Query psy9998
Match_columns 288
No_of_seqs 153 out of 333
Neff 4.4
Searched_HMMs 46136
Date Sat Aug 17 00:59:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3063|consensus 100.0 5.5E-80 1.2E-84 562.8 17.0 221 1-286 1-223 (301)
2 PF03643 Vps26: Vacuolar prote 100.0 1.5E-65 3.1E-70 477.1 27.8 215 6-285 1-215 (275)
3 KOG3063|consensus 100.0 1.2E-43 2.5E-48 324.6 8.8 195 7-204 34-295 (301)
4 PF03643 Vps26: Vacuolar prote 100.0 3E-29 6.4E-34 233.9 14.8 182 7-191 27-275 (275)
5 KOG2717|consensus 100.0 2.9E-28 6.4E-33 223.6 16.3 181 39-284 15-227 (313)
6 KOG2717|consensus 98.2 3.6E-06 7.8E-11 78.7 6.3 60 130-191 227-286 (313)
7 PF00339 Arrestin_N: Arrestin 97.7 0.0001 2.2E-09 59.9 5.9 40 37-79 9-48 (149)
8 KOG3780|consensus 97.5 0.034 7.4E-07 53.7 22.1 203 38-282 16-235 (427)
9 PF02752 Arrestin_C: Arrestin 90.2 7.8 0.00017 30.5 12.8 40 39-81 15-54 (136)
10 PF07070 Spo0M: SpoOM protein; 81.7 13 0.00029 34.4 9.6 118 39-177 23-145 (218)
11 PF00339 Arrestin_N: Arrestin 53.0 21 0.00046 28.6 4.0 46 236-282 2-48 (149)
12 cd01759 PLAT_PL PLAT/LH2 domai 48.3 1E+02 0.0022 25.7 7.4 70 203-281 28-99 (113)
13 PF01835 A2M_N: MG2 domain; I 41.2 65 0.0014 24.8 4.9 41 150-199 13-55 (99)
14 PF04425 Bul1_N: Bul1 N termin 39.2 82 0.0018 32.3 6.4 64 8-76 132-195 (438)
15 PF02752 Arrestin_C: Arrestin 29.6 2.7E+02 0.0058 21.6 7.4 49 233-282 3-52 (136)
16 PF11197 DUF2835: Protein of u 26.7 2.5E+02 0.0055 21.6 5.9 40 22-61 20-64 (68)
17 PF15417 DUF4624: Domain of un 22.7 3.4E+02 0.0074 23.4 6.4 45 9-55 50-94 (132)
18 PF08737 Rgp1: Rgp1; InterPro 21.8 2.9E+02 0.0063 27.7 6.9 54 226-280 295-349 (415)
No 1
>KOG3063|consensus
Probab=100.00 E-value=5.5e-80 Score=562.83 Aligned_cols=221 Identities=67% Similarity=1.123 Sum_probs=217.6
Q ss_pred CCccc--cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEee
Q psy9998 1 MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYY 78 (288)
Q Consensus 1 ~~~~g--f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~ 78 (288)
|||+| |||+|+|+|.||++++|++|+.+.++|+++++|+|+|||+|+|+|.++++ +|++++||||+++|+||||++|
T Consensus 1 m~~l~~fF~~~~di~i~~~~~e~Rk~v~~k~e~g~~e~~~lf~dgEtv~G~V~l~lk-~gkkleH~GikiefiGqIe~~~ 79 (301)
T KOG3063|consen 1 MNFLGGFFKPSIDIEILFDNEESRKQVDMKTEDGKKEKHPLFYDGETVSGKVNLRLK-DGKKLEHQGIKIEFIGQIEMYY 79 (301)
T ss_pred CchhhcccCCCeeEEEEEcCchhheeccccccCCceeeeeeEecCCeeeeEEEEEEc-CCcccccCceEEEEEEEEEEEe
Confidence 88887 99999999999999999999999999999999999999999999999999 6999999999999999999999
Q ss_pred ccCCeEEEEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEE
Q psy9998 79 DRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRV 158 (288)
Q Consensus 79 d~~~~~ef~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl 158 (288)
|+||.++|.+++++||+||+|.+++++||+|.+++|+||||.|+||+ +|
T Consensus 80 drgn~~eF~~lv~eLa~pGel~~~~~fpFeF~~vekpyEsY~G~NV~------------------------------lr- 128 (301)
T KOG3063|consen 80 DRGNFHEFTSLVRELARPGELTQSQSFPFEFPHVEKPYESYIGKNVR------------------------------LR- 128 (301)
T ss_pred cCCcHHHHHHHHHhhcCCcceeecccCCccccccccchhhhcCcceE------------------------------EE-
Confidence 99999999999999999999999999999999999999999999999 88
Q ss_pred eccCccCCcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEE
Q psy9998 159 FLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIE 238 (288)
Q Consensus 159 ~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhie 238 (288)
|+|++++. ||+ +|++|+.|||||+++++|+.|+|||||||||||||||
T Consensus 129 ---------------------Y~lkvTv~----Rr~-------~di~ke~d~~V~~~~~~P~~nn~IkmeVGIedCLHIE 176 (301)
T KOG3063|consen 129 ---------------------YFLKVTVS----RRL-------TDIVKEKDLVVHNLSTYPEINNSIKMEVGIEDCLHIE 176 (301)
T ss_pred ---------------------EEEEEEEE----ech-------hhhhhhhheeeEecccCCCCCCceeEeechhhceEEE
Confidence 99999999 999 7999999999999999999999999999999999999
Q ss_pred EEeccccceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCcee
Q psy9998 239 FEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLS 286 (288)
Q Consensus 239 f~y~k~~~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~~ 286 (288)
|||||++ |||+|+|+|||||+||||||||||++|+|||++|+|+|+.
T Consensus 177 FEYnKsk-YhLkdvIvGkIYFlLvRikIk~Mel~iikrEstG~gpn~~ 223 (301)
T KOG3063|consen 177 FEYNKSK-YHLKDVIVGKIYFLLVRIKIKHMELSIIKRESTGTGPNTY 223 (301)
T ss_pred EEecccc-cchhheEEeeEEEEEEEEEeeeeEEEEEEeecccCCCcce
Confidence 9999999 9999999999999999999999999999999999999875
No 2
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=100.00 E-value=1.5e-65 Score=477.10 Aligned_cols=215 Identities=58% Similarity=0.943 Sum_probs=178.2
Q ss_pred cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccCCeEE
Q psy9998 6 FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHE 85 (288)
Q Consensus 6 f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~~~~e 85 (288)
||++|+|+|.|||++.|++|+++.++|+++.+|+|++||+|+|+|.|+++ +||+++|+||+++|+|+||++|+++++++
T Consensus 1 f~~~~~i~i~l~~~~~rk~v~~~~~~~~~~~~~iY~~gE~V~G~V~I~~~-~gk~~~H~GI~l~lvG~ie~~~~~~k~~~ 79 (275)
T PF03643_consen 1 FGPPCDIDIELDDEDSRKKVEVKTDDGKKEKNPIYSDGETVSGKVVITSK-PGKSLEHQGIKLELVGQIEAFYDSGKPIE 79 (275)
T ss_dssp TTTTEEEEEEETTCCCS-EEEEE-TTS-EEEEEEEETC--EEEEEEEEES-STS-EEES-EEEEEEEEEEEGCCTT-EEE
T ss_pred CCCceEEEEEECCCcccceEEEECCCCCEEEeceEcCCCEEEEEEEEEEC-CCCceEEeeEEEEEEEeEeEeccCCCceE
Confidence 79999999999999999999999999999999999999999999999999 69999999999999999999999999999
Q ss_pred EEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccC
Q psy9998 86 FVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDL 165 (288)
Q Consensus 86 f~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~l 165 (288)
|++.++||++||+|++.+++||+|..++++||||||++|+ ||
T Consensus 80 f~~~~~eL~~~G~l~~~~t~pFeF~~~~k~yETY~G~~v~------------------------------i~-------- 121 (275)
T PF03643_consen 80 FLSLSIELAPPGKLPEGKTFPFEFPLVEKPYETYHGVNVN------------------------------IR-------- 121 (275)
T ss_dssp EEEEEEEEE-SEEE-S-EEEEEEE-SB---S--EE-SSEE------------------------------EE--------
T ss_pred eEEeeEEEcCCcccCCCcEEeeEeCCCCCCCccEeeeEEE------------------------------EE--------
Confidence 9999999999999998888999999999999999999999 88
Q ss_pred CcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEEEEecccc
Q psy9998 166 APTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCN 245 (288)
Q Consensus 166 tPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhief~y~k~~ 245 (288)
|+|++++. |+| +++++++||||+.+...|+.+.||+|||||||||||||+|+|++
T Consensus 122 --------------Y~lrv~v~----R~~-------~~i~k~~ef~V~~~~~~p~~~~~ik~evgie~~lhief~~~k~~ 176 (275)
T PF03643_consen 122 --------------YFLRVTVK----RSY-------KDISKEQEFWVQNFSITPESNQPIKMEVGIEDCLHIEFEYDKSK 176 (275)
T ss_dssp --------------EEEEEEE------SS-------S-EEEEEEEEEE-EB--------EEEEECETTTEEEEEEES-SE
T ss_pred --------------EEEEEEEE----ccC-------CCcceEEEEEEEeccCCCCCCCCcccccCCCccEEEEEEEcccc
Confidence 99999999 999 79999999999999999999999999999999999999999999
Q ss_pred ceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCce
Q psy9998 246 TWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFL 285 (288)
Q Consensus 246 ~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~ 285 (288)
|||+|+|+|+|||+++|+|||||||||+|+||||+|.+.
T Consensus 177 -~~l~d~i~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~ 215 (275)
T PF03643_consen 177 -YHLKDVITGKIYFLLVRIKIKSMELQLIRVETCGCGENY 215 (275)
T ss_dssp -EETT-EEEEEEEEEEESS-EEEEEEEEEEEEEECECCCE
T ss_pred -eECCCCEEEEEEEEEEeecceEEEEEEEEEEEEecCCcc
Confidence 999999999999999999999999999999999999765
No 3
>KOG3063|consensus
Probab=100.00 E-value=1.2e-43 Score=324.60 Aligned_cols=195 Identities=47% Similarity=0.692 Sum_probs=177.9
Q ss_pred CCceEEEEEeCCCCCceeEEEecCCCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEEE
Q psy9998 7 GQSADIEIKLDGTDTRKLADIKSDDGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIGQ 73 (288)
Q Consensus 7 ~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG~ 73 (288)
|+..+.+++-|||...++|.++.++||+.+|. +|+|.+++..++.+ ++..||...+.|...++|..
T Consensus 34 g~~e~~~lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGqIe~~~drgn~~eF~~lv~eLa~pGel~~~~~fpFeF~~- 112 (301)
T KOG3063|consen 34 GKKEKHPLFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQIEMYYDRGNFHEFTSLVRELARPGELTQSQSFPFEFPH- 112 (301)
T ss_pred CceeeeeeEecCCeeeeEEEEEEcCCcccccCceEEEEEEEEEEEecCCcHHHHHHHHHhhcCCcceeecccCCccccc-
Confidence 56778899999999999999999999998887 99999999999988 78889999999999999997
Q ss_pred EEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEE-----eccCccccc--ccccccc
Q psy9998 74 IELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEF-----LNVEKPYES--YTGSNVF 125 (288)
Q Consensus 74 Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF-----~~vek~yES--Y~G~~Vr 125 (288)
+++.|+++.+ .+...|+..++..++++. ++++|. +|+|++|.+ ||.++|-
T Consensus 113 vekpyEsY~G~NV~lrY~lkvTv~Rr~~di~ke~d~~V~~~~~~P~~nn--~IkmeVGIedCLHIEFEYnKskYhLkdvI 190 (301)
T KOG3063|consen 113 VEKPYESYIGKNVRLRYFLKVTVSRRLTDIVKEKDLVVHNLSTYPEINN--SIKMEVGIEDCLHIEFEYNKSKYHLKDVI 190 (301)
T ss_pred cccchhhhcCcceEEEEEEEEEEEechhhhhhhhheeeEecccCCCCCC--ceeEeechhhceEEEEEecccccchhheE
Confidence 9999998876 456678888888888877 899999 699999976 9999953
Q ss_pred --------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEe
Q psy9998 126 --------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVK 179 (288)
Q Consensus 126 --------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~ 179 (288)
+.||+++.|++|+++||||||||+|||+|||||||+|++||||+++++|+|||+
T Consensus 191 vGkIYFlLvRikIk~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGapvrGEsIPiRlFLagYdlTPtmrdinkkFsVk 270 (301)
T KOG3063|consen 191 VGKIYFLLVRIKIKHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTMRDINKKFSVK 270 (301)
T ss_pred EeeEEEEEEEEEeeeeEEEEEEeecccCCCcceeccceeeeEEeccCCCcCCCeeeeEEEecccCCCcchhhhcceeeee
Confidence 148999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCCceeeeeeeeccCc
Q psy9998 180 YFLNLVLMDEEDRRYFKQQVFTPNL 204 (288)
Q Consensus 180 Y~l~lvl~de~~rryfk~~ei~~~~ 204 (288)
|||+|||+|||||||||||||+.-.
T Consensus 271 yyLnLVlvDeedRRYFKQqEItLwR 295 (301)
T KOG3063|consen 271 YYLNLVLVDEEDRRYFKQQEITLWR 295 (301)
T ss_pred eEEEEEEEchhhhhhhhheeEEEEE
Confidence 9999999999999999999998543
No 4
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=99.96 E-value=3e-29 Score=233.95 Aligned_cols=182 Identities=36% Similarity=0.479 Sum_probs=123.5
Q ss_pred CCceEEEEEeCCCCCceeEEEecCCCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEEE
Q psy9998 7 GQSADIEIKLDGTDTRKLADIKSDDGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIGQ 73 (288)
Q Consensus 7 ~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG~ 73 (288)
|.....+|+.+||...++|.++.++||+.+|. .++++.+....+.. ++.+||+..+-+.+.++|..
T Consensus 27 ~~~~~~~iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~ie~~~~~~k~~~f~~~~~eL~~~G~l~~~~t~pFeF~~- 105 (275)
T PF03643_consen 27 GKKEKNPIYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQIEAFYDSGKPIEFLSLSIELAPPGKLPEGKTFPFEFPL- 105 (275)
T ss_dssp S-EEEEEEEETC--EEEEEEEEESSTS-EEES-EEEEEEEEEEEGCCTT-EEEEEEEEEEEE-SEEE-S-EEEEEEE-S-
T ss_pred CCEEEeceEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEeEeEeccCCCceEeEEeeEEEcCCcccCCCcEEeeEeCC-
Confidence 34567899999999999999999999998887 56677766667655 78779988888889999986
Q ss_pred EEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEE-----eccCccccc--ccccccc
Q psy9998 74 IELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEF-----LNVEKPYES--YTGSNVF 125 (288)
Q Consensus 74 Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF-----~~vek~yES--Y~G~~Vr 125 (288)
++..|+++++ .+.-.|+..+...++.. .+++++. .++++.|.+ ||..++=
T Consensus 106 ~~k~yETY~G~~v~i~Y~lrv~v~R~~~~i~k~~ef~V~~~~~~p~~~--~~ik~evgie~~lhief~~~k~~~~l~d~i 183 (275)
T PF03643_consen 106 VEKPYETYHGVNVNIRYFLRVTVKRSYKDISKEQEFWVQNFSITPESN--QPIKMEVGIEDCLHIEFEYDKSKYHLKDVI 183 (275)
T ss_dssp B---S--EE-SSEEEEEEEEEEE--SSS-EEEEEEEEEE-EB----------EEEEECETTTEEEEEEES-SEEETT-EE
T ss_pred CCCCCccEeeeEEEEEEEEEEEEEccCCCcceEEEEEEEeccCCCCCC--CCcccccCCCccEEEEEEEcccceECCCCE
Confidence 7777887776 45556666666555444 3688888 477888865 8887731
Q ss_pred --------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEe
Q psy9998 126 --------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVK 179 (288)
Q Consensus 126 --------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~ 179 (288)
+.+++..+|+++|++||||||+|||||+|||||||++++||||+++++|+|||+
T Consensus 184 ~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~~~e~t~i~~~eImDG~p~rge~IPirl~l~~l~l~Pt~~~~~~~FsV~ 263 (275)
T PF03643_consen 184 TGKIYFLLVRIKIKSMELQLIRVETCGCGENYAKESTEIQKIEIMDGAPCRGESIPIRLFLPRLFLCPTYKNVNNKFSVE 263 (275)
T ss_dssp EEEEEEEEESS-EEEEEEEEEEEEEECECCCEEEEEEEEEEEEEESS---TT-EEEEEEECCCT-----EEEECTTEEEE
T ss_pred EEEEEEEEEeecceEEEEEEEEEEEEecCCcccccceEEEEEEeecCCccccceeeEEEEcCCcccCCcchhcCCcEEEE
Confidence 126788999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCC
Q psy9998 180 YFLNLVLMDEED 191 (288)
Q Consensus 180 Y~l~lvl~de~~ 191 (288)
|+|||+|+||||
T Consensus 264 y~lnlvlide~d 275 (275)
T PF03643_consen 264 YELNLVLIDEDD 275 (275)
T ss_dssp EEEEEEEEETT-
T ss_pred EEEEEEEEcCCC
Confidence 999999999997
No 5
>KOG2717|consensus
Probab=99.96 E-value=2.9e-28 Score=223.62 Aligned_cols=181 Identities=25% Similarity=0.406 Sum_probs=156.5
Q ss_pred EEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEe------------eccCCeEEEEEEEEEeeCCCccC-cCcee
Q psy9998 39 LYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELY------------YDRGNHHEFVSLVKELARPGELI-QNTTY 105 (288)
Q Consensus 39 iy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~------------~d~~~~~ef~~~~~eL~~pG~l~-~~~~i 105 (288)
+|..+|.+.|+|.|.++ .+++||||++.+.|++++| |++-++++.+..+.|+..||+++ +.++|
T Consensus 15 iy~s~e~l~G~vvi~sa---~s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK~p~G~tEi 91 (313)
T KOG2717|consen 15 IYRSSEPLEGKVVIKSA---TSISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGKIPPGTTEI 91 (313)
T ss_pred eeecCCccceeEEEEec---cccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCCCCCCceee
Confidence 89999999999999988 7899999999999999885 66777799999999999999998 99999
Q ss_pred eEEEec-----cCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEeE
Q psy9998 106 KFEFLN-----VEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKY 180 (288)
Q Consensus 106 ~FeF~~-----vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y 180 (288)
||||+. -++.||+|||++++ |+ |
T Consensus 92 pFelpL~~kge~~~lYETyHGvfiN------------------------------iq----------------------Y 119 (313)
T KOG2717|consen 92 PFELPLREKGEGEKLYETYHGVFIN------------------------------IQ----------------------Y 119 (313)
T ss_pred eeeeeeccCCCccEeeeeecceEEE------------------------------EE----------------------E
Confidence 999963 35699999999999 88 9
Q ss_pred EEEEEEEecCCceeeeeeeeccCcceeeeEEEecccc-CCCC-CCCceeeeCCccE------------EEEEEEeccccc
Q psy9998 181 FLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSS-YPEM-NSPIKMEVGIEDC------------LHIEFEYNKCNT 246 (288)
Q Consensus 181 ~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~-~p~~-~~~i~mevgie~~------------lhief~y~k~~~ 246 (288)
-|.+.+. |.| +.|+++|.+||+||+... .|+. +..+-+-+..+.. +.+.+.+|.+.
T Consensus 120 ~Ltcdik----R~~-----L~K~ltkt~eFiv~s~pv~l~e~~p~iV~F~itpdtlq~~~ker~~~p~FlvtG~Ld~t~- 189 (313)
T KOG2717|consen 120 LLTCDIK----RGY-----LHKPLTKTMEFIVESGPVDLPERPPEIVIFYITPDTLQHPLKERIKTPGFLVTGKLDATQ- 189 (313)
T ss_pred EEEEecc----cch-----hcCchhhhheeeeccCCcccccCCCcceEEEEChHHhhccchhhccCCceEEEeeeccee-
Confidence 9999999 999 689999999999998742 3332 2223333333322 45899999999
Q ss_pred eeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCc
Q psy9998 247 WNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIF 284 (288)
Q Consensus 247 ~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~ 284 (288)
|+|+|++.|.+........|+++|+|++|+||||||..
T Consensus 190 c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Eg 227 (313)
T KOG2717|consen 190 CSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEG 227 (313)
T ss_pred eEecCCccceEEEEeeccceeEEEEEEEEEEEeecccc
Confidence 99999999999999999999999999999999999954
No 6
>KOG2717|consensus
Probab=98.16 E-value=3.6e-06 Score=78.69 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=54.2
Q ss_pred cccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCC
Q psy9998 130 NVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEED 191 (288)
Q Consensus 130 ~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~ 191 (288)
...+|...||+.||+||+.||+.++||.+.|+++.+|||. ..+.|+|+|.+|+++...+|
T Consensus 227 gy~~dateIQsiQIADGdVcr~l~lPIymvlPRLftCPtl--~t~nFkvEFevni~v~fk~d 286 (313)
T KOG2717|consen 227 GYVTDATEIQSIQIADGDVCRNLTLPIYMVLPRLFTCPTL--FTGNFKVEFEVNITVSFKSD 286 (313)
T ss_pred ceecccceeeeEEeccCccccCCceeEEEEechhhcCCce--eccccEEEEEEEEEEEEccc
Confidence 3456788999999999999999999999999999999999 78889999999999995444
No 7
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=97.65 E-value=0.0001 Score=59.95 Aligned_cols=40 Identities=23% Similarity=0.494 Sum_probs=31.8
Q ss_pred EEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeec
Q psy9998 37 FYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYD 79 (288)
Q Consensus 37 ~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d 79 (288)
.++|+.||.|+|.|.+.+. +.+.=++|++.|.|.......
T Consensus 9 ~~~y~~Ge~I~G~V~l~~~---~~~~i~~i~v~l~G~~~~~~~ 48 (149)
T PF00339_consen 9 KPVYFPGEVISGKVVLELS---KPIKIKSIKVRLKGRAKTKWS 48 (149)
T ss_dssp EEEEESS--EEEEEEECTT---T-TTTSEEEEEEEEEEEESSS
T ss_pred CCEECCCCEEEEEEEEEEC---CccceeEEEEEEEEEEEEEec
Confidence 5699999999999999877 667779999999998877554
No 8
>KOG3780|consensus
Probab=97.52 E-value=0.034 Score=53.70 Aligned_cols=203 Identities=19% Similarity=0.287 Sum_probs=109.4
Q ss_pred EEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccCCeEEEEEEEEEeeCCCccCcCceeeEE----Eecc-
Q psy9998 38 YLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFE----FLNV- 112 (288)
Q Consensus 38 piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~~~~ef~~~~~eL~~pG~l~~~~~i~Fe----F~~v- 112 (288)
.+|..|+.++|.|.++.+ +...=++|++++.|.............-. .....+... ..+..|. +.+.
T Consensus 16 ~iy~~G~~vsG~v~l~~~---~~~~~~~i~l~~~G~~~t~w~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~y~~~~ 87 (427)
T KOG3780|consen 16 AIYFPGEPVSGSVVLSTK---EPIKVRAIKLQLKGRARTSWSESERGTKL----NSKSEGSIK-SSTVNYTAKETYLDSK 87 (427)
T ss_pred cccCCCCeEEEEEEEEeC---CccceeEEEEEEEEeEEEeeccccccccc----ccccccccc-cceEEeeceEEEeeee
Confidence 699999999999999888 77888999999999876643221110000 000000000 0001110 0000
Q ss_pred CcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCCc
Q psy9998 113 EKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDR 192 (288)
Q Consensus 113 ek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~r 192 (288)
...+.+..|.+-+. + |--.-..|+++-|+.- +-||+....+ .|+|++++.|- |
T Consensus 88 ~~~~~~~~g~~~~~-----l---------------~~G~~~~pF~~~LP~~-~P~Sfeg~~G--~irY~vk~~id----r 140 (427)
T KOG3780|consen 88 TILWTSSNGSNSRV-----L---------------PPGNYEFPFSFTLPLN-LPPSFEGKFG--HVRYFVKAEID----R 140 (427)
T ss_pred eEEeeccCCCCcee-----c---------------CCCceEEeEeccCCCC-CCCceeeCCc--eEEEEEEEEEe----c
Confidence 00111222222200 0 0011133566555555 6666666555 56799999987 6
Q ss_pred eeeeeeeeccCcceeeeEEEecc---ccCCCCCCCceee----eC----CccEEEEEEEeccccceeecceEEeEEEEEE
Q psy9998 193 RYFKQQVFTPNLIKELDIIVHTL---SSYPEMNSPIKME----VG----IEDCLHIEFEYNKCNTWNLKDVIVGKIYFLL 261 (288)
Q Consensus 193 ryfk~~ei~~~~~k~~ef~v~~~---~~~p~~~~~i~me----vg----ie~~lhief~y~k~~~~~l~d~i~G~i~f~l 261 (288)
.+ ..+......|.|... ...|....++... ++ -.-.+.++....++. |-..+.+...+.+.-
T Consensus 141 ~~------~~~~~~~~~~~V~~~~~ln~~p~~~~~~~~~~~k~~~~~~~~~g~v~~~~~ip~~~-~~~ge~i~~~~~i~n 213 (427)
T KOG3780|consen 141 PW------KLNKKNRKPFTVIETVDLNSSPSLLEPIISKASKKLGCVCFSSGPVSLELTIPKTG-YVPGETIPVTLEIEN 213 (427)
T ss_pred CC------CCCccceeeEEEecccccccCccccCcchhhhhheeeEEEecCCcEEEEEEccccc-CcCCccEEEEEEEec
Confidence 44 335555555554332 1223322222211 11 122245667778877 877777777777666
Q ss_pred e-ecceeEEEEEEEEEEeeccC
Q psy9998 262 V-RIKIKHMEIAIIKRETTGTG 282 (288)
Q Consensus 262 ~-~~~ik~mei~i~r~Et~g~~ 282 (288)
. ...++.+++.++++.+....
T Consensus 214 ~ss~~~~~~~~~l~q~~~~~~~ 235 (427)
T KOG3780|consen 214 KSSRTIKKVKAKLIQKISYLAF 235 (427)
T ss_pred CCCCcceeeEEEEEEEEEEEee
Confidence 5 88899999999998866544
No 9
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=90.20 E-value=7.8 Score=30.53 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=28.7
Q ss_pred EEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccC
Q psy9998 39 LYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRG 81 (288)
Q Consensus 39 iy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~ 81 (288)
.|..||.+.-.+.|+-. ++..-++|+++|.-.+......+
T Consensus 15 ~~~~Ge~i~v~v~i~n~---s~~~i~~I~v~L~~~~~~~~~~~ 54 (136)
T PF02752_consen 15 AYVPGETIPVNVEIDNQ---SKKKIKKIKVSLVERITYKAKGG 54 (136)
T ss_dssp EEETT--EEEEEEEEE----SSSEEEEEEEEEEEEEEE-SS--
T ss_pred EECCCCEEEEEEEEEEC---CCCEEEEEEEEEEEEEEEEEeec
Confidence 79999999999999843 56788899999999887554443
No 10
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=81.74 E-value=13 Score=34.39 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=70.5
Q ss_pred EEecCCceeeEEEEEECCCC-ceeeEecEEEEEEEEEEEeeccCC-eEEEEEEEEEeeCCCccC--cCceeeEEEec-cC
Q psy9998 39 LYYDGESVTGQVNIVLKKHG-SKLEHQGIKIEFIGQIELYYDRGN-HHEFVSLVKELARPGELI--QNTTYKFEFLN-VE 113 (288)
Q Consensus 39 iy~dge~V~G~V~I~~~~~G-k~leH~GI~veliG~Ie~~~d~~~-~~ef~~~~~eL~~pG~l~--~~~~i~FeF~~-ve 113 (288)
-|.+||.++|.|.|+ .| ...+=++|.+.|.-.++.-.+... ..+.......++.+-++. ...++||+|.- -+
T Consensus 23 ~~~pGe~v~G~V~i~---GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP~e 99 (218)
T PF07070_consen 23 SVRPGETVRGEVHIK---GGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLPWE 99 (218)
T ss_pred CccCCCEEEEEEEEE---eCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECCCC
Confidence 578899999999996 33 445667899999887776444332 233334445666666665 66779999961 22
Q ss_pred cccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhcccee
Q psy9998 114 KPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFS 177 (288)
Q Consensus 114 k~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fs 177 (288)
-+-.. .|..+- +.+-=-++++.=.++.=||+ +.-.|.+..+-..|+
T Consensus 100 tPiT~-~~~~v~------------l~T~LdI~~avD~~D~D~i~-----V~P~p~~~~vl~A~~ 145 (218)
T PF07070_consen 100 TPITE-GGMRVW------------LRTGLDIAGAVDPGDLDPIE-----VEPLPAQQAVLDALE 145 (218)
T ss_pred CCccC-CCcEEE------------EEEEEEeCCCCCCCCceeEE-----EeCCHHHHHHHHHHH
Confidence 22111 233322 22222456666667777777 445566665554443
No 11
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=53.01 E-value=21 Score=28.62 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=34.3
Q ss_pred EEEEEeccccceeecceEEeEEEEEEee-cceeEEEEEEEEEEeeccC
Q psy9998 236 HIEFEYNKCNTWNLKDVIVGKIYFLLVR-IKIKHMEIAIIKRETTGTG 282 (288)
Q Consensus 236 hief~y~k~~~~~l~d~i~G~i~f~l~~-~~ik~mei~i~r~Et~g~~ 282 (288)
+|+|.=++.. |.-.|+|.|+|...+.+ ++++++.+.+.=++.+...
T Consensus 2 ~I~ld~~~~~-y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~ 48 (149)
T PF00339_consen 2 EIELDNPKPV-YFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWS 48 (149)
T ss_dssp EEEES-SEEE-EESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSS
T ss_pred EEEECCCCCE-ECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEec
Confidence 4555534666 99999999999998776 8999999999988866544
No 12
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=48.34 E-value=1e+02 Score=25.71 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=42.5
Q ss_pred CcceeeeEEEeccccCCCCC--CCceeeeCCccEEEEEEEeccccceeecceEEeEEEEEEeecceeEEEEEEEEEEeec
Q psy9998 203 NLIKELDIIVHTLSSYPEMN--SPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTG 280 (288)
Q Consensus 203 ~~~k~~ef~v~~~~~~p~~~--~~i~mevgie~~lhief~y~k~~~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g 280 (288)
.-+++.+|..-.+ .|..+ .-|..|+.+-|.+-+.|+++++. ++..-+ .+-+.+|.|+.+|=+= |-=.|+
T Consensus 28 g~s~~~~i~~g~l--~pg~tys~li~~d~dvG~l~~Vkf~W~~~~-~n~~~p-----~~~~~~I~Vq~Ge~~~-~~~FC~ 98 (113)
T cd01759 28 GNTRQYEIFKGTL--KPGNTYSAFIDVDVDVGPLTKVKFIWNNNV-INITLP-----KVGAEKITVQSGKDGK-VFNFCS 98 (113)
T ss_pred CCccceEEEeeee--cCCCEEEEEEEccCCCCCEEEEEEEEeCCc-cCCCCC-----eEEEEEEEEEeCCCcc-EEEECC
Confidence 4556666653222 34432 45667888999999999999886 764222 2225666677776553 333444
Q ss_pred c
Q psy9998 281 T 281 (288)
Q Consensus 281 ~ 281 (288)
.
T Consensus 99 ~ 99 (113)
T cd01759 99 S 99 (113)
T ss_pred C
Confidence 3
No 13
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=41.21 E-value=65 Score=24.76 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCceeeEEEeccCcc--CCcchhhhccceeEeEEEEEEEEecCCceeeeeee
Q psy9998 150 RGESIPIRVFLAGYD--LAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQV 199 (288)
Q Consensus 150 ~ge~IPiRl~L~~~~--ltPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~e 199 (288)
-||+|.+|.++...+ +.|... .-+.+.|.|.+|+..++...
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~---------~~~~v~i~dp~g~~v~~~~~ 55 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPAN---------SPVTVTIKDPSGNEVFRWSV 55 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESS---------EEEEEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEEEEeccccccccccC---------CceEEEEECCCCCEEEEEEe
Confidence 588889999988877 333332 77889999999999876555
No 14
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=39.20 E-value=82 Score=32.29 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=45.1
Q ss_pred CceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEE
Q psy9998 8 QSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIEL 76 (288)
Q Consensus 8 ~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~ 76 (288)
++.+|+|++-..-...-+.-..+.-.+ =|..||-|.|.|.|+=+ ..+.+.-.=+.|.|.|.+-.
T Consensus 132 ~~l~I~I~~Tk~v~~~g~p~~id~~l~----Ey~qGD~I~GyvtI~N~-S~~pIpFdMFyV~lEG~~~v 195 (438)
T PF04425_consen 132 SPLEIEIYVTKDVGKPGKPPEIDPSLK----EYTQGDIIHGYVTIENT-SSKPIPFDMFYVSLEGTISV 195 (438)
T ss_pred CceEEEEEEeccCCCCCCCcccCcccc----cccCCCEEEEEEEEEEC-CCCCcccceEEEEEEEEEEE
Confidence 478888888765443332211111122 48999999999999755 56888888999999998864
No 15
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=29.61 E-value=2.7e+02 Score=21.61 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=36.1
Q ss_pred cEEEEEEEeccccceeecceEEeEEEEEE-eecceeEEEEEEEEEEeeccC
Q psy9998 233 DCLHIEFEYNKCNTWNLKDVIVGKIYFLL-VRIKIKHMEIAIIKRETTGTG 282 (288)
Q Consensus 233 ~~lhief~y~k~~~~~l~d~i~G~i~f~l-~~~~ik~mei~i~r~Et~g~~ 282 (288)
+-+|++...+++. |...|.+--.+.+.. ...+|+.+++.|+|+-+.-..
T Consensus 3 g~i~~~~~i~~~~-~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~ 52 (136)
T PF02752_consen 3 GKISLSISIPRTA-YVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAK 52 (136)
T ss_dssp EEEEEEEEES-SE-EETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS
T ss_pred CEEEEEEEECCCE-ECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEe
Confidence 4578889999988 999998877766654 456899999999999877554
No 16
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=26.68 E-value=2.5e+02 Score=21.58 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=31.2
Q ss_pred ceeEEEecCCCcEEEEE-----EEecCCceeeEEEEEECCCCcee
Q psy9998 22 RKLADIKSDDGKKERFY-----LYYDGESVTGQVNIVLKKHGSKL 61 (288)
Q Consensus 22 r~~v~~k~~~gk~~~~p-----iy~dge~V~G~V~I~~~~~Gk~l 61 (288)
-+.|.+...+|++..+| =|-..+-|.|...+++.+.||-+
T Consensus 20 a~~V~v~s~~Gr~v~~Pa~~lRpFvt~~Gv~G~F~l~~d~~~kf~ 64 (68)
T PF11197_consen 20 ASKVVVRSDDGRRVQFPARHLRPFVTHDGVHGRFRLEFDDNNKFV 64 (68)
T ss_pred ccEEEEEecCCcEEEEeHHHCcceecCCCceEEEEEEECCCCCEE
Confidence 45678888999999999 46666788888888888677643
No 17
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=22.68 E-value=3.4e+02 Score=23.40 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEEC
Q psy9998 9 SADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLK 55 (288)
Q Consensus 9 ~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~ 55 (288)
.+++.+.+||+ ++.|++|..+-+-.--.--++|..-...+.|.++
T Consensus 50 ~aEv~f~mDGe--~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~ 94 (132)
T PF15417_consen 50 DAEVYFQMDGE--SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLN 94 (132)
T ss_pred eeEEEEEEcCc--cceEEeccCCccceeeccccccccccceEEEEhh
Confidence 36788999998 6788888654322211112233333445666544
No 18
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=21.77 E-value=2.9e+02 Score=27.73 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=44.6
Q ss_pred eeeeCCccEEEEEEEeccccceeecceEEeEEEEEEee-cceeEEEEEEEEEEeec
Q psy9998 226 KMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVR-IKIKHMEIAIIKRETTG 280 (288)
Q Consensus 226 ~mevgie~~lhief~y~k~~~~~l~d~i~G~i~f~l~~-~~ik~mei~i~r~Et~g 280 (288)
..++-..+-.-..|-+.|.. |+|-|.|.|.+-|-.+. +++-.+-..|-..|++-
T Consensus 295 ~y~I~~n~~~va~~~LsK~~-yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~ 349 (415)
T PF08737_consen 295 SYNIRRNGQRVARLSLSKPA-YRLGEDIVGTIDFNDASTIPCYQVSASLESEETVN 349 (415)
T ss_pred EEEEEECCeEEEEEEecCCC-cccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeC
Confidence 34444445455678889999 99999999999999999 99999999999999864
Done!