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cmd.read_pdbstr(""""\ HEADER SCOP/ASTRAL domain d1ubdc4 [45056] 02-JUN-09 0000 \ REMARK 99 \ REMARK 99 ASTRAL ASTRAL-version: 1.75 \ REMARK 99 ASTRAL SCOP-sid: d1ubdc4 \ REMARK 99 ASTRAL SCOP-sun: 45056 \ REMARK 99 ASTRAL SCOP-sccs: g.37.1.1 \ REMARK 99 ASTRAL Source-PDB: 1ubd \ REMARK 99 ASTRAL Source-PDB-REVDAT: 23-DEC-96 \ REMARK 99 ASTRAL Region: c:381-408 \ REMARK 99 ASTRAL ASTRAL-SPACI: 0.29 \ REMARK 99 ASTRAL ASTRAL-AEROSPACI: 0.29 \ REMARK 99 ASTRAL Data-updated-release: 1.61 \ ATOM 683 N ARG C 381 -1.346 58.261 29.188 1.00 43.58 N \ ATOM 684 CA ARG C 381 -0.105 58.893 28.731 1.00 41.86 C \ ATOM 685 C ARG C 381 1.041 58.135 29.472 1.00 41.16 C \ ATOM 686 O ARG C 381 1.611 58.645 30.415 1.00 41.84 O \ ATOM 687 CB ARG C 381 -0.133 60.379 29.106 1.00 40.09 C \ ATOM 688 CG ARG C 381 -0.973 61.260 28.134 1.00 48.58 C \ ATOM 689 CD ARG C 381 -1.812 62.392 28.802 1.00 51.73 C \ ATOM 690 NE ARG C 381 -1.134 63.065 29.920 1.00 58.44 N \ ATOM 691 CZ ARG C 381 -1.419 62.881 31.221 1.00 61.90 C \ ATOM 692 NH1 ARG C 381 -2.383 62.035 31.621 1.00 60.63 N \ ATOM 693 NH2 ARG C 381 -0.732 63.548 32.142 1.00 59.49 N \ ATOM 694 N PRO C 382 1.430 56.931 28.987 1.00 39.87 N \ ATOM 695 CA PRO C 382 2.471 56.081 29.573 1.00 40.40 C \ ATOM 696 C PRO C 382 3.975 56.437 29.486 1.00 43.24 C \ ATOM 697 O PRO C 382 4.837 55.643 29.923 1.00 45.29 O \ ATOM 698 CB PRO C 382 2.189 54.743 28.897 1.00 35.41 C \ ATOM 699 CG PRO C 382 1.868 55.170 27.515 1.00 31.00 C \ ATOM 700 CD PRO C 382 0.940 56.316 27.731 1.00 37.31 C \ ATOM 701 N TYR C 383 4.308 57.597 28.943 1.00 43.54 N \ ATOM 702 CA TYR C 383 5.715 57.965 28.815 1.00 45.29 C \ ATOM 703 C TYR C 383 6.045 59.117 29.698 1.00 44.89 C \ ATOM 704 O TYR C 383 6.153 60.226 29.210 1.00 49.10 O \ ATOM 705 CB TYR C 383 6.023 58.303 27.361 1.00 41.99 C \ ATOM 706 CG TYR C 383 5.973 57.063 26.544 1.00 44.18 C \ ATOM 707 CD1 TYR C 383 6.678 55.934 26.958 1.00 47.18 C \ ATOM 708 CD2 TYR C 383 5.199 56.981 25.406 1.00 42.77 C \ ATOM 709 CE1 TYR C 383 6.614 54.750 26.265 1.00 51.79 C \ ATOM 710 CE2 TYR C 383 5.124 55.792 24.687 1.00 48.82 C \ ATOM 711 CZ TYR C 383 5.839 54.672 25.129 1.00 50.95 C \ ATOM 712 OH TYR C 383 5.791 53.467 24.452 1.00 54.01 O \ ATOM 713 N VAL C 384 6.217 58.875 30.992 1.00 44.87 N \ ATOM 714 CA VAL C 384 6.487 59.984 31.899 1.00 45.87 C \ ATOM 715 C VAL C 384 7.846 60.621 31.672 1.00 45.81 C \ ATOM 716 O VAL C 384 8.819 59.915 31.425 1.00 45.92 O \ ATOM 717 CB VAL C 384 6.318 59.566 33.350 1.00 44.34 C \ ATOM 718 CG1 VAL C 384 6.548 60.758 34.254 1.00 47.77 C \ ATOM 719 CG2 VAL C 384 4.897 59.040 33.567 1.00 45.27 C \ ATOM 720 N CYS C 385 7.877 61.953 31.624 1.00 47.79 N \ ATOM 721 CA CYS C 385 9.124 62.671 31.427 1.00 52.22 C \ ATOM 722 C CYS C 385 10.088 62.261 32.541 1.00 54.64 C \ ATOM 723 O CYS C 385 9.674 61.959 33.676 1.00 57.18 O \ ATOM 724 CB CYS C 385 8.913 64.188 31.449 1.00 56.15 C \ ATOM 725 SG CYS C 385 10.473 65.146 31.587 1.00 60.12 S \ ATOM 726 N PRO C 386 11.394 62.260 32.241 1.00 54.30 N \ ATOM 727 CA PRO C 386 12.421 61.877 33.206 1.00 53.76 C \ ATOM 728 C PRO C 386 12.959 63.004 34.104 1.00 51.47 C \ ATOM 729 O PRO C 386 13.422 62.753 35.217 1.00 50.71 O \ ATOM 730 CB PRO C 386 13.512 61.362 32.286 1.00 55.57 C \ ATOM 731 CG PRO C 386 13.490 62.438 31.207 1.00 52.85 C \ ATOM 732 CD PRO C 386 12.001 62.565 30.931 1.00 52.53 C \ ATOM 733 N PHE C 387 12.915 64.236 33.628 1.00 48.08 N \ ATOM 734 CA PHE C 387 13.462 65.313 34.421 1.00 47.97 C \ ATOM 735 C PHE C 387 12.898 65.402 35.832 1.00 46.59 C \ ATOM 736 O PHE C 387 11.694 65.421 36.033 1.00 46.09 O \ ATOM 737 CB PHE C 387 13.340 66.637 33.660 1.00 49.36 C \ ATOM 738 CG PHE C 387 14.237 66.709 32.468 1.00 54.16 C \ ATOM 739 CD1 PHE C 387 14.096 65.801 31.415 1.00 57.03 C \ ATOM 740 CD2 PHE C 387 15.282 67.622 32.414 1.00 55.31 C \ ATOM 741 CE1 PHE C 387 14.999 65.805 30.328 1.00 56.40 C \ ATOM 742 CE2 PHE C 387 16.193 67.625 31.314 1.00 54.55 C \ ATOM 743 CZ PHE C 387 16.049 66.720 30.285 1.00 51.06 C \ ATOM 744 N ASP C 388 13.791 65.389 36.815 1.00 48.19 N \ ATOM 745 CA ASP C 388 13.417 65.502 38.228 1.00 48.68 C \ ATOM 746 C ASP C 388 12.550 66.767 38.407 1.00 47.42 C \ ATOM 747 O ASP C 388 13.019 67.887 38.268 1.00 47.21 O \ ATOM 748 CB ASP C 388 14.697 65.608 39.100 1.00 46.26 C \ ATOM 749 CG ASP C 388 14.823 64.486 40.164 1.00 47.14 C \ ATOM 750 OD1 ASP C 388 15.180 63.317 39.845 1.00 47.21 O \ ATOM 751 OD2 ASP C 388 14.629 64.802 41.350 1.00 44.12 O \ ATOM 752 N GLY C 389 11.265 66.592 38.636 1.00 47.86 N \ ATOM 753 CA GLY C 389 10.441 67.759 38.837 1.00 50.49 C \ ATOM 754 C GLY C 389 9.754 68.373 37.632 1.00 53.21 C \ ATOM 755 O GLY C 389 9.435 69.561 37.700 1.00 51.32 O \ ATOM 756 N CYS C 390 9.629 67.625 36.521 1.00 55.81 N \ ATOM 757 CA CYS C 390 8.895 68.053 35.305 1.00 53.12 C \ ATOM 758 C CYS C 390 7.893 66.948 35.166 1.00 50.48 C \ ATOM 759 O CYS C 390 8.251 65.796 34.989 1.00 51.29 O \ ATOM 760 CB CYS C 390 9.732 68.078 34.042 1.00 54.05 C \ ATOM 761 SG CYS C 390 8.656 68.274 32.578 1.00 59.42 S \ ATOM 762 N ASN C 391 6.635 67.318 35.159 1.00 49.59 N \ ATOM 763 CA ASN C 391 5.553 66.345 35.154 1.00 51.14 C \ ATOM 764 C ASN C 391 4.787 66.043 33.873 1.00 50.72 C \ ATOM 765 O ASN C 391 3.669 65.511 33.937 1.00 49.89 O \ ATOM 766 CB ASN C 391 4.588 66.790 36.230 1.00 54.86 C \ ATOM 767 CG ASN C 391 4.620 68.288 36.410 1.00 57.67 C \ ATOM 768 OD1 ASN C 391 4.789 69.028 35.422 1.00 53.47 O \ ATOM 769 ND2 ASN C 391 4.583 68.749 37.666 1.00 56.64 N \ ATOM 770 N LYS C 392 5.352 66.393 32.718 1.00 49.50 N \ ATOM 771 CA LYS C 392 4.686 66.131 31.447 1.00 45.58 C \ ATOM 772 C LYS C 392 4.748 64.635 31.131 1.00 44.69 C \ ATOM 773 O LYS C 392 5.768 63.989 31.372 1.00 45.49 O \ ATOM 774 CB LYS C 392 5.322 66.943 30.320 1.00 41.19 C \ ATOM 775 CG LYS C 392 4.718 68.299 30.121 1.00 41.96 C \ ATOM 776 CD LYS C 392 5.706 69.408 30.432 1.00 46.45 C \ ATOM 777 CE LYS C 392 5.213 70.367 31.524 1.00 47.16 C \ ATOM 778 NZ LYS C 392 5.243 69.781 32.901 1.00 53.34 N \ ATOM 779 N LYS C 393 3.621 64.063 30.714 1.00 43.43 N \ ATOM 780 CA LYS C 393 3.569 62.647 30.351 1.00 40.34 C \ ATOM 781 C LYS C 393 3.222 62.683 28.868 1.00 38.86 C \ ATOM 782 O LYS C 393 2.808 63.721 28.345 1.00 41.06 O \ ATOM 783 CB LYS C 393 2.463 61.886 31.100 1.00 38.22 C \ ATOM 784 CG LYS C 393 2.520 61.911 32.590 1.00 37.47 C \ ATOM 785 CD LYS C 393 1.261 61.259 33.189 1.00 43.48 C \ ATOM 786 CE LYS C 393 0.907 61.792 34.615 1.00 48.42 C \ ATOM 787 NZ LYS C 393 2.005 61.689 35.644 1.00 45.46 N \ ATOM 788 N PHE C 394 3.420 61.564 28.188 1.00 38.15 N \ ATOM 789 CA PHE C 394 3.121 61.446 26.774 1.00 36.84 C \ ATOM 790 C PHE C 394 2.599 60.046 26.478 1.00 39.56 C \ ATOM 791 O PHE C 394 2.639 59.152 27.316 1.00 35.59 O \ ATOM 792 CB PHE C 394 4.373 61.704 25.965 1.00 34.83 C \ ATOM 793 CG PHE C 394 5.054 62.960 26.335 1.00 33.86 C \ ATOM 794 CD1 PHE C 394 5.862 63.013 27.455 1.00 34.45 C \ ATOM 795 CD2 PHE C 394 4.796 64.114 25.650 1.00 34.69 C \ ATOM 796 CE1 PHE C 394 6.390 64.203 27.904 1.00 36.55 C \ ATOM 797 CE2 PHE C 394 5.325 65.307 26.086 1.00 40.45 C \ ATOM 798 CZ PHE C 394 6.125 65.350 27.230 1.00 34.93 C \ ATOM 799 N ALA C 395 2.131 59.852 25.263 1.00 44.79 N \ ATOM 800 CA ALA C 395 1.598 58.569 24.886 1.00 49.67 C \ ATOM 801 C ALA C 395 2.230 58.115 23.584 1.00 53.26 C \ ATOM 802 O ALA C 395 1.582 57.451 22.777 1.00 57.70 O \ ATOM 803 CB ALA C 395 0.117 58.686 24.738 1.00 52.41 C \ ATOM 804 N GLN C 396 3.481 58.518 23.367 1.00 53.05 N \ ATOM 805 CA GLN C 396 4.255 58.164 22.179 1.00 51.81 C \ ATOM 806 C GLN C 396 5.693 58.505 22.522 1.00 53.23 C \ ATOM 807 O GLN C 396 5.986 59.652 22.881 1.00 53.14 O \ ATOM 808 CB GLN C 396 3.813 58.975 20.963 1.00 51.17 C \ ATOM 809 CG GLN C 396 2.636 58.377 20.239 1.00 51.02 C \ ATOM 810 CD GLN C 396 2.700 58.601 18.754 1.00 53.40 C \ ATOM 811 OE1 GLN C 396 3.738 58.371 18.116 1.00 54.05 O \ ATOM 812 NE2 GLN C 396 1.590 59.044 18.181 1.00 55.01 N \ ATOM 813 N SER C 397 6.594 57.532 22.417 1.00 52.73 N \ ATOM 814 CA SER C 397 7.985 57.780 22.769 1.00 53.35 C \ ATOM 815 C SER C 397 8.694 58.680 21.781 1.00 50.88 C \ ATOM 816 O SER C 397 9.918 58.806 21.812 1.00 50.14 O \ ATOM 817 CB SER C 397 8.763 56.478 23.004 1.00 56.84 C \ ATOM 818 OG SER C 397 9.845 56.688 23.901 1.00 56.49 O \ ATOM 819 N THR C 398 7.936 59.243 20.852 1.00 48.33 N \ ATOM 820 CA THR C 398 8.499 60.209 19.922 1.00 47.32 C \ ATOM 821 C THR C 398 8.119 61.540 20.584 1.00 46.74 C \ ATOM 822 O THR C 398 8.957 62.357 20.901 1.00 46.88 O \ ATOM 823 CB THR C 398 7.851 60.101 18.549 1.00 48.42 C \ ATOM 824 OG1 THR C 398 6.808 59.106 18.579 1.00 48.26 O \ ATOM 825 CG2 THR C 398 8.892 59.756 17.522 1.00 40.88 C \ ATOM 826 N ASN C 399 6.841 61.654 20.908 1.00 46.99 N \ ATOM 827 CA ASN C 399 6.233 62.799 21.585 1.00 47.67 C \ ATOM 828 C ASN C 399 6.973 63.232 22.864 1.00 43.72 C \ ATOM 829 O ASN C 399 6.992 64.402 23.231 1.00 41.63 O \ ATOM 830 CB ASN C 399 4.807 62.383 22.004 1.00 51.11 C \ ATOM 831 CG ASN C 399 3.739 62.888 21.073 1.00 48.22 C \ ATOM 832 OD1 ASN C 399 3.854 62.806 19.855 1.00 48.13 O \ ATOM 833 ND2 ASN C 399 2.684 63.427 21.653 1.00 50.09 N \ ATOM 834 N LEU C 400 7.464 62.247 23.593 1.00 41.66 N \ ATOM 835 CA LEU C 400 8.160 62.474 24.838 1.00 42.64 C \ ATOM 836 C LEU C 400 9.625 62.830 24.713 1.00 43.20 C \ ATOM 837 O LEU C 400 10.123 63.726 25.401 1.00 42.18 O \ ATOM 838 CB LEU C 400 8.048 61.229 25.715 1.00 43.34 C \ ATOM 839 CG LEU C 400 8.942 61.005 26.949 1.00 48.23 C \ ATOM 840 CD1 LEU C 400 10.254 60.339 26.536 1.00 49.31 C \ ATOM 841 CD2 LEU C 400 9.161 62.285 27.796 1.00 48.07 C \ ATOM 842 N LYS C 401 10.351 62.055 23.925 1.00 42.90 N \ ATOM 843 CA LYS C 401 11.766 62.294 23.827 1.00 40.45 C \ ATOM 844 C LYS C 401 12.155 63.553 23.108 1.00 40.80 C \ ATOM 845 O LYS C 401 13.113 64.194 23.483 1.00 42.26 O \ ATOM 846 CB LYS C 401 12.506 61.040 23.373 1.00 45.09 C \ ATOM 847 CG LYS C 401 12.829 60.069 24.556 1.00 41.64 C \ ATOM 848 CD LYS C 401 12.505 58.596 24.249 1.00 44.46 C \ ATOM 849 CE LYS C 401 13.468 57.895 23.253 1.00 39.89 C \ ATOM 850 NZ LYS C 401 13.466 58.449 21.875 1.00 25.51 N \ ATOM 851 N SER C 402 11.398 63.978 22.125 1.00 40.59 N \ ATOM 852 CA SER C 402 11.774 65.227 21.536 1.00 45.54 C \ ATOM 853 C SER C 402 11.477 66.314 22.590 1.00 48.67 C \ ATOM 854 O SER C 402 12.191 67.295 22.649 1.00 54.29 O \ ATOM 855 CB SER C 402 11.077 65.474 20.188 1.00 49.74 C \ ATOM 856 OG SER C 402 9.657 65.535 20.280 1.00 54.28 O \ ATOM 857 N HIS C 403 10.447 66.146 23.427 1.00 50.57 N \ ATOM 858 CA HIS C 403 10.135 67.115 24.510 1.00 51.57 C \ ATOM 859 C HIS C 403 11.422 67.244 25.317 1.00 54.65 C \ ATOM 860 O HIS C 403 11.880 68.339 25.601 1.00 58.18 O \ ATOM 861 CB HIS C 403 9.002 66.581 25.416 1.00 52.17 C \ ATOM 862 CG HIS C 403 9.019 67.094 26.838 1.00 52.87 C \ ATOM 863 ND1 HIS C 403 8.527 68.322 27.221 1.00 52.87 N \ ATOM 864 CD2 HIS C 403 9.385 66.476 27.995 1.00 51.80 C \ ATOM 865 CE1 HIS C 403 8.591 68.401 28.555 1.00 51.56 C \ ATOM 866 NE2 HIS C 403 9.098 67.305 29.069 1.00 52.94 N \ ATOM 867 N ILE C 404 11.989 66.106 25.706 1.00 54.44 N \ ATOM 868 CA ILE C 404 13.252 66.080 26.414 1.00 50.92 C \ ATOM 869 C ILE C 404 14.217 67.043 25.705 1.00 49.60 C \ ATOM 870 O ILE C 404 14.799 67.893 26.345 1.00 49.73 O \ ATOM 871 CB ILE C 404 13.828 64.648 26.406 1.00 51.26 C \ ATOM 872 CG1 ILE C 404 13.288 63.855 27.594 1.00 50.31 C \ ATOM 873 CG2 ILE C 404 15.353 64.643 26.360 1.00 48.93 C \ ATOM 874 CD1 ILE C 404 14.253 62.762 28.007 1.00 50.46 C \ ATOM 875 N LEU C 405 14.306 66.957 24.380 1.00 51.31 N \ ATOM 876 CA LEU C 405 15.186 67.818 23.587 1.00 55.43 C \ ATOM 877 C LEU C 405 15.034 69.259 23.951 1.00 58.73 C \ ATOM 878 O LEU C 405 16.000 70.018 23.871 1.00 62.81 O \ ATOM 879 CB LEU C 405 14.914 67.714 22.081 1.00 54.89 C \ ATOM 880 CG LEU C 405 15.815 66.812 21.242 1.00 55.92 C \ ATOM 881 CD1 LEU C 405 15.737 67.233 19.768 1.00 58.84 C \ ATOM 882 CD2 LEU C 405 17.251 66.908 21.750 1.00 58.09 C \ ATOM 883 N THR C 406 13.809 69.641 24.294 1.00 60.54 N \ ATOM 884 CA THR C 406 13.495 71.016 24.678 1.00 61.70 C \ ATOM 885 C THR C 406 14.177 71.355 26.007 1.00 59.38 C \ ATOM 886 O THR C 406 14.663 72.464 26.220 1.00 56.73 O \ ATOM 887 CB THR C 406 11.936 71.242 24.781 1.00 64.90 C \ ATOM 888 OG1 THR C 406 11.418 70.707 26.020 1.00 63.38 O \ ATOM 889 CG2 THR C 406 11.213 70.581 23.578 1.00 62.55 C \ ATOM 890 N HIS C 407 14.176 70.384 26.903 1.00 58.78 N \ ATOM 891 CA HIS C 407 14.790 70.546 28.193 1.00 62.75 C \ ATOM 892 C HIS C 407 16.205 71.062 28.085 1.00 66.13 C \ ATOM 893 O HIS C 407 16.567 71.996 28.791 1.00 72.49 O \ ATOM 894 CB HIS C 407 14.830 69.216 28.925 1.00 61.31 C \ ATOM 895 CG HIS C 407 13.652 68.984 29.806 1.00 61.60 C \ ATOM 896 ND1 HIS C 407 13.438 69.642 30.997 1.00 62.17 N \ ATOM 897 CD2 HIS C 407 12.580 68.174 29.634 1.00 62.56 C \ ATOM 898 CE1 HIS C 407 12.261 69.225 31.496 1.00 63.21 C \ ATOM 899 NE2 HIS C 407 11.698 68.330 30.704 1.00 61.97 N \ ATOM 900 N ALA C 408 17.001 70.434 27.219 1.00 67.59 N \ ATOM 901 CA ALA C 408 18.410 70.785 27.017 1.00 65.57 C \ ATOM 902 C ALA C 408 18.626 72.249 26.646 1.00 65.52 C \ ATOM 903 O ALA C 408 19.391 72.902 27.387 1.00 63.93 O \ ATOM 904 CB ALA C 408 19.027 69.872 25.964 1.00 64.25 C \ TER 905 ALA C 408 \ END \ \ ""","d1ubdc4") cmd.color("white" ,"d1ubdc4") cmd.zoom("d1ubdc4", animate=-1) cmd.orient(selection="d1ubdc4", state=0, animate=0) cmd.select("d1ubdc4_aln","resi 388-407") cmd.spectrum(expression="count",selection="d1ubdc4_aln",byres=2) cmd.disable("d1ubdc4_aln") cmd.show_as("cartoon" ,"d1ubdc4")