Query gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 2 out of 4
Neff 1.5
Searched_HMMs 33803
Date Wed May 18 18:29:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780122.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2au5_A Conserved domain prote 30.9 39 0.0012 15.3 4.1 58 25-84 44-101 (139)
2 >1ddz_A Carbonic anhydrase; al 21.9 57 0.0017 14.3 4.1 47 55-101 162-208 (242)
3 >1wvt_A Hypothetical protein S 18.6 68 0.002 13.8 4.1 32 59-90 23-54 (172)
4 >2obl_A ESCN; ATPase, hydrolas 14.7 66 0.0019 13.9 1.1 38 39-76 38-75 (76)
5 >1s7z_A Gene 0.3 protein; all 14.2 27 0.00079 16.3 -1.1 32 67-100 70-101 (117)
6 >1y6x_A Phosphoribosyl-ATP pyr 12.5 92 0.0027 13.0 1.3 58 54-111 9-70 (93)
7 >3gs9_A Protein GP18; NP_46580 12.4 57 0.0017 14.2 0.2 21 17-37 115-135 (198)
8 >1oi0_A AF2198, hypothetical p 12.0 53 0.0016 14.5 -0.1 13 17-29 68-80 (124)
9 >1yua_A Topoisomerase I; gene- 11.8 49 0.0015 14.7 -0.3 26 7-32 7-33 (70)
10 >1p9i_A Cortexillin I/GCN4 hyb 11.8 1E+02 0.003 12.7 3.1 26 69-94 1-26 (31)
No 1
>>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} (A:)
Probab=30.91 E-value=39 Score=15.26 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=39.8
Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876605766500036899999975889999875577888799999999999999998788
Q gi|254780122|r 25 DPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAK 84 (123)
Q Consensus 25 ~P~~~~E~~i~E~~~~L~~~i~~~~~~v~~~~Rs~~T~l~~~D~~~~~~~~I~L~~A~~k 84 (123)
+|+.--+|+ +...+|+++..-|..||-----.+..--+...+|+++++.|-|--+-++
T Consensus 44 ~P~VL~~mE--~~P~WL~Es~~~cQ~~vV~SL~~~~N~~~~~~L~~E~~~Ll~LY~~~~~ 101 (139)
T 2au5_A 44 SPIVLAEXE--KDPNWLEEAAGGXQGVIVQSLLEDENFSSVEQLKGELARLIRLYFALAK 101 (139)
T ss_dssp CHHHHHHHH--HCTTHHHHHHHHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999885--1830899998676778898775257857499999999999999999987
No 2
>>1ddz_A Carbonic anhydrase; alpha-beta-alpha; 2.20A {Porphyridium cruentum} (A:1-66,A:321-496)
Probab=21.94 E-value=57 Score=14.26 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 87557788879999999999999999878889999999975431388
Q gi|254780122|r 55 FKRSDSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGE 101 (123)
Q Consensus 55 ~~Rs~~T~l~~~D~~~~~~~~I~L~~A~~k~L~~~l~E~WE~~~D~E 101 (123)
-+|-.+-+.|..|.++.+-.|-+|-|-+.---.+.++|-|.+...-|
T Consensus 162 ~KRElS~ITDpkDsLdRLsqINvLqQl~nVas~~~~qdawdagqele 208 (242)
T 1ddz_A 162 NQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELE 208 (242)
T ss_dssp THHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTCCCE
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCE
T ss_conf 77653235887899999999999999999973977679987599518
No 3
>>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii str} (A:)
Probab=18.60 E-value=68 Score=13.82 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77888799999999999999998788899999
Q gi|254780122|r 59 DSTILDKLDAMDDLKTYISLLQATAKNLKSLL 90 (123)
Q Consensus 59 ~~T~l~~~D~~~~~~~~I~L~~A~~k~L~~~l 90 (123)
++..++..-.+|+++.+|.|+++....+.-.|
T Consensus 23 ~~prie~~G~lDEl~a~igl~~~~~~~~~~~L 54 (172)
T 1wvt_A 23 DSEIVKALGDLDELNSVLGVVSSLYPELSEVI 54 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88410131318999989999998535789999
No 4
>>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* (A:272-347)
Probab=14.71 E-value=66 Score=13.90 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999999758899998755778887999999999999
Q gi|254780122|r 39 RYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYI 76 (123)
Q Consensus 39 ~~L~~~i~~~~~~v~~~~Rs~~T~l~~~D~~~~~~~~I 76 (123)
..+|+++....++-.|.+-+.....+..+.++.++.+.
T Consensus 38 ~~~D~Ai~~~~~i~~FL~Q~~~e~~~~~~~~~~L~~i~ 75 (76)
T 2obl_A 38 PEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKVV 75 (76)
T ss_dssp HHHHHHHHTHHHHHHHHCCCTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999998259999982899989989999999999985
No 5
>>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} (A:)
Probab=14.16 E-value=27 Score=16.29 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999987888999999997543138
Q gi|254780122|r 67 DAMDDLKTYISLLQATAKNLKSLLKEYWEESLDG 100 (123)
Q Consensus 67 D~~~~~~~~I~L~~A~~k~L~~~l~E~WE~~~D~ 100 (123)
.+|.+.|-.+-.+|| |--+.+.+.+|..++||
T Consensus 70 gLmpdtkDV~~ILqa--RIyE~L~~dl~~d~ed~ 101 (117)
T 1s7z_A 70 GLXPDTKDVIRILQA--RIYEQLTIDLWEDAEDL 101 (117)
T ss_dssp GGSCCCSCHHHHHHH--HHHHHHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHH--HHHHHHHHHHHCCHHHH
T ss_conf 788881899999999--99999987510239999
No 6
>>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, metal, structural genomics, PSI; 1.25A {Mycobacterium tuberculosis} (A:)
Probab=12.51 E-value=92 Score=13.00 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCHHHHHHCCC
Q ss_conf 9875577888799999999999999998788899999----999754313887035673867
Q gi|254780122|r 54 VFKRSDSTILDKLDAMDDLKTYISLLQATAKNLKSLL----KEYWEESLDGEDDEEIYEHPD 111 (123)
Q Consensus 54 ~~~Rs~~T~l~~~D~~~~~~~~I~L~~A~~k~L~~~l----~E~WE~~~D~E~~E~~~EHPD 111 (123)
|..|-.+++.+..+...+--.--.|++.-.-+.--|+ -|+|.|..++..++-++|--|
T Consensus 9 ~L~~L~~~I~~R~~~~~e~SYT~~L~~~G~~~i~kKigEEa~E~i~A~~~~d~~~~~~E~AD 70 (93)
T 1y6x_A 9 TFEDLFAELGDRARTRPADSTTVAALDGGVHALGKKLLEEAGEVWLAAEHESNDALAEEISQ 70 (93)
T ss_dssp SHHHHHHHHHHHHHHCCTTCHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 59999999999863898773899998783789999998758999999980999999999999
No 7
>>3gs9_A Protein GP18; NP_465809.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e} (A:1-95,A:180-205,A:266-342)
Probab=12.45 E-value=57 Score=14.25 Aligned_cols=21 Identities=5% Similarity=0.059 Sum_probs=16.3
Q ss_pred HHHHCCCCCCCCEEEEEEECH
Q ss_conf 656379998766057665000
Q gi|254780122|r 17 YFHSHPNADPDISIEMQISEN 37 (123)
Q Consensus 17 ~F~S~~N~~P~~~~E~~i~E~ 37 (123)
+..++.|+.|++|+++...+.
T Consensus 115 ~a~~q~~D~P~~s~~V~~~~l 135 (198)
T 3gs9_A 115 FDIDTLSDYPATTGSVILXND 135 (198)
T ss_dssp EEEECTTCSCEEEEEECCC--
T ss_pred EEECCCCCCCCEEEEEEEECC
T ss_conf 997275428750699985012
No 8
>>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} (A:)
Probab=11.96 E-value=53 Score=14.45 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=8.7
Q ss_pred HHHHCCCCCCCCE
Q ss_conf 6563799987660
Q gi|254780122|r 17 YFHSHPNADPDIS 29 (123)
Q Consensus 17 ~F~S~~N~~P~~~ 29 (123)
.|||||+..|.-|
T Consensus 68 ~~HSHP~~~~~PS 80 (124)
T 1oi0_A 68 TVHSHPSPSCRPS 80 (124)
T ss_dssp EEEEESSSCCSCC
T ss_pred EEEECCCCCCCCC
T ss_conf 9985899989779
No 9
>>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} (A:53-122)
Probab=11.80 E-value=49 Score=14.66 Aligned_cols=26 Identities=27% Similarity=0.568 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHH-HCCCCCCCCEEEE
Q ss_conf 8999876213656-3799987660576
Q gi|254780122|r 7 HFHDEINENFYFH-SHPNADPDISIEM 32 (123)
Q Consensus 7 ~~~~EI~~N~~F~-S~~N~~P~~~~E~ 32 (123)
-|-|+|.+.|.|+ +||-.|||-|--+
T Consensus 7 ~~~d~l~~K~~yL~~AP~~Dp~Gn~ti 33 (70)
T 1yua_A 7 RFRDRLPEKLRYLADAPQQDPEGNKTM 33 (70)
T ss_dssp HTTTTCCSTTHHHHHSCSSCTTCCCEE
T ss_pred HHHHHCCHHHHHHHCCCCCCCCCCEEE
T ss_conf 999864398898844986698899248
No 10
>>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} (A:)
Probab=11.80 E-value=1e+02 Score=12.71 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987888999999997
Q gi|254780122|r 69 MDDLKTYISLLQATAKNLKSLLKEYW 94 (123)
Q Consensus 69 ~~~~~~~I~L~~A~~k~L~~~l~E~W 94 (123)
||.+|....-+.|..|.|+.+..|..
T Consensus 1 mdqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 92789999988988789999999999
Done!