RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9998
         (288 letters)



>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein,
           PAL, periplasmic domain {Haemophilus influenzae [TaxId:
           727]}
          Length = 134

 Score = 27.1 bits (59), Expect = 1.4
 Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 12/89 (13%)

Query: 166 APTMRDINKKFSVKYFLNLVLMDEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPI 225
             ++ D+ ++++  YF             F +   T   ++ LD     L++ P     +
Sbjct: 19  GYSVADLQQRYNTVYF------------GFDKYDITGEYVQILDAHAAYLNATPAAKVLV 66

Query: 226 KMEVGIEDCLHIEFEYNKCNTWNLKDVIV 254
           +                +     +K  + 
Sbjct: 67  EGNTDERGTPEYNIALGQRRADAVKGYLA 95


>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 97

 Score = 25.8 bits (56), Expect = 2.4
 Identities = 9/53 (16%), Positives = 13/53 (24%)

Query: 109 FLNVEKPYESYTGSNVFTPRPNVFNENETIAKYEIMDGAPVRGESIPIRVFLA 161
           F                       + +   A    M G P+ G    +RV  A
Sbjct: 38  FDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90


>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus
           aculeatus) [TaxId: 5053]}
          Length = 334

 Score = 26.2 bits (57), Expect = 4.4
 Identities = 9/56 (16%), Positives = 21/56 (37%)

Query: 188 DEEDRRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNK 243
             + + YF + V     +   D     +S YP  ++   +        +++  Y+K
Sbjct: 185 SWDQQNYFYETVLATGELLSTDFDYFGVSYYPFYSASATLASLKTSLANLQSTYDK 240


>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 24.5 bits (53), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 31 DGKKERFYLYYDGESV 46
          DG +E FYL+ DG + 
Sbjct: 67 DGFREGFYLFPDGRNQ 82


>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 450

 Score = 26.0 bits (57), Expect = 6.5
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 9/60 (15%)

Query: 192 RRYFKQQVFTPNLIKELDIIVHTLSSYPEMNSPIKMEVGIEDCLHIEFEYNKCNTWNLKD 251
              FK+ V  P +            +Y E +            ++  FE+ K   + L D
Sbjct: 125 AELFKKGVLYPVVENGELQFKPIQEAYREGD---------PLKINRIFEFRKGLKFKLGD 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,139,450
Number of extensions: 57050
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 11
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)