RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9998
(288 letters)
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport;
HET: CAF; 2.10A {Homo sapiens}
Length = 341
Score = 238 bits (608), Expect = 1e-77
Identities = 138/284 (48%), Positives = 183/284 (64%), Gaps = 66/284 (23%)
Query: 1 MSFFG--FGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHG 58
MSF G FG +I+I L+ +TRK+A++K++DGK E+ YL+YDGESV+G+VN+ K+ G
Sbjct: 3 MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPG 62
Query: 59 SKLEHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYES 118
+LEHQGI+IEF+GQIEL+ D+ N HEFV+LVKELA PGEL Q+ +Y FEF+ VEKPYES
Sbjct: 63 KRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES 122
Query: 119 YTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSV 178
Y G+NV +
Sbjct: 123 YIGANV----------------------------------------------------RL 130
Query: 179 KYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIE 238
+YFL + ++ RR +L+KE D+IVH L++YP++N+ IKMEVGIED LHIE
Sbjct: 131 RYFLKVTIV----RRLT-------DLVKEYDLIVHQLATYPDVNNSIKMEVGIEDXLHIE 179
Query: 239 FEYNKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
FEYNK + ++LKDVIVGKIYFLLVRIKI+HME+ +IK+E TG G
Sbjct: 180 FEYNK-SKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIG 222
Score = 107 bits (267), Expect = 3e-27
Identities = 58/77 (75%), Positives = 64/77 (83%)
Query: 125 FTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFLNL 184
P+ E ETIAKYEIMDGAPV+GESIPIR+FLAGYD PTMRD+NKKFSV+YFLNL
Sbjct: 219 TGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNL 278
Query: 185 VLMDEEDRRYFKQQVFT 201
VL+DEEDRRYFKQQ
Sbjct: 279 VLVDEEDRRYFKQQEII 295
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer,
fibronectin III, arrestin domain, membrane,
phosphorylation, protein transport; 2.10A {Mus musculus}
PDB: 3lh9_A 3lh8_A 3lha_A
Length = 340
Score = 233 bits (594), Expect = 2e-75
Identities = 147/281 (52%), Positives = 184/281 (65%), Gaps = 64/281 (22%)
Query: 2 SFFGFGQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKL 61
GQS ++EI L+ ++RK A+ K++DGKKE+++L+YDGE+V+G+V++ LK +L
Sbjct: 6 HHHHMGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRL 65
Query: 62 EHQGIKIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTG 121
EHQGIKIEFIGQIELYYDRGNHHEFVSLVK+LARPGE+ Q+ + FEF +VEKPYESYTG
Sbjct: 66 EHQGIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTG 125
Query: 122 SNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYF 181
+ ++YF
Sbjct: 126 ----------------------------------------------------QNVKLRYF 133
Query: 182 LNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEY 241
L + RR +++KE+DI+VHTLS+YPE+NS IKMEVGIEDCLHIEFEY
Sbjct: 134 LRATIS----RRL-------NDVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEY 182
Query: 242 NKCNTWNLKDVIVGKIYFLLVRIKIKHMEIAIIKRETTGTG 282
NK + ++LKDVIVGKIYFLLVRIKIKHMEI IIKRETTGTG
Sbjct: 183 NK-SKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTG 222
Score = 108 bits (271), Expect = 8e-28
Identities = 79/199 (39%), Positives = 104/199 (52%), Gaps = 32/199 (16%)
Query: 7 GQSADIEIKLDGTDTRKLADIKSDDGKKERFYLYYDGESVTGQVNIVLKKHGSKLEHQGI 66
GQ+ + L T +R+L D+ K+ ++ +I ++ H
Sbjct: 125 GQNVKLRYFLRATISRRLNDVV----KEMDIVVHTLSTYPELNSSIKMEVGIEDCLH--- 177
Query: 67 KIEFIGQIELYYDRGNHHEFVSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNV-- 124
IE Y++ +H L K FL V + +
Sbjct: 178 -------IEFEYNKSKYH--------------LKDVIVGKIYFLLVRIKIKHMEIDIIKR 216
Query: 125 --FTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLAGYDLAPTMRDINKKFSVKYFL 182
PNV++EN+TIAKYEIMDGAPVRGESIPIR+FLAGY+L PTMRDINKKFSV+Y+L
Sbjct: 217 ETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYL 276
Query: 183 NLVLMDEEDRRYFKQQVFT 201
NLVL+DEE+RRYFKQQ
Sbjct: 277 NLVLIDEEERRYFKQQEVV 295
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.001
Identities = 49/245 (20%), Positives = 84/245 (34%), Gaps = 76/245 (31%)
Query: 103 TTYK--FEFLNVEKPYESYTGSNVFTPRPNVFNENET---IAKY----------EIMDGA 147
T +K +FL+ +E + KY E++
Sbjct: 272 TRFKQVTDFLSAATTTHI-----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 148 PVR----GESIPIRVFLAGYDLAPTMRDIN-KKFS--VKYFLNLVLMDEEDRRYFKQ-QV 199
P R ESI R LA +D + +N K + ++ LN VL E R+ F + V
Sbjct: 327 PRRLSIIAESI--RDGLATWD---NWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSV 380
Query: 200 F------TPNLIK---------ELDIIVHTL--------------SSYPEMNSPIKMEVG 230
F L+ ++ ++V+ L S P + +K+++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 231 IEDCLH---IEFEYNKCNTWNLKDVIV----GKIYFLLVRIKIKHM-EIAIIKRETTGTG 282
E LH ++ YN T++ D+I Y + H+ I +R T
Sbjct: 441 NEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRM 495
Query: 283 IFLSL 287
+FL
Sbjct: 496 VFLDF 500
Score = 37.9 bits (87), Expect = 0.004
Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 74/236 (31%)
Query: 103 TTYKFEFLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESI-PIRVFLA 161
+ K E Y R ++N+N+ AKY + R + +R L
Sbjct: 96 SPIKTEQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQAL- 144
Query: 162 GYDLAPT-------MRDINKKFSVKYFL-NLVLMDEEDRRYFKQQVF--------TPNLI 205
+L P + K + + V + + + ++F +P +
Sbjct: 145 -LELRPAKNVLIDGVLGSGK--TW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 206 KE-----LDIIVHTLSSYPEMNSPIKMEVG-IEDCLHIEF---EYNKC-----NTWNLK- 250
E L I +S + +S IK+ + I+ L Y C N N K
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 251 --------------------DVIVGKIYFLLVRIKIKHMEIAIIKRETTGTGIFLS 286
D + I + H + + E + L
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATT---THISLDHHSMTLTPDEV--KSLLLK 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.8
Identities = 30/150 (20%), Positives = 47/150 (31%), Gaps = 50/150 (33%)
Query: 45 SVTG----QVNIVLKKHGSKL-EHQGIKIEFIGQIELYYDRGN-HHEFV------SL--- 89
S++ QV + K S L + + +I L N V SL
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQV------EISLV----NGAKNLVVSGPPQSLYGL 389
Query: 90 ---VKELARPGELIQN-TTY-----KF--EFLNVEKPYES-YTGSNVFTPRPNVFNENET 137
+++ P L Q+ + KF FL V P+ S +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS-----------DL 438
Query: 138 IAKYEIMDGAPVRGESIPIRVFLA--GYDL 165
I K + + + I I V+ G DL
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
>3jvf_C Interleukin-17 receptor A; cytokine, cysteine-knot growth factor,
receptor complex, disulfide bond, glycoprotein,
secreted, membrane, transmembrane; HET: MLY NAG; 3.30A
{Homo sapiens}
Length = 286
Score = 28.3 bits (62), Expect = 3.2
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 159 FLAGYDLAPTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSY 218
+L G +L+ + N++ V++ L R F F + +E ++ VH L
Sbjct: 77 YLEGAELSVLQLNTNERLCVRFEFLSKLRHHHRRWRFTFSHFVVDPDQEYEVTVHHLPK- 135
Query: 219 PEMNS---PIKMEVGIEDCLHIEFEYNK 243
P + + DC H +
Sbjct: 136 PIPDGDPNHQSKNFLVPDCEHARMKVTT 163
>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose;
dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB:
2o2d_A* 1q50_A
Length = 613
Score = 27.7 bits (62), Expect = 5.8
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 61 LEHQGIKI---EFIGQIELYYDRGNHHE 85
L HQG + +FIG I+ G+HH+
Sbjct: 447 LIHQGTNLIPCDFIGAIQSQNKIGDHHK 474
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733,
cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES;
1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A*
3q88_A*
Length = 543
Score = 27.6 bits (62), Expect = 6.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 61 LEHQGIKI---EFIGQIELYYDRGNHHE 85
L HQG +FI +++ NH +
Sbjct: 385 LLHQGNIFIPVDFIAIATSHHNYDNHQQ 412
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi
glycolysis, structural genomics, center for STRU
genomics of infectious diseases; HET: PG4; 1.50A {Vibrio
cholerae} PDB: 3nbu_A
Length = 574
Score = 27.2 bits (61), Expect = 6.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 61 LEHQGIKI---EFIGQIELYYDRGNHHEF 86
L HQG K+ +FI + G+HH+
Sbjct: 416 LIHQGTKLIPCDFIAPAVSHNLVGDHHQK 444
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.15.3.3 PDB: 1xo3_A
Length = 114
Score = 26.1 bits (57), Expect = 7.4
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 66 IKIEFIGQIELYYDRGNHHEF-VSLVKELARPGELIQNTTYKFEFLNVEKPYESYTGSNV 124
+K+EF G EL +D H+ + +E L+ + N+
Sbjct: 14 VKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLV-----------------WIKKNL 56
Query: 125 FTPRPNVFNENETI 138
RP +F + +++
Sbjct: 57 LKERPELFIQGDSV 70
>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
phosphoglucose isomerase, substrate,
D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
mexicana mexicana} SCOP: c.80.1.2
Length = 605
Score = 26.9 bits (60), Expect = 10.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 61 LEHQGIKI---EFIGQIELYYDRGNHHEF 86
L HQG KI +FIG ++ G+HH
Sbjct: 446 LIHQGTKIIPCDFIGCVQTQNRVGDHHRT 474
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.408
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,607,288
Number of extensions: 285971
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 21
Length of query: 288
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 195
Effective length of database: 4,105,140
Effective search space: 800502300
Effective search space used: 800502300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)