Query psy9998
Match_columns 288
No_of_seqs 153 out of 333
Neff 4.4
Searched_HMMs 13730
Date Sat Aug 17 01:00:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9998.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9998hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vzsa3 b.1.4.1 (A:675-777) Ex 12.8 50 0.0036 23.8 2.3 13 180-192 72-84 (103)
2 d2nq3a1 b.7.1.1 (A:13-145) E3 12.6 42 0.0031 24.3 1.9 45 217-264 49-93 (133)
3 d1jz8a1 b.1.4.1 (A:220-333) be 9.4 93 0.0068 21.2 2.7 14 180-193 90-103 (114)
4 d1wfma_ b.7.1.2 (A:) Synaptota 8.6 1.8E+02 0.013 20.5 4.3 47 217-266 70-120 (138)
5 d2axto1 f.4.1.4 (O:30-271) Man 7.4 2.4E+02 0.017 23.5 4.9 71 44-124 76-153 (242)
6 d1ogpa2 d.176.1.1 (A:2-262) Su 7.1 53 0.0039 27.5 0.5 53 136-198 185-238 (261)
7 d1nb5i_ d.17.1.2 (I:) Cystatin 6.9 1.2E+02 0.0086 22.0 2.4 20 221-240 51-70 (98)
8 d1e2wa2 b.84.2.2 (A:169-232) C 6.5 3.3E+02 0.024 17.5 4.6 26 13-38 13-39 (64)
9 d1vjja2 b.1.5.1 (A:479-593) Tr 6.1 4.3E+02 0.031 18.4 5.5 66 43-120 17-82 (115)
10 d1nepa_ b.1.18.7 (A:) Epididym 6.0 3.7E+02 0.027 19.0 5.0 39 147-194 80-119 (130)
No 1
>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=12.76 E-value=50 Score=23.76 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=11.9
Q ss_pred EEEEEEEEecCCc
Q psy9998 180 YFLNLVLMDEEDR 192 (288)
Q Consensus 180 Y~l~lvl~de~~r 192 (288)
|||+|.|.|+.|+
T Consensus 72 ~FlrL~L~d~~g~ 84 (103)
T d2vzsa3 72 YLAKNVLTDSSGK 84 (103)
T ss_dssp EEEEEEEECTTCC
T ss_pred EEEEEEEECCCCC
Confidence 9999999998884
No 2
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.63 E-value=42 Score=24.31 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=29.6
Q ss_pred cCCCCCCCceeeeCCccEEEEEEEeccccceeecceEEeEEEEEEeec
Q psy9998 217 SYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRI 264 (288)
Q Consensus 217 ~~p~~~~~i~mevgie~~lhief~y~k~~~~~l~d~i~G~i~f~l~~~ 264 (288)
..|.-|....+.+..++-|+++. ||+.. + -+|.++|++.+-|..+
T Consensus 49 ~nP~wne~f~f~~~~~~~l~~~V-~d~d~-~-~~d~~iG~~~i~L~~l 93 (133)
T d2nq3a1 49 NSPKWKQPLTVIVTPVSKLHFRV-WSHQT-L-KSDVLLGTAALDIYET 93 (133)
T ss_dssp SSCEEEEEEEEEECTTCEEEEEE-EECCS-S-SCCEEEEEEEEEHHHH
T ss_pred ccEEEcceEEEEEEecceeEEEE-EEccC-C-CCCceEEEEEEEHHHh
Confidence 34555555566666666677765 55444 3 2689999999987655
No 3
>d1jz8a1 b.1.4.1 (A:220-333) beta-Galactosidase, domains 2 and 4 {Escherichia coli [TaxId: 562]}
Probab=9.37 E-value=93 Score=21.23 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=12.5
Q ss_pred EEEEEEEEecCCce
Q psy9998 180 YFLNLVLMDEEDRR 193 (288)
Q Consensus 180 Y~l~lvl~de~~rr 193 (288)
|.|.+.|.|++|+-
T Consensus 90 Y~l~v~L~~~~g~~ 103 (114)
T d1jz8a1 90 YRAVVELHTADGTL 103 (114)
T ss_dssp EEEEEEEEETTSCE
T ss_pred EEEEEEEEcCCCCE
Confidence 99999999999853
No 4
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.57 E-value=1.8e+02 Score=20.48 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=28.9
Q ss_pred cCCCCCCCceeeeCCc----cEEEEEEEeccccceeecceEEeEEEEEEeecce
Q psy9998 217 SYPEMNSPIKMEVGIE----DCLHIEFEYNKCNTWNLKDVIVGKIYFLLVRIKI 266 (288)
Q Consensus 217 ~~p~~~~~i~mevgie----~~lhief~y~k~~~~~l~d~i~G~i~f~l~~~~i 266 (288)
..|.-|....+++-.+ ..|+++. |+... + -+|.++|++.|-|..+..
T Consensus 70 ~~P~wne~f~f~v~~~~l~~~~L~~~V-~d~~~-~-~~~~~iG~~~i~L~~l~~ 120 (138)
T d1wfma_ 70 LHTTWEEGLVLPLAEEELPTATLTLTL-RTCDR-F-SRHSVAGELRLGLDGTSV 120 (138)
T ss_dssp SSEECSSCEEEECCTTSSTTCEEEEEE-EECCS-S-CTTSCSEEEEEESSSSSS
T ss_pred CCceEeeeEEEEeeehhccceEEEEEE-eeecc-c-ccceeeeEEEEEhHHccC
Confidence 3455566666665443 3455544 33333 3 357789999999887754
No 5
>d2axto1 f.4.1.4 (O:30-271) Manganese-stabilising protein, PsbO {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.37 E-value=2.4e+02 Score=23.48 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=45.3
Q ss_pred CceeeEEEEEECCCC--ceeeEecEEEEEEEEEEEeeccCCeEEEEEEEEEeeCCCc-----cCcCceeeEEEeccCccc
Q psy9998 44 ESVTGQVNIVLKKHG--SKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGE-----LIQNTTYKFEFLNVEKPY 116 (288)
Q Consensus 44 e~V~G~V~I~~~~~G--k~leH~GI~veliG~Ie~~~d~~~~~ef~~~~~eL~~pG~-----l~~~~~i~FeF~~vek~y 116 (288)
+.|.|.+.+... | +-.|-.||....+- .+.-++....|+..+++|...+. +...+.+.=+ +.-
T Consensus 76 d~i~G~l~v~~d--G~l~f~E~dGiDf~~iT---VqlPGGErVPFlFtvK~LvA~~~~~~ssi~tst~f~G~-----f~V 145 (242)
T d2axto1 76 DQIQGELKVNSD--GSLTFVEEDGIDFQPVT---VQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGE-----FNV 145 (242)
T ss_dssp EEEEEEEEECST--TCEEEECCEEECEEEEE---EEESSSCEEEEEEECEEEEEEECSSCCSBCTTCEEEEE-----EEE
T ss_pred hheeEeeEeCCC--CceEEEEeCCeecceEE---EEcCCCcccceEEEehheeEecCCCCCcccccceeeee-----Eec
Confidence 678888777533 4 33466778777553 35667889999999999976332 3333333323 446
Q ss_pred cccccccc
Q psy9998 117 ESYTGSNV 124 (288)
Q Consensus 117 ESY~G~~V 124 (288)
.||+|.+.
T Consensus 146 PSYR~s~F 153 (242)
T d2axto1 146 PSYRTANF 153 (242)
T ss_dssp CCSSCTTC
T ss_pred cccccccc
Confidence 78888774
No 6
>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=7.14 E-value=53 Score=27.51 Aligned_cols=53 Identities=28% Similarity=0.568 Sum_probs=39.9
Q ss_pred eeEEEEEeecCCccCCce-eeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCCceeeeee
Q psy9998 136 ETIAKYEIMDGAPVRGES-IPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQ 198 (288)
Q Consensus 136 ~ti~~~EimDG~P~~ge~-IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rryfk~~ 198 (288)
+.+--|+ |||.|..-+. =|+||..+++. .-=|||+--++.+.|++...|+.++
T Consensus 185 dvlLA~~-mNGepLp~~hG~PlRLvVPg~~---------G~~svKWl~~I~v~d~~~~g~w~~~ 238 (261)
T d1ogpa2 185 DVLLAYE-MNGETLNRDHGFPLRVVVPGVI---------GARSVKWLDSINVIAEESQGFFMQK 238 (261)
T ss_dssp CCEEEEE-ETTEECCTTTTTTCEEECTTSC---------GGGSCCSEEEEEEESSCCCCHHHHS
T ss_pred ceEEEEe-eCCcccccccCCcEEEEccCce---------eeeCceEeeEEEEEecCCCCcceec
Confidence 4555564 8999988877 69999988742 2236779999999999988886443
No 7
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.90 E-value=1.2e+02 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.3
Q ss_pred CCCCceeeeCCccEEEEEEE
Q psy9998 221 MNSPIKMEVGIEDCLHIEFE 240 (288)
Q Consensus 221 ~~~~i~mevgie~~lhief~ 240 (288)
.|-=||+.||=++++|+...
T Consensus 51 tNYfIKV~vG~~~~vHlrVf 70 (98)
T d1nb5i_ 51 TNYYIKVRAGDNKYMHLKVF 70 (98)
T ss_dssp EEEEEEEECSSSCEEEEEEE
T ss_pred eeEEEEEEeCCCcEEEEEEe
Confidence 46679999999999999876
No 8
>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.46 E-value=3.3e+02 Score=17.47 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=15.5
Q ss_pred EEEe-CCCCCceeEEEecCCCcEEEEE
Q psy9998 13 EIKL-DGTDTRKLADIKSDDGKKERFY 38 (288)
Q Consensus 13 ~I~l-d~e~~r~~v~~k~~~gk~~~~p 38 (288)
.|.. ++......+.+.+++|...++.
T Consensus 13 ~I~~~~~~kg~~~I~I~~~dGe~~~y~ 39 (64)
T d1e2wa2 13 AITALSEKKGGFEVSIEKANGEVVVDK 39 (64)
T ss_dssp EEEESSSSSCCEEEEEECTTSCEEEEE
T ss_pred EEEeecccCCcEEEEEECCCCCEEEEE
Confidence 3443 3444455677888888665555
No 9
>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
Probab=6.08 E-value=4.3e+02 Score=18.38 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=40.1
Q ss_pred CCceeeEEEEEECCCCceeeEecEEEEEEEEEEEeeccCCeEEEEEEEEEeeCCCccCcCceeeEEEeccCccccccc
Q psy9998 43 GESVTGQVNIVLKKHGSKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYT 120 (288)
Q Consensus 43 ge~V~G~V~I~~~~~Gk~leH~GI~veliG~Ie~~~d~~~~~ef~~~~~eL~~pG~l~~~~~i~FeF~~vek~yESY~ 120 (288)
|+++.=++.+.=. . =+.+.+++.+.+++- +|.+....++......+.-++. ...++++.+. |+.|.
T Consensus 17 G~Df~v~l~~~N~--s--~~~~~v~l~l~a~av-~YtG~~~~~~~~~~~~v~L~p~--~~~~v~~~v~-----y~~Y~ 82 (115)
T d1vjja2 17 GKEVNLVLLLKNL--S--RDTKTVTVNMTAWTI-IYNGTLVHEVWKDSATMSLDPE--EEAEHPIKIS-----YAQYE 82 (115)
T ss_dssp TSCEEEEEEEEEC--S--SSCEEEEEEEEEEEE-CTTCCEEEEEEEEEEEEEECTT--CEEEEEEEEC-----HHHHH
T ss_pred CCCEEEEEEEEEC--C--CCCEEEEEEEEEEEE-EeCCcCchheEEeeEEEEECCC--CeEEEEEEEC-----HHHHh
Confidence 5566555555322 2 256789999999764 8888888888666665543322 2234555544 66664
No 10
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.97 E-value=3.7e+02 Score=18.96 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=24.9
Q ss_pred CccC-CceeeEEEeccCccCCcchhhhccceeEeEEEEEEEEecCCcee
Q psy9998 147 APVR-GESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRY 194 (288)
Q Consensus 147 ~P~~-ge~IPiRl~L~~~~ltPT~~~v~~~Fsv~Y~l~lvl~de~~rry 194 (288)
||++ |+..-.++-+.=....|.. +|.+++.|.|++++..
T Consensus 80 CPl~~G~~~~y~~~~~I~~~~P~~---------~~~v~~~l~d~~~~~i 119 (130)
T d1nepa_ 80 CPIEKDKTYNYVNKLPVKNEYPSI---------KVVVEWELTDDKNQRF 119 (130)
T ss_dssp SSBCTTCEEEEEEEEECCTTSCSS---------EEEEEEEEECTTSCEE
T ss_pred CCccCCceEEEEEEEEcchhhccE---------EEEEEEEEEcCCCCEE
Confidence 4443 3444455555444556655 3999999999998654
Done!