COMPADRE

COmparison of Multiple Protein sequence Alignments
using Database RElationships

Similarity search with sequence or alignment as a query against a database of protein domains[Doc]

DATA INPUT
Enter query in either of these formats:
A protein sequence   or multiple sequence alignments
                 

Or file name  
DATA SUBMIT
Select Database

Email address to receive the result (Recommended)                
Job ID (optional)                        

Note: Sequence with many residues or homologs may need a long time to complete.
PARAMETERS & DOWNLOADS
Parameters Show/Hide

Documentation

Download COMPADRE package


References:
Jing Tong, Ruslan I. Sadreyev, Jimin Pei, Lisa N. Kinch and Nick V. Grishin, "Using homology relations within a database markedly boosts protein sequence similarity search", Proc Natl Acad Sci U S A. 2015, Accepted

Comments, suggestions and bug reports to:
Last modified: Mon May 11 15:38:07 CDT 2015