Query psy9998
Match_columns 288
No_of_seqs 153 out of 333
Neff 4.4
Searched_HMMs 29240
Date Sat Aug 17 01:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fau_A Vacuolar protein sortin 100.0 7.6E-59 2.6E-63 441.7 29.1 221 1-285 3-225 (341)
2 2r51_A Vacuolar protein sortin 100.0 3.1E-54 1E-58 409.9 29.4 216 6-285 10-225 (340)
3 2fau_A Vacuolar protein sortin 99.9 1E-26 3.5E-31 221.2 14.6 197 7-206 36-300 (341)
4 2r51_A Vacuolar protein sortin 99.9 2.1E-24 7.2E-29 205.2 15.9 197 7-206 36-300 (340)
5 1g4m_A Beta-arrestin1; sensory 94.9 1.6 5.5E-05 41.8 17.7 43 234-277 196-239 (393)
6 1suj_A CONE arrestin; sensory 70.6 78 0.0027 30.4 18.6 42 234-278 193-237 (392)
7 2le2_A P56; UDG inhibition, DN 37.8 26 0.00089 24.8 3.0 26 172-197 2-27 (56)
8 3ugu_A S-arrestin; arrestin fo 29.6 3.9E+02 0.013 25.7 19.4 46 232-278 210-256 (380)
9 1nep_A EPV20, BNPC2, epididyma 13.5 3.1E+02 0.011 21.4 5.4 40 146-194 79-119 (130)
10 2p9r_A Alpha-2-M, alpha-2-macr 12.9 3.3E+02 0.011 19.9 5.1 42 149-199 14-55 (102)
No 1
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-59 Score=441.73 Aligned_cols=221 Identities=63% Similarity=1.094 Sum_probs=209.9
Q ss_pred CCccc--cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEee
Q psy9998 1 MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYY 78 (288)
Q Consensus 1 ~~~~g--f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~ 78 (288)
||||| ||++|+|+|.|||+++|++++++.++|+++++|+|++||+|+|+|.|+++++||+++|+||+|+++|+++++|
T Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~ 82 (341)
T 2fau_A 3 MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFN 82 (341)
T ss_dssp -----CTTTTTEEEEEEETTGGGSCEEEEECTTSCEEEEEEECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECS
T ss_pred cchhhhhcCCCceEEEEECCCCccceEEeecCCCceeccCcCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEe
Confidence 89999 9999999999999999999999999999999999999999999999999878999999999999999999999
Q ss_pred ccCCeEEEEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEE
Q psy9998 79 DRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRV 158 (288)
Q Consensus 79 d~~~~~ef~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl 158 (288)
++++.++|++.+.+|++||+|+..++|||+|.+++++||||+|.+++ ||
T Consensus 83 ~~~~~~~fls~~~eL~~~G~L~~g~~fpF~F~~~~~~~eSy~G~~~~------------------------------Ir- 131 (341)
T 2fau_A 83 DKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVR------------------------------LR- 131 (341)
T ss_dssp TTCCEEEEEEEEEEEECSEEECSCEEEEEEECSCCCCSCCEECSSEE------------------------------EE-
T ss_pred cCCCcEEEEEEEEEEcCCCccCCCcEEeeEeCCCCCCCcceEeeEEE------------------------------EE-
Confidence 99999999999999999999995599999999999999999999999 88
Q ss_pred eccCccCCcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEE
Q psy9998 159 FLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIE 238 (288)
Q Consensus 159 ~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhie 238 (288)
|+|+++|. |+| +|++++.||||+.+++.|+.+.||+||||+|||||||
T Consensus 132 ---------------------Y~vrv~i~----R~~-------~di~~~~eF~V~~~~~~p~~~~pi~~evgied~L~ie 179 (341)
T 2fau_A 132 ---------------------YFLKVTIV----RRL-------TDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDXLHIE 179 (341)
T ss_dssp ---------------------EEEEEEEC----CSS-------SCEEEEEEEEECCCBCCCCCCCCEEEEEEETTTEEEE
T ss_pred ---------------------EEEEEEEE----ecC-------cceeEEEEEEEEeCCCCCCCCCCeEEEEeccccEEEE
Confidence 99999999 999 4999999999999988899999999999999999999
Q ss_pred EEeccccceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCce
Q psy9998 239 FEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFL 285 (288)
Q Consensus 239 f~y~k~~~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~ 285 (288)
|+|+|+. |||+|+|+|+|+|++++++||+||++|+|+||+||+.+.
T Consensus 180 F~~~ks~-y~l~d~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~ 225 (341)
T 2fau_A 180 FEYNKSK-YHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPST 225 (341)
T ss_dssp EEESCSE-EETTCEEEEEEEEEEECSCEEEEEEEEEEEEEESCGGGC
T ss_pred EEEcccc-ccCCCeEEEEEEEEEeccceEEEEEEEEEEEEEcCCCCe
Confidence 9999999 999999999999999999999999999999999998753
No 2
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=100.00 E-value=3.1e-54 Score=409.90 Aligned_cols=216 Identities=69% Similarity=1.158 Sum_probs=206.6
Q ss_pred cCCceEEEEEeCCCCCceeEEEecCCCcEEEEEEEecCCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccCCeEE
Q psy9998 6 FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHE 85 (288)
Q Consensus 6 f~~~~~i~I~ld~e~~r~~v~~k~~~gk~~~~piy~dge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~~~~e 85 (288)
.|++|+|+|.|||+++|+++++++++|+++++|+|++||+|+|+|.|+++++|++++|+||+|++.|+++++|++++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~~~~~~ 89 (340)
T 2r51_A 10 MGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRGNHHE 89 (340)
T ss_dssp ---CEEEEEEETTTTTSCEEEEECTTSCEEEEEEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGTTCCEE
T ss_pred cCCCceEEEEECCCCccceEEeecCCCcEeecCcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecCCCcEE
Confidence 58999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEEEEEeeCCCccCcCceeeEEEeccCcccccccccccccCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccC
Q psy9998 86 FVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDL 165 (288)
Q Consensus 86 f~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~G~~Vr~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~l 165 (288)
|++++++|++||+|+..++|||+|..++++||||+|.+++ ||
T Consensus 90 f~~~~~eL~~pG~L~~G~~fpF~F~lp~~l~eSy~G~~g~------------------------------Ir-------- 131 (340)
T 2r51_A 90 FVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVK------------------------------LR-------- 131 (340)
T ss_dssp EEEEEEEEECSEEECSCEEEEEEECSBCCCSCCEECSSEE------------------------------EE--------
T ss_pred EEEEEEEecCCCccCCCcEEeeEeCCCCCCCcCeEeeeEE------------------------------EE--------
Confidence 9999999999999996666999999999999999999999 88
Q ss_pred CcchhhhccceeEeEEEEEEEEecCCceeeeeeeeccCcceeeeEEEeccccCCCCCCCceeeeCCccEEEEEEEecccc
Q psy9998 166 APTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCN 245 (288)
Q Consensus 166 tPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ei~~~~~k~~ef~v~~~~~~p~~~~~i~mevgie~~lhief~y~k~~ 245 (288)
|+|+++|. |++ +|++++.||||+.+.++|+++.||+||+|++|||||+|+|+|+.
T Consensus 132 --------------Y~vkv~i~----Rp~-------~di~~~~eF~V~~~~~~p~~~~pIk~Evgi~~cl~Ie~~~~ks~ 186 (340)
T 2r51_A 132 --------------YFLRATIS----RRL-------NDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSK 186 (340)
T ss_dssp --------------EEEEEEEC----CSS-------CCEEEEEEEEEECCCCCCCCCCCEEEEEEETTTEEEEEEESCSE
T ss_pred --------------EEEEEEEE----ecC-------CCceEEEEEEEEeCCCCCccCCCEeccccCCceEEEEEEECccc
Confidence 99999999 998 39999999999999889999999999999999999999999999
Q ss_pred ceeecceEEeEEEEEEeecceeEEEEEEEEEEeeccCCce
Q psy9998 246 TWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFL 285 (288)
Q Consensus 246 ~~~l~d~i~G~i~f~l~~~~ik~mei~i~r~Et~g~~~~~ 285 (288)
||++|+|+|+|+|++++++||+||++|+|+||+|++.+.
T Consensus 187 -y~lgd~I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~ 225 (340)
T 2r51_A 187 -YHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNV 225 (340)
T ss_dssp -EETTCEEEEEEEEEEECSCEEEEEEEEEEEEEEEETTEE
T ss_pred -ccCCCeEEEEEEEEEeeceeEEEEEEEEEEEEEecCCCe
Confidence 999999999999999999999999999999999999764
No 3
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=221.21 Aligned_cols=197 Identities=42% Similarity=0.618 Sum_probs=137.2
Q ss_pred CCceEEEEEeCCCCCceeEEEecC-CCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEE
Q psy9998 7 GQSADIEIKLDGTDTRKLADIKSD-DGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIG 72 (288)
Q Consensus 7 ~~~~~i~I~ld~e~~r~~v~~k~~-~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG 72 (288)
|......++.+||...++|.++.+ +||+.+|. ++++.....-.+.. ++.+||+.-+-.-+.++|..
T Consensus 36 ~~~~~~~vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~~~~~~~~fls~~~eL~~~G~L~~g~~fpF~F~~ 115 (341)
T 2fau_A 36 GKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQ 115 (341)
T ss_dssp SCEEEEEEECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECSTTCCEEEEEEEEEEEECSEEECSCEEEEEEECS
T ss_pred CceeccCcCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCccCCCcEEeeEeCC
Confidence 456788999999999999999987 67766554 45565555444443 45556754333346777764
Q ss_pred EEEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEEe-----ccCccccc--cccccc
Q psy9998 73 QIELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEFL-----NVEKPYES--YTGSNV 124 (288)
Q Consensus 73 ~Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF~-----~vek~yES--Y~G~~V 124 (288)
++..|+++.+ .+...+|..+..+...+. +++|+.. +++++|.+ |+..++
T Consensus 116 -~~~~~eSy~G~~~~IrY~vrv~i~R~~~di~~~~eF~V~~~~~~p~~~~--pi~~evgied~L~ieF~~~ks~y~l~d~ 192 (341)
T 2fau_A 116 -VEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNN--SIKMEVGIEDXLHIEFEYNKSKYHLKDV 192 (341)
T ss_dssp -CCCCSCCEECSSEEEEEEEEEEECCSSSCEEEEEEEEECCCBCCCCCCC--CEEEEEEETTTEEEEEEESCSEEETTCE
T ss_pred -CCCCCcceEeeEEEEEEEEEEEEEecCcceeEEEEEEEEeCCCCCCCCC--CeEEEEeccccEEEEEEEccccccCCCe
Confidence 3434443333 344555565555444433 5777763 45556654 655552
Q ss_pred c--------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeE
Q psy9998 125 F--------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSV 178 (288)
Q Consensus 125 r--------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv 178 (288)
= +.+++..+|++++++||||||+|+||++|||||+|++++||||++|++++|||
T Consensus 193 I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImDG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV 272 (341)
T 2fau_A 193 IVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSV 272 (341)
T ss_dssp EEEEEEEEEECSCEEEEEEEEEEEEEESCGGGCEEEEEEEEEEECCCC------CEEEEEESTTTCCCCCEEEEETTEEE
T ss_pred EEEEEEEEEeccceEEEEEEEEEEEEEcCCCCeeeEEEEEEEEEEeCCCccCCCEEEEEEEcCCCCCCCcchhcCCeEEE
Confidence 1 02456788999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEecCCceeeeeeeeccCcce
Q psy9998 179 KYFLNLVLMDEEDRRYFKQQVFTPNLIK 206 (288)
Q Consensus 179 ~Y~l~lvl~de~~rryfk~~ei~~~~~k 206 (288)
+|+|+|+|+|++||||||||||+....+
T Consensus 273 ~Y~Lnlvlvde~~rryfk~~EI~L~R~~ 300 (341)
T 2fau_A 273 RYFLNLVLVDEEDRRYFKQQEIILWRKA 300 (341)
T ss_dssp EEEEEEEEEETTCCEEEEEEEEEEECBC
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEEECC
Confidence 9999999999999999999998765544
No 4
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=99.92 E-value=2.1e-24 Score=205.18 Aligned_cols=197 Identities=45% Similarity=0.674 Sum_probs=140.5
Q ss_pred CCceEEEEEeCCCCCceeEEEecC-CCcEEEEE-----------EEecCCceeeEEEE--EECCCCceeeEecEEEEEEE
Q psy9998 7 GQSADIEIKLDGTDTRKLADIKSD-DGKKERFY-----------LYYDGESVTGQVNI--VLKKHGSKLEHQGIKIEFIG 72 (288)
Q Consensus 7 ~~~~~i~I~ld~e~~r~~v~~k~~-~gk~~~~p-----------iy~dge~V~G~V~I--~~~~~Gk~leH~GI~veliG 72 (288)
|.....+++.+|+...++|.++.+ +|++.+|. ++++.....-.+.. .+.+||+.-.-+-+.++|.-
T Consensus 36 ~~~~~~pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~~~~~~~~f~~~~~eL~~pG~L~~G~~fpF~F~l 115 (340)
T 2r51_A 36 GKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTH 115 (340)
T ss_dssp SCEEEEEEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGGGTTCCEEEEEEEEEEECSEEECSCEEEEEEECS
T ss_pred CcEeecCcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEecCCCcEEEEEEEEEecCCCccCCCcEEeeEeCC
Confidence 456788999999999999999988 77665554 45665555554443 44445543222226666642
Q ss_pred EEEEeeccCCe---------------------EEEEEEEEEeeCCCccCcCceeeEEE-----eccCccccc--cccccc
Q psy9998 73 QIELYYDRGNH---------------------HEFVSLVKELARPGELIQNTTYKFEF-----LNVEKPYES--YTGSNV 124 (288)
Q Consensus 73 ~Ie~~~d~~~~---------------------~ef~~~~~eL~~pG~l~~~~~i~FeF-----~~vek~yES--Y~G~~V 124 (288)
.+..|+++.+ .+...+|..+..+.+++. ++++|. .+++..|.+ |+-.++
T Consensus 116 -p~~l~eSy~G~~g~IrY~vkv~i~Rp~~di~~~~eF~V~~~~~~p~~~~--pIk~Evgi~~cl~Ie~~~~ks~y~lgd~ 192 (340)
T 2r51_A 116 -VEKPYESYTGQNVKLRYFLRATISRRLNDVVKEMDIVVHTLSTYPELNS--SIKMEVGIEDCLHIEFEYNKSKYHLKDV 192 (340)
T ss_dssp -BCCCSCCEECSSEEEEEEEEEEECCSSCCEEEEEEEEEECCCCCCCCCC--CEEEEEEETTTEEEEEEESCSEEETTCE
T ss_pred -CCCCCcCeEeeeEEEEEEEEEEEEecCCCceEEEEEEEEeCCCCCccCC--CEeccccCCceEEEEEEECcccccCCCe
Confidence 2222222222 344555666655555543 566665 345555654 654441
Q ss_pred c--------------------------cCCCcccccceeEEEEEeecCCccCCceeeEEEeccCccCCcchhhhccceeE
Q psy9998 125 F--------------------------TPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSV 178 (288)
Q Consensus 125 r--------------------------~~~~~~~~e~~ti~~~EimDG~P~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv 178 (288)
- ..+++..+|+++|++||||||+|+||++|||||+|++++||||+.|++++|||
T Consensus 193 I~G~I~f~~s~i~Ik~iel~LiR~Et~~~~~~~~~e~~~i~k~eImdG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV 272 (340)
T 2r51_A 193 IVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSV 272 (340)
T ss_dssp EEEEEEEEEECSCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEESCCCTTCEEEEEEEGGGSCCCCCEEEETTTEEE
T ss_pred EEEEEEEEEeeceeEEEEEEEEEEEEEecCCCeeEEEEEEEEEEEecCCccCCCEEEEEEECCCCCCCCCccccCCeEEE
Confidence 1 02567788999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEecCCceeeeeeeeccCcce
Q psy9998 179 KYFLNLVLMDEEDRRYFKQQVFTPNLIK 206 (288)
Q Consensus 179 ~Y~l~lvl~de~~rryfk~~ei~~~~~k 206 (288)
+|+|+|+|+|+++|+||||++|+....+
T Consensus 273 ~Y~Lnlvl~~e~~~~~~kq~pI~L~R~~ 300 (340)
T 2r51_A 273 RYYLNLVLIDEEERRYFKQQEVVLWRKG 300 (340)
T ss_dssp EEEEEEEEEETTCCEEEEEEEEEEECCC
T ss_pred EEEEEEEEEeCCCcEEEEEeeEEEEECC
Confidence 9999999999999999999999875544
No 5
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=94.90 E-value=1.6 Score=41.82 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=32.5
Q ss_pred EEEEEEEeccccceeecceEEeEEEEEE-eecceeEEEEEEEEEE
Q psy9998 234 CLHIEFEYNKCNTWNLKDVIVGKIYFLL-VRIKIKHMEIAIIKRE 277 (288)
Q Consensus 234 ~lhief~y~k~~~~~l~d~i~G~i~f~l-~~~~ik~mei~i~r~E 277 (288)
-+|++..++|+- |.--+.|--.+...- ....|+.++++|++.-
T Consensus 196 ~l~l~~sldk~~-Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~ 239 (393)
T 1g4m_A 196 PLHLEASLDKEI-YYHGEPISVNVHVTNNTNKTVKKIKISVRQYA 239 (393)
T ss_dssp CEEEEEEESCSE-EETTCCEEEEEEEEECSSCCEEEEEEEEEEEE
T ss_pred CEEEEEEECCce-EcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEE
Confidence 388999999988 988888865555543 3567888888888865
No 6
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=70.63 E-value=78 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=30.3
Q ss_pred EEEEEEEeccccceeecceEEeEEEEEEe---ecceeEEEEEEEEEEe
Q psy9998 234 CLHIEFEYNKCNTWNLKDVIVGKIYFLLV---RIKIKHMEIAIIKRET 278 (288)
Q Consensus 234 ~lhief~y~k~~~~~l~d~i~G~i~f~l~---~~~ik~mei~i~r~Et 278 (288)
-||++..++|.- |.--+.|- |.+.+. ...||.+.+.+++.=+
T Consensus 193 pl~l~vsLdK~~-Y~pGE~I~--V~v~I~N~Ssk~Vk~Ikv~L~Q~~~ 237 (392)
T 1suj_A 193 PLHLEASLDKEI-YYHGEPIN--VNVKINNTTGKIVKKIKIIVEQVTD 237 (392)
T ss_dssp EEEEEEEESCSE-EETTCCEE--EEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred CEEEEEEeCCcc-ccCCCEEE--EEEEEECCCCCcEeEEEEEEEEEEE
Confidence 389999999998 98888885 444332 3567777777777554
No 7
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=37.81 E-value=26 Score=24.82 Aligned_cols=26 Identities=19% Similarity=0.620 Sum_probs=22.2
Q ss_pred hccceeEeEEEEEEEEecCCceeeee
Q psy9998 172 INKKFSVKYFLNLVLMDEEDRRYFKQ 197 (288)
Q Consensus 172 v~~~Fsv~Y~l~lvl~de~~rryfk~ 197 (288)
+.|.|-=+|-+...|.|.+|+.|+.-
T Consensus 2 vqndf~dsy~~t~ll~dddg~q~~e~ 27 (56)
T 2le2_A 2 VQNDFVDSYDVTMLLQDDDGKQYYEY 27 (56)
T ss_dssp CCSSSCSSEEEEEEEECTTSCEEEEE
T ss_pred cccccccceeEEEEEEcCCCceeeee
Confidence 46778888999999999999999743
No 8
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=29.57 E-value=3.9e+02 Score=25.70 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=30.6
Q ss_pred ccEEEEEEEeccccceeecceEEeEEEEEE-eecceeEEEEEEEEEEe
Q psy9998 232 EDCLHIEFEYNKCNTWNLKDVIVGKIYFLL-VRIKIKHMEIAIIKRET 278 (288)
Q Consensus 232 e~~lhief~y~k~~~~~l~d~i~G~i~f~l-~~~~ik~mei~i~r~Et 278 (288)
..-||++..++|.- |.--+.|-=.+.+.- ....||.+.+.+++.-+
T Consensus 210 sGpl~L~vsLdK~~-Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~ 256 (380)
T 3ugu_A 210 DKPLRLAVSLSKEI-YYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTN 256 (380)
T ss_dssp CCEEEEEEEESCSE-EETTCCEEEEEEEEECSSSCEEEEEEEEEEEEE
T ss_pred CCCEEEEEEeCCcc-CcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEE
Confidence 34588888888888 877777764444432 33556777777776653
No 9
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=13.53 E-value=3.1e+02 Score=21.45 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=24.6
Q ss_pred CCccC-CceeeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCCcee
Q psy9998 146 GAPVR-GESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRY 194 (288)
Q Consensus 146 G~P~~-ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rry 194 (288)
+||++ |+..=...-|.=....|.. +|.+++.|.|++++..
T Consensus 79 ~CPl~~G~~~~y~~~lpV~~~~P~~---------~~~v~~~L~d~~~~~l 119 (130)
T 1nep_A 79 RCPIEKDKTYNYVNKLPVKNEYPSI---------KVVVEWELTDDKNQRF 119 (130)
T ss_dssp CSSBCTTCEEEEEEEEECCTTSCSS---------EEEEEEEEECTTSCEE
T ss_pred cCcccCCcEEEEEEEeEecccCCCc---------cEEEEEEEEcCCCCEE
Confidence 35555 5554454444433445543 4899999999988644
No 10
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=12.89 E-value=3.3e+02 Score=19.88 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=28.4
Q ss_pred cCCceeeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCCceeeeeee
Q psy9998 149 VRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQV 199 (288)
Q Consensus 149 ~~ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~e 199 (288)
.-||+|=+|.++..-++.|.- + =.+.+.|.|.+|++..+.+.
T Consensus 14 rPGetV~~~~~~~~~~~~p~~----~-----~~~~v~l~dp~g~~v~~~~~ 55 (102)
T 2p9r_A 14 KPGQTVKFRVVSMDENFHPLN----E-----LIPLVYIQDPKGNRIAQWQS 55 (102)
T ss_dssp CTTCEEEEEEEEECGGGCBCC----C-----EEEEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEEEEEECCCCcCCC----C-----CceEEEEECCCCCEEEEEEe
Confidence 357777789887665665542 1 13678899999998865333
Done!