69 RF 70
Score = 48.7 bits (117), Expect = 4e-07
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGKTC+L ++ + F S ++ T+
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 64.5 bits (158), Expect = 1e-12
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +V+GD VGKTCL + +FP T+ D V I GE + L+DTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 123 DY 124
+
Sbjct: 81 RF 82
Score = 61.5 bits (150), Expect = 2e-11
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 26/123 (21%)
Query: 196 DTAGQEDYDRLRPLS-----YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKT--P 248
DTAGQE R R S Y + + + + +SF ++ W+ E H P
Sbjct: 75 DTAGQE---RFRK-SMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIP 129
Query: 249 FLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVF 308
+LVG + DLR + + +K A + E SA +V
Sbjct: 130 RILVGNKCDLRS------------AIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHV- 175
Query: 309 DEA 311
+
Sbjct: 176 EAI 178
Score = 49.5 bits (119), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +V+GD VGKTCL + +FP T+
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 64.1 bits (157), Expect = 1e-12
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTP-FLL 251
DTAGQE R R ++ Y L+ + V + +SF+N++ W+ EI + Q +L
Sbjct: 66 DTAGQE---RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALML 121
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G ++D ++ + E GEKLAKE + ++E SA T + F
Sbjct: 122 LGNKVDSAH------------ERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTA 167
Score = 60.3 bits (147), Expect = 3e-11
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 121
K ++VGD VGKTCLL+ + F + ++ TV D + + G L ++DTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 122 EDY 124
E +
Sbjct: 71 ERF 73
Score = 46.0 bits (110), Expect = 3e-06
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSE-YVPTV 36
K ++VGD VGKTCLL+ + F + ++ TV
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 64.1 bits (157), Expect = 2e-12
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +V+G+ GK+CLL + KF + T+ + + + +GG+ L ++DTAGQE
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 124 Y 124
+
Sbjct: 72 F 72
Score = 63.0 bits (154), Expect = 5e-12
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y L+ + + S ++ + W+ + + +L
Sbjct: 65 DTAGQE---RFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIIL 120
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
G + DL + ++F + + A+E + + ++E SALT + ++ F +
Sbjct: 121 CGNKKDLDA------------DREVTFLEASRFAQENE-LMFLETSALTGENVEEAFVQ 166
Score = 48.7 bits (117), Expect = 4e-07
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +V+G+ GK+CLL + KF + T+
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 64.2 bits (157), Expect = 2e-12
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y +V + V SF NVK +W+ EI + + LLVG
Sbjct: 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGN 129
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL +K + + ++ A L + ++E SA ++ F
Sbjct: 130 KCDLTT------------KKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMT 172
Score = 61.9 bits (151), Expect = 1e-11
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ + + + Y+ T+ D T+ + G+ L ++DTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 123 DY 124
+
Sbjct: 77 RF 78
Score = 47.6 bits (114), Expect = 9e-07
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ + + + Y+ T+
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI 49
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 64.2 bits (157), Expect = 2e-12
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y L+ + + ++ENV+ +W+ E+ H +L
Sbjct: 60 DTAGQE---RYRRITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIML 115
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DLR + + ++ A++ + ++E SAL ++ F
Sbjct: 116 VGNKSDLRH------------LRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKN 161
Score = 62.3 bits (152), Expect = 9e-12
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ + ++ + G+ ++DTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 124 Y 124
Y
Sbjct: 67 Y 67
Score = 48.1 bits (115), Expect = 8e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 38
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 64.2 bits (157), Expect = 2e-12
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y + ++ + + SF + +W+ EI + +LVG
Sbjct: 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGN 139
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+IDL E ++ +S ++ E+ ++ + Y+E SA ++ +F +
Sbjct: 140 KIDLAE------------RREVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLD 182
Score = 63.8 bits (156), Expect = 3e-12
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++G+ VGKTCL+ +T FP T+ D TV I GE L ++DTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 123 DY 124
+
Sbjct: 87 RF 88
Score = 49.2 bits (118), Expect = 3e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++G+ VGKTCL+ +T FP T+
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI 59
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 64.2 bits (157), Expect = 2e-12
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAG E R R ++ Y F++ + + + SF V+ W +I T+ LL
Sbjct: 63 DTAGLE---RYRTITTAYYRGAMGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLL 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+ + ++ +S E+G +LA L ++ E SA +K F+
Sbjct: 119 VGNKCDMED------------ERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFER 164
Score = 62.7 bits (153), Expect = 7e-12
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++G+ +VGKT L Y + F +V TV D T+ + L ++DTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 123 DY 124
Y
Sbjct: 69 RY 70
Score = 48.8 bits (117), Expect = 4e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ +VGKT L Y + F +V TV
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV 41
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 64.2 bits (157), Expect = 2e-12
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +V+G GK+CLL + NKF + T+ + + V +GG+ L ++DTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 124 Y 124
+
Sbjct: 87 F 87
Score = 63.0 bits (154), Expect = 6e-12
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y L+ + + S ++ ++ W+ + +L G
Sbjct: 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGN 138
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ ++F + + A+E + + ++E SALT + ++ F +
Sbjct: 139 KKDLDP------------EREVTFLEASRFAQENE-LMFLETSALTGENVEEAFLK 181
Score = 48.8 bits (117), Expect = 4e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +V+G GK+CLL + NKF + T+
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI 58
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 63.7 bits (156), Expect = 2e-12
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K +++GD VGK+CLL +T KF ++ T+ + + + G+ L ++DTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 124 Y 124
+
Sbjct: 77 F 77
Score = 62.6 bits (153), Expect = 6e-12
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y L+ + + S++ ++ W+ + + T +L+G
Sbjct: 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGN 128
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL Q+ +++E+ ++ A+E + ++E SA T + +++ F E
Sbjct: 129 KADLEA------------QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLE 171
Score = 48.3 bits (116), Expect = 4e-07
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL +T KF ++ T+
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI 48
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 63.8 bits (156), Expect = 2e-12
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y L+ + + +F ++ W+ + H +L+G
Sbjct: 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGN 134
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL ++ + E+GE A+E + ++E SA T ++ F
Sbjct: 135 KSDLES------------RRDVKREEGEAFAREHG-LIFMETSAKTACNVEEAFIN 177
Score = 63.4 bits (155), Expect = 3e-12
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K +++GD VGK+CLL+ +T +F + T+ + A V I G+ L ++DTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 123 DY 124
+
Sbjct: 82 SF 83
Score = 48.7 bits (117), Expect = 4e-07
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++GD VGK+CLL+ +T +F + T+
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 63.8 bits (156), Expect = 3e-12
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLLVGT 254
DTAG E Y + Y L+ F + ++ V+ +W+ E+ H +LVG
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGN 138
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ DL + + + E+ A+ + ++E SAL ++ F+
Sbjct: 139 KSDLSQ------------AREVPTEEARMFAENNG-LLFLETSALDSTNVELAFET 181
Score = 63.0 bits (154), Expect = 4e-12
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 122
K V++G+ VGKT LL +T N+F + T+ + TVM+G ++DTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 123 DY 124
Y
Sbjct: 86 RY 87
Score = 48.4 bits (116), Expect = 5e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++G+ VGKT LL +T N+F + T+
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI 58
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 63.3 bits (155), Expect = 3e-12
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y ++ + + +F N+K +W + H LL
Sbjct: 58 DTAGQE---RFRTITTAYYRGAMGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLL 113
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + D+ + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 114 VGNKSDM-------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFT 158
Score = 62.6 bits (153), Expect = 4e-12
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L ++DTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 123 DY 124
+
Sbjct: 64 RF 65
Score = 48.3 bits (116), Expect = 4e-07
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GD VGK+CLL+ + +KF ++ T+
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI 36
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 63.8 bits (156), Expect = 3e-12
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAG E R R ++ Y L+ + + ++ENV+ +W+ E+ H +L
Sbjct: 84 DTAGLE---RYRAITSAYYRGAVGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIML 139
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DLR + + ++ A++ + ++E SAL ++ F
Sbjct: 140 VGNKSDLRH------------LRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQT 185
Score = 63.0 bits (154), Expect = 4e-12
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F E T+ + ++ + G+ ++DTAG E
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 124 Y 124
Y
Sbjct: 91 Y 91
Score = 48.0 bits (115), Expect = 6e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F E T+
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI 62
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 62.8 bits (153), Expect = 5e-12
Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQ 255
D AG+E++ P Q ++L + + + + + W+ I +P +LVGT
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTH 121
Query: 256 IDLREDAPTLEKLAKNKQKPISFEQGEKLAKELK----AVKYVECSALTQKGLKNVFDE 310
+D+ + + ++K + ++L + + + L +
Sbjct: 122 LDVSD---------EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
Score = 57.8 bits (140), Expect = 3e-10
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTV---FDNYAVTVMIGG---EPYTLGL 115
+K ++VG+ GKT LL K TV ++ + I L +
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDW--PIQIRDKRKRDLVLNV 60
Query: 116 FDTAGQEDYDRLRPLSYPQTDVFLVCF 142
+D AG+E++ P Q ++L +
Sbjct: 61 WDFAGREEFYSTHPHFMTQRALYLAVY 87
Score = 44.3 bits (105), Expect = 1e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTV 36
+K ++VG+ GKT LL K TV
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATV 37
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 62.6 bits (153), Expect = 6e-12
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 18/119 (15%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI----THHCQKTPFLL 251
D GQ ++ L+ + + + SFEN++ W + + L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVAL 120
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG +IDL + I E+ + +E SA T + F +
Sbjct: 121 VGNKIDLEH------------MRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQK 166
Score = 59.9 bits (146), Expect = 4e-11
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPY-TLGLFDTAGQ 121
+K VV+GDGA GKT L + F +Y T+ D + + + G TL ++D GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 122 EDY 124
Sbjct: 67 TIG 69
Score = 49.8 bits (120), Expect = 1e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K VV+GDGA GKT L + F +Y T+
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI 39
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 63.1 bits (154), Expect = 6e-12
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + + Y ++ + V +F N+K +W + H LLVG
Sbjct: 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGN 133
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+ D+ + + ++ +QGE LAKEL + ++E SA + +F
Sbjct: 134 KSDM-------------ETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFT 175
Score = 62.7 bits (153), Expect = 7e-12
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
+K +++GD VGK+CLL+ + +KF ++ T+ ++ + TV I G+ L L+DTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 123 DY 124
+
Sbjct: 81 RF 82
Score = 48.5 bits (116), Expect = 5e-07
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+K +++GD VGK+CLL+ + +KF ++ T+
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI 53
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 63.1 bits (154), Expect = 6e-12
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLL 251
DTAGQE R R ++ Y + ++ + V SF VK W+ EI + LL
Sbjct: 63 DTAGQE---RFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLL 118
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
VG + DL++ ++ + ++ ++ A K + ++E SAL +++ F
Sbjct: 119 VGNKCDLKD------------KRVVEYDVAKEFADANK-MPFLETSALDSTNVEDAFLT 164
Score = 62.3 bits (152), Expect = 1e-11
Identities = 20/62 (32%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 122
K +++G+ VGK+CLL+ ++ + + ++Y+ T+ ++ + TV + G+ L ++DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 123 DY 124
+
Sbjct: 69 RF 70
Score = 48.5 bits (116), Expect = 6e-07
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G+ VGK+CLL+ ++ + + ++Y+ T+
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI 41
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 62.1 bits (151), Expect = 6e-12
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 61 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 119
+ +IK V++G+ AVGK+ +++ + +N F PT+ V I ++DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 120 GQEDYDRLRPLSYPQTDVFLVCF 142
GQE + L P Y LV +
Sbjct: 61 GQERFASLAPXYYRNAQAALVVY 83
Score = 59.0 bits (143), Expect = 8e-11
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 196 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK-TPFLLVGT 254
DTAGQE + L P Y LV + V P SF + WV E+ K LVG
Sbjct: 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGN 116
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILA 314
+ID ++ ++ ++ E+GEKLA+E + + E SA T + + +VF I
Sbjct: 117 KIDXLQEGG---------ERKVAREEGEKLAEEK-GLLFFETSAKTGENVNDVF-LGIGE 165
Query: 315 AL 316
+
Sbjct: 166 KI 167
Score = 47.9 bits (114), Expect = 6e-07
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
+ +IK V++G+ AVGK+ +++ + +N F PT+
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI 36
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 62.7 bits (153), Expect = 8e-12
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 18/122 (14%)
Query: 194 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI----THHCQKTPF 249
L DTAG + Y + ++ F V S SFE+ K W + +
Sbjct: 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRA 135
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSA-LTQKGLKNVF 308
+LV + DL ++ + + + A + + + SA K F
Sbjct: 136 VLVANKTDLPP-----------QRHQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPF 183
Query: 309 DE 310
Sbjct: 184 LS 185
Score = 59.6 bits (145), Expect = 1e-10
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 65 KCVVVGDGAVGKTCLLISYT--TNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGL--FDTA 119
K VVG+ VGK+ L+ +T +KF +Y T + V I ++ L DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 120 GQEDY 124
G + Y
Sbjct: 82 GSDLY 86
Score = 46.1 bits (110), Expect = 3e-06
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 5 KCVVVGDGAVGKTCLLISYT--TNKFPSEYVPTV-FDNYAVTVMIGGEPYTL 53
K VVG+ VGK+ L+ +T +KF +Y T + V I ++
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSV 73
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 62.4 bits (152), Expect = 1e-11
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 123
K V++GD VGK+ LL +T N+F + T+ + T+ I G+ ++DTAGQE
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 124 Y 124
Y
Sbjct: 75 Y 75
Score = 61.6 bits (150), Expect = 2e-11
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 21/119 (17%)
Query: 196 DTAGQEDYDRLRPLS---YPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCQKTPFLL 251
DTAGQE R R ++ Y L+ + + SS+EN W+ E+ + L
Sbjct: 68 DTAGQE---RYRAITSAYYRGAVGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGL 123
Query: 252 VGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
+G + DL + + E+ + A+E + + + E SAL + + F+E
Sbjct: 124 IGNKSDLAH------------LRAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFEE 169
Score = 48.2 bits (115), Expect = 9e-07
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K V++GD VGK+ LL +T N+F + T+
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI 46
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 58.5 bits (141), Expect = 4e-10
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 196 DTAGQEDY--DRLRPLSYPQTDVFLVCFSV--VSPSSFENVKEKWVPEITHHCQKT--PF 249
D G E + P D FL+ V +F++ K+V + + KT P
Sbjct: 143 DQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPI 201
Query: 250 LLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFD 309
++V T+ D ++ I L+K+ ++ VE SA + + F
Sbjct: 202 VVVLTKCDEGV------------ERYIRDAHTFALSKK--NLQVVETSARSNVNVDLAFS 247
Query: 310 E 310
Sbjct: 248 T 248
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 2e-07
Identities = 46/330 (13%), Positives = 91/330 (27%), Gaps = 101/330 (30%)
Query: 22 SYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT---LGLNFARTMQTIKCVVVGDGAVGKTC 78
Y + VF Y V+ + +PY L R + + ++ G GKT
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRL---QPYLKLRQALLELRPAKNV--LIDGVLGSGKTW 165
Query: 79 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPY--TLGLFDTAGQEDYDRLRPLSYPQTD 136
+ + V +Y V + + + L ++ + + L+ L Y
Sbjct: 166 VALD-------------VCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDP 211
Query: 137 VFLVCFGNMMNIRRSVDWN----RKLGGWFWFISTEHSPPMKLHTLGFITNINPGWV--- 189
+ + NI+ + R+L S + + L + N+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYE-----NCLLVLLNVQNAKAWNA 261
Query: 190 -----------RDRSLFDTAGQEDY------DRLRPLSYPQTDVFLVCFSVVSPSSFENV 232
R + + D L+ + L + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--------LKYLDC 313
Query: 233 KEKWVPEITHHCQKTPFL--LVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA 290
+ + +P P ++ +R+ T +
Sbjct: 314 RPQDLPREV--LTTNPRRLSIIAES--IRDGLATWDNW---------------------- 347
Query: 291 VKYVECSALTQKGLKNVFDEAILAALEPPE 320
K+V C LT + E+ L LEP E
Sbjct: 348 -KHVNCDKLT-----TII-ESSLNVLEPAE 370
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 46.3 bits (110), Expect = 3e-06
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 55 LNFARTMQTIKCVVVGDGAVGKTCLL----------ISYTTNKFPSEYVPTVFDNYAVTV 104
+NFA K V G G GKT L +E T+F ++
Sbjct: 6 INFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLD 65
Query: 105 M--IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTD--VFLV 140
+ + G L+ GQ Y+ R L D VF+
Sbjct: 66 IGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVA 105
Score = 40.9 bits (96), Expect = 2e-04
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 30/146 (20%)
Query: 177 TLGF-ITNINPGWVRDRS----LFDTAGQEDYDRLRPLSYPQTD--VFLV------CFSV 223
TL F ++ G V+ L+ GQ Y+ R L D VF+ +
Sbjct: 56 TLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRA- 114
Query: 224 VSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEK 283
+ S N++E + E P ++ + DL DA +E +
Sbjct: 115 -NAESMRNMREN-LAEYGLTLDDVPIVIQVNKRDL-PDALPVEMVR------------AV 159
Query: 284 LAKELKAVKYVECSALTQKGLKNVFD 309
+ E K +E A KG+
Sbjct: 160 VDPEGK-FPVLEAVATEGKGVFETLK 184
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 36.5 bits (84), Expect = 0.008
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 65 KCVVVGDGAVGKTCLLISYTTNKFPSEYV----PTVFDNYAVTVMIGGEPYTLGLFDTAG 120
K +++G GK+ + S + + + T+ + + TL L+D G
Sbjct: 5 KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVE--HSHLRFLGNMTLNLWDCGG 61
Query: 121 QEDY-----DRLRPLSYPQTDVFLVCF 142
Q+ + + + + V + F
Sbjct: 62 QDVFMENYFTKQKDHIFQMVQVLIHVF 88
Score = 27.3 bits (60), Expect = 8.5
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
K +++G GK+ + S + + + +
Sbjct: 5 KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRL 35
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 34.7 bits (80), Expect = 0.024
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 67 VVVG-DGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD 125
+ VG + GKT L + T ++ + ++ D+ A+ + +L L D G E
Sbjct: 11 LFVGLCDS-GKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE--- 65
Query: 126 RLRPLS----YPQTD--VFLV 140
LR VF+V
Sbjct: 66 SLRFQLLDRFKSSARAVVFVV 86
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 34.9 bits (80), Expect = 0.028
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 13/111 (11%)
Query: 200 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLR 259
+D+ R+ + + + + P + LLVG + DL
Sbjct: 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWL------PGLHRFVGNNKVLLVGNKADL- 108
Query: 260 EDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
P K K K + + LK SA +G+ + D
Sbjct: 109 --IPKSVKHDKVKH----WMRYSAKQLGLKPEDVFLISAAKGQGIAELADA 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.030
Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 59/196 (30%)
Query: 38 DNYAVTVMIGGEPYTL-GLNFARTMQTIKCVVVGDGAVGKTCLLISYT------TNKF-- 88
N V+ G P +L GLN T++ K D + + I ++ +N+F
Sbjct: 375 KNLVVS----GPPQSLYGLN--LTLRKAKAPSGLDQS--R----IPFSERKLKFSNRFLP 422
Query: 89 ---P--SEY----VPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 138
P S + D V + + ++DT D LR LS ++
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD---LRVLSGSISER- 478
Query: 139 LVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSP-------PMKLHTLGFITNINP-G-WV 189
+V IR V W +T+ P LG +T+ N G V
Sbjct: 479 IV----DCIIRLPVKWET---------TTQFKATHILDFGPGGASGLGVLTHRNKDGTGV 525
Query: 190 R--DRSLFDTAGQEDY 203
R D +DY
Sbjct: 526 RVIVAGTLDINPDDDY 541
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 32.9 bits (76), Expect = 0.074
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 67 VVVG-DGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD 125
+VG + GKT + + +F + +PTV N + G T+ L+D GQ
Sbjct: 26 TLVGLQYS-GKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQ---P 78
Query: 126 RLRPL---SYPQTD--VFLV 140
R R + V++V
Sbjct: 79 RFRSMWERYCRGVSAIVYMV 98
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 33.8 bits (77), Expect = 0.078
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 17/112 (15%)
Query: 201 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRE 260
+D+ + + + + + P + P LLVG + DL
Sbjct: 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFI------PGLPRFAADNPILLVGNKADL-- 110
Query: 261 DAPTLEKLAKNKQ--KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDE 310
P K K + + ++ E G L V SA G+ V +
Sbjct: 111 -LPRSVKYPKLLRWMRRMAEELG------LCPVDVCLVSAAKGIGMAKVMEA 155
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.9 bits (73), Expect = 0.29
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 30/137 (21%)
Query: 194 LFDTAGQEDYDRLRPL-------SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQK 246
L DT G +D L L + + D ++ V + ++ V +
Sbjct: 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGIL---VTDSAPTPY-EDDVVNLFKE--ME 140
Query: 247 TPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKN 306
PF++V +ID+ + E+ + L + K + SAL +KG +
Sbjct: 141 IPFVVVVNKIDVLGEKA---------------EELKGLYESRYEAKVLLVSALQKKGFDD 185
Query: 307 VFDEAILAAL-EPPEPP 322
+ + I L E P
Sbjct: 186 IG-KTISEILPGDEEIP 201
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 31.1 bits (70), Expect = 0.37
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 64 IKCVVVGDGAVGKTCLLISYTTNKFPSE---YVPTVFDNYAVTVMIGGEPYTLGLFDTAG 120
+ +++G GK+ + P+E T + ++D G
Sbjct: 21 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78
Query: 121 QEDYDRL---RPLSYPQTDVFLVCFGNMMNIRRSVDW 154
Q D+ + + T + + ++
Sbjct: 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTR 115
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 31.1 bits (71), Expect = 0.47
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 19/55 (34%)
Query: 40 YAVTVMIG------GEPYTLGLNFA-----------RTMQTIKCVVVGD--GAVG 75
+ +G EP + G F K + GAVG
Sbjct: 131 TKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVG 185
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 31.0 bits (70), Expect = 0.56
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 19/83 (22%)
Query: 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA--VKYVECSALTQKG 303
PFL+V +ID+ ++ E ++L K +K + ++ SAL G
Sbjct: 280 DLPFLVVINKIDVADE-----------------ENIKRLEKFVKEKGLNPIKISALKGTG 322
Query: 304 LKNVFDEAILAALEPPEPPKKRK 326
+ V +E I E + K
Sbjct: 323 IDLVKEEIIKTLRPLAEKVAREK 345
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 30.5 bits (70), Expect = 0.61
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPE-ITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQ 273
DV V + VV +++ V + K P LLVG ++D AK +
Sbjct: 86 DVNAVVW-VVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD----------AAKYPE 134
Query: 274 KPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPP 322
+ + + + L + SAL ++ + + + L AL P P
Sbjct: 135 EAM-----KAYHELLPEAEPRMLSALDERQVAELKAD--LLALMPEGPF 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 30.3 bits (69), Expect = 0.62
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 248 PFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNV 307
L++ T+ D KLA +K E + V+ S+L ++G+ +
Sbjct: 139 AVLVLLTKAD---------KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL 189
Query: 308 FD--EAILAALEPPEPPKK 324
+ + ++P E +
Sbjct: 190 RQKLDTWFSEMQPVEETQD 208
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 30.1 bits (68), Expect = 0.69
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 246 KTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLK 305
++ +ID + L+ + + I + L +K+ S LT G++
Sbjct: 142 NKSIVIGFNKIDKCNM----DSLSIDNKLLIK----QILDNVKNPIKFSSFSTLTGVGVE 193
Query: 306 NVFDEAI 312
A
Sbjct: 194 QAKITAC 200
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 30.5 bits (70), Expect = 0.74
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 14/108 (12%)
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274
+ ++ F ++ + +++ + + P ++V +ID A + L K
Sbjct: 92 EADVILF-MIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHK 150
Query: 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPP 322
K + + V SAL L + IL L P P
Sbjct: 151 -----------KHPELTEIVPISALKGANLDELVKT-ILKYL-PEGEP 185
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 30.4 bits (69), Expect = 0.76
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPPKKRKC 327
+KL+ L V V SAL Q G+ V +A
Sbjct: 130 DKLSYHLG-VPVVATSALKQTGVDQVVKKAAHTTTSTVGDLAFPIY 174
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 30.4 bits (69), Expect = 0.89
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 19/55 (34%)
Query: 40 YAVTVMIG------GEPYTLGLNFA-----------RTMQTIKCVVVGD--GAVG 75
+ T+M+G EP T GL R Q V VG GAVG
Sbjct: 142 HKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAVG 196
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 29.9 bits (68), Expect = 1.1
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 19/55 (34%)
Query: 40 YAVTVMIG------GEPYTLGLNFA-----------RTMQTIKCVVVGD--GAVG 75
Y T IG EP + GL R + I+ V G GAVG
Sbjct: 130 YKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVG 184
>3evp_A Circular-permutated green fluorescent protein; EGFP, chromophore,
luminescence, photoprotein, signaling protein; HET: CRO;
1.45A {Aequorea victoria}
Length = 243
Score = 29.6 bits (66), Expect = 1.2
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 231 NVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPI 276
N+++ V H+ Q TP +G L D L +K + P
Sbjct: 26 NIEDGGVQLAYHYQQNTP---IGDGPVLLPDNHYLSTQSKLSKDPN 68
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 29.2 bits (66), Expect = 1.5
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPPKKR 325
+L K L + V S++T +GL+ + ++ + A + +
Sbjct: 133 YELQKHLG-IPVVFTSSVTGEGLEELKEKIVEYAQKNTILHRMI 175
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 29.7 bits (66), Expect = 1.6
Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 18/143 (12%)
Query: 195 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGT 254
+ L + + + D F++ +S + F+ I+ K F V T
Sbjct: 130 IGSTNFPPDTYLEKMKFYEYDFFII----ISATRFKKNDIDIAKAISMM--KKEFYFVRT 183
Query: 255 QIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA-------VKYVECSALTQKGLKNV 307
++D + ++ + + + + + + +
Sbjct: 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVL 243
Query: 308 FDEAILAALEPPEPPKKRKCVLL 330
+ +++ L P KR ++
Sbjct: 244 M-DKLISDL----PIYKRHNFMV 261
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 29.4 bits (67), Expect = 1.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 60 TMQTIKCVVVGDGAVGKTC 78
T++ K V+G GAVG T
Sbjct: 4 TVKPTKLAVIGAGAVGSTL 22
Score = 27.9 bits (63), Expect = 4.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1 MQTIKCVVVGDGAVGKTC 18
++ K V+G GAVG T
Sbjct: 5 VKPTKLAVIGAGAVGSTL 22
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 29.4 bits (67), Expect = 1.8
Identities = 29/153 (18%), Positives = 45/153 (29%), Gaps = 58/153 (37%)
Query: 60 TMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 119
K V+VG+G G + + Y VTV I EP
Sbjct: 5 HHHGSKVVIVGNGPGGFELA-----------KQLS---QTYEVTV-IDKEPVP------- 42
Query: 120 GQEDYDRLRPLSY------PQTDVFLVCFGNMMNIRRSVDWNRKLGGWFWFISTEHSPPM 173
Y + LS+ P+ +F S+DW RK G +
Sbjct: 43 ---YYSKPM-LSHYIAGFIPRNRLFP----------YSLDWYRKRG-------------I 75
Query: 174 KLHTLGFITNINPGWVRDRSLFDTAGQEDYDRL 206
++ I+ + + G+ YD L
Sbjct: 76 EIRLAEEAKLIDR---GRKVVITEKGEVPYDTL 105
Score = 27.9 bits (63), Expect = 5.0
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 18/61 (29%)
Query: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLNFART 60
K V+VG+G G + + Y VTV I EP +++
Sbjct: 6 HHGSKVVIVGNGPGGFELA-----------KQLS---QTYEVTV-IDKEPV---PYYSKP 47
Query: 61 M 61
M
Sbjct: 48 M 48
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 28.8 bits (65), Expect = 2.2
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPPK 323
EKL L + A G+ + ++L + +P K
Sbjct: 133 EKLESLLG-CSVIPIQAHKNIGIPALQQ-SLLHCSQKIKPLK 172
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 28.7 bits (65), Expect = 2.5
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 21/80 (26%)
Query: 248 PFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKA--VKYVECSALTQKGLK 305
P L+ ++DL E+ E + LA L + + SALT GL
Sbjct: 271 PSLVALNKVDLLEE-----------------EAVKALADALAREGLAVLPVSALTGAGLP 313
Query: 306 NVFDEA--ILAALEPPEPPK 323
+ + ++ + PPE PK
Sbjct: 314 ALKEALHALVRSTPPPEMPK 333
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 28.7 bits (65), Expect = 2.9
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 101 AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145
A ++ G+P L L D+ ++ +T + + + N
Sbjct: 148 AGVLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNN 192
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 28.4 bits (64), Expect = 3.1
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPPKKR 325
+K+ KEL V + +A +G++ + L A
Sbjct: 132 KKMRKELG-VPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPII 174
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 27.9 bits (63), Expect = 3.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 282 EKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPPK 323
+KL K L VK V SA + G++ + AI A++ + +
Sbjct: 135 DKLEKILG-VKVVPLSAAKKMGIEELKK-AISIAVKDKKTAE 174
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.2 bits (64), Expect = 3.3
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 215 DVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQK 274
DV LV F VV + + ++ V K P +L ++D ++ L
Sbjct: 88 DVELVIF-VVEGTRWTP-DDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHL----- 139
Query: 275 PISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPP 322
+ LA ++ + V SA T + + + L P
Sbjct: 140 -------QFLASQMNFLDIVPISAETGLNVDTIAAI-VRKHL-PEATH 178
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 28.3 bits (64), Expect = 3.7
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 101 AVTVMIGGEPYTLGLFDTAG-QEDYDRLRPLSYPQTDVFLVCFGNM 145
V+ G + ++ L + +R S P+ + ++ F +
Sbjct: 138 YGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSN 183
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.5 bits (62), Expect = 4.3
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 230 ENVKEKWVPEITHHCQKTPFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQG---EKLAK 286
+ E W I K P +V + D+ + + ++ + +S G + L
Sbjct: 99 VDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRN 158
Query: 287 ELKAV 291
LK
Sbjct: 159 HLKQS 163
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 28.0 bits (62), Expect = 4.4
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 89 PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL--RPLS 131
+Y+ + D+ ++ V +G F ++ L PLS
Sbjct: 190 VQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLS 234
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB:
3bg0_B 3iko_B
Length = 442
Score = 28.2 bits (62), Expect = 4.8
Identities = 2/28 (7%), Positives = 7/28 (25%)
Query: 144 NMMNIRRSVDWNRKLGGWFWFISTEHSP 171
++ + W L + +
Sbjct: 261 SLKELESEFSWLCLLNLTLCYGQIDEYS 288
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 27.8 bits (63), Expect = 4.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 59 RTMQTIKCVVVGDGAVGKTC 78
+ K V++G+GAVG +
Sbjct: 2 NKFKGNKVVLIGNGAVGSSY 21
Score = 27.1 bits (61), Expect = 7.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1 MQTIKCVVVGDGAVGKTC 18
+ K V++G+GAVG +
Sbjct: 4 FKGNKVVLIGNGAVGSSY 21
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 27.9 bits (63), Expect = 5.5
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 103 TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF-----GNMMNI---RRSVDW 154
T++ GGE + + D+ + + +T + VC G+++++ + D
Sbjct: 137 TLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDL 196
Query: 155 NRKLGGWFWFIS 166
K G F S
Sbjct: 197 QDKYG--FIIAS 206
>1pul_A Hypothetical protein C32E8.3 in chromosome I; alpha helical,
northeast structural genomics consortium, PSI, protein
structure initiative; NMR {Caenorhabditis elegans} SCOP:
a.39.1.11
Length = 125
Score = 26.7 bits (58), Expect = 5.8
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 270 KNKQKPISFEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPP 319
+K +F++ +K+ + + + Q L + LA LE P
Sbjct: 75 TGPKKKATFDETKKVLAFVAEDRARQSKKPIQDELDAIT--EKLAKLEAP 122
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator,
chaperone, periplasmic inner membrane, transmembrane;
2.50A {Escherichia coli K12}
Length = 330
Score = 27.5 bits (61), Expect = 6.5
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 5/17 (29%)
Query: 150 RSVDWNRKLGGWFWFIS 166
+VD+ GW WFIS
Sbjct: 302 LTVDY-----GWLWFIS 313
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 27.4 bits (60), Expect = 6.8
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 68 VVGDGAVGKTCLL-------ISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGLFDT 118
VVG+ +GK+ L+ + PS + V+I GG L + DT
Sbjct: 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 72
Query: 119 AGQED 123
G D
Sbjct: 73 PGFGD 77
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 27.5 bits (62), Expect = 7.4
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 100 YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFGNM 145
+ + + + L + G D + + + V L+ + N
Sbjct: 125 FGAARVASLRTFLIPLRED-GLADLKAVPEGVWREAKVLLLNYPNN 169
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 26.9 bits (60), Expect = 7.5
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 194 LFDTAGQEDYDRLRPL---SYPQTDVFLVCFSVVS--PSSFENVKEKWVPEITH-HCQKT 247
FD G + R + P + + F V KE+ +T
Sbjct: 73 TFDLGGH---IQARRVWKNYLPAING--IVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 248 PFLLVGTQIDLREDAPTLEKLAKNKQKPISFEQGEKLAKELKAVKYVE---CSALTQKGL 304
P L++G +ID +A + E+L + ++ + + +E CS L ++G
Sbjct: 128 PILILGNKIDR-PEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186
Query: 305 KNVFD 309
F
Sbjct: 187 GEGFR 191
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 27.1 bits (61), Expect = 7.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 4 IKCVVVGDGAVGKTC 18
+K +VG G VG +
Sbjct: 1 MKIGIVGLGRVGSST 15
Score = 27.1 bits (61), Expect = 7.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 64 IKCVVVGDGAVGKTC 78
+K +VG G VG +
Sbjct: 1 MKIGIVGLGRVGSST 15
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 27.1 bits (61), Expect = 8.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 60 TMQTIKCVVVGDGAVGKTC 78
+ K VVG GAVG C
Sbjct: 16 QVPQNKITVVGVGAVGMAC 34
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 27.1 bits (61), Expect = 8.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 4 IKCVVVGDGAVGKTC 18
+K +VG G VG
Sbjct: 1 MKVGIVGSGMVGSAT 15
Score = 27.1 bits (61), Expect = 8.8
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 64 IKCVVVGDGAVGKTC 78
+K +VG G VG
Sbjct: 1 MKVGIVGSGMVGSAT 15
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.0 bits (59), Expect = 9.1
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 68 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI---------GGEPYTLGLFDT 118
VG+ +GK+ L+ + F +++ + V + L + T
Sbjct: 47 CVGETGLGKSTLMDTL----FNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102
Query: 119 AGQED 123
G D
Sbjct: 103 VGFGD 107
>2od6_A Hypothetical protein; metagenomics target, structural genomics,
joint center for S genomics, JCSG, protein structure
initiative; HET: MSE OHA; 1.85A {Uncultured marine
organism} SCOP: d.58.4.22
Length = 110
Score = 26.1 bits (57), Expect = 9.3
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 20 LISYTTNKFPSE 31
S+TT F ++
Sbjct: 7 FTSFTTADFIND 18
Score = 26.1 bits (57), Expect = 9.3
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 80 LISYTTNKFPSE 91
S+TT F ++
Sbjct: 7 FTSFTTADFIND 18
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 26.8 bits (60), Expect = 9.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 5 KCVVVGDGAVGKTC 18
K VVG G +G C
Sbjct: 16 KITVVGGGELGIAC 29
Score = 26.8 bits (60), Expect = 9.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 65 KCVVVGDGAVGKTC 78
K VVG G +G C
Sbjct: 16 KITVVGGGELGIAC 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.428
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,182,601
Number of extensions: 307287
Number of successful extensions: 1278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 335
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)