Query gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 2 out of 4
Neff 1.5
Searched_HMMs 23785
Date Wed May 18 18:28:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780122.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mfn_A Uncharacterized protein 22.9 11 0.00048 17.6 -0.5 44 1-44 1-45 (157)
2 2au5_A Conserved domain protei 22.8 39 0.0016 14.4 4.1 58 25-84 44-101 (139)
3 1joc_A EEA1, early endosomal a 19.1 46 0.002 13.9 7.4 71 36-106 5-75 (125)
4 1s7z_A Gene 0.3 protein; all h 14.4 18 0.00077 16.3 -1.1 32 67-100 70-101 (117)
5 1oi0_A AF2198, hypothetical pr 12.3 36 0.0015 14.6 -0.1 11 17-27 68-78 (124)
6 1p9i_A Cortexillin I/GCN4 hybr 11.8 72 0.003 12.7 3.1 26 69-94 1-26 (31)
7 1u83_A Phosphosulfolactate syn 10.0 35 0.0015 14.6 -0.7 78 1-82 1-92 (276)
8 1wvt_A Hypothetical protein ST 9.7 86 0.0036 12.3 4.1 32 59-90 23-54 (172)
9 2kks_A Uncharacterized protein 8.2 64 0.0027 13.1 -0.0 12 18-29 80-91 (146)
10 1j7q_A CAVP, calcium vector pr 7.8 1E+02 0.0043 11.8 1.6 32 43-74 11-42 (86)
No 1
>3mfn_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 2.02A {Dyadobacter fermentans}
Probab=22.95 E-value=11 Score=17.60 Aligned_cols=44 Identities=32% Similarity=0.597 Sum_probs=34.1
Q ss_pred CCHHHH-HHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 932788-89998762136563799987660576650003689999
Q gi|254780122|r 1 MGALKN-HFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEE 44 (123)
Q Consensus 1 MG~LK~-~~~~EI~~N~~F~S~~N~~P~~~~E~~i~E~~~~L~~~ 44 (123)
||.-.. |-|..-.+|.||..|.-...+.|-.-.|+|-.|||+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~EArryLdnA 45 (157)
T 3mfn_A 1 MGSSHHHHHHSSGRENLYFQGHMIKKQELSAQEAVIEAKRYLNNA 45 (157)
T ss_dssp ------------------------------CCTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 987543333456642102200146576503889999999999889
No 2
>2au5_A Conserved domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Enterococcus faecalis V583} SCOP: a.244.1.1
Probab=22.83 E-value=39 Score=14.37 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876605766500036899999975889999875577888799999999999999998788
Q gi|254780122|r 25 DPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAK 84 (123)
Q Consensus 25 ~P~~~~E~~i~E~~~~L~~~i~~~~~~v~~~~Rs~~T~l~~~D~~~~~~~~I~L~~A~~k 84 (123)
+|+.--+|+ +...+|+++..-|..||-----.+..--+...+|+++++.|-|--|-++
T Consensus 44 ~P~VL~~ME--~~P~WL~Es~~~~Q~~iV~SL~~~~N~~~~~~L~~E~~~Li~LY~~~~~ 101 (139)
T 2au5_A 44 SPIVLAEME--KDPNWLEEAAGGMQGVIVQSLLEDENFSSVEQLKGELARLIRLYFALAK 101 (139)
T ss_dssp CHHHHHHHH--HCTTHHHHHHHHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999885--1830899998676778898775257857499999999999999999987
No 3
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=19.06 E-value=46 Score=13.88 Aligned_cols=71 Identities=8% Similarity=0.021 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 00368999999758899998755778887999999999999999987888999999997543138870356
Q gi|254780122|r 36 ENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEI 106 (123)
Q Consensus 36 E~~~~L~~~i~~~~~~v~~~~Rs~~T~l~~~D~~~~~~~~I~L~~A~~k~L~~~l~E~WE~~~D~E~~E~~ 106 (123)
|.+..||+.+++-..+-....+.....-.+.+....+...-...+.-...........|..-.+...|-.|
T Consensus 5 E~r~~ler~~~~e~e~e~l~~~~~~l~~~l~~~~~~~~~~~~~~~~lq~~~~~~~~~~W~~d~~~~~C~~C 75 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMAC 75 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCGGGCCBCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998499999999999999998888999999999987877653412256848998768707575
No 4
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1
Probab=14.36 E-value=18 Score=16.34 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999987888999999997543138
Q gi|254780122|r 67 DAMDDLKTYISLLQATAKNLKSLLKEYWEESLDG 100 (123)
Q Consensus 67 D~~~~~~~~I~L~~A~~k~L~~~l~E~WE~~~D~ 100 (123)
.+|.+.|-.+-.+|| |--+-+.+.+|+.++||
T Consensus 70 GLmpdtkDV~~ILqa--RIyE~L~~dl~~d~ed~ 101 (117)
T 1s7z_A 70 GLMPDTKDVIRILQA--RIYEQLTIDLWEDAEDL 101 (117)
T ss_dssp GGSCCCSCHHHHHHH--HHHHHHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHH--HHHHHHHHHHHCCHHHH
T ss_conf 788881899999999--99999987510239999
No 5
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=12.33 E-value=36 Score=14.57 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=6.4
Q ss_pred HHHHCCCCCCC
Q ss_conf 65637999876
Q gi|254780122|r 17 YFHSHPNADPD 27 (123)
Q Consensus 17 ~F~S~~N~~P~ 27 (123)
-|||||+..|.
T Consensus 68 i~HSHP~~~a~ 78 (124)
T 1oi0_A 68 TVHSHPSPSCR 78 (124)
T ss_dssp EEEEESSSCCS
T ss_pred EEEECCCCCCC
T ss_conf 99838999898
No 6
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=11.80 E-value=72 Score=12.71 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987888999999997
Q gi|254780122|r 69 MDDLKTYISLLQATAKNLKSLLKEYW 94 (123)
Q Consensus 69 ~~~~~~~I~L~~A~~k~L~~~l~E~W 94 (123)
||.+|....-+.|..|.|+.+..|..
T Consensus 1 mdqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 92789999988988789999999999
No 7
>1u83_A Phosphosulfolactate synthase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, lyase; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=10.02 E-value=35 Score=14.61 Aligned_cols=78 Identities=28% Similarity=0.425 Sum_probs=51.1
Q ss_pred CCHHHH-HHHHHHHHHHHHHHCCCC----------CCCCEEEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 932788-899987621365637999----------8766057665000---36899999975889999875577888799
Q gi|254780122|r 1 MGALKN-HFHDEINENFYFHSHPNA----------DPDISIEMQISEN---QRYLDEEISQCNAVVDVFKRSDSTILDKL 66 (123)
Q Consensus 1 MG~LK~-~~~~EI~~N~~F~S~~N~----------~P~~~~E~~i~E~---~~~L~~~i~~~~~~v~~~~Rs~~T~l~~~ 66 (123)
||.-.. |-|..-.+|.||..|.|. -|-.+=--.|+.+ -++++.-|.++-..||+.|=+--|.+ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~R~~KPR~~GlT~V~DkGl~l~~leD~Le~~g~yID~vKfg~GTs~-l- 78 (276)
T 1u83_A 1 MGSSHHHHHHSSGRENLYFQGHMNDFSLELPVRTNKPRETGQSILIDNGYPLQFFKDAIAGASDYIDFVKFGWGTSL-L- 78 (276)
T ss_dssp ------------------------CCCCCCCCCCCSSCSSSCEEEEESSCCHHHHHHHHHHHGGGCCEEEECTTGGG-G-
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCEEC-C-
T ss_conf 98654443345664212231011236778999999985468368942999989999999974545258885485331-2-
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999987
Q gi|254780122|r 67 DAMDDLKTYISLLQAT 82 (123)
Q Consensus 67 D~~~~~~~~I~L~~A~ 82 (123)
+.+|+..|.|++.+
T Consensus 79 --~~~L~eKI~l~~~~ 92 (276)
T 1u83_A 79 --TKDLEEKISTLKEH 92 (276)
T ss_dssp --CTTHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHC
T ss_conf --68999999999986
No 8
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii str}
Probab=9.65 E-value=86 Score=12.25 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77888799999999999999998788899999
Q gi|254780122|r 59 DSTILDKLDAMDDLKTYISLLQATAKNLKSLL 90 (123)
Q Consensus 59 ~~T~l~~~D~~~~~~~~I~L~~A~~k~L~~~l 90 (123)
++..+...-.+|+++..|.++++....++..+
T Consensus 23 ~~~rie~~G~lDELns~iGla~~~~~~~~~~L 54 (172)
T 1wvt_A 23 DSEIVKALGDLDELNSVLGVVSSLYPELSEVI 54 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98400020208999999999998668999999
No 9
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51}
Probab=8.17 E-value=64 Score=13.05 Aligned_cols=12 Identities=50% Similarity=0.778 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCE
Q ss_conf 563799987660
Q gi|254780122|r 18 FHSHPNADPDIS 29 (123)
Q Consensus 18 F~S~~N~~P~~~ 29 (123)
|||||+..|.-|
T Consensus 80 ~HSHP~~~a~PS 91 (146)
T 2kks_A 80 FHSHPATPARPS 91 (146)
T ss_dssp EEEESSSCSSCC
T ss_pred EECCCCCCCCCC
T ss_conf 957999999999
No 10
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=7.81 E-value=1e+02 Score=11.78 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997588999987557788879999999999
Q gi|254780122|r 43 EEISQCNAVVDVFKRSDSTILDKLDAMDDLKT 74 (123)
Q Consensus 43 ~~i~~~~~~v~~~~Rs~~T~l~~~D~~~~~~~ 74 (123)
++-..|-++.|.|+|....|-..-|.||-+..
T Consensus 11 eekdecmkifdifdrnaeniapvsdtmdmltk 42 (86)
T 1j7q_A 11 EEKDECMKIFDIFDRNAENIAPVSDTMDMLTK 42 (86)
T ss_dssp THHHHHHHHHHHHSTTTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 25778999999970352115771028999999
Done!